264 311 42 18 chr5 0 167 -203085365 + CT-rich Low_complexity Low_complexity 2 172 0 562 234 223 16 chr5 506 690 -203084842 - MER58A DNA MER1_type -2 222 1 26 30 0 0 chr5 1852 1885 -203083647 + AT_rich Low_complexity Low_complexity 1 33 0 556 233 58 28 chr5 2334 2574 -203082958 + L1M4 LINE L1 2958 3215 -2931 22 0 0 0 chr5 2720 2742 -203082790 + AT_rich Low_complexity Low_complexity 1 22 0 1602 163 12 4 chr5 2747 3004 -203082528 - AluJb SINE Alu -36 276 18 1506 120 48 0 chr5 3023 3273 -203082259 - AluSg SINE Alu -18 292 31 8725 48 1 7 chr5 3413 4507 -203081025 - L1P LINE L1 -1638 4508 3422 210 213 62 0 chr5 4793 4873 -203080659 + (TA)n Simple_repeat Simple_repeat 1 85 0 299 262 0 65 chr5 5141 5248 -203080284 + MIR SINE MIR 163 262 0 431 195 142 12 chr5 5420 5589 -203079943 - LTR54B LTR ERV1 0 498 308 646 189 49 0 chr5 5735 5857 -203079675 + MER41A LTR ERV1 426 553 -1 308 283 170 39 chr5 5859 6142 -203079390 + L2 LINE L2 2921 3240 -73 23 68 0 0 chr5 6955 6999 -203078533 + AT_rich Low_complexity Low_complexity 1 44 0 183 42 0 0 chr5 7669 7693 -203077839 + (T)n Simple_repeat Simple_repeat 1 24 0 2514 57 7 0 chr5 8144 8441 -203077091 + AluY SINE Alu 3 301 -10 1928 120 31 7 chr5 10114 10405 -203075127 + AluSx SINE Alu 1 298 -14 2364 91 0 7 chr5 10407 10704 -203074828 + AluSg SINE Alu 1 295 -15 2343 91 0 3 chr5 11588 11895 -203073637 - AluSx SINE Alu -6 306 1 1006 96 58 13 chr5 12189 12345 -203073187 - MER30 DNA MER1_type 0 230 68 1315 184 109 0 chr5 12734 13027 -203072505 + Charlie1 DNA MER1_type 2437 2761 0 435 193 167 0 chr5 13191 13305 -203072227 - L1MB5 LINE L1 -1 6173 6041 7263 110 11 17 chr5 13650 14859 -203070673 - L1P LINE L1 -3710 2436 1236 197 215 0 25 chr5 15218 15297 -203070235 + (CATA)n Simple_repeat Simple_repeat 4 80 0 338 0 0 23 chr5 15406 15449 -203070083 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 2435 75 13 0 chr5 15452 15758 -203069774 - AluY SINE Alu -1 310 1 595 126 0 0 chr5 16189 16276 -203069256 + AluSg/x SINE Alu 198 284 -28 195 69 0 0 chr5 16276 16305 -203069227 + (TA)n Simple_repeat Simple_repeat 2 30 0 239 261 78 17 chr5 16338 16453 -203069079 - L1ME4a LINE L1 -49 6072 5951 2194 105 0 29 chr5 16473 16786 -203068746 - AluSx SINE Alu -8 304 1 1576 74 35 30 chr5 16829 17007 -203068525 + L1MA1 LINE L1 6068 6249 -53 2443 88 3 0 chr5 17007 17314 -203068218 + AluY SINE Alu 1 308 -3 1576 74 35 30 chr5 17314 17365 -203068167 + L1MA1 LINE L1 6249 6298 -4 2137 108 20 7 chr5 17434 17740 -203067792 - AluSg SINE Alu 0 310 1 420 350 37 28 chr5 18619 18836 -203066696 + MIR SINE MIR 26 244 -18 1709 126 0 8 chr5 19192 19439 -203066093 - AluSp SINE Alu -68 245 1 935 167 29 23 chr5 19439 19613 -203065919 - FRAM SINE Alu -1 175 1 601 222 61 11 chr5 20299 20479 -203065053 - AluSg1 SINE Alu -120 189 1 647 179 32 32 chr5 20483 20639 -203064893 - L1MC5 LINE L1 -35 7926 7771 1454 162 85 22 chr5 20651 20923 -203064609 - AluJo SINE Alu -23 289 1 314 93 23 0 chr5 20923 20966 -203064566 - Alu SINE Alu -257 44 1 405 256 109 0 chr5 21040 21196 -203064336 - L1MC5 LINE L1 -428 7533 7361 516 275 34 22 chr5 21499 21677 -203063855 + MIR SINE MIR 34 213 -49 384 324 49 0 chr5 21980 22122 -203063410 - MIR3 SINE MIR -17 191 43 5632 151 32 23 chr5 22578 24144 -203061388 - L1M2 LINE L1 -512 5788 4211 1977 110 23 3 chr5 24304 24605 -203060927 + AluSc SINE Alu 1 307 -2 1031 65 87 0 chr5 24605 24743 -203060789 + AluSp SINE Alu 134 283 -30 42 20 0 0 chr5 25640 25689 -203059843 + GC_rich Low_complexity Low_complexity 1 49 0 2051 122 0 16 chr5 26677 26980 -203058552 + AluSx SINE Alu 3 300 -12 22 0 0 0 chr5 27264 27286 -203058246 + AT_rich Low_complexity Low_complexity 1 22 0 1103 80 7 0 chr5 27472 27610 -203057922 + AluSq/x SINE Alu 1 139 -173 367 286 25 8 chr5 27871 27990 -203057542 - MIR SINE MIR -50 212 92 369 309 79 0 chr5 28521 28660 -203056872 + MER91A DNA MER1_type 13 162 -34 2236 4 96 0 chr5 29712 29963 -203055569 - AluYa5 SINE Alu -11 300 26 337 323 186 4 chr5 30877 31140 -203054392 + L1ME LINE L1 5512 5822 -299 2493 74 0 0 chr5 31159 31456 -203054076 + AluSx SINE Alu 7 303 -9 7436 108 45 25 chr5 32104 32502 -203053030 + HSMAR2 DNA Mariner 135 524 -778 2021 121 24 3 chr5 32502 32791 -203052741 + AluSx SINE Alu 2 296 -16 7436 108 45 25 chr5 32791 33121 -203052411 + HSMAR2 DNA Mariner 524 846 -456 2217 129 0 0 chr5 33121 33416 -203052116 - AluSx SINE Alu -17 295 1 7436 108 45 25 chr5 33416 33625 -203051907 + HSMAR2 DNA Mariner 846 1049 -253 2137 115 3 23 chr5 33625 33930 -203051602 + AluSq SINE Alu 1 299 -14 7436 108 45 25 chr5 33930 34135 -203051397 + HSMAR2 DNA Mariner 1049 1302 0 996 136 13 0 chr5 34436 34591 -203050941 + FRAM SINE Alu 8 164 -12 2614 40 0 0 chr5 34593 34889 -203050643 + AluY SINE Alu 1 296 -15 810 221 55 3 chr5 35004 35197 -203050335 + MLT1F1 LTR MaLR 7 251 -298 1230 85 7 0 chr5 35371 35547 -203049985 - AluSg/x SINE Alu 0 307 131 2551 68 3 0 chr5 35548 35856 -203049676 - AluSx SINE Alu -3 309 1 410 119 13 0 chr5 35968 36044 -203049488 - L1P5 LINE L1 -703 5451 5375 265 234 0 16 chr5 36039 36103 -203049429 + L1ME4a LINE L1 5598 5660 -461 * 369 0 0 0 chr5 36103 36144 -203049388 + (CA)n Simple_repeat Simple_repeat 2 42 0 301 269 83 0 chr5 36259 36367 -203049165 + L1ME4a LINE L1 6003 6119 -2 554 203 0 70 chr5 36510 36638 -203048894 + L1MC4a LINE L1 6699 6817 -991 189 0 0 0 chr5 36663 36684 -203048848 + (GGA)n Simple_repeat Simple_repeat 3 23 0 25 0 0 0 chr5 37595 37620 -203047912 + AT_rich Low_complexity Low_complexity 1 25 0 2589 40 10 0 chr5 37844 38148 -203047384 - AluY SINE Alu -4 307 1 517 277 117 0 chr5 38609 38746 -203046786 - L1MC/D LINE L1 -2177 5631 5479 2273 120 0 0 chr5 38796 39105 -203046427 + AluSx SINE Alu 1 309 -3 860 249 175 25 chr5 39328 39722 -203045810 + MLT1H LTR MaLR 91 543 -6 2207 107 7 0 chr5 39779 40070 -203045462 + AluSx SINE Alu 1 293 -19 1569 264 114 20 chr5 40166 40659 -203044873 + MLT1E LTR MaLR 3 541 -52 2394 79 0 3 chr5 40781 41086 -203044446 - AluY SINE Alu -1 310 7 2235 97 0 4 chr5 41253 41568 -203043964 + AluSx SINE Alu 5 318 0 618 84 21 42 chr5 41759 41854 -203043678 + MSTB1 LTR MaLR 340 432 0 1619 217 72 0 chr5 41873 42260 -203043272 + MLT1E1 LTR MaLR 225 639 -15 380 220 110 0 chr5 42260 42378 -203043154 + L1M4 LINE L1 2258 2388 -3758 2428 86 7 0 chr5 42397 42701 -203042831 - AluY SINE Alu -5 306 1 1459 180 11 123 chr5 42702 42961 -203042571 + L1M4 LINE L1 4837 5123 -1023 2150 147 0 3 chr5 42961 43274 -203042258 - AluSx SINE Alu 0 312 1 1459 180 11 123 chr5 43274 43364 -203042168 + L1M4 LINE L1 5123 5221 -925 2306 105 0 0 chr5 43364 43659 -203041873 + AluSg1 SINE Alu 1 295 -14 1459 180 11 123 chr5 43659 43683 -203041849 + L1M4 LINE L1 5221 5151 -995 2227 126 3 0 chr5 43683 43992 -203041540 + AluSx SINE Alu 1 310 -2 1459 180 11 123 chr5 43992 44089 -203041443 + L1M4 LINE L1 5150 5256 -890 2350 130 15 44 chr5 44089 44289 -203041243 + MSTB LTR MaLR 1 184 -242 2977 9 0 0 chr5 44289 44604 -203040928 + AluYb8 SINE Alu 1 315 -3 2350 130 15 44 chr5 44604 44811 -203040721 + MSTB LTR MaLR 184 396 -30 989 185 0 25 chr5 44812 45012 -203040520 - AluJb SINE Alu -2 310 116 743 168 0 0 chr5 45083 45196 -203040336 + FLAM_C SINE Alu 21 133 -10 1764 148 17 27 chr5 45361 45658 -203039874 + AluJb SINE Alu 5 298 -14 234 0 0 0 chr5 46058 46084 -203039448 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2046 132 3 3 chr5 46096 46385 -203039147 + AluSq SINE Alu 1 289 -24 21 0 0 0 chr5 46385 46406 -203039126 + AT_rich Low_complexity Low_complexity 1 21 0 765 142 42 0 chr5 46409 46529 -203039003 - FLAM_A SINE Alu -8 125 1 2011 111 0 62 chr5 46547 46872 -203038660 - MER1B DNA MER1_type 0 339 35 409 362 97 13 chr5 47109 47246 -203038286 + L2 LINE L2 1991 2115 -1199 2310 95 3 10 chr5 47246 47552 -203037980 - AluSp SINE Alu -9 304 1 409 362 97 13 chr5 47552 48093 -203037439 + L2 LINE L2 2115 2726 -588 2958 76 39 7 chr5 48404 48836 -203036696 + L1PA8 LINE L1 5697 6142 -30 2215 103 10 3 chr5 49055 49365 -203036167 - AluSx SINE Alu 0 312 1 2374 91 0 7 chr5 49648 49955 -203035577 + AluSx SINE Alu 1 305 -7 1869 150 0 11 chr5 50030 50316 -203035216 + AluJb SINE Alu 1 283 -29 226 0 0 0 chr5 50316 50341 -203035191 + (CAAA)n Simple_repeat Simple_repeat 2 128 0 288 255 104 32 chr5 50384 50557 -203034975 + L1PB4 LINE L1 5638 5828 -477 294 202 0 0 chr5 50558 50619 -203034913 + L1PB4 LINE L1 6094 6154 -2 * 355 235 20 0 chr5 50611 50709 -203034823 + L1MC4a LINE L1 5812 5911 -1897 2385 108 3 0 chr5 50882 51188 -203034344 - AluSx SINE Alu -5 307 1 1306 52 0 0 chr5 51584 51739 -203033793 - AluY SINE Alu 0 311 157 2899 234 57 18 chr5 51843 52614 -203032918 - MER54A LTR ERVL -98 803 3 2072 97 11 4 chr5 53144 53440 -203032092 + AluSx SINE Alu 15 312 0 1804 153 7 17 chr5 53536 53830 -203031702 - AluSq SINE Alu -22 291 1 1025 240 16 29 chr5 54062 54100 -203031432 - MIR SINE MIR -21 241 204 1466 139 0 5 chr5 54100 54309 -203031223 - AluJb SINE Alu -18 294 87 1025 240 16 29 chr5 54309 54512 -203031020 - MIR SINE MIR -58 204 3 1351 158 132 19 chr5 54592 54857 -203030675 - AluJb SINE Alu -5 297 3 1135 240 117 36 chr5 55172 55690 -203029842 - MLT1F1 LTR MaLR 0 567 4 2693 82 26 87 chr5 55736 56501 -203029031 + SVA Other Other 396 868 -520 821 82 13 63 chr5 56994 57153 -203028379 - AluY SINE Alu -156 155 5 443 271 129 19 chr5 57158 57313 -203028219 - MLT1E LTR MaLR -452 141 13 301 194 49 13 chr5 57524 57627 -203027905 + MIR SINE MIR 15 158 -104 1422 103 42 0 chr5 57629 57843 -203027689 - MSTC LTR MaLR -205 223 1 345 135 0 0 chr5 57991 58043 -203027489 + L1MD2 LINE L1 5541 5592 -650 3102 186 57 28 chr5 58109 58199 -203027333 + L1MD2 LINE L1 5596 5682 -677 2177 119 3 0 chr5 58199 58513 -203027019 + AluSx SINE Alu 1 312 0 3102 186 57 28 chr5 58513 58898 -203026634 + L1MD2 LINE L1 5682 6102 -257 1906 154 13 19 chr5 58898 59210 -203026322 - AluJo SINE Alu -2 310 1 3102 186 57 28 chr5 59210 59453 -203026079 + L1MD2 LINE L1 6102 6336 -23 2368 92 0 19 chr5 59597 59912 -203025620 + AluSc SINE Alu 1 309 0 487 296 111 74 chr5 59921 60412 -203025120 + L2 LINE L2 2275 2746 -567 1120 113 50 134 chr5 60412 60732 -203024800 + AluJb SINE Alu 1 293 -9 487 296 111 74 chr5 60732 61237 -203024295 + L2 LINE L2 2746 3313 0 368 234 43 0 chr5 61243 61337 -203024195 + MIR SINE MIR 47 144 -118 258 136 106 15 chr5 61339 61405 -203024127 - LTR16A1 LTR ERVL -2 455 384 1251 83 21 47 chr5 61736 61928 -203023604 + AluSx SINE Alu 1 187 -125 196 194 0 0 chr5 64164 64200 -203021332 - L2 LINE L2 -17 3255 3220 2041 151 0 0 chr5 64567 64859 -203020673 + AluSx SINE Alu 1 292 -20 2523 71 0 0 chr5 65052 65349 -203020183 - AluSg SINE Alu -13 297 1 691 145 8 0 chr5 66882 66999 -203018533 - MER46A DNA MER2_type -1 235 118 410 143 312 0 chr5 67004 67081 -203018451 + AluJ/FLAM SINE Alu 2 102 -210 300 269 39 0 chr5 67287 67365 -203018167 + L2 LINE L2 3191 3271 -1 2085 118 35 0 chr5 68131 68419 -203017113 + AluSq SINE Alu 1 298 -15 2414 108 0 0 chr5 68760 69067 -203016465 - AluSq SINE Alu -6 307 1 1826 141 27 37 chr5 69264 69561 -203015971 + AluJo SINE Alu 1 294 -18 883 119 13 50 chr5 70430 70589 -203014943 + FRAM SINE Alu 1 40 0 1874 134 10 38 chr5 70589 70881 -203014651 + AluJb SINE Alu 4 287 -25 530 271 177 0 chr5 71190 71393 -203014139 + MIR SINE MIR 3 241 -21 1839 126 61 24 chr5 71822 72115 -203013417 - AluSq SINE Alu -9 304 1 613 22 0 82 chr5 74577 74712 -203010820 + (TA)n Simple_repeat Simple_repeat 2 125 0 2045 135 0 0 chr5 74933 75221 -203010311 + AluJb SINE Alu 1 288 -24 246 251 97 101 chr5 76265 76415 -203009117 - L2 LINE L2 -1 3312 3163 2992 126 37 0 chr5 76415 76876 -203008656 + L1PA16 LINE L1 5686 6163 -3 246 251 97 101 chr5 76876 76889 -203008643 - L2 LINE L2 -150 3163 3151 2109 98 7 7 chr5 76889 77174 -203008358 + AluSx SINE Alu 12 296 -16 246 251 97 101 chr5 77174 77216 -203008316 - L2 LINE L2 -162 3151 3107 2049 82 48 4 chr5 77998 78291 -203007241 + AluY SINE Alu 1 305 0 300 118 71 35 chr5 78819 78989 -203006543 + (CA)n Simple_repeat Simple_repeat 1 176 0 380 121 80 12 chr5 79071 79491 -203006041 + (CA)n Simple_repeat Simple_repeat 1 448 0 342 119 66 37 chr5 80031 80275 -203005257 + (CA)n Simple_repeat Simple_repeat 1 251 0 2501 212 60 6 chr5 81203 81825 -203003707 + LTR34 LTR ERV1 1 655 -44 2090 118 0 4 chr5 81830 82110 -203003422 + AluSx SINE Alu 1 279 -33 270 237 22 0 chr5 82885 83024 -203002508 + G-rich Low_complexity Low_complexity 4 145 0 410 261 6 0 chr5 83043 83219 -203002313 + G-rich Low_complexity Low_complexity 3 179 0 374 250 0 0 chr5 83222 83338 -203002194 + (CTGGGG)n Simple_repeat Simple_repeat 3 118 0 11052 126 9 21 chr5 84653 86449 -202999083 - L1P LINE L1 -4360 1786 11 353 189 19 39 chr5 88363 88579 -202996953 + (CACCAT)n Simple_repeat Simple_repeat 1 211 0 420 220 11 40 chr5 88605 88782 -202996750 + (CACCAT)n Simple_repeat Simple_repeat 6 177 0 2127 120 0 3 chr5 91267 91567 -202993965 - AluSg SINE Alu -11 299 1 930 291 79 34 chr5 91821 92288 -202993244 + L1ME1 LINE L1 5670 6157 -9 306 261 71 82 chr5 92293 92477 -202993055 + HAL1 LINE L1 1549 1730 -777 2253 97 3 7 chr5 92486 92785 -202992747 + AluSx SINE Alu 1 298 -14 508 298 143 24 chr5 93016 93435 -202992097 + HAL1 LINE L1 2039 2507 0 338 272 52 87 chr5 93711 93998 -202991534 + MLT1J LTR MaLR 225 501 -10 322 256 43 38 chr5 94562 94857 -202990675 + MLT1D LTR MaLR 89 389 -78 231 211 26 53 chr5 96536 96650 -202988882 + (CA)n Simple_repeat Simple_repeat 2 112 0 268 108 20 138 chr5 96763 96958 -202988574 + (CACAG)n Simple_repeat Simple_repeat 1 172 0 262 155 5 102 chr5 96909 97096 -202988436 + (CACG)n Simple_repeat Simple_repeat 3 171 0 * 201 222 0 81 chr5 97127 97312 -202988220 + (CA)n Simple_repeat Simple_repeat 1 170 0 1084 57 0 0 chr5 100051 100174 -202985358 + AluY SINE Alu 1 123 -188 1154 158 0 0 chr5 100342 100513 -202985019 + AluJb SINE Alu 135 305 -7 751 253 50 56 chr5 102579 102899 -202982633 - MLT2C1 LTR ERVL -65 332 15 233 222 0 0 chr5 103212 103257 -202982275 + MIR SINE MIR 112 156 -106 2502 194 16 8 chr5 104426 104925 -202980607 + L1MC1 LINE L1 5430 5932 -401 1366 186 37 93 chr5 104916 105466 -202980066 + L1M3 LINE L1 5065 5582 -601 * 2012 61 0 0 chr5 105566 105830 -202979702 + L1HS LINE L1 5892 6155 0 207 69 0 0 chr5 105830 105859 -202979673 + (A)n Simple_repeat Simple_repeat 1 29 0 2272 123 7 0 chr5 105960 106262 -202979270 + AluSx SINE Alu 1 304 -8 580 279 47 12 chr5 107021 107193 -202978339 - MER45A DNA AcHobo 0 178 1 354 138 55 9 chr5 107477 107586 -202977946 + CT-rich Low_complexity Low_complexity 4 117 0 27 0 0 0 chr5 107592 107619 -202977913 + AT_rich Low_complexity Low_complexity 1 27 0 1062 292 77 47 chr5 110776 111876 -202973656 - L1ME LINE L1 -486 5684 4549 1163 233 60 6 chr5 112333 112650 -202972882 + MLT1A1 LTR MaLR 20 353 -12 1709 248 128 4 chr5 113668 114184 -202971348 - MER82 DNA MER2_type -1 652 73 502 226 10 36 chr5 114488 114938 -202970594 + (CA)n Simple_repeat Simple_repeat 1 438 0 263 194 39 0 chr5 114965 115068 -202970464 + (CA)n Simple_repeat Simple_repeat 1 107 0 408 147 16 79 chr5 115150 115340 -202970192 + (CA)n Simple_repeat Simple_repeat 2 179 0 888 266 18 39 chr5 116885 117216 -202968316 - MER33 DNA MER1_type 0 324 1 252 293 0 0 chr5 117241 117316 -202968216 + MER58A DNA MER1_type 36 110 -114 4925 200 58 24 chr5 118434 118702 -202966830 - Tigger3b DNA MER2_type -1816 1212 955 2436 83 0 3 chr5 118702 119002 -202966530 + AluY SINE Alu 1 299 -12 4925 200 58 24 chr5 119002 119902 -202965630 - Tigger3b DNA MER2_type -2073 955 4 646 228 53 0 chr5 120427 120598 -202964934 + MER5A DNA MER1_type 5 184 -5 21 36 0 0 chr5 121098 121126 -202964406 + AT_rich Low_complexity Low_complexity 1 28 0 386 304 89 5 chr5 121230 121363 -202964169 + Charlie5 DNA MER1_type 2391 2550 -74 1911 161 0 32 chr5 121363 121679 -202963853 - AluJb SINE Alu -2 310 5 386 304 89 5 chr5 121679 121759 -202963773 + Charlie5 DNA MER1_type 2550 2622 -2 226 340 19 19 chr5 122182 122288 -202963244 - L3b LINE CR1 -228 1355 1250 2478 21 0 0 chr5 122354 122680 -202962852 - L1HS LINE L1 -2832 3314 2989 * 17028 16 0 0 chr5 122677 125512 -202960020 + L1HS LINE L1 3321 6155 0 24 0 0 0 chr5 125512 125536 -202959996 + AT_rich Low_complexity Low_complexity 1 24 0 532 161 0 0 chr5 125643 125724 -202959808 + AluS SINE Alu 2 82 -231 1296 202 87 39 chr5 126996 127170 -202958362 - MLT1B LTR MaLR -16 374 210 2154 107 0 20 chr5 127170 127468 -202958064 - AluSg SINE Alu -18 292 1 1296 202 87 39 chr5 127468 127649 -202957883 - MLT1B LTR MaLR -180 210 2 2298 116 7 0 chr5 128091 128393 -202957139 + AluSx SINE Alu 1 304 -8 399 290 53 24 chr5 129438 129645 -202955887 - MLT1H LTR MaLR -4 545 333 362 272 28 15 chr5 129702 129861 -202955671 - MLT1H LTR MaLR -381 168 21 336 211 279 42 chr5 131557 131747 -202953785 - MLT1E1 LTR MaLR 0 654 420 487 254 101 21 chr5 131807 131996 -202953536 - MLT1E1 LTR MaLR -383 271 68 4027 197 11 5 chr5 133125 133933 -202951599 + L1MB3 LINE L1 5368 6180 -3 205 195 0 0 chr5 134265 134306 -202951226 + A-rich Low_complexity Low_complexity 1 41 0 2586 186 10 46 chr5 134507 134594 -202950938 + L1MA8 LINE L1 5260 5349 -942 2873 16 0 0 chr5 134594 134900 -202950632 + AluYb8 SINE Alu 3 308 -10 2586 186 10 46 chr5 134900 135399 -202950133 + L1MA8 LINE L1 5349 5825 -466 1419 245 90 25 chr5 135430 135495 -202950037 + L1MA9 LINE L1 5768 5827 -485 2204 118 0 13 chr5 135495 135801 -202949731 + AluSq SINE Alu 1 302 -11 1419 245 90 25 chr5 135801 136248 -202949284 + L1MA9 LINE L1 5827 6312 0 32 75 0 0 chr5 136256 136323 -202949209 + AT_rich Low_complexity Low_complexity 1 67 0 540 318 37 16 chr5 136736 136981 -202948551 + MLT1A1 LTR MaLR 116 365 0 575 261 73 9 chr5 136987 137205 -202948327 - MLT1E1 LTR MaLR -5 649 418 354 283 51 8 chr5 137262 137424 -202948108 - MLT1E3 LTR MaLR -382 272 95 591 267 80 13 chr5 139646 140088 -202945444 + L1ME2 LINE L1 5043 5517 -645 1052 249 22 11 chr5 140092 140369 -202945163 - L1MA6 LINE L1 -36 6264 5985 438 321 26 19 chr5 140383 140621 -202944911 + L1ME2 LINE L1 5536 5780 -384 605 266 30 94 chr5 140744 141116 -202944416 + L1ME2 LINE L1 5804 6151 -13 21 0 0 0 chr5 141286 141307 -202944225 + AT_rich Low_complexity Low_complexity 1 21 0 457 174 43 0 chr5 141400 141492 -202944040 + MER85 DNA T2_type 32 127 -12 24 32 0 0 chr5 143678 143709 -202941823 + AT_rich Low_complexity Low_complexity 1 31 0 1985 100 14 60 chr5 146374 146559 -202938973 - THE1C LTR MaLR -40 335 172 2419 94 3 0 chr5 146559 146866 -202938666 + AluSg1 SINE Alu 1 308 -1 1985 100 14 60 chr5 146866 147031 -202938501 - THE1C LTR MaLR -203 172 1 197 328 0 0 chr5 148185 148243 -202937289 - MIR SINE MIR -111 151 94 444 298 82 21 chr5 149022 149351 -202936181 - L1ME4a LINE L1 0 6121 5773 433 272 151 8 chr5 149360 149599 -202935933 - MLT1C LTR MaLR -8 459 187 751 198 38 17 chr5 149764 149974 -202935558 - MLT1C LTR MaLR -176 214 1 1141 246 107 17 chr5 151423 151825 -202933707 + MLT1C LTR MaLR 1 438 -29 602 313 9 33 chr5 152666 152877 -202932655 + MIR SINE MIR 24 229 -33 552 182 19 71 chr5 153037 153191 -202932341 - MLT2D LTR ERVL -8 406 261 888 269 32 3 chr5 153341 153623 -202931909 - MLT2D LTR ERVL -108 306 17 812 200 47 0 chr5 156899 157069 -202928463 + MER58A DNA MER1_type 46 223 -1 335 224 22 60 chr5 157173 157307 -202928225 + L1ME4a LINE L1 5966 6094 -27 2162 99 0 0 chr5 157309 157633 -202927899 - AluSx SINE Alu 0 324 1 395 250 0 49 chr5 157807 157951 -202927581 + GA-rich Low_complexity Low_complexity 1 137 0 659 228 183 0 chr5 162196 162420 -202923112 - L1MB7 LINE L1 -2 6182 5918 2852 92 11 0 chr5 162433 162803 -202922729 - THE1C LTR MaLR -1 374 1 403 183 12 0 chr5 162821 162903 -202922629 + L1M4 LINE L1 5683 5765 -409 321 333 0 41 chr5 165297 165444 -202920088 - MIR SINE MIR -8 254 114 315 213 0 0 chr5 166158 166233 -202919299 + (TG)n Simple_repeat Simple_repeat 2 76 0 464 292 111 58 chr5 166442 166685 -202918847 + MLT1J LTR MaLR 245 500 -11 905 248 50 5 chr5 167689 168068 -202917464 - L1ME LINE L1 -2805 3275 2880 338 273 80 0 chr5 168168 168256 -202917276 - L1ME LINE L1 -4309 1952 1858 522 280 149 12 chr5 168264 168432 -202917100 - L1ME LINE L1 -4436 1825 1635 339 270 109 80 chr5 168441 169077 -202916455 - L1ME LINE L1 -4682 1579 837 1963 130 7 10 chr5 169077 169376 -202916156 + AluSx SINE Alu 1 298 -14 339 270 109 80 chr5 169376 169698 -202915834 - L1ME LINE L1 -5424 837 526 334 271 30 78 chr5 170050 170216 -202915316 - MLT1J2 LTR MaLR -21 429 272 226 314 24 65 chr5 170433 170557 -202914975 + L2 LINE L2 3100 3218 -54 269 335 86 18 chr5 170748 171156 -202914376 + L2 LINE L2 2572 3239 -74 2359 179 28 13 chr5 171230 171687 -202913845 + MLT2B3 LTR ERVL 1 464 -90 217 246 0 0 chr5 171687 171744 -202913788 + (TA)n Simple_repeat Simple_repeat 2 58 0 293 256 0 0 chr5 171744 171834 -202913698 - L1MC4 LINE L1 -1339 6703 6614 264 149 0 0 chr5 171921 171968 -202913564 + (CA)n Simple_repeat Simple_repeat 2 48 0 202 259 0 35 chr5 172051 172109 -202913423 + MIR SINE MIR 12 67 -195 215 173 19 0 chr5 172251 172303 -202913229 + CT-rich Low_complexity Low_complexity 1 53 0 1021 244 17 27 chr5 173046 173341 -202912191 + MLT1E LTR MaLR 302 593 0 647 205 53 16 chr5 174428 174618 -202910914 + L1MB7 LINE L1 5987 6183 -1 885 159 0 0 chr5 174697 174829 -202910703 + FLAM_C SINE Alu 1 132 -11 237 33 0 0 chr5 174896 174926 -202910606 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 250 245 136 71 chr5 174950 175105 -202910427 + L1MC5 LINE L1 7749 7913 -48 524 292 87 14 chr5 178601 178878 -202906654 - MLT1I LTR MaLR 0 409 113 696 271 138 35 chr5 179151 179491 -202906041 + MLT1E LTR MaLR 1 375 -218 771 146 0 15 chr5 179514 179644 -202905888 - THE1B LTR MaLR -1 363 236 1271 95 0 0 chr5 179645 179813 -202905719 + L1PA7 LINE L1 5983 6150 -4 2944 86 2 0 chr5 179835 180263 -202905269 - THE1B-int LTR MaLR -1151 429 1 1700 168 75 23 chr5 180263 180609 -202904923 - THE1B LTR MaLR 0 364 1 623 271 47 5 chr5 180614 180806 -202904726 + MLT1E LTR MaLR 394 593 0 327 331 14 0 chr5 180813 180955 -202904577 + MLT1E-int LTR MaLR 15 158 -1213 270 258 56 0 chr5 181094 181183 -202904349 + MLT1E-int LTR MaLR 442 535 -836 191 288 50 12 chr5 181746 181826 -202903706 + L2 LINE L2 3185 3267 -5 220 294 234 22 chr5 181933 182117 -202903415 - L2 LINE L2 -6 3307 3085 1890 218 21 42 chr5 182244 182721 -202902811 + MLT1C LTR MaLR 1 467 0 21 57 0 0 chr5 187987 188022 -202897510 + GC_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr5 188240 188273 -202897259 + GC_rich Low_complexity Low_complexity 1 33 0 198 182 26 26 chr5 190110 190187 -202895345 + G-rich Low_complexity Low_complexity 3 79 0 26 30 0 0 chr5 192293 192326 -202893206 + GC_rich Low_complexity Low_complexity 1 33 0 408 307 0 51 chr5 193466 193756 -202891776 + C-rich Low_complexity Low_complexity 1 275 0 22 35 0 0 chr5 193900 193929 -202891603 + GC_rich Low_complexity Low_complexity 1 29 0 224 217 0 0 chr5 195403 195449 -202890083 + G-rich Low_complexity Low_complexity 5 50 0 2521 37 0 0 chr5 195687 195982 -202889550 + AluY SINE Alu 1 295 -16 201 74 0 0 chr5 196571 196598 -202888934 + (CCG)n Simple_repeat Simple_repeat 2 28 0 315 71 0 0 chr5 200197 200239 -202885293 + (T)n Simple_repeat Simple_repeat 1 42 0 220 204 0 0 chr5 200444 200493 -202885039 + CT-rich Low_complexity Low_complexity 5 53 0 232 151 12 70 chr5 200511 200597 -202884935 + CT-rich Low_complexity Low_complexity 1 81 0 252 272 10 48 chr5 201241 201344 -202884188 + G-rich Low_complexity Low_complexity 2 100 0 360 0 0 0 chr5 202415 202455 -202883077 + (CA)n Simple_repeat Simple_repeat 2 41 0 251 213 21 0 chr5 203729 203823 -202881709 + (CACG)n Simple_repeat Simple_repeat 4 99 0 433 219 0 22 chr5 203836 204019 -202881513 + (CACG)n Simple_repeat Simple_repeat 1 179 0 439 218 0 23 chr5 204049 204401 -202881131 + (CACG)n Simple_repeat Simple_repeat 1 343 0 347 233 0 14 chr5 204435 204581 -202880951 + (CACG)n Simple_repeat Simple_repeat 4 147 0 320 217 0 43 chr5 204611 204795 -202880737 + (CACG)n Simple_repeat Simple_repeat 4 179 0 * 357 263 0 0 chr5 204788 204963 -202880569 + (CA)n Simple_repeat Simple_repeat 1 175 0 217 355 0 11 chr5 205017 205110 -202880422 + (CA)n Simple_repeat Simple_repeat 1 92 0 222 191 0 0 chr5 207035 207077 -202878455 + (CGG)n Simple_repeat Simple_repeat 1 42 0 217 317 12 12 chr5 207542 207703 -202877829 + C-rich Low_complexity Low_complexity 2 162 0 265 339 0 0 chr5 210127 210254 -202875278 + HERVL LTR ERVL 907 1033 -4621 1435 166 26 12 chr5 210825 211312 -202874220 + MER50 LTR ERV1 1 711 -23 1613 177 53 29 chr5 211313 211692 -202873840 - MSTC LTR MaLR -40 388 1 463 266 120 66 chr5 211694 212028 -202873504 + HERVL LTR ERVL 1678 2029 -3735 246 347 73 0 chr5 212855 212979 -202872553 + L2 LINE L2 3178 3310 -3 476 269 62 10 chr5 213809 214017 -202871515 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr5 215148 215169 -202870363 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1484 158 57 0 chr5 220459 220705 -202864827 - AluJo SINE Alu -9 303 44 1133 303 77 0 chr5 221007 221472 -202864060 + L1MC2 LINE L1 5832 6332 -12 554 206 19 7 chr5 221478 221633 -202863899 + GA-rich Low_complexity Low_complexity 2 158 0 1072 172 62 10 chr5 221633 221842 -202863690 + AluJo SINE Alu 1 220 -92 259 211 13 40 chr5 223366 223442 -202862090 + G-rich Low_complexity Low_complexity 3 76 0 271 360 65 13 chr5 228598 228751 -202856781 + MIR3 SINE MIR 18 178 -30 332 323 45 0 chr5 228762 228917 -202856615 - MLT1B LTR MaLR -2 652 491 334 358 0 15 chr5 228932 229066 -202856466 + (CGTG)n Simple_repeat Simple_repeat 4 135 0 515 358 78 51 chr5 229726 230410 -202855122 + L1MEc LINE L1 810 1475 -4921 343 295 20 81 chr5 230543 230692 -202854840 + L1MC4 LINE L1 6563 6702 -1340 * 347 256 22 44 chr5 230682 230772 -202854760 + L1MC4 LINE L1 6615 6702 -1340 221 381 0 11 chr5 230774 230955 -202854577 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 1982 110 29 0 chr5 231440 231738 -202853794 + AluSx SINE Alu 1 306 0 431 283 23 34 chr5 234661 234838 -202850694 - MLT1C LTR MaLR -227 240 66 2205 102 0 7 chr5 236334 236638 -202848894 + AluSp SINE Alu 1 302 -11 911 211 154 0 chr5 241674 241953 -202843579 - MLT1B LTR MaLR -68 322 1 21 0 0 0 chr5 244115 244136 -202841396 + AT_rich Low_complexity Low_complexity 1 21 0 236 253 0 11 chr5 244666 244753 -202840779 + G-rich Low_complexity Low_complexity 3 88 0 3055 238 63 16 chr5 245507 245648 -202839884 - Charlie1 DNA MER1_type -2 2759 2626 2044 108 14 0 chr5 245648 245935 -202839597 + AluSg SINE Alu 2 292 -18 3055 238 63 16 chr5 245935 246340 -202839192 - Charlie1 DNA MER1_type -135 2626 2241 2350 73 0 16 chr5 246340 246643 -202838889 - AluSq SINE Alu -15 298 1 3055 238 63 16 chr5 246643 247063 -202838469 - Charlie1 DNA MER1_type -520 2241 1747 270 191 0 76 chr5 247265 247397 -202838135 + (CCCCG)n Simple_repeat Simple_repeat 1 121 0 768 211 112 12 chr5 247476 247718 -202837814 - MLT1A1 LTR MaLR -99 266 1 2032 120 0 0 chr5 251203 251509 -202834023 + AluSx SINE Alu 3 308 0 1312 260 65 38 chr5 251533 252013 -202833519 + L1MDa LINE L1 20 512 -6028 296 210 49 0 chr5 252086 252167 -202833365 + L1MA7 LINE L1 6205 6289 -2 * 640 239 54 33 chr5 252160 252292 -202833240 + L1MDa LINE L1 2454 2582 -3958 2034 100 20 13 chr5 252292 252592 -202832940 + AluSg SINE Alu 6 307 -3 640 239 54 33 chr5 252592 252789 -202832743 + L1MDa LINE L1 2582 2788 -3752 534 287 16 0 chr5 252789 252918 -202832614 - ERVL LTR ERVL -3721 2043 1913 853 217 107 4 chr5 253057 253301 -202832231 + MLT1C LTR MaLR 6 274 -193 341 324 0 0 chr5 253608 253784 -202831748 + GA-rich Low_complexity Low_complexity 4 179 0 626 215 67 53 chr5 253794 254003 -202831529 + MLT1C LTR MaLR 256 467 0 322 281 78 39 chr5 255218 255346 -202830186 - L1ME4a LINE L1 -11 6110 5978 308 338 61 25 chr5 255784 255982 -202829550 - L1ME4a LINE L1 -756 5390 5186 420 340 92 33 chr5 256013 256439 -202829093 + L1MEc LINE L1 2157 2564 -3651 245 309 12 0 chr5 256547 256628 -202828904 + L1MEc LINE L1 2794 2875 -3340 697 316 112 13 chr5 256682 257372 -202828160 + L1MEc LINE L1 2991 3748 -2467 219 286 0 0 chr5 257628 257684 -202827848 + C-rich Low_complexity Low_complexity 1 56 0 305 342 70 70 chr5 258225 258538 -202826994 - HAL1 LINE L1 -948 1559 1247 339 270 0 0 chr5 258540 258778 -202826754 + CT-rich Low_complexity Low_complexity 1 238 0 1288 189 84 3 chr5 260367 260692 -202824840 + MLT1B LTR MaLR 15 379 -11 657 298 67 53 chr5 262223 262376 -202823156 + L1MC5 LINE L1 6448 6597 -1211 2309 81 3 0 chr5 262376 262673 -202822859 - AluSx SINE Alu -14 298 1 657 298 67 53 chr5 262673 263029 -202822503 + L1MC5 LINE L1 6597 6902 -906 723 185 71 28 chr5 263065 263411 -202822121 + MSTC LTR MaLR 1 427 -1 1519 216 120 40 chr5 263411 264060 -202821472 + L1MC5 LINE L1 6994 7694 -267 2464 171 23 12 chr5 264129 264557 -202820975 - Tigger2a DNA MER2_type 0 434 2 271 260 76 18 chr5 267526 267642 -202817890 + LTR50 LTR ERVL 327 447 -76 2124 165 49 180 chr5 267985 268795 -202816737 - L1MB3 LINE L1 0 6183 5480 1804 171 3 3 chr5 270091 270396 -202815136 - AluJb SINE Alu -7 305 1 1452 188 124 3 chr5 270421 270767 -202814765 + L1MC2 LINE L1 5941 6328 -16 429 260 19 0 chr5 272014 272118 -202813414 - MER117 DNA MER1_type -53 144 39 29 28 0 0 chr5 272972 273008 -202812524 + AT_rich Low_complexity Low_complexity 1 36 0 234 286 13 0 chr5 275126 275203 -202810329 + L1MC4 LINE L1 7960 8037 -5 591 248 170 47 chr5 277180 277588 -202807944 - MLT1H1 LTR MaLR 0 555 44 188 228 18 0 chr5 278348 278405 -202807127 + (TG)n Simple_repeat Simple_repeat 2 59 0 520 271 67 5 chr5 279215 279419 -202806113 - MER20 DNA MER1_type 0 219 4 239 328 106 29 chr5 279439 279787 -202805745 - LTR16C LTR ERVL -36 455 81 1272 184 104 12 chr5 280607 280934 -202804598 + MLT1A1 LTR MaLR 1 357 -8 473 249 110 29 chr5 282368 282541 -202802991 + MER58A DNA MER1_type 35 221 -3 1900 142 0 34 chr5 282741 283064 -202802468 + AluSx SINE Alu 1 312 0 1870 158 10 0 chr5 283567 283864 -202801668 + AluJb SINE Alu 1 300 -12 1258 252 102 21 chr5 283945 284377 -202801155 - MLT1C LTR MaLR 0 467 1 22 0 0 0 chr5 284396 284418 -202801114 + AT_rich Low_complexity Low_complexity 1 22 0 4703 87 17 17 chr5 285580 286214 -202799318 - MER51A LTR ERV1 0 634 1 354 325 163 0 chr5 287076 287242 -202798290 - MIR SINE MIR -7 255 63 312 180 36 18 chr5 287387 287498 -202798034 + (CAGAGA)n Simple_repeat Simple_repeat 1 113 0 180 333 61 8 chr5 289517 289649 -202795883 - L2 LINE L2 -812 2502 2364 2083 104 7 0 chr5 289763 290051 -202795481 - AluSx SINE Alu -22 290 1 197 310 133 5 chr5 290836 291039 -202794493 - L2 LINE L2 -1102 2212 1984 2016 115 0 33 chr5 291359 291664 -202793868 + AluSx SINE Alu 1 295 -17 391 321 19 19 chr5 292508 292670 -202792862 + (CGTG)n Simple_repeat Simple_repeat 1 162 0 221 263 25 12 chr5 292678 292758 -202792774 + (TG)n Simple_repeat Simple_repeat 1 81 0 352 241 0 14 chr5 293628 293773 -202791759 + (CTGGGG)n Simple_repeat Simple_repeat 1 143 0 2309 171 18 2 chr5 294144 294541 -202790991 + MER57A LTR ERV1 1 403 0 1018 247 87 20 chr5 297345 297701 -202787831 - MLT1B LTR MaLR -7 383 4 308 272 48 32 chr5 298674 298799 -202786733 - L1ME4a LINE L1 -6 6115 5989 373 242 0 0 chr5 298961 299052 -202786480 - L1ME4a LINE L1 -204 5960 5870 * 2566 269 35 34 chr5 299050 299949 -202785583 - L1M4 LINE L1 -1946 4200 3207 1833 183 0 10 chr5 299949 300261 -202785271 - AluSx SINE Alu -3 309 1 2566 269 35 34 chr5 300261 300508 -202785024 - L1M4 LINE L1 -2939 3207 2962 23 0 0 0 chr5 300614 300637 -202784895 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr5 300824 300846 -202784686 + AT_rich Low_complexity Low_complexity 1 22 0 1722 171 0 4 chr5 300848 301111 -202784421 - AluJb SINE Alu -33 279 18 2249 116 3 0 chr5 301122 301424 -202784108 - AluSx SINE Alu -9 303 1 358 310 97 57 chr5 301464 301902 -202783630 - L1 LINE L1 -2742 3404 2804 1140 195 108 7 chr5 303049 303456 -202782076 + LTR45B LTR ERV1 3 603 0 182 197 148 33 chr5 304214 304275 -202781257 - MIR SINE MIR -75 133 66 2066 277 48 2 chr5 304985 305614 -202779918 - L1MB5 LINE L1 0 6174 5517 401 86 38 153 chr5 306043 306366 -202779166 + (CGGTG)n Simple_repeat Simple_repeat 1 285 0 2038 130 0 11 chr5 308732 309040 -202776492 - AluSx SINE Alu 0 305 1 1227 183 108 37 chr5 309041 309336 -202776196 - MLT2C2 LTR ERVL -146 318 3 237 125 4 1 chr5 309371 309405 -202776127 + MLT1L LTR MaLR 277 411 -100 705 119 0 2 chr5 313019 313263 -202772269 + AluSx SINE Alu 1 294 -16 501 316 30 0 chr5 315315 315483 -202770049 - MER58A DNA MER1_type -9 215 43 1093 129 0 0 chr5 315744 315891 -202769641 + AluSg/x SINE Alu 154 300 -12 369 109 0 0 chr5 315891 315946 -202769586 + (TA)n Simple_repeat Simple_repeat 2 56 0 38 39 0 0 chr5 315954 316006 -202769526 + AT_rich Low_complexity Low_complexity 1 52 0 291 331 57 57 chr5 316038 316334 -202769198 - L1MC/D LINE L1 -1944 5864 5569 383 277 64 96 chr5 316343 316908 -202768624 - L1MEd LINE L1 -968 1522 895 2370 73 0 33 chr5 316988 317291 -202768241 + AluSg SINE Alu 1 293 -17 2132 106 3 3 chr5 318058 318370 -202767162 - AluSx SINE Alu 0 312 1 271 359 48 4 chr5 318861 319240 -202766292 + L1ME LINE L1 5202 5603 -559 1198 262 43 3 chr5 320021 320372 -202765160 - MLT1A1 LTR MaLR 0 365 1 2180 128 6 6 chr5 320551 320863 -202764669 + AluSx SINE Alu 1 312 0 2174 123 7 0 chr5 321080 321365 -202764167 + AluSx SINE Alu 1 287 -25 22 0 0 0 chr5 322853 322875 -202762657 + GC_rich Low_complexity Low_complexity 1 22 0 253 275 0 78 chr5 323641 323808 -202761724 + G-rich Low_complexity Low_complexity 3 156 0 316 291 127 45 chr5 324789 325033 -202760499 - L1MC4a LINE L1 -1487 6321 6058 1776 154 10 23 chr5 325056 325362 -202760170 - AluJo SINE Alu -8 304 3 305 282 106 65 chr5 327856 328266 -202757266 + MLT1B LTR MaLR 1 459 -8 193 130 0 74 chr5 328528 328582 -202756950 + (TTACG)n Simple_repeat Simple_repeat 4 53 0 965 188 96 135 chr5 330872 331228 -202754304 - MLT1C LTR MaLR -42 425 7 7284 161 95 8 chr5 331726 333450 -202752082 + L1MCa LINE L1 17 1984 -4442 3270 219 30 6 chr5 333445 333538 -202751994 + L1MCa LINE L1 3222 3311 -3115 * 2175 130 0 10 chr5 333538 333838 -202751694 + AluSx SINE Alu 1 297 -15 3270 219 30 6 chr5 333838 334694 -202750838 + L1MCa LINE L1 3311 4194 -2232 699 143 21 21 chr5 334751 334891 -202750641 + L1MC1 LINE L1 2043 2182 -4244 4893 188 49 60 chr5 334903 337333 -202748199 + L1MC1 LINE L1 4217 8065 0 359 200 21 11 chr5 339227 339322 -202746210 + MER53 DNA DNA 23 118 -71 309 298 152 36 chr5 339332 339661 -202745871 + MLT1H LTR MaLR 112 478 -71 2214 113 7 3 chr5 340961 341261 -202744271 + AluSx SINE Alu 1 301 -11 537 262 167 40 chr5 342149 342519 -202743013 + MER31A LTR ERV1 7 427 -39 4603 84 20 55 chr5 342851 343567 -202741965 - LTR8 LTR ERV1 0 691 1 508 203 23 16 chr5 343935 344063 -202741469 + MER5B DNA MER1_type 1 129 -49 4698 223 24 28 chr5 346156 347089 -202738443 + L1MB5 LINE L1 3987 4915 -1231 204 40 0 0 chr5 347089 347114 -202738418 + (TAA)n Simple_repeat Simple_repeat 3 27 0 4698 223 24 28 chr5 347114 347438 -202738094 + L1MB5 LINE L1 4915 5239 -907 1787 125 14 7 chr5 347438 347718 -202737814 - THE1B LTR MaLR 0 364 83 2984 217 117 8 chr5 347740 348592 -202736940 + L1MB5 LINE L1 5231 6174 0 1920 174 43 34 chr5 348606 349154 -202736378 + MLT2A2 LTR ERVL 1 554 0 266 265 20 10 chr5 349161 349263 -202736269 + L1ME LINE L1 5669 5771 -350 462 220 0 0 chr5 349408 349585 -202735947 + (TA)n Simple_repeat Simple_repeat 2 178 0 2115 59 0 0 chr5 349693 349948 -202735584 + AluY SINE Alu 54 308 -3 1953 111 4 4 chr5 350962 351233 -202734299 - AluSq SINE Alu -17 296 26 27 49 0 0 chr5 351675 351716 -202733816 + AT_rich Low_complexity Low_complexity 1 41 0 338 100 0 0 chr5 352309 352359 -202733173 - MADE1 DNA Mariner 0 80 31 271 68 23 0 chr5 352399 352443 -202733089 + MADE1 DNA Mariner 36 80 0 21 36 0 0 chr5 353387 353415 -202732117 + AT_rich Low_complexity Low_complexity 1 28 0 1483 237 95 31 chr5 354914 355588 -202729944 + MER97a DNA MER1_type? 167 883 -11 1752 146 173 19 chr5 355588 355959 -202729573 + MSTA LTR MaLR 1 428 0 413 181 96 0 chr5 355959 356053 -202729479 + MLT1B LTR MaLR 288 390 0 1262 282 120 0 chr5 356053 356577 -202728955 + L1MEc LINE L1 255 841 -5555 * 3540 258 36 33 chr5 356559 358984 -202726548 + L1MEc LINE L1 1258 3639 -2576 3653 251 65 10 chr5 358986 360237 -202725295 + L1MEc LINE L1 4086 5406 -809 2267 92 3 23 chr5 360918 361222 -202724310 - AluSx SINE Alu -14 298 1 233 322 83 0 chr5 361659 361923 -202723609 - L1MEc LINE L1 -3385 2830 2545 312 278 125 17 chr5 361964 362140 -202723392 - L1MEc LINE L1 -3874 2522 2328 243 354 0 22 chr5 363152 363333 -202722199 + (TAGG)n Simple_repeat Simple_repeat 2 178 0 203 344 0 11 chr5 365408 365498 -202720034 + (CATA)n Simple_repeat Simple_repeat 1 89 0 240 35 0 0 chr5 416207 416236 -202669296 + (GGGGA)n Simple_repeat Simple_repeat 3 31 0 311 306 45 0 chr5 416302 416436 -202669096 + MER70B LTR ERVL 15 154 -424 1241 240 52 3 chr5 416779 417141 -202668391 + MER70B LTR ERVL 199 578 0 588 257 59 21 chr5 417752 417989 -202667543 + MER33 DNA MER1_type 5 250 -74 248 196 0 36 chr5 418187 418243 -202667289 + GA-rich Low_complexity Low_complexity 3 56 0 502 188 0 23 chr5 418351 418484 -202667048 + GA-rich Low_complexity Low_complexity 4 133 0 1070 31 0 0 chr5 419041 419221 -202666311 + L1PA3 LINE L1 6002 6181 0 204 40 0 0 chr5 419582 419607 -202665925 + (A)n Simple_repeat Simple_repeat 1 25 0 805 188 0 0 chr5 419623 419751 -202665781 + AluJ SINE Alu 14 141 -171 987 224 0 0 chr5 419791 419974 -202665558 + AluJ SINE Alu 121 303 -9 207 258 32 0 chr5 421333 421395 -202664137 - L2 LINE L2 -945 2369 2306 343 283 26 91 chr5 422852 423082 -202662450 - L1MEc LINE L1 -4625 1590 1376 407 312 47 13 chr5 423140 423438 -202662094 - L1MEc LINE L1 -4862 1343 1036 2077 157 0 0 chr5 423441 423741 -202661791 - AluSx SINE Alu -12 300 1 24 0 0 0 chr5 423838 423862 -202661670 + AT_rich Low_complexity Low_complexity 1 24 0 421 259 9 0 chr5 423876 423992 -202661540 - L1MA10 LINE L1 -8 6326 6210 376 180 7 167 chr5 424105 424211 -202661321 - L1ME LINE L1 -483 5683 5606 2306 124 0 6 chr5 424211 424525 -202661007 - AluSx SINE Alu 0 312 1 376 180 7 167 chr5 424525 424568 -202660964 - L1ME LINE L1 -560 5606 5558 263 128 0 0 chr5 424563 424602 -202660930 + L1M4 LINE L1 3531 3569 -2577 * 1774 169 28 22 chr5 424602 425175 -202660357 - LTR10E LTR ERV1 -6 627 1 449 302 39 12 chr5 425175 425430 -202660102 + L1M4 LINE L1 3580 3841 -2305 1901 141 61 0 chr5 425441 425718 -202659814 + AluSq SINE Alu 1 294 -19 1126 97 58 0 chr5 425718 425872 -202659660 + AluSg/x SINE Alu 132 294 -16 366 176 0 0 chr5 425951 426019 -202659513 - L1MEc LINE L1 -5591 805 738 * 41553 32 23 1 chr5 426018 432034 -202653498 - L1PA3 LINE L1 0 6155 5 1155 316 65 15 chr5 432037 432636 -202652896 - L1MEc LINE L1 -5643 753 125 242 211 42 21 chr5 432683 432778 -202652754 + (TG)n Simple_repeat Simple_repeat 1 97 0 351 201 75 19 chr5 433618 433777 -202651755 + (CA)n Simple_repeat Simple_repeat 1 168 0 222 91 0 0 chr5 433803 433836 -202651696 + (CA)n Simple_repeat Simple_repeat 1 33 0 1858 47 0 5 chr5 435785 436000 -202649532 - AluY SINE Alu -16 295 82 587 294 60 16 chr5 436115 436367 -202649165 - HAL1 LINE L1 -2226 281 19 1349 86 0 17 chr5 440945 441120 -202644412 - AluSg/x SINE Alu -19 291 120 1274 137 0 0 chr5 441457 441671 -202643861 + AluSg/x SINE Alu 112 325 0 232 242 73 40 chr5 441858 441982 -202643550 + L1MCa LINE L1 1282 1409 -5017 16664 94 40 26 chr5 442168 444708 -202640824 + Charlie3 DNA MER1_type 1 2575 -135 345 22 0 0 chr5 444711 444756 -202640776 - MADE1 DNA Mariner -1 79 35 388 314 83 12 chr5 444787 444956 -202640576 + L1MCa LINE L1 1833 2013 -4594 189 0 0 0 chr5 445133 445154 -202640378 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1713 163 3 18 chr5 445171 445454 -202640078 - AluJb SINE Alu -33 279 1 462 315 47 17 chr5 445722 445957 -202639575 + L1ME LINE L1 637 878 -5652 1145 288 51 48 chr5 446244 446285 -202639247 + L1ME LINE L1 1085 1124 -5416 2621 50 0 0 chr5 446285 446586 -202638946 + AluY SINE Alu 1 301 -10 1145 288 51 48 chr5 446586 447109 -202638423 + L1ME LINE L1 1124 1657 -4883 2480 84 0 0 chr5 447109 447419 -202638113 + AluY SINE Alu 1 310 -1 1145 288 51 48 chr5 447419 447927 -202637605 + L1ME LINE L1 1657 2162 -4378 1489 199 201 30 chr5 447927 448420 -202637112 - LTR8A LTR ERV1 -150 577 1 793 287 45 33 chr5 448445 448779 -202636753 + L1ME2 LINE L1 5797 6134 -30 1566 228 133 79 chr5 448828 449533 -202635999 + LTR1B LTR ERV1 3 745 -81 2238 112 14 0 chr5 449863 450159 -202635373 + AluSx SINE Alu 1 300 -12 1099 224 187 45 chr5 450189 450376 -202635156 + L1M4 LINE L1 3871 4030 -2116 2204 132 0 0 chr5 450376 450679 -202634853 + AluSx SINE Alu 1 303 -9 1099 224 187 45 chr5 450679 450983 -202634549 + L1M4 LINE L1 4030 4289 -1857 1904 183 3 0 chr5 450983 451294 -202634238 + AluJb SINE Alu 1 312 0 1099 224 187 45 chr5 451294 451511 -202634021 + L1M4 LINE L1 4289 4681 -1465 562 108 0 0 chr5 451514 451597 -202633935 - AluSp SINE Alu -12 301 219 1098 126 13 0 chr5 451599 451750 -202633782 - AluSp SINE Alu -160 153 1 412 303 7 0 chr5 451756 451901 -202633631 + L1M4 LINE L1 4687 4832 -1314 326 279 12 0 chr5 451896 451982 -202633550 - L1M4 LINE L1 -2780 3366 3280 * 281 314 12 0 chr5 451986 452072 -202633460 - L1M4 LINE L1 -2780 3366 3280 331 279 12 0 chr5 452076 452162 -202633370 - L1M4 LINE L1 -2780 3366 3280 247 325 12 0 chr5 452166 452249 -202633283 - L1M4 LINE L1 -2780 3366 3283 304 322 0 0 chr5 452256 452343 -202633189 - L1M4 LINE L1 -2780 3366 3280 236 349 12 0 chr5 452347 452433 -202633099 - L1M4 LINE L1 -2780 3366 3280 321 360 0 0 chr5 452437 452562 -202632970 - L1M4 LINE L1 -2780 3366 3242 310 235 29 11 chr5 453050 453134 -202632398 - MER69 DNA AcHobo 0 2526 2445 2413 106 0 0 chr5 453134 453437 -202632095 + AluSc SINE Alu 4 306 -3 310 235 29 11 chr5 453437 453469 -202632063 - MER69 DNA AcHobo -81 2445 61 612 169 0 0 chr5 453552 453682 -202631850 + (CA)n Simple_repeat Simple_repeat 2 131 0 22 0 0 0 chr5 455894 455916 -202629616 + AT_rich Low_complexity Low_complexity 1 22 0 279 338 7 7 chr5 455936 456075 -202629457 + (CA)n Simple_repeat Simple_repeat 2 140 0 1826 256 109 77 chr5 457181 457669 -202627863 - L1MEc LINE L1 -2665 3875 3404 2236 110 7 0 chr5 457669 457959 -202627573 - AluSx SINE Alu -13 299 8 1826 256 109 77 chr5 457959 458644 -202626888 - L1MEc LINE L1 -3136 3404 2664 1075 260 82 42 chr5 458684 459236 -202626296 - L1MEc LINE L1 -4109 2612 2027 2852 3 0 7 chr5 459236 459541 -202625991 - AluYa5 SINE Alu -8 303 1 1075 260 82 42 chr5 459541 459660 -202625872 - L1MEc LINE L1 -4694 2027 1914 2099 222 55 0 chr5 459722 460213 -202625319 + L1MA4A LINE L1 1 518 -6691 547 268 98 5 chr5 460209 460403 -202625129 + L1MA4A LINE L1 1501 1724 -5485 * 3591 172 33 32 chr5 460404 460430 -202625102 + L1MA4A LINE L1 3394 3418 -3947 2364 154 9 37 chr5 460430 460866 -202624666 + MSTB LTR MaLR 1 424 -2 3591 172 33 32 chr5 460866 464005 -202621527 + L1MA4A LINE L1 3418 6634 -731 2305 123 0 0 chr5 464005 464307 -202621225 + AluSx SINE Alu 7 308 -4 3591 172 33 32 chr5 464307 465036 -202620496 + L1MA4A LINE L1 6634 7360 -5 618 309 94 18 chr5 465038 465527 -202620005 - L1MEc LINE L1 -4673 1867 1342 1660 158 42 3 chr5 465531 465841 -202619691 + MER47A DNA MER2_type 2 323 -43 25 51 0 0 chr5 465872 465911 -202619621 + AT_rich Low_complexity Low_complexity 1 39 0 595 321 61 31 chr5 465929 466019 -202619513 - L1MEc LINE L1 -5344 1377 1291 2306 105 7 0 chr5 466019 466315 -202619217 - AluSp SINE Alu -15 298 1 595 321 61 31 chr5 466315 466766 -202618766 - L1MEc LINE L1 -5430 1291 820 286 242 116 0 chr5 466795 466890 -202618642 + L1MEc LINE L1 887 992 -5404 228 279 83 25 chr5 466896 467100 -202618432 - L1MDa LINE L1 -4924 1797 1582 464 305 66 34 chr5 467143 467463 -202618069 - L1MDa LINE L1 -5038 1492 1162 2446 88 0 3 chr5 467508 467813 -202617719 + AluSx SINE Alu 1 304 -8 1827 147 3 49 chr5 467835 468141 -202617391 + AluJb SINE Alu 1 292 -20 189 0 0 0 chr5 468142 468163 -202617369 + (TA)n Simple_repeat Simple_repeat 2 22 0 194 333 118 7 chr5 468251 468404 -202617128 - MIR SINE MIR -60 202 33 247 263 0 91 chr5 469474 469573 -202615959 - MIR SINE MIR -167 95 6 539 241 10 13 chr5 469907 470064 -202615468 - MER63 DNA MER1_type -58 778 3 21 36 0 0 chr5 470120 470148 -202615384 + AT_rich Low_complexity Low_complexity 1 28 0 1637 114 25 65 chr5 472579 472939 -202612593 - MER4A LTR ERV1 0 664 261 570 133 10 10 chr5 472939 473037 -202612495 - MER4A LTR ERV1 -566 98 1 201 119 0 134 chr5 474277 474344 -202611188 + (CCCCCG)n Simple_repeat Simple_repeat 5 62 0 745 86 19 0 chr5 474911 475016 -202610516 - MER30 DNA MER1_type 0 230 124 1190 118 0 15 chr5 475016 475220 -202610312 + L1P5 LINE L1 5289 5489 -662 180 0 0 0 chr5 476756 476776 -202608756 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 220 282 32 65 chr5 476780 476904 -202608628 - L2 LINE L2 -14 3299 3180 312 286 162 11 chr5 476931 477116 -202608416 + MIR SINE MIR 2 214 -48 347 205 0 43 chr5 478406 478591 -202606941 + (CA)n Simple_repeat Simple_repeat 2 178 0 306 251 0 0 chr5 478612 478840 -202606692 + (CA)n Simple_repeat Simple_repeat 1 228 0 204 326 32 21 chr5 478945 479040 -202606492 + L3 LINE CR1 1246 1341 -236 253 178 42 0 chr5 480647 480765 -202604767 + (CA)n Simple_repeat Simple_repeat 2 124 0 958 284 57 3 chr5 481485 481816 -202603716 + MLT1A2 LTR MaLR 26 374 0 2199 138 3 0 chr5 483477 483788 -202601744 + AluSq SINE Alu 1 312 -1 606 193 103 167 chr5 484301 484649 -202600883 - MLT1A2 LTR MaLR -48 326 1 320 262 2 43 chr5 484654 484748 -202600784 + MLT1C LTR MaLR 331 460 -45 535 167 113 20 chr5 484921 485071 -202600461 + ORSL DNA AcHobo 104 267 -8 776 270 138 5 chr5 485486 485878 -202599654 - MLT1C LTR MaLR 0 467 24 209 130 0 43 chr5 486580 486626 -202598906 + (TGGGGG)n Simple_repeat Simple_repeat 4 47 0 214 171 0 0 chr5 486708 486749 -202598783 + CT-rich Low_complexity Low_complexity 2 42 0 286 236 8 57 chr5 487846 487969 -202597563 + (CACG)n Simple_repeat Simple_repeat 1 117 0 223 248 0 60 chr5 489618 489735 -202595797 + (CACCC)n Simple_repeat Simple_repeat 3 112 0 369 282 91 112 chr5 489898 490238 -202595294 - L1ME4a LINE L1 -96 6025 5693 241 297 123 36 chr5 490279 490474 -202595058 - MER58C DNA MER1_type 0 215 4 305 340 77 19 chr5 490474 490630 -202594902 - L1ME4a LINE L1 -481 5640 5476 817 175 35 0 chr5 490887 491058 -202594474 - L1MA4 LINE L1 -8 6292 6116 2144 107 37 10 chr5 491061 491514 -202594018 + AluSx SINE Alu 1 461 0 3760 184 13 5 chr5 491514 492265 -202593267 - L1MA4A LINE L1 -175 6128 5372 458 175 79 21 chr5 492267 492412 -202593120 + L1ME LINE L1 5254 5402 -770 2360 120 0 0 chr5 492441 492749 -202592783 - AluSx SINE Alu -4 308 1 1997 112 10 56 chr5 492936 493240 -202592292 - AluSx SINE Alu -20 292 3 9139 35 7 0 chr5 493623 495543 -202589989 - L1PA5 LINE L1 -5 6149 4222 656 291 103 19 chr5 497570 497790 -202587742 - L1MB7 LINE L1 -73 6111 5875 2395 78 0 7 chr5 497790 498086 -202587446 - AluY SINE Alu -17 294 1 656 291 103 19 chr5 498086 498117 -202587415 - L1MB7 LINE L1 -309 5875 5848 941 156 88 34 chr5 498758 498963 -202586569 + MLT1A1 LTR MaLR 139 354 -11 405 329 43 18 chr5 499006 499170 -202586362 - L1MEd LINE L1 -5030 1089 922 402 269 157 15 chr5 501433 501630 -202583902 + L1ME LINE L1 5586 5810 -311 613 247 110 46 chr5 502314 502738 -202582794 - MLT1D LTR MaLR -10 457 30 292 157 114 0 chr5 505055 505125 -202580407 - MER5A DNA MER1_type -65 124 47 2270 78 3 3 chr5 506358 506664 -202578868 - AluSp SINE Alu -7 306 1 1235 142 43 114 chr5 506674 506999 -202578533 - AluJb SINE Alu 0 302 1 421 235 0 43 chr5 507428 507615 -202577917 + C-rich Low_complexity Low_complexity 2 180 0 778 162 0 0 chr5 510701 510818 -202574714 + FLAM_C SINE Alu 1 117 -16 1179 162 44 0 chr5 511608 511812 -202573720 + AluJb SINE Alu 85 297 -15 503 141 0 0 chr5 512053 512124 -202573408 - FLAM SINE Alu -24 119 49 1924 118 0 4 chr5 512700 512999 -202572533 - AluY SINE Alu 0 310 13 1555 92 14 0 chr5 513002 513219 -202572313 + AluSg/x SINE Alu 90 309 -1 578 277 16 41 chr5 513512 513720 -202571812 - L2 LINE L2 0 3313 3110 1920 144 10 13 chr5 513720 513840 -202571692 + AluJb SINE Alu 1 120 -192 459 0 0 0 chr5 513840 513891 -202571641 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1920 144 10 13 chr5 513891 514083 -202571449 + AluJb SINE Alu 120 312 0 578 277 16 41 chr5 514083 514116 -202571416 - L2 LINE L2 -203 3110 3078 304 111 93 0 chr5 515084 515138 -202570394 - MADE1 DNA Mariner -21 59 1 235 366 35 25 chr5 515232 515434 -202570098 - L2 LINE L2 -199 3073 2870 288 264 33 8 chr5 515464 515585 -202569947 - L2 LINE L2 -339 2974 2851 227 179 54 18 chr5 522351 522407 -202563125 - MLT2D LTR ERVL -128 286 229 235 160 20 20 chr5 523260 523310 -202562222 - MLT2D LTR ERVL -116 298 249 189 0 0 0 chr5 524152 524173 -202561359 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 204 135 0 0 chr5 524952 524989 -202560543 + (TTC)n Simple_repeat Simple_repeat 3 39 0 233 176 0 0 chr5 526894 526945 -202558587 - Alu SINE Alu -4 298 248 276 276 129 64 chr5 527403 527903 -202557629 - L1ME LINE L1 -347 5823 5303 2143 128 0 0 chr5 527914 528226 -202557306 - AluSx SINE Alu 0 312 1 297 302 83 18 chr5 528342 528511 -202557021 - L2 LINE L2 -433 2881 2702 1325 304 53 20 chr5 529171 530155 -202555377 + L1ME1 LINE L1 4976 5994 -172 2810 176 36 2 chr5 530870 531348 -202554184 - LOR1a LTR ERV1 0 497 4 743 239 46 10 chr5 532616 532813 -202552719 - L1MA10 LINE L1 -10 6324 6121 2146 97 10 16 chr5 534182 534493 -202551039 - AluSg SINE Alu -1 309 1 473 240 118 36 chr5 534695 535084 -202550448 + MER77 LTR ERV1 1 503 -102 237 262 0 0 chr5 537327 537388 -202548144 - MER20B DNA MER1_type -242 541 481 565 267 117 114 chr5 537966 538464 -202547068 - L1MEd LINE L1 -4960 1159 661 738 196 0 8 chr5 538518 538651 -202546881 - FLAM_A SINE Alu 0 133 2 580 133 0 10 chr5 539126 539224 -202546308 + MER4A LTR ERV1 2 98 -566 1624 151 9 25 chr5 539224 539575 -202545957 + MER4A LTR ERV1 261 664 0 682 210 36 6 chr5 539824 539991 -202545541 + L1MD1 LINE L1 6071 6242 0 2204 89 7 0 chr5 540342 540659 -202544873 + AluSc SINE Alu 1 319 0 1406 161 103 4 chr5 541659 541932 -202543600 - AluJb SINE Alu -12 300 1 300 301 127 18 chr5 542065 542231 -202543301 - MIR SINE MIR -50 212 29 1359 80 0 0 chr5 542579 542755 -202542777 + AluSc SINE Alu 134 309 0 621 206 0 0 chr5 542888 543014 -202542518 + MLT2B2 LTR ERVL 1 126 -389 844 231 163 10 chr5 594131 594425 -202491107 - MER44D DNA MER2_type 0 609 1 686 173 23 30 chr5 594651 594784 -202490748 - FLAM_C SINE Alu -1 132 1 213 282 59 24 chr5 600459 600544 -202484988 + L2 LINE L2 3183 3270 -2 1604 180 38 11 chr5 604691 605072 -202480460 - MLT1B LTR MaLR 0 396 1 657 238 74 0 chr5 605185 605374 -202480158 - MLT1A1 LTR MaLR -16 349 147 278 311 38 0 chr5 605746 605878 -202479654 - L1MC5 LINE L1 -1130 6831 6695 2237 84 10 0 chr5 608623 608921 -202476611 - AluSp SINE Alu -12 301 1 273 348 73 0 chr5 609145 609323 -202476209 + L1M4 LINE L1 2964 3154 -2992 231 365 0 10 chr5 609875 609979 -202475553 + L1M4 LINE L1 3853 3955 -2191 335 240 69 8 chr5 610298 610513 -202475019 + Charlie5 DNA MER1_type 2341 2624 0 213 358 0 0 chr5 611430 611606 -202473926 + (CAGGT)n Simple_repeat Simple_repeat 3 178 0 336 258 53 13 chr5 612599 612750 -202472782 + Charlie8 DNA MER1_type 76 232 -2185 440 293 47 0 chr5 613222 613372 -202472160 + MER58A DNA MER1_type 40 196 -28 326 353 0 8 chr5 614393 614526 -202471006 + (TG)n Simple_repeat Simple_repeat 1 132 0 208 258 11 11 chr5 614540 614633 -202470899 + (TG)n Simple_repeat Simple_repeat 1 93 0 278 258 12 24 chr5 614677 614844 -202470688 + (TATG)n Simple_repeat Simple_repeat 1 165 0 206 214 0 0 chr5 614851 614893 -202470639 + (TG)n Simple_repeat Simple_repeat 1 42 0 262 309 49 8 chr5 616090 616213 -202469319 - HAL1 LINE L1 -1364 1143 1016 2258 114 0 0 chr5 616973 617281 -202468251 - AluSx SINE Alu -4 308 1 445 171 170 24 chr5 619428 619582 -202465950 - MLT1D LTR MaLR -215 184 22 323 304 40 8 chr5 620765 620890 -202464642 - Looper DNA T2_type -80 1478 1350 775 263 191 3 chr5 621369 621689 -202463843 - Looper DNA T2_type -306 1252 873 788 269 82 31 chr5 621862 622407 -202463125 - Looper DNA T2_type -917 641 29 389 281 178 43 chr5 622718 623116 -202462416 - MLT1C LTR MaLR -12 455 4 666 184 11 10 chr5 630603 630897 -202454635 + (CACCC)n Simple_repeat Simple_repeat 1 294 0 235 229 16 0 chr5 630900 630961 -202454571 + (CCCCAG)n Simple_repeat Simple_repeat 2 63 0 1586 147 73 18 chr5 633958 634244 -202451288 - AluJo SINE Alu -10 302 1 217 269 0 13 chr5 636505 636583 -202448949 + CT-rich Low_complexity Low_complexity 3 79 0 460 191 107 30 chr5 638222 638353 -202447179 + Tigger1 DNA MER2_type 22 162 -2256 801 223 128 0 chr5 638353 638595 -202446937 + Tigger1 DNA MER2_type 115 387 -2031 2150 111 0 13 chr5 643600 643907 -202441625 - AluSx SINE Alu -5 307 5 304 364 6 11 chr5 647489 647665 -202437867 + (TG)n Simple_repeat Simple_repeat 1 175 0 466 260 14 41 chr5 647810 648187 -202437345 + (TG)n Simple_repeat Simple_repeat 1 366 0 339 305 0 68 chr5 648177 648367 -202437165 + (CGTG)n Simple_repeat Simple_repeat 2 178 0 * 491 261 13 22 chr5 648277 648821 -202436711 + (TG)n Simple_repeat Simple_repeat 1 538 0 375 359 0 6 chr5 653577 653758 -202431774 + (CA)n Simple_repeat Simple_repeat 1 180 0 272 392 0 0 chr5 653785 653938 -202431594 + (CA)n Simple_repeat Simple_repeat 2 154 0 219 401 0 6 chr5 654013 654185 -202431347 + (CA)n Simple_repeat Simple_repeat 2 172 0 * 313 302 0 62 chr5 654159 654351 -202431181 + (CATG)n Simple_repeat Simple_repeat 1 180 0 287 280 34 46 chr5 654401 654576 -202430956 + (CATG)n Simple_repeat Simple_repeat 1 173 0 * 332 391 0 0 chr5 654504 654678 -202430854 + (CA)n Simple_repeat Simple_repeat 2 175 0 596 317 12 32 chr5 654679 654928 -202430604 - ERVL LTR ERVL -330 5434 5191 404 350 65 16 chr5 655239 655548 -202429984 - MLT1I LTR MaLR -25 384 61 321 383 52 22 chr5 655620 655850 -202429682 - ERVL LTR ERVL -936 4828 4592 904 297 60 21 chr5 655928 656308 -202429224 - ERVL LTR ERVL -1271 4493 4099 700 294 102 9 chr5 656318 656757 -202428775 + L1MEc LINE L1 1066 1545 -4851 284 182 0 0 chr5 656762 656817 -202428715 + L1MCa LINE L1 1513 1567 -4859 284 182 0 0 chr5 656822 656877 -202428655 + L1MCa LINE L1 1513 1567 -4859 284 182 0 0 chr5 656882 656937 -202428595 + L1MCa LINE L1 1513 1567 -4859 284 182 0 0 chr5 656942 656997 -202428535 + L1MCa LINE L1 1513 1567 -4859 539 306 139 28 chr5 657002 657325 -202428207 + L1MCa LINE L1 1513 1967 -4555 929 245 167 23 chr5 657325 657366 -202428166 + L1MCa LINE L1 2224 2258 -4168 1712 158 25 3 chr5 657366 657651 -202427881 + AluSx SINE Alu 1 291 -21 929 245 167 23 chr5 657651 657932 -202427600 + L1MCa LINE L1 2258 2497 -3929 2082 134 0 6 chr5 657932 658245 -202427287 + AluSx SINE Alu 1 311 -1 929 245 167 23 chr5 658245 658707 -202426825 + L1MCa LINE L1 2497 3092 -3334 231 260 41 14 chr5 658709 658782 -202426750 - MLT1J2 LTR MaLR -304 146 72 2052 147 0 0 chr5 658906 659212 -202426320 + AluSx SINE Alu 1 306 -6 280 224 0 0 chr5 659227 659276 -202426256 + L1ME1 LINE L1 37 85 -6311 1543 268 70 25 chr5 659288 659946 -202425586 + L1ME1 LINE L1 577 1118 -4995 1734 245 63 40 chr5 659953 660631 -202424901 + L1ME1 LINE L1 2454 3147 -3068 1971 259 106 24 chr5 660650 660798 -202424734 + L1ME1 LINE L1 4692 4826 -1409 1424 193 66 39 chr5 660798 661160 -202424372 - MLT1A2 LTR MaLR -2 372 1 1971 259 106 24 chr5 661160 662275 -202423257 + L1ME1 LINE L1 4826 6078 -157 1692 189 0 0 chr5 662275 662556 -202422976 + AluSx SINE Alu 28 308 -4 1971 259 106 24 chr5 662556 662722 -202422810 + L1ME1 LINE L1 6078 6229 -6 1628 256 72 4 chr5 662818 663302 -202422230 - L1M4 LINE L1 -1429 4717 4201 324 341 67 0 chr5 663304 663483 -202422049 - ERVL LTR ERVL -1741 3913 3723 339 307 119 3 chr5 663653 663873 -202421659 - ERVL LTR ERVL -2132 3561 3267 1283 328 34 26 chr5 663913 663965 -202421567 - ERVL LTR ERVL -2532 3232 3182 784 235 10 56 chr5 663965 664161 -202421371 + MER5A DNA MER1_type 1 187 -2 1283 328 34 26 chr5 664161 664721 -202420811 - ERVL LTR ERVL -2582 3182 2615 1450 170 65 0 chr5 665877 666153 -202419379 - AluJb SINE Alu -18 294 1 716 238 105 28 chr5 666422 666708 -202418824 + MLT1A1 LTR MaLR 43 350 -15 216 280 0 0 chr5 666796 666871 -202418661 + G-rich Low_complexity Low_complexity 1 75 0 213 258 11 22 chr5 667839 667928 -202417604 + G-rich Low_complexity Low_complexity 2 89 0 24 32 0 0 chr5 668119 668150 -202417382 + GC_rich Low_complexity Low_complexity 1 31 0 407 248 0 8 chr5 668931 669060 -202416472 + (TG)n Simple_repeat Simple_repeat 1 128 0 1420 168 18 96 chr5 669413 669746 -202415786 + AluJo SINE Alu 3 309 -3 250 333 19 0 chr5 671122 671227 -202414305 - MIR SINE MIR -77 185 79 244 203 20 27 chr5 672328 672484 -202413048 + (TCTA)n Simple_repeat Simple_repeat 1 154 0 1654 167 20 73 chr5 672497 672893 -202412639 - MLT1B LTR MaLR 0 390 16 215 246 36 0 chr5 672902 673012 -202412520 + (TCTA)n Simple_repeat Simple_repeat 3 116 0 * 850 182 10 0 chr5 672994 673288 -202412244 + (TCCA)n Simple_repeat Simple_repeat 1 297 0 186 358 87 10 chr5 673373 673580 -202411952 - MIR SINE MIR -16 246 24 243 0 0 0 chr5 674072 674099 -202411433 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 301 220 33 0 chr5 675921 676071 -202409461 + CT-rich Low_complexity Low_complexity 1 155 0 2261 93 0 3 chr5 676148 676458 -202409074 - AluSc SINE Alu 0 309 1 205 143 53 127 chr5 679359 679548 -202405984 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 193 81 141 20 chr5 679577 679676 -202405856 + (TGGA)n Simple_repeat Simple_repeat 4 114 0 374 103 103 81 chr5 679787 679961 -202405571 + (TGGA)n Simple_repeat Simple_repeat 2 179 0 213 293 48 12 chr5 681753 681920 -202403612 + (CAGCC)n Simple_repeat Simple_repeat 4 176 0 * 240 337 30 0 chr5 681809 682036 -202403496 + (CCCGG)n Simple_repeat Simple_repeat 1 233 0 225 125 25 0 chr5 684942 684982 -202400550 - L1MEc LINE L1 -3162 3053 3013 3055 234 72 10 chr5 685085 686486 -202399046 - L1MEc LINE L1 -3130 3085 1634 4231 171 64 20 chr5 686497 686901 -202398631 - L1MB3 LINE L1 -8 6175 5790 1773 171 3 13 chr5 686901 687205 -202398327 - AluJb SINE Alu -11 301 1 4231 171 64 20 chr5 687205 687956 -202397576 - L1MB3 LINE L1 -393 5790 4962 407 333 15 5 chr5 687956 688157 -202397375 - L1MEc LINE L1 -5519 877 675 1934 99 4 0 chr5 691870 692133 -202393399 + AluSq SINE Alu 36 299 -14 764 117 22 34 chr5 693942 694121 -202391411 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 267 107 76 23 chr5 694176 694307 -202391225 + (TAGA)n Simple_repeat Simple_repeat 4 141 0 225 254 103 40 chr5 700275 700499 -202385033 - MLT1I LTR MaLR -143 266 29 363 248 33 6 chr5 700543 700857 -202384675 + (TG)n Simple_repeat Simple_repeat 1 322 0 769 185 11 0 chr5 701638 701816 -202383716 + (CA)n Simple_repeat Simple_repeat 1 180 0 237 297 89 10 chr5 704087 704188 -202381344 + MIR SINE MIR 41 149 -59 1596 107 9 124 chr5 704271 704609 -202380923 + AluSp SINE Alu 3 301 -12 1245 258 42 11 chr5 705607 705987 -202379545 + L1MB3 LINE L1 5784 6175 -8 241 296 31 0 chr5 706937 707035 -202378497 + MER58A DNA MER1_type 19 119 0 426 204 0 0 chr5 709064 709172 -202376360 + (GGATG)n Simple_repeat Simple_repeat 3 110 0 204 40 0 0 chr5 709693 709718 -202375814 + (TG)n Simple_repeat Simple_repeat 2 26 0 228 170 0 0 chr5 709791 709844 -202375688 + (TG)n Simple_repeat Simple_repeat 2 54 0 272 310 155 0 chr5 712133 712262 -202373270 - MIR SINE MIR -49 213 65 1292 312 91 22 chr5 712923 714095 -202371437 - L1MEc LINE L1 -2919 3507 2296 2184 118 0 0 chr5 714095 714399 -202371133 - AluSx SINE Alu -6 306 3 1292 312 91 22 chr5 714399 714456 -202371076 - L1MEc LINE L1 -4130 2296 2244 381 343 61 25 chr5 714670 714868 -202370664 - L1MEc LINE L1 -4539 1887 1683 1183 58 41 35 chr5 715010 715211 -202370321 - AluY SINE Alu 0 311 119 1138 296 87 16 chr5 715650 716214 -202369318 - L1MEc LINE L1 -5748 859 256 383 299 134 5 chr5 716455 716649 -202368883 - L1MEd LINE L1 -5304 815 597 253 323 161 29 chr5 720095 720479 -202365053 + L2 LINE L2 2362 2796 -518 476 286 20 6 chr5 721502 721702 -202363830 + L1M3 LINE L1 5254 5458 -722 261 304 130 5 chr5 722060 722244 -202363288 + LTR16A1 LTR ERVL 248 454 -3 1030 218 64 123 chr5 722420 722874 -202362658 + MLT1C LTR MaLR 8 434 -33 248 235 59 69 chr5 723231 723333 -202362199 + L2 LINE L2 3172 3272 0 296 231 10 0 chr5 723333 723437 -202362095 + (TGGA)n Simple_repeat Simple_repeat 2 106 0 344 246 8 0 chr5 723473 723595 -202361937 + (TGGA)n Simple_repeat Simple_repeat 2 124 0 226 271 0 0 chr5 723598 723646 -202361886 + polypurine Low_complexity Low_complexity 4 51 0 215 263 0 0 chr5 723619 723676 -202361856 + (TGGG)n Simple_repeat Simple_repeat 3 59 0 * 572 198 12 17 chr5 723684 723856 -202361676 + (TGGA)n Simple_repeat Simple_repeat 1 171 0 189 0 0 0 chr5 723895 723916 -202361616 + (TGGA)n Simple_repeat Simple_repeat 4 24 0 902 164 0 11 chr5 723928 724203 -202361329 + (TGGA)n Simple_repeat Simple_repeat 1 272 0 247 224 17 0 chr5 725477 725535 -202359997 + MER81 DNA DNA 2 60 -54 389 285 137 23 chr5 727764 727955 -202357577 + MIR SINE MIR 11 215 -47 371 291 125 35 chr5 728704 729048 -202356484 + MLT1E LTR MaLR 105 479 -114 1166 134 32 0 chr5 729323 729509 -202356023 - AluSg/x SINE Alu -1 309 118 1828 88 149 0 chr5 729513 729774 -202355758 - AluSx SINE Alu -2 300 1 415 300 9 3 chr5 730553 730888 -202354644 + (TG)n Simple_repeat Simple_repeat 1 337 0 446 316 0 7 chr5 730922 731074 -202354458 + (TG)n Simple_repeat Simple_repeat 1 151 0 1393 226 29 9 chr5 731415 731765 -202353767 - MLT1A1 LTR MaLR -6 359 3 632 202 97 45 chr5 731793 732040 -202353492 + pTR5 LTR ERV1 738 997 -1441 3732 158 67 42 chr5 732134 732805 -202352727 + LTR12 LTR ERV1 1 688 0 674 231 89 41 chr5 733647 733966 -202351566 + L1MC4a LINE L1 6113 6476 -1332 626 193 114 0 chr5 733967 734107 -202351425 - MER45A DNA AcHobo -1 177 22 1317 265 98 55 chr5 734292 734620 -202350912 + L1MC4a LINE L1 6623 6935 -873 1712 178 7 7 chr5 734620 734913 -202350619 + AluJb SINE Alu 1 293 -19 1317 265 98 55 chr5 734913 735350 -202350182 + L1MC4a LINE L1 6935 7421 -387 626 259 40 71 chr5 735384 735681 -202349851 + L1MC4a LINE L1 7518 7805 -3 1772 109 66 0 chr5 735782 736039 -202349493 + AluSx SINE Alu 1 274 -38 669 265 55 0 chr5 736158 736377 -202349155 + MLT1C LTR MaLR 53 283 -184 1093 213 144 56 chr5 736772 737172 -202348360 - MER66A LTR ERV1 0 478 97 1425 192 91 0 chr5 737274 737582 -202347950 - MER66A-int LTR ERV1 -2 6674 6339 525 156 7 4 chr5 737633 737775 -202347757 + MER66B LTR ERV1 290 486 0 281 231 15 0 chr5 737858 737923 -202347609 - MER66A-int LTR ERV1 -287 6389 6324 610 189 0 24 chr5 737998 738125 -202347407 - MER66A-int LTR ERV1 -1852 4824 4701 1709 135 0 105 chr5 738163 738496 -202347036 - AluJb SINE Alu -4 298 1 945 258 70 36 chr5 738499 738637 -202346895 - MER66A-int LTR ERV1 -2509 4167 4035 2227 100 0 3 chr5 738637 738937 -202346595 + AluSg SINE Alu 1 299 -11 945 258 70 36 chr5 738937 739128 -202346404 - MER66A-int LTR ERV1 -2641 4035 3827 1336 74 0 0 chr5 739128 739291 -202346241 + AluSq SINE Alu 1 163 -150 4315 235 53 20 chr5 739318 740066 -202345466 - MER66A-int LTR ERV1 -2863 3813 3091 1569 110 9 9 chr5 740066 740294 -202345238 + AluSc SINE Alu 65 292 -17 4315 235 53 20 chr5 740294 740877 -202344655 - MER66A-int LTR ERV1 -3585 3091 2336 2056 199 59 5 chr5 740866 741539 -202343993 - MER66A-int LTR ERV1 -4508 2168 1424 * 4541 224 81 32 chr5 741986 743279 -202342253 - MER66A-int LTR ERV1 -5268 1408 53 1306 174 92 90 chr5 743399 743778 -202341754 - MER66A LTR ERV1 0 478 99 385 348 139 16 chr5 743926 744472 -202341060 - L1MC4a LINE L1 -1927 5881 5269 2326 90 3 3 chr5 744622 744934 -202340598 - AluSp SINE Alu -1 312 1 5037 209 33 12 chr5 744945 746446 -202339086 - L1MC1 LINE L1 -1 6332 4802 245 270 45 11 chr5 746446 746535 -202338997 + (CCCA)n Simple_repeat Simple_repeat 4 95 0 514 309 40 0 chr5 746553 746728 -202338804 - L1MC1 LINE L1 -1372 4774 4593 339 85 0 0 chr5 746731 746778 -202338754 + (CA)n Simple_repeat Simple_repeat 2 48 0 1813 118 0 0 chr5 746792 747046 -202338486 - AluSx SINE Alu -58 254 1 2190 112 10 0 chr5 747249 747553 -202337979 - AluSg SINE Alu -3 307 1 862 129 8 8 chr5 747553 747685 -202337847 - AluSg SINE Alu -178 132 1 233 301 39 19 chr5 748536 748639 -202336893 - MER20B DNA MER1_type 0 783 679 239 326 28 21 chr5 748798 748939 -202336593 - MER20B DNA MER1_type -385 398 257 2157 101 0 7 chr5 749299 749597 -202335935 - AluSx SINE Alu -16 296 1 1475 272 52 82 chr5 749894 750659 -202334873 - MER21B LTR ERV1 -107 756 15 1969 120 0 4 chr5 750662 750938 -202334594 - AluSx SINE Alu -24 288 14 213 189 33 67 chr5 751006 751096 -202334436 + (CCCCAG)n Simple_repeat Simple_repeat 2 88 0 659 179 132 24 chr5 751798 751881 -202333651 - MER45B DNA AcHobo -562 1019 946 2076 113 14 0 chr5 751881 752173 -202333359 - AluSx SINE Alu -16 296 1 659 179 132 24 chr5 752173 752301 -202333231 - MER45B DNA AcHobo -635 946 785 345 299 46 37 chr5 752744 752961 -202332571 - MER45B DNA AcHobo -247 793 575 380 258 20 0 chr5 753140 753251 -202332281 - MER45 DNA AcHobo -787 166 67 258 322 66 8 chr5 753971 754092 -202331440 + MIR SINE MIR 106 233 -29 1362 184 46 20 chr5 755098 755446 -202330086 + MLT1B LTR MaLR 1 357 -33 3069 164 72 2 chr5 755447 755964 -202329568 + MER41C LTR ERV1 2 554 0 2224 106 0 6 chr5 756587 756898 -202328634 - AluSq SINE Alu -4 309 1 686 331 48 3 chr5 756912 757226 -202328306 + L1ME1 LINE L1 5402 5729 -2079 731 258 116 68 chr5 757268 758336 -202327196 + L1MEc LINE L1 1008 2023 -4192 1905 150 0 26 chr5 758336 758643 -202326889 + AluJb SINE Alu 1 299 -13 2060 116 3 3 chr5 758645 758937 -202326595 + AluSq SINE Alu 1 292 -21 731 258 116 68 chr5 758937 759196 -202326336 + L1MEc LINE L1 2023 2561 -3654 3189 209 129 3 chr5 759277 760137 -202325395 + L1 LINE L1 1 968 -5821 3174 150 8 0 chr5 760135 760743 -202324789 + L1 LINE L1 4950 5562 -1226 * 1671 140 52 4 chr5 760743 761014 -202324518 + AluJo SINE Alu 9 292 -20 484 272 51 24 chr5 761018 761319 -202324213 + L1ME1 LINE L1 5685 6037 -129 1892 145 10 3 chr5 761319 761615 -202323917 - AluJb SINE Alu -14 298 1 484 272 51 24 chr5 761615 761749 -202323783 + L1ME1 LINE L1 6037 6166 0 2528 157 52 7 chr5 761923 762349 -202323183 - MER65A LTR ERV1 0 445 1 3676 140 28 25 chr5 762498 762693 -202322839 + MER50 LTR ERV1 24 217 -517 1660 54 45 18 chr5 762693 762915 -202322617 + L1PA6 LINE L1 5922 6149 -5 3676 140 28 25 chr5 762915 763405 -202322127 + MER50 LTR ERV1 217 711 -23 2388 58 0 0 chr5 764214 764505 -202321027 + AluY SINE Alu 2 292 -19 22 56 0 0 chr5 767394 767430 -202318102 + GC_rich Low_complexity Low_complexity 1 36 0 43 64 0 0 chr5 767561 767639 -202317893 + GC_rich Low_complexity Low_complexity 1 78 0 24 0 0 0 chr5 767809 767833 -202317699 + GC_rich Low_complexity Low_complexity 1 24 0 2182 95 3 0 chr5 769276 769570 -202315962 - AluSg SINE Alu -15 295 1 1761 149 14 10 chr5 769592 769881 -202315651 + AluJb SINE Alu 1 290 -22 279 0 0 0 chr5 770443 770474 -202315058 + (CA)n Simple_repeat Simple_repeat 1 31 0 1980 103 59 10 chr5 771417 771707 -202313825 + AluSx SINE Alu 1 304 -8 2012 126 0 7 chr5 777686 778013 -202307519 - AluSx SINE Alu 0 312 1 844 231 163 10 chr5 779765 780059 -202305473 - MER44D DNA MER2_type 0 609 1 686 173 23 30 chr5 780285 780418 -202305114 - FLAM_C SINE Alu -1 132 1 233 204 20 0 chr5 790506 790555 -202294977 - Tigger3(Golem) DNA MER2_type -2979 50 1 198 240 40 0 chr5 793050 793100 -202292432 + MER5A DNA MER1_type 47 98 -91 559 211 48 53 chr5 997199 997407 -202088125 + Charlie5 DNA MER1_type 2333 2539 -73 212 241 0 60 chr5 999964 1000047 -202085485 + C-rich Low_complexity Low_complexity 6 83 0 306 255 0 21 chr5 1000288 1000382 -202085150 + C-rich Low_complexity Low_complexity 2 93 0 455 94 118 47 chr5 1001084 1001169 -202084363 + AluJo SINE Alu 85 175 -137 2041 107 4 0 chr5 1002836 1003106 -202082426 + AluSx SINE Alu 1 271 -41 344 203 0 16 chr5 1003217 1003281 -202082251 + L2 LINE L2 3251 3313 0 395 247 62 0 chr5 1003299 1003396 -202082136 + Zaphod DNA AcHobo 500 602 -3429 201 264 190 33 chr5 1004454 1004575 -202080957 + L2 LINE L2 3128 3267 -46 635 163 0 36 chr5 1005262 1005428 -202080104 + (CCCTAA)n Simple_repeat Simple_repeat 6 165 0 388 143 0 33 chr5 1005439 1005530 -202080002 + (CCCTAA)n Simple_repeat Simple_repeat 6 93 0 207 0 0 0 chr5 1005718 1005741 -202079791 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2817 116 7 9 chr5 1005741 1006172 -202079360 - L1PB1 LINE L1 -11 6140 5711 1701 152 0 0 chr5 1007187 1007437 -202078095 - AluSx SINE Alu -62 250 1 2195 120 3 3 chr5 1007806 1008107 -202077425 - AluSg SINE Alu -9 301 1 32 26 0 0 chr5 1008116 1008155 -202077377 + AT_rich Low_complexity Low_complexity 1 39 0 2321 104 0 0 chr5 1009952 1010259 -202075273 - AluSg SINE Alu -3 307 1 222 235 59 0 chr5 1012715 1012783 -202072749 + MIR3 SINE MIR 116 187 -21 213 246 31 0 chr5 1013266 1013331 -202072201 + (TG)n Simple_repeat Simple_repeat 1 67 0 216 277 0 15 chr5 1013457 1013522 -202072010 + T-rich Low_complexity Low_complexity 2 65 0 269 262 8 41 chr5 1013922 1014044 -202071488 + (CGGGG)n Simple_repeat Simple_repeat 1 118 0 269 294 198 6 chr5 1016091 1016268 -202069264 - MLT1J2 LTR MaLR -51 399 189 420 337 118 3 chr5 1017761 1018117 -202067415 + HAL1 LINE L1 255 651 -1856 1308 213 97 19 chr5 1018224 1018716 -202066816 + MER74A LTR ERVL 1 558 0 303 221 18 71 chr5 1018863 1018976 -202066556 - L1MC5 LINE L1 -402 7559 7453 1411 195 94 6 chr5 1019009 1019514 -202066018 + L1MB7 LINE L1 5459 6164 -20 918 287 120 11 chr5 1019519 1019968 -202065564 + HAL1 LINE L1 1291 1788 -719 187 250 16 47 chr5 1020089 1020153 -202065379 - L3 LINE CR1 -772 805 744 5371 135 6 26 chr5 1021487 1021987 -202063545 + L1PA14 LINE L1 4877 5385 -776 2289 123 0 0 chr5 1021987 1022295 -202063237 + AluY SINE Alu 1 308 -3 5371 135 6 26 chr5 1022295 1022515 -202063017 + L1PA14 LINE L1 5385 5608 -553 8600 52 20 1 chr5 1022515 1023564 -202061968 - MER11C LTR ERVK -2 1069 1 5371 135 6 26 chr5 1023564 1024123 -202061409 + L1PA14 LINE L1 5608 6133 -28 867 204 23 27 chr5 1024225 1024445 -202061087 + L1MC3 LINE L1 7077 7295 -490 1267 163 91 77 chr5 1024454 1024829 -202060703 + L1MC3 LINE L1 7403 7782 -3 606 131 0 10 chr5 1025701 1025800 -202059732 + MER4A LTR ERV1 1 98 -566 1673 147 9 13 chr5 1025800 1026147 -202059385 + MER4A LTR ERV1 261 664 0 35 41 0 0 chr5 1026649 1026698 -202058834 + AT_rich Low_complexity Low_complexity 1 49 0 194 220 85 0 chr5 1028838 1028897 -202056635 - L2 LINE L2 -71 3201 3138 9474 42 0 2 chr5 1029473 1031420 -202054112 + L1PA5 LINE L1 4207 6154 0 229 269 65 21 chr5 1032274 1032367 -202053165 - HAL1 LINE L1 -1605 902 806 609 124 0 0 chr5 1035077 1035174 -202050358 + (TG)n Simple_repeat Simple_repeat 2 98 0 26 30 0 0 chr5 1035961 1035994 -202049538 + AT_rich Low_complexity Low_complexity 1 33 0 185 270 27 40 chr5 1036085 1036159 -202049373 - MIR3 SINE MIR -52 156 84 673 250 41 37 chr5 1036868 1037112 -202048420 - L1MC2 LINE L1 -181 6163 5919 1831 184 90 3 chr5 1037164 1037870 -202047662 - L1MC/D LINE L1 -750 5396 4791 216 321 114 15 chr5 1038975 1039106 -202046426 - MIR SINE MIR -83 179 36 2347 87 3 3 chr5 1039722 1040022 -202045510 - AluSp SINE Alu -13 300 1 6905 61 13 14 chr5 1040504 1041797 -202043735 - L1PA7 LINE L1 -2 6152 4854 267 265 10 0 chr5 1041909 1042007 -202043525 + L1ME1 LINE L1 6060 6158 -8 328 297 42 36 chr5 1042480 1042645 -202042887 - MLT1K LTR MaLR -24 564 399 3673 170 40 77 chr5 1043342 1044000 -202041532 - L1MA7 LINE L1 -5 6286 5610 327 109 0 47 chr5 1044000 1044064 -202041468 - Alu SINE Alu -2 300 240 3673 170 40 77 chr5 1044064 1044325 -202041207 - L1MA7 LINE L1 -681 5610 5341 1940 227 13 13 chr5 1044324 1044774 -202040758 + L1 LINE L1 3805 4254 -1892 * 2692 86 0 3 chr5 1044774 1045136 -202040396 - THE1C LTR MaLR 0 375 15 10538 101 70 3 chr5 1045136 1046617 -202038915 - THE1C-int LTR MaLR 0 1580 1 1681 63 5 5 chr5 1046617 1046840 -202038692 - THE1C LTR MaLR 0 375 153 348 132 0 0 chr5 1046842 1046895 -202038637 + Alu SINE Alu 1 53 -248 1042 79 0 0 chr5 1046897 1047048 -202038484 + AluSg/x SINE Alu 159 309 0 1093 102 25 0 chr5 1047048 1047205 -202038327 - THE1C LTR MaLR -214 161 1 3345 176 40 22 chr5 1047206 1047975 -202037557 + L1 LINE L1 4251 5033 -1113 611 76 0 0 chr5 1047975 1048054 -202037478 + MER30B DNA MER1_type 2 80 -110 877 132 0 0 chr5 1048054 1048168 -202037364 + AluSg SINE Alu 1 114 -196 39072 69 10 8 chr5 1048176 1054309 -202031223 + L1PA6 LINE L1 8 6147 -7 1437 104 5 0 chr5 1054309 1054501 -202031031 + AluSg SINE Alu 103 295 -15 396 0 0 0 chr5 1054502 1054546 -202030986 + (CA)n Simple_repeat Simple_repeat 2 45 0 824 119 60 8 chr5 1054548 1054682 -202030850 + MER30B DNA MER1_type 90 230 0 1048 210 27 57 chr5 1054682 1055015 -202030517 + L1 LINE L1 5027 5349 -797 214 222 14 14 chr5 1055156 1055228 -202030304 + (TA)n Simple_repeat Simple_repeat 2 73 0 690 205 0 0 chr5 1056272 1056399 -202029133 - MSTC LTR MaLR -80 348 222 310 394 8 0 chr5 1057298 1057425 -202028107 - L2 LINE L2 -1 3271 3144 391 306 51 2 chr5 1057823 1058024 -202027508 - L1M4b LINE L1 -6395 460 11 1661 178 3 18 chr5 1059749 1060035 -202025497 - AluJo SINE Alu -30 282 1 805 218 35 44 chr5 1060055 1060284 -202025248 - AluJo SINE Alu -1 311 85 579 233 62 11 chr5 1060284 1060460 -202025072 - AluJb SINE Alu -62 250 66 4619 151 14 1 chr5 1060818 1061587 -202023945 + Tigger1 DNA MER2_type 75 853 -1565 1089 142 21 16 chr5 1065495 1065685 -202019847 + L1PB4 LINE L1 5958 6148 -8 6789 134 36 8 chr5 1070391 1071588 -202013944 + Tigger1 DNA MER2_type 971 2201 -217 3835 171 28 52 chr5 1071895 1072812 -202012720 - L1MC1 LINE L1 0 6333 5439 1793 129 0 80 chr5 1073466 1073624 -202011908 + AluSx SINE Alu 1 121 -191 2583 82 0 9 chr5 1073624 1073940 -202011592 + AluSp SINE Alu 1 313 0 1793 129 0 80 chr5 1073940 1074107 -202011425 + AluSx SINE Alu 121 300 -12 341 187 40 0 chr5 1074141 1074216 -202011316 + AluJ/FLAM SINE Alu 11 88 -214 2037 119 3 52 chr5 1074398 1074726 -202010806 - AluSx SINE Alu 0 312 1 1018 106 0 28 chr5 1074731 1074873 -202010659 - FRAM SINE Alu -15 161 24 1286 119 0 11 chr5 1075025 1075210 -202010322 - AluSg/x SINE Alu -9 301 119 1032 117 37 19 chr5 1075212 1075374 -202010158 - AluSg/x SINE Alu -23 289 125 306 287 57 38 chr5 1075397 1075554 -202009978 + L1MCa LINE L1 1906 2065 -4361 206 162 0 147 chr5 1078522 1078590 -202006942 + MIR SINE MIR 161 218 -44 663 248 221 34 chr5 1078674 1079171 -202006361 - MLT1G LTR MaLR 0 590 1 1996 120 39 0 chr5 1079335 1079618 -202005914 + AluSx SINE Alu 1 294 -18 581 235 6 0 chr5 1079879 1080058 -202005474 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 267 152 0 0 chr5 1080081 1080127 -202005405 + (TCCA)n Simple_repeat Simple_repeat 4 49 0 2332 98 0 3 chr5 1080130 1080427 -202005105 - AluSx SINE Alu -16 296 1 2056 96 0 14 chr5 1080481 1080761 -202004771 - AluSx SINE Alu -11 301 26 1278 175 62 15 chr5 1082789 1083094 -202002438 - AluSx SINE Alu 0 329 12 575 125 0 153 chr5 1086944 1087088 -201998444 - AluJb SINE Alu -189 123 2 1833 122 15 4 chr5 1087508 1087779 -201997753 - AluSx SINE Alu 0 312 39 1712 170 30 36 chr5 1089798 1090243 -201995289 + L1M4 LINE L1 5333 5775 -403 244 232 110 0 chr5 1090286 1090368 -201995164 - MIR SINE MIR -1 261 171 285 231 51 13 chr5 1090580 1090658 -201994874 - MLT1E3 LTR MaLR -293 237 157 597 101 4 22 chr5 1092520 1092611 -201992921 + AluSg/x SINE Alu 197 285 -25 199 0 0 0 chr5 1092611 1092633 -201992899 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1978 148 0 10 chr5 1092642 1092952 -201992580 + AluSx SINE Alu 4 310 -2 271 250 16 0 chr5 1093129 1093193 -201992339 - Alu SINE Alu -22 279 215 23 0 0 0 chr5 1093937 1093960 -201991572 + GC_rich Low_complexity Low_complexity 1 23 0 366 23 0 0 chr5 1094482 1094525 -201991007 + (GAA)n Simple_repeat Simple_repeat 2 44 0 214 192 0 19 chr5 1098924 1098976 -201986556 + A-rich Low_complexity Low_complexity 3 53 0 255 310 18 9 chr5 1099273 1099386 -201986146 + GA-rich Low_complexity Low_complexity 3 116 0 508 190 100 0 chr5 1099556 1099656 -201985876 - MLT1E3 LTR MaLR -472 152 43 1312 203 132 33 chr5 1099656 1100095 -201985437 - MER66A LTR ERV1 0 478 97 1427 151 63 4 chr5 1100174 1100445 -201985087 - MER66A-int LTR ERV1 0 6676 6390 * 1727 128 48 93 chr5 1100439 1100836 -201984696 - MER66-int LTR ERV1 -1740 4936 4558 507 226 0 19 chr5 1100837 1100943 -201984589 - MER4D LTR ERV1 -712 160 57 547 99 165 8 chr5 1100955 1101076 -201984456 - MER66-int LTR ERV1 -2230 4446 4307 295 175 16 63 chr5 1103943 1104132 -201981400 + G-rich Low_complexity Low_complexity 1 180 0 185 50 0 100 chr5 1104369 1104409 -201981123 + (CCCCCA)n Simple_repeat Simple_repeat 3 38 0 250 69 0 128 chr5 1104456 1104558 -201980974 + (CCCCCA)n Simple_repeat Simple_repeat 4 92 0 368 274 152 19 chr5 1104660 1104970 -201980562 - MLT1C LTR MaLR -72 395 45 189 0 0 0 chr5 1105052 1105073 -201980459 + (T)n Simple_repeat Simple_repeat 1 21 0 266 238 33 26 chr5 1105706 1105857 -201979675 + (CA)n Simple_repeat Simple_repeat 1 152 0 319 257 47 0 chr5 1105892 1106063 -201979469 + (CA)n Simple_repeat Simple_repeat 1 179 0 885 101 0 25 chr5 1107290 1107409 -201978123 - AluJb SINE Alu -19 293 178 701 83 19 0 chr5 1107428 1107536 -201977996 - HY1 scRNA scRNA -1 111 2 1436 159 13 4 chr5 1108766 1108998 -201976534 - AluJo SINE Alu -78 234 1 281 398 0 0 chr5 1109360 1109531 -201976001 + C-rich Low_complexity Low_complexity 3 173 0 * 357 255 11 69 chr5 1109432 1109620 -201975912 + CT-rich Low_complexity Low_complexity 2 178 0 306 346 0 13 chr5 1109546 1109705 -201975827 + C-rich Low_complexity Low_complexity 2 158 0 * 271 310 3 57 chr5 1109895 1110150 -201975382 + C-rich Low_complexity Low_complexity 1 241 0 7206 197 31 18 chr5 1111026 1112608 -201972924 + L1MB3 LINE L1 3581 5214 -969 1917 176 7 0 chr5 1112608 1112903 -201972629 + AluJo SINE Alu 4 300 -12 7206 197 31 18 chr5 1112903 1113847 -201971685 + L1MB3 LINE L1 5214 6144 -39 2925 207 165 0 chr5 1113861 1114669 -201970863 + L1ME1 LINE L1 5222 6161 -5 1753 269 115 28 chr5 1115193 1115543 -201969989 - L1ME LINE L1 -4594 1486 1168 1680 215 0 0 chr5 1115543 1115855 -201969677 - AluJo SINE Alu 0 312 1 1753 269 115 28 chr5 1115855 1116061 -201969471 - L1ME LINE L1 -4912 1168 981 1759 130 90 31 chr5 1116061 1116415 -201969117 + THE1C LTR MaLR 1 375 0 1753 269 115 28 chr5 1116415 1116981 -201968551 - L1ME LINE L1 -5099 981 282 1704 187 3 16 chr5 1117018 1117334 -201968198 - AluJb SINE Alu 0 312 1 2268 110 0 7 chr5 1117348 1117648 -201967884 - AluSc SINE Alu -11 298 1 234 250 31 0 chr5 1117840 1117904 -201967628 - L1ME LINE L1 -5957 113 48 183 100 0 0 chr5 1117966 1117996 -201967536 + (T)n Simple_repeat Simple_repeat 1 30 0 237 239 30 0 chr5 1120599 1120666 -201964866 - LTR23 LTR ERV1 -16 421 353 416 191 76 168 chr5 1120721 1121078 -201964454 - LTR56 LTR ERV1 -121 324 1 200 204 34 34 chr5 1121491 1121579 -201963953 + CT-rich Low_complexity Low_complexity 1 88 0 1423 146 56 0 chr5 1121714 1121982 -201963550 + AluJb SINE Alu 30 312 0 2299 89 3 7 chr5 1121985 1122289 -201963243 + AluSp SINE Alu 1 303 -10 607 322 25 32 chr5 1122760 1123074 -201962458 - L3 LINE CR1 -863 714 403 2838 119 106 12 chr5 1123159 1123722 -201961810 + MER4B LTR ERV1 1 779 0 604 170 0 0 chr5 1123925 1124019 -201961513 + AluJ/FLAM SINE Alu 2 95 -217 342 265 189 0 chr5 1124296 1124428 -201961104 - MIR SINE MIR -56 206 50 2303 73 59 0 chr5 1124532 1124820 -201960712 + AluY SINE Alu 1 305 -6 245 159 23 0 chr5 1125460 1125504 -201960028 + L2 LINE L2 3269 3313 0 341 261 34 0 chr5 1125955 1126043 -201959489 + MER3 DNA MER1_type 1 91 -118 274 171 114 0 chr5 1126887 1126957 -201958575 + MER5A DNA MER1_type 47 124 -65 204 175 88 114 chr5 1127023 1127137 -201958395 + MER5A DNA MER1_type 77 187 -2 1637 91 14 5 chr5 1127164 1127374 -201958158 - AluSq SINE Alu -17 296 85 402 284 56 10 chr5 1127378 1127575 -201957957 - L1MC5 LINE L1 -796 7165 6960 230 208 21 0 chr5 1127626 1127674 -201957858 - L1MC3 LINE L1 -1049 6736 6688 2317 98 7 0 chr5 1127777 1128072 -201957460 - AluSq SINE Alu -16 297 1 822 245 94 87 chr5 1128932 1129368 -201956164 - L1MC3 LINE L1 -1958 5850 5412 467 267 76 9 chr5 1129399 1129629 -201955903 - L1MD2 LINE L1 -108 6058 5802 1991 159 0 0 chr5 1129766 1130062 -201955470 + AluJb SINE Alu 9 304 -8 600 88 0 0 chr5 1130128 1130208 -201955324 - MADE1 DNA Mariner 0 80 1 1590 120 9 19 chr5 1130332 1130593 -201954939 - MER1B DNA MER1_type -2 337 119 229 65 0 0 chr5 1130613 1130644 -201954888 - MER1B DNA MER1_type -174 123 133 248 108 0 0 chr5 1130671 1130708 -201954824 - MER1B DNA MER1_type -168 129 133 226 135 0 0 chr5 1130799 1130836 -201954696 - MER1B DNA MER1_type -168 129 133 * 248 108 0 0 chr5 1130831 1130868 -201954664 - MER1B DNA MER1_type -168 129 133 248 108 0 0 chr5 1131151 1131188 -201954344 - MER1B DNA MER1_type -168 129 133 226 135 0 0 chr5 1131183 1131220 -201954312 - MER1B DNA MER1_type -168 129 133 * 231 132 0 0 chr5 1131440 1131478 -201954054 - MER1B DNA MER1_type -168 129 132 254 105 0 0 chr5 1131536 1131574 -201953958 - MER1B DNA MER1_type -168 129 132 248 108 0 0 chr5 1131600 1131637 -201953895 - MER1B DNA MER1_type -168 129 133 * 249 108 0 0 chr5 1131632 1131669 -201953863 - MER1B DNA MER1_type -168 129 133 248 108 0 0 chr5 1131792 1131829 -201953703 - MER1B DNA MER1_type -168 129 133 225 135 0 0 chr5 1131824 1131861 -201953671 - MER1B DNA MER1_type -168 129 133 * 239 130 6 0 chr5 1131856 1131906 -201953626 - MER1B DNA MER1_type -168 129 119 226 135 0 0 chr5 1132018 1132055 -201953477 - MER1B DNA MER1_type -168 129 133 225 135 0 0 chr5 1132114 1132151 -201953381 - MER1B DNA MER1_type -168 129 133 227 83 28 0 chr5 1132242 1132278 -201953254 - MER1B DNA MER1_type -168 129 133 * 248 108 0 0 chr5 1132273 1132310 -201953222 - MER1B DNA MER1_type -168 129 133 248 108 0 0 chr5 1132305 1132342 -201953190 - MER1B DNA MER1_type -168 129 133 248 108 0 0 chr5 1132337 1132374 -201953158 - MER1B DNA MER1_type -168 129 133 248 108 0 0 chr5 1132369 1132406 -201953126 - MER1B DNA MER1_type -168 129 133 226 135 0 0 chr5 1132465 1132502 -201953030 - MER1B DNA MER1_type -168 129 133 226 135 0 0 chr5 1132497 1132534 -201952998 - MER1B DNA MER1_type -168 129 133 * 239 130 6 0 chr5 1132529 1132579 -201952953 - MER1B DNA MER1_type -168 129 119 228 91 0 0 chr5 1132598 1132631 -201952901 - MER1B DNA MER1_type -173 124 132 231 132 0 0 chr5 1132657 1132695 -201952837 - MER1B DNA MER1_type -168 129 132 225 132 0 0 chr5 1132689 1132727 -201952805 - MER1B DNA MER1_type -168 129 132 * 231 132 0 0 chr5 1132785 1132823 -201952709 - MER1B DNA MER1_type -168 129 132 242 62 0 0 chr5 1132950 1132982 -201952550 - MER1B DNA MER1_type -173 124 133 * 248 108 0 0 chr5 1132977 1133014 -201952518 - MER1B DNA MER1_type -168 129 133 229 132 0 0 chr5 1133009 1133047 -201952485 - MER1B DNA MER1_type -168 129 132 * 226 135 0 0 chr5 1133073 1133110 -201952422 - MER1B DNA MER1_type -168 129 133 * 242 108 0 0 chr5 1133105 1133142 -201952390 - MER1B DNA MER1_type -168 129 133 * 248 108 0 0 chr5 1133137 1133174 -201952358 - MER1B DNA MER1_type -168 129 133 228 91 0 0 chr5 1133206 1133239 -201952293 - MER1B DNA MER1_type -173 124 132 239 130 6 0 chr5 1133265 1133315 -201952217 - MER1B DNA MER1_type -168 129 119 228 91 0 0 chr5 1133302 1133335 -201952197 - MER1B DNA MER1_type -173 124 132 * 248 108 0 0 chr5 1133361 1133398 -201952134 - MER1B DNA MER1_type -168 129 133 226 135 0 0 chr5 1133453 1133490 -201952042 - MER1B DNA MER1_type -168 129 133 281 81 0 0 chr5 1133547 1133584 -201951948 - MER1B DNA MER1_type -168 129 133 228 118 0 0 chr5 1134485 1134519 -201951013 - MER1B DNA MER1_type -171 126 133 225 135 0 0 chr5 1134514 1134551 -201950981 - MER1B DNA MER1_type -168 129 133 * 737 178 89 13 chr5 1134607 1134764 -201950768 - MER1B DNA MER1_type -168 129 1 1505 144 137 39 chr5 1134886 1135170 -201950362 + AluJo SINE Alu 1 312 0 1140 171 83 0 chr5 1135886 1136103 -201949429 + MER46A DNA MER2_type 2 236 0 1435 178 103 11 chr5 1136251 1136532 -201949000 + AluJb SINE Alu 1 307 -5 276 233 14 40 chr5 1137761 1138055 -201947477 + CT-rich Low_complexity Low_complexity 1 286 0 230 294 12 12 chr5 1139927 1140012 -201945520 - L1ME LINE L1 -199 5922 5838 4649 193 32 67 chr5 1141438 1143130 -201942402 - L1MB3 LINE L1 -17 6100 4351 429 20 0 0 chr5 1143130 1143180 -201942352 + (TA)n Simple_repeat Simple_repeat 2 51 0 2125 101 3 3 chr5 1143180 1143478 -201942054 - AluY SINE Alu -13 298 1 4649 193 32 67 chr5 1143478 1143653 -201941879 - L1MB3 LINE L1 -1765 4352 4306 2374 76 0 0 chr5 1143653 1143956 -201941576 - AluY SINE Alu -8 303 1 4649 193 32 67 chr5 1143956 1144070 -201941462 - L1MB3 LINE L1 -1811 4306 4190 2095 137 0 0 chr5 1144072 1144378 -201941154 - AluSx SINE Alu -4 308 3 5831 75 19 82 chr5 1144386 1144741 -201940791 - L1PB1 LINE L1 0 6151 5775 505 42 32 21 chr5 1144741 1144836 -201940696 + (TA)n Simple_repeat Simple_repeat 2 97 0 5831 75 19 82 chr5 1144836 1144921 -201940611 - L1PB1 LINE L1 -376 5775 5686 240 35 0 0 chr5 1144921 1144950 -201940582 + (TG)n Simple_repeat Simple_repeat 2 30 0 5831 75 19 82 chr5 1144950 1145467 -201940065 - L1PB1 LINE L1 -465 5686 5254 4911 222 7 3 chr5 1145462 1146581 -201938951 + L1PB1 LINE L1 4144 5267 -879 * 1796 181 21 21 chr5 1146567 1146942 -201938590 - L1MB3 LINE L1 -1879 4201 3827 * 6396 58 5 11 chr5 1146942 1147749 -201937783 + L1PA6 LINE L1 5350 6154 0 325 253 65 84 chr5 1148453 1148607 -201936925 - L1ME LINE L1 -2384 5424 5274 198 71 0 0 chr5 1148774 1148802 -201936730 + (TC)n Simple_repeat Simple_repeat 2 29 0 4954 158 56 8 chr5 1149202 1150064 -201935468 - MER4D LTR ERV1 0 903 1 11028 180 84 37 chr5 1150086 1150397 -201935135 + L1M4c LINE L1 14 309 -6073 4742 123 47 5 chr5 1150397 1151145 -201934387 + MER4E LTR ERV1 1 779 0 11028 180 84 37 chr5 1151145 1151483 -201934049 + L1M4c LINE L1 309 630 -5752 360 0 0 0 chr5 1151483 1151523 -201934009 + (TAA)n Simple_repeat Simple_repeat 3 42 0 11028 180 84 37 chr5 1151523 1151546 -201933986 + L1M4c LINE L1 630 650 -5732 3257 147 20 61 chr5 1151546 1152184 -201933348 + LTR9 LTR ERV1 1 612 0 11028 180 84 37 chr5 1152184 1153728 -201931804 + L1M4c LINE L1 650 2120 -4262 2025 99 25 0 chr5 1153728 1154012 -201931520 - AluSx SINE Alu -21 291 1 11028 180 84 37 chr5 1154012 1155511 -201930021 + L1M4c LINE L1 2120 3916 -2466 1617 253 144 43 chr5 1155504 1156141 -201929391 - L1MB3 LINE L1 -3215 2865 2294 * 1938 114 4 4 chr5 1156141 1156459 -201929073 + AluSx SINE Alu 1 318 0 1617 253 144 43 chr5 1156459 1157593 -201927939 - L1MB3 LINE L1 -3786 2294 829 2444 59 0 3 chr5 1157593 1157896 -201927636 - AluY SINE Alu -9 302 1 1617 253 144 43 chr5 1157896 1158052 -201927480 - L1MB3 LINE L1 -5251 829 690 1288 184 10 37 chr5 1158605 1158899 -201926633 - AluJo SINE Alu -26 286 1 889 77 77 8 chr5 1159426 1159556 -201925976 + MER85 DNA T2_type 1 139 0 226 205 222 8 chr5 1159584 1159701 -201925831 - L1 LINE L1 -3316 2830 2689 1983 121 0 29 chr5 1159701 1160008 -201925524 + AluJb SINE Alu 1 298 -14 962 128 27 0 chr5 1160131 1160280 -201925252 + Tigger1 DNA MER2_type 1516 1668 -750 316 160 120 0 chr5 1160280 1160355 -201925177 + L1MEc LINE L1 2008 2091 -4305 276 296 103 25 chr5 1160568 1160811 -201924721 - L1 LINE L1 -3598 2548 2287 2087 112 7 0 chr5 1160995 1161290 -201924242 - AluSx SINE Alu -15 297 1 21 0 0 0 chr5 1161475 1161496 -201924036 + AT_rich Low_complexity Low_complexity 1 21 0 14843 133 36 11 chr5 1162347 1164142 -201921390 + Tigger1 DNA MER2_type 1 1871 -547 1850 108 4 0 chr5 1164142 1164400 -201921132 + AluSx SINE Alu 39 297 -15 14843 133 36 11 chr5 1164400 1164963 -201920569 + Tigger1 DNA MER2_type 1871 2418 0 269 299 46 17 chr5 1168179 1168353 -201917179 + (TG)n Simple_repeat Simple_repeat 2 180 0 342 210 10 115 chr5 1168417 1168617 -201916915 + (TG)n Simple_repeat Simple_repeat 2 180 0 289 228 21 98 chr5 1168771 1168964 -201916568 + (TG)n Simple_repeat Simple_repeat 2 179 0 1665 112 4 27 chr5 1169441 1169701 -201915831 - AluSg SINE Alu -5 305 52 2130 141 52 12 chr5 1174868 1175271 -201910261 + L1MA4 LINE L1 5871 6289 -11 1143 187 82 12 chr5 1176100 1176322 -201909210 - MSTA LTR MaLR 0 428 189 1259 135 0 42 chr5 1176322 1176537 -201908995 + MER75 DNA T2_type 3 208 -306 198 247 161 25 chr5 1176574 1176655 -201908877 - MIR SINE MIR -3 259 168 5138 214 42 40 chr5 1179037 1179967 -201905565 + L1MB5 LINE L1 3731 4658 -1488 387 0 0 0 chr5 1179967 1180010 -201905522 + (TA)n Simple_repeat Simple_repeat 1 43 0 2136 102 0 3 chr5 1180013 1180306 -201905226 - AluSg SINE Alu -18 292 1 5138 214 42 40 chr5 1180306 1180419 -201905113 + L1MB5 LINE L1 4659 4770 -1376 2081 86 20 3 chr5 1180419 1180532 -201905000 + AluSc SINE Alu 11 121 -188 387 0 0 0 chr5 1180532 1180575 -201904957 + (CA)n Simple_repeat Simple_repeat 2 44 0 2081 86 20 3 chr5 1180575 1180753 -201904779 + AluSc SINE Alu 121 307 -2 5138 214 42 40 chr5 1180753 1181115 -201904417 + L1MB5 LINE L1 4770 5144 -1002 2596 218 36 14 chr5 1181151 1181784 -201903748 + L1MB5 LINE L1 5418 6064 -110 832 164 0 0 chr5 1182112 1182252 -201903280 + L1MB5 LINE L1 6023 6162 -12 219 250 26 53 chr5 1182879 1182955 -201902577 - MIR SINE MIR 0 262 189 199 204 19 19 chr5 1184308 1184362 -201901170 - MIR SINE MIR -130 132 79 258 279 154 44 chr5 1185011 1185147 -201900385 + MIR SINE MIR 36 186 -76 347 297 35 0 chr5 1186620 1186765 -201898767 + C-rich Low_complexity Low_complexity 5 154 0 214 297 16 16 chr5 1188624 1188688 -201896844 - L2 LINE L2 -84 3188 3125 267 314 26 33 chr5 1189370 1189523 -201896009 + LTR67 LTR ERVL 384 535 -22 494 272 201 10 chr5 1189549 1189843 -201895689 - L2 LINE L2 -858 2456 2107 6236 217 49 15 chr5 1189860 1191975 -201893557 + L1MB4 LINE L1 3581 5752 -428 891 254 61 7 chr5 1191976 1192256 -201893276 + L1MB4 LINE L1 5886 6180 0 683 269 126 31 chr5 1192359 1192716 -201892816 - L2 LINE L2 -1212 2102 1712 253 258 162 0 chr5 1193395 1193562 -201891970 + L2 LINE L2 2867 3060 -253 1917 79 16 4 chr5 1194124 1194378 -201891154 + L1PA6 LINE L1 5898 6154 0 331 253 65 84 chr5 1195082 1195236 -201890296 - L1M LINE L1 -2384 5424 5274 198 71 0 0 chr5 1195403 1195431 -201890101 + (TC)n Simple_repeat Simple_repeat 2 29 0 5002 158 56 8 chr5 1195831 1196693 -201888839 - MER4D LTR ERV1 0 903 1 10368 186 81 34 chr5 1196715 1197026 -201888506 + L1M4c LINE L1 14 309 -6073 4750 123 47 5 chr5 1197026 1197774 -201887758 + MER4E LTR ERV1 1 779 0 10368 186 81 34 chr5 1197774 1198112 -201887420 + L1M4c LINE L1 309 630 -5752 414 0 0 0 chr5 1198112 1198158 -201887374 + (TAA)n Simple_repeat Simple_repeat 3 48 0 10368 186 81 34 chr5 1198158 1198182 -201887350 + L1M4c LINE L1 630 651 -5731 3311 147 20 61 chr5 1198182 1198820 -201886712 + LTR9 LTR ERV1 1 612 0 10368 186 81 34 chr5 1198820 1200364 -201885168 + L1M4c LINE L1 651 2122 -4260 2166 99 25 0 chr5 1200364 1200648 -201884884 - AluSx SINE Alu -21 291 1 10368 186 81 34 chr5 1200648 1202148 -201883384 + L1M4c LINE L1 2122 3916 -2466 1471 246 131 48 chr5 1202141 1202778 -201882754 - L1ME LINE L1 -864 1577 2088 * 2072 114 4 4 chr5 1202778 1203096 -201882436 + AluSx SINE Alu 1 318 0 1471 246 131 48 chr5 1203096 1203891 -201881641 - L1ME LINE L1 -352 2089 1362 445 296 58 36 chr5 1203903 1204230 -201881302 - L1ME LINE L1 -4981 1089 841 2590 59 0 3 chr5 1204230 1204533 -201880999 - AluY SINE Alu -9 302 1 445 296 58 36 chr5 1204533 1204689 -201880843 - L1ME LINE L1 -5229 841 690 1425 184 10 37 chr5 1205242 1205536 -201879996 - AluJo SINE Alu -26 286 1 428 248 223 34 chr5 1206003 1206063 -201879469 - L1ME LINE L1 -3213 2867 2820 889 77 77 8 chr5 1206063 1206193 -201879339 + MER85 DNA T2_type 1 139 0 428 248 223 34 chr5 1206193 1206338 -201879194 - L1ME LINE L1 -3260 2820 2623 2121 121 0 29 chr5 1206338 1206644 -201878888 + AluJb SINE Alu 1 297 -15 913 128 27 0 chr5 1206767 1206916 -201878616 + Tigger1 DNA MER2_type 1516 1668 -750 299 160 120 0 chr5 1206916 1206991 -201878541 + L1MEc LINE L1 2008 2091 -4305 235 300 103 25 chr5 1207204 1207447 -201878085 - L1ME LINE L1 -3598 2482 2221 2230 112 7 0 chr5 1207631 1207926 -201877606 - AluSx SINE Alu -15 297 1 21 0 0 0 chr5 1208111 1208132 -201877400 + AT_rich Low_complexity Low_complexity 1 21 0 14907 133 36 11 chr5 1208983 1210778 -201874754 + Tigger1 DNA MER2_type 1 1871 -547 1978 108 4 0 chr5 1210778 1211036 -201874496 + AluSx SINE Alu 39 297 -15 14907 133 36 11 chr5 1211036 1211599 -201873933 + Tigger1 DNA MER2_type 1871 2418 0 290 279 52 23 chr5 1214815 1214987 -201870545 + (TG)n Simple_repeat Simple_repeat 2 178 0 342 210 10 115 chr5 1215051 1215251 -201870281 + (TG)n Simple_repeat Simple_repeat 2 180 0 289 228 21 98 chr5 1215405 1215598 -201869934 + (TG)n Simple_repeat Simple_repeat 2 179 0 1792 112 4 27 chr5 1216075 1216335 -201869197 - AluSg SINE Alu -5 305 52 3480 191 36 3 chr5 1218684 1219398 -201866134 + L1MB3 LINE L1 5407 6144 -39 2716 214 142 1 chr5 1219412 1220226 -201865306 + L1ME1 LINE L1 5222 6161 -5 1681 268 115 30 chr5 1220743 1221101 -201864431 - L1ME LINE L1 -4588 1492 1166 1673 215 0 0 chr5 1221101 1221413 -201864119 - AluJo SINE Alu 0 312 1 1681 268 115 30 chr5 1221413 1221619 -201863913 - L1ME LINE L1 -4914 1166 979 1894 122 93 34 chr5 1221619 1221973 -201863559 + THE1C LTR MaLR 1 375 0 1681 268 115 30 chr5 1221973 1222539 -201862993 - L1ME LINE L1 -5101 979 282 1701 187 3 16 chr5 1222576 1222892 -201862640 - AluJb SINE Alu 0 312 1 2257 110 0 7 chr5 1222906 1223206 -201862326 - AluSc SINE Alu -11 298 1 228 250 31 0 chr5 1223398 1223462 -201862070 - L1ME LINE L1 -5957 113 48 183 100 0 0 chr5 1223524 1223554 -201861978 + (T)n Simple_repeat Simple_repeat 1 30 0 230 239 30 0 chr5 1226157 1226224 -201859308 - LTR23 LTR ERV1 -16 421 353 384 188 76 168 chr5 1226279 1226636 -201858896 - LTR56 LTR ERV1 -121 324 1 380 153 34 117 chr5 1227049 1227349 -201858183 + CT-rich Low_complexity Low_complexity 1 275 0 250 234 16 120 chr5 1227284 1227476 -201858056 + C-rich Low_complexity Low_complexity 5 176 0 * 282 246 5 128 chr5 1227442 1227645 -201857887 + CT-rich Low_complexity Low_complexity 1 178 0 448 255 57 6 chr5 1227723 1227880 -201857652 - HAL1 LINE L1 -725 1782 1618 397 321 55 18 chr5 1228314 1228479 -201857053 - HAL1 LINE L1 -1300 1207 1037 1390 126 38 25 chr5 1233065 1233322 -201852210 - MER1B DNA MER1_type 0 339 119 226 139 0 0 chr5 1233394 1233430 -201852102 - MER1B DNA MER1_type -168 129 134 226 139 0 0 chr5 1233458 1233494 -201852038 - MER1B DNA MER1_type -168 129 134 243 108 0 0 chr5 1233614 1233651 -201851881 - MER1B DNA MER1_type -168 129 133 276 81 0 0 chr5 1233676 1233713 -201851819 - MER1B DNA MER1_type -168 129 133 225 57 57 0 chr5 1233863 1233898 -201851634 - MER1B DNA MER1_type -168 129 133 709 178 89 13 chr5 1234735 1234892 -201850640 - MER1B DNA MER1_type -168 129 1 1502 144 137 39 chr5 1235014 1235298 -201850234 + AluJo SINE Alu 1 312 0 1213 171 83 0 chr5 1236011 1236228 -201849304 + MER46A DNA MER2_type 2 236 0 1426 178 103 11 chr5 1236376 1236657 -201848875 + AluJb SINE Alu 1 307 -5 304 242 0 30 chr5 1237980 1238046 -201847486 - HAL1 LINE L1 -1344 1163 1100 1518 148 81 4 chr5 1238053 1238324 -201847208 - AluJb SINE Alu -20 292 1 2198 106 23 3 chr5 1238368 1238670 -201846862 + AluSx SINE Alu 1 308 -4 506 331 74 8 chr5 1242050 1242307 -201843225 - L1M4 LINE L1 -1701 4445 4172 3122 104 89 4 chr5 1242308 1242778 -201842754 - MER9 LTR ERVK 0 511 2 16454 92 22 1 chr5 1242779 1245435 -201840097 - HERVK9 LTR ERVK 0 8033 3304 1093 155 0 0 chr5 1245425 1245599 -201839933 - HERVK9 LTR ERVK -2487 3429 3256 * 393 152 0 0 chr5 1245600 1245666 -201839866 - HERVK9 LTR ERVK -2595 3321 3256 372 171 0 0 chr5 1245663 1245733 -201839799 - HERVK9 LTR ERVK -2591 3325 3256 * 402 136 0 0 chr5 1245734 1245800 -201839732 - HERVK9 LTR ERVK -2595 3321 3256 388 167 56 22 chr5 1245797 1245887 -201839645 - HERVK9 LTR ERVK -2591 3325 3233 * 364 159 0 0 chr5 1245864 1245933 -201839599 - HERVK9 LTR ERVK -2591 3325 3257 * 1050 123 0 0 chr5 1245998 1246153 -201839379 - HERVK9 LTR ERVK -2591 3325 3171 588 62 12 0 chr5 1246149 1246230 -201839302 - HERVK9 LTR ERVK -2681 3235 3154 * 23982 79 6 4 chr5 1246221 1249449 -201836083 - HERVK9 LTR ERVK -2684 3232 1 2961 96 123 9 chr5 1249449 1249906 -201835626 - MER9 LTR ERVK 0 511 3 224 289 91 33 chr5 1249969 1250090 -201835442 + L2 LINE L2 3142 3269 -3 443 263 51 0 chr5 1250491 1250609 -201834923 - MER3 DNA MER1_type -78 131 8 243 276 110 8 chr5 1250697 1250824 -201834708 + MLT1J LTR MaLR 93 232 -279 2329 180 43 24 chr5 1251098 1251565 -201833967 + L1PB4 LINE L1 5679 6154 -2 21 57 0 19 chr5 1252010 1252032 -201833500 + AT_rich Low_complexity Low_complexity 1 22 -30 2252 115 3 0 chr5 1252032 1252327 -201833205 + AluSx SINE Alu 1 296 -16 21 57 0 19 chr5 1252327 1252357 -201833175 + AT_rich Low_complexity Low_complexity 22 52 0 1862 131 31 17 chr5 1252528 1252819 -201832713 - AluSx SINE Alu -17 295 1 2025 137 0 16 chr5 1253119 1253425 -201832107 - AluJb SINE Alu -11 301 1 410 160 25 14 chr5 1253456 1253654 -201831878 + AluJo SINE Alu 20 294 -18 392 235 39 0 chr5 1253862 1253964 -201831568 - L1ME1 LINE L1 -182 6378 6273 1571 151 65 48 chr5 1255153 1255445 -201830087 + AluJo SINE Alu 1 297 -15 2136 129 3 0 chr5 1255778 1256072 -201829460 + AluSx SINE Alu 1 295 -17 378 289 35 0 chr5 1257087 1257201 -201828331 - L2 LINE L2 -2 3311 3194 1556 121 62 107 chr5 1257269 1257625 -201827907 + MER2 DNA MER2_type 1 340 -5 2674 50 0 0 chr5 1257657 1257960 -201827572 - AluY SINE Alu -4 307 5 469 254 208 10 chr5 1259058 1259255 -201826277 - MIR SINE MIR -10 252 17 1744 183 0 32 chr5 1259581 1259892 -201825640 + AluJb SINE Alu 1 301 -11 2434 98 0 0 chr5 1260518 1260824 -201824708 - AluSx SINE Alu -6 306 1 2194 121 3 7 chr5 1261453 1261759 -201823773 - AluSx SINE Alu -7 305 1 22 35 0 0 chr5 1261816 1261845 -201823687 + AT_rich Low_complexity Low_complexity 1 29 0 796 177 118 23 chr5 1261860 1262080 -201823452 - L1MA9 LINE L1 -5 6307 6067 3932 160 52 33 chr5 1262397 1263326 -201822206 - L1MA9 LINE L1 -204 6108 5152 205 244 44 0 chr5 1263474 1263519 -201822013 + MIR3 SINE MIR 110 156 -52 406 249 124 23 chr5 1264272 1264449 -201821083 - MER3 DNA MER1_type -14 195 1 1297 242 33 41 chr5 1267225 1267712 -201817820 - L1ME1 LINE L1 -743 5797 5375 870 302 129 11 chr5 1267725 1268166 -201817366 - L1ME1 LINE L1 -1942 4598 4106 2202 204 125 42 chr5 1268449 1269397 -201816135 - L1ME1 LINE L1 -5180 1360 16 227 254 167 53 chr5 1269400 1269514 -201816018 - MIR3 SINE MIR -79 129 3 189 247 67 79 chr5 1273082 1273171 -201812361 - MIR SINE MIR -56 206 119 * 222 303 15 0 chr5 1273167 1273233 -201812299 - MIR SINE MIR -49 213 147 801 275 84 10 chr5 1273240 1273711 -201811821 - MER68 LTR ERV1 -5 557 12 252 250 43 43 chr5 1273731 1273823 -201811709 - MIR SINE MIR -146 116 25 2215 104 13 16 chr5 1274300 1274609 -201810923 - AluSx SINE Alu -4 308 1 2093 118 10 0 chr5 1274969 1275258 -201810274 - AluSx SINE Alu -20 292 1 245 324 37 37 chr5 1276735 1276871 -201808661 + MIR SINE MIR 117 252 -10 2147 122 26 0 chr5 1279307 1279610 -201805922 + AluSx SINE Alu 1 311 -1 2518 64 0 3 chr5 1280833 1281130 -201804402 + AluY SINE Alu 1 296 -15 219 231 0 39 chr5 1283435 1283513 -201802019 + (CCCCG)n Simple_repeat Simple_repeat 2 76 0 608 206 0 0 chr5 1284519 1284645 -201800887 - MLT2B1 LTR ERVL -394 126 1 1363 78 0 22 chr5 1284780 1284960 -201800572 - AluSc SINE Alu 0 309 134 204 267 0 56 chr5 1284963 1285053 -201800479 + L2 LINE L2 3224 3308 -5 317 283 63 61 chr5 1285272 1285475 -201800057 + MIR SINE MIR 14 212 -50 1489 159 101 7 chr5 1285608 1285885 -201799647 + AluJb SINE Alu 1 303 -9 2362 85 0 0 chr5 1286903 1287197 -201798335 - AluSc SINE Alu -15 294 1 762 180 36 6 chr5 1287548 1287715 -201797817 - L1MD1 LINE L1 0 6242 6071 2531 200 32 5 chr5 1287735 1288318 -201797214 - L1MC1 LINE L1 -245 6391 5814 1265 243 32 41 chr5 1291312 1291815 -201793717 - L1MC1 LINE L1 -743 5797 5360 891 304 125 7 chr5 1291812 1292253 -201793279 - L1MC1 LINE L1 -1942 4598 4106 * 2009 220 123 40 chr5 1293005 1293953 -201791579 - L1MC1 LINE L1 -5180 1360 16 214 254 167 53 chr5 1293956 1294070 -201791462 - MIR3 SINE MIR -79 129 3 182 247 67 79 chr5 1297603 1297692 -201787840 - MIR SINE MIR -56 206 119 * 225 303 15 0 chr5 1297688 1297754 -201787778 - MIR SINE MIR -49 213 147 850 273 84 10 chr5 1297761 1298232 -201787300 - MER68 LTR ERV1 -5 557 12 261 258 34 45 chr5 1298252 1298341 -201787191 - MIR SINE MIR -146 116 29 2131 104 13 16 chr5 1298821 1299130 -201786402 - AluSx SINE Alu -4 308 1 2020 118 10 0 chr5 1299489 1299778 -201785754 - AluSx SINE Alu -20 292 1 3280 208 36 66 chr5 1304300 1305285 -201780247 + LTR5 LTR ERVK 1 956 -13 498 225 11 18 chr5 1307545 1307708 -201777824 + MER58 DNA MER1_type 40 232 -109 268 263 12 0 chr5 1310346 1310426 -201775106 + MLT1H LTR MaLR 463 543 -6 431 216 6 0 chr5 1312613 1312780 -201772752 + GA-rich Low_complexity Low_complexity 1 168 0 240 179 0 36 chr5 1312785 1312841 -201772691 + (CAGAGA)n Simple_repeat Simple_repeat 4 57 0 331 261 11 0 chr5 1317768 1317860 -201767672 - L1MA10 LINE L1 -9 6325 6233 598 251 166 19 chr5 1317968 1318275 -201767257 - L1MEc LINE L1 -4182 2214 1863 724 182 0 54 chr5 1318276 1318424 -201767108 - AluJo SINE Alu -172 140 1 340 58 0 19 chr5 1318442 1318494 -201767038 - MER75 DNA T2_type 0 504 454 781 296 70 0 chr5 1318566 1318880 -201766652 - L1MEc LINE L1 -4653 1743 1408 1077 191 70 8 chr5 1318903 1319121 -201766411 + MLT2B3 LTR ERVL 282 520 -34 702 93 0 0 chr5 1319121 1319229 -201766303 + (TCTA)n Simple_repeat Simple_repeat 2 109 0 1077 191 70 8 chr5 1319229 1319267 -201766265 + MLT2B3 LTR ERVL 520 554 0 1396 288 73 67 chr5 1319268 1319431 -201766101 - L1MEc LINE L1 -5249 1147 986 2152 64 8 0 chr5 1319431 1319697 -201765835 - AluY SINE Alu -22 289 22 1396 288 73 67 chr5 1319697 1320646 -201764886 - L1MEc LINE L1 -5410 986 29 553 279 107 32 chr5 1321868 1322232 -201763300 + HAL1 LINE L1 1720 2140 -367 471 332 158 46 chr5 1322873 1323477 -201762055 + L1ME LINE L1 607 1148 -4965 587 252 64 36 chr5 1323852 1324102 -201761430 + L1ME LINE L1 2196 2452 -3944 1051 215 119 10 chr5 1324109 1324420 -201761112 - MER2 DNA MER2_type 0 345 1 649 290 60 17 chr5 1324420 1324772 -201760760 + L1ME LINE L1 2423 2789 -3426 552 253 179 16 chr5 1324811 1325119 -201760413 + MER50 LTR ERV1 10 367 -367 1592 196 76 10 chr5 1325288 1325685 -201759847 + MER50 LTR ERV1 312 734 0 1054 268 55 29 chr5 1325694 1326149 -201759383 + L1ME LINE L1 2852 3318 -2897 1497 210 146 7 chr5 1326369 1326779 -201758753 + LTR24 LTR ERV1 1 467 0 884 263 46 52 chr5 1328254 1328638 -201756894 + LTR24 LTR ERV1 186 467 0 446 238 0 48 chr5 1328639 1328786 -201756746 + (CCCCAG)n Simple_repeat Simple_repeat 2 141 0 332 181 0 58 chr5 1328816 1328971 -201756561 + (CCCCAG)n Simple_repeat Simple_repeat 3 148 0 502 231 9 0 chr5 1331324 1331432 -201754100 + LTR55 LTR ERV 119 227 -321 2182 114 3 0 chr5 1332519 1332818 -201752714 + AluSg SINE Alu 1 300 -10 2165 105 0 25 chr5 1333945 1334259 -201751273 + AluSc SINE Alu 1 306 -3 21 0 0 0 chr5 1335198 1335219 -201750313 + AT_rich Low_complexity Low_complexity 1 21 0 697 171 13 7 chr5 1336404 1336562 -201748970 + MER1B DNA MER1_type 1 129 -168 1344 126 34 25 chr5 1338253 1338511 -201747021 + MER1B DNA MER1_type 119 339 0 444 324 53 18 chr5 1343091 1343261 -201742271 + HAL1 LINE L1 1032 1207 -1300 343 263 33 70 chr5 1343695 1343908 -201741624 + HAL1 LINE L1 1618 1822 -685 332 257 0 46 chr5 1344454 1344629 -201740903 + C-rich Low_complexity Low_complexity 2 168 0 216 310 46 35 chr5 1347074 1347161 -201738371 + MIR SINE MIR 171 258 -4 748 142 0 0 chr5 1347745 1347858 -201737674 + AluJb SINE Alu 1 113 -199 1218 157 44 0 chr5 1348646 1348850 -201736682 + AluJb SINE Alu 85 297 -15 558 132 0 0 chr5 1349089 1349165 -201736367 - FLAM_A SINE Alu -24 118 43 2026 110 0 14 chr5 1349732 1349901 -201735631 - AluY SINE Alu -11 300 135 2378 75 13 0 chr5 1349901 1350207 -201735325 - AluY SINE Alu 0 311 2 2026 110 0 14 chr5 1350207 1350329 -201735203 - AluY SINE Alu -176 135 13 1538 97 14 0 chr5 1350332 1350549 -201734983 + AluSg/x SINE Alu 90 309 -1 518 274 42 58 chr5 1350833 1351035 -201734497 - L2 LINE L2 0 3313 3114 1886 160 3 13 chr5 1351035 1351347 -201734185 + AluJb SINE Alu 1 309 -3 518 274 42 58 chr5 1351347 1351385 -201734147 - L2 LINE L2 -199 3114 3077 207 0 0 0 chr5 1352391 1352414 -201733118 + (A)n Simple_repeat Simple_repeat 1 23 0 280 128 0 0 chr5 1352435 1352482 -201733050 - MADE1 DNA Mariner -33 47 1 257 381 32 23 chr5 1352577 1352795 -201732737 - L2 LINE L2 -199 3073 2854 334 273 75 7 chr5 1352809 1353010 -201732522 - L2 LINE L2 -339 2974 2748 281 339 35 12 chr5 1359893 1360064 -201725468 + MLT1K LTR MaLR 413 587 -1 311 65 22 0 chr5 1360854 1360900 -201724632 + (TA)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr5 1361176 1361197 -201724335 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 250 268 78 42 chr5 1364306 1364448 -201721084 - L1ME LINE L1 -347 5823 5677 277 243 9 37 chr5 1364706 1364813 -201720719 - L1ME LINE L1 -763 5399 5296 2207 122 0 0 chr5 1364819 1365131 -201720401 - AluSx SINE Alu 0 312 1 332 324 65 6 chr5 1365240 1365410 -201720122 - L2 LINE L2 -433 2881 2702 1238 310 47 19 chr5 1366610 1367596 -201717936 + L1ME1 LINE L1 4976 5994 -172 2885 171 36 2 chr5 1368309 1368787 -201716745 - LOR1a LTR ERV1 0 497 4 365 342 81 52 chr5 1368973 1369318 -201716214 + L1ME3A LINE L1 5682 6036 -134 697 253 45 5 chr5 1370056 1370254 -201715278 - L1MA10 LINE L1 -10 6324 6119 201 381 0 0 chr5 1371581 1371741 -201713791 + C-rich Low_complexity Low_complexity 1 160 0 2316 84 0 0 chr5 1372126 1372423 -201713109 - AluY SINE Alu -14 297 1 23 0 0 0 chr5 1372425 1372448 -201713084 + AT_rich Low_complexity Low_complexity 1 23 0 463 252 94 30 chr5 1372634 1372984 -201712548 + MER77 LTR ERV1 1 451 -154 342 0 0 0 chr5 1374645 1374683 -201710849 + (TG)n Simple_repeat Simple_repeat 1 38 0 195 42 0 0 chr5 1374766 1374790 -201710742 + (TG)n Simple_repeat Simple_repeat 1 24 0 213 39 0 0 chr5 1375066 1375092 -201710440 + (TG)n Simple_repeat Simple_repeat 1 26 0 225 290 0 0 chr5 1376232 1376301 -201709231 - MER20B DNA MER1_type -234 549 481 638 267 117 114 chr5 1376878 1377376 -201708156 - L1MEd LINE L1 -4960 1159 661 732 203 0 8 chr5 1377430 1377563 -201707969 - FLAM_A SINE Alu 0 133 2 1979 131 30 7 chr5 1384256 1384561 -201700971 - AluSx SINE Alu 0 312 1 1181 136 0 0 chr5 1385240 1385416 -201700116 + AluSg/x SINE Alu 137 312 0 862 198 19 6 chr5 1386041 1386198 -201699334 - AluJb SINE Alu -14 298 140 866 216 6 22 chr5 1386253 1386434 -201699098 - AluJb SINE Alu -13 299 122 225 337 0 0 chr5 1390575 1390661 -201694871 + C-rich Low_complexity Low_complexity 1 86 0 1850 126 3 11 chr5 1392348 1392633 -201692899 + AluSx SINE Alu 6 288 -24 184 278 63 40 chr5 1392838 1392964 -201692568 - L2 LINE L2 -332 2981 2853 24 53 0 0 chr5 1394141 1394179 -201691353 + GC_rich Low_complexity Low_complexity 1 38 0 187 349 128 0 chr5 1394947 1395033 -201690499 - MIR SINE MIR -118 144 48 2006 134 0 34 chr5 1396274 1396679 -201688853 - AluSg SINE Alu 0 394 1 1639 101 0 13 chr5 1396830 1397058 -201688474 + AluSp SINE Alu 86 310 -3 2281 97 0 0 chr5 1398013 1398324 -201687208 - AluSq SINE Alu -2 311 1 3503 204 39 40 chr5 1398340 1399019 -201686513 - L1MB5 LINE L1 -9 6165 5487 2088 103 3 3 chr5 1399019 1399309 -201686223 + AluSx SINE Alu 1 290 -22 3503 204 39 40 chr5 1399309 1399471 -201686061 - L1MB5 LINE L1 -687 5487 5323 2887 196 16 2 chr5 1399471 1400018 -201685514 - L1PB4 LINE L1 0 6156 5602 2912 49 0 0 chr5 1400026 1400375 -201685157 - L1PA4 LINE L1 0 6155 5807 2077 114 19 33 chr5 1400375 1400498 -201685034 - L1PB4 LINE L1 -687 5616 5493 2048 102 58 0 chr5 1400498 1400793 -201684739 - AluSx SINE Alu 0 312 1 2077 114 19 33 chr5 1400793 1401138 -201684394 - L1PB4 LINE L1 -810 5493 5150 987 179 53 11 chr5 1401179 1401369 -201684163 + THE1C LTR MaLR 1 198 -177 1566 189 16 26 chr5 1401442 1401748 -201683784 - AluJo SINE Alu -9 303 1 8925 175 69 53 chr5 1401751 1402626 -201682906 - L1PB4 LINE L1 -1505 4641 3782 1773 154 14 0 chr5 1402626 1402906 -201682626 - AluSx SINE Alu -22 290 7 8925 175 69 53 chr5 1402906 1403112 -201682420 - L1PB4 LINE L1 -2364 3782 3581 2321 66 0 13 chr5 1403112 1403417 -201682115 - AluSc SINE Alu -8 301 1 8925 175 69 53 chr5 1403417 1403851 -201681681 - L1PB4 LINE L1 -2565 3581 3155 2304 139 3 15 chr5 1403851 1404190 -201681342 + MER1B DNA MER1_type 1 335 -2 8925 175 69 53 chr5 1404190 1404506 -201681026 - L1PB4 LINE L1 -2991 3155 2846 2357 89 0 0 chr5 1404506 1404808 -201680724 - AluSg SINE Alu -8 302 1 8925 175 69 53 chr5 1404808 1405326 -201680206 - L1PB4 LINE L1 -3300 2846 2251 798 154 0 0 chr5 1405332 1405449 -201680083 - FLAM_C SINE Alu -25 118 2 9387 235 53 52 chr5 1405454 1405558 -201679974 - L1M4c LINE L1 -3886 2964 2862 2141 123 0 0 chr5 1405558 1405858 -201679674 + AluSx SINE Alu 3 302 -10 9387 235 53 52 chr5 1405858 1408700 -201676832 - L1M4c LINE L1 -3988 2862 13 1632 186 14 132 chr5 1408706 1409265 -201676267 - L1M4 LINE L1 -810 5336 4844 1208 142 0 26 chr5 1409642 1409832 -201675700 - AluJb SINE Alu -33 279 95 27 0 0 0 chr5 1409835 1409862 -201675670 + AT_rich Low_complexity Low_complexity 1 27 0 385 309 51 6 chr5 1410118 1410293 -201675239 - LTR41 LTR ERVL -590 183 1 1113 286 94 6 chr5 1410326 1410802 -201674730 - L1MEc LINE L1 -4434 1962 1445 871 143 8 0 chr5 1410803 1410936 -201674596 + AluJb SINE Alu 1 134 -178 427 279 53 13 chr5 1410937 1411163 -201674369 - L1MEc LINE L1 -4942 1454 1220 2808 222 60 68 chr5 1411166 1411349 -201674183 - L1M4 LINE L1 -1734 4412 4229 1739 159 3 41 chr5 1411349 1411663 -201673869 - AluJo SINE Alu -10 302 1 2808 222 60 68 chr5 1411663 1412537 -201672995 - L1M4 LINE L1 -1917 4229 3350 1679 183 55 33 chr5 1412537 1412903 -201672629 - MLT1A2 LTR MaLR 0 374 1 225 0 0 0 chr5 1412907 1412932 -201672600 + (TA)n Simple_repeat Simple_repeat 1 25 0 2282 101 0 3 chr5 1412932 1413240 -201672292 - AluSq SINE Alu -6 307 1 2181 125 0 0 chr5 1413246 1413557 -201671975 - AluSx SINE Alu -1 311 1 2808 222 60 68 chr5 1413557 1413728 -201671804 - L1M4 LINE L1 -2803 3343 3179 213 121 0 0 chr5 1413728 1413761 -201671771 + (TCCCC)n Simple_repeat Simple_repeat 3 35 0 1073 140 38 11 chr5 1413761 1413947 -201671585 - AluSg/x SINE Alu -2 310 120 2471 223 101 13 chr5 1413947 1414801 -201670731 - L1M4 LINE L1 -2980 3166 2238 244 200 17 0 chr5 1416686 1416806 -201668726 + (TG)n Simple_repeat Simple_repeat 1 122 0 387 112 10 92 chr5 1416818 1417014 -201668518 + (TG)n Simple_repeat Simple_repeat 1 180 0 328 246 16 33 chr5 1417080 1417263 -201668269 + (TG)n Simple_repeat Simple_repeat 1 180 0 548 145 0 25 chr5 1417299 1417458 -201668074 + (TG)n Simple_repeat Simple_repeat 2 156 0 350 114 14 0 chr5 1417615 1417685 -201667847 + (TG)n Simple_repeat Simple_repeat 2 72 0 279 231 51 39 chr5 1417952 1418030 -201667502 - LTR40c LTR ERVL -274 191 113 822 268 49 4 chr5 1418778 1419024 -201666508 + LTR40b LTR ERVL 196 452 -10 243 263 100 0 chr5 1419037 1419117 -201666415 - L1ME LINE L1 -469 5652 5565 369 208 144 58 chr5 1419171 1419344 -201666188 - L1ME LINE L1 -2366 5442 5255 2786 235 75 35 chr5 1420424 1421361 -201664171 - L1ME1 LINE L1 -5 6161 5128 2446 58 0 10 chr5 1421361 1421671 -201663861 + AluY SINE Alu 1 307 -4 2786 235 75 35 chr5 1421671 1422364 -201663168 - L1ME1 LINE L1 -1038 5128 4464 3920 221 25 2 chr5 1422836 1423819 -201661713 + L1MB5 LINE L1 5170 6172 -2 818 258 48 98 chr5 1431634 1432034 -201653498 + MLT1B LTR MaLR 3 382 -8 3497 241 67 33 chr5 1432034 1432601 -201652931 + MLT1A2-int LTR MaLR 15 561 -1174 2051 99 32 0 chr5 1432601 1432885 -201652647 + AluSg1 SINE Alu 1 293 -16 3497 241 67 33 chr5 1432885 1433617 -201651915 + MLT1A2-int LTR MaLR 561 1735 0 1564 193 45 58 chr5 1433617 1433996 -201651536 + MLT1A2 LTR MaLR 1 374 0 396 337 22 71 chr5 1435719 1436120 -201649412 + L1MDa LINE L1 1846 2242 -4298 1162 308 92 10 chr5 1436187 1437263 -201648269 + L1MDa LINE L1 2436 3574 -2966 513 235 42 25 chr5 1437332 1437570 -201647962 + L1MDa LINE L1 3727 3968 -2572 2300 240 90 74 chr5 1437581 1438571 -201646961 + L1MC4a LINE L1 6540 7545 -263 267 267 27 0 chr5 1438658 1438733 -201646799 + L1MC4 LINE L1 7965 8041 -1 476 248 151 31 chr5 1442558 1442933 -201642599 - MLT2B2 LTR ERVL -2 513 57 22 35 0 0 chr5 1445463 1445492 -201640040 + GC_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr5 1445570 1445591 -201639941 + GC_rich Low_complexity Low_complexity 1 21 0 301 172 78 0 chr5 1450114 1450178 -201635354 - U3 snRNA snRNA -147 70 2 8275 225 61 62 chr5 1450608 1452431 -201633101 - L1ME1 LINE L1 -18 6082 4259 2622 204 40 42 chr5 1452431 1452984 -201632548 - MLT2B3 LTR ERVL -2 552 1 8275 225 61 62 chr5 1452984 1453187 -201632345 - L1ME1 LINE L1 -1841 4259 4057 2399 78 3 3 chr5 1453187 1453494 -201632038 - AluSg SINE Alu -3 307 1 8275 225 61 62 chr5 1453494 1455235 -201630297 - L1ME1 LINE L1 -2043 4057 2319 1709 161 13 32 chr5 1455235 1455545 -201629987 - AluJo SINE Alu -8 304 1 8275 225 61 62 chr5 1455545 1456112 -201629420 - L1ME1 LINE L1 -3781 2319 1753 2057 132 7 0 chr5 1456113 1456401 -201629131 - AluSq SINE Alu -23 290 1 317 299 0 36 chr5 1456793 1456960 -201628572 + (CTGGGG)n Simple_repeat Simple_repeat 2 162 0 1813 138 14 30 chr5 1457626 1457923 -201627609 - AluJb SINE Alu -20 292 1 238 221 23 29 chr5 1458722 1459307 -201626225 + G-rich Low_complexity Low_complexity 1 581 0 257 266 3 74 chr5 1462424 1462624 -201622908 + C-rich Low_complexity Low_complexity 1 185 0 3645 221 26 2 chr5 1463234 1464216 -201621316 + L1MB5 LINE L1 5170 6172 -2 716 258 48 98 chr5 1470940 1471340 -201614192 + MLT1B LTR MaLR 3 382 -8 2212 192 72 18 chr5 1471340 1471907 -201613625 + MLT1B-int LTR MaLR 15 612 -759 2342 63 0 10 chr5 1471920 1472219 -201613313 + AluY SINE Alu 12 307 -4 1669 232 59 33 chr5 1472237 1472901 -201612631 - L1M4 LINE L1 -991 5155 4475 1737 263 82 24 chr5 1473351 1473488 -201612044 - L1ME1 LINE L1 -4398 1682 1554 1719 93 4 0 chr5 1473488 1473714 -201611818 + AluSg SINE Alu 1 227 -83 1737 263 82 24 chr5 1473714 1473786 -201611746 - L1ME1 LINE L1 -4526 1554 1488 1762 196 6 6 chr5 1473786 1474098 -201611434 - AluJo SINE Alu 0 312 1 1737 263 82 24 chr5 1474098 1474907 -201610625 - L1ME1 LINE L1 -4592 1488 627 1663 223 94 28 chr5 1474907 1475377 -201610155 + MLT1D LTR MaLR 1 501 -4 1737 263 82 24 chr5 1475377 1475429 -201610103 - L1ME1 LINE L1 -5453 627 579 301 299 112 48 chr5 1475728 1476022 -201609510 - L1ME1 LINE L1 -5573 497 185 795 209 199 67 chr5 1476391 1476797 -201608735 - MLT1C LTR MaLR -2 465 6 256 319 92 18 chr5 1476944 1477107 -201608425 - MIR SINE MIR -32 230 56 391 341 17 23 chr5 1478456 1478662 -201606870 + GA-rich Low_complexity Low_complexity 1 204 0 559 345 33 86 chr5 1478670 1478737 -201606795 + HAL1 LINE L1 877 946 -1561 1283 201 34 0 chr5 1478737 1478976 -201606556 + L1MA2 LINE L1 6058 6304 0 559 345 33 86 chr5 1478976 1479267 -201606265 + HAL1 LINE L1 946 1216 -1291 317 302 0 0 chr5 1479355 1479451 -201606081 + HAL1 LINE L1 1397 1492 -1015 429 205 0 76 chr5 1479936 1480121 -201605411 + (CGGGG)n Simple_repeat Simple_repeat 2 172 0 204 177 55 37 chr5 1480122 1480286 -201605246 + (CAGGG)n Simple_repeat Simple_repeat 5 171 0 321 223 29 43 chr5 1480302 1480441 -201605091 + (CAGGG)n Simple_repeat Simple_repeat 5 141 0 334 371 14 68 chr5 1480444 1480724 -201604808 + HAL1 LINE L1 2211 2475 -32 2173 103 33 0 chr5 1481604 1481905 -201603627 - AluSx SINE Alu -1 311 1 305 299 13 25 chr5 1487570 1487710 -201597822 - MIR SINE MIR -59 149 44 331 266 62 0 chr5 1489823 1489936 -201595596 + L1M3 LINE L1 5700 5819 -364 958 243 43 0 chr5 1489941 1490359 -201595173 + L1M2 LINE L1 5115 5547 -744 277 160 0 0 chr5 1490366 1490416 -201595116 + L1MB3 LINE L1 5498 5547 -757 265 160 0 0 chr5 1490423 1490473 -201595059 + L1MB3 LINE L1 5498 5547 -757 265 160 0 0 chr5 1490480 1490530 -201595002 + L1MB3 LINE L1 5498 5547 -758 1700 223 23 56 chr5 1490537 1491057 -201594475 + L1MA8 LINE L1 5498 6000 -291 904 218 125 0 chr5 1491070 1491359 -201594173 + L1MB3 LINE L1 5817 6141 -42 2322 83 3 7 chr5 1491370 1491671 -201593861 + AluSx SINE Alu 1 300 -12 240 293 61 0 chr5 1493738 1493837 -201591695 + LTR37A LTR ERV1 302 406 -20 426 399 42 40 chr5 1494436 1494880 -201590652 + L1M4 LINE L1 3442 3888 -2258 546 349 91 22 chr5 1494937 1495535 -201589997 - L1M4 LINE L1 -1229 4917 4255 2111 95 10 14 chr5 1495535 1495852 -201589680 - AluSq SINE Alu 0 313 1 546 349 91 22 chr5 1495852 1496010 -201589522 - L1M4 LINE L1 -1891 4255 4109 683 313 0 0 chr5 1496019 1496214 -201589318 - MER58A DNA MER1_type -2 222 28 788 365 31 15 chr5 1496249 1496985 -201588547 - L1M4 LINE L1 -2043 4103 3356 * 2079 268 80 10 chr5 1496984 1498065 -201587467 - L1ME2 LINE L1 -141 6023 4865 1081 226 36 39 chr5 1498112 1498213 -201587319 - L1ME2 LINE L1 -1394 4752 4652 1871 140 13 48 chr5 1498213 1498527 -201587005 - AluJo SINE Alu -9 303 1 1081 226 36 39 chr5 1498527 1498784 -201586748 - L1ME2 LINE L1 -1494 4652 4395 * 1119 249 40 34 chr5 1498782 1499255 -201586277 - L1ME2 LINE L1 -2615 3531 3056 293 284 29 7 chr5 1499479 1499642 -201585890 + L1ME LINE L1 5265 5431 -739 655 316 165 34 chr5 1500157 1500720 -201584812 + L1 LINE L1 3307 3943 -2203 1689 113 0 0 chr5 1500725 1500954 -201584578 - AluSg/x SINE Alu -1 309 81 2316 85 0 0 chr5 1501998 1502304 -201583228 + AluSg SINE Alu 1 306 -4 480 353 39 62 chr5 1502501 1502807 -201582725 + L1MEd LINE L1 636 934 -5185 2182 101 7 7 chr5 1507456 1507753 -201577779 - AluSx SINE Alu -15 297 1 390 168 22 0 chr5 1509075 1509212 -201576320 + (CACG)n Simple_repeat Simple_repeat 4 143 0 27 29 0 0 chr5 1512916 1512950 -201572582 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr5 1513601 1513624 -201571908 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1431 60 6 6 chr5 1513626 1513809 -201571723 - AluY SINE Alu -32 279 97 588 198 25 0 chr5 1514295 1514416 -201571116 - MER63 DNA MER1_type -312 750 1 996 151 3 8 chr5 1514498 1514854 -201570678 + (TGGA)n Simple_repeat Simple_repeat 1 355 0 1019 137 4 6 chr5 1514895 1515417 -201570115 + (TGGA)n Simple_repeat Simple_repeat 1 521 0 206 273 0 0 chr5 1515668 1515712 -201569820 - MIR3 SINE MIR -13 195 152 237 100 50 0 chr5 1515870 1515910 -201569622 - Charlie3 DNA MER1_type -65 2645 2604 3214 141 17 30 chr5 1516825 1517356 -201568176 - MER1A DNA MER1_type -3 524 1 896 144 0 14 chr5 1525420 1525559 -201559973 + AluJo SINE Alu 1 137 -175 2084 148 0 0 chr5 1527417 1527728 -201557804 - AluSx SINE Alu -1 311 1 243 287 83 46 chr5 1527920 1528028 -201557504 - L2 LINE L2 -1 3271 3160 396 285 51 43 chr5 1528436 1528671 -201556861 - L1M4 LINE L1 -813 5333 5097 437 373 54 19 chr5 1529179 1529495 -201556037 - L1MEd LINE L1 -5733 386 60 1804 136 0 52 chr5 1529533 1529841 -201555691 - AluSx SINE Alu -20 292 1 2407 57 3 13 chr5 1529851 1530165 -201555367 - AluY SINE Alu 0 311 1 399 113 0 0 chr5 1531544 1531615 -201553917 + (CGG)n Simple_repeat Simple_repeat 1 71 0 341 306 131 31 chr5 1532826 1533048 -201552484 + L1ME4a LINE L1 5795 6038 -83 239 264 80 24 chr5 1533180 1533305 -201552227 + L1ME4a LINE L1 5990 6121 0 2487 54 0 16 chr5 1533674 1533990 -201551542 - AluY SINE Alu 0 311 1 2244 109 3 3 chr5 1534910 1535222 -201550310 + AluSx SINE Alu 1 312 0 2798 203 45 3 chr5 1537614 1538265 -201547267 - L1MB3 LINE L1 -2 6417 5740 * 9787 178 63 35 chr5 1538244 1538299 -201547233 - L1MB3 LINE L1 -3180 3202 3150 2216 85 0 0 chr5 1538299 1538607 -201546925 + AluSq SINE Alu 1 308 0 9787 178 63 35 chr5 1538607 1541638 -201543894 - L1MB3 LINE L1 -3232 3150 25 325 338 54 22 chr5 1542646 1542868 -201542664 - MIR SINE MIR -29 233 5 180 0 0 0 chr5 1543204 1543224 -201542308 + (T)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr5 1543980 1544008 -201541524 + AT_rich Low_complexity Low_complexity 1 28 0 1640 71 0 5 chr5 1544028 1544239 -201541293 - AluY SINE Alu -101 210 1 920 227 14 0 chr5 1544436 1544643 -201540889 + MER2 DNA MER2_type 1 210 -135 21 0 0 0 chr5 1544644 1544665 -201540867 + AT_rich Low_complexity Low_complexity 1 21 0 265 221 59 0 chr5 1544768 1544836 -201540696 - L2 LINE L2 -18 3295 3224 655 165 0 0 chr5 1546746 1546843 -201538689 - AluSg/x SINE Alu -19 291 195 253 257 118 40 chr5 1548571 1548723 -201536809 - L1MC5 LINE L1 -817 7144 6981 21 0 0 0 chr5 1548945 1548966 -201536566 + AT_rich Low_complexity Low_complexity 1 21 0 277 220 90 33 chr5 1549089 1549118 -201536414 - AluJo/F(R)AM SINE Alu -79 223 262 2257 110 0 0 chr5 1549118 1549418 -201536114 + AluSg SINE Alu 1 300 -10 277 220 90 33 chr5 1549418 1549514 -201536018 - AluJo/F(R)AM SINE Alu -39 263 174 400 343 45 8 chr5 1550418 1550552 -201534980 + L1ME4a LINE L1 3698 3836 -2310 2069 108 7 0 chr5 1550605 1550893 -201534639 + AluSp SINE Alu 1 290 -23 421 327 59 96 chr5 1551061 1551729 -201533803 + L1ME4a LINE L1 5256 5882 -239 332 314 54 76 chr5 1557407 1557722 -201527810 + L1M2 LINE L1 1603 1910 -4939 2178 90 10 10 chr5 1558158 1558447 -201527085 + AluSx SINE Alu 1 289 -23 200 188 0 0 chr5 1559240 1559272 -201526260 + MIR SINE MIR 219 250 -12 213 209 0 23 chr5 1559627 1559670 -201525862 + (CACG)n Simple_repeat Simple_repeat 3 44 0 22 0 0 0 chr5 1562307 1562329 -201523203 + GC_rich Low_complexity Low_complexity 1 22 0 29 60 0 0 chr5 1562409 1562459 -201523073 + GC_rich Low_complexity Low_complexity 1 50 0 22 80 0 0 chr5 1562670 1562720 -201522812 + GC_rich Low_complexity Low_complexity 1 50 0 209 262 16 71 chr5 1563489 1563672 -201521860 + GA-rich Low_complexity Low_complexity 2 174 0 241 271 6 55 chr5 1563924 1564105 -201521427 + GA-rich Low_complexity Low_complexity 5 176 0 2063 109 3 0 chr5 1570159 1570442 -201515090 - AluSx SINE Alu -15 297 14 23 0 0 0 chr5 1573420 1573443 -201512089 + AT_rich Low_complexity Low_complexity 1 23 0 203 187 13 80 chr5 1575816 1575891 -201509641 + G-rich Low_complexity Low_complexity 1 70 0 328 137 37 100 chr5 1576468 1576658 -201508874 + (CACCG)n Simple_repeat Simple_repeat 2 179 0 373 132 49 81 chr5 1576723 1577101 -201508431 + (CACCG)n Simple_repeat Simple_repeat 1 365 0 238 268 0 0 chr5 1577114 1577170 -201508362 + MLT1B LTR MaLR 330 385 -5 2324 78 0 0 chr5 1577209 1577503 -201508029 - AluSx SINE Alu -18 294 1 21 0 0 0 chr5 1778789 1778810 -201306722 + AT_rich Low_complexity Low_complexity 1 21 0 205 330 29 10 chr5 1779101 1779204 -201306328 + (CATA)n Simple_repeat Simple_repeat 3 107 0 * 215 314 0 14 chr5 1779136 1779206 -201306326 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 566 220 6 12 chr5 1781837 1782482 -201303050 + (CTCA)n Simple_repeat Simple_repeat 1 641 0 466 241 6 6 chr5 1782846 1783176 -201302356 + (CTCA)n Simple_repeat Simple_repeat 1 330 0 206 231 15 0 chr5 1783208 1783273 -201302259 + (CTCA)n Simple_repeat Simple_repeat 2 67 0 263 245 11 0 chr5 1783375 1783469 -201302063 + (TTCA)n Simple_repeat Simple_repeat 1 95 0 1990 156 38 26 chr5 1784062 1784297 -201301235 - MSTB LTR MaLR 0 426 182 2166 139 18 0 chr5 1784297 1784628 -201300904 - MER1B DNA MER1_type 0 337 1 1990 156 38 26 chr5 1784628 1784809 -201300723 - MSTB LTR MaLR -244 182 5 501 183 26 0 chr5 1784800 1784915 -201300617 - MSTB LTR MaLR -304 122 5 * 501 183 26 0 chr5 1784906 1785021 -201300511 - MSTB LTR MaLR -304 122 5 252 149 60 0 chr5 1785012 1785079 -201300453 - MSTB2 LTR MaLR -319 138 68 * 2116 115 3 6 chr5 1787883 1788196 -201297336 - AluSx SINE Alu 0 312 1 374 289 66 68 chr5 1789438 1789874 -201295658 - MLT1D LTR MaLR -3 464 1 567 283 60 92 chr5 1789887 1790255 -201295277 - MLT1D-int LTR MaLR -15 1356 1001 223 354 12 6 chr5 1791291 1791455 -201294077 + C-rich Low_complexity Low_complexity 3 167 0 * 272 193 0 86 chr5 1791351 1791548 -201293984 + CT-rich Low_complexity Low_complexity 1 180 0 * 410 145 0 88 chr5 1791409 1791774 -201293758 + (CCTCG)n Simple_repeat Simple_repeat 1 332 0 372 270 22 28 chr5 1792569 1792805 -201292727 + G-rich Low_complexity Low_complexity 1 234 0 444 180 81 12 chr5 1794801 1794962 -201290570 + (CCCCAG)n Simple_repeat Simple_repeat 6 177 0 765 208 0 0 chr5 1795411 1795589 -201289943 + (CTCA)n Simple_repeat Simple_repeat 1 178 0 210 315 0 14 chr5 1803069 1803142 -201282390 + G-rich Low_complexity Low_complexity 4 75 0 47 104 0 0 chr5 1805412 1805585 -201279947 + GC_rich Low_complexity Low_complexity 1 173 0 1643 98 102 70 chr5 1807269 1807554 -201277978 - AluSx SINE Alu -15 297 4 240 366 12 6 chr5 1813461 1813633 -201271899 + (TATG)n Simple_repeat Simple_repeat 1 173 0 * 309 336 0 0 chr5 1813558 1813671 -201271861 + (TG)n Simple_repeat Simple_repeat 1 113 0 183 42 0 0 chr5 1817356 1817380 -201268152 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 1184 101 28 11 chr5 1818502 1818680 -201266852 + L1PA10 LINE L1 5978 6158 -10 2210 101 0 3 chr5 1818735 1819032 -201266500 + AluSg SINE Alu 1 296 -14 676 260 97 8 chr5 1819248 1819506 -201266026 + L1ME3A LINE L1 5584 5864 -306 831 227 122 18 chr5 1819776 1820111 -201265421 + MLT1B LTR MaLR 21 390 0 429 180 79 29 chr5 1820138 1820277 -201265255 + L1ME3A LINE L1 6020 6165 -5 229 319 36 0 chr5 1820349 1820487 -201265045 + L1MC4 LINE L1 6963 7105 -937 424 337 137 4 chr5 1820489 1820738 -201264794 + L1M4 LINE L1 2802 3083 -3063 2026 119 7 0 chr5 1821213 1821507 -201264025 - AluSx SINE Alu -16 296 1 1676 154 222 3 chr5 1823458 1823809 -201261723 + MSTA LTR MaLR 1 428 0 8648 130 18 52 chr5 1823811 1824231 -201261301 + MSTA-int LTR MaLR 3 436 -1144 1899 145 9 28 chr5 1824231 1824549 -201260983 - AluSx SINE Alu 0 312 1 8648 130 18 52 chr5 1824549 1825756 -201259776 + MSTA-int LTR MaLR 436 1575 -5 1751 148 195 11 chr5 1825764 1826123 -201259409 + MSTA LTR MaLR 4 428 0 480 235 53 8 chr5 1827723 1827855 -201257677 + MER34 LTR ERV1 120 257 -285 1389 189 261 3 chr5 1827915 1828291 -201257241 - MER101 LTR ERV1 -1 473 1 344 336 35 0 chr5 1828295 1828438 -201257094 + MER34 LTR ERV1 356 503 -39 1236 152 140 16 chr5 1828886 1829143 -201256389 - MSTA LTR MaLR -139 289 1 9221 134 9 40 chr5 1829143 1830771 -201254761 - MSTA-int LTR MaLR 0 1580 3 1816 126 161 34 chr5 1830773 1830819 -201254713 - MSTA LTR MaLR 0 428 389 2328 81 0 3 chr5 1830819 1831123 -201254409 - AluSq SINE Alu 0 303 1 1816 126 161 34 chr5 1831123 1831455 -201254077 - MSTA LTR MaLR -39 389 1 1721 159 26 16 chr5 1834612 1834920 -201250612 + AluJo SINE Alu 1 311 -1 292 281 56 0 chr5 1837481 1837570 -201247962 - MER58B DNA MER1_type -6 335 242 1150 240 68 29 chr5 1837659 1838205 -201247327 + L1MEc LINE L1 871 1437 -5170 524 205 150 0 chr5 1838207 1838334 -201247198 + MER3 DNA MER1_type 64 209 0 255 240 0 0 chr5 1838294 1838344 -201247188 - MER3 DNA MER1_type -122 87 38 * 380 282 89 8 chr5 1838350 1838474 -201247058 + L1MEc LINE L1 2238 2371 -4055 1284 266 112 24 chr5 1838484 1839426 -201246106 + L1MEc LINE L1 2452 3494 -2932 344 284 40 57 chr5 1839480 1839656 -201245876 + L1MEc LINE L1 4383 4555 -1871 205 178 0 0 chr5 1840542 1840587 -201244945 + A-rich Low_complexity Low_complexity 1 45 0 2101 101 39 3 chr5 1840590 1840876 -201244656 - AluSg SINE Alu -14 296 1 194 0 39 0 chr5 1841235 1841261 -201244271 + (TG)n Simple_repeat Simple_repeat 2 28 0 606 265 52 13 chr5 1841924 1842154 -201243378 - Charlie5 DNA MER1_type -35 2577 2339 613 306 8 35 chr5 1843425 1843680 -201241852 + L1MEd LINE L1 30 277 -5768 2809 248 83 15 chr5 1843740 1845133 -201240399 + L1MEd LINE L1 223 1689 -4854 1985 243 23 2 chr5 1845133 1845606 -201239926 + L1MC3 LINE L1 7302 7784 -1 22 0 0 0 chr5 1845612 1845634 -201239898 + AT_rich Low_complexity Low_complexity 1 22 0 250 329 0 0 chr5 1845903 1845982 -201239550 + MIR3 SINE MIR 110 188 -20 321 248 127 6 chr5 1847191 1847348 -201238184 + LTR52 LTR ERVL 167 342 -79 230 359 23 8 chr5 1847586 1847714 -201237818 + MIR3 SINE MIR 71 200 -8 533 271 39 0 chr5 1849927 1850082 -201235450 + MER69 DNA AcHobo 72 232 -994 283 261 49 28 chr5 1851621 1851763 -201233769 + L1MEd LINE L1 438 582 -5972 877 307 94 76 chr5 1851833 1852746 -201232786 + L1MEd LINE L1 715 1644 -4910 364 285 71 57 chr5 1852744 1852892 -201232640 + L1MEd LINE L1 1566 1710 -1215 * 2624 37 3 0 chr5 1852892 1853188 -201232344 - AluY SINE Alu -14 297 1 364 285 71 57 chr5 1853188 1853423 -201232109 + L1MEd LINE L1 1710 2039 -886 2968 104 21 0 chr5 1853461 1854184 -201231348 + L1P4 LINE L1 4917 5652 -516 493 290 163 23 chr5 1854284 1854591 -201230941 + L1MEd LINE L1 3330 3679 -2885 305 296 45 62 chr5 1854611 1854787 -201230745 + L1MEd LINE L1 4521 4693 -1871 3277 57 16 11 chr5 1855541 1855983 -201229549 + MLT2A1 LTR ERVL 1 444 0 23 0 0 0 chr5 1856673 1856696 -201228836 + AT_rich Low_complexity Low_complexity 1 23 0 201 74 0 0 chr5 1859812 1859839 -201225693 + (CA)n Simple_repeat Simple_repeat 1 27 0 2145 129 7 3 chr5 1860906 1861208 -201224324 + AluSx SINE Alu 3 305 -7 2587 53 0 0 chr5 1862969 1863270 -201222262 - AluY SINE Alu -10 301 1 223 347 0 49 chr5 1863347 1863491 -201222041 + L2 LINE L2 3125 3261 -52 3557 103 2 6 chr5 1864511 1865024 -201220508 + MER9 LTR ERVK 1 511 0 2523 69 0 13 chr5 1865578 1865883 -201219649 - AluY SINE Alu -10 301 1 1351 165 116 15 chr5 1868354 1868621 -201216911 - AluJb SINE Alu -12 300 7 1642 316 88 28 chr5 1868789 1870023 -201215509 + L1MEc LINE L1 32 1340 -5056 364 245 109 27 chr5 1870074 1870221 -201215311 + L1MEc LINE L1 2723 2881 -3334 8162 38 13 0 chr5 1870980 1871974 -201213558 + LTR13 LTR ERVK 1 1007 0 192 40 0 0 chr5 1872352 1872377 -201213155 + (CAAAA)n Simple_repeat Simple_repeat 4 28 0 547 147 69 17 chr5 1872478 1872594 -201212938 + Tigger7 DNA MER2_type 2345 2466 -21 2385 78 6 34 chr5 1872637 1872958 -201212574 + AluSx SINE Alu 1 312 0 1503 204 10 19 chr5 1877026 1877340 -201208192 - AluJo SINE Alu -1 311 1 225 288 38 23 chr5 1877411 1877543 -201207989 - L1M1 LINE L1 -476 5828 5695 249 299 26 0 chr5 1878051 1878128 -201207404 + L2 LINE L2 3235 3313 0 564 343 64 20 chr5 1878673 1878924 -201206608 + MIR SINE MIR 1 262 0 25 31 0 0 chr5 1880682 1880714 -201204818 + GC_rich Low_complexity Low_complexity 1 32 0 200 35 35 0 chr5 1881655 1881684 -201203848 + (GAA)n Simple_repeat Simple_repeat 2 31 0 451 216 105 26 chr5 1882436 1882589 -201202943 + MER58C DNA MER1_type 48 212 -3 893 157 43 16 chr5 1883157 1883342 -201202190 - AluJo SINE Alu -8 304 115 418 322 65 0 chr5 1889943 1890142 -201195390 - Charlie5 DNA MER1_type -35 2577 2366 360 228 22 11 chr5 1891180 1891272 -201194260 - L1MC4a LINE L1 -1038 6770 6678 380 217 46 53 chr5 1894345 1894497 -201191035 + MER20 DNA MER1_type 6 156 -63 1086 186 85 80 chr5 1895312 1895689 -201189843 - MLT1B LTR MaLR -11 379 1 391 309 42 13 chr5 1897450 1897686 -201187846 - L1MEc LINE L1 -4590 1973 1731 2275 81 3 3 chr5 1897725 1898022 -201187510 + AluY SINE Alu 1 297 -14 502 307 49 0 chr5 1898072 1898235 -201187297 + MER58C DNA MER1_type 27 197 -18 288 281 102 15 chr5 1898251 1898454 -201187078 - L1MEc LINE L1 -4790 1592 1271 486 319 76 34 chr5 1898531 1898794 -201186738 - L1MEc LINE L1 -5250 1313 1040 426 283 104 0 chr5 1898859 1899110 -201186422 + MER33 DNA MER1_type 4 280 -44 820 170 78 0 chr5 1899111 1899264 -201186268 + AluJb SINE Alu 136 300 -12 3524 153 27 73 chr5 1899608 1900175 -201185357 - LTR39 LTR ERV1 0 783 262 1955 129 0 7 chr5 1900175 1900462 -201185070 - AluSx SINE Alu 0 312 28 3524 153 27 73 chr5 1900462 1900699 -201184833 - LTR39 LTR ERV1 -521 262 16 953 243 104 19 chr5 1903024 1903370 -201182162 + MER21B LTR ERV1 20 335 -528 4829 176 39 14 chr5 1903370 1904251 -201181281 - MER4D LTR ERV1 0 903 1 953 243 104 19 chr5 1904251 1904422 -201181110 + MER21B LTR ERV1 335 672 -191 761 247 148 3 chr5 1904541 1904824 -201180708 - MER68 LTR ERV1 -75 487 164 2003 150 145 18 chr5 1905038 1905418 -201180114 - MSTA LTR MaLR 0 428 1 7613 140 45 44 chr5 1905418 1906936 -201178596 - MSTA-int LTR MaLR 0 1580 61 403 359 122 17 chr5 1906944 1907181 -201178351 - L1MEc LINE L1 -5454 1109 848 21 36 0 0 chr5 1908924 1908952 -201176580 + AT_rich Low_complexity Low_complexity 1 28 0 517 199 140 23 chr5 1910568 1910739 -201174793 + MSTB2 LTR MaLR 229 444 -13 251 213 8 63 chr5 1912218 1912345 -201173187 + G-rich Low_complexity Low_complexity 3 122 0 * 325 291 28 22 chr5 1912286 1912465 -201173067 + (TG)n Simple_repeat Simple_repeat 1 180 0 711 264 58 55 chr5 1912515 1912863 -201172669 + MLT1A1 LTR MaLR 16 364 -1 229 134 79 8 chr5 1916277 1916404 -201169128 + (TG)n Simple_repeat Simple_repeat 1 136 0 241 120 48 60 chr5 1916442 1916609 -201168923 + (GTGTG)n Simple_repeat Simple_repeat 1 165 0 409 148 93 6 chr5 1916719 1916881 -201168651 + (TG)n Simple_repeat Simple_repeat 2 177 0 * 428 139 32 86 chr5 1916763 1917065 -201168467 + (GTGTG)n Simple_repeat Simple_repeat 1 285 0 1983 126 161 34 chr5 1917719 1918051 -201167481 + MSTA LTR MaLR 1 389 -39 2218 81 0 3 chr5 1918051 1918355 -201167177 + AluSq SINE Alu 1 303 0 1983 126 161 34 chr5 1918355 1918401 -201167131 + MSTA LTR MaLR 389 428 0 9896 133 9 41 chr5 1918403 1920033 -201165499 + MSTA-int LTR MaLR 3 1580 0 753 123 227 7 chr5 1920033 1920187 -201165345 + MSTA LTR MaLR 1 188 -240 196 141 47 12 chr5 1921743 1921828 -201163704 + (GGCTG)n Simple_repeat Simple_repeat 4 91 0 295 263 34 0 chr5 1921856 1921974 -201163558 + (GGCTG)n Simple_repeat Simple_repeat 1 122 0 309 300 80 33 chr5 1922181 1922331 -201163201 - L1MEc LINE L1 -5367 1029 873 469 283 104 0 chr5 1922396 1922647 -201162885 + MER33 DNA MER1_type 4 280 -44 862 170 78 0 chr5 1922648 1922801 -201162731 + AluJb SINE Alu 136 300 -12 2864 176 19 30 chr5 1923145 1923712 -201161820 - LTR39 LTR ERV1 0 783 223 2115 118 0 3 chr5 1923712 1924025 -201161507 - AluSx SINE Alu 0 312 1 693 194 0 0 chr5 1924765 1924925 -201160607 + (CA)n Simple_repeat Simple_repeat 1 160 0 304 212 153 0 chr5 1925536 1925621 -201159911 + L2 LINE L2 3172 3269 -3 2372 74 0 0 chr5 1925980 1926279 -201159253 - AluY SINE Alu -12 299 1 290 234 76 10 chr5 1926388 1926567 -201158965 - MSTC LTR MaLR -208 188 1 367 316 102 62 chr5 1926594 1927068 -201158464 - L1M4c LINE L1 -1202 1541 945 550 326 23 19 chr5 1927109 1927367 -201158165 - L1M4 LINE L1 -2010 4136 3878 183 243 0 0 chr5 1927466 1927503 -201158029 + MIR SINE MIR 108 144 -118 184 176 0 0 chr5 1930683 1930717 -201154815 + MIR SINE MIR 109 142 -120 505 223 196 42 chr5 1932607 1932966 -201152566 - MLT1F1 LTR MaLR -93 474 47 456 288 58 28 chr5 1933055 1933401 -201152131 - MLT1F1 LTR MaLR -166 376 27 185 319 67 8 chr5 1936809 1936928 -201148604 - MIR SINE MIR -29 233 108 1251 307 55 21 chr5 1937271 1937835 -201147697 - L1MD3 LINE L1 -8 7987 7405 1421 187 8 0 chr5 1937839 1938106 -201147426 - AluJb SINE Alu -4 308 40 1804 249 113 0 chr5 1938106 1938608 -201146924 - L1MD3 LINE L1 -736 7259 6701 24 0 0 0 chr5 1938638 1938662 -201146870 + AT_rich Low_complexity Low_complexity 1 24 0 412 362 83 24 chr5 1939018 1939441 -201146091 + L1MEd LINE L1 499 946 -5173 379 295 113 58 chr5 1939517 1939931 -201145601 + L1MEd LINE L1 960 1581 -909 394 255 13 27 chr5 1939931 1940080 -201145452 + L1MA10 LINE L1 6188 6334 0 336 345 20 34 chr5 1940094 1940242 -201145290 + L1MEc LINE L1 1034 1142 -5063 448 369 104 33 chr5 1940332 1940725 -201144807 + L1MEc LINE L1 1370 1790 -4606 1160 306 137 27 chr5 1941130 1941993 -201143539 + L1MEc LINE L1 2211 3220 -2995 2390 70 0 0 chr5 1941993 1942291 -201143241 + AluY SINE Alu 1 298 -13 1160 306 137 27 chr5 1942291 1942638 -201142894 + L1MEc LINE L1 3220 3527 -2688 * 4522 175 12 3 chr5 1942632 1943530 -201142002 + L1PA14 LINE L1 4474 5379 -767 2808 62 3 0 chr5 1943510 1943884 -201141648 + L1PA8 LINE L1 5797 6171 -1 * 5617 95 2 5 chr5 1943880 1944692 -201140840 + L1PA14 LINE L1 5352 6161 0 1525 284 123 26 chr5 1944730 1944783 -201140749 + L1MEc LINE L1 3506 3552 -2663 1965 125 0 7 chr5 1944783 1945086 -201140446 + AluSc SINE Alu 1 301 0 1525 284 123 26 chr5 1945086 1945876 -201139656 + L1MEc LINE L1 3552 4432 -1783 1796 212 73 9 chr5 1945894 1946001 -201139531 + L1M3 LINE L1 5363 5462 -721 252 0 0 0 chr5 1946001 1946029 -201139503 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1796 212 73 9 chr5 1946029 1946345 -201139187 + L1M3 LINE L1 5462 5813 -370 267 286 0 0 chr5 1946347 1946410 -201139122 + L1ME LINE L1 5748 5810 -354 270 286 0 0 chr5 1946415 1946478 -201139054 + L1ME LINE L1 5748 5810 -354 227 333 0 0 chr5 1946483 1946546 -201138986 + L1ME LINE L1 5748 5810 -354 282 286 0 0 chr5 1946551 1946614 -201138918 + L1ME LINE L1 5748 5810 -354 263 302 0 0 chr5 1946619 1946682 -201138850 + L1ME LINE L1 5745 5807 -359 306 242 0 0 chr5 1946687 1946753 -201138779 + L1M3 LINE L1 5748 5813 -370 306 242 0 0 chr5 1946755 1946821 -201138711 + L1M2 LINE L1 5748 5813 -478 279 254 0 0 chr5 1946823 1946886 -201138646 + L1M4 LINE L1 5748 5810 -368 244 302 0 0 chr5 1946891 1946954 -201138578 + L1ME LINE L1 5748 5810 -354 295 258 0 0 chr5 1946959 1947025 -201138507 + L1M2 LINE L1 5748 5813 -478 281 286 0 0 chr5 1947027 1947090 -201138442 + L1ME LINE L1 5745 5807 -359 268 286 0 0 chr5 1947163 1947226 -201138306 + L1ME LINE L1 5748 5810 -354 268 286 0 0 chr5 1947231 1947294 -201138238 + L1ME LINE L1 5748 5810 -354 268 286 0 0 chr5 1947299 1947362 -201138170 + L1ME LINE L1 5748 5810 -354 285 270 0 0 chr5 1947367 1947430 -201138102 + L1ME LINE L1 5748 5810 -354 2199 189 33 2 chr5 1947435 1947858 -201137674 + L1MB3 LINE L1 5748 6183 0 2394 256 133 5 chr5 1949026 1949773 -201135759 - L1MA4 LINE L1 0 6300 5459 672 200 0 0 chr5 1950360 1950520 -201135012 + (CA)n Simple_repeat Simple_repeat 1 160 0 302 212 153 0 chr5 1951131 1951216 -201134316 + L2 LINE L2 3172 3269 -3 842 55 47 12 chr5 1954945 1955289 -201130243 + (TG)n Simple_repeat Simple_repeat 1 356 0 327 276 108 67 chr5 1955375 1955720 -201129812 - L1ME LINE L1 -5175 1241 975 716 301 120 33 chr5 1956038 1956767 -201128765 + L1ME3A LINE L1 1020 1770 -4445 441 311 80 51 chr5 1956803 1957262 -201128270 + L1ME3A LINE L1 1819 2361 -3854 3741 108 8 4 chr5 1957262 1957771 -201127761 - MER9 LTR ERVK 0 511 1 441 311 80 51 chr5 1957771 1957843 -201127689 + L1ME3A LINE L1 2361 2429 -3786 1784 42 0 0 chr5 1958000 1958214 -201127318 - LTR14B LTR ERVK -394 214 1 987 281 75 28 chr5 1958218 1958684 -201126848 + L1ME3A LINE L1 3347 3834 -2381 * 1666 194 8 8 chr5 1958667 1959044 -201126488 + L1ME3A LINE L1 4339 4715 -1500 759 127 22 0 chr5 1959042 1959176 -201126356 - L1 LINE L1 -1369 4777 4641 * 774 184 7 15 chr5 1959176 1959425 -201126107 + GA-rich Low_complexity Low_complexity 1 247 0 669 219 97 7 chr5 1959425 1959580 -201125952 - MER93b LTR ERV1 -203 170 2 1253 302 119 11 chr5 1959631 1960194 -201125338 + L1ME3A LINE L1 5328 5951 -284 25 31 0 0 chr5 1960378 1960410 -201125122 + AT_rich Low_complexity Low_complexity 1 32 0 2122 103 3 10 chr5 1960413 1960546 -201124986 + AluY SINE Alu 1 133 -178 2045 130 0 16 chr5 1960546 1960861 -201124671 + AluSg SINE Alu 1 310 0 2122 103 3 10 chr5 1960861 1961028 -201124504 + AluY SINE Alu 133 299 -12 718 252 34 17 chr5 1961975 1962213 -201123319 + L1M4 LINE L1 2360 2601 -3545 1179 54 0 0 chr5 1962218 1962365 -201123167 + AluY SINE Alu 158 304 -7 2199 77 0 13 chr5 1962439 1962737 -201122795 - AluY SINE Alu -17 294 1 26 0 0 0 chr5 1963676 1963702 -201121830 + AT_rich Low_complexity Low_complexity 1 26 0 2485 46 10 0 chr5 1964545 1964848 -201120684 + AluY SINE Alu 1 306 -5 285 191 38 30 chr5 1965419 1965550 -201119982 + GA-rich Low_complexity Low_complexity 5 136 0 639 171 26 0 chr5 1965662 1965779 -201119753 - MER45A DNA AcHobo 0 178 59 243 293 0 13 chr5 1965858 1965933 -201119599 + (TG)n Simple_repeat Simple_repeat 1 74 0 2012 136 0 7 chr5 1967313 1967622 -201117910 + AluSx SINE Alu 1 307 -5 607 356 99 55 chr5 1967649 1968162 -201117370 + L1ME4a LINE L1 5304 5846 -275 2526 227 94 21 chr5 1968162 1968835 -201116697 + MER72 LTR ERV1 1 722 0 607 356 99 55 chr5 1968835 1968899 -201116633 + L1ME4a LINE L1 5846 5906 -215 259 221 96 19 chr5 1968926 1969030 -201116502 + L1ME4a LINE L1 6009 6120 -1 187 114 45 0 chr5 1969588 1969632 -201115900 + GA-rich Low_complexity Low_complexity 3 48 0 338 303 9 9 chr5 1971232 1971341 -201114191 + Charlie7 DNA MER1_type 335 443 -2169 2031 98 7 11 chr5 1972521 1972833 -201112699 + AluSx SINE Alu 1 311 0 2101 87 6 81 chr5 1974021 1974356 -201111176 + AluSx SINE Alu 1 310 -2 336 24 0 0 chr5 1975630 1975671 -201109861 + (TG)n Simple_repeat Simple_repeat 1 41 0 23 0 0 0 chr5 1976319 1976342 -201109190 + GC_rich Low_complexity Low_complexity 1 23 0 21 82 0 0 chr5 1976377 1976426 -201109106 + GC_rich Low_complexity Low_complexity 1 49 0 238 161 16 65 chr5 1977968 1978030 -201107502 + L1MB8 LINE L1 6120 6178 0 24 32 0 0 chr5 1980158 1980189 -201105343 + GC_rich Low_complexity Low_complexity 1 31 0 22 106 0 0 chr5 1980253 1980338 -201105194 + GC_rich Low_complexity Low_complexity 1 85 0 21 36 0 0 chr5 1980391 1980419 -201105113 + GC_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr5 1980443 1980474 -201105058 + GC_rich Low_complexity Low_complexity 1 31 0 192 40 0 0 chr5 1980517 1980542 -201104990 + (CGGG)n Simple_repeat Simple_repeat 2 26 0 27 29 0 0 chr5 1980650 1980684 -201104848 + GC_rich Low_complexity Low_complexity 1 34 0 513 244 0 0 chr5 1989385 1989545 -201095987 + (TG)n Simple_repeat Simple_repeat 1 160 0 323 333 68 93 chr5 1993889 1994303 -201091229 - HAL1 LINE L1 -1076 1431 1029 2210 110 0 0 chr5 1994303 1994612 -201090920 - AluSx SINE Alu -3 309 1 323 333 68 93 chr5 1994612 1994668 -201090864 - HAL1 LINE L1 -1478 1029 973 196 141 47 12 chr5 1997397 1997482 -201088050 + (GGCTG)n Simple_repeat Simple_repeat 4 91 0 295 263 34 0 chr5 1997510 1997628 -201087904 + (GGCTG)n Simple_repeat Simple_repeat 1 122 0 221 312 29 22 chr5 2001969 2002103 -201083429 + MIR SINE MIR 80 211 -51 212 218 18 77 chr5 2002326 2002496 -201083036 + (CCCTG)n Simple_repeat Simple_repeat 3 162 0 * 417 298 0 41 chr5 2002372 2002635 -201082897 + C-rich Low_complexity Low_complexity 1 252 0 252 274 107 20 chr5 2003327 2003524 -201082008 + MLT1D LTR MaLR 33 246 -259 414 271 80 69 chr5 2006045 2006307 -201079225 + L1ME LINE L1 674 938 -5181 186 385 33 16 chr5 2006911 2007033 -201078499 + L2 LINE L2 3148 3271 -1 235 214 0 0 chr5 2009142 2009198 -201076334 + (TG)n Simple_repeat Simple_repeat 1 56 0 1909 162 14 0 chr5 2009310 2009607 -201075925 - AluSx SINE Alu -11 301 1 2283 291 78 61 chr5 2009657 2011414 -201074118 + L1ME LINE L1 3397 5183 -946 762 200 113 0 chr5 2011416 2011611 -201073921 - Tigger1 DNA MER2_type 0 2418 2202 737 180 6 25 chr5 2011592 2011753 -201073779 - Tigger1 DNA MER2_type -2255 163 6 * 532 195 144 8 chr5 2011912 2012030 -201073502 + AluJo SINE Alu 1 134 -178 1092 207 23 80 chr5 2012043 2012430 -201073102 + L1ME LINE L1 5296 5660 -489 407 296 122 38 chr5 2013142 2013464 -201072068 - L1ME LINE L1 -536 5634 5272 2190 104 3 29 chr5 2013596 2013905 -201071627 - AluY SINE Alu -5 306 6 26 0 0 0 chr5 2013913 2013939 -201071593 + AT_rich Low_complexity Low_complexity 1 26 0 * 11956 212 29 18 chr5 2013928 2014783 -201070749 - L1PB1 LINE L1 0 6867 6023 207 0 0 0 chr5 2014783 2014806 -201070726 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1835 160 3 3 chr5 2014806 2015082 -201070450 - AluSx SINE Alu -32 280 5 11956 212 29 18 chr5 2015082 2017904 -201067628 - L1PB1 LINE L1 -844 6023 3086 6123 54 15 15 chr5 2017904 2018649 -201066883 + SVA Other Other 642 1386 0 11956 212 29 18 chr5 2018649 2020651 -201064881 - L1PB1 LINE L1 -3781 3086 1109 754 226 17 6 chr5 2020654 2020831 -201064701 - L1PB1 LINE L1 -6679 184 6 25 0 0 0 chr5 2021602 2021627 -201063905 + AT_rich Low_complexity Low_complexity 1 25 0 300 257 29 0 chr5 2021693 2021798 -201063734 + (TG)n Simple_repeat Simple_repeat 2 109 0 1464 228 3 10 chr5 2021913 2022211 -201063321 - AluJo SINE Alu -16 296 1 1307 256 57 44 chr5 2022916 2023580 -201061952 + L1ME LINE L1 4796 5479 -687 621 175 0 44 chr5 2023580 2023717 -201061815 + FLAM_C SINE Alu 3 133 0 1307 256 57 44 chr5 2023717 2023921 -201061611 + L1ME LINE L1 5479 5679 -487 2035 182 8 3 chr5 2023933 2024313 -201061219 - MLT1B LTR MaLR -8 382 1 708 209 41 0 chr5 2024688 2024860 -201060672 - L1PBa LINE L1 -6679 184 6 326 332 89 52 chr5 2025278 2025661 -201059871 - L1M4 LINE L1 -1128 5018 4622 257 275 22 0 chr5 2027299 2027390 -201058142 + (TG)n Simple_repeat Simple_repeat 2 94 0 1607 199 3 10 chr5 2027510 2027811 -201057721 - AluJo SINE Alu -13 299 1 281 263 46 72 chr5 2028533 2028685 -201056847 + L1ME LINE L1 4798 4945 -1201 195 400 9 0 chr5 2030152 2030262 -201055270 + L2 LINE L2 3145 3255 -17 188 402 51 8 chr5 2030373 2030490 -201055042 + L3b LINE CR1 1455 1576 -7 2272 85 0 69 chr5 2030722 2031040 -201054492 - AluSx SINE Alu -16 296 1 950 82 48 0 chr5 2033030 2033176 -201052356 - MER41A LTR ERV1 0 554 402 32 0 0 0 chr5 2035566 2035598 -201049934 + GC_rich Low_complexity Low_complexity 1 32 0 782 265 49 48 chr5 2038956 2039332 -201046200 - MLT1B LTR MaLR -12 378 1 208 277 45 28 chr5 2043115 2043292 -201042240 + (GGCTG)n Simple_repeat Simple_repeat 1 180 0 197 290 29 0 chr5 2047632 2047701 -201037831 + MIR SINE MIR 81 151 -57 26 0 0 0 chr5 2048413 2048439 -201037093 + GC_rich Low_complexity Low_complexity 1 26 0 277 229 0 13 chr5 2048693 2048772 -201036760 + L1ME LINE L1 5606 5681 -483 830 222 28 37 chr5 2048773 2048989 -201036543 + L1ME LINE L1 5466 5679 -487 1965 183 13 3 chr5 2049001 2049379 -201036153 - MLT1B LTR MaLR -8 382 1 248 234 0 0 chr5 2050442 2050506 -201035026 + (CA)n Simple_repeat Simple_repeat 1 64 0 1726 193 30 0 chr5 2050993 2051289 -201034243 - AluJb SINE Alu -7 305 1 401 343 78 50 chr5 2051382 2051703 -201033829 - L1MC4a LINE L1 -1892 5916 5587 329 296 111 29 chr5 2051750 2051993 -201033539 - L1MC4a LINE L1 -646 5520 5258 660 313 114 65 chr5 2051997 2052655 -201032877 - L1MC4a LINE L1 -897 5249 4560 333 299 103 58 chr5 2053217 2053441 -201032091 - L1ME4a LINE L1 -22 6597 6364 767 232 22 5 chr5 2054573 2054758 -201030774 - MLT1A2 LTR MaLR 0 374 187 543 256 56 32 chr5 2054758 2055008 -201030524 - MLT1A1 LTR MaLR -91 274 19 303 28 0 0 chr5 2055322 2055358 -201030174 + (TG)n Simple_repeat Simple_repeat 2 37 0 1978 88 11 4 chr5 2055378 2055641 -201029891 + AluY SINE Alu 33 297 -14 1147 135 12 0 chr5 2055641 2055811 -201029721 + AluSg/x SINE Alu 134 305 -7 186 308 48 19 chr5 2056571 2056675 -201028857 + MIR SINE MIR 75 181 -81 955 307 102 17 chr5 2057138 2058206 -201027326 - L1ME4a LINE L1 -285 6383 5222 2284 233 29 42 chr5 2058564 2058899 -201026633 - L1ME4a LINE L1 -3939 2707 2369 1572 194 32 7 chr5 2058899 2059183 -201026349 - AluJo SINE Alu -21 291 1 2284 233 29 42 chr5 2059183 2059911 -201025621 - L1ME4a LINE L1 -4277 2369 1570 644 178 0 0 chr5 2059925 2060026 -201025506 - Tigger7 DNA MER2_type -6 2481 2381 * 1264 195 22 0 chr5 2060024 2060255 -201025277 - Tigger7 DNA MER2_type -497 236 1 2116 246 53 26 chr5 2060255 2060991 -201024541 - L1ME4a LINE L1 -4971 1571 816 2153 96 0 69 chr5 2061286 2061620 -201023912 - AluY SINE Alu 0 311 1 235 211 60 0 chr5 2062969 2063042 -201022490 - MIR SINE MIR -73 135 76 2055 181 37 37 chr5 2064836 2065268 -201020264 - MSTB1 LTR MaLR 0 432 1 2206 248 25 28 chr5 2065833 2065854 -201019678 - L1M4c LINE L1 -4237 2409 2389 1282 226 28 14 chr5 2065854 2066141 -201019391 - AluJo SINE Alu -11 291 1 2206 248 25 28 chr5 2066141 2066867 -201018665 - L1M4c LINE L1 -4257 2389 1570 637 178 0 0 chr5 2066881 2066982 -201018550 - Tigger7 DNA MER2_type -6 2485 2385 * 1276 204 4 0 chr5 2066980 2067215 -201018317 - Tigger7 DNA MER2_type -497 236 1 2129 251 47 23 chr5 2067215 2067953 -201017579 - L1M4c LINE L1 -4971 1571 816 1183 152 0 0 chr5 2068251 2068442 -201017090 - AluY SINE Alu -2 309 119 297 0 0 0 chr5 2068442 2068475 -201017057 + (T)n Simple_repeat Simple_repeat 1 33 0 1090 69 0 0 chr5 2068478 2068609 -201016923 - AluY SINE Alu -180 131 1 245 188 47 31 chr5 2069970 2070034 -201015498 - MIR SINE MIR -67 141 77 2000 188 37 37 chr5 2071829 2072261 -201013271 - MSTB1 LTR MaLR 0 432 1 975 324 100 26 chr5 2072922 2074059 -201011473 + L1MEd LINE L1 90 1253 -4866 2091 92 0 3 chr5 2074092 2074376 -201011156 - AluY SINE Alu -28 283 1 2684 167 5 16 chr5 2075692 2076123 -201009409 - MSTB LTR MaLR 0 426 1 5001 175 29 32 chr5 2076123 2077099 -201008433 - MSTB-int LTR MaLR 0 1651 679 430 217 46 53 chr5 2078181 2078333 -201007199 + MER20 DNA MER1_type 6 156 -63 8087 119 101 103 chr5 2080343 2082043 -201003489 - pTR5 LTR ERV1 0 2438 742 262 302 129 18 chr5 2082252 2082477 -201003055 - L1MC5 LINE L1 -54 7907 7658 1148 264 39 35 chr5 2082741 2082843 -201002689 - L1M4 LINE L1 -2627 3519 3419 2055 123 0 19 chr5 2082843 2083159 -201002373 - AluSg SINE Alu 0 310 1 1148 264 39 35 chr5 2083159 2083575 -201001957 - L1M4 LINE L1 -2727 3419 2999 853 264 50 48 chr5 2085671 2086047 -200999485 - MLT1B LTR MaLR -12 378 1 207 284 45 23 chr5 2089830 2090006 -200995526 + (GGCTG)n Simple_repeat Simple_repeat 1 180 0 206 290 29 0 chr5 2094286 2094355 -200991177 + MIR SINE MIR 81 151 -57 279 264 0 66 chr5 2094656 2094777 -200990755 + C-rich Low_complexity Low_complexity 4 116 0 363 246 29 51 chr5 2094796 2094971 -200990561 + C-rich Low_complexity Low_complexity 5 175 0 338 274 102 15 chr5 2095654 2095851 -200989681 + MLT1D LTR MaLR 33 246 -259 357 298 78 67 chr5 2097997 2098252 -200987280 + L1ME LINE L1 674 931 -5188 182 385 33 16 chr5 2098864 2098986 -200986546 + L2 LINE L2 3148 3271 -1 235 214 0 0 chr5 2101185 2101241 -200984291 + (TG)n Simple_repeat Simple_repeat 1 56 0 1848 166 13 0 chr5 2101353 2101654 -200983878 - AluSx SINE Alu -7 305 1 2638 291 77 61 chr5 2101704 2103463 -200982069 + L1ME LINE L1 3397 5183 -946 827 203 102 0 chr5 2103465 2103662 -200981870 - Tigger1 DNA MER2_type 0 2418 2202 776 183 14 0 chr5 2103660 2103802 -200981730 - Tigger1 DNA MER2_type -2269 149 6 * 204 146 24 0 chr5 2103900 2103941 -200981591 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 518 188 145 8 chr5 2103966 2104083 -200981449 + AluJo SINE Alu 2 134 -178 1197 229 27 53 chr5 2104096 2104471 -200981061 + L1ME LINE L1 5296 5660 -489 2003 100 7 32 chr5 2105633 2105942 -200979590 - AluY SINE Alu -5 306 6 11765 182 30 15 chr5 2105965 2106823 -200978709 - L1PB1 LINE L1 0 6867 6023 1705 163 4 3 chr5 2106823 2107126 -200978406 - AluSx SINE Alu -32 280 5 11765 182 30 15 chr5 2107126 2111922 -200973610 - L1PB1 LINE L1 -844 6023 1109 822 220 11 0 chr5 2111925 2112102 -200973430 - L1PB1 LINE L1 -6679 184 6 279 273 31 8 chr5 2112933 2113061 -200972471 + (TG)n Simple_repeat Simple_repeat 2 132 0 1308 214 0 84 chr5 2113176 2113499 -200972033 - AluJo SINE Alu -6 296 1 1317 262 56 43 chr5 2114204 2114866 -200970666 + L1ME LINE L1 4798 5479 -687 675 175 0 44 chr5 2114866 2115003 -200970529 + FLAM_C SINE Alu 3 133 0 1317 262 56 43 chr5 2115003 2115207 -200970325 + L1ME LINE L1 5479 5679 -487 2089 186 10 5 chr5 2115211 2115599 -200969933 - MLT1B LTR MaLR 0 390 1 234 250 0 0 chr5 2116664 2116728 -200968804 + (CA)n Simple_repeat Simple_repeat 1 64 0 1544 198 31 0 chr5 2117217 2117505 -200968027 - AluJb SINE Alu -15 297 1 233 330 28 50 chr5 2117616 2117834 -200967698 - L1MC/D LINE L1 -1911 5897 5685 344 296 111 29 chr5 2117966 2118209 -200967323 - L1MC/D LINE L1 -646 5520 5258 619 342 117 38 chr5 2118213 2118769 -200966763 - L1MC/D LINE L1 -897 5249 4650 2588 157 7 25 chr5 2120121 2120555 -200964977 - MSTB LTR MaLR 0 426 1 8003 180 20 10 chr5 2120555 2121979 -200963553 - MSTB-int LTR MaLR 0 1651 214 1611 148 120 68 chr5 2121979 2122405 -200963127 - LTR7 LTR ERV1 -2 448 1 2447 100 45 35 chr5 2122405 2123000 -200962532 - HERVH LTR ERV1 0 7713 5600 1283 176 60 0 chr5 2123001 2123234 -200962298 - HERVH LTR ERV1 -2564 5149 4903 5840 174 15 1 chr5 2123336 2124338 -200961194 - MSTA-int LTR MaLR -635 1016 1 310 200 15 0 chr5 2124338 2124403 -200961129 - MSTA LTR MaLR 0 428 363 278 279 97 45 chr5 2124501 2124748 -200960784 + L1MEc LINE L1 1442 1701 -4695 453 321 79 54 chr5 2124781 2125061 -200960471 + L1MEc LINE L1 2544 2830 -3385 1070 251 29 57 chr5 2125075 2125586 -200959946 - L1MEc LINE L1 -4897 1499 1003 513 239 65 0 chr5 2125646 2125801 -200959731 - L1MEc LINE L1 -5497 899 735 301 269 97 37 chr5 2125802 2125936 -200959596 + L1MEc LINE L1 1314 1455 -4941 4835 172 62 2 chr5 2125972 2127775 -200957757 - L1PB4 LINE L1 -7 6149 4245 1960 144 32 32 chr5 2127775 2128121 -200957411 + THE1B LTR MaLR 1 346 -18 3742 169 35 1 chr5 2128126 2128835 -200956697 - L1PB4 LINE L1 -1897 4249 3517 213 222 0 0 chr5 2129459 2129522 -200956010 + (CA)n Simple_repeat Simple_repeat 2 64 0 798 318 97 17 chr5 2130264 2131128 -200954404 - L1ME3A LINE L1 -219 6345 5426 506 275 148 41 chr5 2131486 2131670 -200953862 - MLT1C LTR MaLR -47 420 257 925 265 132 9 chr5 2131670 2131995 -200953537 - MLT1A1 LTR MaLR 0 365 1 506 275 148 41 chr5 2131995 2132148 -200953384 - MLT1C LTR MaLR -210 257 47 290 181 166 111 chr5 2136073 2136398 -200949134 + L1M3e LINE L1 1430 1772 -5258 392 238 8 0 chr5 2145669 2145795 -200939737 + (TGGA)n Simple_repeat Simple_repeat 4 130 0 373 260 6 6 chr5 2146742 2146919 -200938613 + (TG)n Simple_repeat Simple_repeat 1 177 0 289 264 0 0 chr5 2146934 2147055 -200938477 + (TG)n Simple_repeat Simple_repeat 1 121 0 383 292 136 30 chr5 2149275 2149511 -200936021 + L1M4 LINE L1 2 262 -6280 1423 263 114 8 chr5 2149584 2150112 -200935420 + L1M4 LINE L1 3754 4337 -2307 441 276 47 75 chr5 2150642 2150856 -200934676 + L1M4 LINE L1 5604 5811 -833 367 286 7 21 chr5 2150959 2151099 -200934433 - L1ME3A LINE L1 -1447 5093 4956 262 322 52 2 chr5 2151099 2151264 -200934268 + L1M4 LINE L1 1720 2329 -4316 336 216 45 23 chr5 2153135 2153223 -200932309 - MER91C DNA MER1_type -19 121 32 279 247 32 21 chr5 2154319 2154412 -200931120 + (TCCA)n Simple_repeat Simple_repeat 1 94 0 194 303 139 41 chr5 2154395 2154517 -200931015 - L2 LINE L2 0 3313 3180 * 246 250 147 26 chr5 2154644 2154760 -200930772 - L2 LINE L2 -277 3036 2907 208 301 108 0 chr5 2154902 2154995 -200930537 - L2 LINE L2 -738 2576 2474 294 190 51 0 chr5 2155383 2155462 -200930070 - LTR50 LTR ERVL -2 793 711 256 175 16 0 chr5 2155586 2155649 -200929883 - LTR50 LTR ERVL -277 518 455 316 292 10 36 chr5 2155776 2156084 -200929448 - L1MCa LINE L1 -4727 1699 1400 * 3811 115 52 7 chr5 2156062 2157190 -200928342 - L1PBa LINE L1 -4940 1923 595 236 219 14 55 chr5 2157622 2157695 -200927837 - L1MCa LINE L1 -5954 898 829 2172 118 7 0 chr5 2157779 2158084 -200927448 + AluSx SINE Alu 1 307 -5 722 294 106 6 chr5 2158645 2158975 -200926557 - MLT1C LTR MaLR 0 467 105 2646 260 87 42 chr5 2159076 2160716 -200924816 - L1ME3A LINE L1 -1842 4698 2945 1034 198 142 20 chr5 2160716 2161060 -200924472 + MLT1B LTR MaLR 1 386 -4 1043 293 70 15 chr5 2161064 2161825 -200923707 - L1MDa LINE L1 -3591 2949 2149 234 258 174 23 chr5 2163086 2163218 -200922314 - L2 LINE L2 -158 3114 2963 227 229 71 64 chr5 2164104 2164244 -200921288 + HAL1b LINE L1 1195 1335 -13 2359 84 0 0 chr5 2164285 2164583 -200920949 + AluY SINE Alu 1 298 -13 468 255 20 7 chr5 2164591 2164744 -200920788 + L1MEc LINE L1 37 191 -6205 778 205 80 0 chr5 2164788 2165012 -200920520 + L1MEc LINE L1 1895 2136 -4260 2008 125 17 0 chr5 2165714 2166001 -200919531 + AluSq SINE Alu 4 295 -18 4422 115 63 9 chr5 2166083 2166736 -200918796 - LTR12 LTR ERV1 0 688 1 603 195 13 6 chr5 2167649 2167808 -200917724 + (TGGA)n Simple_repeat Simple_repeat 3 162 0 254 250 0 0 chr5 2169246 2169298 -200916234 + LTR30 LTR ERV1 1 52 -670 1067 130 140 23 chr5 2169298 2169552 -200915980 + LTR12 LTR ERV1 55 2032 -406 280 227 0 0 chr5 2169553 2169628 -200915904 + LTR30 LTR ERV1 553 627 -95 742 112 26 0 chr5 2169628 2169744 -200915788 + LTR12 LTR ERV1 362 480 -234 387 335 94 12 chr5 2173994 2174164 -200911368 + L1MC4 LINE L1 6459 6642 -1400 862 261 109 7 chr5 2174171 2174474 -200911058 - MER2 DNA MER2_type -8 337 4 653 251 32 58 chr5 2174974 2175070 -200910462 + L1MEc LINE L1 2125 2222 -4174 2262 100 0 3 chr5 2175070 2175369 -200910163 - AluSx SINE Alu -14 298 1 653 251 32 58 chr5 2175369 2175614 -200909918 + L1MEc LINE L1 2222 2457 -3939 * 1309 223 45 16 chr5 2175611 2176038 -200909494 + L1ME1 LINE L1 5723 6161 -5 2033 140 3 9 chr5 2176224 2176539 -200908993 + AluSq SINE Alu 1 313 0 29 60 0 0 chr5 2179456 2179506 -200906026 + GC_rich Low_complexity Low_complexity 1 50 0 22 99 0 0 chr5 2179673 2179744 -200905788 + GC_rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chr5 2179969 2179990 -200905542 + GC_rich Low_complexity Low_complexity 1 21 0 2199 68 72 0 chr5 2181215 2181507 -200904025 - AluSp SINE Alu 0 313 1 254 234 54 72 chr5 2185793 2185904 -200899628 + L2 LINE L2 3205 3313 0 1026 135 3 22 chr5 2185907 2186274 -200899258 + (TGGA)n Simple_repeat Simple_repeat 1 360 0 891 187 5 18 chr5 2186286 2186725 -200898807 + (TGGA)n Simple_repeat Simple_repeat 1 433 0 290 336 0 10 chr5 2186825 2186929 -200898603 + (TGGG)n Simple_repeat Simple_repeat 1 103 0 387 312 89 7 chr5 2186931 2187115 -200898417 + MIR SINE MIR 3 200 -62 929 222 0 0 chr5 2187408 2187584 -200897948 + AluJb SINE Alu 136 311 -1 450 214 21 7 chr5 2187598 2187738 -200897794 + GA-rich Low_complexity Low_complexity 1 142 0 562 161 193 6 chr5 2188820 2188981 -200896551 - L1MC2 LINE L1 0 6344 6154 186 276 60 75 chr5 2189630 2189764 -200895768 + L3 LINE CR1 517 648 -929 1123 250 118 53 chr5 2190806 2191314 -200894218 - MLT1F LTR MaLR 0 542 2 2785 100 11 0 chr5 2191345 2191716 -200893816 - THE1C LTR MaLR 0 375 1 272 361 53 34 chr5 2191727 2191945 -200893587 - MIR3 SINE MIR -10 252 30 28 0 0 0 chr5 2192603 2192631 -200892901 + GC_rich Low_complexity Low_complexity 1 28 0 202 213 38 50 chr5 2192689 2192769 -200892763 + (CCCCG)n Simple_repeat Simple_repeat 1 79 0 841 156 13 26 chr5 2192956 2193110 -200892422 + AluJo SINE Alu 30 181 -131 321 304 14 16 chr5 2193390 2193557 -200891975 + L1M4 LINE L1 4260 4424 -1722 1138 248 42 121 chr5 2193580 2194456 -200891076 - L1M4 LINE L1 -2585 3561 2755 230 279 243 29 chr5 2199116 2199252 -200886280 - MIR3 SINE MIR -26 182 18 197 211 19 0 chr5 2199886 2199938 -200885594 + (TAGA)n Simple_repeat Simple_repeat 3 55 0 2208 92 0 3 chr5 2200276 2200569 -200884963 + AluSc SINE Alu 1 292 -17 1906 154 0 22 chr5 2200578 2200897 -200884635 + AluJb SINE Alu 1 312 0 238 297 55 0 chr5 2202061 2202152 -200883380 + MER5A DNA MER1_type 14 109 -80 1983 96 17 7 chr5 2203878 2204171 -200881361 + AluY SINE Alu 1 296 -15 265 208 49 87 chr5 2205497 2205680 -200879852 + (CATCC)n Simple_repeat Simple_repeat 1 176 0 320 291 36 0 chr5 2209736 2209846 -200875686 + MIR SINE MIR 38 151 -111 180 111 0 0 chr5 2211032 2211059 -200874473 + (TG)n Simple_repeat Simple_repeat 2 28 0 210 37 0 0 chr5 2214282 2214309 -200871223 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 347 250 56 12 chr5 2215732 2215912 -200869620 + L1MCa LINE L1 1690 1969 -4564 1604 88 22 9 chr5 2215971 2216198 -200869334 - MER30 DNA MER1_type 0 230 1 207 0 0 0 chr5 2216987 2217010 -200868522 + (CAA)n Simple_repeat Simple_repeat 2 24 0 241 202 147 9 chr5 2217551 2217660 -200867872 - L1MB8 LINE L1 -77 6101 5978 317 309 47 0 chr5 2218520 2218669 -200866863 + L1ME LINE L1 167 322 -5883 254 296 142 12 chr5 2219073 2219242 -200866290 + L1ME LINE L1 810 1000 -5396 541 231 54 51 chr5 2219411 2219671 -200865861 + MER4C LTR ERV1 275 683 -16 694 230 32 8 chr5 2219713 2219965 -200865567 + L1ME LINE L1 2788 3045 -3170 1739 133 158 142 chr5 2219965 2220689 -200864843 - LTR12 LTR ERV1 -133 2017 54 261 176 20 0 chr5 2220689 2220740 -200864792 - LTR30 LTR ERV1 -670 52 1 3492 257 79 19 chr5 2220741 2222284 -200863248 + L1ME LINE L1 3043 4677 -1538 279 304 0 10 chr5 2222464 2222566 -200862966 - MIR SINE MIR -72 136 36 4720 166 41 8 chr5 2224515 2225311 -200860221 - L1PA16 LINE L1 -9 6157 5298 2341 63 0 7 chr5 2225311 2225611 -200859921 - AluY SINE Alu -13 298 1 4720 166 41 8 chr5 2225611 2226124 -200859408 - L1PA16 LINE L1 -868 5298 4803 297 226 0 0 chr5 2227958 2228020 -200857512 - MLT1D LTR MaLR 0 505 444 245 195 57 98 chr5 2228137 2228260 -200857272 - MLT1D LTR MaLR -293 212 95 222 275 71 58 chr5 2229661 2229804 -200855728 - MIR SINE MIR -67 141 17 1068 178 32 9 chr5 2230372 2230591 -200854941 - MSTB LTR MaLR 0 426 203 1073 143 56 79 chr5 2230956 2231037 -200854495 - MSTB LTR MaLR -165 261 180 2251 99 0 10 chr5 2231037 2231339 -200854193 - AluSx SINE Alu -13 299 1 1073 143 56 79 chr5 2231339 2231523 -200854009 - MSTB LTR MaLR -246 180 2 384 271 6 41 chr5 2233188 2233358 -200852174 + (TG)n Simple_repeat Simple_repeat 1 164 0 298 224 40 0 chr5 2234138 2234214 -200851318 + G-rich Low_complexity Low_complexity 3 81 0 1736 229 53 28 chr5 2239317 2239846 -200845686 - MER6A DNA MER2_type -63 542 1 246 238 83 24 chr5 2239914 2239998 -200845534 + L1ME LINE L1 5340 5428 -807 237 274 27 0 chr5 2240142 2240215 -200845317 + L1ME LINE L1 5451 5525 -714 818 179 87 6 chr5 2242025 2242198 -200843334 - AluJo SINE Alu -10 302 116 247 316 155 0 chr5 2243938 2244093 -200841439 + MLT1E LTR MaLR 398 576 -17 1470 123 4 48 chr5 2245333 2245601 -200839931 - HERVH LTR ERV1 -2970 4743 4488 3028 116 6 2 chr5 2245603 2246095 -200839437 - HERVH LTR ERV1 -3720 3993 3500 715 182 20 0 chr5 2246094 2246242 -200839290 - HERVH LTR ERV1 -4423 3290 3140 * 14661 113 25 23 chr5 2246236 2249523 -200836009 - HERVH LTR ERV1 -4726 2987 1 1621 144 114 74 chr5 2249525 2249956 -200835576 - LTR7 LTR ERV1 -2 448 1 1161 157 19 0 chr5 2249956 2250172 -200835360 - MSTA-int LTR MaLR -1431 220 1 289 114 0 0 chr5 2250181 2250225 -200835307 - MSTA LTR MaLR -9 419 376 635 320 59 69 chr5 2250227 2250618 -200834914 + L1MDa LINE L1 1600 1986 -4554 834 152 26 26 chr5 2250762 2250993 -200834539 - HERVH LTR ERV1 -7481 232 2 1568 146 114 74 chr5 2250997 2251428 -200834104 - LTR7 LTR ERV1 -2 448 1 1161 157 19 0 chr5 2251428 2251644 -200833888 - MSTA-int LTR MaLR -1431 220 1 270 122 0 0 chr5 2251653 2251694 -200833838 - MSTA LTR MaLR -9 419 379 771 335 83 76 chr5 2251698 2252405 -200833127 + L1MDa LINE L1 1600 3166 -3374 984 236 31 64 chr5 2252409 2252922 -200832610 - L1MEc LINE L1 -4899 1497 1002 462 235 85 0 chr5 2252980 2253133 -200832399 - L1MEc LINE L1 -5496 900 735 4463 172 56 2 chr5 2253304 2255120 -200830412 - L1PB4 LINE L1 -7 6149 4246 1797 147 32 32 chr5 2255121 2255467 -200830065 + THE1B LTR MaLR 1 346 -18 3538 169 35 1 chr5 2255472 2256181 -200829351 - L1PB4 LINE L1 -1897 4249 3517 414 296 0 0 chr5 2256842 2257182 -200828350 + (CA)n Simple_repeat Simple_repeat 1 340 0 427 245 49 120 chr5 2258019 2258409 -200827123 + MLT1C LTR MaLR 15 383 -7 192 61 20 61 chr5 2260428 2260477 -200825055 + (CGGGG)n Simple_repeat Simple_repeat 3 49 0 25 31 0 0 chr5 2260585 2260617 -200824915 + GC_rich Low_complexity Low_complexity 1 32 0 708 309 102 16 chr5 2264879 2265534 -200819998 - L1ME LINE L1 -427 5737 5032 308 280 197 21 chr5 2265892 2266077 -200819455 - MLT1C LTR MaLR -47 420 269 1006 259 132 9 chr5 2266077 2266402 -200819130 - MLT1A1 LTR MaLR 0 365 1 308 280 197 21 chr5 2266402 2266571 -200818961 - MLT1C LTR MaLR -198 269 25 535 245 62 26 chr5 2267154 2267427 -200818105 + pTR5 LTR ERV1 1060 1342 -1096 3074 135 77 151 chr5 2267441 2268183 -200817349 + LTR12 LTR ERV1 2 688 0 316 325 129 35 chr5 2272563 2272849 -200812683 - HAL1 LINE L1 -720 1787 1475 190 366 138 0 chr5 2273064 2273187 -200812345 + L2 LINE L2 3098 3237 -76 305 278 0 22 chr5 2276077 2276348 -200809184 + (TG)n Simple_repeat Simple_repeat 1 265 0 232 260 23 79 chr5 2277579 2277756 -200807776 + (CACCG)n Simple_repeat Simple_repeat 3 169 0 371 338 134 13 chr5 2284177 2284491 -200801041 - L1ME LINE L1 -411 5755 5404 1631 266 90 26 chr5 2285146 2285864 -200799668 - L1ME LINE L1 -756 5390 4661 214 260 26 13 chr5 2287008 2287085 -200798447 + G-rich Low_complexity Low_complexity 4 81 0 225 0 0 0 chr5 2292742 2292767 -200792765 + (TA)n Simple_repeat Simple_repeat 1 25 0 279 283 81 0 chr5 2293426 2293574 -200791958 + L1MDa LINE L1 1841 2040 -4548 341 316 95 49 chr5 2293884 2294004 -200791528 + L1MDa LINE L1 1094 1207 -5323 2634 39 0 3 chr5 2294004 2294316 -200791216 + AluY SINE Alu 1 311 0 341 316 95 49 chr5 2294316 2294499 -200791033 + L1MDa LINE L1 1207 1411 -5119 281 294 9 0 chr5 2294918 2295027 -200790505 + L1MDa LINE L1 3755 3864 -2676 339 340 14 0 chr5 2295406 2295547 -200789985 + L1MDa LINE L1 3892 4034 -2506 475 313 37 0 chr5 2295649 2295783 -200789749 - MIR SINE MIR -12 250 112 1080 270 111 39 chr5 2295813 2296706 -200788826 + L1MDa LINE L1 4124 5080 -1460 721 301 78 19 chr5 2296807 2297279 -200788253 + L1MDa LINE L1 5295 5794 -746 378 306 39 63 chr5 2297545 2297599 -200787933 + L1M4c LINE L1 998 1052 -5332 2106 114 10 0 chr5 2297599 2297896 -200787636 - AluSx SINE Alu -12 300 1 378 306 39 63 chr5 2297896 2298256 -200787276 + L1M4c LINE L1 1052 1402 -4982 306 87 0 0 chr5 2298496 2298542 -200786990 + (CA)n Simple_repeat Simple_repeat 1 46 0 438 224 5 68 chr5 2298564 2298756 -200786776 + (CA)n Simple_repeat Simple_repeat 1 180 0 254 114 114 36 chr5 2298676 2298843 -200786689 + (CACAG)n Simple_repeat Simple_repeat 1 180 0 * 394 139 0 64 chr5 2298847 2299020 -200786512 + (CA)n Simple_repeat Simple_repeat 1 162 0 397 320 106 69 chr5 2299757 2300266 -200785266 - L1M4 LINE L1 -2786 3360 2833 1736 229 53 28 chr5 2305406 2305935 -200779597 - MER6A DNA MER2_type -63 542 1 246 238 83 24 chr5 2306003 2306087 -200779445 + L1ME LINE L1 5271 5359 -807 237 274 27 0 chr5 2306231 2306304 -200779228 + L1ME LINE L1 5382 5456 -708 818 179 87 6 chr5 2308118 2308291 -200777241 - AluJo SINE Alu -10 302 116 247 316 155 0 chr5 2310182 2310337 -200775195 + MLT1E LTR MaLR 398 576 -17 182 244 0 26 chr5 2313920 2313998 -200771534 + (CATA)n Simple_repeat Simple_repeat 3 78 0 2138 129 3 0 chr5 2314503 2314814 -200770718 - AluSx SINE Alu 0 312 1 397 279 41 0 chr5 2315225 2315372 -200770160 + MSTD LTR MaLR 1 153 -243 908 192 60 34 chr5 2315513 2315747 -200769785 + MSTD LTR MaLR 157 396 0 1269 123 5 0 chr5 2316271 2316458 -200769074 + AluSg/x SINE Alu 124 311 -1 475 254 58 5 chr5 2316466 2316655 -200768877 + L1M4 LINE L1 5132 5330 -816 343 288 136 30 chr5 2322163 2322399 -200763133 + L1M4 LINE L1 2 262 -6280 2407 276 83 17 chr5 2322468 2322997 -200762535 + L1M4 LINE L1 3754 4247 -2397 1627 168 24 30 chr5 2322997 2323295 -200762237 - AluJo SINE Alu -16 296 1 2407 276 83 17 chr5 2323295 2323752 -200761780 + L1M4 LINE L1 4247 4805 -1839 760 199 39 57 chr5 2323787 2324112 -200761420 + MLT1B LTR MaLR 21 337 -130 310 297 119 0 chr5 2324331 2324449 -200761083 + MER58B DNA MER1_type 210 341 0 2070 131 0 0 chr5 2327758 2328055 -200757477 + AluSx SINE Alu 1 297 -15 266 298 92 0 chr5 2328663 2328794 -200756738 - MIR SINE MIR -10 252 110 219 231 87 10 chr5 2329231 2329335 -200756197 - MIR SINE MIR -132 130 19 337 318 67 6 chr5 2329988 2330134 -200755398 - MIR SINE MIR -4 258 105 2146 175 107 5 chr5 2330935 2331375 -200754157 + MER31A LTR ERV1 1 485 0 1142 144 0 0 chr5 2331941 2332114 -200753418 - AluSg/x SINE Alu -6 304 132 677 87 77 29 chr5 2332332 2332436 -200753096 - AluSq/x SINE Alu -204 109 1 621 255 84 56 chr5 2332475 2332832 -200752700 + L1MDa LINE L1 20 386 -6154 196 77 51 0 chr5 2332869 2332908 -200752624 + (CA)n Simple_repeat Simple_repeat 1 41 0 333 0 0 0 chr5 2332999 2333036 -200752496 + (CA)n Simple_repeat Simple_repeat 1 37 0 1703 232 92 20 chr5 2333232 2334402 -200751130 + L1MDa LINE L1 1014 2098 -4442 2116 115 13 0 chr5 2334402 2334706 -200750826 + AluSq SINE Alu 3 310 -3 1703 232 92 20 chr5 2334706 2335172 -200750360 + L1MDa LINE L1 2098 3290 -3250 1094 74 0 4 chr5 2335172 2335387 -200750145 + AluY SINE Alu 1 302 -9 1143 223 67 5 chr5 2335389 2335779 -200749753 + L1MDa LINE L1 3282 3695 -2845 2027 191 57 17 chr5 2335784 2336164 -200749368 + LTR26 LTR ERV1 9 452 -151 2186 86 17 7 chr5 2336164 2336454 -200749078 + AluSx SINE Alu 1 293 -19 2027 191 57 17 chr5 2336454 2336613 -200748919 + LTR26 LTR ERV1 452 603 0 456 332 58 8 chr5 2336626 2337006 -200748526 + L1MDa LINE L1 3715 4113 -2427 207 273 23 30 chr5 2338870 2339002 -200746530 + (TG)n Simple_repeat Simple_repeat 1 131 0 754 167 8 8 chr5 2542637 2542763 -200542769 + MER49 LTR ERV1 10 135 -788 1516 194 77 119 chr5 2542763 2543344 -200542188 - LTR1B LTR ERV1 0 826 284 249 278 159 20 chr5 2546372 2546523 -200539009 - LTR16B LTR ERVL -4 460 289 603 229 13 0 chr5 2546531 2546769 -200538763 + GA-rich Low_complexity Low_complexity 1 241 0 250 318 122 0 chr5 2547525 2547632 -200537900 + L2 LINE L2 3153 3272 0 580 318 66 3 chr5 2548131 2548417 -200537115 + L1ME3A LINE L1 5548 5851 -319 331 295 0 0 chr5 2549699 2549794 -200535738 + (CA)n Simple_repeat Simple_repeat 2 96 0 411 261 0 0 chr5 2550990 2551401 -200534131 + (TG)n Simple_repeat Simple_repeat 1 411 0 237 237 136 0 chr5 2552175 2552234 -200533298 + L2 LINE L2 3204 3270 -2 196 188 31 0 chr5 2553666 2553730 -200531802 + (TG)n Simple_repeat Simple_repeat 1 66 0 1211 265 131 23 chr5 2554052 2554479 -200531053 + MLT1E LTR MaLR 121 593 0 2070 120 0 3 chr5 2554690 2554998 -200530534 + AluSq SINE Alu 1 307 -6 628 174 14 28 chr5 2555175 2555488 -200530044 + GA-rich Low_complexity Low_complexity 1 308 0 2715 171 37 70 chr5 2556457 2557325 -200528207 - L1MCa LINE L1 -3981 2445 1332 3209 64 5 0 chr5 2557350 2557758 -200527774 - L1PA7 LINE L1 -4 6150 5741 437 311 14 0 chr5 2557819 2557967 -200527565 + Charlie2 DNA MER1_type 2670 2819 -43 2095 90 28 3 chr5 2557973 2558262 -200527270 + AluSc SINE Alu 1 296 -13 2339 123 2 73 chr5 2558723 2559121 -200526411 - L1PA13 LINE L1 -289 5874 5505 1337 148 3 67 chr5 2559763 2560094 -200525438 - AluSx SINE Alu 0 312 3 345 251 11 11 chr5 2561083 2561262 -200524270 + (CA)n Simple_repeat Simple_repeat 1 179 0 340 366 6 0 chr5 2561335 2561551 -200523981 + (CA)n Simple_repeat Simple_repeat 1 217 0 2259 84 3 0 chr5 2561853 2562150 -200523382 + AluSp SINE Alu 1 298 -15 266 268 14 0 chr5 2562151 2562222 -200523310 - MER53 DNA DNA -117 72 1 1546 228 56 18 chr5 2562387 2562834 -200522698 - MLT1C LTR MaLR 0 467 4 2202 93 6 10 chr5 2563637 2563949 -200521583 + AluY SINE Alu 1 311 0 183 204 0 0 chr5 2565808 2565852 -200519680 + (TG)n Simple_repeat Simple_repeat 1 44 0 225 277 59 10 chr5 2565913 2566014 -200519518 + MER88 LTR ERVL 79 184 -280 * 257 337 24 12 chr5 2565925 2566094 -200519438 - MER74B LTR ERVL -74 548 378 236 254 17 0 chr5 2566108 2566167 -200519365 - MER74A LTR ERVL -293 265 206 394 203 0 0 chr5 2566395 2566469 -200519063 + AluJ SINE Alu 49 122 -180 258 171 26 13 chr5 2566469 2566545 -200518987 + (TA)n Simple_repeat Simple_repeat 1 77 0 831 199 0 17 chr5 2566546 2566722 -200518810 + AluJ SINE Alu 125 297 -15 373 365 15 0 chr5 2567655 2567813 -200517719 - MIR SINE MIR -62 146 15 395 345 40 17 chr5 2568022 2568196 -200517336 + MER5B DNA MER1_type 1 178 0 23 78 0 0 chr5 2569997 2570048 -200515484 + AT_rich Low_complexity Low_complexity 1 51 0 22 56 0 0 chr5 2570456 2570492 -200515040 + AT_rich Low_complexity Low_complexity 1 36 0 1733 160 17 3 chr5 2570763 2571057 -200514475 - AluJb SINE Alu -14 298 1 1846 114 66 79 chr5 2571940 2572318 -200513214 - THE1C LTR MaLR -2 373 1 1341 215 48 100 chr5 2572957 2573436 -200512096 + MLT1C LTR MaLR 6 459 -8 1206 174 4 17 chr5 2575523 2575764 -200509768 - L1MA3 LINE L1 0 6305 6068 285 350 17 8 chr5 2576548 2576665 -200508867 - MIR3 SINE MIR -53 155 38 245 73 0 24 chr5 2576774 2576815 -200508717 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 10103 29 2 0 chr5 2576815 2578746 -200506786 - L1PA3 LINE L1 -24 6131 4199 438 259 51 0 chr5 2581509 2581667 -200503865 - L1M4 LINE L1 -1638 4508 4343 1286 307 77 10 chr5 2582444 2583147 -200502385 + L1M4 LINE L1 3104 3853 -2293 892 185 70 182 chr5 2583147 2583902 -200501630 + MER4A LTR ERV1 1 870 -2 6174 183 25 70 chr5 2583929 2584810 -200500722 + L1MC1 LINE L1 1 920 -5506 258 32 0 0 chr5 2584810 2584841 -200500691 + (CA)n Simple_repeat Simple_repeat 2 32 0 6174 183 25 70 chr5 2584841 2585315 -200500217 + L1MC1 LINE L1 920 1286 -5140 6898 62 9 2 chr5 2585315 2586481 -200499051 + L1PA7 LINE L1 4979 6150 -4 6174 183 25 70 chr5 2586481 2586611 -200498921 + L1MC1 LINE L1 1286 1420 -5006 5036 227 85 42 chr5 2586596 2587394 -200498138 + L1MC1 LINE L1 1685 2446 -3980 * 291 154 19 0 chr5 2587394 2587446 -200498086 + LTR23 LTR ERV1 306 358 -79 5036 227 85 42 chr5 2587446 2589476 -200496056 + L1MC1 LINE L1 2446 4685 -1741 1738 199 55 19 chr5 2589485 2589902 -200495630 + MSTB1 LTR MaLR 1 432 0 2263 66 3 7 chr5 2589931 2590233 -200495299 + AluY SINE Alu 1 301 -10 388 219 0 0 chr5 2590240 2590304 -200495228 + MLT1D LTR MaLR 125 188 -317 4635 156 66 7 chr5 2590349 2591187 -200494345 + ERVL-B3 LTR ERVL 4871 5757 -7 1784 200 15 151 chr5 2591187 2591800 -200493732 + MLT2B3 LTR ERVL 1 408 -36 4644 197 79 14 chr5 2591800 2592607 -200492925 + L1MC1 LINE L1 4877 5631 -982 2003 124 48 0 chr5 2592607 2592897 -200492635 + AluSq SINE Alu 1 304 -9 4644 197 79 14 chr5 2592897 2593712 -200491820 + L1MC1 LINE L1 5631 6602 -11 554 255 136 53 chr5 2593716 2594034 -200491498 + L1M4 LINE L1 4067 4441 -1705 2272 89 0 0 chr5 2594034 2594340 -200491192 + AluY SINE Alu 1 306 0 554 255 136 53 chr5 2594340 2594506 -200491026 + L1M4 LINE L1 4441 4592 -1554 1441 76 0 0 chr5 2594893 2595065 -200490467 + AluSg/x SINE Alu 124 295 -17 249 262 16 0 chr5 2595505 2595566 -200489966 + MER45 DNA AcHobo 61 122 -56 942 185 75 5 chr5 2600471 2600671 -200484861 + L1MA4A LINE L1 5555 5768 -535 231 164 0 0 chr5 2600671 2600726 -200484806 - LTR66 LTR ERVL -162 448 394 551 131 0 4 chr5 2600768 2600869 -200484663 - L1MC/D LINE L1 -560 5682 5585 289 0 49 0 chr5 2600874 2600915 -200484617 + (TA)n Simple_repeat Simple_repeat 2 44 0 2266 156 78 11 chr5 2600916 2601390 -200484142 + L1MA4A LINE L1 5795 6300 -3 197 279 114 13 chr5 2602626 2602705 -200482827 + L2 LINE L2 3208 3294 -19 2023 122 3 20 chr5 2604061 2604356 -200481176 - AluSx SINE Alu 0 312 23 366 362 7 7 chr5 2604411 2604549 -200480983 + MER5B DNA MER1_type 35 172 -6 203 322 67 0 chr5 2609716 2609806 -200475726 + L2 LINE L2 3172 3267 -5 182 367 20 10 chr5 2609877 2609975 -200475557 - MIR SINE MIR -6 256 158 243 0 0 0 chr5 2610319 2610346 -200475186 + (TA)n Simple_repeat Simple_repeat 2 28 0 2268 65 65 0 chr5 2611988 2612280 -200473252 + AluY SINE Alu 1 311 0 193 311 77 46 chr5 2614039 2614235 -200471297 - L2 LINE L2 -490 2824 2623 429 343 50 15 chr5 2615283 2615624 -200469908 - HERV16 LTR ERVL -1217 4547 4195 697 294 81 15 chr5 2616290 2616623 -200468909 - HERV16 LTR ERVL -3845 1151 797 216 260 0 0 chr5 2616635 2616685 -200468847 + (TG)n Simple_repeat Simple_repeat 2 51 0 3064 145 19 6 chr5 2617939 2618464 -200467068 - L1MA2 LINE L1 0 6304 5773 1376 241 20 0 chr5 2619573 2619921 -200465611 - MLT1A1 LTR MaLR -2 363 9 2350 110 3 0 chr5 2619955 2620256 -200465276 + AluSp SINE Alu 1 302 -11 2213 113 0 0 chr5 2620496 2620789 -200464743 - AluSx SINE Alu -17 295 3 279 263 11 11 chr5 2621777 2621956 -200463576 + (CA)n Simple_repeat Simple_repeat 1 179 0 337 376 0 0 chr5 2622047 2622225 -200463307 + (CA)n Simple_repeat Simple_repeat 2 179 0 341 278 0 6 chr5 2622257 2622437 -200463095 + (CA)n Simple_repeat Simple_repeat 2 180 0 286 269 13 0 chr5 2622478 2622556 -200462976 + (CA)n Simple_repeat Simple_repeat 1 79 0 226 260 16 0 chr5 2622577 2622704 -200462828 + (CA)n Simple_repeat Simple_repeat 1 129 0 518 226 36 48 chr5 2623453 2623621 -200461911 + MER5A DNA MER1_type 2 167 -22 2019 131 35 26 chr5 2625015 2625359 -200460173 + THE1B LTR MaLR 18 364 0 1741 171 0 46 chr5 2625382 2625709 -200459823 + AluSx SINE Alu 1 312 0 4165 116 4 48 chr5 2626333 2627015 -200458517 + L1PA13 LINE L1 5505 6156 -7 2265 108 3 16 chr5 2627151 2627493 -200458039 - AluSq SINE Alu 0 313 1 257 363 80 55 chr5 2628477 2628766 -200456766 - L2 LINE L2 -1 3271 2976 315 332 87 23 chr5 2629007 2629399 -200456133 - L2 LINE L2 -646 2668 2252 491 266 42 60 chr5 2629542 2629876 -200455656 - MLT1D LTR MaLR -177 328 1 358 231 0 0 chr5 2630054 2630132 -200455400 - MLT1K LTR MaLR -61 527 450 281 218 72 4 chr5 2630787 2630876 -200454656 - MLT1J LTR MaLR -288 189 74 1273 173 35 35 chr5 2632449 2632733 -200452799 + L1MA5 LINE L1 6017 6300 0 957 253 104 20 chr5 2632750 2633106 -200452426 + MLT1C LTR MaLR 80 465 -2 239 274 71 12 chr5 2633812 2633896 -200451636 + L2 LINE L2 3185 3273 -40 258 81 0 0 chr5 2639201 2639238 -200446294 + (CA)n Simple_repeat Simple_repeat 2 38 0 2247 117 3 3 chr5 2640467 2640775 -200444757 - AluSx SINE Alu -4 308 1 326 228 89 41 chr5 2642974 2643097 -200442435 + L1ME4a LINE L1 5992 6120 -1 25 31 0 0 chr5 2643584 2643616 -200441916 + AT_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr5 2643649 2643677 -200441855 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr5 2644167 2644212 -200441320 + AT_rich Low_complexity Low_complexity 1 45 0 219 217 22 0 chr5 2645284 2645330 -200440202 - L2 LINE L2 -16 3256 3210 2058 95 32 14 chr5 2645426 2645755 -200439777 + AluSq SINE Alu 5 313 0 24 0 0 0 chr5 2645845 2645869 -200439663 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr5 2648769 2648791 -200436741 + AT_rich Low_complexity Low_complexity 1 22 0 675 160 0 0 chr5 2649297 2649403 -200436129 - AluSc SINE Alu -6 303 198 1425 94 6 0 chr5 2649403 2649584 -200435948 + AluSc SINE Alu 9 190 -119 233 282 0 24 chr5 2652630 2652715 -200432817 + GA-rich Low_complexity Low_complexity 2 84 0 21 0 0 0 chr5 2652816 2652837 -200432695 + AT_rich Low_complexity Low_complexity 1 21 0 222 91 0 0 chr5 2655519 2655552 -200429980 + (TC)n Simple_repeat Simple_repeat 2 34 0 200 209 23 0 chr5 2658968 2659011 -200426521 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 638 132 48 12 chr5 2659018 2659185 -200426347 + (TAGA)n Simple_repeat Simple_repeat 4 176 0 490 133 31 8 chr5 2659212 2659340 -200426192 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 3016 136 21 14 chr5 2659369 2659885 -200425647 - HSMAR2 DNA Mariner -2 1300 781 247 265 34 17 chr5 2659936 2660053 -200425479 + L1MEd LINE L1 990 1108 -5011 2439 174 31 0 chr5 2660983 2661398 -200424134 - MSTA LTR MaLR 0 428 1 229 294 11 0 chr5 2662194 2662286 -200423246 + L1MEd LINE L1 2833 2925 -3204 25 65 0 0 chr5 2662417 2662463 -200423069 + AT_rich Low_complexity Low_complexity 1 46 0 316 281 81 25 chr5 2662701 2662861 -200422671 - MIR SINE MIR 0 262 94 231 179 26 13 chr5 2662955 2663033 -200422499 + (TA)n Simple_repeat Simple_repeat 1 79 0 316 325 68 16 chr5 2663074 2663323 -200422209 + L1M4 LINE L1 5069 5330 -816 1479 255 3 3 chr5 2663548 2663905 -200421627 + L1PB4 LINE L1 5795 6151 -5 378 228 104 41 chr5 2663955 2664223 -200421309 - L1M4 LINE L1 -3057 3089 2805 * 875 288 18 0 chr5 2664220 2664498 -200421034 - L1ME2 LINE L1 -187 5977 5695 578 214 132 31 chr5 2664614 2664835 -200420697 - Charlie2 DNA MER1_type -106 2756 2490 1926 146 7 7 chr5 2664835 2665136 -200420396 + AluSx SINE Alu 1 301 -11 578 214 132 31 chr5 2665136 2665241 -200420291 - Charlie2 DNA MER1_type -372 2490 2397 410 279 268 4 chr5 2665247 2665516 -200420016 - Charlie2b DNA MER1_type -1748 1034 695 219 167 0 0 chr5 2665547 2665589 -200419943 + (TAGA)n Simple_repeat Simple_repeat 3 44 0 1441 206 62 62 chr5 2665698 2665907 -200419625 - MLT1A2 LTR MaLR 0 374 163 896 167 0 0 chr5 2665907 2666039 -200419493 - FLAM_C SINE Alu -1 132 1 1441 206 62 62 chr5 2666039 2666203 -200419329 - MLT1A2 LTR MaLR -210 164 1 298 282 130 0 chr5 2666207 2666338 -200419194 - Charlie2b DNA MER1_type -2207 575 428 356 360 20 0 chr5 2666369 2666519 -200419013 - Charlie2b DNA MER1_type -2544 318 166 533 232 34 11 chr5 2666520 2666697 -200418835 + L1MEc LINE L1 2168 2348 -4048 292 217 0 0 chr5 2666699 2666759 -200418773 + AluJ/monomer SINE Alu 241 300 -2 737 259 102 32 chr5 2666773 2667147 -200418385 + L1MEc LINE L1 2303 2702 -3513 348 189 90 115 chr5 2667152 2667199 -200418333 - MSTC LTR MaLR -242 123 76 2133 110 7 7 chr5 2667199 2667490 -200418042 - AluSp SINE Alu -22 291 1 348 189 90 115 chr5 2667490 2667564 -200417968 - MSTC LTR MaLR -289 76 5 21 36 0 0 chr5 2669404 2669432 -200416100 + AT_rich Low_complexity Low_complexity 1 28 0 1704 194 42 35 chr5 2669653 2670082 -200415450 - L1 LINE L1 -816 5330 4899 255 252 55 84 chr5 2670082 2670320 -200415212 + MLT1H LTR MaLR 221 451 -98 448 326 57 6 chr5 2670822 2670997 -200414535 + MIR SINE MIR 43 226 -36 1867 144 92 23 chr5 2672493 2672841 -200412691 + THE1C LTR MaLR 1 372 -3 689 164 4 0 chr5 2673360 2673592 -200411940 + (CA)n Simple_repeat Simple_repeat 1 233 0 270 293 140 25 chr5 2673648 2673805 -200411727 - MIR SINE MIR -10 252 78 23 33 0 0 chr5 2675240 2675270 -200410262 + AT_rich Low_complexity Low_complexity 1 30 0 1810 231 25 104 chr5 2675878 2676598 -200408934 + L1ME2 LINE L1 4615 5277 -869 815 212 0 0 chr5 2676607 2676753 -200408779 - FRAM SINE Alu -21 155 10 2229 246 60 29 chr5 2676771 2677259 -200408273 + L1ME2 LINE L1 5282 5804 -360 2849 104 8 8 chr5 2677259 2677634 -200407898 + THE1C LTR MaLR 1 375 0 2229 246 60 29 chr5 2677634 2677916 -200407616 + L1ME2 LINE L1 5804 6076 -88 194 250 40 53 chr5 2681611 2681687 -200403845 + L2 LINE L2 1634 1708 -1606 1578 183 3 13 chr5 2681718 2682045 -200403487 + AluJo SINE Alu 1 312 0 1209 140 5 5 chr5 2682521 2682714 -200402818 - L1PA13 LINE L1 -5 6158 5966 1464 117 2 14 chr5 2682714 2682988 -200402544 + L1PA12 LINE L1 5754 6017 -114 664 315 247 3 chr5 2683025 2683660 -200401872 + L2 LINE L2 2186 2975 -339 353 201 141 67 chr5 2684444 2684593 -200400939 + L1MC4 LINE L1 7688 7847 -195 4774 225 53 39 chr5 2684666 2685231 -200400301 + L1MD1 LINE L1 1136 1692 -4848 1608 174 48 61 chr5 2685231 2685610 -200399922 + MLT1A2 LTR MaLR 1 374 0 4774 225 53 39 chr5 2685610 2686552 -200398980 + L1MD1 LINE L1 1692 2623 -3917 1863 159 6 25 chr5 2686552 2686674 -200398858 + AluSx SINE Alu 1 124 -188 351 0 0 0 chr5 2686674 2686713 -200398819 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1863 159 6 25 chr5 2686713 2686905 -200398627 + AluSx SINE Alu 124 309 -3 4774 225 53 39 chr5 2686905 2687216 -200398316 + L1MD1 LINE L1 2623 2928 -3612 325 167 0 0 chr5 2687237 2687291 -200398241 - LTR16C LTR ERVL -30 461 408 1444 267 17 8 chr5 2687333 2687808 -200397724 + L1MD1 LINE L1 2959 3437 -3103 1400 243 41 10 chr5 2687801 2688002 -200397530 + L1MD1 LINE L1 5964 6157 -405 * 779 191 0 22 chr5 2688002 2688138 -200397394 + FLAM_C SINE Alu 1 133 0 1400 243 41 10 chr5 2688138 2688343 -200397189 + L1MD1 LINE L1 6157 6380 -182 735 164 37 22 chr5 2688351 2688485 -200397047 + FLAM_C SINE Alu 2 137 -6 453 275 35 7 chr5 2688598 2688740 -200396792 + LTR16C LTR ERVL 316 461 -30 2542 219 9 6 chr5 2688929 2689462 -200396070 - MLT1-int LTR MaLR -835 536 2 21 36 0 0 chr5 2689630 2689658 -200395874 + AT_rich Low_complexity Low_complexity 1 28 0 3064 198 18 36 chr5 2689794 2689970 -200395562 + L1MB3 LINE L1 5446 5624 -559 1575 167 16 46 chr5 2689970 2690105 -200395427 + AluJb SINE Alu 1 138 -174 2024 138 7 0 chr5 2690105 2690402 -200395130 + AluSx SINE Alu 3 301 -11 1575 167 16 46 chr5 2690402 2690571 -200394961 + AluJb SINE Alu 138 296 -16 3064 198 18 36 chr5 2690571 2691067 -200394465 + L1MB3 LINE L1 5624 6106 -77 21 36 0 0 chr5 2691311 2691339 -200394193 + AT_rich Low_complexity Low_complexity 1 28 0 414 269 62 24 chr5 2692527 2692735 -200392797 + MER20 DNA MER1_type 1 216 -3 2498 58 0 29 chr5 2692957 2693270 -200392262 - AluY SINE Alu -7 304 1 499 293 80 52 chr5 2693432 2693920 -200391612 - L2 LINE L2 -208 3064 2556 1879 171 3 0 chr5 2694129 2694428 -200391104 - AluJo SINE Alu -12 300 1 210 71 0 0 chr5 2694951 2694979 -200390553 + (TG)n Simple_repeat Simple_repeat 1 28 0 305 275 58 72 chr5 2694981 2695119 -200390413 - L2 LINE L2 0 3272 3137 488 226 80 0 chr5 2696296 2696433 -200389099 - L1ME1 LINE L1 -65 6101 5954 1490 193 51 10 chr5 2696568 2696864 -200388668 - AluJb SINE Alu -4 308 1 2565 169 55 29 chr5 2696972 2697276 -200388256 + MER7C DNA MER2_type 40 366 -2662 2265 83 0 64 chr5 2697276 2697603 -200387929 - AluSq SINE Alu -7 306 1 2565 169 55 29 chr5 2697603 2697847 -200387685 + MER7C DNA MER2_type 366 602 0 21 0 0 0 chr5 2698088 2698109 -200387423 + AT_rich Low_complexity Low_complexity 1 21 0 1495 268 106 19 chr5 2699741 2700356 -200385176 + L1MCa LINE L1 21 688 -5738 1558 215 95 23 chr5 2702789 2702835 -200382697 - MLT2C2 LTR ERVL -1 463 422 285 98 0 0 chr5 2702835 2702876 -200382656 + (CA)n Simple_repeat Simple_repeat 2 42 0 1558 215 95 23 chr5 2702876 2703261 -200382271 - MLT2C2 LTR ERVL -42 422 1 183 80 0 0 chr5 2703463 2703488 -200382044 + (TG)n Simple_repeat Simple_repeat 2 26 0 1981 156 0 13 chr5 2704234 2704548 -200380984 + AluJb SINE Alu 1 310 -2 33 25 0 0 chr5 2704593 2704633 -200380899 + AT_rich Low_complexity Low_complexity 1 40 0 2759 32 0 0 chr5 2705083 2705391 -200380141 - AluY SINE Alu -3 308 1 27 49 0 0 chr5 2706872 2706913 -200378619 + AT_rich Low_complexity Low_complexity 1 41 0 697 259 49 5 chr5 2707279 2707484 -200378048 - MER20 DNA MER1_type -5 214 1 2149 134 3 0 chr5 2708012 2708319 -200377213 + AluSg SINE Alu 1 308 -2 565 301 75 84 chr5 2708468 2709008 -200376524 + L1MC/D LINE L1 5245 5780 -747 24 32 0 0 chr5 2709281 2709312 -200376220 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr5 2710043 2710064 -200375468 + AT_rich Low_complexity Low_complexity 1 21 0 270 136 0 0 chr5 2710211 2710255 -200375277 + (T)n Simple_repeat Simple_repeat 1 44 0 22 56 0 0 chr5 2710542 2710578 -200374954 + AT_rich Low_complexity Low_complexity 1 36 0 180 158 0 0 chr5 2710791 2710829 -200374703 + (TG)n Simple_repeat Simple_repeat 2 39 0 396 0 0 0 chr5 2713106 2713150 -200372382 + (CA)n Simple_repeat Simple_repeat 2 45 0 672 36 0 0 chr5 2716592 2716675 -200368857 + (TC)n Simple_repeat Simple_repeat 2 84 0 2310 42 0 0 chr5 2718888 2719152 -200366380 + AluY SINE Alu 40 303 -8 1950 169 80 3 chr5 2719389 2719762 -200365770 + MER57A LTR ERV1 2 403 0 2144 122 0 3 chr5 2719910 2720205 -200365327 - AluSq SINE Alu -15 298 5 2655 34 7 0 chr5 2720634 2720932 -200364600 - AluY SINE Alu -11 300 1 24 0 0 0 chr5 2720995 2721019 -200364513 + AT_rich Low_complexity Low_complexity 1 24 0 2023 147 0 10 chr5 2721021 2721334 -200364198 + AluSg SINE Alu 1 310 0 1916 138 56 30 chr5 2721354 2721658 -200363874 + AluJb SINE Alu 1 312 0 1032 70 0 0 chr5 2721828 2721957 -200363575 - AluY SINE Alu -6 305 177 1988 137 0 3 chr5 2722756 2723049 -200362483 + AluJo SINE Alu 14 305 -7 2133 148 0 0 chr5 2723076 2723423 -200362109 + AluSq SINE Alu 1 347 0 182 405 0 0 chr5 2723446 2723520 -200362012 - MIR SINE MIR -12 250 177 219 36 0 0 chr5 2725325 2725353 -200360179 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 492 304 170 37 chr5 2725497 2725955 -200359577 - L2 LINE L2 -365 2949 2431 741 143 24 18 chr5 2727644 2727812 -200357720 + G-rich Low_complexity Low_complexity 2 170 0 205 104 0 42 chr5 2727826 2727874 -200357658 + (GGGGA)n Simple_repeat Simple_repeat 4 49 0 1868 159 10 0 chr5 2731915 2732241 -200353291 - AluSx SINE Alu 0 312 1 1367 230 7 3 chr5 2734333 2734637 -200350895 + MLT1A1 LTR MaLR 1 305 -60 214 169 31 0 chr5 2734814 2734879 -200350653 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 391 313 129 16 chr5 2734879 2735189 -200350343 + HAL1 LINE L1 858 1202 -1305 2175 97 40 3 chr5 2735687 2735986 -200349546 - AluY SINE Alu -1 310 1 288 125 18 0 chr5 2737821 2737877 -200347655 - L1PB2 LINE L1 -3 6148 6092 2243 105 10 0 chr5 2737879 2738173 -200347359 - AluSg SINE Alu -11 299 3 1012 227 122 34 chr5 2739641 2740036 -200345496 + MLT1C LTR MaLR 2 390 0 2326 105 0 0 chr5 2740287 2740582 -200344950 - AluSx SINE Alu -17 295 1 2045 128 7 0 chr5 2742210 2742499 -200343033 + AluSx SINE Alu 1 291 -21 211 68 0 68 chr5 2742502 2742546 -200342986 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1736 47 5 0 chr5 2743085 2743299 -200342233 + L1PA4 LINE L1 5940 6154 -1 1570 44 0 0 chr5 2743825 2744008 -200341524 + L1PA5 LINE L1 5964 6146 -8 591 276 116 24 chr5 2744058 2744428 -200341104 - MLT1I LTR MaLR -1 408 5 2161 93 7 0 chr5 2744800 2745089 -200340443 - AluSx SINE Alu -21 291 1 2135 139 0 0 chr5 2745860 2746170 -200339362 - AluSx SINE Alu -1 311 2 964 201 126 57 chr5 2746196 2746529 -200339003 + MLT1A1 LTR MaLR 4 359 -6 1678 122 30 19 chr5 2746530 2746801 -200338731 - L1MB2 LINE L1 -41 6130 5857 7849 214 56 19 chr5 2746805 2748303 -200337229 - L1MB2 LINE L1 -631 5552 3946 2221 106 3 0 chr5 2748303 2748605 -200336927 - AluSp SINE Alu -10 303 1 7849 214 56 19 chr5 2748605 2749401 -200336131 - L1MB2 LINE L1 -2237 3946 3181 246 222 32 0 chr5 2749731 2749794 -200335738 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 633 323 69 41 chr5 2749837 2750227 -200335305 - MLT1I LTR MaLR -2 407 7 379 292 169 64 chr5 2750309 2750730 -200334802 + L1ME LINE L1 5272 5736 -430 1426 178 108 93 chr5 2752739 2752874 -200332658 + MLT2C2 LTR ERVL 1 132 -332 843 120 0 24 chr5 2752874 2752999 -200332533 - FLAM_C SINE Alu -11 122 1 1426 178 108 93 chr5 2752999 2753262 -200332270 + MLT2C2 LTR ERVL 132 405 -59 288 120 0 0 chr5 2753309 2753359 -200332173 + (CA)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chr5 2755246 2755267 -200330265 + AT_rich Low_complexity Low_complexity 1 21 0 799 205 15 19 chr5 2755267 2755472 -200330060 - L1MA9 LINE L1 -37 6275 6072 259 100 60 0 chr5 2755882 2755932 -200329600 - L1MA9 LINE L1 -241 6071 6019 2713 130 17 9 chr5 2757078 2757500 -200328032 - MSTA LTR MaLR 0 428 4 238 184 102 0 chr5 2757571 2757620 -200327912 + L2 LINE L2 3213 3266 -6 26 88 0 0 chr5 2758208 2758276 -200327256 + AT_rich Low_complexity Low_complexity 1 68 0 378 340 48 14 chr5 2759385 2759532 -200326000 - MIR SINE MIR -4 258 107 25 0 0 0 chr5 2760213 2760238 -200325294 + AT_rich Low_complexity Low_complexity 1 25 0 1794 126 48 0 chr5 2760246 2760538 -200324994 + AluSx SINE Alu 1 305 0 1774 244 125 70 chr5 2760610 2761323 -200324209 + MER21B LTR ERV1 1 752 -111 183 80 0 0 chr5 2761339 2761364 -200324168 + (A)n Simple_repeat Simple_repeat 1 25 0 184 373 63 0 chr5 2761478 2761620 -200323912 + MIR SINE MIR 28 178 -84 359 242 0 11 chr5 2761774 2761865 -200323667 - MLT1A2 LTR MaLR -114 276 187 197 139 23 0 chr5 2761874 2761917 -200323615 + GA-rich Low_complexity Low_complexity 1 44 0 369 209 131 69 chr5 2761922 2762083 -200323449 - MLT1A2 LTR MaLR -217 173 3 5914 118 17 1 chr5 2762130 2763333 -200322199 + L1PA13 LINE L1 4961 6158 -5 1985 129 3 0 chr5 2763333 2763643 -200321889 + AluSx SINE Alu 1 311 -1 248 307 64 21 chr5 2764967 2765107 -200320425 - LTR67 LTR ERVL -4 553 408 1768 141 32 0 chr5 2766525 2766809 -200318723 + AluSx SINE Alu 1 293 -19 294 125 0 0 chr5 2766809 2766857 -200318675 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 1103 119 6 0 chr5 2766859 2767035 -200318497 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 200 278 69 0 chr5 2767116 2767188 -200318344 + MIR3 SINE MIR 115 191 -17 213 65 0 0 chr5 2767384 2767415 -200318117 + (CA)n Simple_repeat Simple_repeat 2 32 0 188 297 16 0 chr5 2768205 2768269 -200317263 + MIR SINE MIR 194 258 -4 660 256 61 17 chr5 2769681 2770004 -200315528 + MER31B LTR ERV1 2 661 0 600 244 31 12 chr5 2770722 2770882 -200314650 - L1MD3 LINE L1 -13 7982 7820 681 261 168 28 chr5 2770905 2771106 -200314426 + L1MC4a LINE L1 7299 7555 -253 1727 188 5 72 chr5 2771106 2771520 -200314012 - MLT1B LTR MaLR -4 386 1 681 261 168 28 chr5 2771520 2771609 -200313923 + L1MC4a LINE L1 7555 7630 -178 2215 110 0 0 chr5 2771621 2771922 -200313610 - AluSg SINE Alu -9 301 1 2492 117 14 0 chr5 2772750 2773109 -200312423 + THE1B LTR MaLR 1 364 0 467 290 134 44 chr5 2773155 2773721 -200311811 - L1ME4a LINE L1 -240 5881 5265 2282 76 0 3 chr5 2774033 2774335 -200311197 - AluY SINE Alu -10 301 1 273 57 0 0 chr5 2775969 2776004 -200309528 + (A)n Simple_repeat Simple_repeat 1 35 0 393 241 52 9 chr5 2777928 2778044 -200307488 + L1MC3 LINE L1 7019 7139 -646 2061 220 70 55 chr5 2778078 2778750 -200306782 + L1MD3 LINE L1 7314 7995 0 1500 149 23 62 chr5 2779388 2779696 -200305836 + AluJb SINE Alu 1 296 -16 568 259 202 3 chr5 2780125 2780496 -200305036 + Charlie2 DNA MER1_type 1886 2330 -532 346 239 128 13 chr5 2780542 2780776 -200304756 + Charlie2 DNA MER1_type 2402 2662 -200 3428 35 2 0 chr5 2780863 2781265 -200304267 - L1PA5 LINE L1 -11 6143 5741 437 311 14 0 chr5 2781326 2781474 -200304058 + Charlie2 DNA MER1_type 2670 2819 -43 2095 90 28 3 chr5 2781480 2781769 -200303763 + AluSc SINE Alu 1 296 -13 29 0 0 0 chr5 2784309 2784338 -200301194 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr5 2788086 2788121 -200297411 + AT_rich Low_complexity Low_complexity 1 35 0 239 212 15 0 chr5 2789327 2789393 -200296139 - L1ME4a LINE L1 -12 6109 6043 213 154 0 0 chr5 2789957 2789996 -200295536 + (CA)n Simple_repeat Simple_repeat 1 39 0 673 210 84 0 chr5 2790107 2790274 -200295258 - L1ME4a LINE L1 -501 5663 5483 315 258 107 67 chr5 2790284 2790509 -200295023 + L1MEd LINE L1 861 1094 -5025 618 156 10 15 chr5 2790512 2790718 -200294814 + (TAGA)n Simple_repeat Simple_repeat 1 205 0 203 197 28 28 chr5 2793644 2793715 -200291817 + (TA)n Simple_repeat Simple_repeat 2 72 0 195 167 0 0 chr5 2793716 2793758 -200291774 + (CA)n Simple_repeat Simple_repeat 1 42 0 435 85 37 0 chr5 2793921 2794003 -200291529 + (CA)n Simple_repeat Simple_repeat 1 85 0 371 106 15 0 chr5 2794148 2794214 -200291318 + (CA)n Simple_repeat Simple_repeat 1 67 0 224 188 38 25 chr5 2794306 2794386 -200291146 + (TA)n Simple_repeat Simple_repeat 2 82 0 306 87 0 0 chr5 2794387 2794433 -200291099 + (CA)n Simple_repeat Simple_repeat 1 46 0 3403 144 44 72 chr5 2794445 2795168 -200290364 - Tigger3b DNA MER2_type 0 1231 529 3363 200 2 0 chr5 2795168 2795813 -200289719 - L1P LINE L1 -1632 4514 3869 635 146 45 0 chr5 2795813 2795919 -200289613 + L1PA13 LINE L1 6034 6148 -15 3419 254 28 7 chr5 2795937 2796865 -200288667 + L1M4 LINE L1 4005 4952 -1194 2295 188 120 12 chr5 2797276 2797766 -200287766 - Tigger3b DNA MER2_type -688 543 1 615 278 78 39 chr5 2797772 2798103 -200287429 - MLT2C1 LTR ERVL -51 346 3 1672 217 30 2 chr5 2802225 2802630 -200282902 - L1MC1 LINE L1 -1 6332 5917 263 170 0 0 chr5 2802630 2802677 -200282855 - MLT2B2 LTR ERVL 0 515 469 702 202 0 0 chr5 2802677 2802855 -200282677 + (CA)n Simple_repeat Simple_repeat 1 178 0 474 251 0 0 chr5 2802867 2803030 -200282502 + (CA)n Simple_repeat Simple_repeat 2 164 0 580 241 77 91 chr5 2803074 2803427 -200282105 - MLT2B2 LTR ERVL -65 349 2 873 239 198 6 chr5 2803481 2803795 -200281737 - MLT1A2 LTR MaLR 0 374 1 1552 220 3 3 chr5 2803817 2804131 -200281401 - L1MC1 LINE L1 -479 5854 5541 1677 79 130 58 chr5 2804211 2804488 -200281044 - AluSp SINE Alu -15 298 2 233 227 0 0 chr5 2805512 2805556 -200279976 + (CCA)n Simple_repeat Simple_repeat 3 46 0 571 232 211 0 chr5 2805566 2805760 -200279772 - MIR SINE MIR -18 244 10 959 246 159 36 chr5 2808385 2808825 -200276707 + MLT1D LTR MaLR 5 498 -7 217 289 96 19 chr5 2808829 2808933 -200276599 - MIR SINE MIR -40 222 111 251 232 0 98 chr5 2811014 2811096 -200274436 - MIR SINE MIR -112 150 77 227 261 43 0 chr5 2812036 2812105 -200273427 - L2 LINE L2 -621 2693 2622 2004 208 42 62 chr5 2813431 2813959 -200271573 - LTR9 LTR ERV1 -95 517 1 659 254 23 17 chr5 2813963 2814140 -200271392 - MLT1A1 LTR MaLR -185 180 3 2052 118 0 9 chr5 2814149 2814464 -200271068 - AluSq SINE Alu -1 312 1 272 222 91 30 chr5 2814482 2814581 -200270951 - MER103 DNA DNA -45 121 17 28 0 0 0 chr5 2814733 2814761 -200270771 + AT_rich Low_complexity Low_complexity 1 28 0 403 218 0 73 chr5 2814779 2814889 -200270643 + MER58 DNA MER1_type 2318 2419 -1 3426 251 85 65 chr5 2815395 2816168 -200269364 + L1ME2 LINE L1 2771 3527 -2637 1396 141 45 0 chr5 2816168 2816388 -200269144 + MER30 DNA MER1_type 1 230 0 3426 251 85 65 chr5 2816388 2817217 -200268315 + L1ME2 LINE L1 3527 4338 -1826 2258 86 7 0 chr5 2817217 2817519 -200268013 + AluSg SINE Alu 1 304 -6 3426 251 85 65 chr5 2817519 2819232 -200266300 + L1ME2 LINE L1 4338 6157 -7 477 0 0 0 chr5 2819232 2819285 -200266247 + (CA)n Simple_repeat Simple_repeat 2 54 0 488 268 94 54 chr5 2821027 2821251 -200264281 + MLT1E LTR MaLR 8 240 -353 1770 250 23 69 chr5 2821258 2821909 -200263623 - MER74B LTR ERVL -1 621 1 930 243 55 16 chr5 2821915 2822170 -200263362 + MLT1E LTR MaLR 329 593 0 213 224 35 17 chr5 2822713 2822771 -200262761 + MIR SINE MIR 108 166 -96 630 322 105 10 chr5 2822783 2823174 -200262358 - MER110 LTR ERV1 -1 490 63 1326 287 58 9 chr5 2824212 2824647 -200260885 - MLT1E2 LTR MaLR 0 626 169 1409 251 90 14 chr5 2824647 2825070 -200260462 + MLT1C LTR MaLR 1 455 -12 528 225 94 7 chr5 2825074 2825212 -200260320 - MLT1E2 LTR MaLR -466 160 11 317 217 169 0 chr5 2825227 2825310 -200260222 - MIR SINE MIR -61 201 105 3489 159 10 26 chr5 2827699 2828134 -200257398 + MER50 LTR ERV1 135 559 -175 2361 83 0 3 chr5 2828134 2828446 -200257086 - AluY SINE Alu 0 311 1 3489 159 10 26 chr5 2828446 2828620 -200256912 + MER50 LTR ERV1 559 734 0 1883 131 14 7 chr5 2830500 2830791 -200254741 + AluSx SINE Alu 3 295 -17 552 30 0 0 chr5 2830791 2830857 -200254675 + (GGAA)n Simple_repeat Simple_repeat 2 67 0 624 253 134 35 chr5 2882443 2882922 -200202610 - MER34 LTR ERV1 0 542 17 2033 76 45 24 chr5 2882994 2883282 -200202250 + AluY SINE Alu 17 310 -1 394 264 100 80 chr5 2883358 2883759 -200201773 - MLT1H LTR MaLR -7 542 134 2277 91 3 0 chr5 2884338 2884634 -200200898 + AluY SINE Alu 1 297 -14 221 246 82 27 chr5 2885014 2885124 -200200408 + L2 LINE L2 1722 1837 -1477 1425 282 63 17 chr5 2885218 2886067 -200199465 - L1ME3 LINE L1 -88 6143 5221 553 305 97 2 chr5 2886127 2886259 -200199273 - L1ME3 LINE L1 -1627 4588 4470 594 268 58 10 chr5 2886259 2886464 -200199068 + MER58C DNA MER1_type 1 215 0 553 305 97 2 chr5 2886464 2886797 -200198735 - L1ME3 LINE L1 -1745 4470 4079 310 172 0 0 chr5 2886833 2886891 -200198641 - Alu SINE Alu -3 298 241 717 177 61 0 chr5 2886891 2887038 -200198494 - L1PA16 LINE L1 -45 6121 5966 * 1167 316 18 15 chr5 2887033 2887708 -200197824 - L1ME3 LINE L1 -2162 4053 3377 349 304 84 24 chr5 2887713 2888693 -200196839 - L1ME3 LINE L1 -4027 2369 1254 435 163 0 0 chr5 2888750 2888830 -200196702 + CT-rich Low_complexity Low_complexity 2 81 0 186 43 0 0 chr5 2891816 2891839 -200193693 + (CA)n Simple_repeat Simple_repeat 1 23 0 33 25 0 0 chr5 2893037 2893077 -200192455 + AT_rich Low_complexity Low_complexity 1 40 0 396 292 81 6 chr5 2893899 2894060 -200191472 - MLT1I LTR MaLR -144 265 93 1754 161 137 11 chr5 2894189 2894569 -200190963 + MSTA LTR MaLR 1 428 0 2180 105 10 0 chr5 2895541 2895835 -200189697 - AluSp SINE Alu -16 297 1 2129 99 11 11 chr5 2895835 2896117 -200189415 - AluSx SINE Alu -10 302 21 378 325 113 29 chr5 2897470 2898275 -200187257 - L1M4 LINE L1 -1101 5045 4173 2282 106 7 7 chr5 2899527 2899829 -200185703 - AluSq SINE Alu -11 302 1 259 354 0 0 chr5 2902290 2902389 -200183143 + MIR SINE MIR 140 238 -24 1920 96 44 11 chr5 2902398 2902689 -200182843 + AluY SINE Alu 1 300 0 212 200 20 0 chr5 2903459 2903509 -200182023 + (AATAG)n Simple_repeat Simple_repeat 4 54 0 232 180 73 62 chr5 2903733 2903911 -200181621 + (TG)n Simple_repeat Simple_repeat 1 180 0 461 316 128 47 chr5 2904740 2905308 -200180224 + L1MC4a LINE L1 5025 5634 -755 21 36 0 0 chr5 2905347 2905375 -200180157 + AT_rich Low_complexity Low_complexity 1 28 0 318 335 34 25 chr5 2905446 2905685 -200179847 + L1MC4a LINE L1 5737 5977 -1831 24 32 0 0 chr5 2907414 2907445 -200178087 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr5 2907819 2907839 -200177693 + (T)n Simple_repeat Simple_repeat 1 20 0 1186 220 57 31 chr5 2911625 2912028 -200173504 - MLT1B LTR MaLR -1 373 9 360 197 14 0 chr5 2912351 2912422 -200173110 - MER1B DNA MER1_type -139 158 87 529 200 21 15 chr5 2912834 2912980 -200172552 - MER1B DNA MER1_type -182 115 1 490 312 70 34 chr5 2914437 2914735 -200170797 + MER58B DNA MER1_type 10 318 -23 693 243 101 30 chr5 2914853 2915149 -200170383 - LTR54B LTR ERV1 -2 496 180 189 107 0 0 chr5 2915630 2915658 -200169874 + (CAA)n Simple_repeat Simple_repeat 3 30 0 388 265 5 69 chr5 2916755 2917016 -200168516 + GA-rich Low_complexity Low_complexity 1 244 0 37 99 0 0 chr5 2917236 2917357 -200168175 + AT_rich Low_complexity Low_complexity 1 121 0 664 273 61 63 chr5 2918978 2919120 -200166412 + MLT1C LTR MaLR 43 184 -283 2441 77 0 0 chr5 2919120 2919420 -200166112 + AluY SINE Alu 3 302 -9 664 273 61 63 chr5 2919420 2919687 -200165845 + MLT1C LTR MaLR 184 451 -16 212 371 71 0 chr5 2920759 2920899 -200164633 - MIR SINE MIR -21 241 92 186 43 0 0 chr5 2921266 2921289 -200164243 + (GA)n Simple_repeat Simple_repeat 2 24 0 187 191 128 0 chr5 2922997 2923044 -200162488 + L2 LINE L2 2394 2446 -868 1494 235 37 18 chr5 2923588 2923971 -200161561 + MLT1B LTR MaLR 1 390 0 2325 114 0 9 chr5 2924028 2924343 -200161189 + AluSx SINE Alu 1 312 0 2500 54 0 3 chr5 2925229 2925525 -200160007 - AluY SINE Alu -15 296 2 288 143 0 0 chr5 2925657 2925713 -200159819 + (CCCTAA)n Simple_repeat Simple_repeat 1 56 0 222 62 0 0 chr5 2927983 2928015 -200157517 + (CA)n Simple_repeat Simple_repeat 2 33 0 1069 78 0 48 chr5 2930367 2930533 -200154999 + MER30B DNA MER1_type 23 180 -10 355 244 33 0 chr5 2930855 2930945 -200154587 - MER81 DNA DNA 0 114 22 1309 202 133 22 chr5 2931037 2931452 -200154080 + MLT1C LTR MaLR 7 467 0 1513 118 36 5 chr5 2931893 2932114 -200153418 - MER30 DNA MER1_type 0 230 3 708 145 90 24 chr5 2932466 2932623 -200152909 - MLT2C1 LTR ERVL -40 480 199 22 35 0 0 chr5 2933560 2933589 -200151943 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr5 2933685 2933728 -200151804 + AT_rich Low_complexity Low_complexity 1 43 0 189 0 0 0 chr5 2934859 2934880 -200150652 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 4859 216 33 48 chr5 2935736 2937293 -200148239 + Looper DNA T2_type 1 1534 -24 324 0 0 0 chr5 2937294 2937330 -200148202 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1741 215 146 30 chr5 2937341 2937807 -200147725 - MLT2B1 LTR ERVL 0 520 1 188 200 17 0 chr5 2938176 2938236 -200147296 + GA-rich Low_complexity Low_complexity 2 62 0 360 245 31 10 chr5 2939304 2939402 -200146130 + MER69 DNA AcHobo 41 140 -1086 189 0 0 0 chr5 2939871 2939892 -200145640 + (T)n Simple_repeat Simple_repeat 1 21 0 839 265 71 36 chr5 2940375 2940767 -200144765 + MLT1C LTR MaLR 60 465 -2 4050 116 20 3 chr5 2942391 2942995 -200142537 - L1PA13 LINE L1 -4 6159 5546 21 0 0 0 chr5 2943093 2943114 -200142418 + AT_rich Low_complexity Low_complexity 1 21 0 526 152 0 103 chr5 2943677 2943822 -200141710 + MER96B DNA MER1_type? 238 367 -50 294 300 0 42 chr5 2944604 2944724 -200140808 - L2 LINE L2 -2 3311 3197 2162 139 0 7 chr5 2945015 2945325 -200140207 + AluSx SINE Alu 1 308 -4 306 182 106 15 chr5 2945778 2945844 -200139688 + MIR3 SINE MIR 110 181 -27 707 197 34 11 chr5 2946381 2946559 -200138973 + MER96B DNA MER1_type? 2 183 -234 1608 196 68 46 chr5 2947163 2947616 -200137916 - MER31B LTR ERV1 0 466 4 210 341 57 48 chr5 2948755 2948984 -200136548 - L2 LINE L2 -638 2676 2446 23 0 0 0 chr5 2949056 2949079 -200136453 + AT_rich Low_complexity Low_complexity 1 23 0 540 323 72 26 chr5 2949079 2949494 -200136038 + L1MC/D LINE L1 4160 4593 -1553 433 327 92 58 chr5 2950425 2950926 -200134606 + L1MC/D LINE L1 5307 5824 -1984 26 64 0 0 chr5 2951741 2951788 -200133744 + AT_rich Low_complexity Low_complexity 1 47 0 803 244 117 7 chr5 2951901 2952208 -200133324 - MER2 DNA MER2_type -3 341 1 237 148 140 0 chr5 2952211 2952278 -200133254 + MIR SINE MIR 53 141 -67 22 0 0 0 chr5 2952424 2952446 -200133086 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr5 2952597 2952625 -200132907 + AT_rich Low_complexity Low_complexity 1 28 0 1831 23 5 0 chr5 2953136 2953353 -200132179 - L1PA4 LINE L1 0 6155 5938 202 265 0 0 chr5 2954520 2954569 -200130963 + GA-rich Low_complexity Low_complexity 1 49 0 1178 251 28 3 chr5 2955164 2955527 -200130005 - L1MB1 LINE L1 0 6168 5798 360 258 118 39 chr5 2956481 2956659 -200128873 - L3 LINE CR1 -231 1346 1155 222 216 0 20 chr5 2959371 2959422 -200126110 - L2 LINE L2 -2 3311 3262 320 319 35 0 chr5 2961093 2961209 -200124323 - MIR SINE MIR -108 154 35 255 312 51 13 chr5 2962226 2962383 -200123149 + MER103 DNA DNA 2 164 -2 466 222 31 8 chr5 2962542 2962716 -200122816 + MER61B LTR ERV1 1 105 -320 1412 179 36 11 chr5 2962786 2963065 -200122467 + MER61D LTR ERV1 216 501 0 1864 119 141 28 chr5 2964017 2964344 -200121188 + THE1B LTR MaLR 1 364 0 1654 215 74 17 chr5 2966024 2966442 -200119090 + MLT2B1 LTR ERVL 1 442 -78 1583 287 20 33 chr5 2967810 2968409 -200117123 + L1M2b LINE L1 14 604 -6605 594 241 48 35 chr5 2968607 2968817 -200116715 + L1M2b LINE L1 1685 1881 -5328 3695 210 16 47 chr5 2968953 2970228 -200115304 + L1M2b LINE L1 2162 3396 -3812 806 185 0 0 chr5 2970231 2970377 -200115155 + Tigger1 DNA MER2_type 1 146 -2272 1090 172 5 18 chr5 2970377 2970598 -200114934 + Tigger1 DNA MER2_type 2201 2418 0 9951 193 27 5 chr5 2970601 2972901 -200112631 + L1M2b LINE L1 3406 5757 -1451 864 177 43 22 chr5 2972904 2973136 -200112396 + L1MA5 LINE L1 3972 4208 -3000 573 135 10 0 chr5 2973126 2973230 -200112302 + L1MA5 LINE L1 5753 5857 -1351 * 5087 169 21 24 chr5 2973210 2974785 -200110747 + L1MA5 LINE L1 5789 7357 -5 1383 124 44 26 chr5 2975198 2975424 -200110108 - MER30 DNA MER1_type 0 230 1 2114 146 7 3 chr5 2975784 2976093 -200109439 + AluSx SINE Alu 3 312 0 21 0 0 0 chr5 2978062 2978083 -200107449 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr5 2978167 2978188 -200107344 + AT_rich Low_complexity Low_complexity 1 21 0 634 305 72 90 chr5 2980136 2980958 -200104574 + L1MDa LINE L1 1236 2042 -4498 9340 104 2 3 chr5 2981142 2983301 -200102231 + L1PA8 LINE L1 4014 6172 0 428 266 62 41 chr5 2983438 2983652 -200101880 + L1MDa LINE L1 2537 2760 -3780 866 94 78 0 chr5 2983652 2983780 -200101752 - MER85 DNA T2_type -1 138 1 428 266 62 41 chr5 2983780 2983855 -200101677 + L1MDa LINE L1 2760 2832 -3708 249 296 19 0 chr5 2983864 2983972 -200101560 - L1M4 LINE L1 -3570 2576 2467 406 264 111 0 chr5 2984108 2984316 -200101216 + L1MDa LINE L1 3176 3406 -3134 1466 160 33 4 chr5 2984318 2984593 -200100939 + L1PA16 LINE L1 5869 6151 -15 866 81 8 0 chr5 2984605 2984728 -200100804 - L1PB1 LINE L1 0 6151 6028 3644 256 79 51 chr5 2984817 2987511 -200098021 - L1M4 LINE L1 -554 5866 3030 1737 178 3 0 chr5 2987511 2987797 -200097735 - AluJb SINE Alu -22 290 4 3644 256 79 51 chr5 2987797 2988065 -200097467 - L1M4 LINE L1 -3390 3030 2771 279 173 0 0 chr5 2988089 2988141 -200097391 - L1MB8 LINE L1 -12 6166 6115 1139 154 125 38 chr5 2988142 2988382 -200097150 - Tigger2 DNA MER2_type -173 2545 1 3464 171 75 8 chr5 2988382 2989131 -200096401 - L1MB7 LINE L1 -86 6098 5300 640 251 103 37 chr5 2989098 2989719 -200095813 - L1M4 LINE L1 -3602 2780 2144 * 3719 60 6 2 chr5 2989749 2990217 -200095315 - L1PA5 LINE L1 -7 6147 5678 21 82 0 0 chr5 2990319 2990368 -200095164 + AT_rich Low_complexity Low_complexity 1 49 0 593 294 55 14 chr5 2990430 2990705 -200094827 - L1M4 LINE L1 -4644 1740 1455 2201 120 0 0 chr5 2991449 2991749 -200093783 - AluSx SINE Alu -12 300 1 2086 123 7 13 chr5 2992507 2992808 -200092724 - AluSg SINE Alu -11 299 1 310 243 157 96 chr5 2993585 2993865 -200091667 - MLT1H LTR MaLR -2 547 251 389 231 0 66 chr5 2994180 2994271 -200091261 - L2 LINE L2 0 3313 3229 200 283 71 18 chr5 2995718 2995831 -200089701 - MIR3 SINE MIR -7 201 83 254 230 0 23 chr5 2996043 2996130 -200089402 + (CATA)n Simple_repeat Simple_repeat 2 86 0 451 262 21 35 chr5 2997392 2997533 -200087999 + MLT1I LTR MaLR 247 385 -24 493 273 83 46 chr5 2997712 2998484 -200087048 + L1MEc LINE L1 2131 2893 -3322 358 182 0 0 chr5 2998515 2998570 -200086962 + Tigger5 DNA MER2_type 1 55 -2268 318 173 13 53 chr5 2998539 2998614 -200086918 + Tigger5 DNA MER2_type 2251 2322 -1 * 238 198 40 69 chr5 2998631 2998732 -200086800 + L1MEc LINE L1 2924 3021 -3194 202 303 174 0 chr5 2998732 2998864 -200086668 - MIR SINE MIR -12 250 96 2686 33 0 3 chr5 2998952 2999259 -200086273 + AluY SINE Alu 1 306 -5 596 264 45 80 chr5 2999269 2999841 -200085691 + L1MEc LINE L1 3469 4020 -2195 35 24 0 0 chr5 2999844 2999886 -200085646 + AT_rich Low_complexity Low_complexity 1 42 0 591 245 54 0 chr5 2999927 3000074 -200085458 + MLT1D LTR MaLR 1 155 -350 976 211 18 22 chr5 3000141 3000364 -200085168 + MLT1D LTR MaLR 271 492 -13 1964 133 7 4 chr5 3000822 3001101 -200084431 + AluSq SINE Alu 1 280 -33 267 31 0 0 chr5 3001101 3001133 -200084399 + (CA)n Simple_repeat Simple_repeat 1 32 0 31 0 0 0 chr5 3001774 3001805 -200083727 + AT_rich Low_complexity Low_complexity 1 31 0 220 386 59 5 chr5 3002487 3002689 -200082843 + MIR SINE MIR 22 234 -28 235 225 33 42 chr5 3002740 3002860 -200082672 + (TATATG)n Simple_repeat Simple_repeat 6 124 0 237 268 28 0 chr5 3003076 3003147 -200082385 + CT-rich Low_complexity Low_complexity 3 75 0 2638 189 34 55 chr5 3003244 3003806 -200081726 - MER52A LTR ERV1 0 1755 1206 1286 227 88 65 chr5 3003779 3004268 -200081264 - MER52A LTR ERV1 -304 1349 531 * 307 264 172 0 chr5 3004292 3004379 -200081153 - MER52A LTR ERV1 -671 1084 983 518 219 233 7 chr5 3004396 3004542 -200080990 - MER52A LTR ERV1 -664 1091 913 3620 198 89 28 chr5 3004610 3005563 -200079969 - MER52A LTR ERV1 -658 1097 1 4138 149 17 8 chr5 3007099 3007804 -200077728 + MER50 LTR ERV1 1 711 -23 717 204 0 0 chr5 3008832 3008984 -200076548 + T-rich Low_complexity Low_complexity 1 152 0 2275 115 3 3 chr5 3008988 3009301 -200076231 - AluSq SINE Alu 0 313 1 22 0 0 0 chr5 3010564 3010586 -200074946 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr5 3011735 3011755 -200073777 + (CCCCCT)n Simple_repeat Simple_repeat 2 21 0 641 244 0 0 chr5 3012492 3012668 -200072864 + (CTGGGG)n Simple_repeat Simple_repeat 5 180 0 615 241 0 0 chr5 3012735 3012909 -200072623 + (CTGGGG)n Simple_repeat Simple_repeat 3 176 0 584 258 0 0 chr5 3012929 3013107 -200072425 + (CTGGGG)n Simple_repeat Simple_repeat 3 180 0 569 274 6 0 chr5 3013119 3013471 -200072061 + (CTGGGG)n Simple_repeat Simple_repeat 1 354 0 1979 150 7 0 chr5 3014732 3015038 -200070494 - AluSx SINE Alu -4 308 1 28 61 0 0 chr5 3015785 3015834 -200069698 + AT_rich Low_complexity Low_complexity 1 49 0 1297 214 64 113 chr5 3017447 3017961 -200067571 - MLT1E LTR MaLR -4 589 75 2225 125 0 0 chr5 3018581 3018893 -200066639 - AluSx SINE Alu 0 312 1 284 307 83 43 chr5 3018946 3019200 -200066332 + L1MC/D LINE L1 5476 5739 -382 182 132 53 0 chr5 3019693 3019731 -200065801 + CT-rich Low_complexity Low_complexity 1 40 0 266 176 20 0 chr5 3021053 3021104 -200064428 + LTR30 LTR ERV1 1 52 -670 1253 91 37 118 chr5 3021104 3021368 -200064164 + LTR12 LTR ERV1 57 258 -456 305 291 26 0 chr5 3021368 3021485 -200064047 + LTR30 LTR ERV1 524 643 -79 2526 84 0 0 chr5 3021485 3021807 -200063725 + LTR12 LTR ERV1 377 698 -16 1223 177 101 122 chr5 3021811 3022246 -200063286 + MSTA LTR MaLR 3 428 0 533 249 80 127 chr5 3022943 3023345 -200062187 + MLT1C LTR MaLR 1 464 -3 203 256 0 44 chr5 3025454 3025544 -200059988 + (TA)n Simple_repeat Simple_repeat 2 87 0 213 121 0 0 chr5 3026400 3026433 -200059099 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 495 0 0 0 chr5 3028532 3028587 -200056945 + (TA)n Simple_repeat Simple_repeat 2 56 0 2149 111 0 0 chr5 3028586 3028887 -200056645 - AluSg SINE Alu 0 301 1 28 48 0 0 chr5 3029081 3029123 -200056409 + AT_rich Low_complexity Low_complexity 1 42 0 1673 182 88 45 chr5 3029382 3029849 -200055683 + MLT2B1 LTR ERVL 1 487 -33 1791 214 86 34 chr5 3031878 3032402 -200053130 + L1MB7 LINE L1 5634 6184 0 291 365 58 12 chr5 3032745 3032986 -200052546 + MIR SINE MIR 8 259 -3 264 363 7 15 chr5 3033930 3034065 -200051467 + MIR SINE MIR 84 217 -45 2069 112 22 0 chr5 3035556 3035832 -200049700 + AluSg SINE Alu 13 294 -16 3368 224 35 33 chr5 3036049 3036363 -200049169 - L1MB8 LINE L1 -7 6171 5859 2308 101 7 0 chr5 3036363 3036669 -200048863 - AluSx SINE Alu -2 310 3 3368 224 35 33 chr5 3036669 3037232 -200048300 - L1MB8 LINE L1 -319 5859 5298 1930 192 78 2 chr5 3037232 3037628 -200047904 + MSTB LTR MaLR 1 426 0 3368 224 35 33 chr5 3037628 3038163 -200047369 - L1MB8 LINE L1 -880 5298 4747 2472 71 0 7 chr5 3038163 3038473 -200047059 - AluY SINE Alu -3 308 1 3368 224 35 33 chr5 3038473 3038590 -200046942 - L1MB8 LINE L1 -1431 4747 4632 1852 64 0 0 chr5 3038690 3038943 -200046589 + AluY SINE Alu 67 319 0 32 43 0 0 chr5 3039142 3039188 -200046344 + AT_rich Low_complexity Low_complexity 1 46 0 1544 267 69 18 chr5 3039227 3039833 -200045699 + L1ME2 LINE L1 5291 5927 -237 4683 147 14 13 chr5 3039934 3040710 -200044822 - Tigger1 DNA MER2_type -1519 899 123 1111 128 24 0 chr5 3041355 3041519 -200044013 + AluSp SINE Alu 103 270 -43 276 77 0 0 chr5 3041522 3041561 -200043971 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 763 321 69 53 chr5 3041645 3042225 -200043307 - L1MC4a LINE L1 -1795 6013 5425 950 232 70 35 chr5 3042250 3042595 -200042937 + MER74B LTR ERVL 261 617 -5 953 236 16 64 chr5 3042598 3043047 -200042485 - L1MC4a LINE L1 -717 5449 5024 1082 156 0 118 chr5 3044634 3044871 -200040661 - AluJb SINE Alu -19 293 85 239 308 56 52 chr5 3047650 3047676 -200037856 + HAL1 LINE L1 2254 2278 -229 189 0 0 0 chr5 3047676 3047697 -200037835 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 239 308 56 52 chr5 3047697 3047920 -200037612 + HAL1 LINE L1 2278 2504 -3 231 184 53 13 chr5 3047991 3048067 -200037465 + CT-rich Low_complexity Low_complexity 1 79 0 1122 209 17 120 chr5 3049391 3049798 -200035734 - MLT1A1 LTR MaLR 0 365 1 492 233 194 30 chr5 3049829 3050061 -200035471 + MER5C DNA MER1_type 55 324 0 22 0 0 0 chr5 3051176 3051198 -200034334 + AT_rich Low_complexity Low_complexity 1 22 0 363 276 155 0 chr5 3053532 3053648 -200031884 - MIR SINE MIR -11 251 118 208 329 44 44 chr5 3053622 3053759 -200031773 - MER91A DNA MER1_type -26 170 34 * 641 149 0 8 chr5 3056488 3056622 -200028910 + (TTCC)n Simple_repeat Simple_repeat 3 135 0 5358 155 21 25 chr5 3056718 3057827 -200027705 - L1MA7 LINE L1 0 6291 5188 4775 173 19 4 chr5 3057820 3058790 -200026742 + L1MA7 LINE L1 4202 5185 -961 * 1900 211 0 0 chr5 3062265 3062611 -200022921 - MER7A DNA MER2_type -1 345 2 2238 93 0 0 chr5 3062712 3062992 -200022540 + AluSx SINE Alu 33 312 0 297 0 0 0 chr5 3063277 3063310 -200022222 + (CA)n Simple_repeat Simple_repeat 2 34 0 25 0 0 0 chr5 3063622 3063647 -200021885 + AT_rich Low_complexity Low_complexity 1 25 0 208 298 18 0 chr5 3066548 3066605 -200018927 + CT-rich Low_complexity Low_complexity 6 63 0 696 309 75 10 chr5 3067215 3067510 -200018022 - L3 LINE CR1 -622 955 642 861 190 0 118 chr5 3068045 3068282 -200017250 - AluJb SINE Alu -19 293 85 180 0 0 0 chr5 3068684 3068704 -200016828 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 288 0 0 0 chr5 3069955 3069987 -200015545 + (TG)n Simple_repeat Simple_repeat 2 33 0 2092 132 0 0 chr5 3072158 3072459 -200013073 - AluSg SINE Alu 0 301 1 304 216 72 72 chr5 3073452 3073577 -200011955 - L1MEd LINE L1 -5176 943 819 24 0 0 0 chr5 3074127 3074151 -200011381 + AT_rich Low_complexity Low_complexity 1 24 0 520 370 49 52 chr5 3074278 3074595 -200010937 + L1MC4a LINE L1 4296 4612 -1534 2277 60 32 11 chr5 3074595 3074879 -200010653 - AluY SINE Alu -21 290 1 520 370 49 52 chr5 3074879 3075433 -200010099 + L1MC4a LINE L1 4612 5165 -981 226 253 0 12 chr5 3075590 3075673 -200009859 + L1MC4a LINE L1 5316 5397 -962 816 228 140 40 chr5 3075870 3076308 -200009224 + MLT1D LTR MaLR 5 378 -12 320 250 40 92 chr5 3076586 3076738 -200008794 + L1MC4a LINE L1 6121 6264 -1544 353 277 64 58 chr5 3076824 3077012 -200008520 + L1ME4a LINE L1 5933 6121 0 23 33 0 0 chr5 3078290 3078320 -200007212 + AT_rich Low_complexity Low_complexity 1 30 0 201 119 24 24 chr5 3079879 3079921 -200005611 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 278 80 60 0 chr5 3079923 3079973 -200005559 - L1MA4 LINE L1 -5 6295 6243 3097 38 0 0 chr5 3080216 3080584 -200004948 - L1PA4 LINE L1 -3 6152 5785 256 242 39 70 chr5 3081596 3081724 -200003808 - LTR16C LTR ERVL -2 489 366 1051 39 0 0 chr5 3085089 3085217 -200000315 + L1PA4 LINE L1 6028 6155 0 587 207 40 8 chr5 3088792 3088940 -199996592 - MLT1C LTR MaLR 0 458 238 239 321 97 12 chr5 3089021 3089186 -199996346 - MLT1C LTR MaLR -322 183 5 1194 214 117 35 chr5 3090968 3091285 -199994247 + MER2 DNA MER2_type 1 343 -1 351 332 124 31 chr5 3091518 3091744 -199993788 - L3 LINE CR1 -1050 527 281 449 312 53 72 chr5 3091790 3092053 -199993479 - MIR SINE MIR -3 259 2 2472 85 0 0 chr5 3096713 3097008 -199988524 - AluSg SINE Alu -15 295 1 21 0 0 0 chr5 3097016 3097037 -199988495 + AT_rich Low_complexity Low_complexity 1 21 0 2219 84 19 22 chr5 3097637 3097948 -199987584 - AluSq SINE Alu -3 310 1 23 0 0 0 chr5 3097983 3098006 -199987526 + AT_rich Low_complexity Low_complexity 1 23 0 2204 133 0 0 chr5 3099162 3099462 -199986070 + AluSq SINE Alu 1 300 -13 595 257 60 6 chr5 3099644 3099827 -199985705 + MIR SINE MIR 67 259 -3 669 232 46 66 chr5 3100495 3100754 -199984778 - MLT1C LTR MaLR 0 467 214 1724 196 33 53 chr5 3100977 3101294 -199984238 + MER65A LTR ERV1 1 308 -137 6222 75 0 1 chr5 3101294 3102122 -199983410 + L1PA7 LINE L1 5346 6154 0 1724 196 33 53 chr5 3102122 3102258 -199983274 + MER65A LTR ERV1 308 445 0 1760 183 36 25 chr5 3103758 3104119 -199981413 - MLT1A1 LTR MaLR 0 365 1 2283 98 0 3 chr5 3104270 3104567 -199980965 + AluSg SINE Alu 1 296 -14 1606 155 66 7 chr5 3104715 3104986 -199980546 + AluJo SINE Alu 7 293 -19 1918 139 28 0 chr5 3107995 3108283 -199977249 - AluSx SINE Alu -16 296 1 228 196 0 20 chr5 3110049 3110100 -199975432 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 2146 114 20 0 chr5 3110490 3110788 -199974744 + AluSx SINE Alu 1 304 -8 202 209 0 0 chr5 3110920 3110963 -199974569 + (CA)n Simple_repeat Simple_repeat 2 44 0 385 181 44 0 chr5 3114048 3114149 -199971383 + L1M4 LINE L1 1024 1275 -5271 24 53 0 0 chr5 3114222 3114260 -199971272 + AT_rich Low_complexity Low_complexity 1 38 0 399 277 80 40 chr5 3114344 3114568 -199970964 + L1ME LINE L1 5590 5822 -299 532 269 83 65 chr5 3114583 3115329 -199970203 + L1M4 LINE L1 1389 2360 -4465 4958 262 58 30 chr5 3115330 3116357 -199969175 + L1M4 LINE L1 2384 3381 -3263 1780 168 28 0 chr5 3116357 3116642 -199968890 - AluJb SINE Alu -18 294 2 4958 262 58 30 chr5 3116642 3117884 -199967648 + L1M4 LINE L1 3381 4686 -1958 2074 253 62 37 chr5 3118004 3119253 -199966279 + L1M4 LINE L1 4930 6222 -440 318 295 103 46 chr5 3119493 3119795 -199965737 + L1M4 LINE L1 2411 2729 -3653 453 194 136 99 chr5 3119979 3120221 -199965311 - MLT1F1 LTR MaLR -209 358 108 496 141 202 10 chr5 3120385 3120484 -199965048 - Tigger1 DNA MER2_type 0 2418 2301 900 181 66 6 chr5 3121680 3121862 -199963670 + MER58 DNA MER1_type 1 193 -148 2184 102 3 10 chr5 3121889 3122184 -199963348 + AluY SINE Alu 1 293 -18 7384 127 23 6 chr5 3122184 3123347 -199962185 - Tigger1 DNA MER2_type -109 2309 1127 1083 223 48 53 chr5 3123447 3123824 -199961708 + MLT1C LTR MaLR 77 451 -16 548 276 65 5 chr5 3124125 3124324 -199961208 - MLT1J LTR MaLR -246 265 55 1519 134 0 0 chr5 3124812 3125028 -199960504 - AluSg/x SINE Alu -1 311 96 236 324 76 34 chr5 3125246 3125508 -199960024 - L1ME LINE L1 -302 5819 5547 1245 204 106 23 chr5 3126602 3126950 -199958582 + MLT1B LTR MaLR 6 382 -8 548 232 132 32 chr5 3127487 3127707 -199957825 + MLT1C LTR MaLR 6 247 -220 1057 202 51 14 chr5 3128834 3129216 -199956316 - MLT1B LTR MaLR -38 352 2 2256 105 0 3 chr5 3129285 3129636 -199955896 + AluSg SINE Alu 1 350 0 1024 174 9 19 chr5 3130688 3130900 -199954632 + L1MA4 LINE L1 6091 6300 0 453 292 97 36 chr5 3130900 3131439 -199954093 + L1MC/D LINE L1 951 1504 -4625 29 47 0 0 chr5 3131665 3131708 -199953824 + AT_rich Low_complexity Low_complexity 1 43 0 297 323 143 37 chr5 3132165 3132470 -199953062 + L1MC/D LINE L1 3457 3818 -2311 2248 99 0 0 chr5 3132470 3132786 -199952746 - AluSx SINE Alu 0 318 3 297 323 143 37 chr5 3132786 3132885 -199952647 + L1MC/D LINE L1 3818 3905 -2224 * 686 252 38 24 chr5 3132872 3133082 -199952450 + L1MD3 LINE L1 7783 7995 0 455 291 166 32 chr5 3133079 3133519 -199952013 + HAL1 LINE L1 1553 2051 -456 * 21 0 0 0 chr5 3134114 3134135 -199951397 + AT_rich Low_complexity Low_complexity 1 21 0 425 308 74 8 chr5 3134244 3134504 -199951028 + L1MC/D LINE L1 5197 5471 -743 717 235 54 0 chr5 3134606 3134810 -199950722 - L1ME3 LINE L1 0 6162 5948 2347 248 64 90 chr5 3134943 3135105 -199950427 - L1ME3 LINE L1 -1127 5019 4854 406 159 16 0 chr5 3135105 3135198 -199950334 - AluJ/FRAM SINE Alu 0 314 221 2347 248 64 90 chr5 3135198 3136328 -199949204 - L1ME3 LINE L1 -1292 4854 3699 2374 244 74 53 chr5 3136348 3136595 -199948937 + L1M4 LINE L1 3797 4037 -2109 2065 119 0 14 chr5 3136595 3136930 -199948602 + AluSp SINE Alu 1 331 0 2374 244 74 53 chr5 3136930 3137780 -199947752 + L1M4 LINE L1 4037 4919 -1227 499 197 0 26 chr5 3137911 3138028 -199947504 + L1MB8 LINE L1 6064 6177 -1 1748 210 54 32 chr5 3138067 3139199 -199946333 - L1MC/D LINE L1 -608 5751 4618 210 342 13 0 chr5 3139334 3139413 -199946119 - L2 LINE L2 0 3272 3193 191 349 0 0 chr5 3139772 3139838 -199945694 - L2 LINE L2 0 3313 3248 1377 211 41 64 chr5 3140207 3140643 -199944889 - MSTB LTR MaLR 0 426 1 23 0 0 0 chr5 3142377 3142400 -199943132 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr5 3144693 3144722 -199940810 + GC_rich Low_complexity Low_complexity 1 29 0 297 237 8 42 chr5 3147758 3147937 -199937595 + G-rich Low_complexity Low_complexity 1 172 0 248 275 0 0 chr5 3148008 3148077 -199937455 + C-rich Low_complexity Low_complexity 2 70 0 200 111 28 0 chr5 3148277 3148313 -199937219 + (CCG)n Simple_repeat Simple_repeat 2 38 0 39 100 0 0 chr5 3148340 3148470 -199937062 + GC_rich Low_complexity Low_complexity 1 130 0 192 40 0 0 chr5 3148680 3148705 -199936827 + (CCG)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr5 3148800 3148821 -199936711 + GC_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr5 3148929 3148960 -199936572 + GC_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr5 3151068 3151096 -199934436 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr5 3151130 3151151 -199934381 + GC_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr5 3151213 3151262 -199934270 + GC_rich Low_complexity Low_complexity 1 49 0 27 0 0 0 chr5 3151545 3151572 -199933960 + GC_rich Low_complexity Low_complexity 1 27 0 359 164 0 16 chr5 3152557 3152618 -199932914 + L1MC4 LINE L1 6644 6703 -1339 208 162 27 0 chr5 3152619 3152656 -199932876 + (TATATG)n Simple_repeat Simple_repeat 6 43 0 198 0 0 0 chr5 3153120 3153142 -199932390 + (A)n Simple_repeat Simple_repeat 1 22 0 450 0 0 0 chr5 3155768 3155818 -199929714 + (CA)n Simple_repeat Simple_repeat 2 51 0 21 57 0 0 chr5 3156338 3156373 -199929159 + GC_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr5 3156502 3156539 -199928993 + GC_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr5 3157262 3157302 -199928230 + AT_rich Low_complexity Low_complexity 1 40 0 1024 225 61 58 chr5 3162876 3163529 -199922003 - Zaphod DNA AcHobo -20 4011 736 921 140 136 9 chr5 3164238 3164459 -199921073 - L1MC2 LINE L1 0 6344 6096 259 224 0 15 chr5 3164652 3164719 -199920813 - MER53 DNA DNA -120 69 4 1628 180 27 24 chr5 3168780 3169074 -199916458 - AluJo SINE Alu -13 299 5 219 148 16 33 chr5 3170108 3170169 -199915363 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 336 48 0 0 chr5 3170441 3170483 -199915049 + (CA)n Simple_repeat Simple_repeat 2 43 0 211 358 100 0 chr5 3171085 3171205 -199914327 + L2 LINE L2 3133 3264 -8 209 289 107 71 chr5 3172197 3172394 -199913138 - MIR SINE MIR -45 217 14 28 0 0 0 chr5 3173096 3173124 -199912408 + AT_rich Low_complexity Low_complexity 1 28 0 1953 131 0 38 chr5 3176115 3176405 -199909127 + AluSx SINE Alu 1 279 -33 210 71 0 0 chr5 3176407 3176435 -199909097 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr5 3177280 3177303 -199908229 + AT_rich Low_complexity Low_complexity 1 23 0 1471 157 80 44 chr5 3181827 3181981 -199903551 - THE1C LTR MaLR -12 416 269 288 0 0 0 chr5 3181981 3182013 -199903519 + (GA)n Simple_repeat Simple_repeat 1 32 0 1471 157 80 44 chr5 3182013 3182186 -199903346 - THE1C LTR MaLR -159 269 9 315 83 0 21 chr5 3182186 3182234 -199903298 - THE1B LTR MaLR -317 47 1 500 266 137 78 chr5 3182303 3182724 -199902808 - MLT1D LTR MaLR -2 465 27 238 286 12 12 chr5 3182860 3182944 -199902588 + CT-rich Low_complexity Low_complexity 4 87 0 801 236 34 0 chr5 3183443 3183621 -199901911 - MLT1G LTR MaLR -13 577 394 1572 216 18 9 chr5 3183621 3183955 -199901577 + MLT2C1 LTR ERVL 1 337 -60 453 153 201 49 chr5 3183955 3184099 -199901433 - MER4A LTR ERV1 0 465 300 1916 125 38 60 chr5 3184139 3184524 -199901008 - MER4A LTR ERV1 -240 357 2 271 242 15 0 chr5 3184776 3184842 -199900690 - MLT1G LTR MaLR -57 533 467 * 371 337 28 17 chr5 3184838 3185019 -199900513 - MLT1G LTR MaLR -407 183 1 26 0 0 0 chr5 3185527 3185553 -199899979 + AT_rich Low_complexity Low_complexity 1 26 0 627 308 97 21 chr5 3186391 3186898 -199898634 - MLT1G LTR MaLR 0 590 18 216 0 0 0 chr5 3186996 3187020 -199898512 + (TCCA)n Simple_repeat Simple_repeat 2 25 0 3037 155 28 6 chr5 3187353 3187856 -199897676 - MER1A DNA MER1_type 0 529 16 189 147 0 0 chr5 3187981 3188015 -199897517 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 260 369 92 18 chr5 3188018 3188346 -199897186 + L2 LINE L2 2916 3267 -5 1926 179 0 3 chr5 3188626 3188939 -199896593 + AluSx SINE Alu 1 312 0 358 302 43 2 chr5 3189569 3189703 -199895829 - MIR SINE MIR -46 162 34 223 49 49 0 chr5 3241237 3241278 -199844254 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 471 219 0 0 chr5 3242025 3242203 -199843329 + (TG)n Simple_repeat Simple_repeat 2 179 0 404 236 6 0 chr5 3242249 3242427 -199843105 + (TG)n Simple_repeat Simple_repeat 1 179 0 362 214 7 0 chr5 3242462 3242607 -199842925 + (TG)n Simple_repeat Simple_repeat 2 147 0 312 302 82 60 chr5 3244102 3244334 -199841198 - L1M4 LINE L1 -813 5333 5097 903 190 6 0 chr5 3244413 3244587 -199840945 - FRAM SINE Alu -7 169 1 22 0 0 0 chr5 3246215 3246237 -199839295 + AT_rich Low_complexity Low_complexity 1 22 0 2116 110 3 13 chr5 3246361 3246670 -199838862 + AluSx SINE Alu 1 306 -6 212 197 0 33 chr5 3247907 3247968 -199837564 + GA-rich Low_complexity Low_complexity 3 61 0 1920 163 10 7 chr5 3248454 3248760 -199836772 + AluJb SINE Alu 6 312 0 2331 87 3 13 chr5 3250023 3250335 -199835197 - AluY SINE Alu -2 309 1 2113 131 0 0 chr5 3251596 3251922 -199833610 + AluSx SINE Alu 1 326 0 181 286 0 54 chr5 3254952 3255008 -199830524 + MIR SINE MIR 95 145 -63 204 200 0 0 chr5 3255579 3255614 -199829918 - L3 LINE CR1 -994 583 549 27 0 0 0 chr5 3256526 3256553 -199828979 + AT_rich Low_complexity Low_complexity 1 27 0 285 309 51 86 chr5 3257125 3257520 -199828012 + MLT1I LTR MaLR 20 400 -9 182 150 25 0 chr5 3259649 3259689 -199825843 + (TA)n Simple_repeat Simple_repeat 1 41 0 2262 134 10 21 chr5 3259700 3260089 -199825443 + L1PA16 LINE L1 5524 5908 -258 183 80 0 0 chr5 3260089 3260114 -199825418 + (TATATG)n Simple_repeat Simple_repeat 3 27 0 960 36 61 0 chr5 3260767 3260932 -199824600 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 336 393 23 40 chr5 3261368 3261486 -199824046 + L1MC4a LINE L1 5548 5666 -2142 6921 75 6 0 chr5 3261486 3262580 -199822952 + L1PA8 LINE L1 5090 6193 0 336 393 23 40 chr5 3262580 3262814 -199822718 + L1MC4a LINE L1 5666 5895 -1913 304 318 90 42 chr5 3263982 3264171 -199821361 + L1MDa LINE L1 2441 2638 -3902 271 308 91 23 chr5 3264529 3264750 -199820782 - MER106A DNA MER1_type 0 236 1 3565 190 11 22 chr5 3264807 3265439 -199820093 - MER72 LTR ERV1 0 722 98 2216 114 3 19 chr5 3265439 3265756 -199819776 - AluSx SINE Alu 0 312 1 3565 190 11 22 chr5 3265756 3265853 -199819679 - MER72 LTR ERV1 -624 98 1 182 341 11 0 chr5 3267878 3267966 -199817566 - L2 LINE L2 -836 2478 2390 291 114 0 0 chr5 3271922 3271966 -199813566 + (CA)n Simple_repeat Simple_repeat 1 44 0 244 346 57 0 chr5 3275026 3275155 -199810377 - MIR SINE MIR -77 131 16 2193 114 3 7 chr5 3275214 3275520 -199810012 + AluSc SINE Alu 5 309 0 437 279 33 0 chr5 3276980 3277102 -199808430 - MER63 DNA MER1_type -279 783 32 2286 110 0 3 chr5 3281571 3281870 -199803662 - AluY SINE Alu -13 298 1 2059 141 3 0 chr5 3282080 3282378 -199803154 + AluSx SINE Alu 1 299 -13 330 274 109 95 chr5 3282682 3283094 -199802438 - L2 LINE L2 -31 3241 2824 280 302 113 22 chr5 3286093 3286368 -199799164 - LTR16A1 LTR ERVL -2 455 156 243 250 0 0 chr5 3288097 3288157 -199797375 + (CA)n Simple_repeat Simple_repeat 2 61 0 291 247 28 22 chr5 3288399 3288577 -199796955 + (TA)n Simple_repeat Simple_repeat 2 180 0 360 276 57 9 chr5 3288956 3289061 -199796471 + L2 LINE L2 3203 3312 -1 290 279 7 57 chr5 3291996 3292136 -199793396 + MER115 DNA AcHobo 505 637 -56 2138 125 7 0 chr5 3293199 3293496 -199792036 - AluSx SINE Alu -13 299 1 2367 100 0 6 chr5 3293686 3294015 -199791517 + L1PA8A LINE L1 5798 6124 -7 181 268 73 49 chr5 3295241 3295323 -199790209 + MIR SINE MIR 65 148 -114 447 289 112 27 chr5 3295552 3295739 -199789793 - MIR SINE MIR 0 262 60 300 0 0 0 chr5 3296285 3296321 -199789211 + L1PA6 LINE L1 6111 6146 -8 845 209 81 0 chr5 3296337 3296548 -199788984 - MLT2C2 LTR ERVL -236 228 1 193 316 168 11 chr5 3297189 3297284 -199788248 + MER5A DNA MER1_type 10 119 -70 612 268 166 50 chr5 3297374 3297777 -199787755 + MLT1F LTR MaLR 85 534 -8 363 319 137 28 chr5 3297902 3298259 -199787273 + L2 LINE L2 2576 2971 -343 188 384 0 27 chr5 3298299 3298411 -199787121 + L2 LINE L2 3168 3276 -37 2216 92 13 10 chr5 3298588 3298893 -199786639 - AluSc SINE Alu -3 306 1 560 273 136 10 chr5 3299102 3299300 -199786232 + MER58A DNA MER1_type 1 223 -1 188 229 62 0 chr5 3301014 3301062 -199784470 + L2 LINE L2 3222 3272 0 302 276 133 0 chr5 3302495 3302600 -199782932 + L1M4 LINE L1 3039 3157 -2989 * 414 276 115 0 chr5 3302594 3302750 -199782782 + L1M4 LINE L1 3081 3254 -2892 538 266 101 38 chr5 3302850 3303117 -199782415 + L1M4 LINE L1 3579 3862 -2284 229 300 12 0 chr5 3303809 3303889 -199781643 + (TA)n Simple_repeat Simple_repeat 2 82 0 998 254 71 97 chr5 3306063 3307328 -199778204 - L1ME LINE L1 -4602 1659 371 427 341 101 23 chr5 3307522 3308088 -199777444 - L1 LINE L1 -2285 3861 3252 2828 16 0 0 chr5 3308248 3308552 -199776980 - AluYb8 SINE Alu -14 304 1 21 0 0 0 chr5 3308723 3308744 -199776788 + AT_rich Low_complexity Low_complexity 1 21 0 323 325 122 27 chr5 3308850 3309398 -199776134 - L1 LINE L1 -3381 2765 2166 384 338 55 55 chr5 3309954 3310297 -199775235 - HAL1b LINE L1 -710 638 296 1841 113 7 25 chr5 3310428 3310703 -199774829 - AluSq SINE Alu -39 274 5 284 284 61 34 chr5 3311406 3311554 -199773978 + L1ME LINE L1 5533 5684 -437 35 0 0 0 chr5 3311595 3311630 -199773902 + AT_rich Low_complexity Low_complexity 1 35 0 329 272 22 0 chr5 3311857 3311949 -199773583 - L1MC4 LINE L1 -1338 6704 6611 440 205 6 0 chr5 3312625 3312781 -199772751 + (TG)n Simple_repeat Simple_repeat 1 157 0 486 213 0 0 chr5 3312794 3312954 -199772578 + (TG)n Simple_repeat Simple_repeat 2 161 0 294 222 81 0 chr5 3312957 3313056 -199772476 + (TCTG)n Simple_repeat Simple_repeat 4 110 0 566 188 0 6 chr5 3313061 3313242 -199772290 + (TG)n Simple_repeat Simple_repeat 1 180 0 342 249 0 0 chr5 3313266 3313439 -199772093 + (TG)n Simple_repeat Simple_repeat 2 174 0 385 152 22 43 chr5 3314155 3314339 -199771193 + (CA)n Simple_repeat Simple_repeat 1 180 0 210 306 45 18 chr5 3316807 3316918 -199768614 + MER5A DNA MER1_type 1 114 -75 2369 95 0 0 chr5 3316984 3317290 -199768242 - AluSx SINE Alu -6 306 1 405 39 0 0 chr5 3317979 3318030 -199767502 + (TC)n Simple_repeat Simple_repeat 2 52 0 926 301 36 40 chr5 3319657 3320106 -199765426 - MLT1E3 LTR MaLR -12 612 166 717 207 4 0 chr5 3321772 3322042 -199763490 + (TCCA)n Simple_repeat Simple_repeat 1 271 0 1622 272 42 27 chr5 3323995 3324542 -199760990 + MLT1H1 LTR MaLR 1 555 0 287 248 91 16 chr5 3324733 3324854 -199760678 + MIR SINE MIR 85 214 -48 1385 142 0 0 chr5 3324900 3325097 -199760435 - AluSc SINE Alu -16 293 97 5603 87 1 20 chr5 3325904 3326713 -199758819 + L1PA8A LINE L1 5331 6124 -7 504 48 0 0 chr5 3327896 3327959 -199757573 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 1170 117 0 0 chr5 3327959 3328138 -199757394 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 763 133 7 14 chr5 3328143 3328286 -199757246 + (GAAA)n Simple_repeat Simple_repeat 2 143 0 378 42 0 0 chr5 3328563 3328611 -199756921 + (CA)n Simple_repeat Simple_repeat 2 49 0 396 167 0 0 chr5 3330210 3330282 -199755250 + (TG)n Simple_repeat Simple_repeat 1 72 0 1472 201 30 0 chr5 3332129 3332433 -199753099 - MLT1B LTR MaLR -7 383 71 482 151 28 38 chr5 3332457 3332563 -199752969 - MLT1B LTR MaLR -272 118 14 342 204 39 107 chr5 3334131 3334234 -199751298 - L1ME1 LINE L1 0 6444 6349 1831 270 54 22 chr5 3334316 3336657 -199748875 - L1ME1 LINE L1 -77 6369 3561 231 184 20 0 chr5 3336656 3336705 -199748827 + L1MCc LINE L1 823 872 -5551 * 220 327 98 19 chr5 3337642 3337725 -199747807 - MIR SINE MIR -40 222 147 192 77 0 0 chr5 3337725 3337751 -199747781 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 220 327 98 19 chr5 3337751 3337872 -199747660 - MIR SINE MIR -115 147 2 313 319 55 40 chr5 3339821 3340094 -199745438 - L1ME1 LINE L1 -3518 2908 2632 278 319 85 11 chr5 3340179 3340367 -199745165 + LTR33 LTR ERVL 15 216 -305 2015 152 3 0 chr5 3340590 3340887 -199744645 - AluJb SINE Alu -14 298 1 359 306 126 0 chr5 3341072 3341278 -199744254 - L1ME1 LINE L1 -3981 2445 2214 2035 137 3 0 chr5 3342248 3342540 -199742992 + AluSq SINE Alu 1 293 -20 3580 65 9 2 chr5 3342877 3343338 -199742194 - L1PA8 LINE L1 -1 6171 5708 295 237 50 101 chr5 3346160 3346299 -199739233 + LTR33A LTR ERVL 61 192 -331 2371 32 43 11 chr5 3347665 3347975 -199737557 - AluY SINE Alu 0 311 3 249 108 0 0 chr5 3349520 3349557 -199735975 + (A)n Simple_repeat Simple_repeat 1 37 0 358 211 62 62 chr5 3350783 3350911 -199734621 - L1ME4a LINE L1 0 6121 5994 460 353 56 71 chr5 3353831 3354635 -199730897 + L1ME2 LINE L1 376 1167 -5554 373 251 74 82 chr5 3354734 3355124 -199730408 + L1ME2 LINE L1 1262 1648 -4892 246 222 0 0 chr5 3355154 3355208 -199730324 + GA-rich Low_complexity Low_complexity 1 54 0 253 262 84 61 chr5 3355215 3355478 -199730054 + L1ME2 LINE L1 1675 1943 -4597 306 299 11 92 chr5 3355562 3355736 -199729796 + L1ME2 LINE L1 2019 2178 -4362 302 256 78 11 chr5 3355904 3355994 -199729538 + L1ME2 LINE L1 2345 2440 -4281 421 293 58 10 chr5 3355996 3356328 -199729204 + L1ME2 LINE L1 2399 2749 -3791 796 172 55 43 chr5 3356367 3356530 -199729002 + FRAM SINE Alu 1 156 -20 367 235 10 10 chr5 3356530 3356628 -199728904 + L1ME2 LINE L1 5564 5661 -879 227 237 23 8 chr5 3356631 3356762 -199728770 + (TA)n Simple_repeat Simple_repeat 2 134 0 2085 288 51 22 chr5 3356771 3357610 -199727922 + L1ME2 LINE L1 5683 6549 -9 363 223 157 16 chr5 3359180 3359301 -199726231 - L2 LINE L2 0 3313 3176 301 270 92 58 chr5 3359437 3359934 -199725598 - MLT1F LTR MaLR -90 452 2 408 245 90 58 chr5 3360005 3360160 -199725372 - MIR SINE MIR -17 245 86 195 280 118 11 chr5 3362068 3362161 -199723371 - L2 LINE L2 -145 3127 3025 1683 125 131 41 chr5 3362860 3363204 -199722328 + THE1C LTR MaLR 1 375 0 1682 195 13 10 chr5 3364003 3364311 -199721221 - AluJb SINE Alu -3 309 1 449 289 84 4 chr5 3365340 3365589 -199719943 - Charlie5 DNA MER1_type 0 2620 2352 448 246 27 77 chr5 3365588 3365771 -199719761 - Charlie5 DNA MER1_type -2413 199 26 * 194 180 0 60 chr5 3367066 3367166 -199718366 + (CA)n Simple_repeat Simple_repeat 1 94 0 433 257 6 39 chr5 3367231 3367410 -199718122 + (CA)n Simple_repeat Simple_repeat 1 173 0 336 272 16 38 chr5 3367583 3367767 -199717765 + (CA)n Simple_repeat Simple_repeat 1 180 0 315 256 0 0 chr5 3368666 3368756 -199716776 + (TGGA)n Simple_repeat Simple_repeat 4 93 0 932 183 7 0 chr5 3368772 3369068 -199716464 + (TGGA)n Simple_repeat Simple_repeat 1 298 0 180 176 0 0 chr5 3369086 3369120 -199716412 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 809 185 6 0 chr5 3369140 3369313 -199716219 + (TAGA)n Simple_repeat Simple_repeat 3 176 0 351 0 0 0 chr5 3369631 3369670 -199715862 + (TG)n Simple_repeat Simple_repeat 2 40 0 702 187 49 76 chr5 3372569 3372794 -199712738 + MER20 DNA MER1_type 1 219 0 188 326 167 0 chr5 3372973 3373105 -199712427 + MIR SINE MIR 103 256 -6 302 123 37 25 chr5 3373215 3373296 -199712236 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 1520 225 77 64 chr5 3374347 3374813 -199710719 + MLT1H1 LTR MaLR 16 491 -64 2080 135 14 0 chr5 3374813 3375109 -199710423 - AluSx SINE Alu -12 300 1 1520 225 77 64 chr5 3375109 3375175 -199710357 + MLT1H1 LTR MaLR 491 555 0 363 318 19 7 chr5 3375319 3375473 -199710059 + MER112 DNA MER1_type 97 252 -8 407 213 7 0 chr5 3376732 3376873 -199708659 + (TG)n Simple_repeat Simple_repeat 1 142 0 759 176 0 2 chr5 3376890 3377494 -199708038 + (TG)n Simple_repeat Simple_repeat 1 602 0 701 175 4 0 chr5 3377507 3377765 -199707767 + (TG)n Simple_repeat Simple_repeat 1 259 0 194 365 73 10 chr5 3380382 3380478 -199705054 - MIR SINE MIR -159 103 2 5294 168 21 10 chr5 3380705 3381738 -199703794 - L1MA6 LINE L1 0 6300 5256 443 266 35 53 chr5 3381738 3381907 -199703625 + MER5B DNA MER1_type 8 173 -5 1946 193 29 60 chr5 3381983 3382180 -199703352 + MER82 DNA MER2_type 1 203 -450 2125 160 30 0 chr5 3382180 3382518 -199703014 + MER7A DNA MER2_type 1 346 0 1946 193 29 60 chr5 3382518 3382801 -199702731 + MER82 DNA MER2_type 203 466 -187 698 211 18 4 chr5 3382839 3383307 -199702225 + (CA)n Simple_repeat Simple_repeat 1 474 0 587 159 34 28 chr5 3383290 3383466 -199702066 + (CATA)n Simple_repeat Simple_repeat 2 178 0 * 642 274 93 13 chr5 3384162 3384472 -199701060 + MER93b LTR ERV1 39 373 0 1638 195 139 0 chr5 3386369 3386743 -199698789 - MSTA LTR MaLR -2 426 1 2275 80 35 0 chr5 3387134 3387421 -199698111 + AluSp SINE Alu 1 297 -16 2210 119 13 0 chr5 3388539 3388842 -199696690 + AluSx SINE Alu 1 307 -5 541 239 16 38 chr5 3390728 3390912 -199694620 + L1MA10 LINE L1 6108 6287 -47 1432 229 38 15 chr5 3394138 3394478 -199691054 + MER7A DNA MER2_type 1 346 0 360 298 44 73 chr5 3394547 3394766 -199690766 - MIR SINE MIR -34 228 19 423 0 0 0 chr5 3394978 3395025 -199690507 + (TG)n Simple_repeat Simple_repeat 2 48 0 32 43 0 0 chr5 3395330 3395376 -199690156 + AT_rich Low_complexity Low_complexity 1 46 0 316 57 0 38 chr5 3396157 3396210 -199689322 + (TCCCG)n Simple_repeat Simple_repeat 3 53 0 591 127 25 0 chr5 3396233 3396351 -199689181 + CT-rich Low_complexity Low_complexity 3 123 0 1645 100 8 34 chr5 3396359 3396598 -199688934 - AluSg/x SINE Alu -6 306 74 581 185 0 22 chr5 3396959 3397143 -199688389 + CT-rich Low_complexity Low_complexity 1 180 0 228 294 0 0 chr5 3397807 3397926 -199687606 + (CA)n Simple_repeat Simple_repeat 1 119 0 195 299 28 47 chr5 3397973 3398080 -199687452 + L2 LINE L2 1831 1935 -1379 343 247 0 0 chr5 3399060 3399141 -199686391 - MLT1D LTR MaLR 0 505 425 196 222 97 28 chr5 3399267 3399339 -199686193 - MIR SINE MIR -97 165 89 852 203 0 0 chr5 3399394 3399735 -199685797 + (TGGA)n Simple_repeat Simple_repeat 1 341 0 765 194 0 0 chr5 3399755 3399925 -199685607 + (TGGA)n Simple_repeat Simple_repeat 1 170 0 902 181 0 3 chr5 3399943 3400308 -199685224 + (TGGA)n Simple_repeat Simple_repeat 1 363 0 1146 188 0 0 chr5 3400328 3400675 -199684857 + (TGGA)n Simple_repeat Simple_repeat 1 347 0 214 280 40 0 chr5 3401378 3401428 -199684104 + MER5B DNA MER1_type 125 176 -2 2372 81 0 0 chr5 3401520 3401830 -199683702 - AluY SINE Alu -1 310 1 324 284 193 25 chr5 3403522 3403765 -199681767 - L2 LINE L2 -1242 2072 1789 228 309 118 58 chr5 3404191 3404537 -199680995 - L2 LINE L2 -1758 1556 1190 221 273 191 22 chr5 3404613 3404844 -199680688 - L2 LINE L2 -2311 1003 734 1990 122 0 0 chr5 3406713 3407000 -199678532 + AluSx SINE Alu 11 297 -15 1771 147 0 10 chr5 3407367 3407660 -199677872 + AluJb SINE Alu 1 290 -22 2492 110 31 8 chr5 3409148 3409504 -199676028 - THE1B LTR MaLR 0 364 1 1071 224 113 36 chr5 3409577 3409912 -199675620 - MLT1A1 LTR MaLR -2 363 3 403 253 121 91 chr5 3410197 3410537 -199674995 - MLT1I LTR MaLR 0 409 60 226 271 17 0 chr5 3410644 3410703 -199674829 - MIR SINE MIR -171 91 32 1713 191 34 8 chr5 3413052 3413408 -199672124 + MLT1A1 LTR MaLR 1 365 0 303 298 116 56 chr5 3413597 3413795 -199671737 + L1M4 LINE L1 3770 3979 -2167 266 288 34 20 chr5 3413927 3414073 -199671459 + L1M4 LINE L1 4128 4275 -1871 27 29 0 0 chr5 3414634 3414668 -199670864 + AT_rich Low_complexity Low_complexity 1 34 0 1113 163 128 0 chr5 3414677 3414935 -199670597 - MER33 DNA MER1_type -1 323 33 475 327 24 6 chr5 3415374 3415542 -199669990 + MIR SINE MIR 46 216 -46 250 250 0 0 chr5 3416756 3416812 -199668720 + (CA)n Simple_repeat Simple_repeat 2 57 0 21 82 0 0 chr5 3417379 3417428 -199668104 + AT_rich Low_complexity Low_complexity 1 49 0 1186 239 34 34 chr5 3417578 3417934 -199667598 - MLT1A2 LTR MaLR 0 374 19 23 0 0 0 chr5 3419560 3419583 -199665949 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr5 3419991 3420012 -199665520 + (TAA)n Simple_repeat Simple_repeat 2 22 0 407 306 19 19 chr5 3420014 3420171 -199665361 - MIR SINE MIR -11 251 95 297 276 14 55 chr5 3420306 3420451 -199665081 + (CATG)n Simple_repeat Simple_repeat 1 139 0 214 406 6 6 chr5 3420513 3420688 -199664844 + (CA)n Simple_repeat Simple_repeat 1 175 0 22 0 0 0 chr5 3421911 3421933 -199663599 + AT_rich Low_complexity Low_complexity 1 22 0 950 180 6 0 chr5 3422003 3422195 -199663337 - AluSx SINE Alu 0 313 121 568 176 0 0 chr5 3422231 3422322 -199663210 - AluSx SINE Alu -180 133 43 261 358 84 28 chr5 3425135 3425314 -199660218 + L3 LINE CR1 1246 1434 -143 897 211 40 44 chr5 3425636 3425863 -199659669 - ORSL DNA AcHobo -14 261 36 331 307 35 9 chr5 3427117 3427231 -199658301 - L1M4 LINE L1 -846 5798 5682 533 267 87 46 chr5 3427267 3427353 -199658179 - L1MEc LINE L1 -1784 4860 4779 1828 163 0 0 chr5 3427353 3427653 -199657879 - AluSx SINE Alu -12 300 1 533 267 87 46 chr5 3427653 3427761 -199657771 - L1MEc LINE L1 -1865 4779 4658 319 295 27 54 chr5 3427793 3428129 -199657403 - L1MEc LINE L1 -2063 4581 4255 619 244 93 136 chr5 3428135 3428396 -199657136 - L1MEc LINE L1 -2610 4034 3764 222 37 0 0 chr5 3428396 3428423 -199657109 + (TC)n Simple_repeat Simple_repeat 2 28 0 619 244 93 136 chr5 3428423 3428783 -199656749 - L1MEc LINE L1 -2880 3764 3472 4313 56 9 0 chr5 3428783 3429321 -199656211 + L1PA5 LINE L1 5612 6154 0 619 244 93 136 chr5 3429321 3429746 -199655786 - L1MEc LINE L1 -3172 3472 3031 1834 138 17 3 chr5 3429746 3430035 -199655497 + AluSq SINE Alu 1 293 -20 857 232 103 21 chr5 3430141 3430520 -199655012 - L1MEc LINE L1 -3940 2706 2297 1226 198 154 31 chr5 3430636 3430954 -199654578 - MLT1A1 LTR MaLR 0 365 9 357 144 36 18 chr5 3430954 3431065 -199654467 + (TA)n Simple_repeat Simple_repeat 2 114 0 5172 249 46 36 chr5 3431065 3433115 -199652417 - L1M4 LINE L1 -4565 2081 5 242 264 100 27 chr5 3433133 3433243 -199652289 - L1MEc LINE L1 -4766 2059 1942 284 298 53 11 chr5 3433389 3433483 -199652049 + MER20B DNA MER1_type 62 159 -624 2105 111 0 0 chr5 3435624 3435922 -199649610 + AluSg SINE Alu 1 298 -12 295 245 11 21 chr5 3437386 3437480 -199648052 + CT-rich Low_complexity Low_complexity 2 94 0 1085 239 77 11 chr5 3438749 3439100 -199646432 + MLT1A2 LTR MaLR 1 374 0 623 254 172 67 chr5 3439226 3439674 -199645858 - L1ME4a LINE L1 -6 6115 5621 2258 92 7 0 chr5 3441753 3442059 -199643473 - AluY SINE Alu -3 308 1 407 348 13 25 chr5 3442191 3442349 -199643183 - MIR SINE MIR -52 210 55 677 251 67 5 chr5 3442394 3442589 -199642943 - MER20 DNA MER1_type -5 214 8 187 255 0 43 chr5 3442876 3442923 -199642609 + L3 LINE CR1 642 686 -891 2506 96 19 25 chr5 3443342 3443708 -199641824 + THE1B LTR MaLR 1 364 0 253 260 53 60 chr5 3444012 3444162 -199641370 - MIR SINE MIR -54 208 60 27 0 0 0 chr5 3445807 3445834 -199639698 + AT_rich Low_complexity Low_complexity 1 27 0 1260 206 29 29 chr5 3450054 3450399 -199635133 - MLT1C LTR MaLR -42 425 81 243 269 0 0 chr5 3450573 3450703 -199634829 + (CA)n Simple_repeat Simple_repeat 1 130 0 183 184 0 0 chr5 3450721 3450759 -199634773 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 * 282 292 0 0 chr5 3450732 3450910 -199634622 + (CA)n Simple_repeat Simple_repeat 1 178 0 435 38 0 0 chr5 3452161 3452214 -199633318 + (TG)n Simple_repeat Simple_repeat 2 54 0 237 33 0 0 chr5 3454285 3454315 -199631217 + (CA)n Simple_repeat Simple_repeat 1 30 0 285 81 0 0 chr5 3455579 3455616 -199629916 - tRNA-Gly-GGA tRNA tRNA -38 37 1 720 176 0 2 chr5 3456033 3456639 -199628893 + (TG)n Simple_repeat Simple_repeat 1 604 0 725 150 0 6 chr5 3456658 3456825 -199628707 + (TG)n Simple_repeat Simple_repeat 2 167 0 328 267 19 0 chr5 3457631 3457736 -199627796 - L2 LINE L2 -8 3305 3199 30 27 0 0 chr5 3457819 3457856 -199627676 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr5 3458095 3458123 -199627409 + AT_rich Low_complexity Low_complexity 1 28 0 278 213 16 16 chr5 3458372 3458433 -199627099 + MER81 DNA DNA 54 114 0 238 327 89 12 chr5 3458822 3459070 -199626462 + L1M4 LINE L1 4949 5215 -931 1010 209 87 0 chr5 3459602 3459798 -199625734 + MER58A DNA MER1_type 1 213 -11 1881 194 65 7 chr5 3460494 3460897 -199624635 + MER95 LTR ERV 6 431 0 412 283 62 24 chr5 3461086 3461480 -199624052 - LTR16A LTR ERVL -1 449 2 2138 138 0 0 chr5 3462102 3462400 -199623132 + AluSx SINE Alu 1 298 -14 247 241 0 0 chr5 3462592 3462646 -199622886 - L1M4 LINE L1 -1324 4822 4769 2220 95 20 10 chr5 3464098 3464394 -199621138 + AluSq SINE Alu 1 299 -14 2522 61 0 26 chr5 3464416 3464727 -199620805 - AluY SINE Alu -7 304 2 192 135 0 0 chr5 3464879 3464916 -199620616 + (TG)n Simple_repeat Simple_repeat 1 37 0 214 378 33 0 chr5 3465034 3465185 -199620347 - L3 LINE CR1 -864 713 558 2379 73 7 3 chr5 3466028 3466328 -199619204 + AluY SINE Alu 1 301 -10 1117 243 49 27 chr5 3467796 3468163 -199617369 - MER96B DNA MER1_type? -4 413 39 435 240 21 0 chr5 3468163 3468259 -199617273 + MLT1C LTR MaLR 1 98 -369 2103 197 47 11 chr5 3468259 3468731 -199616801 + L1MA6 LINE L1 5483 5971 -329 258 81 0 0 chr5 3469361 3469398 -199616134 + (TG)n Simple_repeat Simple_repeat 2 38 0 1417 225 38 3 chr5 3472847 3473194 -199612338 - L1MB4 LINE L1 -1 6179 5821 848 169 6 0 chr5 3474211 3474389 -199611143 + (ATG)n Simple_repeat Simple_repeat 2 180 0 737 202 6 0 chr5 3474420 3474778 -199610754 + (ATG)n Simple_repeat Simple_repeat 1 360 0 213 196 0 0 chr5 3474794 3474840 -199610692 + (ATG)n Simple_repeat Simple_repeat 1 46 0 230 0 33 0 chr5 3476897 3476927 -199608605 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 350 259 95 41 chr5 3477205 3477481 -199608051 + L1ME LINE L1 958 1260 -5156 2496 38 10 0 chr5 3477481 3477773 -199607759 + AluY SINE Alu 1 295 -16 350 259 95 41 chr5 3477773 3477863 -199607669 + L1ME LINE L1 1260 1344 -5072 240 188 50 38 chr5 3477864 3477944 -199607588 + L1ME LINE L1 1247 1327 -5099 2094 143 10 0 chr5 3479883 3480177 -199605355 + AluSx SINE Alu 1 297 -15 186 43 0 0 chr5 3483960 3483983 -199601549 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 416 259 131 27 chr5 3485634 3485667 -199599865 - MER5C DNA MER1_type 0 324 296 362 21 21 0 chr5 3485667 3485714 -199599818 + (TG)n Simple_repeat Simple_repeat 2 49 0 416 259 131 27 chr5 3485714 3485939 -199599593 - MER5C DNA MER1_type -28 296 39 234 260 65 53 chr5 3487239 3487395 -199598137 + MIR3 SINE MIR 4 159 -63 342 315 100 0 chr5 3487784 3487914 -199597618 + MIR3 SINE MIR 18 160 -48 217 217 0 0 chr5 3489611 3489657 -199595875 - L2 LINE L2 -1 3312 3267 25 65 0 0 chr5 3490218 3490264 -199595268 + AT_rich Low_complexity Low_complexity 1 46 0 4815 254 91 25 chr5 3490335 3492367 -199593165 + L1ME LINE L1 2358 4476 -1950 468 287 134 18 chr5 3493487 3493710 -199591822 - MIR SINE MIR 0 262 14 1861 127 0 0 chr5 3493863 3494108 -199591424 - AluSq SINE Alu -64 249 5 2127 120 0 13 chr5 3494762 3495071 -199590461 - AluSx SINE Alu -7 305 1 3939 166 22 40 chr5 3497098 3497881 -199587651 - LTR1 LTR ERV1 0 785 17 186 71 0 0 chr5 3499641 3499669 -199585863 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 614 229 32 0 chr5 3499795 3499982 -199585550 - L1MB3 LINE L1 -219 5952 5747 2034 137 0 16 chr5 3500008 3500315 -199585217 + AluSc SINE Alu 1 302 -7 557 118 0 0 chr5 3500233 3500318 -199585214 + AluSc SINE Alu 221 305 -4 2268 177 46 15 chr5 3506067 3506542 -199578990 - L1M2 LINE L1 -500 5812 5323 457 244 105 26 chr5 3506560 3506868 -199578664 - L1MCa LINE L1 -3862 2564 2221 1870 140 58 0 chr5 3506868 3506984 -199578548 + AluSx SINE Alu 2 110 -202 222 37 0 0 chr5 3506984 3507011 -199578521 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 1870 140 58 0 chr5 3507011 3507172 -199578360 + AluSx SINE Alu 110 295 -17 457 244 105 26 chr5 3507172 3507244 -199578288 - L1MCa LINE L1 -4205 2221 2156 317 260 135 10 chr5 3507245 3507349 -199578183 - L1 LINE L1 -944 5202 5086 834 179 5 58 chr5 3507354 3507454 -199578078 + L1 LINE L1 5171 5275 -871 2034 152 10 0 chr5 3507454 3507751 -199577781 + AluSx SINE Alu 1 300 -12 834 179 5 58 chr5 3507751 3507873 -199577659 + L1 LINE L1 5275 5381 -765 1803 163 30 3 chr5 3507873 3508205 -199577327 - MER6 DNA MER2_type 0 865 265 466 248 185 57 chr5 3508205 3508243 -199577289 - L1MCa LINE L1 -5992 434 402 1376 158 153 78 chr5 3508243 3508590 -199576942 + THE1C LTR MaLR 1 373 -2 466 248 185 57 chr5 3508590 3508918 -199576614 - L1MCa LINE L1 -6024 402 21 1986 144 48 17 chr5 3508987 3509342 -199576190 + MER47A DNA MER2_type 1 366 0 186 43 0 0 chr5 3509806 3509829 -199575703 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2154 107 0 0 chr5 3509831 3510103 -199575429 - AluSc SINE Alu -37 272 1 2197 132 28 25 chr5 3511130 3511485 -199574047 - THE1B LTR MaLR 0 364 9 11455 94 19 11 chr5 3511493 3512823 -199572709 - THE1B-int LTR MaLR 0 1580 235 2221 79 0 0 chr5 3512823 3513090 -199572442 - AluY SINE Alu -18 293 27 11455 94 19 11 chr5 3513090 3513327 -199572205 - THE1B-int LTR MaLR -1345 235 1 2407 123 36 22 chr5 3513328 3513686 -199571846 - THE1B LTR MaLR -1 363 1 222 91 0 0 chr5 3515544 3515577 -199569955 + (TCC)n Simple_repeat Simple_repeat 2 34 0 319 111 0 0 chr5 3516544 3516589 -199568943 - THE1B LTR MaLR 0 428 384 1012 87 24 0 chr5 3516589 3516716 -199568816 + AluSq/x SINE Alu 1 130 -182 204 326 84 0 chr5 3517342 3517437 -199568095 + MER5A DNA MER1_type 4 106 -83 182 320 100 10 chr5 3518212 3518312 -199567220 + L2 LINE L2 3150 3258 -14 418 226 0 57 chr5 3518412 3518536 -199566996 - MIR SINE MIR -56 206 90 242 265 39 29 chr5 3521098 3521200 -199564332 + HAL1 LINE L1 769 871 -1636 531 250 5 75 chr5 3521200 3521412 -199564120 + MER3 DNA MER1_type 13 209 0 368 367 29 0 chr5 3521447 3521586 -199563946 + HAL1 LINE L1 1678 1820 -687 442 207 8 43 chr5 3521632 3521898 -199563634 + GA-rich Low_complexity Low_complexity 1 256 0 215 77 0 26 chr5 3522017 3522056 -199563476 + (TG)n Simple_repeat Simple_repeat 2 39 0 276 209 88 0 chr5 3522432 3522523 -199563009 + MER5A DNA MER1_type 26 124 -65 476 296 110 36 chr5 3524443 3525146 -199560386 - L2 LINE L2 -188 3125 2370 289 271 74 25 chr5 3528841 3528963 -199556569 - LTR68 LTR ERV1 -606 134 7 185 0 0 39 chr5 3530202 3530228 -199555304 + (CAGA)n Simple_repeat Simple_repeat 1 25 0 1538 214 30 32 chr5 3532597 3532970 -199552562 + MLT1A2 LTR MaLR 3 374 0 432 245 91 22 chr5 3533011 3533211 -199552321 - MLT1H LTR MaLR -294 255 1 4781 201 49 19 chr5 3533255 3533847 -199551685 - L1MC2 LINE L1 -9 6335 5762 2044 128 34 0 chr5 3533847 3534143 -199551389 + AluSx SINE Alu 1 306 -6 4781 201 49 19 chr5 3534143 3534851 -199550681 - L1MC2 LINE L1 -582 5762 4985 527 248 14 7 chr5 3534878 3535019 -199550513 - MER69A DNA AcHobo -33 144 3 513 0 0 0 chr5 3536281 3536338 -199549194 + (TC)n Simple_repeat Simple_repeat 2 58 0 375 23 0 0 chr5 3536337 3536381 -199549151 + (TA)n Simple_repeat Simple_repeat 1 44 0 * 2437 149 19 9 chr5 3536389 3536708 -199548824 - L1PA16 LINE L1 -21 6145 5820 2375 138 5 22 chr5 3536708 3537078 -199548454 + THE1B LTR MaLR 1 364 0 2437 149 19 9 chr5 3537078 3537180 -199548352 - L1PA16 LINE L1 -346 5820 5720 1837 105 23 11 chr5 3539135 3539401 -199546131 - AluSq SINE Alu -12 301 33 183 186 0 0 chr5 3540826 3540869 -199544663 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 3535 80 2 0 chr5 3540899 3541360 -199544172 + L1PA5 LINE L1 5691 6152 -2 2581 83 9 0 chr5 3541360 3541701 -199543831 + L1PA8 LINE L1 5814 6166 -6 424 343 17 14 chr5 3544884 3545249 -199540283 + (TG)n Simple_repeat Simple_repeat 1 366 0 267 208 60 77 chr5 3545202 3545385 -199540147 + (CATG)n Simple_repeat Simple_repeat 1 180 0 * 345 331 23 17 chr5 3545362 3545534 -199539998 + (TG)n Simple_repeat Simple_repeat 2 174 0 2193 104 0 7 chr5 3546584 3546906 -199538626 - AluSq SINE Alu 0 313 1 399 188 12 47 chr5 3547304 3547389 -199538143 - MER5A DNA MER1_type -83 106 25 277 346 115 6 chr5 3548181 3548337 -199537195 - MER5B DNA MER1_type -3 175 3 202 196 39 0 chr5 3548897 3548948 -199536584 + A-rich Low_complexity Low_complexity 4 56 0 2978 266 31 35 chr5 3549390 3550950 -199534582 + L1MA7 LINE L1 1 1672 -4609 9412 201 44 10 chr5 3550953 3553496 -199532036 + L1MA7 LINE L1 2902 5608 -771 1914 170 40 37 chr5 3553496 3553897 -199531635 + L1MA7 LINE L1 6094 6495 0 9412 201 44 10 chr5 3553897 3553915 -199531617 + L1MA7 LINE L1 5608 5624 -755 199 269 30 0 chr5 3554168 3554235 -199531297 - L2 LINE L2 -219 3053 2985 284 317 45 60 chr5 3554659 3555012 -199530520 - L2 LINE L2 -927 2387 2040 243 261 0 14 chr5 3555320 3555389 -199530143 + GA-rich Low_complexity Low_complexity 2 69 0 361 301 120 32 chr5 3556160 3556376 -199529156 - MIR SINE MIR -6 256 22 2047 248 70 14 chr5 3556414 3556971 -199528561 - MLT1E LTR MaLR -5 588 1 726 148 22 44 chr5 3557241 3557376 -199528156 - FLAM_C SINE Alu -10 133 2 216 234 0 0 chr5 3559465 3559512 -199526020 - L2 LINE L2 -7 3265 3219 215 91 0 23 chr5 3562232 3562276 -199523256 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1159 244 75 49 chr5 3562616 3563067 -199522465 - MLT1C LTR MaLR -4 463 1 235 248 91 25 chr5 3563163 3563284 -199522248 - L1M4 LINE L1 -1528 4854 4726 698 160 92 23 chr5 3563332 3563463 -199522069 + THE1C LTR MaLR 1 140 -235 2847 174 8 4 chr5 3563490 3564001 -199521531 + HSMAR2 DNA Mariner 169 681 -621 228 117 33 17 chr5 3564065 3564125 -199521407 + (TA)n Simple_repeat Simple_repeat 2 62 0 998 215 59 19 chr5 3564149 3564405 -199521127 - L1MA9 LINE L1 -39 6273 6008 * 1598 276 82 68 chr5 3564402 3565014 -199520518 - L1M4 LINE L1 -3884 2500 1898 1991 142 0 4 chr5 3565014 3565295 -199520237 + AluSx SINE Alu 3 282 -30 1598 276 82 68 chr5 3565295 3565857 -199519675 - L1M4 LINE L1 -4486 1898 1345 2008 154 0 0 chr5 3565857 3566150 -199519382 - AluSx SINE Alu -19 293 1 1598 276 82 68 chr5 3566150 3566704 -199518828 - L1M4 LINE L1 -5039 1345 747 6756 253 67 12 chr5 3567274 3568872 -199516660 + L1PA13 LINE L1 1 1685 -5896 8504 229 27 21 chr5 3568897 3571124 -199514408 + L1PA13 LINE L1 2473 4723 -2861 2230 119 0 6 chr5 3571124 3571436 -199514096 + AluSx SINE Alu 1 310 -2 8504 229 27 21 chr5 3571436 3571750 -199513782 + L1PA13 LINE L1 4723 5034 -2550 8453 196 16 10 chr5 3571772 3574247 -199511285 + L1PA13 LINE L1 5120 7601 0 261 266 25 0 chr5 3575245 3575324 -199510208 + MIR SINE MIR 72 152 -56 1628 224 83 25 chr5 3576443 3576889 -199508643 - MER63C DNA MER1_type -213 717 246 1450 214 31 13 chr5 3578185 3578568 -199506964 + MLT1B LTR MaLR 1 390 0 410 284 14 20 chr5 3581450 3581598 -199503934 + (CATA)n Simple_repeat Simple_repeat 4 150 0 359 339 6 22 chr5 3581548 3581731 -199503801 + (CA)n Simple_repeat Simple_repeat 1 180 0 * 408 328 0 23 chr5 3581743 3581914 -199503618 + (CA)n Simple_repeat Simple_repeat 2 168 0 2374 83 47 39 chr5 3581963 3582324 -199503208 + THE1B LTR MaLR 1 364 0 879 217 77 5 chr5 3582708 3582929 -199502603 + MLT1A1 LTR MaLR 129 365 0 23 0 0 0 chr5 3583637 3583660 -199501872 + AT_rich Low_complexity Low_complexity 1 23 0 548 261 22 0 chr5 3583843 3583981 -199501551 + MER58A DNA MER1_type 37 177 -47 305 221 132 42 chr5 3584654 3584844 -199500688 + LTR33A LTR ERVL 268 474 -49 1378 193 27 24 chr5 3587391 3587687 -199497845 + AluJo SINE Alu 1 297 -15 375 328 8 0 chr5 3587695 3587829 -199497703 - HAL1 LINE L1 -125 2382 2248 267 31 0 0 chr5 3587854 3587886 -199497646 + (CA)n Simple_repeat Simple_repeat 1 32 0 486 270 0 0 chr5 3589311 3589489 -199496043 + (CA)n Simple_repeat Simple_repeat 2 179 0 1999 138 165 8 chr5 3590632 3591002 -199494530 + MSTA LTR MaLR 1 428 0 1000 154 32 6 chr5 3591030 3591186 -199494346 + FRAM SINE Alu 1 157 -19 2162 123 0 3 chr5 3591345 3591645 -199493887 - AluSc SINE Alu -9 300 2 198 311 75 81 chr5 3591978 3592139 -199493393 + L3b LINE CR1 1344 1503 -80 2302 118 52 6 chr5 3593072 3593420 -199492112 - THE1B LTR MaLR 0 364 1 1995 55 4 12 chr5 3595319 3595574 -199489958 - L1P3 LINE L1 -533 5621 5369 1450 98 0 0 chr5 3595574 3595767 -199489765 + L1PA7 LINE L1 5960 6153 -1 4453 209 120 72 chr5 3596092 3598464 -199487068 + L1MD1 LINE L1 19 2277 -4263 1524 184 29 7 chr5 3598464 3598741 -199486791 + AluJb SINE Alu 3 285 -27 225 65 0 0 chr5 3598748 3598779 -199486753 + (CATA)n Simple_repeat Simple_repeat 2 32 0 4453 209 120 72 chr5 3598779 3598871 -199486661 + L1MD1 LINE L1 2282 2680 -3860 3449 211 65 59 chr5 3598879 3599920 -199485612 + L1MD1 LINE L1 4974 6008 -628 2413 68 0 7 chr5 3599920 3600237 -199485295 - AluY SINE Alu 0 311 2 3449 211 65 59 chr5 3600237 3600264 -199485268 + L1MD1 LINE L1 6008 6033 -603 2220 177 32 20 chr5 3600264 3600523 -199485009 - MER65A LTR ERV1 0 445 177 315 0 0 0 chr5 3600523 3600558 -199484974 + (TG)n Simple_repeat Simple_repeat 1 35 0 2220 177 32 20 chr5 3600558 3600738 -199484794 - MER65A LTR ERV1 -268 177 1 3449 211 65 59 chr5 3600738 3601230 -199484302 + L1MD1 LINE L1 6033 6531 -105 2720 30 7 0 chr5 3601230 3601532 -199484000 + AluY SINE Alu 1 304 -7 3449 211 65 59 chr5 3601532 3601590 -199483942 + L1MD1 LINE L1 6531 6587 -49 210 37 0 0 chr5 3602784 3602811 -199482721 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 216 0 0 0 chr5 3602810 3602834 -199482698 + (GA)n Simple_repeat Simple_repeat 2 25 0 323 163 12 0 chr5 3602933 3603013 -199482519 + (CA)n Simple_repeat Simple_repeat 2 82 0 213 204 23 23 chr5 3603032 3603120 -199482412 + (CA)n Simple_repeat Simple_repeat 2 89 0 672 252 9 51 chr5 3603683 3603897 -199481635 - MER101 LTR ERV1 -19 455 251 405 248 152 21 chr5 3604069 3604214 -199481318 - MER101 LTR ERV1 -302 172 9 421 213 31 55 chr5 3604473 3604600 -199480932 - MER5A DNA MER1_type -2 187 64 2384 100 3 0 chr5 3604828 3605129 -199480403 - AluSx SINE Alu -10 302 1 2440 70 0 13 chr5 3605558 3605859 -199479673 + AluY SINE Alu 1 297 -14 771 251 26 11 chr5 3606957 3607148 -199478384 + MLT1B LTR MaLR 195 388 -2 312 27 0 0 chr5 3608020 3608057 -199477475 + (TG)n Simple_repeat Simple_repeat 1 37 0 2199 112 6 34 chr5 3608553 3608874 -199476658 - AluSx SINE Alu 0 312 1 327 226 13 7 chr5 3612531 3612686 -199472846 + GA-rich Low_complexity Low_complexity 1 156 0 184 333 69 0 chr5 3613943 3614015 -199471517 + MIR SINE MIR 116 192 -70 318 204 68 116 chr5 3615726 3615873 -199469659 - MLT1B LTR MaLR -246 144 5 318 296 99 62 chr5 3617112 3617355 -199468177 + L1MC/D LINE L1 5456 5707 -2101 520 244 125 0 chr5 3618078 3618238 -199467294 + MER31B LTR ERV1 2 181 -285 1135 233 94 36 chr5 3618648 3619086 -199466446 + MER101 LTR ERV1 12 474 0 5239 149 18 6 chr5 3620713 3621942 -199463590 - L1PA15 LINE L1 -21 6144 4902 1245 193 7 15 chr5 3621933 3622203 -199463329 + L1PA15 LINE L1 4619 4886 -1260 * 459 174 6 56 chr5 3623464 3623642 -199461890 + GA-rich Low_complexity Low_complexity 1 169 0 2316 91 7 0 chr5 3623652 3623950 -199461582 + AluSq SINE Alu 13 312 -1 200 260 100 0 chr5 3624243 3624293 -199461239 - MER5A DNA MER1_type -5 184 130 1614 180 4 0 chr5 3624483 3624795 -199460737 - AluJb SINE Alu 0 312 33 1899 171 84 3 chr5 3625041 3625432 -199460100 + MSTB LTR MaLR 4 426 0 2398 237 33 32 chr5 3627175 3627867 -199457665 + L1MD2 LINE L1 5473 6165 -194 248 320 21 10 chr5 3627871 3627968 -199457564 + (CA)n Simple_repeat Simple_repeat 1 98 0 473 302 0 39 chr5 3627985 3628167 -199457365 + (CA)n Simple_repeat Simple_repeat 1 175 0 375 197 26 0 chr5 3628172 3628248 -199457284 + L1MD2 LINE L1 6139 6216 -143 291 296 61 0 chr5 3628356 3628471 -199457061 + L1MD2 LINE L1 6230 6351 -8 1838 134 3 24 chr5 3628477 3628768 -199456764 - AluSg1 SINE Alu -14 295 11 804 216 0 2 chr5 3632740 3633192 -199452340 + (CCCA)n Simple_repeat Simple_repeat 1 450 0 318 204 68 116 chr5 3635058 3635205 -199450327 - MLT1B LTR MaLR -246 144 5 324 298 99 58 chr5 3636444 3636686 -199448846 + L1MC/D LINE L1 5456 5707 -2101 520 244 125 0 chr5 3637409 3637569 -199447963 + MER31B LTR ERV1 2 181 -285 1135 233 94 36 chr5 3637979 3638417 -199447115 + MER101 LTR ERV1 12 474 0 5309 149 16 6 chr5 3640045 3641276 -199444256 - L1PA15 LINE L1 -21 6144 4902 1245 193 7 15 chr5 3641267 3641537 -199443995 + L1PA15 LINE L1 4619 4886 -1260 * 463 209 19 19 chr5 3642796 3642954 -199442578 + A-rich Low_complexity Low_complexity 5 162 0 225 233 0 50 chr5 3642955 3642987 -199442545 + GA-rich Low_complexity Low_complexity 4 33 -27 2316 91 7 0 chr5 3642987 3643285 -199442247 + AluSq SINE Alu 13 312 -1 225 233 0 50 chr5 3643285 3643312 -199442220 + GA-rich Low_complexity Low_complexity 33 60 0 200 260 100 0 chr5 3643578 3643628 -199441904 - MER5A DNA MER1_type -5 184 130 1614 180 4 0 chr5 3643818 3644130 -199441402 - AluJb SINE Alu 0 312 33 1899 171 84 3 chr5 3644376 3644767 -199440765 + MSTB LTR MaLR 4 426 0 2425 234 33 32 chr5 3646510 3647202 -199438330 + L1MD2 LINE L1 5473 6165 -194 237 320 21 10 chr5 3647206 3647303 -199438229 + (CA)n Simple_repeat Simple_repeat 1 98 0 441 311 0 39 chr5 3647320 3647500 -199438032 + (CA)n Simple_repeat Simple_repeat 1 173 0 382 197 26 0 chr5 3647505 3647581 -199437951 + L1MD2 LINE L1 6139 6216 -143 319 278 61 0 chr5 3647689 3647804 -199437728 + L1MD2 LINE L1 6230 6351 -8 1798 132 3 31 chr5 3647810 3648099 -199437433 - AluSg1 SINE Alu -18 291 11 803 196 0 6 chr5 3652070 3652249 -199433283 + (CCCA)n Simple_repeat Simple_repeat 1 178 0 219 300 17 0 chr5 3652249 3652309 -199433223 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 330 106 0 0 chr5 3654607 3654654 -199430878 + Alu SINE Alu 1 47 -261 354 128 0 0 chr5 3654666 3654729 -199430803 + Alu SINE Alu 1 47 -255 2209 92 7 0 chr5 3654755 3655038 -199430494 + AluSx SINE Alu 1 285 -27 222 274 186 18 chr5 3655948 3656061 -199429471 + MIR SINE MIR 13 144 -118 2176 133 0 0 chr5 3656687 3656988 -199428544 + AluSg SINE Alu 1 301 -9 2838 110 19 19 chr5 3657931 3658357 -199427175 + L1PA11 LINE L1 5746 6171 -3 550 194 10 0 chr5 3658378 3658476 -199427056 + FLAM_A SINE Alu 12 110 -32 309 26 0 0 chr5 3658478 3658516 -199427016 + (TC)n Simple_repeat Simple_repeat 1 38 0 378 107 0 0 chr5 3658518 3658574 -199426958 + (GGA)n Simple_repeat Simple_repeat 3 58 0 317 237 13 0 chr5 3660006 3660082 -199425450 + MER103 DNA DNA 8 84 -82 462 274 7 28 chr5 3660722 3660930 -199424602 + C-rich Low_complexity Low_complexity 1 203 0 714 226 73 29 chr5 3662334 3662649 -199422883 + MLT1A1 LTR MaLR 4 354 -36 25 0 0 0 chr5 3663259 3663284 -199422248 + AT_rich Low_complexity Low_complexity 1 25 0 2272 112 128 13 chr5 3663669 3664053 -199421479 - MSTA LTR MaLR 0 428 1 23 54 0 0 chr5 3664185 3664222 -199421310 + AT_rich Low_complexity Low_complexity 1 37 0 1988 211 42 68 chr5 3664340 3664984 -199420548 - MER63C DNA MER1_type -303 627 1 329 335 62 40 chr5 3664987 3665163 -199420369 + L1M4 LINE L1 3742 3921 -2225 277 261 23 0 chr5 3665610 3665698 -199419834 + L1M4 LINE L1 4137 4226 -1920 2316 109 0 6 chr5 3666089 3666402 -199419130 - AluSq SINE Alu -2 311 1 228 143 0 0 chr5 3666425 3666467 -199419065 + (T)n Simple_repeat Simple_repeat 1 42 0 21 36 0 0 chr5 3666880 3666908 -199418624 + AT_rich Low_complexity Low_complexity 1 28 0 299 276 57 57 chr5 3667340 3667452 -199418080 - L1ME4a LINE L1 -158 5963 5852 4839 95 6 13 chr5 3667452 3668139 -199417393 - L1PA8A LINE L1 -4 6127 5446 299 276 57 57 chr5 3668139 3668309 -199417223 - L1ME4a LINE L1 -268 5853 5681 23 0 0 0 chr5 3669056 3669079 -199416453 + AT_rich Low_complexity Low_complexity 1 23 0 200 309 0 0 chr5 3669455 3669552 -199415980 + (GGATG)n Simple_repeat Simple_repeat 1 97 0 399 41 0 0 chr5 3670055 3670104 -199415428 + (GA)n Simple_repeat Simple_repeat 2 50 0 231 245 0 0 chr5 3673134 3673228 -199412304 + (CA)n Simple_repeat Simple_repeat 2 95 0 558 246 2 0 chr5 3676090 3676673 -199408859 + (CA)n Simple_repeat Simple_repeat 1 584 0 247 237 0 0 chr5 3676800 3676859 -199408673 + (TG)n Simple_repeat Simple_repeat 2 60 0 310 274 11 11 chr5 3676860 3676955 -199408577 + (CA)n Simple_repeat Simple_repeat 2 96 0 225 322 35 0 chr5 3676974 3677061 -199408471 + MIR3 SINE MIR 82 171 -37 357 187 0 0 chr5 3677188 3677263 -199408269 + (CA)n Simple_repeat Simple_repeat 1 75 0 201 241 0 0 chr5 3677336 3677390 -199408142 + (CA)n Simple_repeat Simple_repeat 1 54 0 231 356 11 0 chr5 3677542 3677632 -199407900 + (CACG)n Simple_repeat Simple_repeat 1 91 0 210 286 0 18 chr5 3677943 3677999 -199407533 + GA-rich Low_complexity Low_complexity 2 56 0 32 75 0 0 chr5 3678167 3678234 -199407298 + AT_rich Low_complexity Low_complexity 1 67 0 303 28 0 0 chr5 3678701 3678737 -199406795 + (CA)n Simple_repeat Simple_repeat 1 36 0 263 272 54 17 chr5 3680807 3681065 -199404467 + MLT1A1 LTR MaLR 48 363 -11 203 333 29 0 chr5 3683820 3683889 -199401643 - L2 LINE L2 -16 3297 3227 1534 253 98 48 chr5 3684242 3684826 -199400706 + L1MCb LINE L1 717 1270 -5475 405 0 0 0 chr5 3684826 3684871 -199400661 + (CA)n Simple_repeat Simple_repeat 2 46 0 1534 253 98 48 chr5 3684871 3685938 -199399594 + L1MCb LINE L1 1270 2732 -4013 323 135 0 0 chr5 3685964 3686016 -199399516 - MLT2B1 LTR ERVL 0 520 469 305 258 32 21 chr5 3686041 3686134 -199399398 + L1MC4 LINE L1 6615 6708 -1334 * 315 178 19 122 chr5 3686094 3686201 -199399331 - L1MC4 LINE L1 -1333 6709 6614 12075 85 14 12 chr5 3686366 3688045 -199397487 - HERVL LTR ERVL -429 5225 3545 456 326 63 40 chr5 3688069 3688612 -199396920 + L1MEc LINE L1 1714 2268 -4128 1073 149 5 0 chr5 3688732 3688933 -199396599 - L1P LINE L1 -3603 2543 2342 7545 194 9 32 chr5 3688934 3691269 -199394263 + L1PA14 LINE L1 3813 6159 -2 1289 130 5 9 chr5 3691269 3691484 -199394048 + L1MA4A LINE L1 5772 5985 -318 1411 126 10 0 chr5 3691536 3691734 -199393798 - AluSc SINE Alu -5 304 105 265 306 41 54 chr5 3692156 3692303 -199393229 + MIR SINE MIR 102 246 -16 280 230 10 10 chr5 3692305 3692405 -199393127 + CT-rich Low_complexity Low_complexity 3 102 0 1679 199 30 60 chr5 3692654 3693056 -199392476 + MLT1B LTR MaLR 1 390 0 275 200 0 0 chr5 3694495 3694545 -199390987 - Alu SINE Alu -250 50 1 823 205 18 0 chr5 3694545 3694716 -199390816 + L1MA4A LINE L1 6059 6232 -71 238 92 46 62 chr5 3696153 3696218 -199389314 + L1PA16 LINE L1 6100 6163 -3 1714 249 133 26 chr5 3696722 3697457 -199388075 + L1ME2 LINE L1 46 757 -5288 2326 96 3 0 chr5 3697496 3697798 -199387734 + AluSg SINE Alu 4 306 -4 222 297 47 0 chr5 3698719 3698783 -199386749 + MER5A DNA MER1_type 35 101 -88 23 0 0 0 chr5 3698836 3698859 -199386673 + AT_rich Low_complexity Low_complexity 1 23 0 187 320 126 0 chr5 3701794 3701897 -199383635 - L3 LINE CR1 -551 1026 911 355 303 123 20 chr5 3704029 3704224 -199381308 + L3 LINE CR1 773 987 -590 2116 129 3 7 chr5 3704811 3705113 -199380419 - AluSx SINE Alu -11 301 1 25 0 0 0 chr5 3706335 3706360 -199379172 + AT_rich Low_complexity Low_complexity 1 25 0 200 79 105 0 chr5 3708516 3708554 -199376978 + MER5B DNA MER1_type 3 44 -134 237 333 29 10 chr5 3711721 3711823 -199373709 - MIR SINE MIR -79 183 80 459 229 0 8 chr5 3712018 3712140 -199373392 + L1ME2 LINE L1 3131 3251 -3313 1541 262 135 18 chr5 3712153 3713185 -199372347 + L1ME2 LINE L1 4895 6043 -541 911 247 83 43 chr5 3713605 3714091 -199371441 + L1ME2 LINE L1 6032 6535 -47 198 327 101 24 chr5 3714901 3715069 -199370463 - MIR SINE MIR -73 189 9 1047 236 57 20 chr5 3715666 3715963 -199369569 - MER54B LTR ERVL 0 793 486 214 91 0 45 chr5 3717101 3717145 -199368387 + (CCCTAA)n Simple_repeat Simple_repeat 1 42 0 826 180 8 0 chr5 3717959 3718316 -199367216 + (TCCA)n Simple_repeat Simple_repeat 1 360 0 795 177 12 0 chr5 3718333 3718588 -199366944 + (TCCA)n Simple_repeat Simple_repeat 1 258 0 489 219 0 0 chr5 3718600 3718714 -199366818 + (TCCA)n Simple_repeat Simple_repeat 2 115 0 316 307 34 0 chr5 3718714 3718802 -199366730 - L2 LINE L2 0 3313 3223 23 0 0 0 chr5 3719155 3719178 -199366354 + AT_rich Low_complexity Low_complexity 1 23 0 2164 82 43 0 chr5 3720802 3721083 -199364449 + AluY SINE Alu 1 293 -18 210 203 17 17 chr5 3721981 3722040 -199363492 + GA-rich Low_complexity Low_complexity 3 61 0 227 240 91 109 chr5 3722525 3722700 -199362832 - MIR SINE MIR -25 183 1 374 91 0 0 chr5 3724488 3724543 -199360989 - MLT2A2 LTR ERVL 0 453 399 224 169 70 28 chr5 3724547 3724689 -199360843 + (TA)n Simple_repeat Simple_repeat 1 148 0 235 167 19 0 chr5 3724633 3724687 -199360845 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 2147 126 10 0 chr5 3725664 3725966 -199359566 - AluSx SINE Alu -7 305 1 427 315 34 7 chr5 3728948 3729094 -199356438 - MIR SINE MIR -46 216 67 505 259 79 41 chr5 3729264 3729689 -199355843 - MLT1D LTR MaLR -17 450 1 269 252 145 23 chr5 3730642 3730773 -199354759 + MLT1L LTR MaLR 237 419 -128 479 222 19 0 chr5 3732768 3732876 -199352656 + HY1 scRNA scRNA 1 110 -2 683 74 0 54 chr5 3733069 3733218 -199352314 + (TTAGGG)n Simple_repeat Simple_repeat 1 141 0 632 323 76 56 chr5 3733455 3733879 -199351653 + HAL1b LINE L1 4 354 -994 348 127 0 0 chr5 3733879 3733934 -199351598 + (GGAA)n Simple_repeat Simple_repeat 4 58 0 404 281 90 36 chr5 3733935 3734102 -199351430 + HAL1b LINE L1 339 514 -834 732 290 72 28 chr5 3735043 3735585 -199349947 - L1MEc LINE L1 -3207 2922 2357 2293 109 0 13 chr5 3735629 3735942 -199349590 - AluSg SINE Alu -1 309 1 665 321 79 44 chr5 3735999 3736760 -199348772 - L1MEc LINE L1 -3890 2239 1436 285 256 25 113 chr5 3736863 3737066 -199348466 - L1MEc LINE L1 -4862 1257 1073 335 224 82 112 chr5 3737067 3737263 -199348269 - L1MEc LINE L1 -5100 1019 830 621 200 0 0 chr5 3737269 3737404 -199348128 + FRAM SINE Alu 38 172 0 314 288 73 110 chr5 3737404 3737623 -199347909 - L1MEc LINE L1 -5306 813 603 23 0 0 0 chr5 3737879 3737902 -199347630 + AT_rich Low_complexity Low_complexity 1 23 0 1160 166 5 0 chr5 3737902 3738107 -199347425 - L1PB1 LINE L1 -1 6150 5945 3042 167 22 8 chr5 3738172 3739245 -199346287 + L1M1 LINE L1 4688 5780 -523 * 5877 206 8 5 chr5 3739243 3740562 -199344970 - L1P LINE L1 -2314 3832 2509 2937 92 5 2 chr5 3740662 3741087 -199344445 - L1PA7 LINE L1 -72 6082 5657 1324 42 0 12 chr5 3744042 3744208 -199341324 - L1PA5 LINE L1 -1 6153 5990 2173 30 0 0 chr5 3744208 3744472 -199341060 + L1PA5 LINE L1 5710 5973 -182 184 306 40 40 chr5 3746552 3746676 -199338856 - L2 LINE L2 -11 3261 3138 333 0 0 0 chr5 3748733 3748770 -199336762 + (T)n Simple_repeat Simple_repeat 1 37 0 8514 212 56 74 chr5 3954019 3954310 -199131222 - L1MA6 LINE L1 -237 7482 7187 892 233 165 45 chr5 3954310 3954576 -199130956 - AluJb SINE Alu -4 298 1 8514 212 56 74 chr5 3954576 3956001 -199129531 - L1MA6 LINE L1 -532 7187 5737 1793 162 7 10 chr5 3956001 3956297 -199129235 - AluSx SINE Alu -17 295 1 8514 212 56 74 chr5 3956297 3957999 -199127533 - L1MA6 LINE L1 -1982 5737 4005 1451 131 40 33 chr5 3957999 3958273 -199127259 - AluSq SINE Alu -7 306 31 8514 212 56 74 chr5 3958273 3958374 -199127158 - L1MA6 LINE L1 -3714 4005 3904 244 250 0 0 chr5 3958374 3958434 -199127098 - AluS SINE Alu -241 60 1 8514 212 56 74 chr5 3958434 3960567 -199124965 - L1MA6 LINE L1 -3815 3904 1884 258 393 28 7 chr5 3960668 3960928 -199124604 - L1M3a LINE L1 -5227 728 357 276 341 52 12 chr5 3961050 3961339 -199124193 - L1M3a LINE L1 -5196 759 541 1030 311 39 30 chr5 3961394 3961970 -199123562 - L1M3a LINE L1 -5195 760 2 254 314 161 0 chr5 3962234 3962352 -199123180 + L1MEc LINE L1 37 173 -6223 1352 296 44 2 chr5 3962748 3963204 -199122328 + LTR16C LTR ERVL 2 476 -15 819 245 61 32 chr5 3964240 3964518 -199121014 - MLT1F1 LTR MaLR 0 567 282 181 320 31 21 chr5 3964838 3964935 -199120597 + MIR3 SINE MIR 101 198 -10 732 215 55 100 chr5 3966424 3966805 -199118727 - L1MD1 LINE L1 -12 6230 5867 625 157 9 0 chr5 3967091 3967199 -199118333 - MLT1B LTR MaLR -3 387 279 1033 248 158 25 chr5 3967944 3968380 -199117152 + MLT1D LTR MaLR 12 505 0 238 343 35 14 chr5 3969228 3969371 -199116161 - MIR SINE MIR -81 181 36 477 0 0 0 chr5 3969486 3969539 -199115993 + (CA)n Simple_repeat Simple_repeat 2 54 0 261 0 0 0 chr5 3969581 3969610 -199115922 + (CA)n Simple_repeat Simple_repeat 2 30 0 333 0 0 0 chr5 3969652 3969689 -199115843 + (CA)n Simple_repeat Simple_repeat 2 38 0 225 0 0 0 chr5 3969689 3969714 -199115818 + (A)n Simple_repeat Simple_repeat 1 25 0 2469 52 0 29 chr5 3971095 3971401 -199114131 - AluY SINE Alu -14 297 1 1353 149 117 25 chr5 3971403 3971684 -199113848 - AluY SINE Alu -4 307 1 999 78 8 0 chr5 3971703 3971832 -199113700 - AluY SINE Alu -181 130 1 964 88 0 0 chr5 3972812 3972948 -199112584 + L1PA14 LINE L1 6023 6158 -3 302 257 57 9 chr5 3974957 3975062 -199110470 - MIR SINE MIR -12 250 141 21 0 0 0 chr5 3976608 3976629 -199108903 + AT_rich Low_complexity Low_complexity 1 21 0 2158 119 3 0 chr5 3977841 3978136 -199107396 - AluSx SINE Alu -16 296 1 231 217 0 0 chr5 3979380 3979440 -199106092 + (CA)n Simple_repeat Simple_repeat 2 61 0 213 310 0 49 chr5 3979926 3980110 -199105422 + G-rich Low_complexity Low_complexity 2 176 0 239 231 52 35 chr5 3980189 3980362 -199105170 + (GGGTG)n Simple_repeat Simple_repeat 5 180 0 394 144 0 76 chr5 3980655 3980773 -199104759 + AluSq/x SINE Alu 8 116 -187 25 65 0 0 chr5 3984206 3984252 -199101280 + AT_rich Low_complexity Low_complexity 1 46 0 315 0 0 0 chr5 3984818 3984853 -199100679 + (CA)n Simple_repeat Simple_repeat 2 36 0 262 214 230 16 chr5 3985424 3985550 -199099982 - MIR SINE MIR -43 219 67 2415 81 0 0 chr5 3985955 3986252 -199099280 - AluY SINE Alu -14 297 1 267 286 36 27 chr5 3987071 3987183 -199098349 + MIR SINE MIR 17 129 -133 2222 120 10 0 chr5 3987209 3987517 -199098015 - AluSp SINE Alu -2 311 1 218 245 0 0 chr5 3988462 3988511 -199097021 - MIR SINE MIR -13 249 201 358 298 8 8 chr5 3988866 3988990 -199096542 - MER5B DNA MER1_type -49 129 6 5648 182 56 10 chr5 3990206 3990725 -199094807 + Tigger3b DNA MER2_type 13 507 -2521 180 0 0 0 chr5 3990725 3990745 -199094787 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 5648 182 56 10 chr5 3990745 3990766 -199094766 + Tigger3b DNA MER2_type 507 526 -2502 2350 119 0 0 chr5 3990766 3991078 -199094454 + AluSx SINE Alu 1 312 0 5648 182 56 10 chr5 3991078 3991702 -199093830 + Tigger3b DNA MER2_type 526 1231 0 1619 46 0 0 chr5 3992037 3992234 -199093298 - L1PA5 LINE L1 0 6154 5958 291 252 84 35 chr5 3992261 3992404 -199093128 - L1ME LINE L1 -450 5671 5522 27 0 0 0 chr5 3992601 3992628 -199092904 + AT_rich Low_complexity Low_complexity 1 27 0 199 239 0 0 chr5 3993312 3993358 -199092174 - MIR SINE MIR -111 151 106 7435 156 26 2 chr5 3993555 3995543 -199089989 - L1PA14 LINE L1 -214 5947 3919 200 83 0 28 chr5 3995543 3995579 -199089953 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 7067 26 0 1 chr5 3995579 3996386 -199089146 - L1PA3 LINE L1 -24 6131 5326 6487 34 0 0 chr5 3996383 3997157 -199088375 + L1PA3 LINE L1 4559 5332 -814 * 3957 167 17 21 chr5 3997151 3997344 -199088188 - L1PA14 LINE L1 -2221 3925 3733 * 2295 100 7 0 chr5 3997344 3997643 -199087889 - AluSg SINE Alu -9 301 1 3957 167 17 21 chr5 3997643 3998197 -199087335 - L1PA14 LINE L1 -2413 3733 3181 314 264 241 62 chr5 3998310 3999005 -199086527 - L1M2 LINE L1 -4300 2096 1297 234 0 0 0 chr5 3999169 3999195 -199086337 + (CA)n Simple_repeat Simple_repeat 2 27 0 308 286 52 28 chr5 3999288 3999536 -199085996 - L1ME LINE L1 -5262 808 555 2133 168 32 8 chr5 4000089 4000469 -199085063 - MLT1B LTR MaLR -1 389 1 938 314 99 8 chr5 4000469 4001118 -199084414 + L2 LINE L2 1916 2716 -598 394 282 41 9 chr5 4001152 4001372 -199084160 + L1ME3 LINE L1 4382 4608 -1538 789 62 0 23 chr5 4001380 4001508 -199084024 + (TG)n Simple_repeat Simple_repeat 2 126 0 225 0 0 0 chr5 4001675 4001700 -199083832 + (CA)n Simple_repeat Simple_repeat 2 26 0 978 258 98 43 chr5 4001706 4002449 -199083083 + L1ME3 LINE L1 5121 5921 -241 184 346 80 16 chr5 4002489 4002677 -199082855 + L2 LINE L2 2826 3025 -288 398 313 33 0 chr5 4002694 4002844 -199082688 + L2 LINE L2 3141 3295 -18 241 321 68 21 chr5 4004331 4004521 -199081011 + L2 LINE L2 2881 3079 -234 256 276 67 29 chr5 4004645 4004750 -199080782 + L2 LINE L2 3201 3309 -4 1318 213 135 19 chr5 4006329 4006743 -199078789 + MLT1C LTR MaLR 5 466 -1 255 119 45 15 chr5 4009912 4009979 -199075553 + GA-rich Low_complexity Low_complexity 1 69 0 4106 211 40 34 chr5 4011239 4011275 -199074257 + L1M3 LINE L1 4213 4247 -1936 189 74 0 0 chr5 4011275 4011302 -199074230 + (CA)n Simple_repeat Simple_repeat 1 27 0 4106 211 40 34 chr5 4011302 4012659 -199072873 + L1M3 LINE L1 4247 5613 -570 939 177 0 0 chr5 4012681 4012828 -199072704 + FRAM SINE Alu 6 152 -24 468 91 0 0 chr5 4012837 4012903 -199072629 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 249 33 0 0 chr5 4013749 4013779 -199071753 + (TG)n Simple_repeat Simple_repeat 1 30 0 1726 168 3 18 chr5 4013925 4014211 -199071321 - AluJo SINE Alu -30 282 1 2094 119 0 17 chr5 4021624 4021926 -199063606 - AluSx SINE Alu -15 297 1 1564 218 78 43 chr5 4022067 4022385 -199063147 - MLT1D LTR MaLR 0 505 163 2179 125 0 0 chr5 4022385 4022674 -199062858 - AluSx SINE Alu -23 289 1 1564 218 78 43 chr5 4022674 4022842 -199062690 - MLT1D LTR MaLR -342 163 2 262 371 34 0 chr5 4023220 4023309 -199062223 + L2 LINE L2 3165 3256 -16 430 254 14 14 chr5 4023499 4023637 -199061895 + L2 LINE L2 3175 3312 -1 4206 106 23 2 chr5 4023783 4024386 -199061146 - L1PB2 LINE L1 -114 6037 5422 1043 216 5 10 chr5 4024391 4024595 -199060937 - AluJo SINE Alu -26 286 84 2295 108 0 0 chr5 4024981 4025276 -199060256 + AluSg SINE Alu 1 295 -15 43966 34 18 2 chr5 4027285 4033335 -199052197 + L1PA3 LINE L1 1 6155 0 22 0 0 0 chr5 4033409 4033431 -199052101 + AT_rich Low_complexity Low_complexity 1 22 0 1037 291 40 2 chr5 4033446 4033896 -199051636 + L1M4 LINE L1 4138 4604 -1542 665 175 7 0 chr5 4033906 4034043 -199051489 + (ATG)n Simple_repeat Simple_repeat 1 138 0 255 170 0 0 chr5 4034153 4034200 -199051332 + (ATG)n Simple_repeat Simple_repeat 1 47 0 862 271 116 32 chr5 4034237 4034516 -199051016 + L1M4 LINE L1 4647 4901 -1245 207 0 0 0 chr5 4034516 4034539 -199050993 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 862 271 116 32 chr5 4034539 4034846 -199050686 + L1M4 LINE L1 4901 5282 -864 645 243 34 28 chr5 4035500 4035677 -199049855 - MER20 DNA MER1_type -31 188 11 254 169 34 17 chr5 4036586 4036645 -199048887 + MLT1K LTR MaLR 184 243 -345 341 21 0 21 chr5 4036963 4037010 -199048522 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1298 214 21 32 chr5 4037014 4037299 -199048233 - AluJo SINE Alu -30 282 1 461 198 8 0 chr5 4037347 4037473 -199048059 + (TG)n Simple_repeat Simple_repeat 2 128 0 239 274 0 16 chr5 4037501 4037563 -199047969 - MIR3 SINE MIR -29 179 119 2226 125 0 22 chr5 4037894 4038213 -199047319 + AluSx SINE Alu 1 312 0 392 312 36 84 chr5 4038647 4039003 -199046529 + L3 LINE CR1 1207 1545 -32 291 209 186 0 chr5 4039163 4039249 -199046283 + LTR16A LTR ERVL 242 343 -107 186 349 16 0 chr5 4040087 4040150 -199045382 - MIR3 SINE MIR -3 205 142 216 0 0 0 chr5 4041192 4041216 -199044316 + (T)n Simple_repeat Simple_repeat 1 24 0 565 198 132 56 chr5 4046417 4046614 -199038918 + MER20 DNA MER1_type 7 218 -1 200 32 32 0 chr5 4047164 4047173 -199038359 + (CAA)n Simple_repeat Simple_repeat 2 9 -24 2058 133 0 25 chr5 4047173 4047489 -199038043 + AluSx SINE Alu 1 308 -4 200 32 32 0 chr5 4047489 4047510 -199038022 + (CAA)n Simple_repeat Simple_repeat 9 33 0 225 0 0 0 chr5 4051599 4051624 -199033908 + (T)n Simple_repeat Simple_repeat 1 25 0 596 253 122 90 chr5 4053085 4054733 -199030799 + L1ME1 LINE L1 497 2210 -4186 2120 139 3 3 chr5 4054733 4055043 -199030489 - AluSx SINE Alu -2 310 1 596 253 122 90 chr5 4055043 4055203 -199030329 + L1ME1 LINE L1 2210 2363 -4033 279 169 67 0 chr5 4055209 4055298 -199030234 + (TA)n Simple_repeat Simple_repeat 1 95 0 3586 261 99 43 chr5 4055325 4056647 -199028885 + L1ME1 LINE L1 2861 4108 -2127 222 37 0 0 chr5 4056647 4056674 -199028858 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1838 143 34 0 chr5 4056682 4056948 -199028584 - AluSx SINE Alu -32 280 6 3586 261 99 43 chr5 4056948 4057168 -199028364 + L1ME1 LINE L1 4114 4320 -1915 1235 259 61 5 chr5 4057168 4057543 -199027989 - MSTD LTR MaLR 0 396 1 3586 261 99 43 chr5 4057543 4059083 -199026449 + L1ME1 LINE L1 4320 6131 -104 2541 271 65 31 chr5 4059467 4061399 -199024133 + L1MEc LINE L1 2019 3985 -2230 364 236 32 13 chr5 4061681 4061838 -199023694 + L1MEc LINE L1 2924 3083 -3132 * 573 264 31 23 chr5 4061818 4062079 -199023453 + L1MEc LINE L1 4223 4485 -1730 1357 257 104 48 chr5 4062182 4062739 -199022793 + L1ME3 LINE L1 4228 4753 -1409 186 103 0 0 chr5 4062739 4062768 -199022764 + (CA)n Simple_repeat Simple_repeat 2 30 0 1357 257 104 48 chr5 4062768 4063836 -199021696 + L1ME3 LINE L1 4753 5938 -224 4618 22 2 4 chr5 4064239 4064784 -199020748 - L1PA4 LINE L1 -19 6136 5593 21 0 0 0 chr5 4064789 4064810 -199020722 + AT_rich Low_complexity Low_complexity 1 21 0 216 67 0 0 chr5 4065165 4065195 -199020337 + (CA)n Simple_repeat Simple_repeat 2 31 0 2201 69 0 3 chr5 4065978 4066269 -199019263 - L1PA7 LINE L1 0 6154 5865 2789 93 37 0 chr5 4066269 4066698 -199018834 + L1P LINE L1 3443 3887 -2259 25 0 0 0 chr5 4066733 4066758 -199018774 + AT_rich Low_complexity Low_complexity 1 25 0 2361 86 0 10 chr5 4067203 4067504 -199018028 - AluSc SINE Alu -11 298 1 5147 19 0 0 chr5 4067856 4068468 -199017064 + L1PA3 LINE L1 5568 6179 0 212 328 23 23 chr5 4068499 4068627 -199016905 + MIR3 SINE MIR 71 198 -10 1904 93 9 102 chr5 4069215 4069537 -199015995 + AluSc SINE Alu 1 292 -17 909 203 190 7 chr5 4069569 4069859 -199015673 - MLT1B LTR MaLR -41 349 7 276 172 0 0 chr5 4069989 4070047 -199015485 + (CA)n Simple_repeat Simple_repeat 1 58 0 2502 77 0 0 chr5 4070217 4070528 -199015004 - AluY SINE Alu 0 311 1 230 300 0 29 chr5 4071128 4071198 -199014334 - L2 LINE L2 0 3313 3246 486 210 5 38 chr5 4071360 4071546 -199013986 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 369 224 21 32 chr5 4071547 4071834 -199013698 + (CA)n Simple_repeat Simple_repeat 1 283 0 333 304 8 16 chr5 4071845 4071970 -199013562 + (CA)n Simple_repeat Simple_repeat 2 125 0 240 226 23 23 chr5 4072187 4072320 -199013212 + (CATA)n Simple_repeat Simple_repeat 2 134 0 1960 208 16 33 chr5 4073489 4073519 -199012013 + L1MB5 LINE L1 5585 5614 -560 2386 125 11 24 chr5 4073519 4073888 -199011644 - THE1B LTR MaLR 0 364 1 1960 208 16 33 chr5 4073888 4074428 -199011104 + L1MB5 LINE L1 5614 6145 -29 315 219 25 12 chr5 4074467 4074627 -199010905 + CT-rich Low_complexity Low_complexity 2 163 0 1263 199 69 0 chr5 4074636 4074882 -199010650 + AluJo SINE Alu 25 287 -25 258 116 0 0 chr5 4074902 4074945 -199010587 + L1MB5 LINE L1 6126 6168 -6 183 129 0 0 chr5 4075077 4075108 -199010424 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 393 215 23 11 chr5 4076259 4076436 -199009096 + CT-rich Low_complexity Low_complexity 1 179 0 667 184 0 16 chr5 4076452 4076824 -199008708 + CT-rich Low_complexity Low_complexity 1 365 0 389 36 18 0 chr5 4078497 4078552 -199006980 + (CA)n Simple_repeat Simple_repeat 2 57 0 683 251 73 71 chr5 4080241 4080652 -199004880 - L1MD2 LINE L1 -245 6048 5637 200 245 9 0 chr5 4080674 4080780 -199004752 + (TA)n Simple_repeat Simple_repeat 1 107 0 346 279 0 0 chr5 4080781 4080867 -199004665 + L1MC4 LINE L1 6616 6701 -1341 1208 218 97 15 chr5 4080868 4081395 -199004137 - L1MD2 LINE L1 -668 5625 5071 1746 263 96 43 chr5 4081498 4082781 -199002751 - L1MD2 LINE L1 -2880 3200 1771 288 77 0 0 chr5 4082781 4082820 -199002712 + (TG)n Simple_repeat Simple_repeat 2 40 0 1746 263 96 43 chr5 4082820 4083626 -199001906 - L1MD2 LINE L1 -4309 1771 1009 794 254 57 19 chr5 4083627 4083978 -199001554 - L1MD2 LINE L1 -5180 903 540 250 322 7 33 chr5 4084044 4084196 -199001336 + L1ME1 LINE L1 278 425 -6138 462 278 82 26 chr5 4084424 4084738 -199000794 + L1ME1 LINE L1 1368 1849 -4714 234 150 0 0 chr5 4084714 4084754 -199000778 + L1ME1 LINE L1 2940 2979 -3403 * 1969 122 45 0 chr5 4084789 4085077 -199000455 + AluSq SINE Alu 1 301 -12 312 247 0 0 chr5 4085124 4085209 -199000323 + L1ME1 LINE L1 4800 4884 -1498 8208 124 22 12 chr5 4085221 4085387 -199000145 + L1PA10 LINE L1 4033 4196 -1972 1576 112 8 48 chr5 4085387 4085636 -198999896 + AluSc SINE Alu 63 301 -8 8208 124 22 12 chr5 4085636 4086802 -198998730 + L1PA10 LINE L1 4196 5382 -786 2846 13 0 0 chr5 4086802 4087115 -198998417 + AluYb8 SINE Alu 2 314 -4 8208 124 22 12 chr5 4087115 4087899 -198997633 + L1PA10 LINE L1 5382 6157 -11 21 0 0 0 chr5 4087907 4087928 -198997604 + AT_rich Low_complexity Low_complexity 1 21 0 1207 242 34 24 chr5 4087928 4088423 -198997109 + L1ME1 LINE L1 4879 5378 -1004 * 1821 198 21 7 chr5 4088421 4088846 -198996686 + L1MC3 LINE L1 7335 7765 -20 2707 228 78 24 chr5 4088871 4089847 -198995685 + L1ME1 LINE L1 5358 6398 -4 2895 13 0 0 chr5 4089852 4090170 -198995362 - AluYb8 SINE Alu 0 318 1 219 69 0 0 chr5 4091539 4091568 -198993964 + (TA)n Simple_repeat Simple_repeat 2 30 0 312 70 0 0 chr5 4092494 4092537 -198992995 + (TG)n Simple_repeat Simple_repeat 2 44 0 1066 271 12 12 chr5 4093357 4093697 -198991835 - MER58B DNA MER1_type 0 341 2 243 0 0 0 chr5 4096417 4096444 -198989088 + (A)n Simple_repeat Simple_repeat 1 27 0 551 290 70 25 chr5 4096783 4096983 -198988549 - MIR SINE MIR -3 259 51 267 161 0 0 chr5 4099411 4099467 -198986065 + (TG)n Simple_repeat Simple_repeat 1 56 0 298 256 0 13 chr5 4101049 4101127 -198984405 + GA-rich Low_complexity Low_complexity 2 78 0 186 103 0 0 chr5 4102428 4102457 -198983075 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2394 119 31 88 chr5 4103730 4104184 -198981348 - MSTA LTR MaLR 0 428 1 282 219 0 0 chr5 4107625 4107689 -198977843 + (CA)n Simple_repeat Simple_repeat 1 64 0 1322 163 23 62 chr5 4108679 4108985 -198976547 + L1MA9 LINE L1 6013 6306 -6 1233 245 71 31 chr5 4109998 4110447 -198975085 + MLT1C LTR MaLR 1 467 0 2006 130 0 3 chr5 4111876 4112175 -198973357 - AluSc SINE Alu -11 298 1 2938 192 11 5 chr5 4112289 4112861 -198972671 + L1MA8 LINE L1 5344 5918 -373 1403 197 11 28 chr5 4112969 4113253 -198972279 - MLT2B1 LTR ERVL -240 280 2 327 49 0 0 chr5 4114683 4114724 -198970808 + (CA)n Simple_repeat Simple_repeat 2 42 0 2095 114 0 7 chr5 4115766 4116072 -198969460 + AluSq SINE Alu 1 304 -9 21 0 0 0 chr5 4116572 4116593 -198968939 + AT_rich Low_complexity Low_complexity 1 21 0 306 227 0 13 chr5 4117938 4118013 -198967519 + MER116 DNA Mariner 1 74 -6 22 0 0 0 chr5 4120074 4120096 -198965436 + AT_rich Low_complexity Low_complexity 1 22 0 651 243 82 19 chr5 4120745 4120951 -198964581 + MER20 DNA MER1_type 1 219 0 281 273 71 71 chr5 4121304 4121487 -198964045 - MIR3 SINE MIR -25 183 1 3676 29 29 43 chr5 4122018 4122502 -198963030 + L1PA6 LINE L1 5677 6153 -1 1337 166 166 36 chr5 4124955 4125287 -198960245 + THE1C LTR MaLR 1 375 0 222 286 0 0 chr5 4126827 4126876 -198958656 + L2 LINE L2 3248 3296 -17 198 171 0 0 chr5 4128364 4128405 -198957127 + (CA)n Simple_repeat Simple_repeat 2 42 0 256 341 0 0 chr5 4128589 4128680 -198956852 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 516 303 89 62 chr5 4128950 4129333 -198956199 + L1M4 LINE L1 4157 4553 -1593 2076 129 0 0 chr5 4129333 4129636 -198955896 + AluSx SINE Alu 1 303 -9 516 303 89 62 chr5 4129636 4129668 -198955864 + L1M4 LINE L1 4553 4583 -1563 520 261 58 22 chr5 4129768 4129906 -198955626 - MIR SINE MIR -22 240 98 587 310 67 8 chr5 4133191 4133430 -198952102 - MIR SINE MIR -9 253 1 9715 179 76 56 chr5 4133803 4136296 -198949236 + L1MCa LINE L1 17 2559 -3867 1705 131 27 0 chr5 4136303 4136562 -198948970 + AluSq SINE Alu 34 299 -14 6554 172 8 26 chr5 4136569 4137723 -198947809 + L1P LINE L1 3284 4414 -1732 2071 137 0 3 chr5 4137723 4138037 -198947495 + AluSq SINE Alu 1 313 0 6554 172 8 26 chr5 4138037 4138178 -198947354 + L1P LINE L1 4414 4556 -1590 402 236 27 0 chr5 4138283 4138393 -198947139 - L1ME3 LINE L1 -318 5844 5732 1612 227 16 68 chr5 4138396 4138881 -198946651 - L1ME2 LINE L1 -306 5858 5399 731 193 47 23 chr5 4138883 4139054 -198946478 + MLT1H LTR MaLR 2 176 -373 1105 189 84 17 chr5 4139075 4139371 -198946161 - L1 LINE L1 -745 5401 5086 257 337 37 6 chr5 4139514 4139677 -198945855 - L2 LINE L2 -663 2651 2484 1821 138 97 13 chr5 4139770 4140081 -198945451 - MER1B DNA MER1_type 0 337 1 303 286 23 12 chr5 4141077 4141248 -198944284 - L1M4 LINE L1 -3136 3010 2838 * 765 179 14 0 chr5 4141247 4141387 -198944145 - L1ME2 LINE L1 -9 6155 6014 2217 108 0 0 chr5 4141623 4141928 -198943604 + AluSx SINE Alu 1 305 -7 297 281 67 76 chr5 4141933 4142157 -198943375 + MLT1J LTR MaLR 108 329 -182 1676 235 57 17 chr5 4142495 4143126 -198942406 + L1 LINE L1 4316 4990 -1156 2043 101 0 14 chr5 4143127 4143415 -198942117 + AluSc SINE Alu 1 284 -25 382 130 0 0 chr5 4143516 4143570 -198941962 + MER68 LTR ERV1 168 221 -341 1712 179 88 18 chr5 4143570 4143738 -198941794 + MSTB1 LTR MaLR 15 170 -262 186 43 0 0 chr5 4143738 4143761 -198941771 + (TTCCC)n Simple_repeat Simple_repeat 1 23 0 1712 179 88 18 chr5 4143761 4143932 -198941600 + MSTB1 LTR MaLR 170 378 -54 2160 121 0 3 chr5 4143933 4144238 -198941294 - AluSx SINE Alu -7 305 2 591 203 73 0 chr5 4144241 4144364 -198941168 + MER68 LTR ERV1 431 562 0 205 338 62 33 chr5 4144408 4144648 -198940884 + L2 LINE L2 2625 2871 -443 210 253 101 40 chr5 4145615 4145714 -198939818 + L2 LINE L2 3192 3296 -17 1795 168 3 3 chr5 4145733 4146037 -198939495 + AluJb SINE Alu 1 304 -8 2343 163 46 6 chr5 4146729 4147590 -198937942 - L1M1 LINE L1 -522 5781 4885 2146 145 62 31 chr5 4148048 4148468 -198937064 + Tigger2a DNA MER2_type 2 434 0 38 68 0 0 chr5 4149071 4149144 -198936388 + GC_rich Low_complexity Low_complexity 1 73 0 256 341 0 0 chr5 4149489 4149580 -198935952 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 307 310 99 55 chr5 4149850 4150234 -198935298 + L1M4 LINE L1 4157 4557 -1589 594 112 119 0 chr5 4150235 4150378 -198935154 + AluSx SINE Alu 2 161 -151 256 149 15 30 chr5 4150644 4150711 -198934821 + GA-rich Low_complexity Low_complexity 3 68 0 232 328 0 0 chr5 4150894 4150958 -198934574 + MIR SINE MIR 45 108 -154 2933 112 18 7 chr5 4152217 4152665 -198932867 + L1PA11 LINE L1 5720 6172 -2 549 158 15 0 chr5 4152688 4152887 -198932645 + L1MA4A LINE L1 6037 6299 -4 1197 130 0 5 chr5 4154005 4154189 -198931343 + AluSg/x SINE Alu 121 303 -9 2215 90 0 10 chr5 4154192 4154492 -198931040 + AluSg1 SINE Alu 12 308 -1 192 125 0 0 chr5 4154517 4154549 -198930983 + (TA)n Simple_repeat Simple_repeat 2 33 0 212 220 0 20 chr5 4154687 4154737 -198930795 + (TA)n Simple_repeat Simple_repeat 2 50 0 1696 125 0 4 chr5 4155065 4155313 -198930219 - AluSx SINE Alu -17 295 49 1579 159 0 51 chr5 4155606 4155920 -198929612 - AluJo SINE Alu -14 298 1 219 343 71 10 chr5 4156561 4156660 -198928872 + L2 LINE L2 3162 3266 -6 2243 100 0 0 chr5 4156737 4157037 -198928495 + AluSx SINE Alu 1 300 -12 2307 89 0 0 chr5 4157599 4157903 -198927629 - AluSx SINE Alu -8 304 1 2055 178 40 40 chr5 4158802 4159197 -198926335 - LTR24C LTR ERV1 -204 431 34 1449 192 7 23 chr5 4159197 4159499 -198926033 - AluJo SINE Alu -15 297 1 2055 178 40 40 chr5 4159499 4159530 -198926002 - LTR24C LTR ERV1 -600 35 5 1023 207 81 54 chr5 4159531 4159826 -198925706 + LTR16A1 LTR ERVL 100 402 -55 183 80 0 0 chr5 4160022 4160047 -198925485 + (ATG)n Simple_repeat Simple_repeat 2 26 0 803 146 0 31 chr5 4160071 4160201 -198925331 - FLAM_C SINE Alu -6 127 2 2247 144 11 0 chr5 4160655 4161003 -198924529 + L1PA12 LINE L1 5569 5920 -248 2196 102 0 0 chr5 4161003 4161297 -198924235 - AluSx SINE Alu -18 294 1 1242 155 81 27 chr5 4161319 4161577 -198923955 - L1MA9 LINE L1 -8 6304 6033 512 146 42 62 chr5 4161578 4161612 -198923920 - Tigger3(Golem) DNA MER2_type -511 2518 2485 865 94 0 36 chr5 4161612 4161750 -198923782 - FLAM_C SINE Alu 0 133 1 512 146 42 62 chr5 4161750 4161842 -198923690 - Tigger3(Golem) DNA MER2_type -544 2485 2393 2087 106 3 7 chr5 4161842 4162144 -198923388 - AluSq SINE Alu -12 301 1 512 146 42 62 chr5 4162144 4162160 -198923372 - Tigger3(Golem) DNA MER2_type -636 2393 2378 293 237 32 21 chr5 4162168 4162261 -198923271 - Tigger3(Golem) DNA MER2_type -2879 150 57 1138 212 73 64 chr5 4162636 4162994 -198922538 - MLT1A2 LTR MaLR -13 361 1 2174 153 18 45 chr5 4163036 4163210 -198922322 + MLT1B LTR MaLR 1 178 -212 2477 102 123 5 chr5 4163210 4163592 -198921940 - MSTA LTR MaLR -1 427 1 2174 153 18 45 chr5 4163592 4163816 -198921716 + MLT1B LTR MaLR 178 388 -2 499 244 42 0 chr5 4163816 4163935 -198921597 + MER20 DNA MER1_type 84 207 -12 2300 97 0 0 chr5 4164202 4164511 -198921021 + AluSx SINE Alu 1 309 -3 2520 46 0 0 chr5 4164659 4164964 -198920568 + AluY SINE Alu 1 305 -6 1329 176 24 41 chr5 4165093 4165388 -198920144 - AluJo SINE Alu -22 290 1 287 297 169 17 chr5 4167120 4167238 -198918294 - L2 LINE L2 0 3272 3137 2005 129 0 3 chr5 4167627 4167922 -198917610 - AluSx SINE Alu -18 294 1 1446 211 91 21 chr5 4167934 4168318 -198917214 - MLT1C LTR MaLR -56 411 1 1690 154 58 141 chr5 4168318 4168765 -198916767 - MLT1C-int LTR MaLR 0 1371 962 1648 174 3 13 chr5 4169108 4169407 -198916125 + AluJo SINE Alu 1 296 -16 1755 181 85 30 chr5 4169605 4170041 -198915491 + MLT1C LTR MaLR 1 460 -7 2437 176 18 31 chr5 4170380 4170612 -198914920 - L1P4 LINE L1 -456 5710 5477 1811 183 0 6 chr5 4170612 4170924 -198914608 - AluJo SINE Alu -2 310 1 2437 176 18 31 chr5 4170924 4171593 -198913939 - L1P4 LINE L1 -689 5477 4823 232 189 0 38 chr5 4171810 4171863 -198913669 + CT-rich Low_complexity Low_complexity 4 54 0 1565 185 3 20 chr5 4172287 4172395 -198913137 + AluSx SINE Alu 5 113 -199 2260 107 51 23 chr5 4172395 4172749 -198912783 + THE1B LTR MaLR 1 364 0 1565 185 3 20 chr5 4172749 4172932 -198912600 + AluSx SINE Alu 113 291 -21 941 172 0 0 chr5 4173115 4173272 -198912260 + MLT1B LTR MaLR 192 348 -42 1084 216 194 14 chr5 4173376 4173741 -198911791 + MER74B LTR ERVL 192 622 0 2602 83 13 44 chr5 4173837 4174004 -198911528 + THE1C LTR MaLR 1 172 -203 2348 40 13 3 chr5 4174004 4174302 -198911230 - AluY SINE Alu -10 301 1 2602 83 13 44 chr5 4174302 4174521 -198911011 + THE1C LTR MaLR 172 375 0 1534 180 7 26 chr5 4174685 4174991 -198910541 - AluJo SINE Alu -12 300 1 1015 177 4 44 chr5 4175780 4176006 -198909526 + AluJo SINE Alu 87 303 -9 523 186 88 0 chr5 4176076 4176189 -198909343 + HAL1 LINE L1 1631 1753 -754 2089 124 3 0 chr5 4177093 4177399 -198908133 - AluSx SINE Alu -5 307 1 1728 129 0 15 chr5 4177408 4177672 -198907860 - AluSx SINE Alu -11 301 42 1031 166 0 0 chr5 4178417 4178592 -198906940 + FRAM SINE Alu 1 172 -4 607 166 31 43 chr5 4178592 4178739 -198906793 - MER3 DNA MER1_type -81 128 1 2296 82 10 3 chr5 4178777 4179083 -198906449 + AluSx SINE Alu 1 308 -4 780 217 12 6 chr5 4179328 4179489 -198906043 - MER58A DNA MER1_type -32 192 31 2026 121 27 0 chr5 4180483 4180780 -198904752 + AluSx SINE Alu 1 305 -7 1412 155 64 4 chr5 4180783 4181047 -198904485 - L1MB7 LINE L1 -22 6162 5883 1388 221 105 41 chr5 4181056 4181323 -198904209 - MSTD LTR MaLR -11 385 88 1448 123 0 120 chr5 4181323 4181664 -198903868 - AluSg SINE Alu 0 300 1 1388 221 105 41 chr5 4181664 4181758 -198903774 - MSTD LTR MaLR -308 88 1 1863 168 10 54 chr5 4181758 4181977 -198903555 - L1MB7 LINE L1 -291 5893 5697 1845 161 3 0 chr5 4181977 4182288 -198903244 - AluJo SINE Alu 0 312 1 1863 168 10 54 chr5 4182288 4182456 -198903076 - L1MB7 LINE L1 -487 5697 5523 284 0 28 0 chr5 4182557 4182593 -198902939 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 258 312 74 40 chr5 4182835 4183037 -198902495 - MIR SINE MIR -7 255 47 30 45 0 0 chr5 4184075 4184119 -198901413 + AT_rich Low_complexity Low_complexity 1 44 0 3530 192 41 15 chr5 4184185 4184936 -198900596 - L1MA9 LINE L1 -38 6274 5504 266 225 14 14 chr5 4185444 4185515 -198900017 + MER103 DNA DNA 16 86 -80 522 280 108 20 chr5 4186142 4186392 -198899140 - L2 LINE L2 0 3313 3042 1586 266 132 48 chr5 4186524 4187018 -198898514 + MER69B DNA AcHobo 173 624 -1902 2138 69 49 0 chr5 4187018 4187306 -198898226 - AluY SINE Alu -9 302 1 1586 266 132 48 chr5 4187306 4187741 -198897791 + MER69B DNA AcHobo 624 1180 -46 2069 137 39 28 chr5 4187944 4188381 -198897151 + L1PA16 LINE L1 5725 6166 0 2084 139 0 0 chr5 4188487 4188797 -198896735 - AluSg SINE Alu 0 310 1 217 380 10 0 chr5 4190550 4190650 -198894882 + MIR SINE MIR 156 256 -6 2131 125 24 40 chr5 4191167 4191544 -198893988 + THE1C LTR MaLR 3 373 -2 1308 223 3 25 chr5 4194227 4194596 -198890936 + AluJb SINE Alu 1 362 0 1321 139 9 5 chr5 4194713 4194929 -198890603 + AluSq SINE Alu 97 313 0 2495 159 10 18 chr5 4194930 4195421 -198890111 + L1PA11 LINE L1 4416 4902 -1244 1852 130 3 0 chr5 4195421 4195706 -198889826 - AluSx SINE Alu 0 312 27 6162 109 3 14 chr5 4195752 4197027 -198888505 + L1PA11 LINE L1 4894 6161 -13 2148 274 85 15 chr5 4197074 4198243 -198887289 + L1MC1 LINE L1 2207 3456 -2690 341 280 21 0 chr5 4198253 4198346 -198887186 + MER2 DNA MER2_type 1 95 -250 224 185 31 0 chr5 4198350 4198415 -198887117 + (TA)n Simple_repeat Simple_repeat 1 67 0 367 186 0 0 chr5 4198505 4198564 -198886968 - MER2 DNA MER2_type -286 59 1 * 448 241 154 23 chr5 4198564 4198783 -198886749 + MER2 DNA MER2_type 97 344 -1 212 161 48 0 chr5 4199315 4199377 -198886155 + (TA)n Simple_repeat Simple_repeat 1 65 0 359 203 0 0 chr5 4199467 4199526 -198886006 - MER2 DNA MER2_type -286 59 1 * 420 241 176 23 chr5 4199526 4199741 -198885791 + MER2 DNA MER2_type 97 344 -1 4929 237 24 30 chr5 4199749 4201198 -198884334 + L1MC1 LINE L1 3480 4919 -1227 3833 190 44 17 chr5 4201204 4202161 -198883371 + L1MC1 LINE L1 5083 6063 -270 478 258 33 0 chr5 4202170 4202290 -198883242 - MER69 DNA AcHobo -1064 162 39 455 167 20 0 chr5 4206071 4206269 -198879263 - L1MA4A LINE L1 -4 6299 6037 2293 114 2 48 chr5 4206396 4206816 -198878716 - L1PA11 LINE L1 -54 6120 5720 * 3886 173 11 7 chr5 4206815 4206846 -198878686 - L1MA4A LINE L1 -265 6038 6009 1462 163 37 55 chr5 4206846 4207227 -198878305 + THE1C LTR MaLR 1 374 -1 3886 173 11 7 chr5 4207227 4208341 -198877191 - L1MA4A LINE L1 -294 6009 4885 2265 107 3 3 chr5 4212090 4212389 -198873143 + AluSq SINE Alu 1 299 -14 479 280 81 5 chr5 4212811 4212997 -198872535 + MER3 DNA MER1_type 6 205 -4 739 160 35 0 chr5 4213227 4213486 -198872046 + (TCTA)n Simple_repeat Simple_repeat 1 268 0 336 323 134 8 chr5 4213487 4213859 -198871673 + L1ME4a LINE L1 5555 5973 -148 4214 180 42 37 chr5 4216161 4217540 -198867992 + L1MA7 LINE L1 4901 6290 -1 552 306 69 26 chr5 4217756 4218145 -198867387 - MLT1I LTR MaLR -3 406 1 574 284 101 45 chr5 4218173 4218528 -198867004 + MLT1L LTR MaLR 241 615 0 883 295 157 14 chr5 4220198 4220625 -198864907 + MLT1D LTR MaLR 1 488 -17 2574 153 0 16 chr5 4222206 4222637 -198862895 + MSTA LTR MaLR 1 424 -4 666 189 0 0 chr5 4222659 4222770 -198862762 + FLAM_C SINE Alu 5 115 -18 413 19 19 0 chr5 4222789 4222843 -198862689 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 279 0 0 0 chr5 4222842 4222873 -198862659 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 234 0 0 0 chr5 4222872 4222898 -198862634 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 243 0 0 0 chr5 4222897 4222924 -198862608 + (GA)n Simple_repeat Simple_repeat 2 28 0 340 347 34 29 chr5 4223607 4223846 -198861686 + L1MC4a LINE L1 5645 5884 -1924 373 303 23 8 chr5 4224381 4224513 -198861019 + MER94 DNA DNA 1 134 0 269 276 17 60 chr5 4224577 4224693 -198860839 + L2 LINE L2 3203 3313 0 280 344 104 6 chr5 4225025 4225188 -198860344 + MER5A DNA MER1_type 7 185 -4 1278 228 155 54 chr5 4225935 4226361 -198859171 + MLT2B1 LTR ERVL 2 470 -50 258 91 91 0 chr5 4226397 4226441 -198859091 + MLT2D LTR ERVL 367 414 0 305 254 155 21 chr5 4228403 4228480 -198857052 - LTR50 LTR ERVL -2 793 728 1884 211 30 30 chr5 4228480 4228944 -198856588 + MLT1C LTR MaLR 4 467 0 305 254 155 21 chr5 4228944 4229059 -198856473 - LTR50 LTR ERVL -67 728 575 516 294 21 6 chr5 4229791 4229971 -198855561 + MLT1B LTR MaLR 189 382 -8 21 57 0 0 chr5 4231757 4231792 -198853740 + AT_rich Low_complexity Low_complexity 1 35 0 194 0 39 0 chr5 4232142 4232168 -198853364 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 210 265 0 36 chr5 4234877 4234960 -198850572 + C-rich Low_complexity Low_complexity 4 83 0 183 176 29 15 chr5 4238394 4238462 -198847070 + G-rich Low_complexity Low_complexity 3 71 0 29 28 0 0 chr5 4238633 4238669 -198846863 + GC_rich Low_complexity Low_complexity 1 36 0 36 102 0 0 chr5 4238816 4238943 -198846589 + GC_rich Low_complexity Low_complexity 1 127 0 224 149 21 0 chr5 4241824 4241871 -198843661 + CT-rich Low_complexity Low_complexity 1 48 0 25 65 0 0 chr5 4242630 4242676 -198842856 + GC_rich Low_complexity Low_complexity 1 46 0 291 113 0 0 chr5 4244115 4244168 -198841364 + (TG)n Simple_repeat Simple_repeat 1 53 0 235 291 0 29 chr5 4245614 4245717 -198839815 + (CGGGG)n Simple_repeat Simple_repeat 5 104 0 692 244 122 13 chr5 4248658 4248888 -198836644 - ORSL DNA AcHobo -17 258 4 311 0 26 0 chr5 4249740 4249779 -198835753 + (TG)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr5 4250279 4250300 -198835232 + AT_rich Low_complexity Low_complexity 1 21 0 194 62 31 0 chr5 4252979 4253011 -198832521 + (TG)n Simple_repeat Simple_repeat 1 33 0 371 254 59 25 chr5 4253144 4253262 -198832270 - MER5A DNA MER1_type -35 154 33 22 35 0 0 chr5 4253975 4254004 -198831528 + AT_rich Low_complexity Low_complexity 1 29 0 2158 127 0 19 chr5 4254324 4254639 -198830893 + AluSx SINE Alu 1 309 -3 479 94 0 0 chr5 4254697 4254761 -198830771 - AluSq/x SINE Alu -184 129 66 542 151 0 0 chr5 4254862 4254948 -198830584 + AluSg/x SINE Alu 213 298 -12 1496 174 89 11 chr5 4257199 4257480 -198828052 - AluJo SINE Alu -3 309 7 416 291 135 38 chr5 4257808 4258148 -198827384 + L3 LINE CR1 1204 1576 -1 540 258 56 50 chr5 4263719 4263917 -198821615 + MER20 DNA MER1_type 17 215 -4 277 176 69 98 chr5 4264462 4264564 -198820968 + MIR SINE MIR 38 136 -72 198 103 0 0 chr5 4266739 4266768 -198818764 + (TA)n Simple_repeat Simple_repeat 1 29 0 351 326 40 0 chr5 4266881 4267105 -198818427 + L1ME4a LINE L1 5710 5942 -179 2297 125 8 40 chr5 4267929 4268305 -198817227 - THE1B LTR MaLR 0 364 1 1998 157 3 6 chr5 4268986 4269299 -198816233 - AluJb SINE Alu 0 312 1 775 311 136 44 chr5 4270315 4271374 -198814158 + L2 LINE L2 1478 2633 -681 189 0 0 0 chr5 4271477 4271498 -198814034 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 541 187 60 26 chr5 4271636 4271905 -198813627 + MLT1A1 LTR MaLR 12 353 -12 228 310 60 69 chr5 4272134 4272250 -198813282 - MIR SINE MIR -88 174 60 336 270 173 9 chr5 4272259 4272577 -198812955 - LTR16A LTR ERVL -15 435 66 288 0 0 0 chr5 4274123 4274155 -198811377 + (GA)n Simple_repeat Simple_repeat 1 32 0 204 129 81 16 chr5 4274483 4274545 -198810987 + CT-rich Low_complexity Low_complexity 2 67 0 403 209 18 0 chr5 4274659 4274769 -198810763 + CT-rich Low_complexity Low_complexity 4 115 0 304 264 19 38 chr5 4274782 4274888 -198810644 - L1M4 LINE L1 -2962 3184 3081 234 0 0 0 chr5 4274889 4274915 -198810617 + (TC)n Simple_repeat Simple_repeat 1 26 0 1487 194 33 33 chr5 4274917 4275216 -198810316 - AluJb SINE Alu -12 300 2 194 318 15 15 chr5 4275848 4275914 -198809618 - L2 LINE L2 -3 3269 3204 198 305 19 110 chr5 4275943 4276016 -198809516 + L2 LINE L2 2453 2507 -807 1977 113 0 39 chr5 4276016 4276322 -198809210 - AluSc SINE Alu 0 303 9 198 305 19 110 chr5 4276322 4276401 -198809131 + L2 LINE L2 2507 2592 -722 1711 158 15 75 chr5 4277273 4277457 -198808075 + MLT1B LTR MaLR 1 148 -242 2298 88 0 14 chr5 4277457 4277754 -198807778 + AluY SINE Alu 1 293 -18 1711 158 15 75 chr5 4277754 4277980 -198807552 + MLT1B LTR MaLR 148 386 -4 1402 211 62 9 chr5 4278407 4278743 -198806789 + MLT1A1 LTR MaLR 12 365 0 734 222 48 0 chr5 4278793 4278982 -198806550 + L1MC1 LINE L1 6129 6326 -7 576 289 10 102 chr5 4280038 4280936 -198804596 + TAR1 Satellite telomeric 1 816 -777 442 263 70 36 chr5 4281241 4281469 -198804063 - MLT1D LTR MaLR 0 467 261 1852 204 13 35 chr5 4281519 4281970 -198803562 - L1MB1 LINE L1 -39 6129 5689 433 244 19 39 chr5 4281966 4282167 -198803365 + L1M4c LINE L1 2163 2365 -3781 * 344 167 0 0 chr5 4282150 4282216 -198803316 + L1M2 LINE L1 5590 5655 -636 * 2048 152 0 10 chr5 4282246 4282548 -198802984 - AluSx SINE Alu -13 299 1 525 222 58 58 chr5 4282553 4282742 -198802790 - MLT1D LTR MaLR -313 192 4 2211 100 14 0 chr5 4283129 4283420 -198802112 - AluSc SINE Alu -14 295 1 326 262 6 139 chr5 4283718 4283890 -198801642 - MER5A DNA MER1_type -2 187 39 1822 189 23 30 chr5 4341087 4341695 -198743837 + L1MA8 LINE L1 4306 4990 -1156 1776 103 0 8 chr5 4341696 4341938 -198743594 + AluSc SINE Alu 1 240 -69 2182 108 0 3 chr5 4342105 4342411 -198743121 - AluSx SINE Alu -7 305 1 765 179 14 0 chr5 4342648 4342788 -198742744 + L1ME2 LINE L1 6014 6155 -9 378 277 25 25 chr5 4342787 4342989 -198742543 + L1M4c LINE L1 2838 3039 -3107 * 1296 175 0 87 chr5 4343977 4344311 -198741221 + L1MA8 LINE L1 5560 5866 -296 389 218 120 8 chr5 4344306 4344677 -198740855 + L1ME1 LINE L1 5732 6154 -12 * 243 103 0 0 chr5 4344694 4344733 -198740799 + (A)n Simple_repeat Simple_repeat 1 39 0 550 286 52 31 chr5 4344777 4344969 -198740563 + MIR SINE MIR 67 262 0 587 294 102 55 chr5 4344992 4345336 -198740196 + L1M4 LINE L1 2376 2735 -3411 201 240 93 27 chr5 4346778 4346853 -198738679 + L2 LINE L2 3192 3271 -42 1795 168 3 3 chr5 4346988 4347292 -198738240 + AluJb SINE Alu 1 304 -8 303 280 0 0 chr5 4348267 4348410 -198737122 + (CA)n Simple_repeat Simple_repeat 2 144 0 213 39 0 0 chr5 4348485 4348511 -198737021 + (CA)n Simple_repeat Simple_repeat 1 26 0 1149 177 111 46 chr5 4348612 4348963 -198736569 - MLT1C LTR MaLR -93 374 1 1648 174 3 13 chr5 4349161 4349460 -198736072 - AluJo SINE Alu -16 296 1 1803 154 59 131 chr5 4349777 4350219 -198735313 + MLT1C-int LTR MaLR 962 1371 0 1398 206 88 28 chr5 4350219 4350607 -198734925 + MLT1C LTR MaLR 1 411 -56 2096 128 0 10 chr5 4350619 4350917 -198734615 + AluSx SINE Alu 1 295 -17 242 303 160 17 chr5 4351309 4351428 -198734104 + L2 LINE L2 3137 3272 0 1571 125 79 0 chr5 4351488 4351728 -198733804 - AluJo SINE Alu -23 289 31 1224 171 18 0 chr5 4351764 4351981 -198733551 + MER68 LTR ERV1 1 221 -341 1629 182 90 18 chr5 4351981 4352149 -198733383 + MSTB1 LTR MaLR 15 170 -262 186 43 0 0 chr5 4352149 4352172 -198733360 + (TTCCC)n Simple_repeat Simple_repeat 1 23 0 1629 182 90 18 chr5 4352172 4352338 -198733194 + MSTB1 LTR MaLR 170 373 -59 2318 126 0 3 chr5 4352339 4352649 -198732883 - AluSx SINE Alu -2 310 2 570 203 73 0 chr5 4352652 4352775 -198732757 + MER68 LTR ERV1 431 562 0 212 377 50 23 chr5 4352819 4353161 -198732371 + L2 LINE L2 2625 2975 -339 270 30 0 0 chr5 4353229 4353262 -198732270 + MER20 DNA MER1_type 25 57 -162 1200 236 76 22 chr5 4353274 4353630 -198731902 - MLT1B LTR MaLR -15 375 1 2074 160 10 38 chr5 4353672 4353846 -198731686 + MLT1B LTR MaLR 1 178 -212 2347 102 123 5 chr5 4353846 4354228 -198731304 - MSTA LTR MaLR -1 427 1 2074 160 10 38 chr5 4354228 4354452 -198731080 + MLT1B LTR MaLR 178 388 -2 491 244 42 0 chr5 4354452 4354571 -198730961 + MER20 DNA MER1_type 84 207 -12 2465 97 0 0 chr5 4354838 4355147 -198730385 + AluSx SINE Alu 1 309 -3 2715 45 0 0 chr5 4355295 4355604 -198729928 + AluY SINE Alu 1 309 -2 1568 167 24 37 chr5 4355729 4356023 -198729509 - AluJo SINE Alu -22 290 1 390 325 131 0 chr5 4356912 4357118 -198728414 - L2 LINE L2 -595 2719 2487 1726 142 97 13 chr5 4357215 4357526 -198728006 - MER1B DNA MER1_type 0 337 1 1815 175 3 20 chr5 4358207 4358315 -198727217 + AluSx SINE Alu 5 113 -199 2108 107 51 25 chr5 4358315 4358670 -198726862 + THE1B LTR MaLR 1 364 0 1815 175 3 20 chr5 4358670 4358853 -198726679 + AluSx SINE Alu 113 291 -21 925 166 0 0 chr5 4359036 4359193 -198726339 + MLT1B LTR MaLR 192 348 -42 1064 223 195 11 chr5 4359297 4359661 -198725871 + MER74B LTR ERVL 192 622 0 2467 83 13 44 chr5 4359757 4359924 -198725608 + THE1C LTR MaLR 1 172 -203 2700 27 7 3 chr5 4359924 4360224 -198725308 - AluY SINE Alu -10 301 1 2467 83 13 44 chr5 4360224 4360443 -198725089 + THE1C LTR MaLR 172 375 0 1691 180 7 26 chr5 4360607 4360913 -198724619 - AluJo SINE Alu -12 300 1 1127 177 4 44 chr5 4361692 4361918 -198723614 + AluJo SINE Alu 87 303 -9 509 186 88 0 chr5 4361988 4362101 -198723431 + HAL1 LINE L1 1631 1753 -754 1759 156 0 51 chr5 4362825 4363139 -198722393 + AluJo SINE Alu 1 298 -14 1824 125 0 4 chr5 4363432 4363680 -198721852 + AluSx SINE Alu 49 295 -17 212 220 0 20 chr5 4364008 4364058 -198721474 + (TA)n Simple_repeat Simple_repeat 1 49 0 192 125 0 0 chr5 4364196 4364228 -198721304 + (TA)n Simple_repeat Simple_repeat 2 33 0 2371 90 0 10 chr5 4364253 4364553 -198720979 - AluSg1 SINE Alu -1 308 12 1276 129 0 0 chr5 4364556 4364726 -198720806 - AluSg/x SINE Alu -9 301 132 2263 92 45 3 chr5 4364726 4365018 -198720514 - AluSx SINE Alu -8 304 1 1955 186 12 49 chr5 4365180 4365461 -198720071 + L1MB7 LINE L1 5402 5667 -517 2007 161 3 0 chr5 4365461 4365772 -198719760 + AluJo SINE Alu 1 312 0 1955 186 12 49 chr5 4365772 4365991 -198719541 + L1MB7 LINE L1 5667 5893 -291 1346 227 106 28 chr5 4365991 4366085 -198719447 + MSTD LTR MaLR 1 86 -310 2359 112 0 0 chr5 4366085 4366390 -198719142 + AluSg SINE Alu 1 305 -5 1346 227 106 28 chr5 4366390 4366652 -198718880 + MSTD LTR MaLR 86 385 -11 1356 159 64 4 chr5 4366661 4366925 -198718607 + L1MB7 LINE L1 5883 6162 -22 2186 121 27 0 chr5 4366928 4367225 -198718307 - AluSx SINE Alu -7 305 1 749 217 12 6 chr5 4368219 4368380 -198717152 + MER58A DNA MER1_type 31 192 -32 2457 82 10 3 chr5 4368625 4368931 -198716601 - AluSx SINE Alu -4 308 1 593 177 41 48 chr5 4368969 4369116 -198716416 + MER3 DNA MER1_type 1 146 -63 1119 166 0 0 chr5 4369116 4369291 -198716241 - FRAM SINE Alu -4 172 1 1862 131 0 15 chr5 4370036 4370303 -198715229 + AluSx SINE Alu 42 304 -8 2251 124 3 0 chr5 4370309 4370615 -198714917 + AluSx SINE Alu 1 307 -5 196 369 63 9 chr5 4370957 4371068 -198714464 + L2 LINE L2 3191 3307 -6 2400 105 0 0 chr5 4371145 4371450 -198714082 + AluSx SINE Alu 1 305 -7 2473 89 0 0 chr5 4372008 4372312 -198713220 - AluSx SINE Alu -8 304 1 216 97 0 0 chr5 4372998 4373029 -198712503 + (CCGCG)n Simple_repeat Simple_repeat 1 31 0 2023 155 57 26 chr5 4373723 4374143 -198711389 - Tigger2a DNA MER2_type 0 434 2 819 208 0 7 chr5 4374394 4374543 -198710989 + Tigger3(Golem) DNA MER2_type 1 148 -2881 510 148 26 17 chr5 4374545 4374569 -198710963 + Tigger3(Golem) DNA MER2_type 2370 2392 -637 2244 106 3 7 chr5 4374569 4374871 -198710661 + AluSq SINE Alu 1 301 -12 510 148 26 17 chr5 4374871 4374961 -198710571 + Tigger3(Golem) DNA MER2_type 2392 2485 -544 822 94 0 36 chr5 4374963 4375101 -198710431 + FLAM_C SINE Alu 1 133 0 1432 139 51 0 chr5 4375121 4375394 -198710138 + L1MA9 LINE L1 6018 6304 -8 2358 99 0 0 chr5 4375416 4375710 -198709822 + AluSx SINE Alu 1 294 -18 2173 141 11 0 chr5 4375710 4376058 -198709474 - L1PA12 LINE L1 -248 5920 5569 768 146 0 31 chr5 4376512 4376642 -198708890 + FLAM_C SINE Alu 2 127 -6 183 80 0 0 chr5 4376666 4376691 -198708841 + (CAT)n Simple_repeat Simple_repeat 2 26 0 1072 216 69 69 chr5 4376886 4377182 -198708350 - LTR16A1 LTR ERVL -55 402 104 2987 174 37 29 chr5 4377182 4377213 -198708319 + LTR24C LTR ERV1 5 34 -601 1602 192 7 23 chr5 4377213 4377515 -198708017 + AluJo SINE Alu 1 297 -15 2987 174 37 29 chr5 4377515 4378109 -198707423 + LTR24C LTR ERV1 34 635 0 1072 216 69 69 chr5 4378109 4378159 -198707373 - LTR16A1 LTR ERVL -352 105 56 2285 104 0 3 chr5 4378394 4378693 -198706839 + AluSx SINE Alu 2 299 -13 271 204 0 0 chr5 4378710 4378759 -198706773 + L1MA7 LINE L1 6018 6066 -225 2254 110 3 0 chr5 4479012 4479320 -198606212 + AluSc SINE Alu 1 309 0 25 0 0 0 chr5 4479494 4479519 -198606013 + AT_rich Low_complexity Low_complexity 1 25 0 946 53 26 7 chr5 4479603 4479754 -198605778 + (TAGA)n Simple_repeat Simple_repeat 2 155 0 232 323 23 0 chr5 4479875 4480005 -198605527 - L2 LINE L2 -1635 1679 1547 208 143 0 0 chr5 4480282 4480317 -198605215 + (TTA)n Simple_repeat Simple_repeat 3 37 0 1079 258 31 17 chr5 4480655 4480942 -198604590 - L1MD1 LINE L1 -168 6074 5784 2128 243 92 66 chr5 4481643 4482714 -198602818 + L1ME2 LINE L1 5045 6156 -8 25 31 0 0 chr5 4482800 4482832 -198602700 + AT_rich Low_complexity Low_complexity 1 32 0 320 278 108 33 chr5 4482963 4483323 -198602209 + L1ME4a LINE L1 2200 2586 -3560 284 173 123 48 chr5 4483437 4483635 -198601897 + MER5C DNA MER1_type 47 323 -1 254 282 41 46 chr5 4483636 4483831 -198601701 + L1ME4a LINE L1 2689 2882 -3264 670 271 74 17 chr5 4484063 4484444 -198601088 + L1ME4a LINE L1 5209 5607 -555 6951 67 26 1 chr5 4484561 4486226 -198599306 + L1PA7 LINE L1 4455 6154 0 2025 127 0 7 chr5 4486399 4486691 -198598841 + AluSx SINE Alu 1 290 -22 996 121 0 73 chr5 4488915 4489080 -198596452 + Charlie3 DNA MER1_type 2550 2702 -8 302 279 16 16 chr5 4489107 4489229 -198596303 + L1ME4a LINE L1 5762 5883 -238 441 309 90 18 chr5 4490641 4490864 -198594668 - MLT1J2 LTR MaLR -158 292 54 250 235 74 25 chr5 4491105 4491186 -198594346 - Charlie7 DNA MER1_type -1 2611 2527 1335 224 86 45 chr5 4491382 4491542 -198593990 + L1MC1 LINE L1 4341 4493 -1653 2045 93 0 0 chr5 4491542 4491830 -198593702 + AluSq SINE Alu 35 322 0 1335 224 86 45 chr5 4491830 4492133 -198593399 + L1MC1 LINE L1 4493 4824 -1322 5061 150 32 8 chr5 4492161 4493029 -198592503 + L1MC1 LINE L1 5356 6244 -89 419 132 0 85 chr5 4493142 4493248 -198592284 + L1MA7 LINE L1 6194 6290 -1 896 140 11 11 chr5 4493536 4493715 -198591817 + GA-rich Low_complexity Low_complexity 2 180 0 749 165 24 10 chr5 4493743 4494011 -198591521 + GA-rich Low_complexity Low_complexity 1 271 0 255 195 0 0 chr5 4494011 4494052 -198591480 + polypurine Low_complexity Low_complexity 1 41 0 681 171 28 6 chr5 4494052 4494228 -198591304 + GA-rich Low_complexity Low_complexity 1 180 0 203 146 24 0 chr5 4494256 4494297 -198591235 + GA-rich Low_complexity Low_complexity 1 42 0 2319 225 49 24 chr5 4494338 4494952 -198590580 - L1MB3 LINE L1 -16 6167 5539 2292 128 0 0 chr5 4497710 4498022 -198587510 - AluSx SINE Alu 0 312 1 337 318 40 10 chr5 4498158 4498359 -198587173 + LTR16A LTR ERVL 203 409 -41 2366 60 0 3 chr5 4498458 4498779 -198586753 - AluY SINE Alu 0 320 1 346 240 40 40 chr5 4498970 4499120 -198586412 - L1MCc LINE L1 -6250 173 24 235 171 24 0 chr5 4500390 4500431 -198585101 + L1ME LINE L1 5560 5601 -561 1270 132 0 0 chr5 4500539 4500724 -198584808 + AluSg/x SINE Alu 131 312 0 21 0 0 0 chr5 4501236 4501257 -198584275 + AT_rich Low_complexity Low_complexity 1 21 0 818 211 17 29 chr5 4501489 4501682 -198583850 + MLT1A2 LTR MaLR 1 174 -200 208 220 0 0 chr5 4501682 4501732 -198583800 + CT-rich Low_complexity Low_complexity 1 50 0 2021 234 42 22 chr5 4501858 4502310 -198583222 + MLT1A2-int LTR MaLR 1271 1731 -4 1297 243 38 30 chr5 4502314 4502685 -198582847 + MLT1A2 LTR MaLR 1 374 0 273 264 28 47 chr5 4504331 4504437 -198581095 - MIR SINE MIR -1 261 158 365 179 64 0 chr5 4504782 4504860 -198580672 - L1MC1 LINE L1 -8 6325 6243 1504 115 42 0 chr5 4504862 4505079 -198580453 + THE1B LTR MaLR 1 226 -138 24491 128 16 77 chr5 4506041 4509085 -198576447 + L1P LINE L1 12 2676 -3470 2276 113 0 0 chr5 4509085 4509386 -198576146 + AluY SINE Alu 1 301 -10 24491 128 16 77 chr5 4509386 4511007 -198574525 + L1P LINE L1 2676 4394 -1752 206 45 15 159 chr5 4511176 4511377 -198574155 + (CACAT)n Simple_repeat Simple_repeat 5 176 0 270 29 0 162 chr5 4511395 4511599 -198573933 + (CACAT)n Simple_repeat Simple_repeat 1 171 0 * 376 364 0 0 chr5 4511465 4511763 -198573769 + C-rich Low_complexity Low_complexity 1 298 0 3708 47 0 4 chr5 4513625 4514075 -198571457 - LTR7 LTR ERV1 -2 448 1 1634 171 25 0 chr5 4514404 4514685 -198570847 + AluJb SINE Alu 1 288 -24 269 176 29 0 chr5 4514685 4514753 -198570779 + (TA)n Simple_repeat Simple_repeat 1 70 0 430 92 72 20 chr5 4514755 4514907 -198570625 + (TTATA)n Simple_repeat Simple_repeat 1 160 0 323 162 27 0 chr5 4514910 4514984 -198570548 + (TA)n Simple_repeat Simple_repeat 2 77 0 557 268 60 0 chr5 4517016 4517199 -198568333 + MIR SINE MIR 61 254 -8 1581 82 5 0 chr5 4517780 4517986 -198567546 - AluY SINE Alu -94 217 11 22 56 0 0 chr5 4518120 4518156 -198567376 + AT_rich Low_complexity Low_complexity 1 36 0 2322 89 3 0 chr5 4518622 4518913 -198566619 + AluSp SINE Alu 1 292 -21 23 0 0 0 chr5 4518929 4518952 -198566580 + AT_rich Low_complexity Low_complexity 1 23 0 200 368 46 0 chr5 4519358 4519513 -198566019 + MIR SINE MIR 18 183 -58 28 0 0 0 chr5 4521032 4521060 -198564472 + AT_rich Low_complexity Low_complexity 1 28 0 225 304 35 3 chr5 4521803 4521905 -198563627 + MIR SINE MIR 31 134 -74 2117 120 6 28 chr5 4522178 4522495 -198563037 + AluSx SINE Alu 1 310 -2 199 276 138 43 chr5 4527368 4527484 -198558048 + L2 LINE L2 3010 3136 -177 2393 118 28 3 chr5 4527524 4527879 -198557653 - THE1B LTR MaLR 0 364 1 354 234 0 0 chr5 4528194 4528301 -198557231 + (TGGG)n Simple_repeat Simple_repeat 3 109 0 601 203 9 6 chr5 4529926 4530273 -198555259 + (TGGA)n Simple_repeat Simple_repeat 1 347 0 222 205 0 0 chr5 4530406 4530445 -198555087 + T-rich Low_complexity Low_complexity 5 43 0 379 281 158 32 chr5 4531701 4532107 -198553425 - L1ME4a LINE L1 -239 5882 5426 314 280 15 63 chr5 4533211 4533265 -198552267 + L1MDb LINE L1 1147 1202 -5207 1355 218 92 12 chr5 4533265 4533600 -198551932 - MLT1A1 LTR MaLR 0 365 4 314 280 15 63 chr5 4533600 4533813 -198551719 + L1MDb LINE L1 1202 1401 -5008 514 339 47 4 chr5 4533861 4534097 -198551435 + L1M4 LINE L1 4628 4873 -1273 234 91 0 0 chr5 4534238 4534271 -198551261 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 245 182 121 30 chr5 4535110 4535176 -198550356 + MLT1K LTR MaLR 192 263 -325 236 305 53 11 chr5 4535134 4535229 -198550303 + LTR67 LTR ERVL 146 244 -313 * 2018 136 0 0 chr5 4535340 4535613 -198549919 - AluSg SINE Alu -37 273 1 21 57 0 0 chr5 4537347 4537382 -198548150 + AT_rich Low_complexity Low_complexity 1 35 0 2250 66 0 0 chr5 4537504 4537776 -198547756 + AluY SINE Alu 34 305 -6 2199 108 0 10 chr5 4538890 4539186 -198546346 + AluSc SINE Alu 1 293 -16 3730 233 19 42 chr5 4539736 4541264 -198544268 - L1P3 LINE L1 -4735 1140 4 1690 188 14 0 chr5 4541309 4541597 -198543935 - AluSx SINE Alu -17 295 4 192 77 0 0 chr5 4543608 4543634 -198541898 + (CA)n Simple_repeat Simple_repeat 2 27 0 516 221 0 0 chr5 4543645 4543994 -198541538 + (CA)n Simple_repeat Simple_repeat 1 349 0 462 243 0 0 chr5 4544005 4544182 -198541350 + (CA)n Simple_repeat Simple_repeat 1 177 0 393 247 0 0 chr5 4544207 4544373 -198541159 + (CA)n Simple_repeat Simple_repeat 2 167 0 195 42 0 0 chr5 4545002 4545026 -198540506 + (CAAAG)n Simple_repeat Simple_repeat 1 24 0 31 0 0 0 chr5 4546937 4546968 -198538564 + AT_rich Low_complexity Low_complexity 1 31 0 196 339 46 15 chr5 4547735 4547865 -198537667 - L2 LINE L2 -15 3298 3165 553 233 72 22 chr5 4548029 4548209 -198537323 - L1MC4 LINE L1 -1053 6989 6801 2683 17 3 0 chr5 4549020 4549314 -198536218 + AluY SINE Alu 1 295 -16 236 337 0 33 chr5 4550702 4550794 -198534738 - L3 LINE CR1 -161 1416 1328 230 318 16 0 chr5 4550921 4550984 -198534548 + MIR SINE MIR 85 148 -114 195 171 0 43 chr5 4551621 4551691 -198533841 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 306 156 78 0 chr5 4551699 4551763 -198533769 - L1MCa LINE L1 -4362 2064 1996 1349 172 19 130 chr5 4551763 4552124 -198533408 - MER7A DNA MER2_type -16 330 12 1833 108 8 8 chr5 4552232 4552492 -198533040 + AluSg SINE Alu 32 291 -19 524 236 6 0 chr5 4554164 4554342 -198531190 + (CA)n Simple_repeat Simple_repeat 1 179 0 477 244 134 0 chr5 4554373 4554545 -198530987 - MLT2F LTR ERVL -8 655 461 451 272 111 14 chr5 4558089 4558306 -198527226 - L1ME4a LINE L1 -248 5873 5636 24 0 0 0 chr5 4558311 4558335 -198527197 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr5 4558400 4558434 -198527098 + AT_rich Low_complexity Low_complexity 1 34 0 227 262 0 0 chr5 4558438 4558499 -198527033 + LTR66 LTR ERVL 398 458 -152 368 339 23 0 chr5 4558783 4558913 -198526619 + L1MEd LINE L1 511 643 -5562 1677 266 26 6 chr5 4558924 4559390 -198526142 + L1MD3 LINE L1 7511 7985 -10 232 328 26 70 chr5 4559403 4559674 -198525858 + L1MEd LINE L1 646 904 -5301 440 287 52 55 chr5 4559775 4560137 -198525395 + L1MEd LINE L1 981 1341 -4864 297 274 57 56 chr5 4560212 4560621 -198524911 + L1MEd LINE L1 1501 1760 -920 522 287 94 40 chr5 4560924 4561460 -198524072 + L1MEd LINE L1 2153 2665 -3550 1086 159 0 37 chr5 4561795 4561984 -198523548 + L1PA16 LINE L1 5976 6157 -9 23 0 0 0 chr5 4561984 4562007 -198523525 + AT_rich Low_complexity Low_complexity 1 23 0 826 200 0 50 chr5 4562111 4562291 -198523241 + AluJb SINE Alu 136 306 -6 754 212 232 10 chr5 4562293 4562595 -198522937 - L1ME3 LINE L1 -14 6148 5780 920 194 53 119 chr5 4562611 4562931 -198522601 + MLT1A2 LTR MaLR 26 324 -50 523 342 126 23 chr5 4563242 4563284 -198522248 + L1ME3A LINE L1 5294 5330 -840 2688 96 36 14 chr5 4563284 4563640 -198521892 + THE1B LTR MaLR 1 364 0 523 342 126 23 chr5 4563640 4564083 -198521449 + L1ME3A LINE L1 5330 5829 -341 1739 152 28 14 chr5 4564104 4564387 -198521145 + AluJb SINE Alu 1 287 -25 312 91 0 0 chr5 4566628 4566672 -198518860 + (GA)n Simple_repeat Simple_repeat 1 44 0 327 338 46 27 chr5 4566716 4566935 -198518597 - MIR SINE MIR -11 251 29 252 306 28 0 chr5 4566964 4567036 -198518496 - MER2 DNA MER2_type 0 345 272 2062 87 4 0 chr5 4567041 4567306 -198518226 + L1PB1 LINE L1 5886 6151 0 1335 177 83 0 chr5 4567347 4567612 -198517920 - MER2 DNA MER2_type -58 287 1 374 282 63 14 chr5 4568508 4568650 -198516882 - MIR SINE MIR -21 241 93 2139 116 14 0 chr5 4569287 4569579 -198515953 - AluSx SINE Alu -16 296 1 258 32 0 0 chr5 4569984 4570015 -198515517 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 506 257 32 30 chr5 4570021 4570177 -198515355 + L1MA7 LINE L1 5972 6122 -169 2344 85 7 0 chr5 4570177 4570470 -198515062 + AluY SINE Alu 1 295 -16 506 257 32 30 chr5 4570470 4570483 -198515049 + L1MA7 LINE L1 6122 6133 -158 505 198 27 0 chr5 4570584 4570695 -198514837 + L1MA7 LINE L1 6176 6289 -2 183 184 0 0 chr5 4570743 4570781 -198514751 + GA-rich Low_complexity Low_complexity 1 38 0 225 143 0 0 chr5 4572563 4572598 -198512934 + MER63 DNA MER1_type 695 729 -107 270 324 46 46 chr5 4574001 4574174 -198511358 + MIR SINE MIR 48 220 -42 444 316 57 19 chr5 4574281 4574493 -198511039 + MIR SINE MIR 40 259 -3 396 263 153 58 chr5 4575689 4575836 -198509696 - L2 LINE L2 -50 3263 3131 374 68 0 17 chr5 4575836 4575895 -198509637 + (TA)n Simple_repeat Simple_repeat 2 59 0 396 263 153 58 chr5 4575895 4576158 -198509374 - L2 LINE L2 -182 3131 2814 1971 119 80 44 chr5 4576850 4577212 -198508320 - THE1C LTR MaLR 0 375 1 293 254 127 0 chr5 4578188 4578330 -198507202 + MLT1K LTR MaLR 363 522 -66 1217 273 52 11 chr5 4578774 4579236 -198506296 - L1M4 LINE L1 -1160 4986 4506 485 303 50 54 chr5 4579562 4579859 -198505673 - HAL1 LINE L1 -842 1665 1370 564 309 12 0 chr5 4580174 4580339 -198505193 + MIR SINE MIR 32 198 -64 237 118 0 0 chr5 4580848 4580882 -198504650 + (TC)n Simple_repeat Simple_repeat 1 34 0 342 242 13 19 chr5 4580883 4581040 -198504492 + CT-rich Low_complexity Low_complexity 4 159 0 2043 129 3 0 chr5 4582332 4582627 -198502905 + AluSx SINE Alu 1 296 -16 319 132 55 0 chr5 4582653 4582744 -198502788 + (TA)n Simple_repeat Simple_repeat 1 96 0 21 0 0 0 chr5 4582940 4582961 -198502571 + AT_rich Low_complexity Low_complexity 1 21 0 479 268 157 25 chr5 4585179 4585377 -198500155 + MIR SINE MIR 10 233 -29 1628 213 7 34 chr5 4585561 4586002 -198499530 + MLT2B3 LTR ERVL 5 481 -34 700 152 30 0 chr5 4586023 4586188 -198499344 + (TCTA)n Simple_repeat Simple_repeat 4 173 0 681 184 11 17 chr5 4586211 4586390 -198499142 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 197 65 32 0 chr5 4586413 4586444 -198499088 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 583 196 13 0 chr5 4586463 4586616 -198498916 + (TCTA)n Simple_repeat Simple_repeat 3 157 0 325 117 17 33 chr5 4586617 4586677 -198498855 + MLT2B3 LTR ERVL 462 554 0 207 69 0 0 chr5 4587197 4587226 -198498306 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr5 4587795 4587817 -198497715 + AT_rich Low_complexity Low_complexity 1 22 0 884 241 50 70 chr5 4588056 4588561 -198496971 + MER34 LTR ERV1 6 585 0 379 236 36 9 chr5 4589378 4589488 -198496044 + MARNA DNA Mariner 266 378 -208 2271 100 0 13 chr5 4590258 4590567 -198494965 - AluSx SINE Alu -7 305 1 622 197 61 14 chr5 4591735 4591882 -198493650 + MLT1B LTR MaLR 8 161 -229 2743 89 22 32 chr5 4591889 4592294 -198493238 - L1PA13 LINE L1 0 6163 5763 1137 194 0 0 chr5 4592294 4592516 -198493016 + L1P LINE L1 5174 5395 -751 895 204 33 50 chr5 4592516 4592756 -198492776 + MLT1B LTR MaLR 143 378 -12 9391 164 21 5 chr5 4592953 4592973 -198492559 - L1P LINE L1 -2743 3403 3385 7353 131 10 51 chr5 4592973 4593671 -198491861 - L1PA10 LINE L1 0 6168 5443 613 100 0 0 chr5 4593671 4593751 -198491781 - MADE1 DNA Mariner 0 80 1 7353 131 10 51 chr5 4593751 4595124 -198490408 - L1PA10 LINE L1 -725 5443 4154 9391 164 21 5 chr5 4595124 4596834 -198488698 - L1P LINE L1 -2761 3385 1645 2131 149 6 6 chr5 4596841 4597170 -198488362 - THE1B LTR MaLR 0 364 36 542 15 15 0 chr5 4599481 4599548 -198485984 + (TTTTC)n Simple_repeat Simple_repeat 3 70 0 852 153 0 22 chr5 4599549 4599732 -198485800 + CT-rich Low_complexity Low_complexity 1 179 0 2245 147 3 5 chr5 4605895 4606262 -198479270 - L1PB1 LINE L1 -3 6148 5783 378 231 0 0 chr5 4606262 4606353 -198479179 + (TG)n Simple_repeat Simple_repeat 1 91 0 1360 116 1 20 chr5 4606353 4606590 -198478942 - L1PB1 LINE L1 -359 5792 5569 613 265 0 0 chr5 4607084 4607235 -198478297 - L1MB7 LINE L1 -16 6168 6018 1657 185 0 3 chr5 4609725 4610023 -198475509 - AluJo SINE Alu -1 311 15 1848 138 10 3 chr5 4611136 4611440 -198474092 + AluSx SINE Alu 1 306 -6 268 306 70 70 chr5 4612412 4612611 -198472921 + MIR SINE MIR 13 211 -51 358 303 6 43 chr5 4613081 4613243 -198472289 + L1PA10 LINE L1 5858 6013 -155 * 1668 191 57 37 chr5 4613115 4613517 -198472015 + L1MA4A LINE L1 5888 6297 -6 297 312 6 6 chr5 4614126 4614296 -198471236 + (TA)n Simple_repeat Simple_repeat 2 171 0 267 341 16 0 chr5 4614422 4614548 -198470984 + C-rich Low_complexity Low_complexity 6 133 0 233 245 0 7 chr5 4614551 4614702 -198470830 + (CA)n Simple_repeat Simple_repeat 1 150 0 216 111 0 0 chr5 4614802 4614838 -198470694 + (CA)n Simple_repeat Simple_repeat 1 36 0 2135 118 0 0 chr5 4617507 4617813 -198467719 + AluSq SINE Alu 2 307 -6 1918 228 150 110 chr5 4620598 4621154 -198464378 - L1MC3 LINE L1 -9 7776 7244 265 245 39 59 chr5 4621154 4621256 -198464276 - MLT1F1 LTR MaLR -434 133 34 1918 228 150 110 chr5 4621256 4621650 -198463882 - L1MC3 LINE L1 -541 7244 6683 204 118 29 0 chr5 4622377 4622411 -198463121 + GA-rich Low_complexity Low_complexity 2 36 0 544 249 169 80 chr5 4622501 4622780 -198462752 + MLT1H1 LTR MaLR 14 267 -288 580 288 25 0 chr5 4622780 4622978 -198462554 + MER105 DNA DNA 2 204 0 544 249 169 80 chr5 4622978 4623184 -198462348 + MLT1H1 LTR MaLR 267 542 -13 322 265 41 0 chr5 4624297 4624395 -198461137 + MIR SINE MIR 151 252 -10 1715 173 52 30 chr5 4625186 4625551 -198459981 + THE1C LTR MaLR 1 373 -2 9491 141 16 35 chr5 4625555 4627164 -198458368 + THE1C-int LTR MaLR 3 1580 0 1492 170 38 98 chr5 4627164 4627563 -198457969 + THE1C LTR MaLR 1 375 0 493 255 59 20 chr5 4629397 4629550 -198455982 + MER70B LTR ERVL 1 159 -419 * 2116 245 21 4 chr5 4629549 4630019 -198455513 + MER70B LTR ERVL 90 567 -11 331 212 29 7 chr5 4630302 4630439 -198455093 + GA-rich Low_complexity Low_complexity 2 141 0 468 175 0 0 chr5 4630540 4630637 -198454895 + GA-rich Low_complexity Low_complexity 2 98 0 267 299 11 0 chr5 4631215 4631302 -198454230 + (CA)n Simple_repeat Simple_repeat 1 88 0 2468 36 7 10 chr5 4633913 4634215 -198451317 - AluY SINE Alu -10 301 1 1367 203 6 37 chr5 4634270 4634591 -198450941 - AluJb SINE Alu -1 311 1 2045 101 0 4 chr5 4634781 4635058 -198450474 - AluSq SINE Alu -27 286 11 1866 120 0 33 chr5 4635205 4635504 -198450028 - AluSx SINE Alu -23 289 1 26 0 0 0 chr5 4635768 4635794 -198449738 + AT_rich Low_complexity Low_complexity 1 26 0 1702 173 0 13 chr5 4636279 4636585 -198448947 + AluSx SINE Alu 1 302 -10 1643 110 0 62 chr5 4636894 4637167 -198448365 + AluSg SINE Alu 49 304 -6 345 310 192 15 chr5 4637374 4637645 -198447887 + L1M4 LINE L1 5074 5392 -754 1429 219 135 12 chr5 4688003 4688419 -198397113 - MLT1C LTR MaLR 0 467 1 345 300 95 21 chr5 4688528 4688718 -198396814 - MIR SINE MIR -36 226 23 1306 210 63 30 chr5 4689512 4689874 -198395658 - MLT1A2 LTR MaLR 0 374 1 258 294 88 0 chr5 4691627 4691729 -198393803 - MIR SINE MIR -62 146 36 226 143 0 0 chr5 4692124 4692166 -198393366 - L2 LINE L2 -1 3312 3271 343 202 0 0 chr5 4692434 4692505 -198393027 - MLT1D LTR MaLR -2 593 477 292 247 112 8 chr5 4692657 4692779 -198392753 - MLT1H LTR MaLR -376 173 82 255 326 54 0 chr5 4692839 4692931 -198392601 + L2 LINE L2 3214 3310 -3 25 51 0 0 chr5 4693769 4693808 -198391724 + AT_rich Low_complexity Low_complexity 1 39 0 1499 165 32 21 chr5 4693810 4694089 -198391443 - AluJb SINE Alu -30 282 1 2179 131 0 0 chr5 4694110 4694415 -198391117 - AluSx SINE Alu -7 305 1 1242 271 32 42 chr5 4694416 4694914 -198390618 - MLT1D LTR MaLR -12 493 1 680 226 43 43 chr5 4694968 4695176 -198390356 - MER3 DNA MER1_type -1 208 1 4169 164 18 78 chr5 4697101 4698060 -198387472 + L1MB3 LINE L1 5280 6180 -3 910 253 77 33 chr5 4699342 4699678 -198385854 - MER39 LTR ERV1 0 707 357 246 242 62 62 chr5 4699699 4699827 -198385705 - MER39 LTR ERV1 -574 133 6 4549 161 46 23 chr5 4701168 4702009 -198383523 + L1MC1 LINE L1 5450 6310 -23 2743 250 40 22 chr5 4702020 4702841 -198382691 + L1ME1 LINE L1 5325 6160 -6 728 197 8 0 chr5 4703143 4703275 -198382257 + FLAM_C SINE Alu 1 133 0 373 254 18 26 chr5 4705097 4705211 -198380321 - Charlie1b DNA MER1_type -323 200 88 1154 262 29 29 chr5 4706449 4706789 -198378743 - MLT1A1 LTR MaLR 0 365 26 1525 206 41 32 chr5 4707010 4707452 -198378080 + Charlie1b DNA MER1_type 74 519 -4 213 39 0 0 chr5 4707540 4707566 -198377966 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1335 173 82 12 chr5 4707575 4707830 -198377702 - AluJo SINE Alu -24 288 16 211 257 40 0 chr5 4707872 4707946 -198377586 + CT-rich Low_complexity Low_complexity 5 81 0 306 257 49 28 chr5 4708623 4708767 -198376765 + CT-rich Low_complexity Low_complexity 2 148 0 264 184 0 0 chr5 4708842 4708891 -198376641 - Charlie1 DNA MER1_type 0 2761 2713 2474 94 46 6 chr5 4710235 4710585 -198374947 + THE1B LTR MaLR 1 364 0 189 303 0 0 chr5 4711433 4711578 -198373954 + (TG)n Simple_repeat Simple_repeat 1 145 0 1972 189 21 0 chr5 4712813 4713195 -198372337 - MLT1B LTR MaLR 0 390 1 22 56 0 0 chr5 4715628 4715664 -198369868 + AT_rich Low_complexity Low_complexity 1 36 0 2422 53 0 3 chr5 4715711 4716061 -198369471 - AluY SINE Alu 0 349 1 1387 224 48 3 chr5 4718252 4718587 -198366945 + MER89 LTR ERV1 188 537 -22 182 380 43 0 chr5 4719230 4719322 -198366210 - L3 LINE CR1 -588 989 894 1505 232 30 14 chr5 4719900 4720267 -198365265 - MLT1A2 LTR MaLR 0 374 2 1792 35 4 18 chr5 4720471 4720698 -198364834 + L1PA4 LINE L1 5932 6155 0 1908 161 146 3 chr5 4721199 4721577 -198363955 + MSTB1 LTR MaLR 1 432 0 262 336 30 8 chr5 4722250 4722384 -198363148 + MIR SINE MIR 40 176 -86 1627 65 0 0 chr5 4723187 4723387 -198362145 - L1PA8 LINE L1 -6 6166 5967 423 243 0 10 chr5 4723980 4724083 -198361449 - FLAM_A SINE Alu -9 133 32 318 275 43 72 chr5 4724298 4724436 -198361096 - MLT1H LTR MaLR -207 342 209 22 35 0 0 chr5 4724787 4724816 -198360716 + AT_rich Low_complexity Low_complexity 1 29 0 2315 247 51 33 chr5 4724951 4725644 -198359888 + L1MCa LINE L1 37 716 -5848 342 0 0 0 chr5 4725644 4725682 -198359850 + (CA)n Simple_repeat Simple_repeat 2 39 0 2315 247 51 33 chr5 4725682 4726208 -198359324 + L1MCa LINE L1 716 1991 -4573 2220 200 22 16 chr5 4726231 4726720 -198358812 + L1MC3 LINE L1 7293 7784 -1 12879 28 1 0 chr5 4727825 4729342 -198356190 - L1P LINE L1 -1702 4444 2926 1323 0 0 0 chr5 4729343 4729487 -198356045 + L1PA2 LINE L1 6009 6152 -3 922 202 33 29 chr5 4730352 4730668 -198354864 - MSTD LTR MaLR 0 396 4 745 281 86 69 chr5 4731713 4732571 -198352961 - L1MEd LINE L1 -4871 1248 427 372 291 50 50 chr5 4735900 4736120 -198349412 - MIR SINE MIR -30 232 13 1204 179 25 122 chr5 4738262 4738615 -198346917 - MLT1A1 LTR MaLR -46 319 1 2494 31 7 0 chr5 4738872 4739166 -198346366 + L1PA4 LINE L1 5860 6155 0 1375 236 120 23 chr5 4739557 4739956 -198345576 + MER31B LTR ERV1 1 438 -28 306 115 0 0 chr5 4740515 4740567 -198344965 + (CA)n Simple_repeat Simple_repeat 1 52 0 462 110 82 0 chr5 4741061 4741134 -198344398 - MADE1 DNA Mariner -1 79 1 302 306 20 0 chr5 4741510 4741608 -198343924 - MER5A DNA MER1_type -80 109 10 972 217 53 35 chr5 4741625 4741943 -198343589 - MER33 DNA MER1_type 0 324 1 325 378 67 11 chr5 4741945 4742212 -198343320 - L3 LINE CR1 -46 1531 1250 305 342 69 32 chr5 4742506 4742902 -198342630 - L3 LINE CR1 -745 832 363 406 260 16 16 chr5 4743433 4743556 -198341976 - L2 LINE L2 -4 3309 3187 22 0 0 0 chr5 4744507 4744529 -198341003 + AT_rich Low_complexity Low_complexity 1 22 0 318 106 0 0 chr5 4745062 4745109 -198340423 + (TG)n Simple_repeat Simple_repeat 1 47 0 225 211 0 0 chr5 4745121 4745173 -198340359 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 237 167 0 0 chr5 4745416 4745470 -198340062 + GA-rich Low_complexity Low_complexity 2 55 0 180 0 0 0 chr5 4747025 4747045 -198338487 + (A)n Simple_repeat Simple_repeat 1 20 0 7201 161 74 5 chr5 4747445 4749913 -198335619 + L1MA3 LINE L1 3657 6305 0 863 203 7 7 chr5 4753675 4753828 -198331704 - AluJb SINE Alu -23 289 137 1789 182 116 6 chr5 4754814 4755177 -198330355 + MER57A LTR ERV1 1 403 0 6029 111 44 0 chr5 4756201 4757189 -198328343 - L1PA13 LINE L1 -2 6161 5168 8252 214 67 29 chr5 4762701 4763675 -198321857 - L1MC1 LINE L1 -6 6607 5671 1494 116 5 14 chr5 4763675 4763891 -198321641 - AluSq SINE Alu -6 307 94 8252 214 67 29 chr5 4763891 4769228 -198316304 - L1MC1 LINE L1 -942 5671 23 2220 113 0 7 chr5 4769243 4769543 -198315989 - AluSx SINE Alu -14 298 1 24 0 0 0 chr5 4769553 4769577 -198315955 + AT_rich Low_complexity Low_complexity 1 24 0 298 196 22 0 chr5 4769624 4769716 -198315816 + (TA)n Simple_repeat Simple_repeat 2 95 0 186 143 0 0 chr5 4769870 4769905 -198315627 + (TC)n Simple_repeat Simple_repeat 1 35 0 459 0 0 0 chr5 4769905 4769956 -198315576 + (TG)n Simple_repeat Simple_repeat 2 52 0 1681 189 85 33 chr5 4769956 4770480 -198315052 - MLT2A2 LTR ERVL -5 549 2 339 25 0 0 chr5 4770481 4770521 -198315011 + (TG)n Simple_repeat Simple_repeat 2 41 0 191 408 14 7 chr5 4770640 4770787 -198314745 + MIR3 SINE MIR 20 167 -41 2248 110 0 10 chr5 4771177 4771486 -198314046 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr5 4771607 4771629 -198313903 + AT_rich Low_complexity Low_complexity 1 22 0 534 296 87 27 chr5 4771812 4772146 -198313386 - MLT1H LTR MaLR -195 354 1 189 0 0 0 chr5 4772448 4772469 -198313063 + (A)n Simple_repeat Simple_repeat 1 21 0 1897 135 7 0 chr5 4772520 4772801 -198312731 - AluSx SINE Alu -7 305 23 2335 97 0 0 chr5 4773304 4773602 -198311930 + AluSp SINE Alu 4 301 -12 360 0 0 0 chr5 4773602 4773642 -198311890 + (TG)n Simple_repeat Simple_repeat 2 41 0 318 190 20 30 chr5 4774585 4774685 -198310847 + A-rich Low_complexity Low_complexity 6 104 0 269 82 20 0 chr5 4775645 4775694 -198309838 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 3211 100 20 11 chr5 4775736 4776176 -198309356 - MLT2A1 LTR ERVL 0 444 1 43342 84 7 9 chr5 4776176 4781843 -198303689 - HERVL-A1 LTR ERVL 0 5654 1 3078 118 18 11 chr5 4781843 4782284 -198303248 - MLT2A1 LTR ERVL 0 444 1 1803 196 17 6 chr5 4782744 4783097 -198302435 + MLT1A1 LTR MaLR 1 357 -8 201 298 21 32 chr5 4783372 4783466 -198302066 + MIR SINE MIR 71 163 -99 650 90 0 0 chr5 4783533 4783622 -198301910 + L1PA8 LINE L1 6084 6172 0 1607 164 7 31 chr5 4783998 4784314 -198301218 + AluJo SINE Alu 4 312 0 497 128 26 0 chr5 4784396 4784474 -198301058 - MER116 DNA Mariner 0 80 1 23 54 0 0 chr5 4784502 4784539 -198300993 + AT_rich Low_complexity Low_complexity 1 37 0 260 184 0 0 chr5 4785858 4785907 -198299625 - MER4-int LTR ERV1 -5436 1162 1114 597 249 0 0 chr5 4785932 4786109 -198299423 + (CA)n Simple_repeat Simple_repeat 2 178 0 251 267 124 0 chr5 4786764 4786869 -198298663 - MER45A DNA AcHobo 0 178 61 21 57 0 0 chr5 4786977 4787012 -198298520 + AT_rich Low_complexity Low_complexity 1 35 0 277 62 42 0 chr5 4789325 4789373 -198296159 + (GA)n Simple_repeat Simple_repeat 2 51 0 1343 215 0 19 chr5 4792588 4792853 -198292679 - AluJo SINE Alu -52 260 1 1604 114 76 76 chr5 4792901 4793190 -198292342 + AluSx SINE Alu 1 289 -23 627 218 156 0 chr5 4793229 4793408 -198292124 - MER20 DNA MER1_type -12 207 1 21 71 0 0 chr5 4794456 4794498 -198291034 + AT_rich Low_complexity Low_complexity 1 42 0 2609 222 88 5 chr5 4794973 4795634 -198289898 - L1MD1 LINE L1 -9 6233 5518 2417 146 5 16 chr5 4795727 4796104 -198289428 + THE1C LTR MaLR 1 373 -2 421 223 78 105 chr5 4796341 4796575 -198288957 + L1ME LINE L1 1339 1690 -5257 1886 147 29 0 chr5 4796575 4796854 -198288678 - AluSx SINE Alu -23 289 3 421 223 78 105 chr5 4796854 4796951 -198288581 + L1ME LINE L1 1690 1788 -5159 1755 276 67 88 chr5 4796966 4797927 -198287605 + L1ME LINE L1 396 1335 -5103 675 218 86 47 chr5 4797981 4798018 -198287514 + L1ME LINE L1 1899 1933 -5024 450 0 0 0 chr5 4798018 4798068 -198287464 + (CA)n Simple_repeat Simple_repeat 1 50 0 675 218 86 47 chr5 4798068 4798287 -198287245 + L1ME LINE L1 1933 2165 -4792 * 3241 225 38 25 chr5 4798280 4799226 -198286306 + L1MC3 LINE L1 5668 6625 -1160 268 83 0 62 chr5 4799248 4799296 -198286236 - MLT2A2 LTR ERVL -10 443 399 225 282 13 13 chr5 4800143 4800240 -198285292 + GA-rich Low_complexity Low_complexity 2 149 0 558 218 3 9 chr5 4801938 4802276 -198283256 + (TA)n Simple_repeat Simple_repeat 1 335 0 345 270 22 0 chr5 4802276 4802365 -198283167 - L1MC4 LINE L1 -1337 6705 6615 318 277 0 43 chr5 4802342 4802436 -198283096 + L1MC4 LINE L1 6614 6703 -1339 * 301 209 15 0 chr5 4802376 4802443 -198283089 - L1MCa LINE L1 -4363 2063 1996 * 1031 302 158 39 chr5 4802470 4803951 -198281581 - L2 LINE L2 -4 3309 1610 2436 201 43 23 chr5 4806107 4806713 -198278819 - L1MB8 LINE L1 -5 6173 5556 22 0 0 0 chr5 4807408 4807430 -198278102 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr5 4808638 4808661 -198276871 + AT_rich Low_complexity Low_complexity 1 23 0 205 128 43 0 chr5 4810184 4810231 -198275301 + GA-rich Low_complexity Low_complexity 2 50 0 27 0 0 0 chr5 4810336 4810363 -198275169 + AT_rich Low_complexity Low_complexity 1 27 0 5465 72 1 0 chr5 4810374 4811097 -198274435 - HERVL LTR ERVL -1637 4017 3294 256 368 43 29 chr5 4812459 4812739 -198272793 + LTR67 LTR ERVL 18 301 -256 237 346 15 31 chr5 4816798 4816928 -198268604 + L2 LINE L2 3181 3308 -5 1670 181 6 49 chr5 4817356 4817706 -198267826 - AluJb SINE Alu 0 312 1 887 230 165 42 chr5 4819653 4820091 -198265441 - MLT1D LTR MaLR -1 625 8 344 172 0 0 chr5 4822940 4823004 -198262528 + Tigger3(Golem) DNA MER2_type 42 105 -2924 * 947 152 12 0 chr5 4822995 4823160 -198262372 + Tigger3(Golem) DNA MER2_type 2802 2968 -61 1436 113 54 14 chr5 4823552 4823773 -198261759 + MER30 DNA MER1_type 1 230 0 318 345 92 6 chr5 4824392 4824566 -198260966 - MER5A DNA MER1_type 0 189 1 263 242 11 77 chr5 4824877 4824968 -198260564 + MIR SINE MIR 178 262 0 2199 115 142 0 chr5 4825022 4825395 -198260137 - MSTA LTR MaLR -2 426 1 418 171 0 27 chr5 4826186 4826297 -198259235 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 2033 126 129 26 chr5 4826732 4827120 -198258412 - MSTA LTR MaLR 0 428 1 1670 159 24 24 chr5 4827397 4827716 -198257816 - AluJb SINE Alu 0 312 1 235 322 16 33 chr5 4827838 4827959 -198257573 - L1M4 LINE L1 -3584 2562 2444 21 36 0 0 chr5 4828248 4828276 -198257256 + AT_rich Low_complexity Low_complexity 1 28 0 308 250 80 8 chr5 4829563 4829703 -198255829 + MLT1H LTR MaLR 421 593 -2 30 59 0 0 chr5 4829858 4829909 -198255623 + AT_rich Low_complexity Low_complexity 1 51 0 313 173 0 29 chr5 4830699 4830772 -198254760 - L1MCa LINE L1 -1339 6983 2006 2546 111 0 3 chr5 4830779 4831150 -198254382 - MLT2A1 LTR ERVL -74 370 1 284 230 0 124 chr5 4831150 4831263 -198254269 + L1MC3 LINE L1 6627 6725 -1060 757 203 0 14 chr5 4831263 4831401 -198254131 - FLAM_C SINE Alu -5 138 3 3042 244 58 22 chr5 4831402 4832427 -198253105 + L1MC3 LINE L1 6715 7775 -10 1089 285 95 58 chr5 4832438 4835211 -198250321 + L1MEc LINE L1 1069 3919 -2296 1473 308 58 9 chr5 4835861 4836847 -198248685 + L1MEc LINE L1 3881 4914 -1301 4350 188 11 26 chr5 4837523 4838997 -198246535 - L1MA6 LINE L1 0 6300 4850 921 162 11 0 chr5 4838989 4839174 -198246358 + L1 LINE L1 3961 4147 -1999 * 180 97 0 0 chr5 4839803 4839834 -198245698 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 23 33 0 0 chr5 4841933 4841963 -198243569 + AT_rich Low_complexity Low_complexity 1 30 0 2187 99 17 0 chr5 4842627 4842919 -198242613 - AluSc SINE Alu -12 297 1 336 24 0 0 chr5 4843671 4843712 -198241820 + (CA)n Simple_repeat Simple_repeat 2 42 0 248 197 45 45 chr5 4844433 4844499 -198241033 + MIR SINE MIR 87 152 -110 1483 237 2 14 chr5 4845150 4845588 -198239944 - L1 LINE L1 -1034 5112 4680 25 0 0 0 chr5 4845616 4845641 -198239891 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr5 4845662 4845685 -198239847 + AT_rich Low_complexity Low_complexity 1 23 0 2121 98 22 182 chr5 4845860 4846399 -198239133 + MLT2A2 LTR ERVL 1 453 0 2197 108 17 0 chr5 4848526 4848822 -198236710 - AluSq SINE Alu -12 301 1 2062 106 4 7 chr5 4848866 4849140 -198236392 - AluSg SINE Alu -18 292 20 1780 166 3 7 chr5 4851675 4851986 -198233546 - AluSx SINE Alu 0 310 1 23 0 0 0 chr5 4855192 4855215 -198230317 + AT_rich Low_complexity Low_complexity 1 23 0 2085 141 0 3 chr5 4858133 4858432 -198227100 + AluSx SINE Alu 1 298 -14 309 298 32 8 chr5 4861197 4861321 -198224211 - MIR SINE MIR -19 243 117 214 254 32 79 chr5 4862076 4862202 -198223330 - L2 LINE L2 -555 2759 2640 362 337 0 23 chr5 4862383 4862735 -198222797 + (CA)n Simple_repeat Simple_repeat 1 343 0 311 312 13 26 chr5 4862747 4862901 -198222631 + (CA)n Simple_repeat Simple_repeat 1 152 0 298 346 12 12 chr5 4862944 4863106 -198222426 + (CA)n Simple_repeat Simple_repeat 1 162 0 194 319 42 56 chr5 4865482 4865626 -198219906 + L2 LINE L2 3163 3304 -9 1571 215 24 6 chr5 4866410 4866749 -198218783 + MLT2C1 LTR ERVL 5 349 -48 245 178 0 22 chr5 4866800 4866862 -198218670 + MLT2C1 LTR ERVL 357 397 0 289 345 0 9 chr5 4867165 4867278 -198218254 + L2 LINE L2 3193 3304 -9 389 211 21 18 chr5 4868237 4868578 -198216954 + (TAGA)n Simple_repeat Simple_repeat 1 342 0 901 126 11 0 chr5 4868622 4868797 -198216735 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 584 70 12 0 chr5 4868827 4868913 -198216619 + (TAGA)n Simple_repeat Simple_repeat 1 87 0 1911 122 3 59 chr5 4870090 4870394 -198215138 - AluSx SINE Alu -21 291 5 411 153 0 48 chr5 4874473 4874662 -198210870 + (TA)n Simple_repeat Simple_repeat 1 180 0 286 105 0 0 chr5 4874662 4874700 -198210832 + (CA)n Simple_repeat Simple_repeat 1 38 0 2063 128 28 0 chr5 4875676 4875966 -198209566 + AluSq SINE Alu 1 298 -15 2542 113 8 8 chr5 4876264 4876628 -198208904 + THE1B LTR MaLR 1 364 0 1647 207 114 34 chr5 4880407 4880847 -198204685 - L1MB2 LINE L1 -2 6169 5695 648 239 0 0 chr5 4880885 4881015 -198204517 + FLAM_A SINE Alu 1 130 -3 305 327 138 11 chr5 4881502 4881762 -198203770 - MLT1J1 LTR MaLR -1 445 153 3774 180 46 18 chr5 4885086 4885868 -198199664 - Tigger3(Golem) DNA MER2_type 0 3029 2226 328 235 25 12 chr5 4885866 4885947 -198199585 - Tigger3(Golem) DNA MER2_type -2947 82 1 * 22 35 0 0 chr5 4887231 4887260 -198198272 + AT_rich Low_complexity Low_complexity 1 29 0 1943 167 6 13 chr5 4889677 4890075 -198195457 + AluSx SINE Alu 1 396 0 795 273 28 0 chr5 4890206 4890422 -198195110 - MER58A DNA MER1_type 0 224 3 194 327 0 0 chr5 4891930 4891982 -198193550 + L2 LINE L2 3195 3246 -67 23 0 0 0 chr5 4892123 4892146 -198193386 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr5 4892224 4892259 -198193273 + AT_rich Low_complexity Low_complexity 1 35 0 5819 107 53 6 chr5 4892574 4893474 -198192058 - L1PA10 LINE L1 -7 6161 5226 824 139 21 3 chr5 4893474 4893625 -198191907 + L1P LINE L1 3602 3750 -2396 359 266 186 0 chr5 4893973 4894097 -198191435 - LTR16C LTR ERVL -248 243 97 1965 142 44 0 chr5 4894255 4894550 -198190982 - AluY SINE Alu -3 308 1 23 0 0 0 chr5 4894809 4894832 -198190700 + AT_rich Low_complexity Low_complexity 1 23 0 250 296 57 0 chr5 4894869 4895028 -198190504 + L1MCc LINE L1 1369 1536 -4887 188 301 0 0 chr5 4895093 4895166 -198190366 - L2 LINE L2 0 3272 3200 210 191 0 0 chr5 4899815 4899857 -198185675 + T-rich Low_complexity Low_complexity 1 42 0 235 231 19 0 chr5 4901071 4901123 -198184409 + GA-rich Low_complexity Low_complexity 4 56 0 2128 82 11 4 chr5 4901298 4901600 -198183932 + AluY SINE Alu 1 304 0 21398 163 21 18 chr5 4902889 4905579 -198179953 + L1M1 LINE L1 12 2693 -4872 2472 170 26 5 chr5 4905579 4905996 -198179536 + MSTA LTR MaLR 1 426 -2 21398 163 21 18 chr5 4905996 4907294 -198178238 + L1M1 LINE L1 2693 4018 -3547 1286 142 5 5 chr5 4907294 4907512 -198178020 + L1MA2 LINE L1 6087 6304 0 21398 163 21 18 chr5 4907512 4907529 -198178003 + L1M1 LINE L1 4018 4033 -3532 2500 181 49 19 chr5 4907551 4908038 -198177494 + LTR26B LTR ERV1 30 531 0 2244 135 0 0 chr5 4909702 4910014 -198175518 + AluSx SINE Alu 1 312 0 5504 144 19 32 chr5 4910591 4911526 -198174006 + MER49 LTR ERV1 1 923 0 255 224 15 15 chr5 4911839 4911906 -198173626 + GA-rich Low_complexity Low_complexity 2 68 0 5515 162 12 17 chr5 4912605 4912963 -198172569 - L1PB1 LINE L1 0 6151 5793 311 18 71 0 chr5 4912963 4913019 -198172513 + (TA)n Simple_repeat Simple_repeat 2 61 0 5515 162 12 17 chr5 4913019 4914397 -198171135 - L1PB1 LINE L1 -358 5793 4427 * 5761 217 13 4 chr5 4914396 4915683 -198169849 + L1PB1 LINE L1 4516 5814 -1751 820 153 0 16 chr5 4916566 4916690 -198168842 - FLAM_C SINE Alu -11 122 1 24 0 0 0 chr5 4917266 4917290 -198168242 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr5 4917711 4917742 -198167790 + AT_rich Low_complexity Low_complexity 1 31 0 191 250 0 16 chr5 4917757 4917821 -198167711 + CT-rich Low_complexity Low_complexity 3 65 0 297 0 0 0 chr5 4918710 4918743 -198166789 + (TG)n Simple_repeat Simple_repeat 1 33 0 244 190 17 0 chr5 4918922 4918980 -198166552 + MER113 DNA MER1_type? 159 217 -304 1304 201 41 106 chr5 4919557 4919974 -198165558 + MLT1B LTR MaLR 1 390 0 342 290 38 30 chr5 4920017 4920148 -198165384 + L2 LINE L2 3182 3313 0 2152 196 27 7 chr5 4920999 4921413 -198164119 + MSTB LTR MaLR 1 422 -4 184 315 0 19 chr5 4924769 4924823 -198160709 + L2 LINE L2 3210 3262 -10 863 213 80 36 chr5 4927769 4928146 -198157386 - MLT1E1 LTR MaLR -2 591 174 1216 241 40 54 chr5 4928146 4928516 -198157016 - MLT1A1 LTR MaLR 0 365 1 863 213 80 36 chr5 4928516 4928587 -198156945 - MLT1E1 LTR MaLR -419 174 108 345 271 37 28 chr5 4928556 4928663 -198156869 - MLT1E LTR MaLR -427 166 59 * 426 313 56 0 chr5 4928947 4929145 -198156387 + LTR16C LTR ERVL 283 491 0 1502 183 54 0 chr5 4929205 4929447 -198156085 - MLT1C LTR MaLR -12 455 195 192 40 0 0 chr5 4929447 4929472 -198156060 + (TG)n Simple_repeat Simple_repeat 2 26 0 1502 183 54 0 chr5 4929472 4929508 -198156024 - MLT1C LTR MaLR -272 195 162 1137 167 15 0 chr5 4929576 4929780 -198155752 + L1MA4 LINE L1 6060 6266 -34 7650 246 61 45 chr5 4929782 4930534 -198154998 - L1 LINE L1 -1849 4501 3763 2031 125 3 0 chr5 4930534 4930830 -198154702 - AluY SINE Alu -4 307 11 7650 246 61 45 chr5 4930830 4932495 -198153037 - L1 LINE L1 -2587 3763 2127 2027 121 24 3 chr5 4932495 4932784 -198152748 - AluSx SINE Alu -17 295 1 7650 246 61 45 chr5 4932784 4933994 -198151538 - L1 LINE L1 -4223 2127 1053 1480 168 44 0 chr5 4933994 4934244 -198151288 + AluJb SINE Alu 43 303 -9 7650 246 61 45 chr5 4934244 4935311 -198150221 - L1 LINE L1 -5297 1053 5 211 209 45 0 chr5 4935420 4935487 -198150045 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 272 298 24 0 chr5 4935489 4935573 -198149959 + L1MEc LINE L1 118 203 -6193 331 359 18 12 chr5 4935612 4935779 -198149753 + L1MEc LINE L1 261 428 -5968 1090 278 35 12 chr5 4935945 4936283 -198149249 - L1MC/D LINE L1 -2208 5600 5255 284 309 36 47 chr5 4936397 4936675 -198148857 - L1MC/D LINE L1 -1115 5031 4757 2105 188 9 0 chr5 4936690 4937035 -198148497 - MER7A DNA MER2_type 0 346 1 507 311 117 30 chr5 4937201 4937802 -198147730 + L2 LINE L2 2662 3312 -1 489 296 5 7 chr5 4938273 4938736 -198146796 + (CA)n Simple_repeat Simple_repeat 1 461 0 254 292 6 0 chr5 4938794 4938955 -198146577 + (CA)n Simple_repeat Simple_repeat 1 162 0 186 189 0 0 chr5 4939483 4939520 -198146012 + (CAATA)n Simple_repeat Simple_repeat 2 38 0 1840 121 10 34 chr5 4942203 4942501 -198143031 - AluSx SINE Alu -21 291 1 238 330 154 0 chr5 4943614 4943705 -198141827 - MIR SINE MIR -88 120 16 461 351 20 15 chr5 4944349 4944551 -198140981 + MIR SINE MIR 48 250 -12 747 188 0 0 chr5 4945161 4945337 -198140195 + (TG)n Simple_repeat Simple_repeat 2 177 0 290 340 10 0 chr5 4945999 4946102 -198139430 + MIR SINE MIR 146 249 -13 200 33 0 33 chr5 4947421 4947451 -198138081 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 1473 181 63 20 chr5 4947456 4947484 -198138048 - AluJb SINE Alu 0 312 287 1068 44 22 39 chr5 4947484 4947666 -198137866 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1473 181 63 20 chr5 4947666 4947936 -198137596 - AluJb SINE Alu -25 287 1 2659 52 9 0 chr5 4948494 4948824 -198136708 + L1PA7 LINE L1 5817 6149 -5 4492 104 14 1 chr5 4948866 4949522 -198136010 + L1PB2 LINE L1 5486 6149 -2 424 270 15 7 chr5 4950688 4950825 -198134707 + (CA)n Simple_repeat Simple_repeat 2 139 0 406 294 106 42 chr5 4951387 4951652 -198133880 + L3b LINE CR1 1184 1465 -118 391 227 23 0 chr5 4951825 4951913 -198133619 - L1ME1 LINE L1 -20 6146 6057 352 173 111 0 chr5 4953154 4953235 -198132297 - L1MC4 LINE L1 -1339 6703 6614 309 262 71 0 chr5 4953251 4953335 -198132197 - L1MC4 LINE L1 -1339 6703 6614 300 267 47 0 chr5 4953271 4953357 -198132175 + L1MC4 LINE L1 6614 6703 -1339 * 613 166 6 30 chr5 4953477 4953646 -198131886 + CT-rich Low_complexity Low_complexity 1 165 0 25 0 0 0 chr5 4954617 4954642 -198130890 + AT_rich Low_complexity Low_complexity 1 25 0 2124 110 4 0 chr5 4954906 4955230 -198130302 - AluSx SINE Alu 0 325 1 491 191 48 40 chr5 4956328 4956454 -198129078 + MER5A DNA MER1_type 3 129 -60 1699 194 39 31 chr5 4956517 4956904 -198128628 + MLT1B LTR MaLR 1 390 0 2304 106 6 3 chr5 4956991 4957302 -198128230 + AluSx SINE Alu 1 312 0 198 323 85 15 chr5 4957695 4957825 -198127707 - MIR SINE MIR -44 218 80 23 0 0 0 chr5 4958208 4958231 -198127301 + AT_rich Low_complexity Low_complexity 1 23 0 439 253 88 24 chr5 4959874 4960044 -198125488 - L3b LINE CR1 -123 1460 1280 530 100 17 133 chr5 4960067 4960187 -198125345 - AluSg/x SINE Alu -17 292 187 1820 103 0 9 chr5 4960187 4960420 -198125112 - AluSc SINE Alu -78 231 1 338 264 75 57 chr5 4962236 4962395 -198123137 - LTR16A1 LTR ERVL -30 427 266 991 224 69 114 chr5 4962751 4963219 -198122313 - MLT1D LTR MaLR -16 434 4 2104 120 0 3 chr5 4964438 4964772 -198120760 + AluSx SINE Alu 1 333 0 258 186 147 85 chr5 4965485 4965614 -198119918 - MLT1H LTR MaLR -28 521 385 896 219 47 9 chr5 4966250 4966483 -198119049 + MLT1C LTR MaLR 1 242 -225 217 286 37 62 chr5 4966687 4966775 -198118757 + MIR SINE MIR 70 154 -108 1584 229 87 18 chr5 4966775 4967212 -198118320 - MLT1C LTR MaLR 0 467 1 217 286 37 62 chr5 4967212 4967284 -198118248 + MIR SINE MIR 154 226 -36 1916 155 0 10 chr5 4969577 4969886 -198115646 - AluSx SINE Alu -4 308 3 798 187 48 17 chr5 4969944 4970214 -198115318 - MLT1B LTR MaLR 0 390 6 21 0 0 0 chr5 4970251 4970272 -198115260 + AT_rich Low_complexity Low_complexity 1 21 0 802 186 19 86 chr5 4970344 4970379 -198115153 + MER58A DNA MER1_type 29 65 -2355 2305 41 0 11 chr5 4970379 4970647 -198114885 - AluY SINE Alu -5 306 42 802 186 19 86 chr5 4970647 4970821 -198114711 + MER58A DNA MER1_type 65 224 0 896 196 121 46 chr5 4970826 4971107 -198114425 + MER33 DNA MER1_type 1 302 -22 1131 111 0 0 chr5 4971722 4971875 -198113657 + AluSq SINE Alu 153 305 -8 200 173 19 19 chr5 4971889 4971941 -198113591 + T-rich Low_complexity Low_complexity 2 53 0 231 353 7 0 chr5 4972685 4972821 -198112711 + (CA)n Simple_repeat Simple_repeat 1 137 0 1381 178 67 38 chr5 4973072 4973277 -198112255 - MER47A DNA MER2_type -1969 354 134 642 222 0 0 chr5 4973277 4973394 -198112138 + FLAM_C SINE Alu 1 117 -16 1381 178 67 38 chr5 4973394 4973531 -198112001 - MER47A DNA MER2_type -2189 134 2 300 316 89 41 chr5 4974687 4975149 -198110383 + L1MC/D LINE L1 5254 5737 -2071 357 291 96 25 chr5 4976588 4976787 -198108745 + MIR SINE MIR 32 244 -18 1552 209 3 0 chr5 4977669 4978127 -198107405 - AluJo SINE Alu 0 465 7 5730 123 22 2 chr5 4978144 4979019 -198106513 + L1PA13 LINE L1 5279 6160 -3 240 60 80 0 chr5 4979652 4979702 -198105830 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 2106 94 7 0 chr5 4979703 4979979 -198105553 - AluSp SINE Alu -35 278 1 810 193 92 18 chr5 4981095 4981313 -198104219 + MER96B DNA MER1_type? 3 236 -181 247 179 30 15 chr5 4981482 4981549 -198103983 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 2726 211 58 53 chr5 4983163 4984043 -198101489 + L1ME2 LINE L1 5280 6163 -1 327 346 0 7 chr5 4984647 4984783 -198100749 - L2 LINE L2 0 3272 3138 2022 116 16 7 chr5 4985333 4985636 -198099896 - AluSc SINE Alu -1 308 3 1741 168 0 29 chr5 4987742 4988058 -198097474 - AluJb SINE Alu -5 307 1 398 304 7 15 chr5 4988852 4988987 -198096545 - MIR SINE MIR -55 153 20 184 276 161 0 chr5 4990588 4990675 -198094857 - MIR SINE MIR -131 131 31 276 204 0 0 chr5 4992364 4992418 -198093114 - L1PA11 LINE L1 -1028 5118 5065 5800 130 16 4 chr5 4992418 4993453 -198092079 + L1PA11 LINE L1 5129 6174 0 231 387 15 0 chr5 4993725 4993862 -198091670 + MIR SINE MIR 17 155 -107 501 198 0 0 chr5 4994543 4994644 -198090888 - AluJb SINE Alu 0 312 212 2197 118 0 3 chr5 4996295 4996591 -198088941 - AluSx SINE Alu -17 295 1 2228 174 46 16 chr5 4996739 4997240 -198088292 - L1MA9 LINE L1 -6 6306 5791 458 265 53 0 chr5 4997095 4997265 -198088267 - L1PA15 LINE L1 -227 5938 5760 459 246 49 0 chr5 4997391 4997513 -198088019 - MIR SINE MIR -71 191 64 353 125 0 0 chr5 4997554 4997610 -198087922 - U2 snRNA snRNA -128 60 5 5002 146 3 8 chr5 4997610 4998491 -198087041 + L1PA10 LINE L1 4088 4964 -1182 1934 133 47 9 chr5 4998494 4998833 -198086699 - THE1C LTR MaLR -23 352 1 6342 92 8 1 chr5 4998841 5000017 -198085515 + L1PA10 LINE L1 4966 6157 -11 2591 42 0 6 chr5 5001796 5002109 -198083423 + AluY SINE Alu 1 311 0 24 0 0 0 chr5 5004334 5004358 -198081174 + AT_rich Low_complexity Low_complexity 1 24 0 5080 19 3 0 chr5 5006544 5007133 -198078399 + L1PA3 LINE L1 5565 6155 0 34 24 0 0 chr5 5007137 5007178 -198078354 + AT_rich Low_complexity Low_complexity 1 41 0 2449 183 41 33 chr5 5008086 5008590 -198076942 + MLT2B3 LTR ERVL 2 512 -42 435 100 0 0 chr5 5008590 5008660 -198076872 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 2449 183 41 33 chr5 5008660 5008696 -198076836 + MLT2B3 LTR ERVL 512 546 -8 262 236 0 22 chr5 5008697 5008786 -198076746 + (CATATA)n Simple_repeat Simple_repeat 6 92 0 753 209 0 37 chr5 5008813 5008976 -198076556 - MER2 DNA MER2_type -183 162 6 279 272 172 28 chr5 5009959 5010139 -198075393 + MLT1H LTR MaLR 79 284 -265 2055 111 50 10 chr5 5010573 5010871 -198074661 - AluSg SINE Alu 0 310 1 27 62 0 0 chr5 5011176 5011224 -198074308 + AT_rich Low_complexity Low_complexity 1 48 0 877 238 49 8 chr5 5011371 5011615 -198073917 + LTR53 LTR ERVL 1 254 -265 406 177 62 9 chr5 5011619 5011732 -198073800 + MLT1A1 LTR MaLR 5 123 -242 1138 216 0 4 chr5 5011932 5012177 -198073355 + MLT1A1 LTR MaLR 122 365 0 1028 203 103 0 chr5 5012180 5012422 -198073110 + LTR53 LTR ERVL 253 519 0 2385 104 0 0 chr5 5013249 5013558 -198071974 - AluSx SINE Alu -3 309 1 309 89 0 0 chr5 5013622 5013638 -198071894 + (CA)n Simple_repeat Simple_repeat 1 61 0 309 89 0 0 chr5 5013638 5013683 -198071849 + (CA)n Simple_repeat Simple_repeat 2 46 0 1145 279 91 66 chr5 5013709 5014806 -198070726 - L1MCc LINE L1 -4403 2719 1651 396 0 0 0 chr5 5014806 5014850 -198070682 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 1145 279 91 66 chr5 5014850 5015745 -198069787 - L1MCc LINE L1 -5471 1651 457 1147 289 63 20 chr5 5016034 5016591 -198068941 - L1MCc LINE L1 -5824 599 19 318 203 14 40 chr5 5016611 5016666 -198068866 + L2 LINE L2 3234 3288 -25 2437 76 0 25 chr5 5016666 5016981 -198068551 - AluY SINE Alu -4 307 1 318 203 14 40 chr5 5016981 5016999 -198068533 + L2 LINE L2 3288 3305 -8 214 200 0 0 chr5 5017714 5017754 -198067778 + T-rich Low_complexity Low_complexity 1 40 0 289 230 40 0 chr5 5019519 5019593 -198065939 + MER89 LTR ERV1 11 87 -472 * 1476 214 14 6 chr5 5019568 5019928 -198065604 + MER89 LTR ERV1 197 559 0 40 0 0 0 chr5 5021604 5021644 -198063888 + AT_rich Low_complexity Low_complexity 1 40 0 216 0 0 0 chr5 5022638 5022662 -198062870 + (CCCA)n Simple_repeat Simple_repeat 2 25 0 431 333 6 0 chr5 5023333 5023498 -198062034 - MER63B DNA MER1_type -270 166 1 2194 114 0 0 chr5 5023791 5024088 -198061444 - AluSx SINE Alu -15 297 1 21 0 0 0 chr5 5024629 5024650 -198060882 + AT_rich Low_complexity Low_complexity 1 21 0 452 84 0 14 chr5 5024707 5024778 -198060754 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 232 235 23 68 chr5 5024780 5024912 -198060620 + L1 LINE L1 3797 3922 -2224 586 306 108 54 chr5 5024941 5025516 -198060016 + L1ME3 LINE L1 3949 4554 -1592 590 292 70 46 chr5 5026440 5027476 -198058056 + L1ME3 LINE L1 4800 5858 -304 1816 205 30 5 chr5 5027494 5027898 -198057634 + MLT2C2 LTR ERVL 3 416 -48 1328 185 110 31 chr5 5028181 5028500 -198057032 + MER2 DNA MER2_type 1 344 0 1063 144 0 12 chr5 5028507 5028698 -198056834 - AluSg/x SINE Alu 0 312 134 2048 140 0 0 chr5 5028698 5028990 -198056542 - AluSg SINE Alu -17 293 2 538 264 42 14 chr5 5029292 5029436 -198056096 - MER5B DNA MER1_type -12 166 19 45 34 0 0 chr5 5030364 5030423 -198055109 + AT_rich Low_complexity Low_complexity 1 59 0 404 242 30 0 chr5 5032829 5032928 -198052604 + MIR SINE MIR 110 211 -51 1114 305 32 29 chr5 5032944 5033386 -198052146 - L2 LINE L2 -1045 2269 1827 1983 154 0 3 chr5 5033628 5033927 -198051605 + AluSx SINE Alu 1 298 -14 2679 225 72 115 chr5 5034355 5035770 -198049762 - MLT1A1-int LTR MaLR -13 1358 5 1326 227 16 40 chr5 5035774 5036148 -198049384 - MLT1A1 LTR MaLR 0 365 1 2107 218 67 19 chr5 5036168 5036666 -198048866 - MLT1E1 LTR MaLR -11 643 109 1778 201 41 41 chr5 5036666 5037133 -198048399 + MLT1C LTR MaLR 1 467 0 2107 218 67 19 chr5 5037133 5037248 -198048284 - MLT1E1 LTR MaLR -545 109 1 2486 119 11 0 chr5 5037378 5037749 -198047783 + THE1C LTR MaLR 1 375 0 358 240 16 8 chr5 5037781 5037874 -198047658 + MIR3 SINE MIR 105 199 -9 21 57 0 0 chr5 5038347 5038382 -198047150 + AT_rich Low_complexity Low_complexity 1 35 0 240 176 0 0 chr5 5038414 5038482 -198047050 + (TA)n Simple_repeat Simple_repeat 1 68 0 386 176 0 35 chr5 5039732 5039817 -198045715 - MER3 DNA MER1_type -2 207 126 957 161 57 0 chr5 5039820 5040031 -198045501 + L1MB3 LINE L1 5669 5891 -292 810 198 21 66 chr5 5040096 5040384 -198045148 - L1MA4 LINE L1 -1 6299 6025 195 267 35 69 chr5 5040568 5040684 -198044848 - MIR SINE MIR -116 146 35 28 0 0 0 chr5 5041918 5041946 -198043586 + AT_rich Low_complexity Low_complexity 1 28 0 3348 207 7 7 chr5 5042077 5042830 -198042702 - L1 LINE L1 -1884 4262 3510 4627 176 47 7 chr5 5042837 5044039 -198041493 + L1PA16 LINE L1 4900 6159 -7 2170 117 48 31 chr5 5045313 5045671 -198039861 - THE1B LTR MaLR 0 364 1 320 357 24 18 chr5 5045681 5045849 -198039683 + MIR SINE MIR 66 234 -28 243 290 117 51 chr5 5046345 5046559 -198038973 - L2 LINE L2 -812 2502 2275 1845 131 25 0 chr5 5246696 5246978 -197838554 - AluY SINE Alu -22 289 1 547 193 82 7 chr5 5247746 5247881 -197837651 + Charlie4 DNA MER1_type 5 149 -1812 230 208 125 0 chr5 5248218 5248290 -197837242 + L2 LINE L2 1135 1215 -2099 1346 262 105 62 chr5 5248299 5248701 -197836831 + L2 LINE L2 1326 1709 -1605 2088 113 3 0 chr5 5248701 5249001 -197836531 - AluSq SINE Alu -12 301 1 1346 262 105 62 chr5 5249001 5249075 -197836457 + L2 LINE L2 1709 1778 -1536 2057 148 0 0 chr5 5249075 5249386 -197836146 - AluSx SINE Alu -1 311 1 1346 262 105 62 chr5 5249386 5249756 -197835776 + L2 LINE L2 1778 2209 -1105 1672 118 0 0 chr5 5249786 5250024 -197835508 + AluSx SINE Alu 56 293 -19 2061 204 37 19 chr5 5250062 5250494 -197835038 + MER82 DNA MER2_type 37 476 -177 1465 186 45 13 chr5 5250514 5250829 -197834703 - MLT1A1 LTR MaLR -36 431 1 233 235 0 141 chr5 5250898 5250927 -197834605 + MER82 DNA MER2_type 581 612 -41 2230 97 0 3 chr5 5250927 5251226 -197834306 + AluSq SINE Alu 1 298 -15 233 235 0 141 chr5 5251226 5251281 -197834251 + MER82 DNA MER2_type 612 653 0 2035 262 85 19 chr5 5251290 5251735 -197833797 + L2 LINE L2 2227 2641 -672 1603 166 49 11 chr5 5251735 5252019 -197833513 - AluJo SINE Alu -17 295 1 2035 262 85 19 chr5 5252019 5252589 -197832943 + L2 LINE L2 2641 3313 0 287 248 176 0 chr5 5252591 5252744 -197832788 - L1M4 LINE L1 -1303 4843 4664 1743 203 15 3 chr5 5252765 5253090 -197832442 + MLT1A1 LTR MaLR 36 364 -1 488 256 84 59 chr5 5253090 5253293 -197832239 - L1MEd LINE L1 -3044 3085 2878 2252 89 7 3 chr5 5253465 5253768 -197831764 - AluSq SINE Alu -9 304 1 1370 183 36 36 chr5 5253801 5254102 -197831430 + AluJb SINE Alu 3 303 -9 489 174 12 0 chr5 5254162 5254248 -197831284 + HY1 scRNA scRNA 1 87 -25 356 306 113 18 chr5 5254377 5254606 -197830926 - L1MEd LINE L1 -5361 758 508 2614 23 3 0 chr5 5254620 5254930 -197830602 - AluY SINE Alu 0 311 1 21 36 0 0 chr5 5256712 5256740 -197828792 + AT_rich Low_complexity Low_complexity 1 28 0 1851 115 39 11 chr5 5257827 5258113 -197827419 + AluSq SINE Alu 1 294 -19 347 239 142 45 chr5 5259464 5259619 -197825913 - MIR SINE MIR -87 175 6 1333 167 123 0 chr5 5260442 5260718 -197824814 + MER2 DNA MER2_type 10 319 -26 771 222 81 0 chr5 5261124 5261309 -197824223 + Charlie1a DNA MER1_type 5 204 -1251 1529 168 28 7 chr5 5261335 5261620 -197823912 + AluJo SINE Alu 1 291 -21 1119 154 254 7 chr5 5261621 5261900 -197823632 + Charlie1a DNA MER1_type 739 1086 -369 1282 168 16 29 chr5 5261915 5262159 -197823373 + AluJo SINE Alu 1 241 -71 3878 137 49 25 chr5 5262160 5262301 -197823231 - MER50 LTR ERV1 -23 711 575 2181 101 0 7 chr5 5262301 5262609 -197822923 + AluSx SINE Alu 1 306 -6 3878 137 49 25 chr5 5262609 5263161 -197822371 - MER50 LTR ERV1 -159 575 1 396 138 0 0 chr5 5263161 5263219 -197822313 + AluJo SINE Alu 238 295 -7 1706 226 96 35 chr5 5263506 5263737 -197821795 + MLT1E2 LTR MaLR 1 216 -410 1850 131 30 0 chr5 5263737 5264035 -197821497 + AluSx SINE Alu 1 307 -5 1706 226 96 35 chr5 5264035 5264391 -197821141 + MLT1E2 LTR MaLR 216 619 -7 371 342 45 42 chr5 5264540 5264612 -197820920 + MLT1I LTR MaLR 44 114 -295 3138 122 75 58 chr5 5264612 5265081 -197820451 + MER39B LTR ERV1 5 489 -164 1629 155 30 0 chr5 5265081 5265352 -197820180 + AluJo SINE Alu 12 290 -22 3138 122 75 58 chr5 5265352 5265519 -197820013 + MER39B LTR ERV1 489 652 -1 371 342 45 42 chr5 5265519 5265759 -197819773 + MLT1I LTR MaLR 114 357 -52 1635 176 0 31 chr5 5265860 5266178 -197819354 + AluJb SINE Alu 1 308 -4 1419 171 89 0 chr5 5266652 5266910 -197818622 - MER50 LTR ERV1 -23 711 431 668 80 23 0 chr5 5266921 5267009 -197818523 - THE1C LTR MaLR -285 90 1 1751 123 31 0 chr5 5267353 5267613 -197817919 - MER50 LTR ERV1 -466 268 1 280 238 60 24 chr5 5268206 5268290 -197817242 + MLT1L LTR MaLR 527 613 -2 2804 101 0 5 chr5 5268476 5268853 -197816679 - THE1C LTR MaLR 0 375 1 986 216 96 96 chr5 5269385 5269853 -197815679 - LTR34 LTR ERV1 -4 695 136 435 180 72 18 chr5 5269931 5270042 -197815490 - MER4A LTR ERV1 -547 117 1 351 261 45 9 chr5 5270144 5270255 -197815277 + Charlie5 DNA MER1_type 34 148 -2464 2157 99 10 0 chr5 5270257 5270559 -197814973 + AluSx SINE Alu 1 305 -7 2330 187 57 41 chr5 5270565 5270918 -197814614 + Charlie5 DNA MER1_type 1975 2344 -280 2045 126 10 0 chr5 5270918 5271220 -197814312 - AluSx SINE Alu -7 305 1 2330 187 57 41 chr5 5271220 5271476 -197814056 + Charlie5 DNA MER1_type 2344 2594 -30 231 217 0 0 chr5 5271960 5272006 -197813526 - MIR SINE MIR -115 147 102 4907 161 48 9 chr5 5272010 5272872 -197812660 - MER54A LTR ERVL -6 895 1 2255 85 7 0 chr5 5273372 5273667 -197811865 - AluSx SINE Alu -15 297 1 1876 146 0 10 chr5 5273741 5274066 -197811466 - AluSx SINE Alu 0 312 1 2052 116 0 0 chr5 5274605 5274899 -197810633 - AluSx SINE Alu -18 294 1 1590 180 3 10 chr5 5275048 5275343 -197810189 - AluJo SINE Alu -19 293 1 2186 108 0 0 chr5 5275703 5276009 -197809523 + AluSx SINE Alu 1 306 -6 1813 152 13 3 chr5 5276326 5276629 -197808903 + AluJb SINE Alu 1 306 -6 2225 84 0 7 chr5 5276637 5276934 -197808598 + AluSg SINE Alu 3 297 -13 1768 113 55 4 chr5 5277321 5277595 -197807937 + AluSx SINE Alu 1 288 -24 2185 144 34 3 chr5 5278255 5278610 -197806922 + MER47A DNA MER2_type 1 366 0 1745 169 3 13 chr5 5278814 5278996 -197806536 - AluJo SINE Alu -1 311 132 2150 105 7 0 chr5 5278996 5279292 -197806240 - AluSg SINE Alu -12 298 1 1745 169 3 13 chr5 5279292 5279423 -197806109 - AluJo SINE Alu -180 132 1 2102 125 0 3 chr5 5279511 5279816 -197805716 - AluJb SINE Alu 0 312 9 246 232 295 11 chr5 5279896 5279991 -197805541 - MIR SINE MIR -55 153 32 1408 116 61 2 chr5 5280987 5281225 -197804307 + L1PB3 LINE L1 5663 5908 -246 328 324 14 28 chr5 5282416 5282561 -197802971 - MIR SINE MIR -35 227 85 377 281 57 62 chr5 5282656 5282866 -197802666 - MIR SINE MIR -43 219 11 1447 58 48 14 chr5 5283778 5283985 -197801547 - AluSq SINE Alu -21 292 79 315 281 86 97 chr5 5284121 5284481 -197801051 + L1M4c LINE L1 947 1302 -5082 352 301 18 0 chr5 5284481 5284621 -197800911 + GA-rich Low_complexity Low_complexity 1 142 0 411 212 24 0 chr5 5285811 5285896 -197799636 + MIR3 SINE MIR 73 159 -49 200 205 0 0 chr5 5286289 5286328 -197799204 + (CAT)n Simple_repeat Simple_repeat 1 39 0 23 0 0 0 chr5 5287650 5287673 -197797859 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chr5 5287739 5287783 -197797749 + AT_rich Low_complexity Low_complexity 1 44 0 201 244 0 0 chr5 5287806 5287851 -197797681 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1127 259 84 39 chr5 5288613 5288995 -197796537 - L3 LINE CR1 -108 1469 1071 1781 122 0 11 chr5 5289051 5289313 -197796219 + AluSx SINE Alu 1 259 -53 473 320 39 6 chr5 5290665 5290843 -197794689 + MIR3 SINE MIR 25 208 0 718 112 0 90 chr5 5290872 5291006 -197794526 - AluSx SINE Alu 0 310 189 938 106 0 8 chr5 5291017 5291149 -197794383 - AluSx SINE Alu -176 137 7 1375 190 58 48 chr5 5291228 5291607 -197793925 - MLT1C LTR MaLR 0 467 85 1960 125 0 10 chr5 5291895 5292190 -197793342 + AluSx SINE Alu 12 303 -9 273 280 109 7 chr5 5292266 5292405 -197793127 + MIR SINE MIR 16 164 -69 34 24 0 0 chr5 5292506 5292547 -197792985 + AT_rich Low_complexity Low_complexity 1 41 0 27 29 0 0 chr5 5293069 5293103 -197792429 + AT_rich Low_complexity Low_complexity 1 34 0 2239 102 3 0 chr5 5293485 5293789 -197791743 - AluSc SINE Alu -4 305 1 301 33 7 7 chr5 5294028 5294079 -197791453 - MADE1 DNA Mariner 0 80 47 581 278 39 42 chr5 5294172 5294378 -197791154 - MIR SINE MIR -57 205 1 193 169 68 34 chr5 5294502 5294561 -197790971 - MIR SINE MIR -36 226 166 306 248 57 38 chr5 5295106 5295211 -197790321 - L1ME4a LINE L1 -3 6118 6012 414 301 28 21 chr5 5295465 5295608 -197789924 - MIR3 SINE MIR -46 162 19 223 217 29 29 chr5 5296213 5296282 -197789250 + T-rich Low_complexity Low_complexity 4 72 0 21 0 0 0 chr5 5298423 5298444 -197787088 + AT_rich Low_complexity Low_complexity 1 21 0 183 273 18 18 chr5 5298487 5298542 -197786990 - MIR3 SINE MIR -144 64 10 2184 100 7 3 chr5 5299017 5299308 -197786224 + AluSx SINE Alu 1 292 -20 23 0 0 0 chr5 5301838 5301861 -197783671 + AT_rich Low_complexity Low_complexity 1 23 0 1595 195 10 0 chr5 5303573 5303697 -197781835 + AluJb SINE Alu 3 124 -188 369 0 0 0 chr5 5303697 5303738 -197781794 + (CA)n Simple_repeat Simple_repeat 2 42 0 1595 195 10 0 chr5 5303738 5303905 -197781627 + AluJb SINE Alu 124 297 -15 2107 131 7 0 chr5 5304236 5304533 -197780999 + AluSx SINE Alu 2 300 -12 1918 122 0 48 chr5 5304924 5305235 -197780297 - AluSx SINE Alu -16 296 1 820 159 0 57 chr5 5305263 5305420 -197780112 - AluJo SINE Alu -154 158 11 213 267 0 0 chr5 5306232 5306277 -197779255 - L2 LINE L2 -8 3305 3261 208 234 0 21 chr5 5306353 5306400 -197779132 + CT-rich Low_complexity Low_complexity 3 48 0 667 232 53 2 chr5 5306421 5306579 -197778953 - MIR SINE MIR -44 164 2 432 298 68 12 chr5 5307696 5307857 -197777675 - MIR3 SINE MIR -1 207 38 1304 153 23 23 chr5 5308107 5308323 -197777209 + AluJb SINE Alu 1 216 -96 418 167 127 40 chr5 5308323 5308449 -197777083 + Charlie5 DNA MER1_type 2447 2583 -29 187 301 63 56 chr5 5308463 5308606 -197776926 - L2 LINE L2 -1321 1993 1850 2475 147 26 5 chr5 5310352 5310775 -197774757 + Tigger2a DNA MER2_type 2 433 -1 2016 145 3 20 chr5 5311188 5311491 -197774041 + AluJb SINE Alu 2 299 -13 362 153 0 0 chr5 5312654 5312713 -197772819 - Alu SINE Alu -6 296 238 2660 139 56 20 chr5 5312713 5313266 -197772266 + MER50 LTR ERV1 1 573 -161 2188 104 0 10 chr5 5313266 5313575 -197771957 - AluSx SINE Alu -6 306 1 1771 170 10 35 chr5 5313868 5314180 -197771352 - AluJb SINE Alu -8 304 1 187 364 35 77 chr5 5314210 5314353 -197771179 - L2 LINE L2 -8 3264 3128 606 154 0 0 chr5 5314612 5314716 -197770816 + AluJb SINE Alu 202 305 -7 796 226 0 6 chr5 5315750 5315914 -197769618 - MER45A DNA AcHobo -15 163 1 590 115 0 21 chr5 5317480 5317576 -197767956 + FLAM_C SINE Alu 44 137 -6 530 169 22 88 chr5 5319088 5319224 -197766308 + L2 LINE L2 2731 2857 -457 1605 93 115 33 chr5 5319227 5319497 -197766035 + LTR9 LTR ERV1 1 292 -320 1646 105 4 13 chr5 5319497 5319726 -197765806 - AluSx SINE Alu -85 227 1 606 188 150 0 chr5 5319726 5319859 -197765673 + MER2 DNA MER2_type 193 345 0 2008 129 3 7 chr5 5319884 5320171 -197765361 - AluSx SINE Alu -26 286 1 1506 221 4 0 chr5 5321597 5321873 -197763659 - AluJo SINE Alu -14 298 22 256 316 40 0 chr5 5322571 5322647 -197762885 + MIR SINE MIR 30 108 -100 22 0 0 0 chr5 5323962 5323984 -197761548 + AT_rich Low_complexity Low_complexity 1 22 0 199 77 26 26 chr5 5324628 5324667 -197760865 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 355 367 190 29 chr5 5325628 5325939 -197759593 + L2 LINE L2 2910 3270 -2 468 320 82 5 chr5 5326116 5326310 -197759222 + MIR SINE MIR 1 209 -53 356 211 100 0 chr5 5326387 5326477 -197759055 - L1MC2 LINE L1 -29 6315 6217 1695 144 39 10 chr5 5326526 5326832 -197758700 - MER2 DNA MER2_type 0 345 31 200 33 0 33 chr5 5330283 5330313 -197755219 + (CA)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chr5 5332830 5332854 -197752678 + (A)n Simple_repeat Simple_repeat 1 24 0 1939 93 4 0 chr5 5333521 5333791 -197751741 + L1PA8 LINE L1 5902 6172 0 601 287 79 14 chr5 5336202 5336418 -197749114 - MIR SINE MIR -1 261 32 579 203 8 8 chr5 5337389 5337507 -197748025 + L2 LINE L2 2680 2797 -517 289 210 37 0 chr5 5337543 5337624 -197747908 + (TA)n Simple_repeat Simple_repeat 2 85 0 401 81 0 40 chr5 5337641 5337715 -197747817 + MADE1 DNA Mariner 10 80 0 505 255 43 140 chr5 5337740 5338112 -197747420 + L2 LINE L2 2851 3186 -127 321 313 61 0 chr5 5340597 5340696 -197744836 + L2 LINE L2 3159 3263 -9 1292 198 55 32 chr5 5342043 5342391 -197743141 + MLT1A2 LTR MaLR 1 356 -18 270 194 0 0 chr5 5345003 5345065 -197740467 + (TGAA)n Simple_repeat Simple_repeat 1 62 0 4433 70 20 2 chr5 5345124 5345736 -197739796 + L1PA8A LINE L1 5482 6104 -27 1741 153 10 27 chr5 5345852 5346146 -197739386 + AluJb SINE Alu 1 289 -23 215 40 60 20 chr5 5347263 5347313 -197738219 + (CA)n Simple_repeat Simple_repeat 2 53 0 189 0 0 0 chr5 5348275 5348296 -197737236 + (A)n Simple_repeat Simple_repeat 1 21 0 288 0 0 0 chr5 5349103 5349135 -197736397 + (A)n Simple_repeat Simple_repeat 1 32 0 22 56 0 0 chr5 5351150 5351186 -197734346 + AT_rich Low_complexity Low_complexity 1 36 0 1579 199 14 0 chr5 5351186 5351472 -197734060 - AluJo SINE Alu -22 290 1 2372 108 0 13 chr5 5353394 5353710 -197731822 + AluSx SINE Alu 1 312 0 1122 209 158 73 chr5 5356080 5356587 -197728945 - MLT1F1 LTR MaLR -23 544 1 2241 106 7 3 chr5 5359445 5359746 -197725786 - AluSq SINE Alu -11 302 1 446 314 64 29 chr5 5359817 5360021 -197725511 + Charlie8 DNA MER1_type 4 214 -2203 474 18 0 0 chr5 5361921 5361976 -197723556 + (TA)n Simple_repeat Simple_repeat 1 55 0 2297 89 0 7 chr5 5361976 5362268 -197723264 - AluSq SINE Alu -21 292 3 962 184 128 28 chr5 5362272 5362522 -197723010 + MSTB1 LTR MaLR 156 430 -2 719 234 52 16 chr5 5367015 5367207 -197718325 - MER113 DNA MER1_type? -54 467 269 462 220 43 14 chr5 5367263 5367404 -197718128 - MER113 DNA MER1_type? -371 150 6 798 230 73 0 chr5 5369047 5369251 -197716281 + MIR SINE MIR 34 252 -10 548 217 14 29 chr5 5373218 5373356 -197712176 - MIR SINE MIR -109 153 18 309 51 0 0 chr5 5373356 5373395 -197712137 + (A)n Simple_repeat Simple_repeat 1 39 0 2123 98 3 10 chr5 5374726 5375021 -197710511 - AluSq SINE Alu -19 294 2 21 0 0 0 chr5 5375204 5375225 -197710307 + AT_rich Low_complexity Low_complexity 1 21 0 214 295 124 23 chr5 5376275 5376404 -197709128 + L2 LINE L2 3171 3312 -1 372 254 68 34 chr5 5376662 5376780 -197708752 + L2 LINE L2 3143 3264 -8 1999 127 3 7 chr5 5377617 5377909 -197707623 - AluSg SINE Alu -19 291 1 2037 137 10 0 chr5 5378096 5378389 -197707143 - AluSx SINE Alu -16 296 1 2502 186 21 13 chr5 5378693 5379161 -197706371 + MER70A LTR ERVL 1 472 0 543 239 0 0 chr5 5379168 5379313 -197706219 - FLAM_A SINE Alu 0 145 1 186 133 0 0 chr5 5380220 5380250 -197705282 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 2181 101 4 0 chr5 5380250 5380527 -197705005 - AluSq SINE Alu -33 280 3 21 26 0 26 chr5 5380744 5380763 -197704769 + AT_rich Low_complexity Low_complexity 1 19 -19 2136 117 0 7 chr5 5380763 5381053 -197704479 - AluSx SINE Alu -24 288 1 21 26 0 26 chr5 5381053 5381072 -197704460 + AT_rich Low_complexity Low_complexity 19 38 0 2271 79 21 0 chr5 5381635 5381925 -197703607 + AluSx SINE Alu 1 296 -16 189 0 0 0 chr5 5382452 5382473 -197703059 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 583 238 77 0 chr5 5382735 5382903 -197702629 - MIR SINE MIR -71 191 11 3765 141 106 83 chr5 5382982 5384011 -197701521 + pTR5 LTR ERV1 742 2025 -413 402 185 34 27 chr5 5384011 5384122 -197701410 + LTR30 LTR ERV1 375 642 -80 2177 115 3 0 chr5 5384122 5384435 -197701097 + pTR5 LTR ERV1 79 392 -2046 2170 92 28 57 chr5 5384966 5385283 -197700249 + AluSq SINE Alu 6 313 0 1779 164 28 104 chr5 5386587 5386844 -197698688 - MER45B DNA AcHobo -543 1038 832 2307 97 0 0 chr5 5386844 5387132 -197698400 - AluSx SINE Alu -24 288 1 1779 164 28 104 chr5 5387132 5387343 -197698189 - MER45B DNA AcHobo -749 832 606 1234 256 93 0 chr5 5387361 5387662 -197697870 - MER45B DNA AcHobo -711 329 1 531 31 0 0 chr5 5387863 5387928 -197697604 + (TATG)n Simple_repeat Simple_repeat 4 68 0 193 278 133 0 chr5 5389537 5389627 -197695905 - MIR SINE MIR -48 214 113 252 167 0 0 chr5 5389670 5389712 -197695820 + MER2 DNA MER2_type 1 42 -303 462 177 0 0 chr5 5389713 5389792 -197695740 + MER2 DNA MER2_type 1 79 -266 662 152 27 0 chr5 5389947 5390059 -197695473 + FLAM_A SINE Alu 20 134 -8 1961 115 10 20 chr5 5390139 5390435 -197695097 - AluSx SINE Alu -19 293 1 24 0 0 0 chr5 5390533 5390557 -197694975 + AT_rich Low_complexity Low_complexity 1 24 0 1282 100 11 11 chr5 5390847 5391027 -197694505 - AluSg/x SINE Alu -13 299 120 284 185 19 0 chr5 5391346 5391400 -197694132 + MER20 DNA MER1_type 159 213 -6 201 290 32 0 chr5 5392335 5392397 -197693135 + L2 LINE L2 2905 2968 -345 333 0 0 0 chr5 5393544 5393581 -197691951 + (T)n Simple_repeat Simple_repeat 1 37 0 510 239 28 34 chr5 5393888 5394064 -197691468 + MIR SINE MIR 18 192 -70 189 200 40 0 chr5 5394114 5394164 -197691368 - MIR SINE MIR -144 118 67 1685 117 58 21 chr5 5394196 5394487 -197691045 - AluSx SINE Alu -9 303 2 829 128 15 0 chr5 5394785 5394918 -197690614 + FRAM SINE Alu 18 152 -24 1694 143 4 19 chr5 5395867 5396125 -197689407 + AluJo SINE Alu 34 287 -25 1775 180 29 45 chr5 5396818 5397006 -197688526 + L1MB8 LINE L1 5757 5946 -232 2040 117 3 43 chr5 5397006 5397331 -197688201 - AluSx SINE Alu 0 312 1 1775 180 29 45 chr5 5397331 5397571 -197687961 + L1MB8 LINE L1 5946 6177 -1 974 182 6 0 chr5 5397717 5397876 -197687656 - AluJb SINE Alu -15 297 138 870 73 15 15 chr5 5397994 5398131 -197687401 + (GGAA)n Simple_repeat Simple_repeat 2 138 0 2416 82 0 25 chr5 5398222 5398541 -197686991 + AluSx SINE Alu 2 312 0 1903 183 64 43 chr5 5398542 5398793 -197686739 - MER74A LTR ERVL -111 447 203 1838 146 58 18 chr5 5398793 5399123 -197686409 + MER61A LTR ERV1 1 343 0 1903 183 64 43 chr5 5399123 5399289 -197686243 - MER74A LTR ERVL -355 203 18 2200 131 3 6 chr5 5399289 5399601 -197685931 + AluSx SINE Alu 1 311 -1 1903 183 64 43 chr5 5399601 5399620 -197685912 - MER74A LTR ERVL -540 18 1 1418 214 79 43 chr5 5399620 5400005 -197685527 - MLT1F1 LTR MaLR -41 526 132 2309 149 81 2 chr5 5400005 5400402 -197685130 - MSTC LTR MaLR 0 428 1 1418 214 79 43 chr5 5400402 5400518 -197685014 - MLT1F1 LTR MaLR -435 132 22 450 239 127 21 chr5 5400535 5400677 -197684855 - MSTC-int LTR MaLR 0 1371 1215 1566 142 0 73 chr5 5400891 5401193 -197684339 + AluJb SINE Alu 1 280 -32 341 341 121 0 chr5 5401223 5401396 -197684136 - MSTC-int LTR MaLR -486 885 692 983 141 29 73 chr5 5401637 5401843 -197683689 + MSTB LTR MaLR 1 197 -229 1398 177 4 4 chr5 5401851 5402099 -197683433 + AluJb SINE Alu 22 269 -43 1380 150 4 45 chr5 5402108 5402374 -197683158 - AluJo SINE Alu -57 255 1 287 125 0 0 chr5 5402374 5402414 -197683118 + MSTB LTR MaLR 389 428 0 675 292 68 13 chr5 5402414 5402722 -197682810 - MSTC-int LTR MaLR -770 601 277 840 200 36 0 chr5 5402737 5402902 -197682630 + FRAM SINE Alu 1 171 -5 293 248 147 8 chr5 5402910 5403039 -197682493 - MSTC-int LTR MaLR -1221 150 4 1110 261 105 51 chr5 5403051 5403362 -197682170 - MLT1F LTR MaLR 0 542 249 201 108 0 0 chr5 5403362 5403399 -197682133 + (CA)n Simple_repeat Simple_repeat 2 38 0 1110 261 105 51 chr5 5403399 5403475 -197682057 - MLT1F LTR MaLR -293 249 179 2220 107 50 50 chr5 5403475 5403573 -197681959 + THE1B LTR MaLR 1 98 -266 2125 112 0 3 chr5 5403573 5403869 -197681663 - AluSq SINE Alu -18 295 1 2220 107 50 50 chr5 5403869 5404134 -197681398 + THE1B LTR MaLR 97 364 0 1110 261 105 51 chr5 5404134 5404259 -197681273 - MLT1F LTR MaLR -363 179 1 243 191 87 95 chr5 5404312 5404438 -197681094 + L1MC4 LINE L1 7918 8042 0 1079 134 31 76 chr5 5405189 5405412 -197680120 + AluJb SINE Alu 86 298 -14 1287 131 149 62 chr5 5405617 5405655 -197679877 - MSTC LTR MaLR 0 365 332 1958 121 0 0 chr5 5405655 5405971 -197679561 + AluSx SINE Alu 1 316 0 1287 131 149 62 chr5 5405971 5406267 -197679265 - MSTC LTR MaLR -33 332 1 482 208 10 10 chr5 5406309 5406405 -197679127 + MLT2F LTR ERVL 1 96 -567 2179 105 0 22 chr5 5406532 5406847 -197678685 + AluSx SINE Alu 1 308 -4 873 163 7 13 chr5 5406852 5407048 -197678484 + FRAM SINE Alu 1 176 0 444 259 5 53 chr5 5407199 5407388 -197678144 + CT-rich Low_complexity Low_complexity 1 180 0 273 302 9 35 chr5 5408764 5408880 -197676652 + C-rich Low_complexity Low_complexity 3 115 0 528 168 84 8 chr5 5409141 5409272 -197676260 - LTR37A LTR ERV1 0 426 286 2085 115 10 0 chr5 5409374 5409679 -197675853 + AluSx SINE Alu 5 312 0 428 190 229 45 chr5 5410275 5410454 -197675078 + LTR37A LTR ERV1 8 219 -207 671 162 0 0 chr5 5410469 5410568 -197674964 - AluJ/FLAM SINE Alu -212 100 2 3405 169 50 72 chr5 5410615 5410866 -197674666 - MER72 LTR ERV1 0 722 467 1586 166 0 30 chr5 5410866 5411161 -197674371 - AluJo SINE Alu -26 286 1 3405 169 50 72 chr5 5411161 5411633 -197673899 - MER72 LTR ERV1 -255 467 15 323 270 27 20 chr5 5411659 5411807 -197673725 + LTR37A LTR ERV1 278 426 0 4345 148 31 37 chr5 5411818 5412624 -197672908 - MER4D LTR ERV1 0 903 103 1256 146 35 22 chr5 5412648 5412874 -197672658 - AluSx SINE Alu -83 229 1 821 122 0 0 chr5 5412874 5412989 -197672543 - MER4D LTR ERV1 -788 115 1 1641 77 4 17 chr5 5413417 5413651 -197671881 + AluSg/x SINE Alu 80 310 0 354 184 116 5 chr5 5413655 5413820 -197671712 + MER21A LTR ERV1 670 929 -2 290 88 62 12 chr5 5414363 5414443 -197671089 + (TAAA)n Simple_repeat Simple_repeat 1 84 0 915 123 43 49 chr5 5414446 5414609 -197670923 - AluJo SINE Alu -38 274 113 1628 147 16 48 chr5 5414822 5415136 -197670396 - AluSx SINE Alu -8 304 1 834 193 76 0 chr5 5415136 5415307 -197670225 + MLT1F1 LTR MaLR 22 205 -362 271 156 0 0 chr5 5415334 5415379 -197670153 + MLT1F LTR MaLR 498 542 0 346 223 93 39 chr5 5415379 5415574 -197669958 - L1MC4a LINE L1 -394 7414 7193 3856 166 11 59 chr5 5416398 5417157 -197668375 - MER72 LTR ERV1 0 722 1 1904 117 0 37 chr5 5417185 5417484 -197668048 - AluSx SINE Alu -24 288 1 722 220 128 32 chr5 5417557 5417691 -197667841 - MLT1C LTR MaLR 0 467 303 2043 114 117 30 chr5 5417691 5417732 -197667800 - MSTA LTR MaLR 0 428 392 2137 107 0 32 chr5 5417732 5418042 -197667490 + AluSq SINE Alu 1 300 -13 2043 114 117 30 chr5 5418042 5418394 -197667138 - MSTA LTR MaLR -36 392 1 722 220 128 32 chr5 5418394 5418477 -197667055 - MLT1C LTR MaLR -164 303 229 578 200 57 14 chr5 5418505 5418645 -197666887 - MLT1C LTR MaLR -321 184 39 1916 138 7 0 chr5 5418716 5419012 -197666520 + AluSx SINE Alu 3 300 -12 1824 122 0 48 chr5 5419399 5419710 -197665822 - AluSx SINE Alu -16 296 1 823 147 0 57 chr5 5419738 5419895 -197665637 - AluJo SINE Alu -154 158 11 1877 155 3 0 chr5 5420351 5420647 -197664885 + AluJb SINE Alu 1 297 -15 658 190 129 95 chr5 5421136 5421368 -197664164 + MIR SINE MIR 10 249 -13 2099 157 11 11 chr5 5421700 5422048 -197663484 + MLT2C1 LTR ERVL 1 348 -49 1859 167 42 50 chr5 5422048 5422432 -197663100 - MLT1B LTR MaLR 0 390 10 380 128 64 0 chr5 5422440 5422534 -197662998 + (TCTG)n Simple_repeat Simple_repeat 1 100 0 247 137 0 137 chr5 5422534 5422607 -197662925 + MLT2C1 LTR ERVL 458 520 0 2196 111 0 7 chr5 5422718 5423025 -197662507 - AluSx SINE Alu -7 305 1 2306 74 0 3 chr5 5423087 5423383 -197662149 - AluY SINE Alu -16 295 1 2195 98 3 0 chr5 5423383 5423679 -197661853 - AluSx SINE Alu -15 297 1 591 162 0 0 chr5 5423774 5423879 -197661653 - FRAM SINE Alu -8 168 64 2164 110 3 3 chr5 5423976 5424286 -197661246 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr5 5424286 5424307 -197661225 + AT_rich Low_complexity Low_complexity 1 21 0 1004 229 85 98 chr5 5424313 5424442 -197661090 + L1ME1 LINE L1 5692 5821 -345 2269 88 0 28 chr5 5424442 5424761 -197660771 - AluSg SINE Alu 0 310 1 1004 229 85 98 chr5 5424761 5425080 -197660452 + L1ME1 LINE L1 5821 6134 -32 686 151 19 0 chr5 5425081 5425187 -197660345 + FLAM_C SINE Alu 2 109 -34 1618 171 0 16 chr5 5425259 5425569 -197659963 - AluJo SINE Alu 0 312 8 1575 129 4 0 chr5 5426032 5426264 -197659268 - AluSq SINE Alu -14 299 67 447 208 50 0 chr5 5426551 5426652 -197658880 - MLT1H LTR MaLR 0 549 444 * 915 223 30 47 chr5 5426634 5426944 -197658588 - MLT1H LTR MaLR -248 307 30 199 217 0 0 chr5 5427676 5427722 -197657810 + L2 LINE L2 2911 2956 -316 226 333 0 0 chr5 5428868 5428940 -197656592 + L2 LINE L2 2902 2973 -299 2237 196 52 5 chr5 5429341 5429785 -197655747 + L1MB7 LINE L1 5579 6043 -141 1851 101 7 35 chr5 5429937 5430246 -197655286 - AluY SINE Alu 0 305 5 29 47 0 0 chr5 5431365 5431408 -197654124 + AT_rich Low_complexity Low_complexity 1 43 0 2083 186 38 53 chr5 5431408 5431531 -197654001 + MLT1D LTR MaLR 1 124 -381 2009 101 10 10 chr5 5431531 5431551 -197653981 - AluSx SINE Alu -13 299 280 189 0 0 0 chr5 5431551 5431572 -197653960 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2009 101 10 10 chr5 5431572 5431849 -197653683 - AluSx SINE Alu -31 281 2 2083 186 38 53 chr5 5431849 5432230 -197653302 + MLT1D LTR MaLR 124 497 -8 967 242 54 0 chr5 5432414 5432637 -197652895 + L1MC4 LINE L1 6800 7034 -1008 1146 156 0 0 chr5 5432650 5432823 -197652709 - AluSq SINE Alu -140 173 1 2037 226 66 20 chr5 5432856 5433449 -197652083 + L1MC4 LINE L1 7043 7662 -380 291 227 93 0 chr5 5433495 5433570 -197651962 + L1MB4 LINE L1 5812 5893 -278 1381 149 149 15 chr5 5433570 5433831 -197651701 + AluJb SINE Alu 2 297 -5 2236 104 0 0 chr5 5433833 5434140 -197651392 + AluSx SINE Alu 3 309 -3 1410 160 73 7 chr5 5434149 5434437 -197651095 + L1MB4 LINE L1 5873 6179 -1 1181 167 26 106 chr5 5434479 5434586 -197650946 + L1MC4 LINE L1 7709 7823 -219 808 65 28 0 chr5 5434586 5434693 -197650839 + HY1 scRNA scRNA 2 111 -1 1181 167 26 106 chr5 5434693 5434706 -197650826 + L1MC4 LINE L1 7823 7835 -207 207 114 0 0 chr5 5434706 5434741 -197650791 + (TG)n Simple_repeat Simple_repeat 2 36 0 1181 167 26 106 chr5 5434741 5434757 -197650775 + L1MC4 LINE L1 7835 7851 -191 2278 99 0 0 chr5 5434757 5435060 -197650472 + AluSx SINE Alu 1 303 -9 1181 167 26 106 chr5 5435060 5435269 -197650263 + L1MC4 LINE L1 7851 8028 -14 3161 73 22 44 chr5 5435580 5436034 -197649498 + MLT2A1 LTR ERVL 1 444 0 830 235 105 17 chr5 5436129 5436423 -197649109 + L1ME3 LINE L1 5843 6162 0 1890 195 40 2 chr5 5437081 5437522 -197648010 - MER89 LTR ERV1 0 559 2 519 202 176 8 chr5 5437677 5437796 -197647736 + MER2 DNA MER2_type 206 344 -1 272 161 18 36 chr5 5438769 5438825 -197646707 - MLT1A2 LTR MaLR 0 374 320 1031 139 0 0 chr5 5438840 5438984 -197646548 - MLT1A2 LTR MaLR -227 147 4 1530 158 99 56 chr5 5439199 5439388 -197646144 + MER2 DNA MER2_type 9 219 -126 1739 132 35 17 chr5 5439388 5439676 -197645856 - AluJo SINE Alu -19 293 1 1530 158 99 56 chr5 5439676 5439809 -197645723 + MER2 DNA MER2_type 219 345 0 1898 129 3 7 chr5 5439834 5440121 -197645411 - AluSx SINE Alu -26 286 1 911 192 124 1 chr5 5440363 5440580 -197644952 - MLT1D LTR MaLR -2 503 234 419 127 0 0 chr5 5440580 5440635 -197644897 + AluSg/x SINE Alu 196 250 -62 530 238 56 75 chr5 5440894 5441010 -197644522 + L1MC5 LINE L1 7273 7390 -571 2069 104 0 52 chr5 5441010 5441338 -197644194 + AluSx SINE Alu 1 311 -1 530 238 56 75 chr5 5441338 5441689 -197643843 + L1MC5 LINE L1 7390 7613 -348 1741 170 7 0 chr5 5441806 5442100 -197643432 + AluSx SINE Alu 1 296 -16 926 216 56 173 chr5 5442276 5442617 -197642915 + L2 LINE L2 2709 3041 -272 637 39 0 0 chr5 5442617 5442695 -197642837 + AluY SINE Alu 221 298 -11 926 216 56 173 chr5 5442695 5442940 -197642592 + L2 LINE L2 3041 3313 0 21 0 0 0 chr5 5443427 5443448 -197642084 + AT_rich Low_complexity Low_complexity 1 21 0 211 226 151 0 chr5 5443517 5443570 -197641962 + MIR3 SINE MIR 127 187 -21 22 0 0 0 chr5 5443932 5443954 -197641578 + AT_rich Low_complexity Low_complexity 1 22 0 2016 117 0 0 chr5 5443966 5444323 -197641209 + AluSx SINE Alu 1 357 0 675 286 106 0 chr5 5444813 5445040 -197640492 + MIR SINE MIR 6 256 -6 460 292 99 5 chr5 5445477 5445669 -197639863 + MIR SINE MIR 1 210 -52 30 77 0 0 chr5 5446495 5446560 -197638972 + GC_rich Low_complexity Low_complexity 1 65 0 193 93 0 47 chr5 5446880 5446923 -197638609 + (GGGAGA)n Simple_repeat Simple_repeat 3 43 0 817 165 0 122 chr5 5448133 5448321 -197637211 - FRAM SINE Alu -1 165 1 232 222 11 78 chr5 5448780 5448870 -197636662 - MIR SINE MIR 0 262 179 282 268 65 89 chr5 5448981 5449227 -197636305 - MLT1K LTR MaLR -160 428 189 1464 150 59 28 chr5 5449404 5449567 -197635965 - AluJb SINE Alu -17 295 118 183 42 0 0 chr5 5449567 5449591 -197635941 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1464 150 59 28 chr5 5449591 5449713 -197635819 - AluJb SINE Alu -194 118 1 324 0 0 0 chr5 5449761 5449797 -197635735 + (TG)n Simple_repeat Simple_repeat 2 37 0 2211 99 0 0 chr5 5449976 5450269 -197635263 - AluSg1 SINE Alu -16 293 1 352 115 0 2 chr5 5450220 5450277 -197635255 - Alu SINE Alu -254 49 1 * 744 218 175 26 chr5 5450277 5450580 -197634952 + L1MC4 LINE L1 7689 8037 -5 1988 124 24 13 chr5 5450965 5451263 -197634269 - AluSx SINE Alu -11 301 1 286 355 40 0 chr5 5451606 5451730 -197633802 + L1MEd LINE L1 509 637 -5482 288 0 0 0 chr5 5451786 5451818 -197633714 + (TG)n Simple_repeat Simple_repeat 1 32 0 320 181 64 0 chr5 5451937 5452031 -197633501 + Charlie2 DNA MER1_type 2675 2774 -88 352 305 48 0 chr5 5452162 5452267 -197633265 + L2 LINE L2 3202 3311 -2 260 215 107 50 chr5 5452631 5452752 -197632780 - L1MC4 LINE L1 -5 8037 7910 295 107 57 45 chr5 5452766 5452943 -197632589 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 39 38 0 0 chr5 5452954 5453007 -197632525 + AT_rich Low_complexity Low_complexity 1 53 0 379 93 105 0 chr5 5453007 5453169 -197632363 + (TA)n Simple_repeat Simple_repeat 1 179 0 441 99 34 70 chr5 5453220 5453575 -197631957 + (TA)n Simple_repeat Simple_repeat 1 341 0 204 129 53 53 chr5 5453684 5453855 -197631677 + (TA)n Simple_repeat Simple_repeat 2 172 0 302 236 101 75 chr5 5454018 5454068 -197631464 - L1MC/D LINE L1 -2294 5491 5444 1864 158 3 13 chr5 5454068 5454378 -197631154 - AluJo SINE Alu -4 308 2 302 236 101 75 chr5 5454378 5454402 -197631130 - L1MC/D LINE L1 -2341 5444 5422 571 120 56 9 chr5 5454402 5454510 -197631022 - L1MB3 LINE L1 -4 6179 6067 302 236 101 75 chr5 5454510 5454633 -197630899 - L1MC/D LINE L1 -2363 5422 5288 228 280 220 38 chr5 5455183 5455315 -197630217 + MIR SINE MIR 82 237 -25 2146 99 74 42 chr5 5455315 5455668 -197629864 - THE1B LTR MaLR 0 364 1 705 252 52 0 chr5 5455839 5455994 -197629538 + AluJo SINE Alu 13 175 -137 775 198 99 11 chr5 5456617 5456880 -197628652 - Charlie1b DNA MER1_type -129 394 109 929 178 6 12 chr5 5456891 5457054 -197628478 + FRAM SINE Alu 1 162 -14 2669 155 18 26 chr5 5458952 5459560 -197625972 + pTR5 LTR ERV1 742 1344 -1094 4176 124 15 126 chr5 5459576 5460500 -197625032 + LTR12 LTR ERV1 5 826 0 778 231 61 47 chr5 5462195 5462407 -197623125 - MIR SINE MIR 0 262 48 570 184 56 90 chr5 5463114 5463380 -197622152 - L1MC5 LINE L1 -94 7867 7611 2414 63 0 20 chr5 5463437 5463736 -197621796 - AluY SINE Alu -17 294 2 24 0 0 0 chr5 5463740 5463764 -197621768 + AT_rich Low_complexity Low_complexity 1 24 0 718 186 0 0 chr5 5463764 5463882 -197621650 - FLAM_C SINE Alu -25 118 1 297 0 0 0 chr5 5464132 5464165 -197621367 + (TG)n Simple_repeat Simple_repeat 2 34 0 2209 117 0 3 chr5 5464616 5464915 -197620617 + AluSx SINE Alu 1 298 -14 507 90 0 13 chr5 5465316 5465394 -197620138 - AluS SINE Alu -236 77 1 243 149 0 0 chr5 5465400 5465447 -197620085 - MER2 DNA MER2_type -169 176 130 771 167 92 17 chr5 5465449 5465623 -197619909 + Tigger2 DNA MER2_type 6 192 -2526 265 81 177 0 chr5 5465693 5465755 -197619777 - Tigger2 DNA MER2_type -169 2549 2477 3673 132 82 20 chr5 5465813 5466517 -197619015 - Tigger2 DNA MER2_type -1970 748 1 1091 169 43 0 chr5 5466517 5466724 -197618808 + MER2 DNA MER2_type 130 345 0 767 242 81 40 chr5 5466730 5467069 -197618463 + L2 LINE L2 2709 3080 -233 590 39 13 0 chr5 5467069 5467146 -197618386 + AluY SINE Alu 224 301 -11 1613 134 12 73 chr5 5467640 5467968 -197617564 - MLT1B LTR MaLR -82 308 1 2403 72 3 0 chr5 5468048 5468341 -197617191 - AluSp SINE Alu -19 294 1 750 172 127 31 chr5 5468684 5469128 -197616404 - Charlie1 DNA MER1_type -1 2760 2186 3374 203 89 10 chr5 5469136 5470395 -197615137 + L1MB8 LINE L1 4810 6174 -4 712 184 6 34 chr5 5470393 5470555 -197614977 + L1ME LINE L1 5421 5574 -547 * 325 234 165 19 chr5 5470718 5470797 -197614735 - LTR41 LTR ERVL -592 181 115 180 0 0 0 chr5 5470797 5470817 -197614715 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 325 234 165 19 chr5 5470817 5470895 -197614637 - LTR41 LTR ERVL -658 115 1 2348 99 3 0 chr5 5471079 5471382 -197614150 - AluSq SINE Alu -9 304 1 2198 76 32 0 chr5 5471573 5471871 -197613661 - AluSp SINE Alu 0 307 1 1729 146 84 0 chr5 5472227 5472502 -197613030 - AluSx SINE Alu -14 298 1 248 111 0 0 chr5 5472708 5472744 -197612788 + L1MC3 LINE L1 7238 7273 -512 450 95 0 0 chr5 5472748 5472811 -197612721 - LTR3b LTR ERVK 0 500 438 1828 172 49 51 chr5 5472811 5473241 -197612291 - LTR3 LTR ERVK 0 429 1 1975 158 113 15 chr5 5473241 5473271 -197612261 + L1MC3 LINE L1 7271 7297 -488 189 0 0 0 chr5 5473271 5473292 -197612240 + (ATATG)n Simple_repeat Simple_repeat 2 22 0 1975 158 113 15 chr5 5473292 5473723 -197611809 + L1MC3 LINE L1 7297 7777 -8 824 279 54 56 chr5 5474540 5474630 -197610902 - MLT1I LTR MaLR 0 409 320 1656 139 12 90 chr5 5474630 5474849 -197610683 + AluJo SINE Alu 1 189 -123 1863 135 30 20 chr5 5474849 5475152 -197610380 - AluSx SINE Alu -6 306 1 1656 139 12 90 chr5 5475152 5475255 -197610277 + AluJo SINE Alu 189 298 -14 824 279 54 56 chr5 5475255 5475572 -197609960 - MLT1I LTR MaLR -89 320 3 1867 200 63 41 chr5 5475775 5476315 -197609217 - L1ME1 LINE L1 -8 6158 5607 2277 79 0 33 chr5 5476655 5476958 -197608574 - AluSp SINE Alu -20 293 1 40 21 0 0 chr5 5477243 5477290 -197608242 + AT_rich Low_complexity Low_complexity 1 47 0 1930 140 0 0 chr5 5477966 5478244 -197607288 + AluSg SINE Alu 25 302 -8 1864 164 60 0 chr5 5478395 5478713 -197606819 - MER1B DNA MER1_type 0 337 1 282 377 31 13 chr5 5479493 5479652 -197605880 + MIR3 SINE MIR 42 203 -5 346 333 63 0 chr5 5480057 5480168 -197605364 + L2 LINE L2 3153 3270 -2 2002 126 29 0 chr5 5480262 5480594 -197604938 + AluSx SINE Alu 1 340 0 546 268 83 20 chr5 5483899 5484153 -197601379 + L1MC4 LINE L1 6792 7061 -981 272 255 54 82 chr5 5484623 5485011 -197600521 + L1MC5 LINE L1 7313 7689 -272 375 237 38 23 chr5 5485224 5485355 -197600177 - Charlie7 DNA MER1_type -3 2609 2477 292 310 139 12 chr5 5487451 5487756 -197597776 - L1MC4a LINE L1 -328 5793 5576 2495 183 33 9 chr5 5487803 5488345 -197597187 - MER90 LTR ERV1 -18 596 1 349 350 33 22 chr5 5488355 5488535 -197596997 - L1MC4a LINE L1 -458 7350 7169 1096 243 83 98 chr5 5488544 5489125 -197596407 + MLT1G LTR MaLR 16 587 -3 422 262 6 90 chr5 5489127 5489361 -197596171 - L1MC4 LINE L1 -735 7226 7040 1291 135 18 135 chr5 5489361 5489760 -197595772 - Tigger5 DNA MER2_type -1 2322 11 1927 149 0 7 chr5 5490492 5490793 -197594739 - AluJb SINE Alu -13 299 1 27 0 0 0 chr5 5491115 5491142 -197594390 + AT_rich Low_complexity Low_complexity 1 27 0 1398 171 114 7 chr5 5491144 5491424 -197594108 - AluJo SINE Alu -2 310 1 317 221 143 0 chr5 5491719 5491796 -197593736 + MER2 DNA MER2_type 1 88 -257 275 244 64 13 chr5 5492019 5492097 -197593435 + MER3 DNA MER1_type 1 82 -127 754 182 0 23 chr5 5492867 5492999 -197592533 - FLAM_C SINE Alu -14 129 1 646 180 0 0 chr5 5494226 5494326 -197591206 + FRAM SINE Alu 45 144 -32 917 200 15 15 chr5 5494794 5494999 -197590533 + MER3 DNA MER1_type 1 205 -4 2161 130 37 6 chr5 5494999 5495352 -197590180 + THE1B LTR MaLR 1 364 0 1715 171 10 10 chr5 5496019 5496311 -197589221 + AluJo SINE Alu 1 292 -20 209 311 134 34 chr5 5496566 5496685 -197588847 + L2 LINE L2 3182 3312 -1 * 225 229 115 21 chr5 5496683 5496779 -197588753 - MIR SINE MIR -68 194 90 309 254 83 55 chr5 5496927 5497108 -197588424 + MIR SINE MIR 71 256 -6 645 257 59 10 chr5 5498811 5499013 -197586519 + L2 LINE L2 1765 1976 -1338 1318 277 76 9 chr5 5499021 5499610 -197585922 + L2 LINE L2 2471 3109 -204 856 154 0 0 chr5 5499768 5499891 -197585641 + FLAM_C SINE Alu 1 123 -20 21 0 0 0 chr5 5499891 5499912 -197585620 + AT_rich Low_complexity Low_complexity 1 21 0 1924 173 0 0 chr5 5500050 5500350 -197585182 + AluJb SINE Alu 1 300 -12 2474 67 0 3 chr5 5501149 5501446 -197584086 + AluY SINE Alu 2 297 -14 940 95 0 3 chr5 5502766 5502988 -197582544 + AluSg SINE Alu 1 298 -12 2110 134 3 0 chr5 5503049 5503348 -197582184 + AluSx SINE Alu 1 300 -12 332 301 99 33 chr5 5503632 5503845 -197581687 + L1ME3 LINE L1 942 1168 -4951 308 315 116 8 chr5 5503979 5504246 -197581286 + HAL1 LINE L1 1463 1758 -749 649 239 155 73 chr5 5504486 5504976 -197580556 + L1ME3 LINE L1 4803 5332 -797 397 309 0 0 chr5 5505001 5505111 -197580421 - MER8 DNA MER2_type -127 112 3 2173 239 94 13 chr5 5505113 5505815 -197579717 + L1ME3 LINE L1 5352 6110 -35 23 33 0 0 chr5 5507162 5507192 -197578340 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr5 5507336 5507357 -197578175 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr5 5507630 5507651 -197577881 + AT_rich Low_complexity Low_complexity 1 21 0 2403 97 0 0 chr5 5507794 5508103 -197577429 - AluSx SINE Alu -3 309 1 1768 175 34 3 chr5 5508170 5508462 -197577070 - AluSx SINE Alu -11 301 1 1116 216 163 25 chr5 5508951 5509349 -197576183 - MLT1H LTR MaLR 0 549 97 2176 109 7 3 chr5 5509908 5510202 -197575330 - AluSx SINE Alu -17 295 1 1820 174 3 3 chr5 5511626 5511931 -197573601 - AluJo SINE Alu -7 305 1 270 0 0 0 chr5 5511935 5511965 -197573567 + (T)n Simple_repeat Simple_repeat 1 30 0 210 224 0 0 chr5 5512138 5512187 -197573345 + GA-rich Low_complexity Low_complexity 3 51 0 2357 54 7 0 chr5 5512460 5512755 -197572777 - AluY SINE Alu -14 297 1 1955 108 0 0 chr5 5513019 5513269 -197572263 + AluSx SINE Alu 49 298 -14 232 295 214 63 chr5 5513381 5513564 -197571968 - L2 LINE L2 -17 3296 3142 1646 165 7 65 chr5 5513564 5513873 -197571659 - AluJb SINE Alu -21 291 1 232 295 214 63 chr5 5513873 5514021 -197571511 - L2 LINE L2 -171 3142 2915 * 261 303 290 24 chr5 5514017 5514314 -197571218 + L2 LINE L2 2569 2944 -370 27 0 0 0 chr5 5514517 5514544 -197570988 + AT_rich Low_complexity Low_complexity 1 27 0 2481 67 0 0 chr5 5515298 5515597 -197569935 - AluY SINE Alu -12 299 1 23 54 0 0 chr5 5515760 5515797 -197569735 + AT_rich Low_complexity Low_complexity 1 37 0 470 261 154 0 chr5 5516122 5516310 -197569222 - MLT1L LTR MaLR -8 607 391 310 252 55 88 chr5 5516580 5516818 -197568714 - L2 LINE L2 0 3313 3084 316 311 151 50 chr5 5520868 5520954 -197564578 + L1MC/D LINE L1 5439 5515 -2293 1721 88 102 56 chr5 5520954 5521239 -197564293 + AluSg SINE Alu 3 300 -10 316 311 151 50 chr5 5521239 5521390 -197564142 + L1MC/D LINE L1 5515 5700 -2108 484 275 178 51 chr5 5521652 5522264 -197563268 - L2 LINE L2 -2 3311 2625 1370 205 115 18 chr5 5522289 5522742 -197562790 - L1M4 LINE L1 -848 5298 4802 26 64 0 0 chr5 5525364 5525411 -197560121 + AT_rich Low_complexity Low_complexity 1 47 0 216 0 0 0 chr5 5525818 5525842 -197559690 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2176 110 0 25 chr5 5525867 5526185 -197559347 + AluSx SINE Alu 1 310 -2 315 0 0 0 chr5 5526185 5526220 -197559312 + (TA)n Simple_repeat Simple_repeat 2 36 0 24 32 0 0 chr5 5527455 5527486 -197558046 + AT_rich Low_complexity Low_complexity 1 31 0 2089 110 45 0 chr5 5528652 5528942 -197556590 + AluSx SINE Alu 1 303 -9 342 91 0 0 chr5 5530170 5530225 -197555307 + (CA)n Simple_repeat Simple_repeat 1 55 0 2424 88 0 25 chr5 5531240 5531557 -197553975 + AluSc SINE Alu 1 309 0 470 273 123 0 chr5 5531557 5531738 -197553794 + L2 LINE L2 2364 2567 -747 351 299 76 28 chr5 5532030 5532143 -197553389 + MIR3 SINE MIR 25 148 -60 2123 115 0 20 chr5 5532143 5532448 -197553084 + AluSx SINE Alu 1 299 -13 351 299 76 28 chr5 5532448 5532478 -197553054 + MIR3 SINE MIR 148 175 -33 266 358 75 11 chr5 5532737 5532924 -197552608 + MIR SINE MIR 24 222 -40 2262 108 0 13 chr5 5533203 5533518 -197552014 + AluSx SINE Alu 2 312 0 1295 194 24 8 chr5 5533766 5534018 -197551514 - AluJo SINE Alu -18 294 39 208 375 79 29 chr5 5534471 5534887 -197550645 - L2 LINE L2 -558 2756 2320 11366 107 31 42 chr5 5637191 5637504 -197448028 + Tigger1 DNA MER2_type 658 973 -1445 2295 92 24 0 chr5 5637504 5637799 -197447733 - AluSg SINE Alu -8 302 1 11366 107 31 42 chr5 5637799 5639265 -197446267 + Tigger1 DNA MER2_type 973 2418 0 955 189 124 57 chr5 5639632 5639980 -197445552 + MLT1D LTR MaLR 1 442 -63 2333 94 3 3 chr5 5639980 5640288 -197445244 - AluSp SINE Alu -5 308 1 955 189 124 57 chr5 5640288 5640355 -197445177 + MLT1D LTR MaLR 442 503 -2 586 244 142 20 chr5 5640364 5640561 -197444971 - MIR SINE MIR -39 223 3 2487 58 0 26 chr5 5640744 5641057 -197444475 - AluY SINE Alu -6 305 1 28 0 0 0 chr5 5642690 5642718 -197442814 + AT_rich Low_complexity Low_complexity 1 28 0 1049 209 39 9 chr5 5642725 5642955 -197442577 - L1MB3 LINE L1 -7 6176 5940 2373 92 0 0 chr5 5642957 5643251 -197442281 + AluSg SINE Alu 1 294 -16 2379 105 52 47 chr5 5643251 5643613 -197441919 - THE1B LTR MaLR 0 364 1 2124 136 0 0 chr5 5646660 5646955 -197438577 - AluSx SINE Alu -17 295 1 181 346 72 27 chr5 5648095 5648358 -197437174 + L2 LINE L2 2688 2962 -352 228 215 93 37 chr5 5648572 5648679 -197436853 + L2 LINE L2 3201 3313 0 1805 166 3 7 chr5 5648778 5649080 -197436452 - AluJo SINE Alu -11 301 1 230 158 0 0 chr5 5649844 5649882 -197435650 - tRNA-Leu-TTG tRNA tRNA -46 40 3 2932 257 98 22 chr5 5650958 5652069 -197433463 + L1MC4 LINE L1 6771 7966 -76 1117 180 234 0 chr5 5652071 5652310 -197433222 + AluJb SINE Alu 1 295 -17 456 154 13 0 chr5 5652316 5652394 -197433138 + L1MC4 LINE L1 7960 8038 -4 442 196 112 28 chr5 5652713 5652856 -197432676 - MER104 DNA Tc2 0 180 26 920 96 0 8 chr5 5652856 5652981 -197432551 + FLAM_C SINE Alu 1 124 -19 202 225 0 0 chr5 5654099 5654139 -197431393 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 186 345 44 35 chr5 5654139 5654252 -197431280 + MIR SINE MIR 41 154 -108 453 253 153 0 chr5 5654713 5654883 -197430649 - L2 LINE L2 0 3313 3118 1869 128 176 10 chr5 5655233 5655545 -197429987 + THE1B LTR MaLR 1 364 0 12043 77 12 3 chr5 5655545 5657097 -197428435 + THE1B-int LTR MaLR 15 1580 0 2410 92 63 20 chr5 5657097 5657446 -197428086 + THE1B LTR MaLR 1 364 0 354 312 88 12 chr5 5657679 5657849 -197427683 + L3 LINE CR1 626 808 -769 1136 252 74 24 chr5 5658741 5659162 -197426370 + MLT1L LTR MaLR 166 607 -8 249 299 13 0 chr5 5660056 5660133 -197425399 + L3 LINE CR1 1147 1224 -353 626 255 66 14 chr5 5660413 5660625 -197424907 + L3 LINE CR1 1283 1505 -72 221 167 50 0 chr5 5662417 5662477 -197423055 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 2280 110 0 7 chr5 5662478 5662788 -197422744 - AluSx SINE Alu -4 308 1 721 138 0 18 chr5 5662791 5662900 -197422632 - MLT1B LTR MaLR -282 108 2 2392 99 0 0 chr5 5663797 5664109 -197421423 + AluSx SINE Alu 1 312 0 22 0 0 0 chr5 5664205 5664227 -197421305 + AT_rich Low_complexity Low_complexity 1 22 0 807 335 109 65 chr5 5665032 5665163 -197420369 - L3 LINE CR1 -76 1501 1377 1787 136 24 21 chr5 5665163 5665450 -197420082 - AluJb SINE Alu -3 309 22 807 335 109 65 chr5 5665450 5666226 -197419306 - L3 LINE CR1 -200 1377 544 1538 147 45 54 chr5 5666226 5666539 -197418993 - AluJb SINE Alu 0 312 3 807 335 109 65 chr5 5666539 5666616 -197418916 - L3 LINE CR1 -1033 544 472 2022 143 0 0 chr5 5667036 5667330 -197418202 - AluSx SINE Alu -18 294 1 2105 214 85 105 chr5 5668224 5668438 -197417094 - L1ME1 LINE L1 -8 6158 5941 480 101 0 0 chr5 5668438 5668507 -197417025 - Alu SINE Alu -1 309 241 2105 214 85 105 chr5 5668507 5669035 -197416497 - L1ME1 LINE L1 -225 5941 5364 2084 138 38 30 chr5 5669035 5669404 -197416128 - THE1C LTR MaLR 0 375 4 1217 213 20 16 chr5 5669452 5669783 -197415749 - L1MC/D LINE L1 -746 5400 5242 2170 102 0 39 chr5 5669783 5670088 -197415444 - AluSx SINE Alu -19 293 1 1217 213 20 16 chr5 5670088 5670134 -197415398 - L1MC/D LINE L1 -904 5242 5198 770 153 0 96 chr5 5670136 5670293 -197415239 - FLAM_C SINE Alu 0 143 2 5331 221 37 50 chr5 5670294 5671239 -197414293 - L1MC/D LINE L1 -937 5209 4296 1483 131 5 5 chr5 5671239 5671453 -197414079 - AluSg/x SINE Alu -13 299 86 5331 221 37 50 chr5 5671453 5672221 -197413311 - L1MC/D LINE L1 -1850 4296 3519 278 248 9 0 chr5 5672383 5672492 -197413040 + GA-rich Low_complexity Low_complexity 1 110 0 891 313 50 37 chr5 5672544 5673200 -197412332 + HAL1b LINE L1 145 809 -539 2140 83 79 0 chr5 5673622 5673912 -197411620 - AluSp SINE Alu 0 313 1 1300 208 21 4 chr5 5674980 5675251 -197410281 + AluJo SINE Alu 39 313 0 1099 217 156 44 chr5 5675555 5675793 -197409739 - L1 LINE L1 -1593 4553 4343 1582 194 14 17 chr5 5675793 5676087 -197409445 - AluJb SINE Alu -14 298 6 1099 217 156 44 chr5 5676087 5676258 -197409274 - L1 LINE L1 -1803 4343 4098 1605 230 25 42 chr5 5676262 5676736 -197408796 - L1 LINE L1 -2155 3991 3526 206 279 0 0 chr5 5677013 5677056 -197408476 - L2 LINE L2 -3 3310 3268 21 0 0 0 chr5 5677409 5677430 -197408102 + AT_rich Low_complexity Low_complexity 1 21 0 234 301 154 0 chr5 5678964 5679087 -197406445 - MIR3 SINE MIR -25 183 42 1052 233 165 16 chr5 5679255 5679869 -197405663 + LTR50 LTR ERVL 1 793 -2 1656 149 76 41 chr5 5681344 5681685 -197403847 - THE1C LTR MaLR -33 342 1 1768 120 19 0 chr5 5681757 5682016 -197403516 - AluSg1 SINE Alu -5 304 41 804 262 151 70 chr5 5682326 5682696 -197402836 + MLT1I LTR MaLR 2 401 -8 2123 126 7 0 chr5 5683047 5683349 -197402183 - AluSx SINE Alu -2 310 7 2301 198 35 71 chr5 5683564 5684139 -197401393 - MLT2B3 LTR ERVL 0 554 1 1728 159 77 30 chr5 5684736 5685100 -197400432 + MLT1B LTR MaLR 8 388 -2 1360 263 43 17 chr5 5685288 5685638 -197399894 + MLT1I LTR MaLR 48 406 -3 360 0 0 0 chr5 5686368 5686408 -197399124 + (TG)n Simple_repeat Simple_repeat 1 40 0 1795 169 36 109 chr5 5686915 5687327 -197398205 - MLT1C LTR MaLR 0 467 96 1985 121 33 16 chr5 5687327 5687633 -197397899 - AluSx SINE Alu 0 312 2 1795 169 36 109 chr5 5687633 5687717 -197397815 - MLT1C LTR MaLR -371 96 7 241 203 0 87 chr5 5687994 5688063 -197397469 - MLT1K LTR MaLR -34 554 492 23 54 0 0 chr5 5688252 5688289 -197397243 + AT_rich Low_complexity Low_complexity 1 37 0 443 328 63 25 chr5 5689218 5689427 -197396105 - L1MC4a LINE L1 -1882 5926 5702 2030 116 34 3 chr5 5689427 5689719 -197395813 - AluSx SINE Alu -11 301 1 443 328 63 25 chr5 5689719 5689793 -197395739 - L1MC4a LINE L1 -2106 5702 5632 1217 75 6 13 chr5 5689962 5690121 -197395411 - AluY SINE Alu -153 158 1 21 0 0 56 chr5 5690620 5690638 -197394894 + AT_rich Low_complexity Low_complexity 1 18 -16 1486 41 0 0 chr5 5690638 5690809 -197394723 - AluY SINE Alu -18 293 123 21 0 0 56 chr5 5690809 5690826 -197394706 + AT_rich Low_complexity Low_complexity 18 34 0 1494 178 69 7 chr5 5691219 5691495 -197394037 - AluJo SINE Alu -19 293 1 417 310 158 10 chr5 5691855 5692058 -197393474 - MIR SINE MIR -1 261 29 1897 136 51 0 chr5 5692066 5692361 -197393171 - AluSg SINE Alu 0 310 1 845 194 58 51 chr5 5692383 5692829 -197392703 + MER39 LTR ERV1 1 550 -157 2636 119 8 99 chr5 5692829 5693326 -197392206 - LTR12 LTR ERV1 -236 478 27 707 185 57 13 chr5 5693351 5693519 -197392013 + MER39 LTR ERV1 364 707 0 5769 136 23 24 chr5 5693909 5695054 -197390478 - L1PA16 LINE L1 -9 6157 5013 1975 166 0 0 chr5 5695054 5695355 -197390177 - AluJb SINE Alu -11 301 1 5769 136 23 24 chr5 5695355 5695371 -197390161 - L1PA16 LINE L1 -1153 5013 4998 2051 127 3 0 chr5 5695371 5695680 -197389852 - AluSx SINE Alu 0 310 1 5769 136 23 24 chr5 5695680 5695808 -197389724 - L1PA16 LINE L1 -1168 4998 4873 1703 120 12 0 chr5 5695906 5696148 -197389384 + AluSq SINE Alu 10 254 -59 2480 78 10 0 chr5 5696248 5696555 -197388977 + AluSq SINE Alu 4 313 0 394 306 91 30 chr5 5696756 5697021 -197388511 - L1MDa LINE L1 -3925 2615 2335 22677 82 13 4 chr5 5697035 5700979 -197384553 - L1PA7 LINE L1 -6 6148 2170 385 178 68 0 chr5 5702080 5702153 -197383379 - MIR SINE MIR -106 156 79 30 45 0 0 chr5 5702882 5702926 -197382606 + AT_rich Low_complexity Low_complexity 1 44 0 981 184 6 0 chr5 5703611 5703774 -197381758 + MLT1A1 LTR MaLR 202 365 0 754 195 83 6 chr5 5705069 5705238 -197380294 - LTR40a LTR ERVL -314 205 24 252 276 233 0 chr5 5705258 5705374 -197380158 + HAL1 LINE L1 1504 1646 -861 1961 114 60 4 chr5 5705416 5705697 -197379835 + AluSx SINE Alu 1 297 -15 866 290 136 45 chr5 5707133 5707867 -197377665 + HAL1 LINE L1 4 804 -1703 2388 86 0 0 chr5 5708136 5708427 -197377105 + AluSg SINE Alu 2 292 -18 1161 122 87 0 chr5 5708547 5708743 -197376789 + L1MA1 LINE L1 6090 6302 0 317 254 66 8 chr5 5708911 5709033 -197376499 + HAL1 LINE L1 2030 2158 -349 611 200 38 79 chr5 5709138 5709378 -197376154 + HAL1 LINE L1 2191 2420 -87 8600 120 17 71 chr5 5709595 5711933 -197373599 + L1P3 LINE L1 12 2097 -4049 1446 180 170 41 chr5 5712835 5713247 -197372285 + MLT1C LTR MaLR 1 465 -2 2061 134 33 25 chr5 5713254 5713613 -197371919 - MLT1A1 LTR MaLR 0 365 4 216 206 14 68 chr5 5715352 5715425 -197370107 - L2 LINE L2 -2 3311 3243 564 289 97 30 chr5 5715444 5715742 -197369790 - MLT1J1 LTR MaLR -4 442 125 294 253 51 0 chr5 5716150 5716229 -197369303 - MIR SINE MIR -75 187 105 3607 65 0 7 chr5 5716248 5716712 -197368820 + L1PA13 LINE L1 5703 6163 0 1535 205 10 7 chr5 5716722 5717015 -197368517 + AluJb SINE Alu 4 297 -15 1031 184 0 17 chr5 5717187 5717366 -197368166 - AluJo SINE Alu -132 180 5 2416 93 0 0 chr5 5717382 5717682 -197367850 - AluSc SINE Alu -7 302 3 238 230 92 11 chr5 5717699 5717786 -197367746 - MLT1J1 LTR MaLR -8 438 345 229 220 20 0 chr5 5719902 5719952 -197365580 + L2 LINE L2 3222 3272 0 4275 122 9 8 chr5 5720113 5720747 -197364785 - MER41B LTR ERV1 0 635 1 1717 71 4 0 chr5 5721245 5721471 -197364061 - L1PA8 LINE L1 -2 6170 5944 458 274 87 46 chr5 5721666 5722220 -197363312 + MER20B DNA MER1_type 16 702 -81 1915 196 48 5 chr5 5722224 5722602 -197362930 + MSTD LTR MaLR 1 394 -2 6908 228 47 38 chr5 5722606 5724325 -197361207 + MSTD-int LTR MaLR 2 1735 0 670 111 46 9 chr5 5724325 5724433 -197361099 + MSTD LTR MaLR 1 112 -284 340 167 97 0 chr5 5724430 5724502 -197361030 + MSTD LTR MaLR 314 392 -4 * 3736 156 21 25 chr5 5724539 5725219 -197360313 - L1MB2 LINE L1 -43 6128 5452 450 146 29 19 chr5 5725224 5725327 -197360205 + MER20B DNA MER1_type 680 783 0 25 31 0 0 chr5 5726924 5726956 -197358576 + AT_rich Low_complexity Low_complexity 1 32 0 390 221 21 0 chr5 5727147 5727242 -197358290 - MIR SINE MIR -109 153 57 2316 86 0 32 chr5 5727325 5727638 -197357894 - AluSc SINE Alu -3 306 4 251 338 53 7 chr5 5727862 5728013 -197357519 + MIR SINE MIR 94 251 -11 1430 176 17 76 chr5 5728371 5728695 -197356837 + AluJo SINE Alu 2 307 0 23 33 0 0 chr5 5729176 5729206 -197356326 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr5 5729441 5729462 -197356070 + AT_rich Low_complexity Low_complexity 1 21 0 1726 168 20 23 chr5 5729462 5729766 -197355766 - AluJb SINE Alu -9 303 1 1262 102 0 5 chr5 5732813 5732999 -197352533 + L1PA13 LINE L1 5979 6163 0 26 50 0 0 chr5 5733226 5733266 -197352266 + AT_rich Low_complexity Low_complexity 1 40 0 1629 157 42 17 chr5 5733268 5733555 -197351977 + AluJo SINE Alu 1 294 -18 609 172 25 0 chr5 5733581 5733703 -197351829 + L1MC1 LINE L1 6208 6332 -1 513 158 53 75 chr5 5734580 5734713 -197350819 + MER91B DNA MER1_type 1 130 -60 196 125 75 0 chr5 5734914 5734954 -197350578 - L2 LINE L2 -2 3270 3228 451 225 230 16 chr5 5735058 5735249 -197350283 + MLT1J2 LTR MaLR 75 306 -144 430 323 65 40 chr5 5735421 5735622 -197349910 + MIR SINE MIR 47 252 -10 326 313 148 28 chr5 5735663 5735839 -197349693 + MIR SINE MIR 49 245 -17 1555 171 123 50 chr5 5735882 5736187 -197349345 - MSTC LTR MaLR -1 427 85 692 46 0 0 chr5 5736187 5736274 -197349258 - L1PA4 LINE L1 -3 6152 6066 1555 171 123 50 chr5 5736274 5736366 -197349166 - MSTC LTR MaLR -343 85 1 1331 218 85 37 chr5 5736366 5736773 -197348759 + MLT1C LTR MaLR 30 464 -3 239 138 0 138 chr5 5736959 5737017 -197348515 - MER58 DNA MER1_type -84 257 208 559 226 44 0 chr5 5737088 5737225 -197348307 + MER5C DNA MER1_type 17 159 -165 1345 113 28 0 chr5 5737248 5737461 -197348071 - L1MA4 LINE L1 -18 6282 6064 256 23 0 47 chr5 5737508 5737551 -197347981 + (TA)n Simple_repeat Simple_repeat 2 42 0 183 269 106 67 chr5 5738208 5738312 -197347220 - MIR3 SINE MIR -10 198 91 438 243 99 7 chr5 5738964 5739017 -197346515 + MER5B DNA MER1_type 6 53 -125 627 171 97 17 chr5 5739017 5739192 -197346340 + MER5A DNA MER1_type 1 189 0 438 243 99 7 chr5 5739192 5739290 -197346242 + MER5B DNA MER1_type 53 171 -7 37 0 0 0 chr5 5739553 5739590 -197345942 + AT_rich Low_complexity Low_complexity 1 37 0 1639 104 36 0 chr5 5739590 5739810 -197345722 - AluSx SINE Alu -84 228 1 4576 109 14 33 chr5 5740000 5740167 -197345365 - LTR8 LTR ERV1 0 691 522 2377 82 3 10 chr5 5740167 5740473 -197345059 - AluSp SINE Alu -9 304 1 4576 109 14 33 chr5 5740473 5741009 -197344523 - LTR8 LTR ERV1 -169 522 1 594 183 26 9 chr5 5741010 5741125 -197344407 - LTR8A LTR ERV1 -610 117 1 2274 105 0 3 chr5 5741322 5741635 -197343897 + AluSx SINE Alu 1 312 0 223 172 266 0 chr5 5742183 5742247 -197343285 + L2 LINE L2 3231 3311 -2 186 253 22 88 chr5 5742748 5742839 -197342693 - MER5B DNA MER1_type -69 109 25 593 236 21 64 chr5 5743134 5743367 -197342165 + L1MC5 LINE L1 7061 7283 -678 485 188 75 30 chr5 5743462 5743595 -197341937 + L1MC5 LINE L1 7299 7437 -524 362 288 196 7 chr5 5743604 5743757 -197341775 + MER5A DNA MER1_type 8 189 0 379 230 152 22 chr5 5743775 5744145 -197341387 + L1MC5 LINE L1 7452 7901 -60 259 101 13 51 chr5 5744424 5744503 -197341029 + (TA)n Simple_repeat Simple_repeat 2 77 0 2796 86 23 13 chr5 5744503 5744900 -197340632 - MLT2A1 LTR ERVL -43 401 1 2778 125 34 26 chr5 5744900 5745012 -197340520 - L1MA4A LINE L1 -255 6048 5562 1904 163 35 35 chr5 5745012 5745387 -197340145 - THE1C LTR MaLR 0 375 1 1967 189 15 94 chr5 5745387 5746257 -197339275 - L1PA2 LINE L1 -226 5929 5186 393 205 158 0 chr5 5746257 5746384 -197339148 + MER5C DNA MER1_type 174 320 -4 212 200 0 0 chr5 5746913 5746953 -197338579 + L2 LINE L2 3264 3303 -10 1412 202 82 12 chr5 5747292 5747633 -197337899 - MLT1A1 LTR MaLR 0 365 1 548 29 14 0 chr5 5747745 5747815 -197337717 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 744 141 0 16 chr5 5747815 5747936 -197337596 - FLAM_C SINE Alu -23 120 2 2594 51 0 10 chr5 5749279 5749592 -197335940 - AluY SINE Alu -1 310 1 235 302 52 17 chr5 5750199 5750371 -197335161 + L1MC4a LINE L1 2305 2482 -3664 1532 234 122 22 chr5 5750433 5750885 -197334647 + MLT1D LTR MaLR 1 497 -8 1367 320 52 24 chr5 5750975 5752253 -197333279 + L1MC4a LINE L1 2676 3988 -2158 21 36 0 0 chr5 5752265 5752293 -197333239 + AT_rich Low_complexity Low_complexity 1 28 0 323 289 54 43 chr5 5752451 5752728 -197332804 + L1MC4a LINE L1 4161 4440 -1706 2522 62 0 28 chr5 5752802 5753122 -197332410 - AluY SINE Alu 0 311 1 536 260 75 78 chr5 5753128 5753513 -197332019 + MLT1J LTR MaLR 36 419 -92 5256 156 14 6 chr5 5753650 5754547 -197330985 + L1MC1 LINE L1 5429 6333 0 395 322 26 26 chr5 5754565 5754795 -197330737 + L1MC4a LINE L1 4456 4685 -1461 2920 123 9 60 chr5 5755392 5755927 -197329605 - L1PB1 LINE L1 -10 6141 5634 2172 101 6 19 chr5 5755952 5756268 -197329264 - AluSp SINE Alu -1 312 1 280 224 0 0 chr5 5756269 5756327 -197329205 + LTR16B LTR ERVL 407 464 0 243 254 99 28 chr5 5756331 5756473 -197329059 + L1MC4a LINE L1 4903 5054 -1092 1163 219 120 69 chr5 5756506 5756972 -197328560 - MLT1D LTR MaLR -4 501 12 598 258 45 25 chr5 5756994 5757358 -197328174 + L1MC4a LINE L1 5107 5481 -743 2366 99 0 6 chr5 5757434 5757746 -197327786 + AluSg SINE Alu 1 310 0 293 319 89 27 chr5 5757760 5758017 -197327515 + L1MC4a LINE L1 5658 5930 -1878 1850 155 58 0 chr5 5758102 5758393 -197327139 - AluJb SINE Alu -4 308 1 3379 51 10 0 chr5 5758403 5758818 -197326714 - L1PA5 LINE L1 -2 6152 5734 668 110 66 37 chr5 5758949 5759085 -197326447 - L1MA4A LINE L1 0 6303 6164 1496 216 35 37 chr5 5759535 5759910 -197325622 - MLT1A2 LTR MaLR 0 374 1 1154 237 106 32 chr5 5761175 5761610 -197323922 + MLT1C LTR MaLR 1 467 0 693 175 9 0 chr5 5761806 5761920 -197323612 - FLAM_C SINE Alu -17 116 2 395 191 0 0 chr5 5761922 5761990 -197323542 - AluJ/FLAM SINE Alu -233 69 2 410 159 0 0 chr5 5761992 5762061 -197323471 - AluJ/FLAM SINE Alu -243 69 1 195 280 262 0 chr5 5762065 5762172 -197323360 + L2 LINE L2 2926 3060 -253 1932 181 38 53 chr5 5762374 5762671 -197322861 - MLT1C LTR MaLR 0 467 178 2225 100 3 0 chr5 5762671 5762962 -197322570 - AluSx SINE Alu -20 292 1 1932 181 38 53 chr5 5762962 5763133 -197322399 - MLT1C LTR MaLR -289 178 6 2216 113 0 10 chr5 5764725 5765034 -197320498 - AluSx SINE Alu -6 306 1 1697 204 264 13 chr5 5765118 5765819 -197319713 - Charlie7 DNA MER1_type -231 2381 1505 2132 113 40 64 chr5 5765840 5766049 -197319483 - THE1B LTR MaLR 0 364 166 2120 99 3 35 chr5 5766049 5766362 -197319170 + AluSq SINE Alu 1 303 -10 2132 113 40 64 chr5 5766362 5766525 -197319007 - THE1B LTR MaLR -198 166 1 192 209 110 0 chr5 5766754 5766845 -197318687 + MIR SINE MIR 82 146 -62 2360 157 49 2 chr5 5767948 5768357 -197317175 - MSTA LTR MaLR 0 428 1 1570 256 132 25 chr5 5768486 5769010 -197316522 + MLT1G1 LTR MaLR 4 583 -12 2177 94 4 0 chr5 5769018 5769294 -197316238 + AluSp SINE Alu 1 277 -36 222 37 0 0 chr5 5769300 5769327 -197316205 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1067 257 107 17 chr5 5770097 5770443 -197315089 + MLT1E2 LTR MaLR 1 377 -249 194 354 0 23 chr5 5770461 5770591 -197314941 + MIR SINE MIR 86 212 -50 208 206 0 0 chr5 5771215 5771249 -197314283 + polypyrimidine Low_complexity Low_complexity 3 36 0 504 329 36 32 chr5 5771270 5771519 -197314013 - HAL1 LINE L1 -9 2498 2249 181 81 27 27 chr5 5771651 5771688 -197313844 + (TC)n Simple_repeat Simple_repeat 2 38 0 359 280 19 9 chr5 5772056 5772163 -197313369 - HAL1 LINE L1 -741 1766 1659 355 130 29 14 chr5 5772172 5772241 -197313291 - MLT1E2 LTR MaLR 0 624 555 1546 113 38 25 chr5 5772266 5772506 -197313026 - L1PB4 LINE L1 -2 6154 5912 455 257 11 73 chr5 5772535 5772714 -197312818 - MLT1E2 LTR MaLR -226 400 233 386 205 77 51 chr5 5772754 5772871 -197312661 - MLT1E2 LTR MaLR -506 120 1 1815 149 0 58 chr5 5772877 5773186 -197312346 - AluSx SINE Alu -21 291 1 279 305 90 6 chr5 5773405 5773572 -197311960 - LTR16C LTR ERVL -32 459 279 470 267 107 40 chr5 5774114 5774328 -197311204 - LTR33 LTR ERVL -306 215 1 331 280 106 21 chr5 5774618 5774807 -197310725 - HERVL LTR ERVL -452 5312 5108 1819 158 59 24 chr5 5774960 5775301 -197310231 + MLT1A1 LTR MaLR 1 353 -12 282 375 15 0 chr5 5775551 5775687 -197309845 - HERVL LTR ERVL -2627 3027 2890 2128 269 60 49 chr5 5775780 5776699 -197308833 + L1MC4 LINE L1 7113 8041 -1 1372 196 28 89 chr5 5777061 5777454 -197308078 - MLT1B LTR MaLR -2 388 20 1162 211 61 94 chr5 5778949 5779427 -197306105 + MLT1C LTR MaLR 6 467 0 3004 191 50 5 chr5 5780763 5781214 -197304318 - L1MB5 LINE L1 -21 6153 5667 273 119 0 0 chr5 5781214 5781256 -197304276 + (TA)n Simple_repeat Simple_repeat 2 43 0 3004 191 50 5 chr5 5781256 5781405 -197304127 - L1MB5 LINE L1 -507 5667 5526 247 286 0 0 chr5 5782691 5782761 -197302771 + L2 LINE L2 3203 3272 0 189 269 0 19 chr5 5782942 5782994 -197302538 + MIR3 SINE MIR 8 58 -150 432 100 43 164 chr5 5783562 5783629 -197301903 + HAL1 LINE L1 1530 1573 -934 2343 95 0 7 chr5 5783629 5783934 -197301598 + AluSg SINE Alu 1 303 -7 432 100 43 164 chr5 5783934 5784006 -197301526 + HAL1 LINE L1 1573 1652 -855 358 311 33 7 chr5 5784455 5784606 -197300926 - L1M4 LINE L1 -2964 3182 3028 2406 122 55 18 chr5 5784896 5785330 -197300202 - LTR7 LTR ERV1 0 450 1 195 146 0 0 chr5 5785403 5785444 -197300088 + (TATG)n Simple_repeat Simple_repeat 2 42 0 1495 322 0 63 chr5 5786072 5786403 -197299129 + AluSx SINE Alu 1 312 0 1559 173 8 4 chr5 5786405 5786660 -197298872 + AluJb SINE Alu 35 290 -22 541 269 102 19 chr5 5786876 5787199 -197298333 - HAL1b LINE L1 -478 870 521 2403 92 0 0 chr5 5787320 5787624 -197297908 + AluY SINE Alu 1 304 -7 311 290 51 54 chr5 5787648 5787924 -197297608 - HAL1b LINE L1 -1036 312 38 180 0 0 0 chr5 5788905 5788925 -197296607 + (TA)n Simple_repeat Simple_repeat 2 21 0 306 298 102 15 chr5 5789438 5789643 -197295889 - L1M4 LINE L1 -2236 3910 3688 373 278 81 45 chr5 5789867 5790090 -197295442 + MIR SINE MIR 29 259 -3 19556 89 14 1 chr5 5790124 5793623 -197291909 - L1PA7 LINE L1 -5 6464 2921 4495 114 48 0 chr5 5793631 5794278 -197291254 - L1PA7 LINE L1 -5774 687 10 677 295 82 63 chr5 5794320 5794808 -197290724 - L1M4 LINE L1 -2685 3461 2954 824 224 50 36 chr5 5794808 5795027 -197290505 + MER58A DNA MER1_type 2 223 -1 677 295 82 63 chr5 5795027 5795247 -197290285 - L1M4 LINE L1 -3192 2954 2740 830 254 89 44 chr5 5795558 5795896 -197289636 + MLT1H LTR MaLR 190 542 -7 897 256 107 8 chr5 5796082 5796344 -197289188 + MLT1G1 LTR MaLR 1 288 -307 550 329 57 57 chr5 5796356 5796778 -197288754 + L2 LINE L2 2892 3313 0 415 256 64 60 chr5 5796866 5797100 -197288432 - HAL1b LINE L1 -778 570 336 1692 201 13 87 chr5 5797140 5797612 -197287920 - MLT1D LTR MaLR -8 497 61 366 250 62 8 chr5 5798119 5798188 -197287344 - HAL1 LINE L1 -84 2423 2359 3196 188 18 38 chr5 5798188 5798463 -197287069 + MLT1E1 LTR MaLR 3 282 -372 2275 117 0 0 chr5 5798463 5798761 -197286771 + AluSx SINE Alu 6 303 -9 3196 188 18 38 chr5 5798761 5799150 -197286382 + MLT1E1 LTR MaLR 282 654 0 366 250 62 8 chr5 5799150 5799208 -197286324 - HAL1 LINE L1 -148 2359 2289 604 296 139 18 chr5 5799792 5800066 -197285466 - MLT1I LTR MaLR -28 381 75 325 349 95 11 chr5 5800192 5800456 -197285076 + L1MC/D LINE L1 5295 5580 -2228 297 258 43 0 chr5 5800616 5800709 -197284823 + L2 LINE L2 3169 3265 -7 317 158 11 32 chr5 5801476 5801571 -197283961 + (TA)n Simple_repeat Simple_repeat 1 93 0 208 189 38 38 chr5 5801578 5801631 -197283901 + MER5A DNA MER1_type 137 189 0 247 258 0 21 chr5 5803085 5803178 -197282354 - L1MC4 LINE L1 -1338 6704 6614 687 233 223 40 chr5 5803323 5803696 -197281836 - MLT1H LTR MaLR -107 442 2 291 293 40 0 chr5 5803696 5803795 -197281737 - MIR SINE MIR -63 145 43 2327 147 24 31 chr5 5805630 5806045 -197279487 + MLT2D LTR ERVL 3 414 0 486 286 49 35 chr5 5806054 5806257 -197279275 - MIR SINE MIR -41 221 16 245 252 86 28 chr5 5807089 5807226 -197278306 + LTR33A LTR ERVL 403 520 -3 446 156 0 92 chr5 5807512 5807621 -197277911 - L1PA11 LINE L1 0 6174 6076 2319 16 0 0 chr5 5807626 5807881 -197277651 + L1P1 LINE L1 5469 5723 -432 2032 119 9 35 chr5 5808244 5808563 -197276969 - AluJo SINE Alu -1 311 1 269 300 46 31 chr5 5808567 5808697 -197276835 - MIR SINE MIR -60 148 17 31 0 0 0 chr5 5808933 5808964 -197276568 + AT_rich Low_complexity Low_complexity 1 31 0 670 240 91 13 chr5 5809710 5809864 -197275668 + MER20 DNA MER1_type 53 218 -1 297 333 57 12 chr5 5811053 5811299 -197274233 - L2 LINE L2 -1244 2070 1814 240 35 0 0 chr5 5812297 5812326 -197273206 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 317 239 188 0 chr5 5813356 5813473 -197272059 + MLT1J2 LTR MaLR 67 205 -245 1843 187 52 9 chr5 5815066 5815414 -197270118 + MLT1A1 LTR MaLR 1 363 -2 404 289 36 36 chr5 5815777 5815943 -197269589 - MIR SINE MIR -32 230 65 647 258 45 10 chr5 5816430 5816628 -197268904 + MIR SINE MIR 1 205 -57 2902 138 39 55 chr5 5818065 5818124 -197267408 + L1MA9 LINE L1 5726 5784 -528 2125 123 0 0 chr5 5818124 5818417 -197267115 + AluSx SINE Alu 1 293 -19 2902 138 39 55 chr5 5818417 5818797 -197266735 + L1MA9 LINE L1 5784 6155 -157 180 97 0 0 chr5 5818797 5818828 -197266704 + (CA)n Simple_repeat Simple_repeat 1 31 0 2902 138 39 55 chr5 5818828 5818983 -197266549 + L1MA9 LINE L1 6155 6311 -1 2453 47 14 10 chr5 5819429 5819725 -197265807 - AluY SINE Alu -14 297 1 256 279 93 0 chr5 5820086 5820172 -197265360 - MER5A DNA MER1_type -29 160 67 184 111 0 0 chr5 5820253 5820280 -197265252 - MER5A DNA MER1_type -161 28 2 5492 107 102 78 chr5 5820683 5822233 -197263299 - pTR5 LTR ERV1 0 2438 743 2203 191 42 2 chr5 5822320 5822744 -197262788 - MLT1C LTR MaLR -26 441 1 960 135 0 0 chr5 5823997 5824130 -197261402 - AluJb SINE Alu -179 133 1 2807 176 20 20 chr5 5824450 5825008 -197260524 - MER89 LTR ERV1 -1 558 1 2335 95 0 0 chr5 5825147 5825443 -197260089 - AluSg SINE Alu -14 296 1 1312 155 28 53 chr5 5825507 5825959 -197259573 - THE1C LTR MaLR 0 375 2 246 58 0 58 chr5 5825959 5826011 -197259521 + (TA)n Simple_repeat Simple_repeat 2 50 0 2459 60 0 3 chr5 5828342 5828640 -197256892 + AluY SINE Alu 1 297 -14 237 237 0 17 chr5 5828910 5828969 -197256563 - L1ME LINE L1 -521 5583 5526 333 251 64 29 chr5 5829004 5829163 -197256369 - L1ME LINE L1 -682 5422 5296 325 280 140 51 chr5 5829668 5830061 -197255471 - L2 LINE L2 -44 3269 2842 482 274 19 42 chr5 5830099 5830143 -197255389 - L2 LINE L2 -788 2526 2482 2045 202 44 13 chr5 5830143 5830594 -197254938 - MLT1C LTR MaLR -2 465 1 482 274 19 42 chr5 5830594 5830764 -197254768 - L2 LINE L2 -832 2482 2317 454 226 70 148 chr5 5832064 5832558 -197252974 - L1ME LINE L1 -3289 2840 2425 1997 149 0 0 chr5 5832558 5832874 -197252658 - AluSx SINE Alu 0 316 1 454 226 70 148 chr5 5832874 5833147 -197252385 - L1ME LINE L1 -3704 2425 2132 1669 147 110 40 chr5 5833407 5833753 -197251779 + THE1C LTR MaLR 1 370 -5 228 241 161 0 chr5 5833758 5833845 -197251687 - L1ME LINE L1 -6015 104 4 22 35 0 0 chr5 5833854 5833883 -197251649 + AT_rich Low_complexity Low_complexity 1 29 0 209 138 17 52 chr5 5834016 5834074 -197251458 + (TA)n Simple_repeat Simple_repeat 2 57 0 2822 129 26 5 chr5 5834106 5834525 -197251007 + MSTA LTR MaLR 1 428 0 4831 144 2 188 chr5 5834527 5834995 -197250537 + MSTA-int LTR MaLR 3 282 -1298 1281 126 0 22 chr5 5834995 5835177 -197250355 + AluSx SINE Alu 40 217 -95 4831 144 2 188 chr5 5835177 5835854 -197249678 + MSTA-int LTR MaLR 282 1083 -497 384 89 38 25 chr5 5836274 5836353 -197249179 + T-rich Low_complexity Low_complexity 2 81 0 1851 164 6 25 chr5 5836355 5836672 -197248860 - AluJo SINE Alu -1 311 1 518 236 27 0 chr5 5837938 5838048 -197247484 - MER81 DNA DNA 0 114 2 288 229 72 24 chr5 5838296 5838379 -197247153 + MLT1K LTR MaLR 502 588 0 203 294 0 35 chr5 5838504 5838589 -197246943 - L3 LINE CR1 -22 1555 1474 2663 52 0 0 chr5 5839097 5839402 -197246130 + AluY SINE Alu 1 305 -6 259 302 112 39 chr5 5839485 5839717 -197245815 - MLT1K LTR MaLR 0 588 340 796 203 88 39 chr5 5840080 5840379 -197245153 + MLT1A2 LTR MaLR 1 370 -4 235 219 73 42 chr5 5840589 5840685 -197244847 + MER5A DNA MER1_type 65 163 -26 227 294 52 37 chr5 5840711 5840847 -197244685 + L2 LINE L2 2947 3084 -188 1939 148 20 7 chr5 5840937 5841235 -197244297 - AluJb SINE Alu -9 303 2 355 277 0 0 chr5 5843618 5843683 -197241849 - MER2 DNA MER2_type -1 344 280 873 184 24 68 chr5 5843718 5843925 -197241607 + LTR18B LTR ERVL 1 198 -416 * 1448 113 156 19 chr5 5843921 5844178 -197241354 + LTR18B LTR ERVL 323 614 0 395 56 19 0 chr5 5844179 5844227 -197241305 - MER2 DNA MER2_type -135 210 162 1194 152 3 21 chr5 5844227 5844608 -197240924 - LTR32 LTR ERVL 0 471 6 1019 165 28 6 chr5 5844585 5844761 -197240771 - MER2 DNA MER2_type -165 180 1 * 1436 182 79 65 chr5 5845711 5846327 -197239205 + MLT1D LTR MaLR 1 505 0 2993 158 19 6 chr5 5846912 5847437 -197238095 + L1MB3 LINE L1 5651 6182 -1 274 271 79 50 chr5 5848505 5848645 -197236887 - L2 LINE L2 -26 3246 3103 1376 190 61 98 chr5 5849447 5849650 -197235882 - MLT1C LTR MaLR 0 467 258 1583 157 7 23 chr5 5849650 5849956 -197235576 - L1MA4 LINE L1 -1 6299 5999 1376 190 61 98 chr5 5849956 5850230 -197235302 - MLT1C LTR MaLR -209 258 8 238 319 194 19 chr5 5850249 5850563 -197234969 - L2 LINE L2 -910 2404 2036 275 254 140 12 chr5 5851397 5851561 -197233971 - MLT1I LTR MaLR 0 417 268 410 331 35 18 chr5 5853130 5853299 -197232233 - L2 LINE L2 0 3272 3101 323 305 17 0 chr5 5854397 5854515 -197231017 + MIR3 SINE MIR 82 201 -7 552 315 40 46 chr5 5855307 5855819 -197229713 + MER115 DNA AcHobo 54 665 -28 14212 179 79 16 chr5 5855860 5862932 -197222600 + L1MA1 LINE L1 13 7543 -178 5994 195 38 30 chr5 5862932 5863652 -197221880 - L1 LINE L1 -2695 3633 2920 879 190 0 0 chr5 5863652 5863810 -197221722 - L1PB4 LINE L1 -3 6153 5996 5994 195 38 30 chr5 5863810 5866699 -197218833 - L1 LINE L1 -3408 2920 4 615 220 69 0 chr5 5867131 5867290 -197218242 - MER45A DNA AcHobo -8 170 1 550 287 24 12 chr5 5867293 5867457 -197218075 - MIR SINE MIR -62 200 35 1591 174 18 18 chr5 5868294 5868599 -197216933 - AluJo SINE Alu 0 305 1 1313 201 7 0 chr5 5870074 5870377 -197215155 - L1PA13 LINE L1 -909 5888 5584 * 34901 93 13 10 chr5 5870367 5876483 -197209049 + L1PA6 LINE L1 11 6141 -13 8988 197 32 11 chr5 5876598 5878683 -197206849 - L1PA13 LINE L1 -1178 5619 3491 40203 56 4 0 chr5 5878701 5884833 -197200699 - L1PA5 LINE L1 -1 6153 1 5050 222 32 5 chr5 5884845 5886546 -197198986 - L1PA13 LINE L1 -3303 3494 1748 1194 129 143 34 chr5 5886547 5886683 -197198849 + MSTA LTR MaLR 1 121 -307 186 43 0 0 chr5 5886683 5886706 -197198826 + (TC)n Simple_repeat Simple_repeat 1 23 0 1194 129 143 34 chr5 5886706 5886893 -197198639 + MSTA LTR MaLR 121 428 0 1056 140 4 72 chr5 5886893 5887129 -197198403 - L1PA13 LINE L1 -5036 1751 1532 779 228 34 15 chr5 5887856 5888062 -197197470 + MLT1A1 LTR MaLR 156 365 0 1029 279 68 14 chr5 5888212 5888639 -197196893 - LTR16A LTR ERVL 0 450 1 288 262 0 12 chr5 5888646 5888730 -197196802 + Charlie7 DNA MER1_type 2530 2612 0 21 0 0 0 chr5 5889114 5889135 -197196397 + AT_rich Low_complexity Low_complexity 1 21 0 584 167 0 0 chr5 5889609 5889723 -197195809 - L1MA8 LINE L1 -22 6269 6156 37926 73 8 4 chr5 5890353 5896476 -197189056 - L1PA5 LINE L1 -2 6152 5 1656 191 46 114 chr5 5897223 5898028 -197187504 + LTR8A LTR ERV1 1 727 0 323 241 98 45 chr5 5898720 5898853 -197186679 - MIR SINE MIR -2 260 121 692 271 44 6 chr5 5898999 5899221 -197186311 + MIR SINE MIR 30 255 -7 1520 159 6 28 chr5 5899226 5899552 -197185980 + L1MA6 LINE L1 5982 6300 0 203 346 28 28 chr5 5899628 5899735 -197185797 + MIR3 SINE MIR 70 176 -32 1006 156 91 0 chr5 5899842 5900041 -197185491 + L1PA16 LINE L1 5947 6163 -3 1804 171 49 38 chr5 5900348 5900797 -197184735 - Charlie4a DNA MER1_type -11 497 44 1001 231 33 0 chr5 5903679 5903891 -197181641 - MER20 DNA MER1_type 0 219 1 219 261 31 0 chr5 5904296 5904361 -197181171 + (TCTCTG)n Simple_repeat Simple_repeat 2 68 0 603 144 0 11 chr5 5904534 5904722 -197180810 - L1MB2 LINE L1 -7 6164 5815 339 136 0 0 chr5 5904722 5904781 -197180751 + (TCC)n Simple_repeat Simple_repeat 3 61 0 1995 98 56 0 chr5 5904781 5905047 -197180485 - AluSq SINE Alu -32 281 1 2763 156 4 2 chr5 5905050 5905538 -197179994 - L1MB2 LINE L1 -350 5821 5333 927 172 60 60 chr5 5907070 5907303 -197178229 + MER106A DNA MER1_type 3 235 -1 737 321 138 30 chr5 5907777 5908585 -197176947 - L2 LINE L2 -2 3311 2186 1003 238 38 61 chr5 5909000 5909395 -197176137 - L1MA9 LINE L1 -25 6287 5902 261 0 0 0 chr5 5910897 5910926 -197174606 + (CA)n Simple_repeat Simple_repeat 2 30 0 362 284 69 17 chr5 5911647 5911763 -197173769 + MIR3 SINE MIR 49 170 -38 24 0 0 0 chr5 5912212 5912236 -197173296 + AT_rich Low_complexity Low_complexity 1 24 0 1964 131 67 64 chr5 5912325 5912699 -197172833 + THE1C LTR MaLR 1 375 0 2524 107 14 3 chr5 5914131 5914477 -197171055 - L1PB1 LINE L1 -3 6148 5799 2302 153 135 7 chr5 5914581 5915032 -197170500 + MLT2B1 LTR ERVL 1 509 -11 333 0 0 0 chr5 5915784 5915821 -197169711 + (CA)n Simple_repeat Simple_repeat 2 38 0 288 182 73 0 chr5 5915962 5916017 -197169515 - MLT1K LTR MaLR 0 588 530 12323 165 34 43 chr5 5916268 5919727 -197165805 - L1M1 LINE L1 -510 5792 2367 1062 211 124 60 chr5 5919731 5920166 -197165366 - MLT1C LTR MaLR 0 467 5 783 236 28 6 chr5 5920279 5920457 -197165075 + MER5A DNA MER1_type 4 185 -4 2068 182 63 40 chr5 5920720 5921164 -197164368 + MLT1C LTR MaLR 9 462 -5 4257 151 15 34 chr5 5924529 5924584 -197160948 - LTR8A LTR ERV1 0 727 672 1920 162 58 36 chr5 5924584 5924949 -197160583 + THE1C LTR MaLR 1 373 -2 4257 151 15 34 chr5 5924949 5925634 -197159898 - LTR8A LTR ERV1 -55 672 1 7445 54 17 0 chr5 5925924 5927208 -197158324 + L1PA7 LINE L1 4854 6152 -2 650 188 8 0 chr5 5927669 5927786 -197157746 - MLT1B LTR MaLR 0 467 350 * 1785 233 97 61 chr5 5927783 5928483 -197157049 + MER50 LTR ERV1 10 734 0 1373 142 9 108 chr5 5928484 5928800 -197156732 - MLT1B LTR MaLR -105 285 1 259 137 0 39 chr5 5930272 5930323 -197155209 - MLT2D LTR ERVL 0 464 416 734 200 23 9 chr5 5930326 5930581 -197154951 - MLT2D LTR ERVL -194 220 1 238 240 27 53 chr5 5930921 5930996 -197154536 + L3 LINE CR1 602 674 -903 507 313 129 41 chr5 5932633 5933350 -197152182 + L2 LINE L2 2544 3313 0 413 197 26 0 chr5 5933641 5933717 -197151815 + MER21B LTR ERV1 17 94 -769 446 245 73 81 chr5 5933726 5933800 -197151732 - L1ME4a LINE L1 -177 5944 5871 2588 180 19 41 chr5 5933800 5934316 -197151216 + MLT1D LTR MaLR 1 505 0 446 245 73 81 chr5 5934316 5934443 -197151089 - L1ME4a LINE L1 -250 5871 5745 3973 107 58 2 chr5 5934443 5935012 -197150520 - LTR43 LTR ERV1 -1 601 1 446 245 73 81 chr5 5935012 5935193 -197150339 - L1ME4a LINE L1 -376 5745 5564 28 48 0 0 chr5 5935687 5935729 -197149803 + AT_rich Low_complexity Low_complexity 1 42 0 1406 216 76 38 chr5 5936446 5936891 -197148641 - MLT1C LTR MaLR 0 467 6 1985 204 78 21 chr5 5936980 5937059 -197148473 + MER89 LTR ERV1 2 75 -484 2307 110 59 31 chr5 5937059 5937413 -197148119 - THE1B LTR MaLR 0 364 1 1985 204 78 21 chr5 5937413 5937444 -197148088 + MER89 LTR ERV1 75 103 -456 2381 117 0 61 chr5 5937444 5937803 -197147729 + MER1B DNA MER1_type 1 337 0 1985 204 78 21 chr5 5937803 5938215 -197147317 + MER89 LTR ERV1 103 555 -4 584 242 81 38 chr5 5940046 5940445 -197145087 - MLT1D LTR MaLR -11 615 4 21 36 0 0 chr5 5940948 5940976 -197144556 + AT_rich Low_complexity Low_complexity 1 28 0 5694 91 0 0 chr5 5943000 5943705 -197141827 - L1PA10 LINE L1 -16 6152 5448 526 85 12 0 chr5 5943705 5943787 -197141745 + L1P LINE L1 5344 5426 -742 749 226 5 0 chr5 5943927 5944117 -197141415 + L1MA4 LINE L1 6110 6300 0 2120 104 22 0 chr5 5944197 5944475 -197141057 + AluSx SINE Alu 1 284 -28 28 29 0 0 chr5 5944475 5944510 -197141022 + AT_rich Low_complexity Low_complexity 1 35 0 328 191 38 107 chr5 5944780 5944911 -197140621 - L1MA4 LINE L1 0 6300 6179 * 338 302 21 58 chr5 5944830 5945019 -197140513 - L1PA16 LINE L1 -33 6133 5952 892 250 83 70 chr5 5945105 5945561 -197139971 + MLT1C LTR MaLR 6 467 0 1785 119 42 18 chr5 5945641 5945927 -197139605 + L1MC1 LINE L1 6033 6325 -8 1516 301 191 43 chr5 5946223 5947748 -197137784 + L2 LINE L2 1137 2887 -427 2660 172 14 2 chr5 5947771 5948190 -197137342 + MSTB LTR MaLR 1 424 -2 1349 181 0 14 chr5 5948223 5948444 -197137088 - MER20 DNA MER1_type -1 218 1 4523 166 159 31 chr5 5948483 5949512 -197136020 - L1P LINE L1 -4397 1749 589 15762 90 16 0 chr5 5949528 5952412 -197133120 + L1PA7 LINE L1 3253 6153 -1 2806 113 14 0 chr5 5952462 5952832 -197132700 + THE1C LTR MaLR 1 375 0 406 204 65 19 chr5 5952847 5952955 -197132577 + MIR SINE MIR 118 230 -32 2241 185 42 81 chr5 5953397 5953938 -197131594 + MLT2B1 LTR ERVL 1 520 0 621 251 29 12 chr5 5953938 5954109 -197131423 - MLT1J2 LTR MaLR -269 181 8 210 318 16 0 chr5 5954136 5954199 -197131333 + L2 LINE L2 3248 3311 -2 28 0 0 0 chr5 5954245 5954273 -197131259 + AT_rich Low_complexity Low_complexity 1 28 0 225 239 16 43 chr5 5954273 5954457 -197131075 + (TTA)n Simple_repeat Simple_repeat 1 179 0 33 0 0 0 chr5 5954460 5954493 -197131039 + AT_rich Low_complexity Low_complexity 1 33 0 354 233 35 35 chr5 5954564 5954650 -197130882 + MIR SINE MIR 51 136 -72 404 194 0 11 chr5 5955092 5955185 -197130347 + MER53 DNA DNA 97 188 -1 1349 196 99 54 chr5 5956235 5956402 -197129130 + MLT1B LTR MaLR 1 159 -231 2199 117 3 10 chr5 5956402 5956709 -197128823 + AluSc SINE Alu 1 305 -4 1349 196 99 54 chr5 5956709 5956914 -197128618 + MLT1B LTR MaLR 159 390 0 292 324 76 0 chr5 5960767 5960912 -197124620 - L1ME4a LINE L1 -2 6119 5964 338 224 0 0 chr5 5960937 5961004 -197124528 - MLT1H LTR MaLR -2 547 481 4777 124 35 11 chr5 5961015 5961757 -197123775 - MER4E LTR ERV1 0 779 20 320 305 12 43 chr5 5962333 5962383 -197123149 - L1ME4a LINE L1 -171 5950 5900 1364 216 32 118 chr5 5962383 5962952 -197122580 - MLT2B1 LTR ERVL 0 520 1 320 305 12 43 chr5 5962952 5963065 -197122467 - L1ME4a LINE L1 -221 5900 5792 507 271 73 53 chr5 5963227 5963474 -197122058 - L2 LINE L2 -5 3308 3057 410 274 45 67 chr5 6065145 6065324 -197020208 - MER5B DNA MER1_type -3 175 1 1453 187 127 31 chr5 6066277 6066662 -197018870 - Charlie1 DNA MER1_type -58 2703 2282 412 305 64 0 chr5 6066655 6066796 -197018736 - Charlie1 DNA MER1_type -2611 150 1 * 319 348 106 28 chr5 6067548 6068189 -197017343 + L2 LINE L2 2040 2730 -584 452 301 99 6 chr5 6068315 6068620 -197016912 - L1ME LINE L1 -5605 465 125 331 239 229 0 chr5 6070002 6070111 -197015421 + L2 LINE L2 3122 3255 -17 468 230 121 40 chr5 6070614 6070788 -197014744 + L1ME LINE L1 5513 5700 -470 1160 103 7 0 chr5 6070877 6071032 -197014500 - L1PA15 LINE L1 -8 6157 6002 2089 122 13 7 chr5 6071130 6071433 -197014099 + AluSx SINE Alu 1 305 -7 2173 117 3 3 chr5 6071434 6071734 -197013798 + AluSx SINE Alu 2 301 -11 23 33 0 0 chr5 6071921 6071951 -197013581 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr5 6072504 6072530 -197013002 + AT_rich Low_complexity Low_complexity 1 26 0 845 265 142 0 chr5 6072564 6072783 -197012749 + MIR SINE MIR 6 255 -7 1581 206 14 89 chr5 6073194 6073270 -197012262 + MSTD LTR MaLR 1 81 -315 2324 97 3 0 chr5 6073270 6073570 -197011962 - AluY SINE Alu -10 301 1 1581 206 14 89 chr5 6073570 6073921 -197011611 + MSTD LTR MaLR 81 396 0 481 260 133 17 chr5 6073970 6074151 -197011381 + MLT1H LTR MaLR 346 547 -2 3785 105 20 0 chr5 6074373 6074879 -197010653 - L1PA10 LINE L1 -1 6167 5652 6991 114 17 39 chr5 6074901 6075131 -197010401 - L1PA10 LINE L1 -494 5674 5441 2013 132 7 3 chr5 6075131 6075418 -197010114 - AluSx SINE Alu -24 288 1 6991 114 17 39 chr5 6075418 6076623 -197008909 - L1PA10 LINE L1 -727 5441 4277 1220 204 4 4 chr5 6076644 6076874 -197008658 - L1P3 LINE L1 -4946 929 700 910 201 54 10 chr5 6077075 6077279 -197008253 + MER20 DNA MER1_type 7 219 0 830 266 64 53 chr5 6078084 6078445 -197007087 - MLT2F LTR ERVL -19 644 280 1048 196 47 17 chr5 6078461 6078696 -197006836 + MER96B DNA MER1_type? 176 417 0 545 339 23 23 chr5 6078700 6078957 -197006575 - MLT2F LTR ERVL -390 273 17 29 0 0 0 chr5 6081136 6081165 -197004367 + AT_rich Low_complexity Low_complexity 1 29 0 268 203 8 154 chr5 6082471 6082594 -197002938 + MER102a DNA MER1_type 222 326 -4 23 0 0 0 chr5 6083136 6083159 -197002373 + AT_rich Low_complexity Low_complexity 1 23 0 365 268 5 15 chr5 6083717 6083877 -197001655 + CT-rich Low_complexity Low_complexity 1 161 -330 2060 127 3 10 chr5 6083877 6084177 -197001355 - AluSx SINE Alu -13 299 2 365 268 5 15 chr5 6084177 6084213 -197001319 + CT-rich Low_complexity Low_complexity 161 491 0 465 286 15 53 chr5 6084615 6084825 -197000707 + MIR SINE MIR 62 262 0 325 334 75 93 chr5 6086916 6087248 -196998284 + L2 LINE L2 2942 3267 -5 377 327 186 10 chr5 6087451 6087757 -196997775 - L2 LINE L2 -1005 2309 1950 2486 215 18 28 chr5 6087878 6088193 -196997339 - MER68 LTR ERV1 -11 551 234 2593 109 31 14 chr5 6088193 6088551 -196996981 + THE1B LTR MaLR 1 364 0 11017 104 38 35 chr5 6088551 6090127 -196995405 + THE1B-int LTR MaLR 1 1580 0 2598 131 8 3 chr5 6090129 6090489 -196995043 + THE1B LTR MaLR 3 364 0 2486 215 18 28 chr5 6090489 6090672 -196994860 - MER68 LTR ERV1 -328 234 54 631 289 80 56 chr5 6091352 6092315 -196993217 + L1MEc LINE L1 835 1703 -4512 436 296 32 26 chr5 6092480 6092669 -196992863 + L2 LINE L2 2511 2700 -614 1983 128 3 20 chr5 6093114 6093418 -196992114 - AluSx SINE Alu -13 299 1 207 310 13 95 chr5 6094089 6094199 -196991333 + MIR3 SINE MIR 13 108 -100 2146 87 20 13 chr5 6094199 6094499 -196991033 + AluY SINE Alu 1 302 -9 207 310 13 95 chr5 6094499 6094546 -196990986 + MIR3 SINE MIR 108 157 -51 1669 168 0 38 chr5 6094849 6095164 -196990368 + AluJo SINE Alu 1 303 -9 322 336 0 8 chr5 6096281 6096403 -196989129 - L2 LINE L2 -5 3308 3188 369 258 156 21 chr5 6096502 6096688 -196988844 - Charlie8 DNA MER1_type -2141 276 66 225 0 0 0 chr5 6096709 6096734 -196988798 + (A)n Simple_repeat Simple_repeat 1 25 0 739 300 123 3 chr5 6096856 6097173 -196988359 + LTR16B LTR ERVL 20 374 -90 259 226 60 75 chr5 6098928 6099061 -196986471 - L1ME3A LINE L1 -9 6161 6031 486 233 23 8 chr5 6099170 6099299 -196986233 - L1ME3A LINE L1 -208 5962 5832 * 848 181 21 0 chr5 6099297 6099441 -196986091 + L1M3e LINE L1 158 304 -6726 2108 226 97 30 chr5 6099442 6100167 -196985365 + L1M3e LINE L1 1286 2058 -4972 1017 125 46 0 chr5 6100179 6100331 -196985201 - L1PA11 LINE L1 0 6174 6016 3353 155 11 33 chr5 6100332 6100966 -196984566 - L1MA4 LINE L1 -15 6285 5666 259 293 55 22 chr5 6100970 6101151 -196984381 - L1MEd LINE L1 -5338 781 595 340 196 0 150 chr5 6101939 6101963 -196983569 + MER105 DNA DNA 33 59 -145 4883 165 10 33 chr5 6101963 6102775 -196982757 - MER54B LTR ERVL 0 793 1 340 196 0 150 chr5 6102775 6102903 -196982629 + MER105 DNA DNA 59 162 -42 2695 166 17 23 chr5 6103328 6103798 -196981734 + MLT1C LTR MaLR 1 467 0 2060 168 25 98 chr5 6104144 6104632 -196980900 + MER66A LTR ERV1 27 478 0 24 0 0 0 chr5 6104905 6104929 -196980603 + AT_rich Low_complexity Low_complexity 1 24 0 501 309 124 0 chr5 6108217 6108411 -196977121 + MIR SINE MIR 9 226 -36 27 0 0 0 chr5 6108988 6109015 -196976517 + AT_rich Low_complexity Low_complexity 1 27 0 1399 165 15 4 chr5 6109044 6109304 -196976228 - L1MA7 LINE L1 -9 6282 6020 318 294 76 34 chr5 6109376 6109495 -196976037 + MIR3 SINE MIR 83 206 -2 1173 158 5 26 chr5 6109705 6109895 -196975637 - MER5A DNA MER1_type -3 186 1 1150 256 92 19 chr5 6109909 6110323 -196975209 + LTR16A1 LTR ERVL 14 457 0 1137 140 8 103 chr5 6112504 6112747 -196972785 - MLT1A2 LTR MaLR -154 220 1 338 342 128 53 chr5 6113089 6113537 -196971995 - L2 LINE L2 -65 3207 2725 1519 247 112 34 chr5 6113557 6114022 -196971510 + MLT1E LTR MaLR 3 503 -90 377 247 0 0 chr5 6114161 6114246 -196971286 + MLT1E LTR MaLR 569 653 -1 2205 118 3 10 chr5 6115151 6115464 -196970068 + AluSx SINE Alu 2 312 0 383 300 136 36 chr5 6115527 6115692 -196969840 + L1MCc LINE L1 1282 1429 -5693 1732 260 33 18 chr5 6115692 6116149 -196969383 - LTR40c LTR ERVL -1 464 1 383 300 136 36 chr5 6116149 6116773 -196968759 + L1MCc LINE L1 1429 2361 -4761 785 126 8 8 chr5 6116778 6116939 -196968593 + AluY SINE Alu 180 311 0 345 299 45 6 chr5 6116948 6117105 -196968427 + L1MCc LINE L1 2367 2529 -4593 432 230 67 67 chr5 6119498 6119663 -196965869 + MER5A DNA MER1_type 25 189 0 329 319 11 0 chr5 6119846 6119940 -196965592 - L2 LINE L2 -3 3310 3216 289 187 220 0 chr5 6119972 6120063 -196965469 + L2 LINE L2 3202 3312 -1 560 293 153 58 chr5 6120247 6120714 -196964818 - ERVL LTR ERVL -4057 1707 1143 192 77 0 0 chr5 6120714 6120740 -196964792 + (CAGC)n Simple_repeat Simple_repeat 1 26 0 560 293 153 58 chr5 6120740 6121010 -196964522 - ERVL LTR ERVL -4621 1143 900 1178 155 23 41 chr5 6121175 6121394 -196964138 + MER20 DNA MER1_type 1 215 -4 2315 113 89 15 chr5 6121461 6121798 -196963734 - THE1B LTR MaLR -2 362 1 220 289 132 8 chr5 6121944 6122065 -196963467 - MIR3 SINE MIR -69 139 4 353 305 153 25 chr5 6123350 6123553 -196961979 - MIR SINE MIR -10 252 24 315 217 101 0 chr5 6123943 6124012 -196961520 + MER116 DNA Mariner 1 76 -4 21 0 0 0 chr5 6124014 6124035 -196961497 + AT_rich Low_complexity Low_complexity 1 21 0 4497 101 5 15 chr5 6124361 6124967 -196960565 + MER4A LTR ERV1 1 600 0 191 287 154 37 chr5 6125701 6125837 -196959695 + MIR3 SINE MIR 19 170 -38 324 294 42 25 chr5 6125925 6126044 -196959488 + L3b LINE CR1 1129 1249 -334 304 308 68 14 chr5 6126399 6126620 -196958912 - L1ME LINE L1 -392 5729 5497 267 31 0 0 chr5 6127115 6127147 -196958385 + (TG)n Simple_repeat Simple_repeat 1 32 0 288 184 64 21 chr5 6127157 6127531 -196958001 + (TCTA)n Simple_repeat Simple_repeat 1 439 -24 312 91 0 0 chr5 6127531 6127575 -196957957 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 288 184 64 21 chr5 6127575 6127602 -196957930 + (TCTA)n Simple_repeat Simple_repeat 439 463 0 191 276 16 114 chr5 6129295 6129327 -196956205 - L2 LINE L2 -227 3045 3011 2310 125 0 0 chr5 6129327 6129640 -196955892 + AluSq SINE Alu 1 313 0 191 276 16 114 chr5 6129640 6129730 -196955802 - L2 LINE L2 -261 3011 2935 447 330 122 36 chr5 6129876 6129951 -196955581 - L2 LINE L2 -535 2779 2712 1334 208 3 61 chr5 6129951 6130118 -196955414 - AluJb SINE Alu -17 295 153 240 59 0 0 chr5 6130118 6130152 -196955380 + (TG)n Simple_repeat Simple_repeat 1 34 0 1334 208 3 61 chr5 6130152 6130297 -196955235 - AluJb SINE Alu -159 153 1 447 330 122 36 chr5 6130297 6131001 -196954531 - L2 LINE L2 -602 2712 1933 28 102 0 0 chr5 6131600 6131698 -196953834 + AT_rich Low_complexity Low_complexity 1 98 0 1048 240 71 106 chr5 6131709 6132220 -196953312 + L1MC4 LINE L1 6637 7123 -838 2679 99 34 6 chr5 6132220 6132574 -196952958 + THE1B LTR MaLR 1 364 0 1048 240 71 106 chr5 6132574 6132630 -196952902 + L1MC4 LINE L1 7123 7179 -782 2209 94 14 3 chr5 6132892 6133178 -196952354 - AluSq SINE Alu -16 297 9 261 324 135 40 chr5 6133548 6133919 -196951613 + LTR33 LTR ERVL 116 521 0 186 133 0 0 chr5 6133986 6134016 -196951516 + (TTTC)n Simple_repeat Simple_repeat 1 30 0 219 127 36 18 chr5 6134042 6134097 -196951435 + CT-rich Low_complexity Low_complexity 2 57 0 624 136 0 68 chr5 6134097 6134288 -196951244 + (TTCCC)n Simple_repeat Simple_repeat 2 179 0 569 235 37 37 chr5 6134336 6134498 -196951034 + MER106B DNA MER1_type 897 1058 -1 180 0 0 0 chr5 6134710 6134730 -196950802 + (T)n Simple_repeat Simple_repeat 1 20 0 284 289 149 35 chr5 6134873 6135074 -196950458 + L1MC4a LINE L1 5692 5915 -1893 2316 96 0 0 chr5 6135101 6135402 -196950130 + AluY SINE Alu 1 301 -10 236 327 14 108 chr5 6135460 6135683 -196949849 - L2 LINE L2 -247 3066 2865 217 299 13 13 chr5 6135834 6135911 -196949621 - MIR SINE MIR -121 141 65 349 292 6 35 chr5 6137214 6137385 -196948147 - L1ME4a LINE L1 -278 5843 5678 683 290 98 45 chr5 6137488 6137885 -196947647 + MLT1J LTR MaLR 85 502 -9 325 359 14 14 chr5 6138162 6138307 -196947225 + MER5B DNA MER1_type 34 178 0 1002 256 209 2 chr5 6138917 6139339 -196946193 + MLT1H LTR MaLR 39 547 -2 1764 173 37 58 chr5 6139672 6140054 -196945478 + THE1C LTR MaLR 1 374 -1 680 187 65 0 chr5 6140115 6140254 -196945278 - L1MB7 LINE L1 -20 6164 6017 310 262 103 8 chr5 6140744 6140870 -196944662 - L1ME4a LINE L1 -6 6115 5978 228 127 55 0 chr5 6142277 6142332 -196943200 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 776 244 135 70 chr5 6144074 6144367 -196941165 - MLT1J LTR MaLR 0 511 182 1815 189 141 12 chr5 6144367 6144779 -196940753 - MLT1C LTR MaLR -2 465 1 776 244 135 70 chr5 6144779 6144899 -196940633 - MLT1J LTR MaLR -329 182 71 245 292 142 33 chr5 6144928 6145048 -196940484 + L2 LINE L2 3101 3233 -39 207 104 62 0 chr5 6145410 6145458 -196940074 + (TA)n Simple_repeat Simple_repeat 2 52 0 547 304 164 44 chr5 6145474 6145924 -196939608 - L2 LINE L2 -2 3311 2808 571 321 146 0 chr5 6145935 6146222 -196939310 - L2 LINE L2 -960 2354 2026 2108 208 6 0 chr5 6146383 6146744 -196938788 - MLT1A1 LTR MaLR -2 363 1 421 275 140 0 chr5 6147422 6147600 -196937932 - L2 LINE L2 -1291 2023 1821 403 164 27 0 chr5 6147868 6147941 -196937591 - L1MD1 LINE L1 -1 6241 6167 1745 191 77 9 chr5 6148086 6148436 -196937096 - MLT1A2 LTR MaLR 0 374 1 3306 247 89 70 chr5 6148439 6149776 -196935756 - MLT1A2-int LTR MaLR -5 1366 5 27 0 0 0 chr5 6149829 6149856 -196935676 + AT_rich Low_complexity Low_complexity 1 27 0 15044 154 47 13 chr5 6149876 6154824 -196930708 - L1PB1 LINE L1 -2 6865 1626 2304 96 0 3 chr5 6154824 6155126 -196930406 - AluY SINE Alu -10 301 1 15044 154 47 13 chr5 6155126 6156155 -196929377 - L1PB1 LINE L1 -5241 1626 634 1226 138 10 0 chr5 6156155 6156351 -196929181 - L1PB1 LINE L1 -6663 200 3 1559 223 36 31 chr5 6156371 6156565 -196928967 - MLT1A2 LTR MaLR -13 361 163 1874 132 4 0 chr5 6156565 6156837 -196928695 - AluSx SINE Alu -39 273 1 1559 223 36 31 chr5 6156837 6157001 -196928531 - MLT1A2 LTR MaLR -211 163 1 227 328 86 8 chr5 6157174 6157302 -196928230 + L2 LINE L2 2965 3102 -170 767 184 123 0 chr5 6157469 6157632 -196927900 - MER20 DNA MER1_type 0 219 37 265 375 15 29 chr5 6159144 6159280 -196926252 - MIR SINE MIR -58 150 17 1638 216 66 46 chr5 6159333 6159832 -196925700 - L1MB7 LINE L1 -10 6174 5666 730 188 78 42 chr5 6160399 6160591 -196924941 - MER20 DNA MER1_type -20 199 1 306 73 0 0 chr5 6160985 6161026 -196924506 + (T)n Simple_repeat Simple_repeat 1 41 0 420 213 12 0 chr5 6161180 6161260 -196924272 + MER81 DNA DNA 2 82 -32 183 263 0 0 chr5 6162317 6162355 -196923177 - L2 LINE L2 -25 3247 3210 1337 144 25 24 chr5 6162579 6162818 -196922714 + L1MA5A LINE L1 6060 6299 -1 31 0 0 0 chr5 6163337 6163368 -196922164 + AT_rich Low_complexity Low_complexity 1 31 0 200 288 0 14 chr5 6165465 6165538 -196919994 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 411 222 111 92 chr5 6165923 6166019 -196919513 + MER5B DNA MER1_type 13 115 -63 2003 177 0 0 chr5 6166019 6166330 -196919202 - AluSx SINE Alu -1 311 1 411 222 111 92 chr5 6166330 6166386 -196919146 + MER5B DNA MER1_type 115 168 -10 231 36 0 0 chr5 6166529 6166557 -196918975 + (TG)n Simple_repeat Simple_repeat 2 29 0 1964 130 7 36 chr5 6166807 6167114 -196918418 + AluSx SINE Alu 1 298 -14 204 97 0 0 chr5 6167124 6167155 -196918377 + (CA)n Simple_repeat Simple_repeat 2 32 0 1152 285 21 5 chr5 6167187 6167570 -196917962 + HsTC2c DNA Tc2 29 417 -312 580 285 121 16 chr5 6167649 6167954 -196917578 + MLT1I LTR MaLR 54 390 -19 767 259 32 16 chr5 6167991 6168242 -196917290 + HsTC2c DNA Tc2 470 724 -5 22 0 0 0 chr5 6169133 6169155 -196916377 + AT_rich Low_complexity Low_complexity 1 22 0 351 296 58 48 chr5 6169497 6169686 -196915846 + MIR3 SINE MIR 11 201 -7 261 310 112 35 chr5 6170566 6170682 -196914850 - L2 LINE L2 -5 3267 3143 438 268 60 36 chr5 6171055 6171223 -196914309 + MER5B DNA MER1_type 3 174 -4 233 214 133 31 chr5 6171784 6171882 -196913650 - MARNA DNA Mariner -198 388 281 1314 221 88 16 chr5 6172746 6173131 -196912401 + MLT1C LTR MaLR 1 413 -54 817 260 28 44 chr5 6173594 6173844 -196911688 - MIR SINE MIR -2 260 15 21 0 0 0 chr5 6174141 6174162 -196911370 + AT_rich Low_complexity Low_complexity 1 21 0 1168 295 166 16 chr5 6175681 6176638 -196908894 - L2 LINE L2 0 3313 2215 301 26 0 0 chr5 6176642 6176681 -196908851 + MLT2C1 LTR ERVL 3 41 -356 * 1567 174 50 23 chr5 6176677 6177019 -196908513 - MLT2C1 LTR ERVL -35 485 30 216 0 0 0 chr5 6177054 6177078 -196908454 + (CA)n Simple_repeat Simple_repeat 1 24 0 980 297 122 42 chr5 6177115 6177779 -196907753 - L2 LINE L2 -1093 2221 1505 181 211 0 26 chr5 6177791 6177829 -196907703 - MER5A DNA MER1_type -6 183 147 14080 134 24 15 chr5 6177835 6178334 -196907198 + Tigger1 DNA MER2_type 1 494 -1924 2400 179 17 2 chr5 6178334 6178754 -196906778 - MSTB LTR MaLR 0 426 1 14080 134 24 15 chr5 6178754 6179573 -196905959 + Tigger1 DNA MER2_type 494 1304 -1114 2783 16 0 0 chr5 6179573 6179877 -196905655 + AluYb8 SINE Alu 2 305 -13 14080 134 24 15 chr5 6179877 6180953 -196904579 + Tigger1 DNA MER2_type 1304 2418 0 535 257 219 25 chr5 6180955 6181192 -196904340 - L2 LINE L2 -1814 1500 1218 21894 149 18 16 chr5 6181192 6186517 -196899015 + L1MA3 LINE L1 1 5351 -2214 7304 145 19 7 chr5 6186552 6188973 -196896559 + L1MA3 LINE L1 5264 7718 -6 299 296 109 23 chr5 6189024 6189281 -196896251 - L2 LINE L2 -2167 1147 869 336 234 9 65 chr5 6189349 6189456 -196896076 - L2 LINE L2 -2742 572 472 443 251 77 158 chr5 6189480 6189812 -196895720 - L2 LINE L2 -260 3053 2696 2092 113 20 0 chr5 6189812 6190105 -196895427 - AluSx SINE Alu -9 303 5 443 251 77 158 chr5 6190105 6190245 -196895287 - L2 LINE L2 -617 2696 2546 457 256 139 0 chr5 6190245 6190382 -196895150 - MIR SINE MIR -85 177 22 443 251 77 158 chr5 6190382 6190898 -196894634 - L2 LINE L2 -767 2546 2021 26 64 0 0 chr5 6192518 6192565 -196892967 + AT_rich Low_complexity Low_complexity 1 47 0 312 283 89 64 chr5 6192610 6193002 -196892530 - L1ME4a LINE L1 -96 6025 5624 2340 96 0 7 chr5 6194232 6194534 -196890998 - AluSc SINE Alu -9 300 1 479 226 16 8 chr5 6196637 6196761 -196888771 - L1ME4a LINE L1 -1827 4319 4195 591 79 11 0 chr5 6196761 6196850 -196888682 - 5S rRNA rRNA -31 90 1 2854 262 27 15 chr5 6196860 6197864 -196887668 - L1ME4a LINE L1 -1955 4191 3176 409 263 56 44 chr5 6198190 6198350 -196887182 - MER5A DNA MER1_type -1 188 27 232 321 124 7 chr5 6198379 6198516 -196887016 - MIR3 SINE MIR -24 184 32 25 75 0 0 chr5 6198561 6198614 -196886918 + AT_rich Low_complexity Low_complexity 1 53 0 373 198 21 0 chr5 6198808 6198904 -196886628 + LTR37A LTR ERV1 323 420 -6 202 246 0 18 chr5 6199047 6199104 -196886428 + T-rich Low_complexity Low_complexity 2 57 0 285 178 50 79 chr5 6201210 6201311 -196884221 + MER31-int LTR ERV1 2924 3021 -1915 329 181 74 87 chr5 6201443 6201592 -196883940 + MER31-int LTR ERV1 3171 3317 -1619 3572 116 73 38 chr5 6201662 6202145 -196883387 + MER41B LTR ERV1 1 512 -123 2254 104 7 3 chr5 6202145 6202452 -196883080 - AluSx SINE Alu -4 308 1 3572 116 73 38 chr5 6202452 6202581 -196882951 + MER41B LTR ERV1 512 635 0 7888 27 15 0 chr5 6202787 6203772 -196881760 - L1PA4 LINE L1 -1429 4717 3718 7398 32 8 0 chr5 6203772 6205201 -196880331 + L1PA4 LINE L1 4716 6151 -4 211 309 0 0 chr5 6206396 6206451 -196879081 - MIR3 SINE MIR -2 206 152 266 291 46 20 chr5 6207185 6207336 -196878196 + MLT1J1 LTR MaLR 5 159 -287 895 289 72 35 chr5 6207355 6207811 -196877721 - LTR33 LTR ERVL -46 475 3 2304 160 33 16 chr5 6208929 6209354 -196876178 + MSTB1 LTR MaLR 1 432 0 574 108 0 0 chr5 6209445 6209528 -196876004 + AluSg/x SINE Alu 219 301 -9 391 369 111 17 chr5 6209633 6210037 -196875495 + L2 LINE L2 1380 1821 -1493 2237 164 24 12 chr5 6210044 6210458 -196875074 + MSTB1 LTR MaLR 1 419 -13 634 331 177 34 chr5 6210477 6210816 -196874716 + L2 LINE L2 1828 2117 -1197 7061 65 4 0 chr5 6210816 6212307 -196873225 - L1PA8 LINE L1 -5 6167 4674 634 331 177 34 chr5 6212307 6212768 -196872764 + L2 LINE L2 2117 2743 -571 372 169 14 13 chr5 6213016 6213101 -196872431 - MLT1D LTR MaLR -438 67 1 22 70 0 0 chr5 6213777 6213820 -196871712 + AT_rich Low_complexity Low_complexity 1 43 0 1130 62 0 0 chr5 6214292 6214436 -196871096 + L1PA4 LINE L1 6009 6152 -3 2025 98 38 21 chr5 6215572 6215859 -196869673 + AluSp SINE Alu 1 292 -21 325 283 28 9 chr5 6216413 6216519 -196869013 + MIR3 SINE MIR 71 178 -30 22 0 0 0 chr5 6216621 6216643 -196868889 + AT_rich Low_complexity Low_complexity 1 22 0 188 286 131 24 chr5 6217382 6217466 -196868066 + MIR SINE MIR 37 129 -133 273 245 21 21 chr5 6217508 6217602 -196867930 - MER103 DNA DNA -1 165 72 395 135 289 19 chr5 6217838 6217942 -196867590 - MER104 DNA Tc2 -3 177 46 22 0 0 0 chr5 6218738 6218760 -196866772 + AT_rich Low_complexity Low_complexity 1 22 0 514 289 20 26 chr5 6220243 6220462 -196865070 - MIR SINE MIR -5 257 41 908 293 113 3 chr5 6221044 6221372 -196864160 - LTR16C LTR ERVL 0 491 128 2098 138 143 8 chr5 6222483 6222853 -196862679 + MSTA LTR MaLR 9 428 0 26 0 0 0 chr5 6222900 6222926 -196862606 + AT_rich Low_complexity Low_complexity 1 26 0 1807 186 8 37 chr5 6223428 6223804 -196861728 - MLT1A1 LTR MaLR 0 365 1 1305 201 0 0 chr5 6224343 6224567 -196860965 - MER58A DNA MER1_type 0 224 1 2281 159 5 10 chr5 6224619 6225016 -196860516 + MLT2C1 LTR ERVL 1 395 -2 202 290 19 28 chr5 6225114 6225221 -196860311 + L2 LINE L2 2371 2476 -838 479 345 113 10 chr5 6225285 6225832 -196859700 + L2 LINE L2 2656 3266 -47 305 339 25 77 chr5 6225860 6226226 -196859306 - L2 LINE L2 -27 3245 2899 1820 140 97 32 chr5 6226715 6227057 -196858475 - THE1B LTR MaLR 0 364 1 406 35 35 0 chr5 6228124 6228181 -196857351 + L1PA4 LINE L1 6095 6153 -2 1550 112 5 5 chr5 6231003 6231226 -196854306 - pTR5 LTR ERV1 -2044 394 172 333 229 31 0 chr5 6231229 6231325 -196854207 - LTR30 LTR ERV1 -80 642 544 6596 117 62 79 chr5 6231325 6232630 -196852902 - pTR5 LTR ERV1 -413 2025 743 192 77 0 0 chr5 6233393 6233419 -196852113 + (A)n Simple_repeat Simple_repeat 1 26 0 952 218 143 47 chr5 6235367 6235752 -196849780 - MLT1F1 LTR MaLR -2 565 144 632 290 49 42 chr5 6237133 6237573 -196847959 + MLT1H LTR MaLR 29 549 0 306 359 59 30 chr5 6237620 6237807 -196847725 - L2 LINE L2 -1100 2214 2034 2456 36 40 10 chr5 6237807 6238109 -196847423 - AluY SINE Alu 0 311 1 306 359 59 30 chr5 6238109 6238325 -196847207 - L2 LINE L2 -1280 2034 1799 1245 247 44 84 chr5 6238394 6239094 -196846438 - L1MC4 LINE L1 -39 8003 7332 237 33 0 0 chr5 6239104 6239134 -196846398 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 679 165 17 9 chr5 6239134 6239249 -196846283 - FLAM_C SINE Alu -26 117 2 457 279 30 16 chr5 6239260 6239465 -196846067 - L1M LINE L1 -748 5398 5209 2115 111 3 38 chr5 6239487 6239802 -196845730 + AluSc SINE Alu 1 304 -5 21 0 0 0 chr5 6239833 6239854 -196845678 + AT_rich Low_complexity Low_complexity 1 21 0 334 300 23 0 chr5 6239939 6240069 -196845463 - L1M4 LINE L1 -1096 5050 4918 242 278 28 0 chr5 6240313 6240385 -196845147 - L1M4 LINE L1 -1575 4571 4498 23 0 0 0 chr5 6241191 6241214 -196844318 + AT_rich Low_complexity Low_complexity 1 23 0 2022 146 18 15 chr5 6241288 6241630 -196843902 - MER61A LTR ERV1 0 343 1 229 293 40 10 chr5 6242818 6242917 -196842615 + (TATG)n Simple_repeat Simple_repeat 2 103 0 298 318 60 7 chr5 6243119 6243270 -196842262 - MIR SINE MIR -30 232 74 226 125 0 0 chr5 6244841 6244873 -196840659 - MLT2C2 LTR ERVL 0 554 523 2320 165 22 2 chr5 6245040 6245440 -196840092 - MLT2C2 LTR ERVL -56 408 1 283 182 0 0 chr5 6245545 6245600 -196839932 - Charlie8 DNA MER1_type -1002 1415 1361 234 91 0 0 chr5 6245692 6245725 -196839807 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 1912 129 18 7 chr5 6245776 6246079 -196839453 + AluSx SINE Alu 1 306 0 4016 136 22 14 chr5 6246080 6246748 -196838784 - L1MB1 LINE L1 -23 6145 5472 340 142 55 8 chr5 6246748 6246875 -196838657 + (TA)n Simple_repeat Simple_repeat 2 134 0 1281 129 13 67 chr5 6246875 6247206 -196838326 - L1MB1 LINE L1 -743 5403 5157 282 294 220 0 chr5 6247565 6247742 -196837790 - Charlie8 DNA MER1_type -2157 260 45 1970 216 121 0 chr5 6247826 6248307 -196837225 - MLT1F LTR MaLR 0 542 4 574 263 105 70 chr5 6248479 6248541 -196836991 + MLT1L LTR MaLR 209 267 -348 1290 73 0 0 chr5 6248541 6248705 -196836827 - L1PA8 LINE L1 0 6172 6009 574 263 105 70 chr5 6248705 6248927 -196836605 + MLT1L LTR MaLR 267 503 -112 1677 105 0 0 chr5 6250035 6250281 -196835251 - AluSg/x SINE Alu 0 310 65 1960 136 0 11 chr5 6251884 6252170 -196833362 - AluSq SINE Alu -30 283 1 978 294 59 25 chr5 6252713 6253151 -196832381 - L1MC/D LINE L1 -2041 5767 5315 461 240 72 8 chr5 6255074 6255199 -196830333 - MLT1H LTR MaLR 0 549 417 960 169 47 42 chr5 6255252 6255465 -196830067 - MER20 DNA MER1_type -5 214 1 387 41 0 0 chr5 6256470 6256519 -196829013 + (TG)n Simple_repeat Simple_repeat 2 50 0 2206 157 8 38 chr5 6256728 6257123 -196828409 + MLT1B LTR MaLR 1 383 -7 208 279 19 67 chr5 6257687 6257791 -196827741 + L3b LINE CR1 1393 1491 -92 249 307 27 20 chr5 6259425 6259575 -196825957 - L1MC/D LINE L1 -1499 4647 4497 204 200 0 0 chr5 6260615 6260660 -196824872 + CT-rich Low_complexity Low_complexity 3 47 0 2266 113 3 0 chr5 6260683 6260992 -196824540 - AluSp SINE Alu -3 310 1 191 35 0 35 chr5 6261104 6261133 -196824399 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 2198 115 0 7 chr5 6261142 6261438 -196824094 - AluSx SINE Alu -10 302 9 2047 121 3 50 chr5 6264175 6264497 -196821035 - AluSp SINE Alu -6 307 1 1053 221 174 43 chr5 6266266 6266704 -196818828 - MLT1D LTR MaLR -10 495 1 276 269 47 41 chr5 6266751 6266922 -196818610 + Charlie2 DNA MER1_type 413 584 -2278 401 229 95 56 chr5 6267083 6267262 -196818270 + Charlie2a DNA MER1_type 1496 1681 -1181 1647 233 113 53 chr5 6267462 6268246 -196817286 + Charlie2a DNA MER1_type 1807 2645 -217 705 240 88 0 chr5 6268246 6268417 -196817115 - MER5A DNA MER1_type -3 186 1 1647 233 113 53 chr5 6268417 6268461 -196817071 + Charlie2a DNA MER1_type 2645 2685 -177 196 154 39 0 chr5 6268503 6268555 -196816977 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 2085 194 52 47 chr5 6269678 6270297 -196815235 - LTR29 LTR ERV1 0 622 1 2196 81 7 24 chr5 6270454 6270749 -196814783 + AluSp SINE Alu 1 290 -23 416 293 159 21 chr5 6270758 6271048 -196814484 - L1ME4a LINE L1 -50 6071 5742 308 250 18 27 chr5 6271059 6271171 -196814361 + CT-rich Low_complexity Low_complexity 2 112 0 2106 147 3 0 chr5 6271559 6271866 -196813666 + AluSq SINE Alu 1 308 -5 27 108 0 0 chr5 6272216 6272327 -196813205 + AT_rich Low_complexity Low_complexity 1 111 0 3537 144 30 16 chr5 6272863 6273040 -196812492 - L1MA5 LINE L1 0 6300 6127 847 200 42 0 chr5 6273040 6273205 -196812327 + FAM SINE Alu 1 172 -3 3537 144 30 16 chr5 6273205 6273694 -196811838 - L1MA5 LINE L1 -173 6127 5625 513 253 77 22 chr5 6273970 6274152 -196811380 + MER117 DNA MER1_type 3 194 -3 27 29 0 0 chr5 6274511 6274545 -196810987 + AT_rich Low_complexity Low_complexity 1 34 0 183 319 159 35 chr5 6275651 6275764 -196809768 - L2 LINE L2 -37 3235 3109 434 255 176 7 chr5 6275814 6275967 -196809565 - MER5A DNA MER1_type -7 182 4 198 0 0 0 chr5 6276173 6276195 -196809337 + (T)n Simple_repeat Simple_repeat 1 22 0 8770 197 37 67 chr5 6276358 6276663 -196808869 - L1MC3 LINE L1 -1 8063 7750 1934 123 3 34 chr5 6276663 6276956 -196808576 - AluSx SINE Alu -28 284 1 8770 197 37 67 chr5 6276956 6278771 -196806761 - L1MC3 LINE L1 -314 7750 5881 6391 94 17 6 chr5 6278771 6279714 -196805818 - L1PA10 LINE L1 0 6168 5221 561 220 0 9 chr5 6279715 6279824 -196805708 - AluJo SINE Alu -85 227 120 8770 197 37 67 chr5 6279824 6280303 -196805229 - L1MC3 LINE L1 -2183 5881 5389 4340 95 5 5 chr5 6280303 6280932 -196804600 - L1PA13 LINE L1 -3 6160 5532 8770 197 37 67 chr5 6280932 6281457 -196804075 - L1MC3 LINE L1 -2675 5389 4713 2502 194 14 42 chr5 6281461 6282013 -196803519 + L1 LINE L1 3734 4269 -1877 2417 108 0 0 chr5 6282013 6282320 -196803212 + AluSc SINE Alu 1 307 -2 2502 194 14 42 chr5 6282320 6282390 -196803142 + L1 LINE L1 4269 4339 -1807 740 218 16 0 chr5 6282388 6282576 -196802956 - L1MC3 LINE L1 -1491 4724 4534 * 212 59 29 0 chr5 6282588 6282622 -196802910 + (TA)n Simple_repeat Simple_repeat 2 36 0 825 237 93 13 chr5 6282635 6282935 -196802597 - L1MC3 LINE L1 -1749 4466 4143 468 327 36 6 chr5 6283104 6283272 -196802260 - MIR SINE MIR -57 205 33 32 95 0 0 chr5 6284105 6284200 -196801332 + AT_rich Low_complexity Low_complexity 1 95 0 16208 202 20 11 chr5 6284415 6287103 -196798429 - L1PA15 LINE L1 -3 6813 4059 2227 158 44 0 chr5 6287103 6287489 -196798043 - MER57A LTR ERV1 0 403 1 16208 202 20 11 chr5 6287489 6290040 -196795492 - L1PA15 LINE L1 -2757 4059 1532 206 326 35 23 chr5 6290552 6290638 -196794894 + L2 LINE L2 3177 3263 -9 382 308 87 36 chr5 6290703 6291037 -196794495 - L1MC3 LINE L1 -3873 2523 2173 446 254 16 32 chr5 6291946 6292072 -196793460 - MIR SINE MIR -21 241 118 785 222 166 88 chr5 6292251 6292783 -196792749 + MLT1E3 LTR MaLR 1 624 0 248 227 297 16 chr5 6292786 6292914 -196792618 + MIR SINE MIR 88 251 -11 1384 213 62 37 chr5 6293616 6294020 -196791512 - MLT1C LTR MaLR -6 461 41 21 82 0 0 chr5 6294351 6294400 -196791132 + AT_rich Low_complexity Low_complexity 1 49 0 405 342 53 30 chr5 6295141 6295442 -196790090 + MLT1I LTR MaLR 37 344 -65 474 277 61 19 chr5 6295450 6295663 -196789869 + MLT1H LTR MaLR 3 224 -325 309 191 40 91 chr5 6295731 6295908 -196789624 + MLT1H LTR MaLR 325 409 0 1347 247 130 61 chr5 6296569 6297137 -196788395 - MLT1E2 LTR MaLR 0 624 1 2448 53 0 47 chr5 6297352 6297672 -196787860 + AluY SINE Alu 1 305 -6 22 35 0 0 chr5 6297696 6297725 -196787807 + AT_rich Low_complexity Low_complexity 1 29 0 421 293 140 6 chr5 6299169 6299326 -196786206 + MER5A DNA MER1_type 9 186 -3 884 259 21 13 chr5 6299345 6299581 -196785951 + MIR SINE MIR 25 262 0 1799 171 53 8 chr5 6299810 6300184 -196785348 - L1MB2 LINE L1 -4 6167 5777 387 280 95 43 chr5 6300496 6300800 -196784732 - L1ME4a LINE L1 -41 6080 5761 297 321 0 0 chr5 6300861 6300967 -196784565 - L1ME4a LINE L1 -448 5673 5568 1126 216 53 104 chr5 6300972 6301403 -196784129 + MLT2B1 LTR ERVL 6 414 0 356 176 14 54 chr5 6301535 6301609 -196783923 - L2 LINE L2 -7 3306 3236 223 186 0 0 chr5 6301831 6301874 -196783658 + A-rich Low_complexity Low_complexity 1 43 0 398 297 57 31 chr5 6301902 6302094 -196783438 - L1ME4a LINE L1 -2355 5453 5257 333 257 0 73 chr5 6302148 6302257 -196783275 - L1ME4a LINE L1 -2444 5364 5264 828 257 13 29 chr5 6302458 6302970 -196782562 - L1ME2 LINE L1 -62 6102 5493 22 0 0 0 chr5 6303441 6303463 -196782069 + AT_rich Low_complexity Low_complexity 1 22 0 1946 176 8 8 chr5 6304034 6304409 -196781123 + L1MB3 LINE L1 5480 5854 -329 268 119 0 0 chr5 6304409 6304451 -196781081 + L1M3 LINE L1 5813 5854 -329 252 143 0 0 chr5 6304451 6304493 -196781039 + L1M3 LINE L1 5813 5854 -329 1673 191 14 11 chr5 6304493 6304860 -196780672 + L1MB3 LINE L1 5813 6180 -3 856 276 83 21 chr5 6305036 6305420 -196780112 - MLT1J2 LTR MaLR -2 448 41 494 272 166 34 chr5 6306801 6307066 -196778466 - L2 LINE L2 0 3313 3014 26 0 0 0 chr5 6307654 6307680 -196777852 + AT_rich Low_complexity Low_complexity 1 26 0 28 71 0 0 chr5 6309403 6309459 -196776073 + AT_rich Low_complexity Low_complexity 1 56 0 186 350 0 30 chr5 6310482 6310582 -196774950 + MIR3 SINE MIR 107 203 -5 310 276 65 65 chr5 6311757 6311971 -196773561 - MLT1K LTR MaLR -29 559 346 425 336 60 20 chr5 6312016 6312266 -196773266 - MLT1K LTR MaLR -326 262 3 396 329 121 22 chr5 6312335 6312566 -196772966 + MIR SINE MIR 9 262 0 328 314 59 46 chr5 6312588 6312894 -196772638 + L1M4 LINE L1 3523 3832 -2314 1216 279 63 64 chr5 6313018 6313624 -196771908 + L2 LINE L2 2170 2774 -540 378 266 319 35 chr5 6313766 6313988 -196771544 + L2 LINE L2 2941 3099 -214 3433 155 15 20 chr5 6313988 6314593 -196770939 + MER7C DNA MER2_type 1 602 0 378 266 319 35 chr5 6314593 6314652 -196770880 + L2 LINE L2 3099 3302 -11 494 207 21 7 chr5 6314659 6314804 -196770728 + GA-rich Low_complexity Low_complexity 1 147 0 5322 145 44 35 chr5 6317145 6318091 -196767441 + Tigger1 DNA MER2_type 1 955 -1463 16563 166 35 8 chr5 6318098 6324406 -196761126 + L1P5 LINE L1 23 6155 -712 239 0 32 0 chr5 6324406 6324437 -196761095 + (TA)n Simple_repeat Simple_repeat 1 32 0 216 0 0 0 chr5 6324436 6324460 -196761072 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 16563 166 35 8 chr5 6324437 6324486 -196761046 + L1P5 LINE L1 6155 6534 -333 6969 139 18 22 chr5 6324491 6325638 -196759894 + Tigger1 DNA MER2_type 1276 2418 0 1475 243 0 7 chr5 6326185 6326473 -196759059 + AluJo SINE Alu 1 286 -26 705 186 81 59 chr5 6326586 6326779 -196758753 + MER20 DNA MER1_type 19 217 -2 22 35 0 0 chr5 6327659 6327688 -196757844 + AT_rich Low_complexity Low_complexity 1 29 0 892 182 18 0 chr5 6328792 6328962 -196756570 + L1MD2 LINE L1 6187 6359 0 447 19 0 0 chr5 6329549 6329601 -196755931 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 1933 156 3 10 chr5 6331029 6331324 -196754208 + AluSx SINE Alu 1 293 -19 369 62 0 0 chr5 6331325 6331373 -196754159 + (TA)n Simple_repeat Simple_repeat 1 48 0 249 260 0 27 chr5 6331739 6331812 -196753720 - 7SK RNA RNA -120 73 3 2327 100 0 3 chr5 6332441 6332741 -196752791 - AluSx SINE Alu -13 299 1 286 200 0 0 chr5 6333641 6333696 -196751836 + MIR SINE MIR 113 167 -95 211 296 217 35 chr5 6333830 6334017 -196751515 + MIR3 SINE MIR 12 227 -35 2686 185 92 7 chr5 6334576 6335161 -196750371 + L1MB4 LINE L1 5541 6175 -5 246 32 0 0 chr5 6335529 6335560 -196749972 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 498 149 0 0 chr5 6335642 6335729 -196749803 + (T)n Simple_repeat Simple_repeat 1 87 0 2432 97 0 0 chr5 6336613 6336921 -196748611 - AluSq SINE Alu -4 309 2 502 295 136 30 chr5 6337242 6337581 -196747951 - L1ME LINE L1 -330 5791 5417 343 349 113 14 chr5 6338006 6338218 -196747314 - MIR SINE MIR -9 253 21 240 231 77 87 chr5 6338411 6338515 -196747017 - MIR SINE MIR -66 196 94 185 300 33 0 chr5 6338545 6338605 -196746927 + MIR SINE MIR 128 189 -73 993 123 54 74 chr5 6339312 6339515 -196746017 - MER20 DNA MER1_type -5 214 16 2260 103 3 7 chr5 6340839 6341141 -196744391 + AluSg SINE Alu 1 301 -9 326 296 74 81 chr5 6341295 6341974 -196743558 + L1ME4a LINE L1 5405 6078 -43 910 286 84 23 chr5 6342338 6342834 -196742698 + L2 LINE L2 2723 3253 -60 1540 53 5 0 chr5 6342975 6343165 -196742367 + AluY SINE Alu 116 306 -5 1510 180 92 30 chr5 6343397 6343797 -196741735 - MER69 DNA AcHobo -13 2513 2089 586 274 95 21 chr5 6344617 6345144 -196740388 - L1M4c LINE L1 -4069 2577 1926 1836 154 4 4 chr5 6345149 6345429 -196740103 - AluJb SINE Alu -19 293 14 1916 139 17 46 chr5 6345429 6345774 -196739758 - THE1B LTR MaLR 0 364 30 6684 205 25 100 chr5 6345810 6347859 -196737673 - L1M4c LINE L1 -4712 1934 5 504 32 0 0 chr5 6348070 6348132 -196737400 + (TG)n Simple_repeat Simple_repeat 1 62 0 600 263 53 13 chr5 6348196 6348348 -196737184 + MER5A DNA MER1_type 32 189 0 571 294 82 77 chr5 6348788 6349582 -196735950 - L1M4 LINE L1 -1322 4824 4027 23 33 0 0 chr5 6349752 6349782 -196735750 + AT_rich Low_complexity Low_complexity 1 30 0 557 280 116 57 chr5 6349965 6350543 -196734989 + L1MC4a LINE L1 5293 5904 -1904 428 279 38 25 chr5 6350933 6351091 -196734441 - LTR67 LTR ERVL -369 188 29 2282 112 0 0 chr5 6351348 6351643 -196733889 - AluSx SINE Alu -17 295 1 212 289 134 35 chr5 6351840 6351982 -196733550 - MIR3 SINE MIR -23 185 30 305 266 164 83 chr5 6352303 6352533 -196732999 + L2 LINE L2 2694 2904 -409 2512 195 74 55 chr5 6352533 6353076 -196732456 - MLT2B3 LTR ERVL 0 554 2 305 266 164 83 chr5 6353076 6353236 -196732296 + L2 LINE L2 2904 3116 -197 375 188 83 21 chr5 6355016 6355112 -196730420 + LTR16A1 LTR ERVL 5 106 -351 1956 158 78 45 chr5 6355157 6355375 -196730157 - MLT1B LTR MaLR -4 386 150 2243 115 3 0 chr5 6355375 6355680 -196729852 - AluSx SINE Alu -2 310 5 1956 158 78 45 chr5 6355680 6355835 -196729697 - MLT1B LTR MaLR -240 150 1 342 0 0 0 chr5 6355846 6355884 -196729648 + (T)n Simple_repeat Simple_repeat 1 38 0 2233 203 65 15 chr5 6356411 6356889 -196728643 + MLT1D LTR MaLR 1 502 -3 1156 199 5 23 chr5 6357159 6357380 -196728152 - MER58A DNA MER1_type -2 222 6 299 180 66 0 chr5 6358944 6359005 -196726527 + L1MA9 LINE L1 6243 6307 -5 24 53 0 0 chr5 6359307 6359345 -196726187 + AT_rich Low_complexity Low_complexity 1 38 0 1258 144 0 33 chr5 6359795 6360010 -196725522 + L1MA9 LINE L1 6100 6307 -5 330 293 14 21 chr5 6360456 6360596 -196724936 + GA-rich Low_complexity Low_complexity 3 141 0 253 286 0 0 chr5 6360774 6360851 -196724681 - L2 LINE L2 -2 3311 3235 238 246 15 0 chr5 6361632 6361697 -196723835 + L1MB4 LINE L1 6115 6180 0 2896 138 20 35 chr5 6362958 6363430 -196722102 + MER31A LTR ERV1 1 467 -18 1453 165 12 92 chr5 6363430 6363758 -196721774 - AluJo SINE Alu -10 302 1 2896 138 20 35 chr5 6363758 6363777 -196721755 + MER31A LTR ERV1 467 485 0 485 92 41 0 chr5 6363781 6363879 -196721653 + (TA)n Simple_repeat Simple_repeat 1 102 0 275 227 53 0 chr5 6363884 6363959 -196721573 + 7SK RNA RNA 15 93 -100 1715 241 165 44 chr5 6364834 6365461 -196720071 - L1ME3A LINE L1 -5 6165 5615 5344 78 0 0 chr5 6365461 6366124 -196719408 - L1PA8 LINE L1 -7 6165 5503 1715 241 165 44 chr5 6366124 6366765 -196718767 - L1ME3A LINE L1 -555 5615 4742 22 0 0 0 chr5 6366961 6366983 -196718549 + AT_rich Low_complexity Low_complexity 1 22 0 1814 157 17 0 chr5 6366989 6367114 -196718418 + AluJb SINE Alu 4 125 -187 2220 101 3 3 chr5 6367114 6367410 -196718122 + AluSc SINE Alu 1 296 -13 1814 157 17 0 chr5 6367410 6367571 -196717961 + AluJb SINE Alu 125 295 -17 2011 135 3 3 chr5 6368808 6369105 -196716427 - AluSq SINE Alu -15 298 2 586 267 85 6 chr5 6369715 6369891 -196715641 - MIR SINE MIR -55 207 18 20531 25 14 1 chr5 6370555 6373597 -196711935 + L1PA3 LINE L1 3100 6152 -3 247 293 49 12 chr5 6373783 6373865 -196711667 - MIR SINE MIR -91 117 33 1061 289 73 35 chr5 6374517 6375009 -196710523 + MLT1J LTR MaLR 1 511 0 2334 79 0 0 chr5 6376217 6376527 -196709005 - AluSc SINE Alu 0 310 1 891 193 37 6 chr5 6376530 6376691 -196708841 - FRAM SINE Alu -16 160 1 578 127 0 32 chr5 6377724 6377850 -196707682 + (TA)n Simple_repeat Simple_repeat 1 122 0 3218 110 0 5 chr5 6377909 6378266 -196707266 - L1PB1 LINE L1 -2 6149 5793 333 0 0 0 chr5 6378266 6378303 -196707229 + (TG)n Simple_repeat Simple_repeat 2 38 0 3218 110 0 5 chr5 6378303 6378389 -196707143 - L1PB1 LINE L1 -358 5793 5708 471 224 22 48 chr5 6378641 6378786 -196706746 + MIR SINE MIR 31 172 -36 244 203 0 127 chr5 6379078 6379108 -196706424 + MER46C DNA MER2_type 204 236 -102 1253 247 108 44 chr5 6379108 6379626 -196705906 - MLT1H1 LTR MaLR -4 551 1 244 203 0 127 chr5 6379626 6379674 -196705858 + MER46C DNA MER2_type 236 272 -66 1789 203 109 106 chr5 6379814 6379961 -196705571 - Charlie2 DNA MER1_type -33 2829 2684 8080 29 10 0 chr5 6379961 6381110 -196704422 - L1PA4 LINE L1 -3 6152 5000 1789 203 109 106 chr5 6381110 6381915 -196703617 - Charlie2 DNA MER1_type -178 2684 1874 198 250 21 0 chr5 6382390 6382438 -196703094 + L2 LINE L2 3265 3313 0 635 290 43 90 chr5 6382827 6383323 -196702209 + MLT1J2 LTR MaLR 1 442 -8 21 71 0 0 chr5 6383392 6383434 -196702098 + AT_rich Low_complexity Low_complexity 1 42 0 1741 184 10 0 chr5 6384473 6384772 -196700760 - AluJo SINE Alu -10 302 1 424 224 129 99 chr5 6384915 6385108 -196700424 - MLT1I LTR MaLR -23 386 181 1334 167 139 0 chr5 6385108 6385366 -196700166 - AluJb SINE Alu -18 294 1 424 224 129 99 chr5 6385366 6385444 -196700088 - MLT1I LTR MaLR -228 181 107 562 279 113 26 chr5 6387412 6387677 -196697855 - L2 LINE L2 -21 3292 3005 444 195 234 8 chr5 6387685 6387813 -196697719 + LTR52 LTR ERVL 1 157 -264 717 255 13 0 chr5 6387837 6387994 -196697538 + MER45A DNA AcHobo 19 177 -1 267 247 27 27 chr5 6388002 6388075 -196697457 + MER115 DNA AcHobo 477 549 -144 509 212 0 0 chr5 6388122 6388221 -196697311 - L1MD2 LINE L1 -21 6338 6240 407 221 110 8 chr5 6388224 6388351 -196697181 + Zaphod DNA AcHobo 3882 4021 -10 25 0 0 0 chr5 6388386 6388411 -196697121 + AT_rich Low_complexity Low_complexity 1 25 0 797 295 172 12 chr5 6388415 6388839 -196696693 + L2 LINE L2 1811 2302 -1012 23 0 0 0 chr5 6389155 6389178 -196696354 + AT_rich Low_complexity Low_complexity 1 23 0 198 333 20 0 chr5 6389900 6389951 -196695581 + MER5A DNA MER1_type 73 124 -65 1521 174 30 0 chr5 6390146 6390411 -196695121 - MER2 DNA MER2_type -72 273 1 453 293 135 83 chr5 6390451 6390781 -196694751 - L1ME4a LINE L1 -195 5926 5551 2365 61 0 0 chr5 6390781 6391106 -196694426 - AluY SINE Alu 0 325 1 453 293 135 83 chr5 6391106 6391361 -196694171 - L1ME4a LINE L1 -570 5551 5310 3112 74 13 2 chr5 6391363 6391756 -196693776 - L1PA13 LINE L1 0 6163 5767 1388 189 79 4 chr5 6392231 6392496 -196693036 + AluJb SINE Alu 9 293 -19 475 231 106 60 chr5 6393023 6393305 -196692227 + L1MEd LINE L1 31 325 -5794 391 283 167 24 chr5 6393562 6393855 -196691677 + L1MEd LINE L1 635 969 -5150 293 308 97 44 chr5 6394306 6394533 -196690999 + MLT1J LTR MaLR 143 381 -130 2007 129 57 48 chr5 6395527 6395899 -196689633 + THE1C LTR MaLR 1 375 0 509 279 191 38 chr5 6396307 6396647 -196688885 + MLT1J LTR MaLR 7 398 -113 624 62 0 0 chr5 6396658 6396739 -196688793 + (TTCTCC)n Simple_repeat Simple_repeat 1 81 0 396 0 0 0 chr5 6396747 6396791 -196688741 + (CA)n Simple_repeat Simple_repeat 2 45 0 497 278 32 27 chr5 6396860 6397047 -196688485 + MIR3 SINE MIR 8 195 -13 25 0 0 0 chr5 6397337 6397362 -196688170 + AT_rich Low_complexity Low_complexity 1 25 0 882 214 27 16 chr5 6398198 6398385 -196687147 + MER5A DNA MER1_type 1 189 0 554 157 90 2 chr5 6398393 6398565 -196686967 + MER58A DNA MER1_type 1 221 -3 668 310 21 8 chr5 6398590 6398832 -196686700 + MIR SINE MIR 15 259 -3 356 296 29 52 chr5 6399768 6399940 -196685592 - MER5B DNA MER1_type 0 178 22 841 368 124 7 chr5 6400354 6401169 -196684363 + L2 LINE L2 924 1833 -1481 386 289 100 54 chr5 6401512 6402613 -196682919 - L1ME LINE L1 -547 5617 4442 394 266 90 34 chr5 6402848 6403081 -196682451 - L1ME LINE L1 -2085 4061 3816 714 203 8 8 chr5 6403162 6403295 -196682237 + MLT1A1 LTR MaLR 233 365 0 8304 198 57 31 chr5 6403295 6404987 -196680545 + MLT1A1-int LTR MaLR 1 1735 0 1651 165 18 107 chr5 6404987 6405388 -196680144 + MLT1A1 LTR MaLR 1 365 0 288 368 56 52 chr5 6405514 6405783 -196679749 + L2 LINE L2 2968 3237 -35 611 275 58 116 chr5 6405925 6406151 -196679381 - MLT1J LTR MaLR -3 508 315 2202 123 0 0 chr5 6406151 6406452 -196679080 - AluSx SINE Alu -11 301 1 611 275 58 116 chr5 6406452 6406639 -196678893 - MLT1J LTR MaLR -196 315 119 198 320 0 0 chr5 6409318 6409368 -196676164 - MIR SINE MIR -72 136 87 180 0 0 0 chr5 6411555 6411575 -196673957 + (GGA)n Simple_repeat Simple_repeat 1 20 0 336 285 86 106 chr5 6412256 6412350 -196673182 - L1M2 LINE L1 -5520 1329 1235 216 0 0 0 chr5 6412350 6412374 -196673158 + (CCGCG)n Simple_repeat Simple_repeat 1 24 0 336 285 86 106 chr5 6412374 6412721 -196672811 - L1M2 LINE L1 -5614 1235 897 180 0 0 0 chr5 6417023 6417043 -196668489 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2204 95 3 29 chr5 6417270 6417585 -196667947 - AluY SINE Alu -4 307 1 351 233 38 60 chr5 6417637 6417770 -196667762 + L2 LINE L2 3184 3313 0 475 204 0 0 chr5 6418112 6418200 -196667332 + Tigger4(Zombi) DNA MER2_type 1 88 -2643 * 656 122 2 2 chr5 6418189 6418296 -196667236 + Tigger4(Zombi) DNA MER2_type 2625 2731 0 1833 202 26 19 chr5 6418531 6418952 -196666580 + L1MB8 LINE L1 5754 6177 -1 2301 116 0 0 chr5 6421261 6421563 -196663969 - AluSx SINE Alu -10 302 1 995 82 48 0 chr5 6423170 6423316 -196662216 + MER41A LTR ERV1 402 554 0 2224 85 0 69 chr5 6425305 6425623 -196659909 + AluSx SINE Alu 1 296 -16 188 402 51 8 chr5 6425855 6425972 -196659560 - L3b LINE CR1 -7 1576 1455 205 400 9 0 chr5 6426083 6426193 -196659339 - L2 LINE L2 -17 3255 3145 207 185 0 108 chr5 6427048 6427113 -196658419 - MER5B DNA MER1_type -109 69 12 23 54 0 0 chr5 6427394 6427431 -196658101 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr5 6428353 6428382 -196657150 + AT_rich Low_complexity Low_complexity 1 29 0 418 271 133 18 chr5 6429088 6429254 -196656278 - MLT1H1 LTR MaLR 0 555 371 385 268 75 10 chr5 6429291 6429501 -196656031 - MLT1G1 LTR MaLR -374 181 2 698 256 81 20 chr5 6430006 6430252 -196655280 + MIR SINE MIR 2 262 0 241 281 91 18 chr5 6430598 6430934 -196654598 + LTR33 LTR ERVL 83 512 -9 314 128 21 0 chr5 6432277 6432324 -196653208 - MLT1C LTR MaLR -77 390 343 1071 246 18 0 chr5 6432606 6432826 -196652706 - MER58A DNA MER1_type 0 224 1 429 145 0 0 chr5 6432829 6432898 -196652634 - MER116 DNA Mariner -6 74 6 1364 225 61 48 chr5 6433246 6433589 -196651943 - MLT1C LTR MaLR 0 467 115 1958 145 148 19 chr5 6433589 6433968 -196651564 - MSTA LTR MaLR 0 428 1 1364 225 61 48 chr5 6433968 6434082 -196651450 - MLT1C LTR MaLR -352 115 4 2117 112 20 3 chr5 6435320 6435616 -196649916 - AluSq SINE Alu -8 305 5 2225 123 0 0 chr5 6436483 6436792 -196648740 - AluSx SINE Alu -3 309 1 2215 226 29 6 chr5 6436799 6437320 -196648212 - L1MC3 LINE L1 -19 7766 7234 365 303 76 0 chr5 6437587 6437732 -196647800 + L2 LINE L2 3156 3311 -2 21 0 0 0 chr5 6440307 6440328 -196645204 + AT_rich Low_complexity Low_complexity 1 21 0 470 215 54 0 chr5 6440459 6440552 -196644980 - MER5A DNA MER1_type -85 104 7 260 172 46 0 chr5 6442073 6442160 -196643372 + (TG)n Simple_repeat Simple_repeat 1 91 0 261 235 286 25 chr5 6442195 6442314 -196643218 + L2 LINE L2 3123 3272 0 1767 197 33 0 chr5 6443012 6443342 -196642190 + MER47B DNA MER2_type 2 342 -76 2090 161 24 0 chr5 6443600 6443936 -196641596 - MER2 DNA MER2_type 0 344 1 2081 193 19 61 chr5 6443977 6444500 -196641032 + MLT1D LTR MaLR 1 501 -4 252 0 0 0 chr5 6445294 6445322 -196640210 + (TA)n Simple_repeat Simple_repeat 2 29 0 266 359 36 36 chr5 6445862 6446057 -196639475 + MIR SINE MIR 20 214 -48 981 143 65 32 chr5 6446539 6446755 -196638777 - L1MA8 LINE L1 -1 6290 6068 229 224 45 15 chr5 6447973 6448040 -196637492 - MER116 DNA Mariner -6 74 6 209 387 0 0 chr5 6448076 6448151 -196637381 + L2 LINE L2 3239 3313 0 459 308 137 12 chr5 6448259 6448587 -196636945 + L2 LINE L2 2945 3313 0 2342 84 0 0 chr5 6448802 6449117 -196636415 + AluSq SINE Alu 1 315 0 227 287 77 107 chr5 6449507 6449807 -196635725 - L2 LINE L2 -49 3223 2933 2540 71 0 0 chr5 6450346 6450656 -196634876 - AluY SINE Alu -1 310 1 21 0 0 0 chr5 6453019 6453040 -196632492 + AT_rich Low_complexity Low_complexity 1 21 0 244 379 107 22 chr5 6453641 6454005 -196631527 + L2 LINE L2 2919 3313 0 2409 85 7 0 chr5 6454140 6454445 -196631087 - AluSg SINE Alu -3 307 1 21 0 0 0 chr5 6454743 6454764 -196630768 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr5 6456254 6456277 -196629255 + AT_rich Low_complexity Low_complexity 1 23 0 204 211 0 0 chr5 6456969 6457007 -196628525 + (CA)n Simple_repeat Simple_repeat 1 38 0 521 209 0 0 chr5 6457658 6457768 -196627764 + MER53 DNA DNA 71 180 -9 183 275 43 29 chr5 6458826 6458895 -196626637 - L2 LINE L2 -84 3229 3160 660 247 60 47 chr5 6460105 6460340 -196625192 - MER74A LTR ERVL -310 248 11 672 222 60 0 chr5 6460629 6460796 -196624736 + MIR SINE MIR 64 240 -22 2095 118 3 7 chr5 6462034 6462321 -196623211 + AluSx SINE Alu 1 286 -26 426 231 110 99 chr5 6462350 6462532 -196623000 - L2 LINE L2 -22 3291 3108 305 243 87 0 chr5 6462783 6462886 -196622646 + L2 LINE L2 3196 3307 -6 21 0 0 0 chr5 6463381 6463402 -196622130 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr5 6464195 6464216 -196621316 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr5 6464345 6464376 -196621156 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr5 6464878 6464912 -196620620 + AT_rich Low_complexity Low_complexity 1 34 0 378 238 24 0 chr5 6465051 6465177 -196620355 + (TA)n Simple_repeat Simple_repeat 2 130 0 3371 152 9 0 chr5 6465184 6465717 -196619815 - L1MC1 LINE L1 -8 6325 5788 274 309 21 0 chr5 6465994 6466091 -196619441 + MIR SINE MIR 56 154 -108 349 310 76 38 chr5 6466152 6466336 -196619196 + L2 LINE L2 3123 3313 0 1559 115 17 0 chr5 6466944 6467178 -196618354 - L1MC1 LINE L1 -149 6184 5947 24 0 0 0 chr5 6467905 6467929 -196617603 + AT_rich Low_complexity Low_complexity 1 24 0 704 241 32 27 chr5 6470928 6471148 -196614384 + MIR SINE MIR 31 251 -11 523 319 103 67 chr5 6471294 6471904 -196613628 - HAL1 LINE L1 -760 1747 1160 219 69 0 0 chr5 6471904 6471933 -196613599 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3037 115 2 9 chr5 6471933 6472367 -196613165 - L1PA8 LINE L1 -10 6162 5732 523 319 103 67 chr5 6472367 6472588 -196612944 - HAL1 LINE L1 -1346 1161 885 554 178 9 146 chr5 6473238 6473457 -196612075 - MER53 DNA DNA 0 189 1 243 314 11 38 chr5 6475064 6475249 -196610283 + GA-rich Low_complexity Low_complexity 1 180 0 770 263 52 0 chr5 6475629 6475823 -196609709 - MER63A DNA MER1_type -6 204 1 2233 118 3 10 chr5 6477133 6477446 -196608086 + AluSx SINE Alu 1 311 -1 860 224 29 24 chr5 6478150 6478360 -196607172 + MER20 DNA MER1_type 1 211 -8 210 211 307 26 chr5 6478751 6478865 -196606667 - MIR SINE MIR 0 262 117 873 192 12 35 chr5 6478964 6479136 -196606396 - AluJo SINE Alu -2 310 143 1714 143 105 46 chr5 6479139 6479490 -196606042 - THE1C LTR MaLR -3 372 1 9526 135 40 44 chr5 6479490 6481072 -196604460 - THE1C-int LTR MaLR -1 1579 3 1224 208 94 29 chr5 6481091 6481433 -196604099 - THE1C LTR MaLR -9 366 3 755 185 0 55 chr5 6481434 6481580 -196603952 - AluJo SINE Alu -164 148 11 386 174 130 11 chr5 6481925 6482017 -196603515 + L1MC/D LINE L1 5375 5477 -2331 248 356 20 0 chr5 6482569 6482670 -196602862 - L2 LINE L2 -17 3255 3153 1906 125 45 3 chr5 6483152 6483440 -196602092 + AluSx SINE Alu 4 303 -9 186 189 0 0 chr5 6484756 6484793 -196600739 + CT-rich Low_complexity Low_complexity 3 39 0 22 0 0 0 chr5 6485238 6485260 -196600272 + AT_rich Low_complexity Low_complexity 1 22 0 266 91 0 0 chr5 6485260 6485304 -196600228 - L1PA3 LINE L1 0 6155 6112 292 293 97 27 chr5 6485355 6485655 -196599877 + L1ME4a LINE L1 5743 6063 -58 1042 17 0 0 chr5 6486264 6486380 -196599152 + L1PA4 LINE L1 6034 6149 -6 796 320 33 27 chr5 6487475 6487812 -196597720 - MLT1I LTR MaLR 0 409 71 225 294 209 35 chr5 6488310 6488511 -196597021 - MIR SINE MIR -12 250 15 295 304 36 9 chr5 6488754 6488866 -196596666 + MIR SINE MIR 34 148 -114 2210 96 0 0 chr5 6489075 6489385 -196596147 + AluSg SINE Alu 1 310 0 272 158 129 109 chr5 6490339 6490440 -196595092 + MIR SINE MIR 84 186 -76 2242 105 0 3 chr5 6490970 6491265 -196594267 + AluSg SINE Alu 1 294 -16 1575 39 0 0 chr5 6492003 6492181 -196593351 - L1PA4 LINE L1 -3 6152 5975 1087 224 72 36 chr5 6492620 6492951 -196592581 + MER2 DNA MER2_type 2 344 0 282 228 81 87 chr5 6493143 6493292 -196592240 + MER5A DNA MER1_type 18 165 -24 * 301 284 97 30 chr5 6493173 6493307 -196592225 - MER5A DNA MER1_type -29 160 18 23 33 0 0 chr5 6493848 6493878 -196591654 + AT_rich Low_complexity Low_complexity 1 30 0 1119 203 14 27 chr5 6494174 6494396 -196591136 + MER20 DNA MER1_type 1 219 0 5580 114 10 2 chr5 6495387 6496212 -196589320 - L1PA13 LINE L1 0 6163 5333 24 85 0 0 chr5 6497870 6497929 -196587603 + AT_rich Low_complexity Low_complexity 1 59 0 23 33 0 0 chr5 6498508 6498538 -196586994 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr5 6498569 6498594 -196586938 + AT_rich Low_complexity Low_complexity 1 25 0 1751 233 99 42 chr5 6498632 6499185 -196586347 - MLT1E LTR MaLR -2 591 7 2631 46 0 0 chr5 6500175 6500481 -196585051 + AluY SINE Alu 1 306 -5 202 306 35 12 chr5 6500715 6500800 -196584732 - MIR3 SINE MIR -19 189 103 2193 95 0 3 chr5 6502826 6503156 -196582376 + AluY SINE Alu 1 329 0 3344 203 23 5 chr5 6504605 6505225 -196580307 + MER82 DNA MER2_type 23 653 0 4838 97 14 0 chr5 6508792 6509421 -196576111 - L1PA11 LINE L1 0 6174 5537 262 221 23 107 chr5 6509665 6509796 -196575736 + L3 LINE CR1 769 888 -689 181 242 0 0 chr5 6509956 6509989 -196575543 - MIR SINE MIR -24 238 206 25 75 0 0 chr5 6511571 6511624 -196573908 + AT_rich Low_complexity Low_complexity 1 53 0 2481 62 0 0 chr5 6512706 6512997 -196572535 - AluY SINE Alu -20 291 1 3645 116 0 15 chr5 6513673 6514199 -196571333 + L1PB1 LINE L1 5634 6151 0 26 30 0 0 chr5 6514199 6514232 -196571300 + AT_rich Low_complexity Low_complexity 1 33 0 483 267 45 11 chr5 6514699 6514875 -196570657 + L1MA9 LINE L1 6101 6282 -30 204 234 47 16 chr5 6514994 6515058 -196570474 + CT-rich Low_complexity Low_complexity 1 66 0 1697 238 118 19 chr5 6515812 6516295 -196569237 - MER77 LTR ERV1 -21 584 54 2267 118 16 0 chr5 6520734 6521040 -196564492 + AluSx SINE Alu 1 311 -1 594 249 62 8 chr5 6522176 6522363 -196563169 - MIR SINE MIR -19 243 42 857 209 73 0 chr5 6522521 6522712 -196562820 - MER58A DNA MER1_type 0 224 20 27 29 0 0 chr5 6523927 6523961 -196561571 + AT_rich Low_complexity Low_complexity 1 34 0 230 289 106 22 chr5 6524101 6524281 -196561251 - L1ME LINE L1 -199 5922 5728 26 30 0 0 chr5 6524657 6524690 -196560842 + AT_rich Low_complexity Low_complexity 1 33 0 214 206 29 0 chr5 6524753 6524821 -196560711 + GA-rich Low_complexity Low_complexity 1 70 0 2789 283 73 44 chr5 6527329 6529038 -196556494 + L2 LINE L2 1559 3310 -3 280 288 81 119 chr5 6529227 6529512 -196556020 + L2 LINE L2 2998 3271 -1 24 32 0 0 chr5 6529628 6529659 -196555873 + AT_rich Low_complexity Low_complexity 1 31 0 423 56 0 0 chr5 6530200 6530254 -196555278 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 308 164 15 0 chr5 6530258 6530325 -196555207 + (TA)n Simple_repeat Simple_repeat 1 68 0 1960 136 4 0 chr5 6531057 6531336 -196554196 - AluSg SINE Alu -30 280 1 2136 62 44 0 chr5 6531887 6532221 -196553311 - AluY SINE Alu 0 346 1 444 237 142 24 chr5 6532317 6532486 -196553046 - MIR SINE MIR -11 251 63 360 254 53 95 chr5 6532999 6533188 -196552344 - L2 LINE L2 -25 3288 3108 935 305 63 50 chr5 6533226 6533889 -196551643 - L2 LINE L2 -433 2881 2210 373 313 78 28 chr5 6536433 6536859 -196548673 + L1ME LINE L1 5218 5664 -502 2101 128 0 13 chr5 6537338 6537643 -196547889 - AluSg SINE Alu -8 302 2 206 278 0 0 chr5 6537949 6538003 -196547529 + MIR SINE MIR 85 138 -124 1417 262 16 26 chr5 6539000 6539507 -196546025 + L1 LINE L1 2641 3142 -3004 1442 214 16 46 chr5 6539943 6540099 -196545433 + MLT1A1 LTR MaLR 1 160 -205 2464 57 0 7 chr5 6540099 6540400 -196545132 + AluY SINE Alu 1 299 -12 1442 214 16 46 chr5 6540400 6540613 -196544919 + MLT1A1 LTR MaLR 160 359 -6 848 200 56 37 chr5 6541457 6541672 -196543860 - MER20 DNA MER1_type 0 219 1 22 0 0 0 chr5 6542413 6542435 -196543097 + AT_rich Low_complexity Low_complexity 1 22 0 496 314 101 5 chr5 6543428 6543635 -196541897 - MIR SINE MIR -11 251 25 1879 167 5 32 chr5 6545470 6545841 -196539691 + MER46B DNA MER2_type 1 236 0 2851 3 0 0 chr5 6546408 6546714 -196538818 - AluYa5 SINE Alu -5 306 1 21 0 0 0 chr5 6547373 6547394 -196538138 + AT_rich Low_complexity Low_complexity 1 21 0 1851 130 3 7 chr5 6547526 6547819 -196537713 - L1PA8A LINE L1 0 6131 5840 183 265 120 34 chr5 6548653 6548770 -196536762 - MIR SINE MIR -71 191 65 358 280 19 28 chr5 6549258 6549365 -196536167 + MIR SINE MIR 36 141 -67 661 263 122 10 chr5 6549594 6549799 -196535733 + MIR SINE MIR 13 240 -22 559 234 3 6 chr5 6550156 6550511 -196535021 + (TGG)n Simple_repeat Simple_repeat 1 353 0 2236 285 63 34 chr5 6550611 6551982 -196533550 + L2 LINE L2 1907 3310 -3 280 288 81 119 chr5 6552171 6552456 -196533076 + L2 LINE L2 2998 3271 -1 24 32 0 0 chr5 6552572 6552603 -196532929 + AT_rich Low_complexity Low_complexity 1 31 0 423 56 0 0 chr5 6553145 6553199 -196532333 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 299 167 15 0 chr5 6553204 6553270 -196532262 + (TA)n Simple_repeat Simple_repeat 2 68 0 1960 136 4 0 chr5 6554002 6554281 -196531251 - AluSg SINE Alu -30 280 1 2136 62 44 0 chr5 6554833 6555167 -196530365 - AluY SINE Alu 0 346 1 444 237 142 24 chr5 6555263 6555432 -196530100 - MIR SINE MIR -11 251 63 360 254 53 95 chr5 6555945 6556134 -196529398 - L2 LINE L2 -25 3288 3108 935 305 63 50 chr5 6556172 6556835 -196528697 - L2 LINE L2 -433 2881 2210 373 313 78 28 chr5 6559378 6559804 -196525728 + L1ME LINE L1 5218 5664 -502 2031 79 4 8 chr5 6560283 6560550 -196524982 - AluYa5 SINE Alu -8 303 38 24 32 0 0 chr5 6560646 6560677 -196524855 + AT_rich Low_complexity Low_complexity 1 31 0 216 316 61 10 chr5 6562167 6562265 -196523267 + MIR SINE MIR 32 134 -128 339 333 23 0 chr5 6563199 6563328 -196522204 + MIR SINE MIR 39 170 -92 2017 121 7 7 chr5 6563731 6564020 -196521512 - AluSx SINE Alu -23 289 1 267 357 25 19 chr5 6565350 6565507 -196520025 + MIR SINE MIR 90 247 -15 516 229 52 104 chr5 6566754 6566985 -196518547 - MER20 DNA MER1_type 0 219 1 267 357 25 19 chr5 6568742 6568899 -196516633 - MIR SINE MIR -15 247 90 2122 120 3 0 chr5 6570233 6570517 -196515015 + AluSx SINE Alu 1 317 0 268 31 0 0 chr5 6570517 6570549 -196514983 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 339 333 23 0 chr5 6570920 6571049 -196514483 - MIR SINE MIR -92 170 39 216 316 61 10 chr5 6572044 6572142 -196513390 - MIR SINE MIR -128 134 32 24 32 0 0 chr5 6573632 6573663 -196511869 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr5 6573866 6573901 -196511631 + AT_rich Low_complexity Low_complexity 1 35 0 2954 72 0 5 chr5 6573919 6574308 -196511224 - L1PA8 LINE L1 -2 6170 5784 2560 175 24 42 chr5 6574609 6575186 -196510346 - L1MB7 LINE L1 0 6184 5618 647 206 217 0 chr5 6576748 6576923 -196508609 - MIR SINE MIR -5 257 45 205 323 0 32 chr5 6576957 6577081 -196508451 + (TATG)n Simple_repeat Simple_repeat 4 123 0 * 232 281 0 0 chr5 6577018 6577082 -196508450 + (TG)n Simple_repeat Simple_repeat 1 64 0 1270 257 54 28 chr5 6577339 6577873 -196507659 - MER74B LTR ERVL -6 616 69 288 0 0 0 chr5 6577977 6578009 -196507523 + (TG)n Simple_repeat Simple_repeat 1 32 0 28 29 0 0 chr5 6579198 6579233 -196506299 + AT_rich Low_complexity Low_complexity 1 35 0 191 309 73 109 chr5 6579695 6580025 -196505507 - L2 LINE L2 -5 3267 2950 359 241 68 2 chr5 6580259 6580467 -196505065 - L1ME3A LINE L1 -285 5885 5647 444 254 273 5 chr5 6580613 6580818 -196504714 - MIR SINE MIR -1 261 2 240 244 98 12 chr5 6581514 6581596 -196503936 - L2 LINE L2 -36 3277 3189 294 284 77 0 chr5 6581668 6581823 -196503709 + HERVL74 LTR ERVL 1768 1934 -3751 243 159 0 0 chr5 6581856 6581900 -196503632 - L1MA9 LINE L1 -39 6273 6230 286 322 103 21 chr5 6582005 6582247 -196503285 - L2 LINE L2 -164 3149 2888 614 315 136 33 chr5 6582289 6582927 -196502605 - L2 LINE L2 -430 2884 2181 216 286 26 26 chr5 6583294 6583371 -196502161 + MIR SINE MIR 107 183 -79 2483 80 0 0 chr5 6585331 6585642 -196499890 - AluY SINE Alu 0 311 1 207 100 0 0 chr5 6585763 6585793 -196499739 + (T)n Simple_repeat Simple_repeat 1 30 0 202 279 58 58 chr5 6587204 6587308 -196498224 + MIR3 SINE MIR 105 208 0 2364 98 0 16 chr5 6588160 6588467 -196497065 + AluSg SINE Alu 1 302 -8 200 211 0 0 chr5 6589479 6589517 -196496015 + (TATG)n Simple_repeat Simple_repeat 3 40 0 180 0 0 0 chr5 6589517 6589537 -196495995 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 1378 22 0 22 chr5 6589537 6589721 -196495811 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 570 187 187 28 chr5 6589724 6589906 -196495626 + MER20 DNA MER1_type 1 211 -8 1703 199 0 13 chr5 6591929 6592236 -196493296 - AluJo SINE Alu -9 303 1 468 0 0 0 chr5 6592267 6592319 -196493213 + (CA)n Simple_repeat Simple_repeat 1 52 0 917 260 22 30 chr5 6592447 6592910 -196492622 - MLT1H1 LTR MaLR -34 521 4 197 379 97 0 chr5 6594943 6595046 -196490486 - L2 LINE L2 0 3272 3160 1511 232 55 110 chr5 6595188 6596404 -196489128 - L1MC5 LINE L1 -64 7897 6749 338 325 118 19 chr5 6596432 6596644 -196488888 - L1MC4a LINE L1 -1162 6646 6414 1051 314 26 30 chr5 6596996 6597563 -196487969 - L1MC4a LINE L1 -1846 5962 5398 187 341 110 0 chr5 6597566 6597648 -196487884 - L2 LINE L2 -9 3263 3173 229 186 0 0 chr5 6598510 6598553 -196486979 - MER81 DNA DNA -1 113 71 1630 233 29 16 chr5 6598614 6599060 -196486472 - MLT1C LTR MaLR 0 467 16 315 0 0 0 chr5 6599604 6599639 -196485893 + (CA)n Simple_repeat Simple_repeat 1 35 0 25 51 0 0 chr5 6603030 6603069 -196482463 + AT_rich Low_complexity Low_complexity 1 39 0 604 305 40 22 chr5 6604162 6604388 -196481144 - L2 LINE L2 -8 3305 3076 1270 242 49 20 chr5 6604511 6605003 -196480529 + L1ME1 LINE L1 4743 5248 -898 227 154 218 26 chr5 6605054 6605132 -196480400 + L1ME1 LINE L1 5254 5346 -828 2101 243 40 29 chr5 6605137 6605862 -196479670 + L1ME1 LINE L1 5430 6162 -4 2132 177 57 7 chr5 6606157 6606563 -196478969 - MSTB LTR MaLR 0 426 1 715 202 50 15 chr5 6606958 6607156 -196478376 + MER3 DNA MER1_type 1 205 -4 260 373 40 17 chr5 6607283 6607460 -196478072 + MIR3 SINE MIR 21 201 -7 2396 77 0 0 chr5 6607574 6607872 -196477660 + AluY SINE Alu 1 298 -13 287 293 99 5 chr5 6608205 6608417 -196477115 - MLT1L LTR MaLR -17 598 367 1500 194 89 23 chr5 6608648 6609039 -196476493 - MER96B DNA MER1_type 0 417 1 2228 97 3 0 chr5 6612946 6613244 -196472288 - AluSq SINE Alu -14 299 1 313 333 54 42 chr5 6614894 6615098 -196470434 - MIR SINE MIR -48 214 8 226 324 103 80 chr5 6615605 6615917 -196469615 - L2 LINE L2 0 3272 2954 432 338 118 12 chr5 6618487 6618886 -196466646 + L2 LINE L2 2152 2592 -722 441 161 136 0 chr5 6619080 6619210 -196466322 + MER58B DNA MER1_type 181 337 -4 413 315 170 16 chr5 6619211 6619672 -196465860 + L2 LINE L2 2752 3285 -28 1262 70 13 0 chr5 6620834 6621139 -196464393 + (TTTCC)n Simple_repeat Simple_repeat 1 490 0 1058 195 47 9 chr5 6621233 6621448 -196464084 - MER58A DNA MER1_type 0 224 2 958 170 0 0 chr5 6621625 6621766 -196463766 + AluJo SINE Alu 1 141 -171 338 108 15 0 chr5 6621783 6621848 -196463684 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 27 0 0 0 chr5 6621849 6621876 -196463656 + AT_rich Low_complexity Low_complexity 1 27 0 2400 227 6 52 chr5 6623213 6623842 -196461690 - MER77 LTR ERV1 0 605 6 289 160 266 11 chr5 6624100 6624194 -196461338 + MER33 DNA MER1_type 2 119 -205 1986 134 0 7 chr5 6624240 6624561 -196460971 - AluSx SINE Alu 0 319 1 321 254 0 0 chr5 6624574 6624645 -196460887 + MER33 DNA MER1_type 293 363 0 263 284 71 55 chr5 6624718 6624845 -196460687 + L2 LINE L2 3167 3295 -18 22 35 0 0 chr5 6627104 6627133 -196458399 + AT_rich Low_complexity Low_complexity 1 29 0 314 260 21 21 chr5 6627238 6627334 -196458198 - L1MC4 LINE L1 -1333 6709 6614 400 257 9 9 chr5 6627341 6627446 -196458086 - LTR28 LTR ERV1 0 1020 916 1051 249 114 79 chr5 6627495 6628253 -196457279 - LTR1B LTR ERV1 -37 983 1 398 237 45 13 chr5 6628253 6628409 -196457123 + (TA)n Simple_repeat Simple_repeat 1 161 0 364 278 295 0 chr5 6631267 6631440 -196454092 + MIR SINE MIR 1 224 -38 180 216 0 0 chr5 6632047 6632098 -196453434 + T-rich Low_complexity Low_complexity 1 51 0 280 0 50 0 chr5 6632492 6632532 -196453000 + (TA)n Simple_repeat Simple_repeat 1 42 0 399 73 0 0 chr5 6632946 6633001 -196452531 + (TG)n Simple_repeat Simple_repeat 1 55 0 259 207 0 35 chr5 6634541 6634599 -196450933 + CT-rich Low_complexity Low_complexity 3 58 0 26 50 0 0 chr5 6636317 6636357 -196449175 + AT_rich Low_complexity Low_complexity 1 40 0 785 275 42 21 chr5 6636656 6636896 -196448636 - MIR SINE MIR -10 252 8 456 155 10 10 chr5 6639299 6639396 -196446136 + MER53 DNA DNA 1 97 -92 196 275 0 0 chr5 6639436 6639476 -196446056 + L2 LINE L2 3256 3295 -18 225 338 104 19 chr5 6639503 6639657 -196445875 + MIR SINE MIR 77 243 -19 1310 197 29 65 chr5 6642394 6642779 -196442753 - MER93b LTR ERV1 -2 371 1 186 227 239 23 chr5 6643569 6643657 -196441875 + MER5A DNA MER1_type 40 146 -43 271 0 51 0 chr5 6643719 6643758 -196441774 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 2229 47 0 0 chr5 6643772 6644030 -196441502 - AluY SINE Alu -14 297 40 999 174 46 0 chr5 6644222 6644418 -196441114 - MER2 DNA MER2_type -135 210 6 244 281 31 0 chr5 6644630 6644694 -196440838 - L2 LINE L2 -14 3299 3234 634 222 119 0 chr5 6644732 6644908 -196440624 + MER58A DNA MER1_type 1 197 -27 223 315 44 66 chr5 6645271 6645387 -196440145 + MER5A DNA MER1_type 1 127 -62 2088 112 10 27 chr5 6645387 6645683 -196439849 - AluSq SINE Alu -22 291 1 223 315 44 66 chr5 6645683 6645745 -196439787 + MER5A DNA MER1_type 127 189 0 22 35 0 0 chr5 6647265 6647294 -196438238 + AT_rich Low_complexity Low_complexity 1 29 0 1452 168 27 8 chr5 6647380 6647642 -196437890 - AluSx SINE Alu -5 307 41 1841 114 4 15 chr5 6647642 6647914 -196437618 + AluSx SINE Alu 16 285 -27 231 242 21 74 chr5 6649115 6649210 -196436322 + MIR SINE MIR 103 192 -70 2329 70 0 0 chr5 6649811 6650116 -196435416 + AluY SINE Alu 1 305 0 2094 127 43 0 chr5 6650230 6650529 -196435003 + AluSx SINE Alu 1 312 0 198 303 30 0 chr5 6651175 6651241 -196434291 - MIR SINE MIR -87 121 54 225 310 141 49 chr5 6651402 6651586 -196433946 + MIR3 SINE MIR 3 203 -5 240 59 0 0 chr5 6651709 6651743 -196433789 + (ATGGTG)n Simple_repeat Simple_repeat 2 35 0 564 251 84 6 chr5 6652514 6652687 -196432845 - MIR SINE MIR -9 253 64 2091 132 24 32 chr5 6652854 6653232 -196432300 - THE1C LTR MaLR 0 375 1 1565 177 0 28 chr5 6653444 6653727 -196431805 - AluJb SINE Alu -16 296 22 1561 183 3 21 chr5 6654938 6655259 -196430273 - AluJb SINE Alu 0 316 1 2150 151 35 14 chr5 6657079 6657378 -196428154 + L1MA8 LINE L1 5860 6172 -119 207 0 0 0 chr5 6657378 6657401 -196428131 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2150 151 35 14 chr5 6657401 6657524 -196428008 + L1MA8 LINE L1 6172 6291 0 3524 227 68 49 chr5 6657737 6659052 -196426480 + L1MC4 LINE L1 6702 8040 -2 925 243 11 21 chr5 6659600 6659884 -196425648 - MER33 DNA MER1_type 0 324 44 180 0 0 0 chr5 6661811 6661831 -196423701 + (T)n Simple_repeat Simple_repeat 1 20 0 200 83 0 28 chr5 6662407 6662443 -196423089 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 2697 70 26 0 chr5 6662443 6662829 -196422703 - L1PA4 LINE L1 -24 6131 5736 864 230 9 28 chr5 6662869 6663086 -196422446 + MER20 DNA MER1_type 6 218 -1 444 152 30 0 chr5 6663289 6663388 -196422144 + (TA)n Simple_repeat Simple_repeat 2 103 0 28 29 0 0 chr5 6663456 6663491 -196422041 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr5 6663631 6663663 -196421869 + AT_rich Low_complexity Low_complexity 1 32 0 429 171 67 98 chr5 6663891 6664055 -196421477 + MER58B DNA MER1_type 175 333 -8 217 322 0 0 chr5 6664056 6664115 -196421417 + L2 LINE L2 3255 3313 0 411 238 81 31 chr5 6664647 6664807 -196420725 - MLT1J2 LTR MaLR -219 231 64 255 299 39 0 chr5 6664970 6665047 -196420485 + MIR SINE MIR 52 131 -77 494 310 33 5 chr5 6665327 6665511 -196420021 - MIR SINE MIR -43 219 31 953 266 83 32 chr5 6665622 6666054 -196419478 - LTR16A1 LTR ERVL -1 456 3 390 282 17 0 chr5 6667462 6667579 -196417953 + LTR16A1 LTR ERVL 21 139 -318 484 294 69 40 chr5 6667662 6668189 -196417343 + L1MDa LINE L1 1244 1828 -4830 320 294 29 44 chr5 6668239 6668375 -196417157 + HAL1 LINE L1 362 495 -2012 294 237 0 0 chr5 6668423 6668499 -196417033 + (TA)n Simple_repeat Simple_repeat 1 76 0 298 191 186 55 chr5 6668784 6669020 -196416512 + HAL1 LINE L1 908 1174 -1333 788 290 82 22 chr5 6669054 6669506 -196416026 + HAL1 LINE L1 1756 2234 -273 249 254 16 25 chr5 6669520 6669642 -196415890 + HAL1 LINE L1 2270 2390 -117 24 32 0 0 chr5 6670350 6670381 -196415151 + AT_rich Low_complexity Low_complexity 1 31 0 817 185 6 0 chr5 6670472 6670650 -196414882 - L1MA6 LINE L1 -11 6289 6111 2221 71 0 0 chr5 6670825 6671093 -196414439 + AluY SINE Alu 29 296 -15 222 37 0 0 chr5 6671106 6671133 -196414399 + (TG)n Simple_repeat Simple_repeat 2 28 0 1568 215 81 39 chr5 6671927 6672410 -196413122 + MLT1D LTR MaLR 1 503 -2 1103 218 100 50 chr5 6673181 6673621 -196411911 - MLT1C LTR MaLR 0 467 6 344 219 14 0 chr5 6673777 6673850 -196411682 - MER20 DNA MER1_type 0 219 146 1709 151 15 4 chr5 6673882 6674154 -196411378 + AluJb SINE Alu 1 275 -37 249 188 0 21 chr5 6675009 6675057 -196410475 + L3 LINE CR1 1526 1572 -5 1500 190 62 60 chr5 6675705 6676169 -196409363 - MLT1C LTR MaLR 0 467 3 864 174 177 119 chr5 6676259 6676357 -196409175 - MLT1A1 LTR MaLR 0 365 274 1673 190 0 29 chr5 6676357 6676667 -196408865 + AluJb SINE Alu 10 310 -2 864 174 177 119 chr5 6676667 6676912 -196408620 - MLT1A1 LTR MaLR -91 274 2 441 129 0 0 chr5 6676983 6677053 -196408479 + (TATATG)n Simple_repeat Simple_repeat 4 73 0 21 0 0 0 chr5 6677879 6677900 -196407632 + AT_rich Low_complexity Low_complexity 1 21 0 304 357 132 0 chr5 6678395 6678622 -196406910 - MIR SINE MIR -1 261 5 214 116 0 47 chr5 6678641 6678684 -196406848 + (TCC)n Simple_repeat Simple_repeat 2 42 0 187 318 82 45 chr5 6678949 6679059 -196406473 + MER5A DNA MER1_type 36 149 -40 209 213 0 0 chr5 6679369 6679416 -196406116 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 1183 162 5 18 chr5 6681219 6681441 -196404091 - MER20 DNA MER1_type 0 219 1 465 203 95 42 chr5 6681722 6681880 -196403652 + MIR SINE MIR 35 201 -61 390 196 52 0 chr5 6682306 6682403 -196403129 - MLT1H1 LTR MaLR 0 555 454 344 88 18 0 chr5 6682566 6682623 -196402909 + (TC)n Simple_repeat Simple_repeat 1 58 0 371 298 105 11 chr5 6682685 6682964 -196402568 - MLT1H1 LTR MaLR -292 263 1 180 336 109 34 chr5 6682967 6683086 -196402446 - MER5A DNA MER1_type -40 149 22 286 232 30 30 chr5 6683171 6683270 -196402262 + Charlie7 DNA MER1_type 131 229 -2383 284 272 35 18 chr5 6683346 6683460 -196402072 + Charlie7 DNA MER1_type 1487 1602 -1010 2782 107 46 7 chr5 6683694 6684152 -196401380 + L1PB1 LINE L1 5676 6151 0 21 0 0 0 chr5 6684256 6684277 -196401255 + AT_rich Low_complexity Low_complexity 1 21 0 751 274 64 24 chr5 6684309 6684526 -196401006 + Charlie7 DNA MER1_type 1942 2149 -463 1820 106 23 0 chr5 6684526 6684782 -196400750 - AluY SINE Alu -11 300 39 751 274 64 24 chr5 6684782 6685141 -196400391 + Charlie7 DNA MER1_type 2149 2612 0 21 0 0 0 chr5 6685473 6685494 -196400038 + AT_rich Low_complexity Low_complexity 1 21 0 909 262 5 0 chr5 6686387 6686601 -196398931 - MER58A DNA MER1_type -9 215 1 24 67 0 0 chr5 6686698 6686743 -196398789 + AT_rich Low_complexity Low_complexity 1 45 0 246 105 0 0 chr5 6687464 6687502 -196398030 + (TG)n Simple_repeat Simple_repeat 2 39 0 24 0 0 0 chr5 6687837 6687861 -196397671 + AT_rich Low_complexity Low_complexity 1 24 0 909 159 5 15 chr5 6688161 6688356 -196397176 - L1MA4 LINE L1 -7 6293 6101 385 110 79 18 chr5 6690062 6690226 -196395306 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 1952 236 165 5 chr5 6690511 6691074 -196394458 + MLT1E1 LTR MaLR 1 653 -1 936 204 9 18 chr5 6691078 6691303 -196394229 - MLT1D LTR MaLR 0 505 283 249 257 135 0 chr5 6691343 6691417 -196394115 - MLT1D LTR MaLR -541 85 2 2075 113 39 0 chr5 6692097 6692381 -196393151 + AluSg1 SINE Alu 1 295 -14 829 210 95 5 chr5 6692656 6692856 -196392676 - MER20 DNA MER1_type -1 218 1 327 241 60 0 chr5 6693139 6693222 -196392310 + MIR SINE MIR 125 212 -50 231 297 117 14 chr5 6693707 6693852 -196391680 + MIR3 SINE MIR 26 185 -23 1820 147 124 48 chr5 6694256 6694652 -196390880 - MSTA LTR MaLR -2 426 1 7603 150 5 34 chr5 6694652 6696075 -196389457 - MSTA-int LTR MaLR 0 1580 200 470 231 48 27 chr5 6696086 6696233 -196389299 + LTR49-int LTR ERV1 3058 3207 -3124 29606 100 20 57 chr5 6696234 6702612 -196382920 - L1PA7 LINE L1 -1 6153 12 1016 166 10 5 chr5 6702623 6702822 -196382710 - MSTA-int LTR MaLR -1378 202 3 1813 151 133 21 chr5 6702826 6703209 -196382323 - MSTA LTR MaLR -2 426 1 395 280 10 0 chr5 6703248 6703348 -196382184 - MER58 DNA MER1_type -2310 110 10 2178 226 59 6 chr5 6703787 6704314 -196381218 - MER68 LTR ERV1 -7 555 1 24 32 0 0 chr5 6704461 6704492 -196381040 + AT_rich Low_complexity Low_complexity 1 31 0 265 324 39 10 chr5 6704673 6704775 -196380757 - MIR SINE MIR -105 157 53 21 71 0 0 chr5 6706166 6706208 -196379324 + AT_rich Low_complexity Low_complexity 1 42 0 325 255 33 85 chr5 6706289 6706501 -196379031 - L1MC5 LINE L1 -36 7925 7725 318 375 53 33 chr5 6706544 6706904 -196378628 + L3 LINE CR1 1133 1499 -78 247 261 52 70 chr5 6707103 6707218 -196378314 + MIR SINE MIR 32 144 -118 2000 243 18 6 chr5 6708526 6709037 -196376495 - LTR53 LTR ERVL 0 519 3 221 232 11 63 chr5 6709811 6709906 -196375626 + CT-rich Low_complexity Low_complexity 5 94 0 2103 138 0 53 chr5 6710611 6710967 -196374565 - MER1B DNA MER1_type 0 337 1 198 0 0 0 chr5 6711227 6711249 -196374283 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 31 44 0 0 chr5 6711252 6711297 -196374235 + AT_rich Low_complexity Low_complexity 1 45 0 20403 20 0 0 chr5 6711297 6714582 -196370950 - L1HS LINE L1 0 6155 2871 2276 28 0 0 chr5 6714582 6714870 -196370662 + L1HS LINE L1 2580 2867 -3279 2022 128 6 25 chr5 6715085 6715404 -196370128 + AluSq SINE Alu 1 313 0 365 278 136 6 chr5 6715464 6715633 -196369899 - MIR SINE MIR -24 238 48 1184 331 118 28 chr5 6717449 6718689 -196366843 - L2 LINE L2 0 3313 1954 229 191 0 0 chr5 6720022 6720064 -196365468 + L2 LINE L2 3268 3309 -4 440 284 62 40 chr5 6722180 6722356 -196363176 + MIR SINE MIR 16 195 -67 1094 261 72 19 chr5 6722897 6723273 -196362259 - MSTD LTR MaLR 0 396 1 199 310 60 114 chr5 6724335 6724519 -196361013 + L2 LINE L2 2919 3092 -180 2724 167 39 6 chr5 6724582 6725115 -196360417 - MER34C LTR ERV1 0 585 35 1091 233 93 77 chr5 6725232 6725725 -196359807 - MLT1D LTR MaLR 0 505 5 23 33 0 0 chr5 6728643 6728673 -196356859 + AT_rich Low_complexity Low_complexity 1 30 0 527 165 0 10 chr5 6728819 6728916 -196356616 - Tigger7 DNA MER2_type -2 2585 2490 * 1116 222 44 4 chr5 6728915 6729163 -196356369 - Tigger7 DNA MER2_type -466 267 10 430 283 36 7 chr5 6729512 6729650 -196355882 - L2 LINE L2 -1 3312 3171 409 323 137 20 chr5 6729692 6730029 -196355503 - L2 LINE L2 -276 3037 2664 470 268 168 9 chr5 6730377 6730597 -196354935 + MIR SINE MIR 8 262 0 1456 226 94 5 chr5 6730694 6731118 -196354414 + MLT1C LTR MaLR 6 467 0 1326 156 8 16 chr5 6731433 6731683 -196353849 - L1PB1 LINE L1 -4 6147 5900 255 247 94 12 chr5 6732841 6732926 -196352606 + L2 LINE L2 3220 3311 -2 21 0 0 0 chr5 6733228 6733249 -196352283 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr5 6735892 6735939 -196349593 + AT_rich Low_complexity Low_complexity 1 47 0 300 232 12 24 chr5 6736462 6736544 -196348988 + L1ME4a LINE L1 5856 5936 -185 22 35 0 0 chr5 6736746 6736775 -196348757 + AT_rich Low_complexity Low_complexity 1 29 0 2332 122 34 0 chr5 6738007 6738359 -196347173 + THE1B LTR MaLR 1 364 0 239 228 22 43 chr5 6738368 6738460 -196347072 + CT-rich Low_complexity Low_complexity 4 93 0 290 275 12 0 chr5 6738731 6738811 -196346721 - MER20 DNA MER1_type -1 218 138 229 284 11 49 chr5 6741529 6741712 -196343820 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 2063 128 13 13 chr5 6742710 6743016 -196342516 - AluSx SINE Alu -6 306 1 1787 161 0 49 chr5 6743901 6744225 -196341307 + AluJb SINE Alu 2 309 -3 897 129 7 21 chr5 6745111 6745251 -196340281 + AluJb SINE Alu 1 138 -174 306 291 67 67 chr5 6745491 6745701 -196339831 + L2 LINE L2 2563 2772 -542 218 313 63 115 chr5 6745732 6746157 -196339375 + L2 LINE L2 2868 3270 -2 2470 70 0 0 chr5 6746351 6746651 -196338881 + AluY SINE Alu 1 300 -11 38 0 0 0 chr5 6747192 6747230 -196338302 + AT_rich Low_complexity Low_complexity 1 38 0 30 0 0 0 chr5 6747677 6747707 -196337825 + AT_rich Low_complexity Low_complexity 1 30 0 337 304 58 12 chr5 6748117 6748288 -196337244 - MIR SINE MIR -20 242 64 2145 100 0 42 chr5 6748619 6748930 -196336602 - AluY SINE Alu -11 300 3 349 309 93 27 chr5 6749935 6750194 -196335338 - MLT1L LTR MaLR -10 605 330 180 111 0 0 chr5 6750431 6750458 -196335074 + (CA)n Simple_repeat Simple_repeat 1 27 0 897 220 4 60 chr5 6750583 6750815 -196334717 - MER20 DNA MER1_type 0 219 1 2633 42 0 0 chr5 6752603 6752910 -196332622 + AluY SINE Alu 1 307 -4 288 98 20 0 chr5 6753663 6753714 -196331818 - L1PB2 LINE L1 -1 6150 6099 288 98 20 0 chr5 6753753 6753804 -196331728 - L1PB2 LINE L1 -1 6150 6099 2468 128 5 3 chr5 6753843 6754232 -196331300 - L1PB2 LINE L1 -1 6150 5761 2197 162 13 8 chr5 6754419 6754807 -196330725 - MLT1B LTR MaLR 0 390 1 288 318 86 20 chr5 6755102 6755253 -196330279 + MIR SINE MIR 89 249 -13 288 304 0 38 chr5 6755261 6755340 -196330192 + L2 LINE L2 3197 3272 0 350 176 14 14 chr5 6755901 6755975 -196329557 - MLT1C LTR MaLR 0 467 394 1471 139 0 8 chr5 6755989 6756241 -196329291 - L1PA14 LINE L1 -2 6159 5910 7012 196 20 50 chr5 6756241 6758510 -196327022 + L1PA12 LINE L1 2604 4789 -2795 960 218 150 35 chr5 6758510 6758877 -196326655 - MLT1C LTR MaLR -58 409 1 533 293 131 38 chr5 6760317 6760408 -196325124 + L2 LINE L2 2855 2936 -377 813 275 28 0 chr5 6760408 6760626 -196324906 - MER58A DNA MER1_type 0 224 1 533 293 131 38 chr5 6760626 6760954 -196324578 + L2 LINE L2 2936 3313 0 1945 196 3 8 chr5 6760961 6761328 -196324204 + MLT1A1 LTR MaLR 1 365 0 353 354 39 8 chr5 6761348 6761478 -196324054 + L2 LINE L2 3137 3270 -2 214 303 123 58 chr5 6763405 6763560 -196321972 - MIR SINE MIR -78 184 20 182 345 0 0 chr5 6763747 6763805 -196321727 + L3b LINE CR1 1186 1243 -340 307 304 9 9 chr5 6764237 6764352 -196321180 - MER94 DNA DNA -18 116 2 229 336 78 9 chr5 6766074 6766190 -196319342 - MIR SINE MIR -72 190 67 629 13 13 0 chr5 6766278 6766356 -196319176 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 21 0 0 0 chr5 6766422 6766443 -196319089 + AT_rich Low_complexity Low_complexity 1 21 0 2270 110 3 0 chr5 6766723 6767024 -196318508 + AluSp SINE Alu 1 302 -11 414 0 0 0 chr5 6767073 6767119 -196318413 + (TA)n Simple_repeat Simple_repeat 1 46 0 185 175 25 25 chr5 6767282 6767322 -196318210 - MIR SINE MIR 0 262 223 2126 154 0 40 chr5 6769154 6769505 -196316027 - MER1B DNA MER1_type 0 337 1 607 241 89 11 chr5 6769512 6769723 -196315809 + MIR SINE MIR 36 262 0 180 77 0 0 chr5 6770000 6770026 -196315506 + (TTG)n Simple_repeat Simple_repeat 2 27 0 489 259 9 26 chr5 6773224 6773340 -196312192 - MER81 DNA DNA 0 114 1 216 296 80 0 chr5 6775145 6775233 -196310299 + MIR SINE MIR 51 145 -117 446 311 137 5 chr5 6775766 6775978 -196309554 + MIR SINE MIR 10 249 -13 744 33 0 0 chr5 6776435 6776526 -196309006 + (CA)n Simple_repeat Simple_repeat 2 92 0 219 330 117 10 chr5 6777582 6777685 -196307847 - MIR3 SINE MIR -2 206 93 1124 244 69 41 chr5 6777704 6778068 -196307464 - MLT1A2 LTR MaLR 0 374 1 229 374 80 0 chr5 6778151 6778338 -196307194 - MIR SINE MIR -33 229 28 1576 180 17 20 chr5 6778779 6779079 -196306453 + AluJo SINE Alu 1 299 -13 1945 139 0 0 chr5 6780330 6780633 -196304899 - AluSg1 SINE Alu 0 303 1 204 306 52 60 chr5 6781887 6782021 -196303511 - MIR SINE MIR -50 212 80 265 282 19 19 chr5 6782998 6783101 -196302431 + CT-rich Low_complexity Low_complexity 2 104 0 312 286 40 48 chr5 6784822 6784948 -196300584 - L2 LINE L2 -18 3295 3171 221 294 109 23 chr5 6785136 6785401 -196300131 - L2 LINE L2 -1325 1989 1702 1747 171 48 25 chr5 6785843 6786199 -196299333 - MLT1A1 LTR MaLR 0 365 2 953 207 76 11 chr5 6787237 6787512 -196298020 + L1MA4 LINE L1 6005 6297 -3 510 149 184 0 chr5 6788502 6788616 -196296916 + L1MB7 LINE L1 6049 6183 -1 1585 218 0 0 chr5 6788976 6789274 -196296258 + AluJo SINE Alu 1 298 -14 569 329 62 26 chr5 6789649 6790071 -196295461 + HAL1b LINE L1 83 519 -829 234 328 46 36 chr5 6791222 6791417 -196294115 - L2 LINE L2 -493 2821 2625 545 226 123 64 chr5 6791606 6791810 -196293722 + MER106A DNA MER1_type 21 236 0 195 317 59 10 chr5 6791820 6791921 -196293611 - L2 LINE L2 -778 2536 2431 216 264 170 50 chr5 6791976 6792135 -196293397 - L2 LINE L2 -59 3254 3077 1562 227 66 37 chr5 6793909 6794363 -196291169 + MLT1C LTR MaLR 1 467 0 1966 125 10 16 chr5 6795577 6795889 -196289643 + AluSg SINE Alu 1 310 0 1992 244 58 70 chr5 6797618 6798275 -196287257 - MLT1E1 LTR MaLR 0 654 6 2024 177 28 14 chr5 6800485 6800841 -196284691 + MLT1A1 LTR MaLR 1 361 -4 180 0 0 0 chr5 6800904 6800924 -196284608 + (A)n Simple_repeat Simple_repeat 1 20 0 1703 195 22 30 chr5 6803378 6803742 -196281790 - MLT1A1 LTR MaLR 0 365 5 1133 162 11 109 chr5 6804888 6805172 -196280360 - L1MA9 LINE L1 -25 6287 6032 207 262 24 60 chr5 6805875 6805959 -196279573 + MER5B DNA MER1_type 27 107 -71 248 302 171 24 chr5 6807703 6807908 -196277624 - MIR SINE MIR 0 262 28 281 218 30 99 chr5 6807929 6808030 -196277502 - L2 LINE L2 -24 3289 3196 439 116 40 36 chr5 6809883 6810187 -196275345 + (TA)n Simple_repeat Simple_repeat 1 305 0 2239 167 24 0 chr5 6810206 6810578 -196274954 - MLT1B LTR MaLR -9 381 1 228 277 116 9 chr5 6811303 6811415 -196274117 + MIR3 SINE MIR 84 207 -1 410 180 22 0 chr5 6811586 6811675 -196273857 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 265 328 50 17 chr5 6812108 6812227 -196273305 + MIR3 SINE MIR 36 158 -50 886 176 99 43 chr5 6812413 6812715 -196272817 + MER33 DNA MER1_type 5 323 -1 22 0 0 0 chr5 6813401 6813423 -196272109 + AT_rich Low_complexity Low_complexity 1 22 0 5574 81 7 19 chr5 6813857 6814611 -196270921 - L1PA8A LINE L1 0 6131 5387 790 147 159 0 chr5 6814986 6815149 -196270383 + MER53 DNA DNA 1 189 0 243 348 70 21 chr5 6815949 6816136 -196269396 - L2 LINE L2 -1 3312 3117 362 314 80 7 chr5 6819125 6819262 -196266270 - MER5B DNA MER1_type -3 175 29 447 68 0 0 chr5 6819904 6819923 -196265609 + (CA)n Simple_repeat Simple_repeat 1 78 0 447 68 0 0 chr5 6819923 6819982 -196265550 + (CA)n Simple_repeat Simple_repeat 2 60 0 2174 133 0 0 chr5 6819994 6820295 -196265237 - AluSx SINE Alu -11 301 1 347 285 76 83 chr5 6820418 6821033 -196264499 + L1ME4a LINE L1 5468 6078 -43 910 286 84 23 chr5 6821397 6821893 -196263639 + L2 LINE L2 2723 3253 -60 1540 53 5 0 chr5 6822034 6822224 -196263308 + AluY SINE Alu 116 306 -5 1510 180 92 30 chr5 6822455 6822855 -196262677 - MER69 DNA AcHobo -13 2513 2089 586 274 95 21 chr5 6823675 6824202 -196261330 - L1M4c LINE L1 -4069 2577 1926 1836 154 4 4 chr5 6824207 6824487 -196261045 - AluJb SINE Alu -19 293 14 1916 139 17 46 chr5 6824487 6824832 -196260700 - THE1B LTR MaLR 0 364 30 6668 207 24 77 chr5 6824868 6826917 -196258615 - L1M4c LINE L1 -4712 1934 5 396 40 0 0 chr5 6827128 6827178 -196258354 + (TG)n Simple_repeat Simple_repeat 1 50 0 600 263 53 13 chr5 6827242 6827394 -196258138 + MER5A DNA MER1_type 32 189 0 571 294 82 77 chr5 6827834 6828628 -196256904 - L1M4 LINE L1 -1322 4824 4027 23 33 0 0 chr5 6828798 6828828 -196256704 + AT_rich Low_complexity Low_complexity 1 30 0 557 280 116 57 chr5 6829011 6829589 -196255943 + L1MC4a LINE L1 5293 5904 -1904 428 279 38 25 chr5 6829979 6830137 -196255395 - LTR67 LTR ERVL -369 188 29 2282 112 0 0 chr5 6830394 6830689 -196254843 - AluSx SINE Alu -17 295 1 212 289 134 35 chr5 6830886 6831028 -196254504 - MIR3 SINE MIR -23 185 30 305 266 164 83 chr5 6831349 6831579 -196253953 + L2 LINE L2 2694 2904 -409 2525 193 74 55 chr5 6831579 6832122 -196253410 - MLT2B3 LTR ERVL 0 554 2 305 266 164 83 chr5 6832122 6832282 -196253250 + L2 LINE L2 2904 3116 -197 375 188 83 21 chr5 6834062 6834158 -196251374 + LTR16A1 LTR ERVL 5 106 -351 1956 158 78 45 chr5 6834203 6834421 -196251111 - MLT1B LTR MaLR -4 386 150 2243 115 3 0 chr5 6834421 6834726 -196250806 - AluSx SINE Alu -2 310 5 1956 158 78 45 chr5 6834726 6834881 -196250651 - MLT1B LTR MaLR -240 150 1 444 19 0 0 chr5 6834892 6834945 -196250587 + (T)n Simple_repeat Simple_repeat 1 53 0 2233 203 65 15 chr5 6835473 6835951 -196249581 + MLT1D LTR MaLR 1 502 -3 1156 199 5 23 chr5 6836221 6836442 -196249090 - MER58A DNA MER1_type -2 222 6 299 180 66 0 chr5 6838006 6838067 -196247465 + L1MA9 LINE L1 6243 6307 -5 1258 144 0 33 chr5 6838857 6839072 -196246460 + L1MA9 LINE L1 6100 6307 -5 330 293 14 21 chr5 6839518 6839658 -196245874 + GA-rich Low_complexity Low_complexity 3 141 0 253 286 0 0 chr5 6839836 6839913 -196245619 - L2 LINE L2 -2 3311 3235 238 246 15 0 chr5 6840694 6840759 -196244773 + L1MB4 LINE L1 6115 6180 0 2924 139 21 25 chr5 6842049 6842532 -196243000 + MER31A LTR ERV1 1 481 -4 791 180 12 66 chr5 6842541 6842708 -196242824 - AluJ SINE Alu -25 287 130 739 145 0 90 chr5 6842712 6842857 -196242675 - AluJ SINE Alu -169 133 2 392 89 69 0 chr5 6842876 6842977 -196242555 + (TA)n Simple_repeat Simple_repeat 1 108 0 275 227 53 0 chr5 6842982 6843057 -196242475 + 7SK RNA RNA 15 93 -100 1702 243 165 45 chr5 6843932 6844559 -196240973 - L1ME3A LINE L1 -5 6165 5615 5344 78 0 0 chr5 6844559 6845222 -196240310 - L1PA8 LINE L1 -7 6165 5503 1702 243 165 45 chr5 6845222 6845864 -196239668 - L1ME3A LINE L1 -555 5615 4742 22 0 0 0 chr5 6846060 6846082 -196239450 + AT_rich Low_complexity Low_complexity 1 22 0 1814 157 17 0 chr5 6846088 6846213 -196239319 + AluJb SINE Alu 4 125 -187 2203 102 3 3 chr5 6846213 6846507 -196239025 + AluSc SINE Alu 1 294 -15 1814 157 17 0 chr5 6846507 6846668 -196238864 + AluJb SINE Alu 125 295 -17 2011 135 3 3 chr5 6847905 6848202 -196237330 - AluSq SINE Alu -15 298 2 586 267 85 6 chr5 6848812 6848988 -196236544 - MIR SINE MIR -55 207 18 19935 34 10 3 chr5 6849653 6852716 -196232816 + L1PA10 LINE L1 3100 6168 0 9325 187 19 56 chr5 6852718 6854532 -196231000 + L1MC3 LINE L1 5744 7470 -315 1932 123 3 34 chr5 6854532 6854825 -196230707 + AluSx SINE Alu 1 284 -28 9325 187 19 56 chr5 6854825 6855130 -196230402 + L1MC3 LINE L1 7470 7785 0 426 255 176 7 chr5 6855519 6855672 -196229860 + MER5A DNA MER1_type 4 182 -7 253 319 12 30 chr5 6906411 6906577 -196178955 + CT-rich Low_complexity Low_complexity 2 164 0 321 242 0 53 chr5 6906703 6906798 -196178734 - L1MC4 LINE L1 -1339 6703 6614 267 103 0 0 chr5 6906798 6906837 -196178695 + (CA)n Simple_repeat Simple_repeat 2 40 0 251 328 50 17 chr5 6907266 6907385 -196178147 + MIR3 SINE MIR 36 158 -50 834 176 99 43 chr5 6907571 6907873 -196177659 + MER33 DNA MER1_type 5 323 -1 5507 78 5 19 chr5 6909014 6909769 -196175763 - L1PA8A LINE L1 0 6131 5387 689 134 204 0 chr5 6910144 6910301 -196175231 + MER53 DNA DNA 1 189 0 21 0 0 0 chr5 6911380 6911401 -196174131 + AT_rich Low_complexity Low_complexity 1 21 0 256 247 94 12 chr5 6911703 6911788 -196173744 - L2 LINE L2 -2 3311 3220 1359 152 8 16 chr5 6912947 6913197 -196172335 + L1PB1 LINE L1 5900 6147 -4 1586 226 94 5 chr5 6913512 6913936 -196171596 - MLT1C LTR MaLR 0 467 6 483 264 168 9 chr5 6914033 6914253 -196171279 - MIR SINE MIR 0 262 8 389 323 137 20 chr5 6914601 6914938 -196170594 + L2 LINE L2 2664 3037 -276 423 283 36 7 chr5 6914980 6915118 -196170414 + L2 LINE L2 3171 3312 -1 1199 222 44 4 chr5 6915467 6915715 -196169817 + Tigger7 DNA MER2_type 10 267 -466 562 165 0 10 chr5 6915714 6915811 -196169721 + Tigger7 DNA MER2_type 2390 2485 -2 * 23 33 0 0 chr5 6915957 6915987 -196169545 + AT_rich Low_complexity Low_complexity 1 30 0 33 43 0 0 chr5 6919119 6919166 -196166366 + AT_rich Low_complexity Low_complexity 1 47 0 239 174 14 29 chr5 6919702 6919771 -196165761 + L1ME4a LINE L1 5869 5936 -185 22 35 0 0 chr5 6919973 6920002 -196165530 + AT_rich Low_complexity Low_complexity 1 29 0 2353 125 31 0 chr5 6921234 6921587 -196163945 + THE1B LTR MaLR 1 364 0 223 239 22 43 chr5 6921596 6921688 -196163844 + CT-rich Low_complexity Low_complexity 4 93 0 310 275 12 0 chr5 6921959 6922039 -196163493 - MER20 DNA MER1_type -1 218 138 21 71 0 0 chr5 6924200 6924242 -196161290 + AT_rich Low_complexity Low_complexity 1 42 0 375 255 33 85 chr5 6924323 6924535 -196160997 - L1MC5 LINE L1 -36 7925 7725 309 375 53 33 chr5 6924578 6924938 -196160594 + L3 LINE CR1 1133 1499 -78 239 261 52 70 chr5 6925137 6925252 -196160280 + MIR SINE MIR 32 144 -118 2212 247 18 6 chr5 6926560 6927071 -196158461 - LTR53 LTR ERVL 0 519 3 221 232 11 63 chr5 6927845 6927940 -196157592 + CT-rich Low_complexity Low_complexity 5 94 0 2246 140 0 53 chr5 6928645 6929001 -196156531 - MER1B DNA MER1_type 0 337 1 198 0 0 0 chr5 6929261 6929283 -196156249 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 31 44 0 0 chr5 6929286 6929331 -196156201 + AT_rich Low_complexity Low_complexity 1 45 0 10139 20 6 0 chr5 6929331 6931314 -196154218 - L1HS LINE L1 -1 6154 4159 1292 234 93 75 chr5 6932447 6932939 -196152593 + MLT1D LTR MaLR 5 505 0 2987 167 39 6 chr5 6933056 6933589 -196151943 + MER34C LTR ERV1 35 585 0 199 304 60 114 chr5 6933652 6933836 -196151696 - L2 LINE L2 -180 3092 2919 1266 258 72 19 chr5 6934898 6935274 -196150258 + MSTD LTR MaLR 1 396 0 432 284 62 40 chr5 6935816 6935992 -196149540 - MIR SINE MIR -67 195 16 225 191 0 0 chr5 6938108 6938150 -196147382 - L2 LINE L2 -4 3309 3268 1087 326 121 31 chr5 6939485 6940724 -196144808 + L2 LINE L2 1954 3313 0 377 273 36 7 chr5 6942570 6942709 -196142823 + MIR SINE MIR 96 238 -24 2012 121 6 34 chr5 6942765 6943087 -196142445 - AluSq SINE Alu 0 313 1 2428 71 6 5 chr5 6943255 6943597 -196141935 - L1P LINE L1 -3230 2916 2573 * 11205 26 0 0 chr5 6943590 6944893 -196140639 + L1P LINE L1 2871 4173 -1973 190 237 34 34 chr5 6945011 6945070 -196140462 - MIR SINE MIR -66 142 84 2226 169 24 0 chr5 6945791 6946163 -196139369 + MLT1B LTR MaLR 1 381 -9 443 123 34 37 chr5 6946189 6946517 -196139015 + (TA)n Simple_repeat Simple_repeat 1 327 0 281 218 30 99 chr5 6948370 6948471 -196137061 + L2 LINE L2 3196 3289 -24 248 302 171 24 chr5 6948492 6948697 -196136835 + MIR SINE MIR 28 262 0 207 262 24 60 chr5 6950441 6950525 -196135007 - MER5B DNA MER1_type -71 107 27 1133 162 11 109 chr5 6951228 6951512 -196134020 + L1MA9 LINE L1 6032 6287 -25 1724 192 22 30 chr5 6952658 6953022 -196132510 + MLT1A1 LTR MaLR 5 365 0 189 0 0 0 chr5 6955477 6955498 -196130034 + (T)n Simple_repeat Simple_repeat 1 21 0 2024 177 28 14 chr5 6955561 6955917 -196129615 - MLT1A1 LTR MaLR -4 361 1 1967 245 58 70 chr5 6958127 6958784 -196126748 + MLT1E1 LTR MaLR 6 654 0 1966 125 10 16 chr5 6960514 6960826 -196124706 - AluSg SINE Alu 0 310 1 1562 227 66 37 chr5 6962040 6962494 -196123038 - MLT1C LTR MaLR 0 467 1 247 332 75 27 chr5 6964168 6964355 -196121177 - L2 LINE L2 -1 3312 3117 362 314 80 7 chr5 6967344 6967481 -196118051 - MER5B DNA MER1_type -3 175 29 365 215 11 0 chr5 6968123 6968216 -196117316 + (TA)n Simple_repeat Simple_repeat 1 94 0 2067 136 0 7 chr5 6968216 6968518 -196117014 - AluSx SINE Alu -12 300 1 2176 112 14 3 chr5 6969198 6969493 -196116039 - AluSx SINE Alu -14 298 1 244 272 37 88 chr5 6971159 6971295 -196114237 - MIR SINE MIR -88 174 46 748 200 8 0 chr5 6972145 6972270 -196113262 + FLAM_C SINE Alu 2 127 -16 2180 130 3 0 chr5 6972614 6972921 -196112611 - AluSx SINE Alu -4 308 1 584 212 66 7 chr5 6972975 6973112 -196112420 - MER58B DNA MER1_type -5 336 192 1274 268 89 37 chr5 6973113 6973263 -196112269 - REP3 LTR ERV -26 536 395 2154 114 0 0 chr5 6973263 6973570 -196111962 + AluSx SINE Alu 1 307 0 1274 268 89 37 chr5 6973570 6973903 -196111629 - REP3 LTR ERV -167 395 27 206 118 0 0 chr5 6974540 6974574 -196110958 + (T)n Simple_repeat Simple_repeat 1 34 0 1858 126 70 0 chr5 6974713 6974999 -196110533 + AluSg SINE Alu 1 306 -4 204 418 27 0 chr5 6975489 6975599 -196109933 - L2 LINE L2 -17 3255 3143 2023 132 13 20 chr5 6976338 6976641 -196108891 + AluSx SINE Alu 1 301 -11 199 250 42 0 chr5 6976930 6976978 -196108554 + MIR SINE MIR 82 131 -131 201 273 0 0 chr5 6977208 6977263 -196108269 + A-rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr5 6978804 6978826 -196106706 + AT_rich Low_complexity Low_complexity 1 22 0 203 258 65 0 chr5 6979135 6979197 -196106335 - MIR SINE MIR -73 189 124 1499 165 68 11 chr5 6979308 6979598 -196105934 - AluSx SINE Alu 0 305 1 357 297 84 86 chr5 6979868 6980286 -196105246 + L2 LINE L2 2848 3264 -8 404 145 0 0 chr5 6980866 6980935 -196104597 - L1MA7 LINE L1 -30 6261 6193 21 0 0 0 chr5 6982070 6982091 -196103441 + AT_rich Low_complexity Low_complexity 1 21 0 4482 97 24 14 chr5 6983046 6983674 -196101858 + L1PB1 LINE L1 5517 6150 -1 292 314 51 19 chr5 6983707 6983863 -196101669 + L1MC4a LINE L1 5765 5925 -1883 219 273 0 0 chr5 6983914 6983969 -196101563 + (TA)n Simple_repeat Simple_repeat 1 55 0 241 303 55 85 chr5 6984286 6984451 -196101081 + MIR SINE MIR 77 236 -26 229 284 11 49 chr5 6986635 6986818 -196098714 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 2061 129 13 13 chr5 6987816 6988126 -196097406 - AluSx SINE Alu -2 310 1 1739 164 0 46 chr5 6989087 6989410 -196096122 + AluJo SINE Alu 2 309 -3 906 121 7 21 chr5 6990296 6990436 -196095096 + AluJb SINE Alu 1 138 -174 301 291 67 67 chr5 6990676 6990886 -196094646 + L2 LINE L2 2563 2772 -542 218 313 66 118 chr5 6990917 6991342 -196094190 + L2 LINE L2 2868 3270 -2 2502 67 0 0 chr5 6991536 6991834 -196093698 + AluY SINE Alu 1 298 -13 36 0 0 0 chr5 6992375 6992411 -196093121 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr5 6992858 6992888 -196092644 + AT_rich Low_complexity Low_complexity 1 30 0 346 304 58 12 chr5 6993296 6993467 -196092065 - MIR SINE MIR -20 242 64 2118 99 0 51 chr5 6993798 6994111 -196091421 - AluY SINE Alu -12 299 3 442 309 93 27 chr5 6995116 6995375 -196090157 - MLT1L LTR MaLR -10 605 330 180 111 0 0 chr5 6995611 6995638 -196089894 + (CA)n Simple_repeat Simple_repeat 1 27 0 989 207 9 65 chr5 6995763 6995995 -196089537 - MER20 DNA MER1_type 0 219 1 2746 29 0 0 chr5 6997784 6998091 -196087441 + AluY SINE Alu 1 307 -4 323 98 20 0 chr5 6998844 6998895 -196086637 - L1PB2 LINE L1 -1 6150 6099 323 98 20 0 chr5 6998934 6998985 -196086547 - L1PB2 LINE L1 -1 6150 6099 2666 128 5 3 chr5 6999024 6999413 -196086119 - L1PB2 LINE L1 -1 6150 5761 2361 162 13 10 chr5 6999600 6999989 -196085543 - MLT1B LTR MaLR 0 390 1 282 318 86 20 chr5 7000284 7000435 -196085097 + MIR SINE MIR 89 249 -13 283 304 0 38 chr5 7000443 7000522 -196085010 + L2 LINE L2 3197 3272 0 386 176 14 14 chr5 7001083 7001157 -196084375 - MLT1C LTR MaLR 0 467 394 7832 195 20 50 chr5 7001160 7001171 -196084361 + L1PA12 LINE L1 2593 2603 -4981 1593 139 0 8 chr5 7001171 7001423 -196084109 - L1PA14 LINE L1 -2 6159 5910 7832 195 20 50 chr5 7001423 7003685 -196081847 + L1PA12 LINE L1 2603 4782 -2802 1117 217 147 37 chr5 7003685 7004059 -196081473 - MLT1C LTR MaLR -52 415 1 566 284 137 34 chr5 7005531 7005590 -196079942 + L2 LINE L2 2886 2938 -375 899 275 28 0 chr5 7005590 7005808 -196079724 - MER58A DNA MER1_type 0 224 1 566 284 137 34 chr5 7005808 7006136 -196079396 + L2 LINE L2 2938 3313 0 2145 194 3 8 chr5 7006143 7006510 -196079022 + MLT1A1 LTR MaLR 1 365 0 344 354 39 8 chr5 7006530 7006660 -196078872 + L2 LINE L2 3137 3270 -2 216 303 123 58 chr5 7008588 7008743 -196076789 - MIR SINE MIR -78 184 20 349 304 9 9 chr5 7009420 7009535 -196075997 - MER94 DNA DNA -18 116 2 215 336 78 9 chr5 7011257 7011373 -196074159 - MIR SINE MIR -72 190 67 593 14 14 0 chr5 7011461 7011535 -196073997 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 21 0 0 0 chr5 7011601 7011622 -196073910 + AT_rich Low_complexity Low_complexity 1 21 0 2268 110 3 0 chr5 7011902 7012203 -196073329 + AluSp SINE Alu 1 302 -11 288 0 0 0 chr5 7012252 7012284 -196073248 + (TA)n Simple_repeat Simple_repeat 1 32 0 185 175 25 25 chr5 7012447 7012487 -196073045 - MIR SINE MIR 0 262 223 2267 157 0 40 chr5 7014321 7014672 -196070860 - MER1B DNA MER1_type 0 337 1 600 241 89 11 chr5 7014679 7014890 -196070642 + MIR SINE MIR 36 262 0 180 77 0 0 chr5 7015167 7015193 -196070339 + (TTG)n Simple_repeat Simple_repeat 2 27 0 489 259 9 26 chr5 7018391 7018507 -196067025 - MER81 DNA DNA 0 114 1 216 296 80 0 chr5 7020312 7020400 -196065132 + MIR SINE MIR 51 145 -117 446 311 137 5 chr5 7020933 7021145 -196064387 + MIR SINE MIR 10 249 -13 516 16 0 0 chr5 7021602 7021663 -196063869 + (CA)n Simple_repeat Simple_repeat 2 62 0 219 330 117 10 chr5 7022719 7022822 -196062710 - MIR3 SINE MIR -2 206 93 1124 244 69 41 chr5 7022841 7023205 -196062327 - MLT1A2 LTR MaLR 0 374 1 229 374 80 0 chr5 7023288 7023475 -196062057 - MIR SINE MIR -33 229 28 1603 177 17 20 chr5 7023916 7024216 -196061316 + AluJo SINE Alu 1 299 -13 1960 136 0 0 chr5 7025467 7025770 -196059762 - AluSg1 SINE Alu 0 303 1 208 259 46 74 chr5 7027025 7027133 -196058399 - MIR SINE MIR -50 212 108 265 282 19 19 chr5 7028179 7028282 -196057250 + CT-rich Low_complexity Low_complexity 2 104 0 307 294 40 48 chr5 7030006 7030132 -196055400 - L2 LINE L2 -18 3295 3171 209 306 106 19 chr5 7030321 7030586 -196054946 - L2 LINE L2 -1325 1989 1702 1586 174 48 25 chr5 7031028 7031384 -196054148 - MLT1A1 LTR MaLR 0 365 2 828 207 76 11 chr5 7032432 7032707 -196052825 + L1MA4 LINE L1 6005 6297 -3 299 175 32 0 chr5 7033697 7033760 -196051772 + L1MB7 LINE L1 6049 6113 -71 311 267 0 0 chr5 7034234 7034309 -196051223 + MIR SINE MIR 78 152 -110 2595 52 0 3 chr5 7035948 7036253 -196049279 + AluY SINE Alu 1 304 -7 1795 174 3 25 chr5 7036981 7037228 -196048304 + AluJo SINE Alu 1 241 -71 1793 155 64 25 chr5 7037228 7037589 -196047943 - THE1C LTR MaLR 0 375 1 1795 174 3 25 chr5 7037589 7037657 -196047875 + AluJo SINE Alu 241 309 -3 281 298 78 7 chr5 7038306 7038447 -196047085 - MER104 DNA Tc2 -1 179 29 788 227 146 57 chr5 7038808 7039143 -196046389 - MLT1A1 LTR MaLR 0 365 1 1700 183 59 67 chr5 7039599 7039791 -196045741 + MSTB LTR MaLR 4 196 -230 2475 77 0 0 chr5 7039791 7040102 -196045430 - AluY SINE Alu 0 311 1 1700 183 59 67 chr5 7040102 7040330 -196045202 + MSTB LTR MaLR 196 421 -5 322 370 19 19 chr5 7040761 7040923 -196044609 - MIR SINE MIR -32 230 69 516 244 161 0 chr5 7041476 7041681 -196043851 + MIR SINE MIR 13 250 -12 1089 157 52 9 chr5 7042419 7042629 -196042903 + MER20 DNA MER1_type 1 219 0 633 255 57 38 chr5 7042931 7043194 -196042338 - MLT1L LTR MaLR -221 394 127 181 390 26 0 chr5 7043587 7043664 -196041868 - MIR3 SINE MIR -21 187 109 1295 156 22 6 chr5 7043780 7044167 -196041365 - LTR47B LTR ERVL 0 443 1 317 236 46 50 chr5 7044198 7044370 -196041162 + MER87 LTR ERV1 1 146 -395 547 260 91 57 chr5 7044527 7044927 -196040605 + LTR8A LTR ERV1 280 603 -19 1925 115 0 17 chr5 7045823 7046110 -196039422 + L1PA8 LINE L1 5891 6172 0 2137 119 3 0 chr5 7046677 7046963 -196038569 + AluSx SINE Alu 1 287 -25 384 209 0 0 chr5 7047946 7048032 -196037500 + CT-rich Low_complexity Low_complexity 2 87 0 2340 69 3 16 chr5 7048135 7048439 -196037093 - AluY SINE Alu -11 300 1 22 0 0 0 chr5 7049279 7049301 -196036231 + AT_rich Low_complexity Low_complexity 1 22 0 2155 105 7 0 chr5 7050335 7050629 -196034903 + AluSx SINE Alu 1 296 -16 28 71 0 0 chr5 7050739 7050795 -196034737 + AT_rich Low_complexity Low_complexity 1 56 0 27 73 0 0 chr5 7051028 7051083 -196034449 + AT_rich Low_complexity Low_complexity 1 55 0 26 50 0 0 chr5 7051295 7051335 -196034197 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr5 7051457 7051479 -196034053 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr5 7051488 7051514 -196034018 + AT_rich Low_complexity Low_complexity 1 26 0 1836 168 22 11 chr5 7053686 7054043 -196031489 + MER46B DNA MER2_type 1 236 0 1981 246 78 25 chr5 7055107 7055668 -196029864 - MLT1E LTR MaLR 0 593 3 404 298 56 120 chr5 7055677 7056396 -196029136 - MLT1E-int LTR MaLR -7 1364 692 713 277 62 10 chr5 7056614 7056903 -196028629 - MLT1E-int LTR MaLR -755 616 313 3675 180 28 25 chr5 7056953 7057810 -196027722 - L1MB4 LINE L1 -25 6155 5296 488 181 23 38 chr5 7057830 7057963 -196027569 - L1MA8 LINE L1 -19 6272 6142 434 278 43 16 chr5 7057996 7058183 -196027349 - MLT1E-int LTR MaLR -1174 197 6 1750 253 104 8 chr5 7058197 7058718 -196026814 - MLT1E LTR MaLR -15 578 8 2750 13 0 22 chr5 7062075 7062391 -196023141 + AluYa5 SINE Alu 1 309 -2 27 29 0 0 chr5 7064662 7064696 -196020836 + AT_rich Low_complexity Low_complexity 1 34 0 196 237 219 18 chr5 7066288 7066402 -196019130 + MIR3 SINE MIR 12 148 -60 446 350 23 18 chr5 7067086 7067303 -196018229 - MIR SINE MIR -6 256 39 21 57 0 0 chr5 7068814 7068849 -196016683 + AT_rich Low_complexity Low_complexity 1 35 0 331 315 8 24 chr5 7069937 7070064 -196015468 - MIR SINE MIR -26 236 112 344 221 87 29 chr5 7070475 7070579 -196014953 + MER91C DNA MER1_type 8 117 -23 1902 149 22 0 chr5 7073137 7073455 -196012077 - AluSx SINE Alu 0 324 1 344 266 31 16 chr5 7074342 7074470 -196011062 - L1MA9 LINE L1 -38 6274 6145 996 190 20 0 chr5 7074491 7074769 -196010763 - L1M3 LINE L1 -693 5475 5193 1324 212 47 30 chr5 7074769 7074821 -196010711 + L1MA9 LINE L1 5731 5781 -531 369 0 0 0 chr5 7074821 7074862 -196010670 + (CA)n Simple_repeat Simple_repeat 2 42 0 1324 212 47 30 chr5 7074862 7075210 -196010322 + L1MA9 LINE L1 5781 6138 -174 1317 197 18 0 chr5 7075204 7075478 -196010054 + L1M2 LINE L1 5452 5730 -582 * 400 219 202 0 chr5 7076133 7076316 -196009216 + MIR SINE MIR 13 232 -30 2025 81 3 14 chr5 7076858 7077142 -196008390 - L1PA7 LINE L1 -1 6153 5873 2108 112 47 0 chr5 7078546 7078842 -196006690 - AluSg SINE Alu 0 310 1 283 326 10 0 chr5 7081527 7081625 -196003907 + L2 LINE L2 3200 3298 -15 347 294 70 80 chr5 7082013 7082200 -196003332 - MER91A DNA MER1_type 0 196 12 671 284 15 61 chr5 7082326 7082653 -196002879 + L1M4 LINE L1 3854 4165 -1981 206 323 71 55 chr5 7083077 7083204 -196002328 - L2 LINE L2 -21 3251 3123 189 0 0 0 chr5 7083613 7083634 -196001898 + (TA)n Simple_repeat Simple_repeat 1 21 0 2095 98 9 67 chr5 7083932 7084260 -196001272 - AluSc SINE Alu 0 309 1 207 188 0 0 chr5 7084694 7084742 -196000790 + A-rich Low_complexity Low_complexity 2 49 0 296 100 0 0 chr5 7085616 7085656 -195999876 - THE1B LTR MaLR 0 355 316 1324 125 64 53 chr5 7085764 7086048 -195999484 - THE1B LTR MaLR -91 284 1 12469 92 14 0 chr5 7086049 7087607 -195997925 - THE1B-int LTR MaLR -1 1579 1 2388 136 43 14 chr5 7087609 7087961 -195997571 - THE1B LTR MaLR -2 362 1 387 60 0 0 chr5 7088696 7088746 -195996786 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 265 294 50 17 chr5 7089621 7089740 -195995792 - MIR SINE MIR -37 225 103 261 219 0 0 chr5 7090839 7090912 -195994620 + (TA)n Simple_repeat Simple_repeat 1 73 0 1386 258 119 39 chr5 7090916 7091454 -195994078 - MLT1E LTR MaLR 0 593 13 7180 63 30 47 chr5 7091765 7092811 -195992721 - L1PA7 LINE L1 0 6154 5108 2449 95 0 11 chr5 7092812 7093161 -195992371 - L1PA7 LINE L1 -3063 3083 2739 207 157 20 20 chr5 7093283 7093334 -195992198 + T-rich Low_complexity Low_complexity 2 52 0 225 0 0 0 chr5 7093707 7093732 -195991800 + (TG)n Simple_repeat Simple_repeat 2 26 0 369 0 0 0 chr5 7095410 7095451 -195990081 + (CA)n Simple_repeat Simple_repeat 2 42 0 1401 184 20 13 chr5 7095692 7096086 -195989446 - L1MA4A LINE L1 -23 6280 5823 2453 89 0 0 chr5 7096092 7096395 -195989137 - AluSc SINE Alu -6 303 1 1868 245 47 38 chr5 7096478 7097111 -195988421 - L1ME1 LINE L1 -5 6230 5592 4568 242 107 31 chr5 7097503 7099280 -195986252 - L1ME1 LINE L1 -757 5458 3656 2550 278 49 35 chr5 7099297 7100245 -195985287 - L1ME1 LINE L1 -4925 965 38 2375 96 0 0 chr5 7101928 7102231 -195983301 - AluSx SINE Alu -9 303 1 21 0 0 0 chr5 7102716 7102737 -195982795 + AT_rich Low_complexity Low_complexity 1 21 0 2520 225 23 8 chr5 7103029 7103549 -195981983 + MER68 LTR ERV1 35 562 0 1814 280 88 53 chr5 7103560 7104633 -195980899 + HAL1 LINE L1 241 1351 -1156 225 0 0 0 chr5 7104714 7104739 -195980793 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 193 370 65 7 chr5 7106421 7106559 -195978973 + MIR SINE MIR 1 146 -116 526 146 73 0 chr5 7107565 7107661 -195977871 - AluJb SINE Alu -2 310 208 2431 99 3 3 chr5 7107661 7107994 -195977538 - L1PA7 LINE L1 -147 6007 5675 1491 215 18 0 chr5 7109558 7109865 -195975667 + AluJo SINE Alu 1 312 0 381 211 96 29 chr5 7110153 7110257 -195975275 + ORSL DNA AcHobo 164 274 -1 282 238 12 36 chr5 7110872 7110956 -195974576 + L2 LINE L2 3200 3281 -32 210 189 19 19 chr5 7111484 7111537 -195973995 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 1937 173 0 0 chr5 7112469 7112770 -195972762 + AluSx SINE Alu 1 301 -11 279 59 0 0 chr5 7113103 7113151 -195972381 + L1PA2 LINE L1 6113 6155 0 21 71 0 0 chr5 7114124 7114166 -195971366 + AT_rich Low_complexity Low_complexity 1 42 0 4864 152 10 12 chr5 7115017 7115580 -195969952 - L1MB1 LINE L1 0 6168 5606 1897 154 3 0 chr5 7115580 7115879 -195969653 - AluSx SINE Alu -12 300 1 4864 152 10 12 chr5 7115879 7116125 -195969407 - L1MB1 LINE L1 -562 5606 5361 24 0 0 0 chr5 7116425 7116449 -195969083 + AT_rich Low_complexity Low_complexity 1 24 0 656 257 27 16 chr5 7122090 7122277 -195963255 + MER5A DNA MER1_type 1 189 0 1809 146 3 14 chr5 7122853 7123166 -195962366 + AluSx SINE Alu 1 310 0 219 36 0 0 chr5 7123219 7123247 -195962285 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 192 279 9 90 chr5 7123503 7123614 -195961918 - MIR SINE MIR -8 254 153 312 324 28 34 chr5 7123616 7123795 -195961737 - MER46C DNA MER2_type -2 336 159 257 255 10 88 chr5 7123959 7124061 -195961471 - MIR SINE MIR -65 143 50 2152 113 3 3 chr5 7127235 7127539 -195957993 + AluSp SINE Alu 2 305 0 311 193 12 0 chr5 7132087 7132170 -195953362 + CT-rich Low_complexity Low_complexity 4 87 0 2098 134 3 3 chr5 7133291 7133597 -195951935 + AluJb SINE Alu 1 306 -6 189 0 0 0 chr5 7136333 7136354 -195949178 + (T)n Simple_repeat Simple_repeat 1 21 0 301 185 99 12 chr5 7137779 7137860 -195947672 - L1MCa LINE L1 -4362 2064 1977 189 0 0 0 chr5 7142178 7142199 -195943333 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 2862 224 44 6 chr5 7142816 7143612 -195941920 - L1MB7 LINE L1 -42 6142 5317 800 84 34 0 chr5 7143606 7143725 -195941807 + L1PA16 LINE L1 1 123 -6726 * 2109 141 35 16 chr5 7143725 7144093 -195941439 - THE1C LTR MaLR 0 375 1 8956 136 37 15 chr5 7144098 7145638 -195939894 - THE1C-int LTR MaLR -6 1574 1 2181 135 30 16 chr5 7145638 7146008 -195939524 - THE1C LTR MaLR 0 375 1 8182 198 83 16 chr5 7146008 7147752 -195937780 + L1PA16 LINE L1 119 1979 -4870 429 232 32 0 chr5 7147755 7147910 -195937622 + GA-rich Low_complexity Low_complexity 1 160 0 1294 166 169 13 chr5 7147923 7148230 -195937302 + L1PA11 LINE L1 5820 6174 0 2815 152 47 5 chr5 7148233 7148813 -195936719 + L1PA16 LINE L1 1980 2583 -4266 1067 129 31 0 chr5 7148813 7149006 -195936526 - L1PA15-16 LINE L1 -4911 1938 1740 2786 275 39 18 chr5 7149009 7150181 -195935351 + L1PA16 LINE L1 2540 3736 -3113 4041 165 42 6 chr5 7150192 7151588 -195933944 + L1PA16 LINE L1 5295 6734 -135 233 193 34 91 chr5 7151688 7151776 -195933756 + L1PA16 LINE L1 6747 6829 -40 2196 103 3 29 chr5 7151777 7152089 -195933443 + AluSp SINE Alu 1 304 -9 2721 232 17 27 chr5 7152177 7152818 -195932714 - L1M4 LINE L1 -797 5349 4716 2141 187 26 35 chr5 7152818 7153277 -195932255 + MSTB2 LTR MaLR 3 457 0 2721 232 17 27 chr5 7153277 7153455 -195932077 - L1M4 LINE L1 -1430 4716 4538 2103 118 7 10 chr5 7154238 7154534 -195930998 + AluSq SINE Alu 1 295 -18 1999 112 36 10 chr5 7154599 7154868 -195930664 + AluY SINE Alu 1 280 -31 297 0 0 0 chr5 7154868 7154901 -195930631 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1999 112 36 10 chr5 7154901 7154934 -195930598 + AluY SINE Alu 280 311 0 831 237 38 114 chr5 7155871 7156293 -195929239 + MLT1B LTR MaLR 1 390 0 300 315 0 0 chr5 7157069 7157177 -195928355 + GA-rich Low_complexity Low_complexity 1 108 0 1141 175 85 90 chr5 7157630 7157951 -195927581 + MLT1A1 LTR MaLR 2 322 -43 1891 131 0 0 chr5 7157951 7158219 -195927313 - AluSc SINE Alu -5 304 37 1141 175 85 90 chr5 7158219 7158263 -195927269 + MLT1A1 LTR MaLR 322 365 0 417 281 101 26 chr5 7158379 7158834 -195926698 - MER69 DNA AcHobo -27 2499 2011 741 299 129 6 chr5 7158858 7159222 -195926310 - MER69 DNA AcHobo -2016 510 102 604 280 36 10 chr5 7159409 7159602 -195925930 + MIR SINE MIR 65 262 0 2378 73 7 0 chr5 7160688 7160991 -195924541 - AluY SINE Alu -6 305 1 1226 84 48 0 chr5 7162816 7163043 -195922489 + HERVH LTR ERV1 437 674 -7039 183 42 0 0 chr5 7163782 7163806 -195921726 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1604 89 4 0 chr5 7164071 7164308 -195921224 + HERVH LTR ERV1 437 674 -7039 5153 110 24 17 chr5 7164332 7165812 -195919720 + HERVH LTR ERV1 1 1430 -6283 35069 39 2 3 chr5 7165812 7171115 -195914417 + L1PA4 LINE L1 850 6147 -8 10154 91 8 26 chr5 7171121 7172722 -195912810 + HERVH LTR ERV1 1415 2987 -4726 5906 84 2 2 chr5 7172716 7173570 -195911962 + HERVH LTR ERV1 3140 3993 -3720 * 4260 127 1 1 chr5 7173572 7174234 -195911298 + HERVH LTR ERV1 4488 5149 -2564 1239 136 28 0 chr5 7174235 7174449 -195911083 + HERVH LTR ERV1 5600 5819 -1894 2196 96 53 11 chr5 7174449 7174823 -195910709 + HERVH LTR ERV1 7324 7713 0 2268 91 129 5 chr5 7174823 7175217 -195910315 + LTR7 LTR ERV1 1 443 -7 1492 199 30 41 chr5 7176268 7176709 -195908823 - MER65A LTR ERV1 -9 436 1 395 272 91 48 chr5 7176828 7177265 -195908267 + L1ME1 LINE L1 791 1247 -5001 2159 135 3 0 chr5 7177265 7177576 -195907956 + AluSx SINE Alu 1 312 0 395 272 91 48 chr5 7177576 7177692 -195907840 + L1ME1 LINE L1 1247 1357 -4891 352 246 126 0 chr5 7177734 7177909 -195907623 + L1ME1 LINE L1 5032 5228 -987 2198 150 14 3 chr5 7177927 7178287 -195907245 - THE1B LTR MaLR 0 364 1 741 60 0 17 chr5 7178292 7178408 -195907124 - THE1B-int LTR MaLR -6 1574 1461 * 2954 105 47 76 chr5 7178404 7178956 -195906576 - THE1B-int LTR MaLR -1044 536 1 2118 140 20 6 chr5 7178956 7179313 -195906219 - THE1B LTR MaLR 0 364 3 1919 246 78 21 chr5 7179315 7180213 -195905319 + L1ME1 LINE L1 5244 6194 -41 24 0 0 0 chr5 7180503 7180527 -195905005 + AT_rich Low_complexity Low_complexity 1 24 0 268 250 40 55 chr5 7181104 7181220 -195904312 + MLT1J2 LTR MaLR 80 157 -293 251 214 18 0 chr5 7181327 7181383 -195904149 - L1ME LINE L1 -287 5877 5821 1926 312 49 42 chr5 7181865 7182998 -195902534 + L1M3f LINE L1 41 1182 -4146 5215 25 0 5 chr5 7183014 7183624 -195901908 + L1PA3 LINE L1 5546 6152 -3 5608 182 39 11 chr5 7183756 7184303 -195901229 + L1MA8 LINE L1 4136 4666 -1625 225 0 0 0 chr5 7184303 7184328 -195901204 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5608 182 39 11 chr5 7184328 7185378 -195900154 + L1MA8 LINE L1 4666 5807 -484 315 0 0 0 chr5 7185378 7185413 -195900119 + (CA)n Simple_repeat Simple_repeat 2 36 0 5608 182 39 11 chr5 7185413 7185814 -195899718 + L1MA8 LINE L1 5807 6195 -96 1747 236 83 18 chr5 7186369 7186938 -195898594 + L1ME1 LINE L1 5541 6146 -20 2477 80 0 0 chr5 7188663 7188974 -195896558 - AluY SINE Alu 0 311 1 588 237 179 12 chr5 7189563 7189867 -195895665 - L1MC4a LINE L1 -371 5750 5537 3173 224 41 0 chr5 7190138 7190816 -195894716 + MER54A LTR ERVL 196 901 0 408 337 27 11 chr5 7191191 7191375 -195894157 - MIR SINE MIR -68 194 8 215 195 65 39 chr5 7191586 7191663 -195893869 + MIR SINE MIR 128 206 -56 934 185 9 5 chr5 7192423 7192639 -195892893 + L1MA7 LINE L1 6065 6281 -10 639 176 0 0 chr5 7192701 7192809 -195892723 - FLAM_A SINE Alu -20 122 15 206 361 56 0 chr5 7192828 7192900 -195892632 - L2 LINE L2 -41 3231 3156 2702 112 26 24 chr5 7193017 7193438 -195892094 - MSTA LTR MaLR 0 428 7 658 345 109 7 chr5 7193479 7193890 -195891642 + LTR33 LTR ERVL 1 453 -68 13063 194 75 38 chr5 7196681 7202492 -195883040 + L1MA4A LINE L1 1 6054 -951 414 224 138 17 chr5 7202492 7202608 -195882924 + FLAM_C SINE Alu 2 131 -2 13063 194 75 38 chr5 7202608 7202852 -195882680 + L1MA4A LINE L1 6054 6288 -717 2239 156 5 39 chr5 7202952 7203394 -195882138 + L1MA4A LINE L1 6574 7000 -5 1169 241 118 42 chr5 7204360 7204816 -195880716 + MER74A LTR ERVL 5 495 -63 1364 116 0 54 chr5 7205273 7205497 -195880035 - AluSq SINE Alu -80 233 22 2447 183 37 123 chr5 7205631 7206466 -195879066 - L1MB4 LINE L1 0 6180 5418 1768 186 49 46 chr5 7206606 7207082 -195878450 - L1M3 LINE L1 -455 5725 5248 2471 98 136 2 chr5 7207084 7207481 -195878051 - L1PA14 LINE L1 -3 6158 5709 21 36 0 0 chr5 7207567 7207595 -195877937 + AT_rich Low_complexity Low_complexity 1 28 0 489 81 14 0 chr5 7208561 7208635 -195876897 - L1PA7 LINE L1 -957 5189 5115 6693 62 20 0 chr5 7208635 7209594 -195875938 + L1PA7 LINE L1 5177 6153 -1 526 240 35 84 chr5 7310470 7310722 -195774810 - L1MC4 LINE L1 -422 7620 7392 2069 104 0 52 chr5 7310722 7311050 -195774482 - AluSx SINE Alu -1 311 1 526 240 35 84 chr5 7311050 7311165 -195774367 - L1MC4 LINE L1 -650 7392 7273 2117 88 7 19 chr5 7314197 7314505 -195771027 - AluSq SINE Alu -9 304 1 1061 179 19 93 chr5 7314538 7314862 -195770670 + AluJo SINE Alu 3 302 0 419 127 0 0 chr5 7319109 7319164 -195766368 - AluSg/x SINE Alu -62 247 193 911 192 124 1 chr5 7319164 7319381 -195766151 + MLT1D LTR MaLR 234 503 -2 437 239 58 7 chr5 7319624 7319762 -195765770 + AluJb SINE Alu 2 146 -166 779 133 39 100 chr5 7320076 7320112 -195765420 - MER2 DNA MER2_type -117 228 191 1739 132 35 17 chr5 7320112 7320400 -195765132 + AluJo SINE Alu 1 293 -19 779 133 39 100 chr5 7320400 7320543 -195764989 - MER2 DNA MER2_type -154 191 60 908 145 7 14 chr5 7320842 7320987 -195764545 + MLT1A2 LTR MaLR 4 147 -227 242 158 18 53 chr5 7321002 7321059 -195764473 + MLT1A2 LTR MaLR 320 374 0 335 232 34 24 chr5 7322850 7322944 -195762588 + L1ME LINE L1 5691 5789 -381 1886 199 55 22 chr5 7322944 7323396 -195762136 + MLT1C LTR MaLR 1 467 0 335 232 34 24 chr5 7323396 7323468 -195762064 + L1ME LINE L1 5789 5859 -311 1511 141 26 30 chr5 7323475 7323744 -195761788 + AluJo SINE Alu 7 274 -38 290 88 62 12 chr5 7323747 7323827 -195761705 + (TTTA)n Simple_repeat Simple_repeat 1 84 0 303 188 188 0 chr5 7324371 7324451 -195761081 - MER21A LTR ERV1 -2 929 835 420 147 0 0 chr5 7325251 7325326 -195760206 + (CA)n Simple_repeat Simple_repeat 2 76 0 1239 91 0 0 chr5 7325329 7325504 -195760028 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 237 125 14 139 chr5 7325747 7325819 -195759713 + MLT2B1 LTR ERVL 458 520 0 2192 114 0 7 chr5 7325929 7326236 -195759296 - AluSx SINE Alu -7 305 1 2119 79 14 0 chr5 7326298 7326588 -195758944 - AluY SINE Alu -17 294 1 1205 102 41 5 chr5 7326588 7326784 -195758748 - AluSg/x SINE Alu -15 297 95 2047 267 86 22 chr5 7326927 7327313 -195758219 - L2 LINE L2 -198 3115 2755 1603 166 49 11 chr5 7327313 7327597 -195757935 + AluJo SINE Alu 1 295 -17 2047 267 86 22 chr5 7327597 7328057 -195757475 - L2 LINE L2 -558 2755 2214 2104 134 30 60 chr5 7328501 7328903 -195756629 - MLT1B LTR MaLR 0 390 1 2301 72 3 0 chr5 7328983 7329276 -195756256 - AluSp SINE Alu -19 294 1 929 183 107 0 chr5 7331478 7331675 -195753857 - MER2 DNA MER2_type -118 227 10 347 239 142 45 chr5 7332496 7332651 -195752881 + MIR SINE MIR 6 175 -87 1491 55 50 15 chr5 7334283 7334483 -195751049 + AluSq SINE Alu 86 292 -21 289 269 39 62 chr5 7335402 7335532 -195750000 + MIR3 SINE MIR 15 141 -67 21 36 0 0 chr5 7336277 7336305 -195749227 + AT_rich Low_complexity Low_complexity 1 28 0 1967 116 42 11 chr5 7337391 7337675 -195747857 + AluSq SINE Alu 1 293 -20 237 208 198 31 chr5 7338651 7338747 -195746785 - L2 LINE L2 -2833 481 370 257 173 19 0 chr5 7341778 7341830 -195743702 + MER4-int LTR ERV1 1104 1156 -5442 1032 156 0 0 chr5 7341831 7342011 -195743521 + (TG)n Simple_repeat Simple_repeat 1 180 0 4610 161 48 9 chr5 7343575 7344437 -195741095 + MER54A LTR ERVL 1 895 -6 231 217 0 0 chr5 7344441 7344487 -195741045 + MIR SINE MIR 102 147 -115 25 31 0 0 chr5 7345284 7345316 -195740216 + AT_rich Low_complexity Low_complexity 1 32 0 526 197 66 7 chr5 7345566 7345703 -195739829 - L1MB3 LINE L1 -99 6084 5940 2408 92 0 0 chr5 7345705 7345999 -195739533 + AluSg SINE Alu 1 294 -16 2222 111 53 42 chr5 7345999 7346359 -195739173 - THE1B LTR MaLR 0 364 1 282 261 123 15 chr5 7348739 7348869 -195736663 + L2 LINE L2 2891 3034 -279 287 333 50 0 chr5 7348923 7349022 -195736510 + L2 LINE L2 3210 3313 0 1986 131 25 0 chr5 7349430 7349712 -195735820 - AluY SINE Alu -22 289 1 704 78 0 0 chr5 7352303 7352393 -195733139 + THE1C LTR MaLR 1 90 -285 1337 171 89 0 chr5 7352404 7352662 -195732870 + MER50 LTR ERV1 431 711 -23 1752 176 0 35 chr5 7353135 7353454 -195732078 - AluJb SINE Alu -4 308 1 273 293 53 30 chr5 7353555 7353688 -195731844 - MLT1I LTR MaLR -52 357 222 937 108 67 121 chr5 7353795 7353962 -195731570 - MER39B LTR ERV1 -1 652 500 1764 155 30 0 chr5 7353962 7354233 -195731299 - AluJo SINE Alu -22 290 12 937 108 67 121 chr5 7354233 7354305 -195731227 - MER39B LTR ERV1 -153 500 426 2363 82 10 0 chr5 7354590 7354883 -195730649 - AluSx SINE Alu -16 296 1 2007 143 3 10 chr5 7354957 7355281 -195730251 - AluSx SINE Alu 0 312 1 1974 129 7 7 chr5 7355823 7356117 -195729415 - AluSx SINE Alu -18 294 1 343 324 14 28 chr5 7356936 7357081 -195728451 + MIR SINE MIR 85 227 -35 719 222 81 0 chr5 7359816 7360001 -195725531 + Charlie1a DNA MER1_type 5 204 -1251 1643 164 28 11 chr5 7360027 7360313 -195725219 + AluJo SINE Alu 1 291 -21 942 155 263 11 chr5 7360314 7360592 -195724940 + Charlie1a DNA MER1_type 739 1086 -369 1397 168 16 29 chr5 7360607 7360851 -195724681 + AluJo SINE Alu 1 241 -71 3609 143 50 26 chr5 7360852 7360993 -195724539 - MER50 LTR ERV1 -23 711 575 2329 101 0 7 chr5 7360993 7361301 -195724231 + AluSx SINE Alu 1 306 -6 3609 143 50 26 chr5 7361301 7361853 -195723679 - MER50 LTR ERV1 -159 575 1 231 184 0 0 chr5 7361853 7361891 -195723641 + AluJo SINE Alu 238 275 -27 2424 183 99 3 chr5 7361997 7362571 -195722961 + L1MB8 LINE L1 5546 6174 -4 733 181 7 34 chr5 7362569 7362718 -195722814 + L1ME LINE L1 5421 5565 -601 * 344 229 172 19 chr5 7362894 7362972 -195722560 - LTR41 LTR ERVL -592 181 116 180 0 0 0 chr5 7362972 7362992 -195722540 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 344 229 172 19 chr5 7362992 7363070 -195722462 - LTR41 LTR ERVL -657 116 1 2382 109 3 0 chr5 7363245 7363557 -195721975 - AluSq SINE Alu 0 313 1 2114 73 48 0 chr5 7363748 7364042 -195721490 - AluSp SINE Alu 0 307 1 1486 146 108 0 chr5 7364390 7364658 -195720874 - AluSx SINE Alu -15 297 1 249 111 0 0 chr5 7364864 7364900 -195720632 + L1MC3 LINE L1 7238 7273 -512 3006 119 13 0 chr5 7364904 7365356 -195720176 - LTR3b LTR ERVK 0 500 43 1072 235 15 8 chr5 7365489 7365748 -195719784 + MLT1F1 LTR MaLR 266 526 -41 1795 183 64 43 chr5 7365748 7365767 -195719765 + MER74A LTR ERVL 1 18 -540 2237 131 3 6 chr5 7365767 7366079 -195719453 - AluSx SINE Alu -1 311 1 1795 183 64 43 chr5 7366079 7366245 -195719287 + MER74A LTR ERVL 18 179 -379 1892 146 58 18 chr5 7366245 7366575 -195718957 - MER61A LTR ERV1 0 343 1 1795 183 64 43 chr5 7366575 7366826 -195718706 + MER74A LTR ERVL 179 447 -111 2396 84 0 31 chr5 7366827 7367147 -195718385 - AluSg SINE Alu 0 310 1 1070 255 125 22 chr5 7367147 7367516 -195718016 + L2 LINE L2 1818 2224 -1090 1839 109 0 0 chr5 7367524 7367762 -195717770 + AluSx SINE Alu 56 293 -19 348 233 144 70 chr5 7368142 7368430 -195717102 - MLT1A2 LTR MaLR 0 390 69 2155 130 10 0 chr5 7369620 7369920 -195715612 + AluSx SINE Alu 1 303 -9 1298 191 73 31 chr5 7369921 7370276 -195715256 - Charlie5 DNA MER1_type -268 2344 1975 2304 99 10 0 chr5 7370282 7370584 -195714948 - AluSx SINE Alu -7 305 1 337 261 45 9 chr5 7370586 7370697 -195714835 - Charlie5 DNA MER1_type -2464 148 34 410 180 72 18 chr5 7370799 7370910 -195714622 + LTR34 LTR ERV1 1 117 -547 875 214 99 97 chr5 7370988 7371454 -195714078 + LTR34 LTR ERV1 137 695 -4 2826 101 0 5 chr5 7371986 7372363 -195713169 + THE1C LTR MaLR 1 375 0 263 238 60 24 chr5 7372549 7372633 -195712899 - MLT1L LTR MaLR -2 613 527 307 170 0 0 chr5 7373224 7373277 -195712255 + MER50 LTR ERV1 1 53 -681 616 278 70 15 chr5 7373409 7373668 -195711864 + MSTC-int LTR MaLR 329 601 -770 276 125 0 0 chr5 7373668 7373708 -195711824 - MSTA LTR MaLR 0 428 389 1632 160 0 30 chr5 7373708 7373971 -195711561 + AluJo SINE Alu 1 255 -57 1485 177 4 8 chr5 7373980 7374229 -195711303 - AluJb SINE Alu -43 269 22 943 128 20 71 chr5 7374246 7374442 -195711090 - MSTB LTR MaLR -240 186 1 259 314 154 6 chr5 7374681 7374850 -195710682 + MSTC-int LTR MaLR 692 885 -486 1701 142 0 73 chr5 7374878 7375180 -195710352 - AluJb SINE Alu -32 280 1 470 243 121 0 chr5 7375394 7375534 -195709998 + MSTC-int LTR MaLR 1215 1371 0 2360 151 78 2 chr5 7375667 7376065 -195709467 + MSTC LTR MaLR 1 428 0 387 197 197 59 chr5 7376181 7376333 -195709199 - MIR SINE MIR -80 182 10 1648 158 27 7 chr5 7376811 7377103 -195708429 - AluJb SINE Alu -14 298 1 816 168 0 45 chr5 7377558 7377713 -195707819 + AluJo SINE Alu 11 158 -154 1924 123 3 48 chr5 7377741 7378051 -195707481 + AluSx SINE Alu 1 296 -16 2048 141 7 0 chr5 7378439 7378736 -195706796 - AluSx SINE Alu -11 301 3 541 198 100 23 chr5 7378807 7379057 -195706475 + MLT1D LTR MaLR 39 325 -142 1805 111 131 8 chr5 7379057 7379408 -195706124 + MSTA LTR MaLR 1 394 -34 1180 111 7 0 chr5 7379409 7379562 -195705970 - AluSp SINE Alu -13 300 147 477 310 80 2 chr5 7380017 7380285 -195705247 + L1MB8 LINE L1 5858 6161 -5 265 205 21 28 chr5 7380439 7380690 -195704842 + CT-rich Low_complexity Low_complexity 1 249 0 210 37 0 0 chr5 7381515 7381542 -195703990 + (TC)n Simple_repeat Simple_repeat 1 27 0 587 184 0 6 chr5 7381542 7381648 -195703884 + (CA)n Simple_repeat Simple_repeat 2 108 -71 212 0 36 0 chr5 7381648 7381676 -195703856 + (TC)n Simple_repeat Simple_repeat 1 29 0 587 184 0 6 chr5 7381676 7381748 -195703784 + (CA)n Simple_repeat Simple_repeat 108 179 0 2152 112 11 0 chr5 7381909 7382196 -195703336 - AluSx SINE Alu -18 294 5 499 176 84 8 chr5 7382298 7382429 -195703103 + LTR37A LTR ERV1 286 426 0 273 302 9 35 chr5 7382690 7382806 -195702726 + G-rich Low_complexity Low_complexity 3 115 0 4588 137 58 33 chr5 7384897 7385805 -195699727 + pTR5 LTR ERV1 742 1672 -766 399 239 0 0 chr5 7385905 7385993 -195699539 + MLT1D LTR MaLR 418 505 0 2071 115 0 37 chr5 7386066 7386362 -195699170 + AluSx SINE Alu 4 288 -24 3933 170 9 58 chr5 7386390 7387149 -195698383 + MER72 LTR ERV1 1 722 0 316 224 90 14 chr5 7387979 7388168 -195697364 + L1MC5 LINE L1 7278 7414 -394 260 156 0 0 chr5 7388168 7388213 -195697319 - MLT1F1 LTR MaLR 0 567 523 780 193 76 0 chr5 7388240 7388411 -195697121 - MLT1F1 LTR MaLR -362 205 22 1845 112 18 29 chr5 7388411 7388687 -195696845 + AluSx SINE Alu 1 273 -39 858 98 196 12 chr5 7388808 7388971 -195696561 + pTR5 LTR ERV1 1833 2025 -413 278 210 30 40 chr5 7388971 7389071 -195696461 + LTR30 LTR ERV1 544 642 -80 2274 95 9 0 chr5 7389071 7389398 -195696134 + pTR5 LTR ERV1 66 395 -2043 786 231 61 47 chr5 7391086 7391298 -195694234 - MIR SINE MIR 0 262 48 531 234 148 65 chr5 7391949 7392239 -195693293 - L1MC5 LINE L1 -23 7938 7625 445 233 6 69 chr5 7393213 7393372 -195692160 - MER20 DNA MER1_type -53 166 18 25 51 0 0 chr5 7394911 7394950 -195690582 + AT_rich Low_complexity Low_complexity 1 39 0 207 0 0 0 chr5 7394976 7394999 -195690533 + (TATG)n Simple_repeat Simple_repeat 4 26 0 231 36 0 0 chr5 7395757 7395785 -195689747 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 462 143 0 0 chr5 7396266 7396343 -195689189 + (A)n Simple_repeat Simple_repeat 1 77 0 195 100 0 0 chr5 7398164 7398194 -195687338 + (CCCG)n Simple_repeat Simple_repeat 3 32 0 777 122 0 0 chr5 7398670 7398785 -195686747 + MER4D LTR ERV1 1 115 -788 1364 146 35 22 chr5 7398785 7399011 -195686521 + AluSx SINE Alu 1 229 -83 4062 148 32 37 chr5 7399035 7399840 -195685692 + MER4D LTR ERV1 103 903 0 309 277 27 20 chr5 7399851 7399999 -195685533 - LTR37A LTR ERV1 0 426 278 2272 179 56 99 chr5 7400025 7400497 -195685035 + MER72 LTR ERV1 15 451 -271 1725 166 0 30 chr5 7400497 7400792 -195684740 + AluJo SINE Alu 1 286 -26 2272 179 56 99 chr5 7400792 7400982 -195684550 + MER72 LTR ERV1 451 648 -74 398 190 86 17 chr5 7401420 7401536 -195683996 - LTR37A LTR ERV1 -295 131 8 1432 7 7 0 chr5 7401974 7402129 -195683403 - AluY SINE Alu -155 156 1 469 178 164 48 chr5 7402679 7402825 -195682707 + FRAM SINE Alu 1 162 -14 288 143 20 19 chr5 7403468 7403520 -195682012 + FRAM/FAM SINE Alu 16 63 -103 279 79 0 0 chr5 7403635 7403673 -195681859 + (TG)n Simple_repeat Simple_repeat 1 38 0 254 282 0 14 chr5 7403823 7403894 -195681638 + (TG)n Simple_repeat Simple_repeat 1 70 0 317 202 110 0 chr5 7404268 7404348 -195681184 - AluJ/FLAM SINE Alu -214 88 9 201 74 0 0 chr5 7404360 7404387 -195681145 + (CTCA)n Simple_repeat Simple_repeat 1 27 0 216 0 0 0 chr5 7404517 7404541 -195680991 + (TTAG)n Simple_repeat Simple_repeat 1 24 0 523 209 104 31 chr5 7404552 7404715 -195680817 - AluJb SINE Alu -2 310 136 689 166 92 18 chr5 7405529 7405692 -195679840 - FRAM SINE Alu -2 174 1 326 117 11 96 chr5 7406962 7407056 -195678476 + AluS SINE Alu 1 86 -217 275 235 81 12 chr5 7407815 7407922 -195677610 + AluJo SINE Alu 121 204 -98 484 347 0 0 chr5 7408724 7409025 -195676507 + (CA)n Simple_repeat Simple_repeat 1 301 0 285 36 36 36 chr5 7409280 7409336 -195676196 + (TTTTTG)n Simple_repeat Simple_repeat 5 60 0 186 174 0 0 chr5 7409650 7409696 -195675836 + (CA)n Simple_repeat Simple_repeat 1 46 0 919 279 54 56 chr5 7411062 7411152 -195674380 - MLT1I LTR MaLR 0 409 320 1672 139 12 90 chr5 7411152 7411371 -195674161 + AluJo SINE Alu 1 189 -123 1900 138 26 20 chr5 7411371 7411675 -195673857 - AluSx SINE Alu -6 306 1 1672 139 12 90 chr5 7411675 7411778 -195673754 + AluJo SINE Alu 189 298 -14 919 279 54 56 chr5 7411778 7412095 -195673437 - MLT1I LTR MaLR -89 320 3 1861 206 61 41 chr5 7412290 7412849 -195672683 - L1ME1 LINE L1 0 6166 5597 345 249 63 79 chr5 7412857 7412897 -195672635 - L1ME1 LINE L1 -2312 5473 5434 1945 155 3 10 chr5 7412897 7413206 -195672326 - AluJo SINE Alu -4 308 2 345 249 63 79 chr5 7413206 7413230 -195672302 - L1ME1 LINE L1 -2351 5434 5411 582 120 56 9 chr5 7413230 7413338 -195672194 - L1MB3 LINE L1 -4 6179 6067 345 249 63 79 chr5 7413338 7413461 -195672071 - L1ME1 LINE L1 -2374 5411 5288 226 192 0 19 chr5 7413511 7413563 -195671969 + L1M LINE L1 5310 5360 -804 243 280 220 38 chr5 7414011 7414143 -195671389 + MIR SINE MIR 82 237 -25 2213 99 74 42 chr5 7414143 7414496 -195671036 - THE1B LTR MaLR 0 364 1 735 252 52 0 chr5 7414667 7414822 -195670710 + AluJo SINE Alu 13 175 -137 818 198 99 11 chr5 7415445 7415708 -195669824 - Charlie1b DNA MER1_type -129 394 109 961 198 6 0 chr5 7415719 7415891 -195669641 + FRAM SINE Alu 1 173 -3 302 146 0 0 chr5 7416672 7416720 -195668812 - AluSp SINE Alu -122 181 134 31 20 0 20 chr5 7417060 7417078 -195668454 + AT_rich Low_complexity Low_complexity 1 18 -30 2313 101 0 0 chr5 7417078 7417374 -195668158 + AluSx SINE Alu 1 296 -16 31 20 0 20 chr5 7417374 7417404 -195668128 + AT_rich Low_complexity Low_complexity 18 48 0 2216 119 39 18 chr5 7417516 7417904 -195667628 - L1PB3 LINE L1 -74 6080 5685 250 232 295 11 chr5 7418926 7419021 -195666511 + MIR SINE MIR 32 153 -55 2255 125 0 3 chr5 7419101 7419406 -195666126 + AluJb SINE Alu 9 312 0 1870 168 3 16 chr5 7419494 7419626 -195665906 + AluJo SINE Alu 1 133 -179 2253 104 7 7 chr5 7419626 7419924 -195665608 + AluSg SINE Alu 1 298 -12 1870 168 3 16 chr5 7419924 7420106 -195665426 + AluJo SINE Alu 133 311 -1 2193 144 34 3 chr5 7420309 7420664 -195664868 - MER47A DNA MER2_type 0 366 1 1896 121 57 3 chr5 7421315 7421597 -195663935 - AluSx SINE Alu -15 297 1 2404 84 0 3 chr5 7421985 7422281 -195663251 - AluSg SINE Alu -13 297 3 1962 152 13 3 chr5 7422289 7422592 -195662940 - AluJb SINE Alu -6 306 1 565 191 45 0 chr5 7422974 7423084 -195662448 + FRAM SINE Alu 57 171 -5 259 239 146 15 chr5 7423092 7423222 -195662310 - MLT1F-int LTR MaLR -1221 150 4 981 261 105 51 chr5 7423234 7423545 -195661987 - MLT1F LTR MaLR 0 542 249 201 108 0 0 chr5 7423545 7423582 -195661950 + (CA)n Simple_repeat Simple_repeat 2 38 0 981 261 105 51 chr5 7423582 7423658 -195661874 - MLT1F LTR MaLR -293 249 179 2207 107 52 50 chr5 7423658 7423755 -195661777 + THE1B LTR MaLR 1 96 -268 2246 108 3 3 chr5 7423755 7424050 -195661482 - AluSq SINE Alu -18 295 1 2207 107 52 50 chr5 7424050 7424315 -195661217 + THE1B LTR MaLR 96 364 0 981 261 105 51 chr5 7424315 7424440 -195661092 - MLT1F LTR MaLR -363 179 1 400 264 174 28 chr5 7424441 7424619 -195660913 + L1MC4 LINE L1 7839 8042 0 1182 134 31 76 chr5 7425369 7425592 -195659940 + AluJb SINE Alu 86 298 -14 1310 131 149 62 chr5 7425797 7425835 -195659697 - MLT1A1 LTR MaLR 0 365 332 2093 121 0 0 chr5 7425835 7426151 -195659381 + AluSx SINE Alu 1 316 0 1310 131 149 62 chr5 7426151 7426447 -195659085 - MLT1A1 LTR MaLR -33 332 1 454 208 10 10 chr5 7426489 7426585 -195658947 + MLT2F LTR ERVL 1 96 -567 2316 108 0 22 chr5 7426712 7427028 -195658504 + AluSx SINE Alu 1 309 -3 948 163 7 13 chr5 7427033 7427229 -195658303 + FRAM SINE Alu 1 176 0 206 173 37 62 chr5 7427323 7427404 -195658128 + CT-rich Low_complexity Low_complexity 4 82 0 444 238 0 5 chr5 7429504 7429714 -195655818 + (CA)n Simple_repeat Simple_repeat 1 208 0 534 79 0 0 chr5 7430178 7430254 -195655278 + (CA)n Simple_repeat Simple_repeat 1 76 0 239 79 26 0 chr5 7430368 7430406 -195655126 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 456 19 0 0 chr5 7431926 7431979 -195653553 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 379 331 42 13 chr5 7432151 7432429 -195653103 + L1M2 LINE L1 2786 3321 -4245 201 169 62 46 chr5 7432655 7432720 -195652812 - MIR3 SINE MIR -142 66 1 267 282 3 52 chr5 7434183 7434367 -195651165 + CT-rich Low_complexity Low_complexity 4 290 0 305 206 72 21 chr5 7438157 7438254 -195647278 + AluSg SINE Alu 2 103 -197 808 161 20 16 chr5 7438294 7438547 -195646985 + GA-rich Low_complexity Low_complexity 1 254 0 277 247 59 18 chr5 7439138 7439266 -195646266 - L1MA4A LINE L1 -349 5953 5821 244 231 0 0 chr5 7439266 7439318 -195646214 + MLT2B3 LTR ERVL 3 54 -500 243 0 0 0 chr5 7439607 7439634 -195645898 + (GTTTG)n Simple_repeat Simple_repeat 3 29 0 740 272 43 66 chr5 7440201 7440891 -195644641 - L1MA5 LINE L1 -369 5931 5265 377 320 20 20 chr5 7440934 7441087 -195644445 - L1MA5 LINE L1 -1020 5126 4974 232 300 11 33 chr5 7441468 7441558 -195643974 + CT-rich Low_complexity Low_complexity 5 92 0 578 14 14 0 chr5 7441586 7441657 -195643875 + (TTC)n Simple_repeat Simple_repeat 3 74 0 234 0 0 0 chr5 7441657 7441683 -195643849 + (TC)n Simple_repeat Simple_repeat 2 27 0 293 217 9 70 chr5 7442196 7442311 -195643221 + (GGGTG)n Simple_repeat Simple_repeat 4 111 0 444 77 0 0 chr5 7442462 7442527 -195643005 + (CA)n Simple_repeat Simple_repeat 2 66 0 521 160 9 0 chr5 7442584 7442690 -195642842 + CT-rich Low_complexity Low_complexity 4 110 0 550 203 17 34 chr5 7442835 7442953 -195642579 - FLAM_A SINE Alu -18 124 9 278 316 79 34 chr5 7442971 7443237 -195642295 - L1M4 LINE L1 -2885 3261 2984 317 255 71 50 chr5 7443328 7443469 -195642063 - L1M4 LINE L1 -3223 2923 2780 242 250 0 0 chr5 7443541 7443597 -195641935 + FLAM_A SINE Alu 41 96 -37 620 297 38 18 chr5 7444224 7444471 -195641061 - L1MA5A LINE L1 -382 5918 5665 209 256 64 26 chr5 7445072 7445150 -195640382 + MIR SINE MIR 58 138 -124 447 106 0 0 chr5 7445807 7445873 -195639659 + (TTC)n Simple_repeat Simple_repeat 2 67 0 1546 93 5 14 chr5 7446131 7446346 -195639186 + AluSg/x SINE Alu 99 311 -1 833 233 83 97 chr5 7446351 7446505 -195639027 + L1ME1 LINE L1 5674 5829 -337 2385 91 0 25 chr5 7446505 7446824 -195638708 - AluY SINE Alu 0 311 1 833 233 83 97 chr5 7446824 7447143 -195638389 + L1ME1 LINE L1 5829 6134 -32 705 151 19 0 chr5 7447144 7447250 -195638282 + FLAM_C SINE Alu 2 109 -34 1766 171 0 16 chr5 7447322 7447632 -195637900 - AluJo SINE Alu 0 312 8 1693 132 4 0 chr5 7448095 7448330 -195637202 - AluSq SINE Alu -14 299 64 799 231 19 37 chr5 7448614 7449009 -195636523 - MLT1H LTR MaLR 0 549 30 204 217 0 0 chr5 7449741 7449787 -195635745 + L2 LINE L2 2911 2956 -316 233 333 0 0 chr5 7450933 7451005 -195634527 + L2 LINE L2 2902 2973 -299 2106 200 72 4 chr5 7451404 7451878 -195633654 + L1MB8 LINE L1 5581 6086 -92 2051 115 6 32 chr5 7451991 7452303 -195633229 - AluY SINE Alu -3 308 5 29 47 0 0 chr5 7453423 7453466 -195632066 + AT_rich Low_complexity Low_complexity 1 43 0 1933 186 38 53 chr5 7453466 7453589 -195631943 + MLT1D LTR MaLR 1 124 -381 2153 101 10 10 chr5 7453589 7453609 -195631923 - AluSx SINE Alu -13 299 280 189 0 0 0 chr5 7453609 7453630 -195631902 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2153 101 10 10 chr5 7453630 7453907 -195631625 - AluSx SINE Alu -31 281 2 1933 186 38 53 chr5 7453907 7454288 -195631244 + MLT1D LTR MaLR 124 497 -8 908 242 54 0 chr5 7454472 7454695 -195630837 + L1MC4 LINE L1 6800 7034 -1008 1234 156 0 0 chr5 7454708 7454881 -195630651 - AluSq SINE Alu -140 173 1 1924 226 66 20 chr5 7454914 7455507 -195630025 + L1MC4 LINE L1 7043 7662 -380 192 40 0 0 chr5 7455525 7455550 -195629982 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1241 161 89 67 chr5 7455553 7455628 -195629904 + L1MB4 LINE L1 5811 5883 -297 1226 176 146 23 chr5 7455628 7455889 -195629643 + AluSg1 SINE Alu 2 294 -15 2235 115 3 13 chr5 7455891 7456204 -195629328 + AluSx SINE Alu 3 312 0 1241 161 89 67 chr5 7456204 7456486 -195629046 + L1MB4 LINE L1 5883 6179 -1 995 168 35 107 chr5 7456528 7456635 -195628897 + L1MC4 LINE L1 7709 7822 -220 810 65 28 0 chr5 7456635 7456742 -195628790 + HY1 scRNA scRNA 2 111 -1 995 168 35 107 chr5 7456742 7456755 -195628777 + L1MC4 LINE L1 7822 7834 -208 207 114 0 0 chr5 7456755 7456790 -195628742 + (TG)n Simple_repeat Simple_repeat 2 36 0 995 168 35 107 chr5 7456790 7456806 -195628726 + L1MC4 LINE L1 7834 7850 -192 2428 99 0 0 chr5 7456806 7457109 -195628423 + AluSx SINE Alu 1 303 -9 995 168 35 107 chr5 7457109 7457315 -195628217 + L1MC4 LINE L1 7850 8028 -14 3177 73 22 44 chr5 7457625 7458079 -195627453 + MLT2A1 LTR ERVL 1 444 0 766 235 105 17 chr5 7458174 7458468 -195627064 + L1ME3 LINE L1 5843 6162 0 1784 195 35 0 chr5 7459126 7459495 -195626037 - MER89 LTR ERV1 0 559 178 1087 51 0 101 chr5 7459948 7460543 -195624989 + (ACTG)n Simple_repeat Simple_repeat 1 705 0 287 208 0 0 chr5 7463471 7463524 -195622008 - PMER1 DNA MER1_type -37 53 1 189 74 0 0 chr5 7463868 7463895 -195621637 + (CA)n Simple_repeat Simple_repeat 2 28 0 198 253 44 33 chr5 7463901 7463992 -195621540 + L2 LINE L2 2191 2282 -1032 409 233 117 0 chr5 7466281 7466384 -195619148 + FLAM_A SINE Alu 1 115 -18 210 300 154 18 chr5 7466705 7466815 -195618717 + L2 LINE L2 3004 3128 -185 313 272 88 14 chr5 7467416 7467563 -195617969 + FRAM SINE Alu 8 165 -1 441 307 0 7 chr5 7467568 7467705 -195617827 - MLT1B LTR MaLR -218 172 37 231 213 44 48 chr5 7468533 7468601 -195616931 + MIR SINE MIR 1 66 -142 234 91 0 0 chr5 7468820 7468853 -195616679 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 291 175 0 0 chr5 7469849 7469906 -195615626 + CT-rich Low_complexity Low_complexity 1 57 0 256 236 5 169 chr5 7470071 7470266 -195615266 + L1MB1 LINE L1 5429 5591 -587 195 69 0 0 chr5 7470610 7470639 -195614893 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 261 269 0 0 chr5 7471236 7471303 -195614229 + L1MB1 LINE L1 5850 5916 -252 181 219 266 0 chr5 7471326 7471390 -195614142 - L2 LINE L2 -1813 1501 1421 288 250 130 0 chr5 7471512 7471604 -195613928 + AluJb SINE Alu 2 105 -197 288 0 0 0 chr5 7472824 7472856 -195612676 + (TC)n Simple_repeat Simple_repeat 1 32 0 255 140 0 0 chr5 7472856 7472906 -195612626 + (CA)n Simple_repeat Simple_repeat 2 51 0 500 174 128 58 chr5 7473941 7474113 -195611419 + AluJo SINE Alu 123 306 -6 206 241 23 23 chr5 7475154 7475241 -195610291 + GA-rich Low_complexity Low_complexity 3 89 0 473 196 114 44 chr5 7475957 7476115 -195609417 + FRAM SINE Alu 1 168 -8 180 0 0 0 chr5 7479215 7479235 -195606297 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 199 220 51 51 chr5 7479337 7479396 -195606136 - MIR SINE MIR -198 64 6 321 26 0 0 chr5 7480016 7480054 -195605478 + (GGA)n Simple_repeat Simple_repeat 3 40 0 234 164 0 0 chr5 7480853 7480908 -195604624 + T-rich Low_complexity Low_complexity 1 55 0 205 132 53 0 chr5 7481779 7481817 -195603715 + (TGGG)n Simple_repeat Simple_repeat 4 43 0 217 241 35 17 chr5 7481958 7482074 -195603458 + (CACAA)n Simple_repeat Simple_repeat 2 119 0 182 62 31 0 chr5 7482184 7482216 -195603316 + (CA)n Simple_repeat Simple_repeat 2 34 0 486 203 0 0 chr5 7482749 7482867 -195602665 + (TG)n Simple_repeat Simple_repeat 1 118 0 414 0 0 0 chr5 7483812 7483858 -195601674 + (CAG)n Simple_repeat Simple_repeat 3 48 0 261 231 115 26 chr5 7484393 7484471 -195601061 + FLAM_A SINE Alu 37 121 -12 295 270 27 72 chr5 7484550 7484661 -195600871 - FLAM_A SINE Alu -14 119 14 320 43 22 0 chr5 7485043 7485089 -195600443 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 237 65 0 0 chr5 7488142 7488173 -195597359 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 21 57 0 0 chr5 7489739 7489774 -195595758 + AT_rich Low_complexity Low_complexity 1 35 0 717 157 108 69 chr5 7490951 7491155 -195594377 - AluJo SINE Alu -92 220 9 543 81 0 0 chr5 7491940 7492026 -195593506 + (TG)n Simple_repeat Simple_repeat 2 87 0 259 237 118 0 chr5 7493002 7493089 -195592443 + FLAM_A SINE Alu 24 108 -25 378 0 0 0 chr5 7493939 7493981 -195591551 + (TG)n Simple_repeat Simple_repeat 2 43 0 397 267 55 17 chr5 7494619 7494823 -195590709 - L1 LINE L1 -2447 3699 3492 575 163 8 0 chr5 7497430 7497553 -195587979 + (CA)n Simple_repeat Simple_repeat 1 124 0 276 200 0 0 chr5 7497583 7497648 -195587884 + (CA)n Simple_repeat Simple_repeat 1 65 0 357 159 0 0 chr5 7497815 7497878 -195587654 + (TCTCTG)n Simple_repeat Simple_repeat 1 63 0 195 217 0 67 chr5 7498758 7498818 -195586714 - MIR3 SINE MIR -142 66 11 261 222 74 0 chr5 7499288 7499369 -195586163 - MLT2A2 LTR ERVL 0 453 367 215 231 0 0 chr5 7500024 7500063 -195585469 + (TG)n Simple_repeat Simple_repeat 2 40 0 210 37 0 0 chr5 7500695 7500722 -195584810 + (CA)n Simple_repeat Simple_repeat 2 28 0 221 228 38 19 chr5 7500836 7500994 -195584538 + (CATA)n Simple_repeat Simple_repeat 4 164 0 198 0 0 0 chr5 7501563 7501585 -195583947 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 368 323 78 6 chr5 7501630 7501797 -195583735 - L1M4 LINE L1 -2562 3584 3406 666 278 81 62 chr5 7502904 7503274 -195582258 - L1M4 LINE L1 -2882 3264 2888 208 227 23 0 chr5 7503274 7503318 -195582214 + CT-rich Low_complexity Low_complexity 2 46 0 790 257 9 4 chr5 7504834 7505060 -195580472 - L1MA3 LINE L1 -375 5930 5704 339 145 0 0 chr5 7506975 7507044 -195578488 + (CA)n Simple_repeat Simple_repeat 2 70 0 626 174 90 30 chr5 7507241 7507408 -195578124 + FRAM SINE Alu 1 176 0 207 253 12 24 chr5 7509041 7509124 -195576408 + (TA)n Simple_repeat Simple_repeat 1 82 0 246 81 0 0 chr5 7509171 7509208 -195576324 + (CA)n Simple_repeat Simple_repeat 2 38 0 180 233 50 50 chr5 7509349 7509409 -195576123 + MIR SINE MIR 6 65 -197 30 27 0 0 chr5 7509498 7509535 -195575997 + AT_rich Low_complexity Low_complexity 1 37 0 462 18 0 0 chr5 7510724 7510779 -195574753 + (CACAC)n Simple_repeat Simple_repeat 2 56 0 258 308 0 0 chr5 7511635 7511700 -195573832 + (TG)n Simple_repeat Simple_repeat 2 66 0 411 246 70 18 chr5 7511848 7511962 -195573570 - FLAM_C SINE Alu -10 123 4 265 326 62 16 chr5 7511965 7512094 -195573438 - MIR SINE MIR -113 149 15 261 326 0 12 chr5 7512542 7512628 -195572904 + GA-rich Low_complexity Low_complexity 1 85 0 306 0 0 0 chr5 7514033 7514067 -195571465 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 447 151 108 11 chr5 7514620 7514713 -195570819 - AluSq/x SINE Alu -208 105 4 309 244 109 52 chr5 7515567 7515760 -195569772 + L1MA9 LINE L1 6109 6312 0 203 303 0 15 chr5 7516061 7516127 -195569405 + (CA)n Simple_repeat Simple_repeat 1 65 0 303 28 0 0 chr5 7518198 7518234 -195567298 + (CCTG)n Simple_repeat Simple_repeat 4 39 0 537 162 89 115 chr5 7518628 7518819 -195566713 + AluJo SINE Alu 127 312 0 207 359 0 0 chr5 7519167 7519231 -195566301 + (TG)n Simple_repeat Simple_repeat 1 64 0 342 0 0 0 chr5 7519665 7519703 -195565829 + (TG)n Simple_repeat Simple_repeat 2 39 0 357 229 86 9 chr5 7519715 7519820 -195565712 - FLAM_C SINE Alu -20 113 1 319 247 142 25 chr5 7520502 7520664 -195564868 + AluJo SINE Alu 120 300 -2 204 40 0 0 chr5 7520964 7520989 -195564543 + (TG)n Simple_repeat Simple_repeat 1 25 0 24 32 0 0 chr5 7521366 7521397 -195564135 + AT_rich Low_complexity Low_complexity 1 31 0 195 100 0 0 chr5 7521930 7521960 -195563572 + (A)n Simple_repeat Simple_repeat 1 30 0 285 118 0 0 chr5 7522474 7522525 -195563007 + (T)n Simple_repeat Simple_repeat 1 51 0 378 0 0 0 chr5 7524574 7524616 -195560916 + (TG)n Simple_repeat Simple_repeat 1 42 0 302 0 26 0 chr5 7524615 7524653 -195560879 + (GA)n Simple_repeat Simple_repeat 1 39 0 * 255 114 0 0 chr5 7524652 7524696 -195560836 + (TG)n Simple_repeat Simple_repeat 2 45 0 * 192 40 0 0 chr5 7524726 7524738 -195560794 + (TG)n Simple_repeat Simple_repeat 1 37 0 192 40 0 0 chr5 7524738 7524763 -195560769 + (TG)n Simple_repeat Simple_repeat 1 25 0 302 304 136 75 chr5 7525107 7525482 -195560050 + HAL1 LINE L1 880 1277 -1230 1432 184 113 0 chr5 7525728 7525994 -195559538 - AluJo SINE Alu -16 296 1 310 193 36 72 chr5 7526897 7526980 -195558552 + L2 LINE L2 3230 3309 -4 707 245 179 25 chr5 7527101 7527509 -195558023 - L1MC4 LINE L1 -89 7953 7483 235 267 133 0 chr5 7528490 7528580 -195556952 - MIR SINE MIR -48 214 113 445 202 0 0 chr5 7528664 7528748 -195556784 + MER2 DNA MER2_type 1 84 -261 679 208 8 0 chr5 7528880 7529010 -195556522 + FLAM_A SINE Alu 1 131 -2 1977 115 10 20 chr5 7529090 7529386 -195556146 - AluSx SINE Alu -19 293 1 24 0 0 0 chr5 7529484 7529508 -195556024 + AT_rich Low_complexity Low_complexity 1 24 0 1299 122 0 0 chr5 7529798 7529978 -195555554 - AluSg/x SINE Alu -13 299 120 270 185 19 0 chr5 7530297 7530351 -195555181 + MER20 DNA MER1_type 159 213 -6 187 309 112 39 chr5 7530684 7530862 -195554670 - MIR SINE MIR -10 252 62 210 260 26 39 chr5 7531286 7531363 -195554169 + L2 LINE L2 2905 2980 -333 333 0 0 0 chr5 7532495 7532532 -195553000 + (T)n Simple_repeat Simple_repeat 1 37 0 609 243 47 42 chr5 7532839 7533053 -195552479 + MIR SINE MIR 18 232 -30 211 200 40 0 chr5 7533065 7533115 -195552417 - MIR SINE MIR -144 118 67 1706 117 58 21 chr5 7533147 7533438 -195552094 - AluSx SINE Alu -9 303 2 835 128 15 0 chr5 7533736 7533869 -195551663 + FRAM SINE Alu 18 152 -24 1719 143 4 19 chr5 7534818 7535076 -195550456 + AluJo SINE Alu 34 287 -25 1654 182 29 45 chr5 7535769 7535957 -195549575 + L1MB8 LINE L1 5757 5946 -232 2066 117 3 43 chr5 7535957 7536282 -195549250 - AluSx SINE Alu 0 312 1 1654 182 29 45 chr5 7536282 7536522 -195549010 + L1MB8 LINE L1 5946 6177 -1 1934 168 0 3 chr5 7536668 7536966 -195548566 - AluJb SINE Alu -15 297 1 2400 109 0 0 chr5 7536980 7537291 -195548241 - AluY SINE Alu 0 311 1 2027 147 13 7 chr5 7537500 7537800 -195547732 - AluJo SINE Alu -10 302 1 14169 121 30 35 chr5 7537843 7537883 -195547649 + Tigger1 DNA MER2_type 2 41 -2377 721 214 0 8 chr5 7537883 7538014 -195547518 - FLAM_A SINE Alu 0 133 4 14169 121 30 35 chr5 7538014 7538931 -195546601 + Tigger1 DNA MER2_type 41 961 -1457 2286 92 27 0 chr5 7538931 7539225 -195546307 - AluSg SINE Alu -8 302 1 14169 121 30 35 chr5 7539225 7540695 -195544837 + Tigger1 DNA MER2_type 961 2418 0 894 184 89 37 chr5 7541062 7541410 -195544122 + MLT1D LTR MaLR 1 441 -64 2376 94 3 3 chr5 7541410 7541718 -195543814 - AluSp SINE Alu -5 308 1 894 184 89 37 chr5 7541718 7541785 -195543747 + MLT1D LTR MaLR 441 503 -2 628 244 142 20 chr5 7541794 7541991 -195543541 - MIR SINE MIR -39 223 3 2487 60 3 25 chr5 7542171 7542486 -195543046 - AluY SINE Alu -3 308 1 24 0 0 0 chr5 7544118 7544142 -195541390 + AT_rich Low_complexity Low_complexity 1 24 0 721 169 90 39 chr5 7544358 7544536 -195540996 + Tigger2 DNA MER2_type 6 192 -2526 241 132 176 11 chr5 7544588 7544679 -195540853 - Tigger2 DNA MER2_type -152 2566 2461 3453 136 88 24 chr5 7544724 7545429 -195540103 - Tigger2 DNA MER2_type -1968 750 1 1103 172 43 0 chr5 7545429 7545636 -195539896 + MER2 DNA MER2_type 130 345 0 895 215 58 174 chr5 7545642 7545984 -195539548 + L2 LINE L2 2709 3042 -271 639 39 0 0 chr5 7545984 7546062 -195539470 + AluY SINE Alu 222 299 -11 895 215 58 174 chr5 7546062 7546306 -195539226 + L2 LINE L2 3042 3313 0 21 0 0 0 chr5 7546794 7546815 -195538717 + AT_rich Low_complexity Low_complexity 1 21 0 212 254 136 0 chr5 7546878 7546937 -195538595 + MIR3 SINE MIR 121 187 -21 22 0 0 0 chr5 7547299 7547321 -195538211 + AT_rich Low_complexity Low_complexity 1 22 0 2150 117 0 0 chr5 7547333 7547690 -195537842 + AluSx SINE Alu 1 357 0 665 286 106 0 chr5 7548180 7548407 -195537125 + MIR SINE MIR 6 256 -6 454 292 99 5 chr5 7548844 7549036 -195536496 + MIR SINE MIR 1 210 -52 22 94 0 0 chr5 7549861 7549925 -195535607 + GC_rich Low_complexity Low_complexity 1 64 0 842 165 0 122 chr5 7551505 7551693 -195533839 - FRAM SINE Alu -1 165 1 230 192 0 39 chr5 7552152 7552204 -195533328 - MIR SINE MIR 0 262 213 306 281 126 59 chr5 7552225 7552599 -195532933 - MLT1K LTR MaLR 0 588 190 1601 150 59 28 chr5 7552776 7552939 -195532593 - AluJb SINE Alu -17 295 118 183 42 0 0 chr5 7552939 7552963 -195532569 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1601 150 59 28 chr5 7552963 7553085 -195532447 - AluJb SINE Alu -194 118 1 324 0 0 0 chr5 7553133 7553169 -195532363 + (TG)n Simple_repeat Simple_repeat 2 37 0 2358 99 0 0 chr5 7553346 7553639 -195531893 - AluSg1 SINE Alu -16 293 1 700 218 179 29 chr5 7553642 7553950 -195531582 + L1MC4 LINE L1 7684 8037 -5 2050 121 24 13 chr5 7554330 7554628 -195530904 - AluSx SINE Alu -11 301 1 343 371 45 0 chr5 7554919 7555097 -195530435 + L1MEd LINE L1 452 637 -5482 288 0 0 0 chr5 7555153 7555185 -195530347 + (TG)n Simple_repeat Simple_repeat 1 32 0 310 224 135 13 chr5 7555298 7555454 -195530078 + Charlie2 DNA MER1_type 2671 2845 -17 369 305 48 0 chr5 7555529 7555634 -195529898 + L2 LINE L2 3202 3311 -2 365 265 55 105 chr5 7555975 7556195 -195529337 - L1MC4 LINE L1 -1 8041 5884 231 61 0 0 chr5 7556358 7556391 -195529141 + (CA)n Simple_repeat Simple_repeat 1 33 0 186 189 0 0 chr5 7556946 7556983 -195528549 + (CA)n Simple_repeat Simple_repeat 2 38 0 203 200 0 0 chr5 7559885 7559920 -195525612 + T-rich Low_complexity Low_complexity 1 35 0 225 286 0 24 chr5 7559922 7560006 -195525526 + (TATG)n Simple_repeat Simple_repeat 4 85 0 209 173 36 73 chr5 7560620 7560730 -195524802 + (CAGC)n Simple_repeat Simple_repeat 2 107 0 241 262 115 25 chr5 7561773 7561895 -195523637 - L1MA7 LINE L1 -32 6259 6127 422 246 29 22 chr5 7561913 7562051 -195523481 + L1MA7 LINE L1 5980 6118 -173 189 0 0 0 chr5 7563202 7563223 -195522309 + (TC)n Simple_repeat Simple_repeat 2 22 0 284 172 156 0 chr5 7563333 7563397 -195522135 - AluJb SINE Alu -189 113 40 207 0 0 0 chr5 7563596 7563619 -195521913 + (CA)n Simple_repeat Simple_repeat 2 24 0 253 270 14 14 chr5 7563966 7564040 -195521492 + (CA)n Simple_repeat Simple_repeat 1 74 0 289 179 137 51 chr5 7566793 7566910 -195518622 + AluSq/x SINE Alu 27 105 -197 226 203 34 0 chr5 7567359 7567418 -195518114 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 347 210 57 55 chr5 7567562 7567750 -195517782 + MLT1C LTR MaLR 114 304 -163 444 77 0 0 chr5 7568558 7568623 -195516909 + (CAGAC)n Simple_repeat Simple_repeat 5 69 0 189 0 0 0 chr5 7569519 7569540 -195515992 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 561 229 96 27 chr5 7570275 7570463 -195515069 + AluJo SINE Alu 10 210 -102 258 320 66 41 chr5 7570719 7570841 -195514691 + MIR3 SINE MIR 7 131 -77 702 35 0 0 chr5 7576140 7576225 -195509307 + (CCA)n Simple_repeat Simple_repeat 1 85 0 222 37 0 0 chr5 7576228 7576255 -195509277 + (CAACC)n Simple_repeat Simple_repeat 2 28 0 204 97 0 0 chr5 7576797 7576828 -195508704 + (CCTG)n Simple_repeat Simple_repeat 3 33 0 513 47 0 0 chr5 7576962 7577026 -195508506 + (TCC)n Simple_repeat Simple_repeat 3 66 0 234 0 0 0 chr5 7577426 7577452 -195508080 + (CA)n Simple_repeat Simple_repeat 1 26 0 637 145 127 54 chr5 7577467 7577633 -195507899 - FRAM SINE Alu 0 176 1 396 0 0 0 chr5 7580696 7580740 -195504792 + (TC)n Simple_repeat Simple_repeat 1 44 0 21 57 0 0 chr5 7581319 7581354 -195504178 + AT_rich Low_complexity Low_complexity 1 35 0 220 286 0 26 chr5 7581533 7581610 -195503922 + (TATG)n Simple_repeat Simple_repeat 4 78 0 464 180 7 127 chr5 7582512 7582662 -195502870 + FLAM_C SINE Alu 2 133 0 369 0 0 0 chr5 7583192 7583233 -195502299 + (TG)n Simple_repeat Simple_repeat 2 42 0 300 183 0 0 chr5 7683665 7683725 -195401807 + L1ME1 LINE L1 5613 5672 -494 5160 39 2 5 chr5 7683748 7684382 -195401150 + L1PA5 LINE L1 5523 6154 0 811 275 67 55 chr5 7684382 7684818 -195400714 + L1ME1 LINE L1 5652 6092 -74 287 230 143 8 chr5 7684748 7684874 -195400658 + L1MA10 LINE L1 6185 6327 -7 * 882 224 36 29 chr5 7685701 7685982 -195399550 - L1MC3 LINE L1 0 7785 7503 287 343 34 14 chr5 7686009 7686216 -195399316 - L3 LINE CR1 -188 1389 1179 190 382 0 0 chr5 7686567 7686618 -195398914 - L3 LINE CR1 -2 1575 1522 4226 95 2 0 chr5 7686618 7687209 -195398323 + L1PA13 LINE L1 5572 6163 0 190 382 0 0 chr5 7687209 7687225 -195398307 - L3 LINE CR1 -54 1523 1508 2172 216 16 26 chr5 7687867 7688372 -195397160 - MER89 LTR ERV1 0 559 60 180 135 0 0 chr5 7689170 7689207 -195396325 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 640 264 146 59 chr5 7689434 7689908 -195395624 - LTR33A LTR ERVL -2 521 7 380 197 0 0 chr5 7690860 7690931 -195394601 + L1MC3 LINE L1 7232 7302 -483 257 105 0 0 chr5 7690931 7690969 -195394563 + Alu SINE Alu 1 38 -264 1558 143 13 0 chr5 7690969 7691207 -195394325 + AluSg/x SINE Alu 69 309 -1 210 71 0 0 chr5 7691209 7691237 -195394295 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 1120 197 0 13 chr5 7691237 7691470 -195394062 + L1MC3 LINE L1 7297 7526 -259 645 237 6 6 chr5 7692442 7692615 -195392917 + L1MA10 LINE L1 6161 6333 -1 2068 249 61 5 chr5 7693370 7693945 -195391587 + MLT1E2 LTR MaLR 13 619 -7 28 78 0 29 chr5 7694260 7694363 -195391169 + AT_rich Low_complexity Low_complexity 1 100 0 535 54 14 0 chr5 7699320 7699406 -195386126 - LTR12 LTR ERV1 -24 690 307 2815 134 22 146 chr5 7699410 7700196 -195385336 - LTR12 LTR ERV1 0 688 1 603 226 31 51 chr5 7700374 7700666 -195384866 - pTR5 LTR ERV1 -1410 1028 743 2078 132 0 3 chr5 7701849 7702136 -195383396 + AluSq SINE Alu 1 286 -27 618 266 86 57 chr5 7702396 7702761 -195382771 + MLT1G LTR MaLR 5 395 -195 187 354 25 56 chr5 7703506 7703667 -195381865 + L2 LINE L2 2660 2815 -499 375 245 141 52 chr5 7703823 7704072 -195381460 + L1M4 LINE L1 5101 5371 -775 204 208 42 0 chr5 7704593 7704641 -195380891 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 2428 86 0 0 chr5 7705711 7706012 -195379520 - AluY SINE Alu -10 301 1 8719 194 17 10 chr5 7706351 7709490 -195376042 - L1PB3 LINE L1 -2 6209 3046 5754 188 32 15 chr5 7709495 7711844 -195373688 - L1PB3 LINE L1 -3753 2450 5 1415 241 34 36 chr5 7711813 7712227 -195373305 - L1PBa LINE L1 -5224 980 568 * 416 101 217 0 chr5 7712277 7712346 -195373186 - THE1B LTR MaLR -280 84 1 845 304 77 29 chr5 7712346 7712929 -195372603 - L1PBa LINE L1 -6085 778 168 2477 101 2 78 chr5 7713143 7713551 -195371981 + MER51B LTR ERV1 1 377 0 351 371 83 19 chr5 7713689 7713953 -195371579 - L2 LINE L2 -9 3263 2983 217 360 105 35 chr5 7714872 7715044 -195370488 + MIR3 SINE MIR 16 199 -9 613 271 81 9 chr5 7715136 7715357 -195370175 - MIR SINE MIR 0 262 26 2173 120 18 20 chr5 7715622 7715964 -195369568 + MER61A LTR ERV1 3 343 0 25 31 0 0 chr5 7717822 7717854 -195367678 + AT_rich Low_complexity Low_complexity 1 32 0 201 154 0 0 chr5 7717990 7718029 -195367503 + (TG)n Simple_repeat Simple_repeat 2 40 0 2011 180 34 24 chr5 7718104 7718393 -195367139 - MSTA LTR MaLR -6 422 126 1326 154 57 124 chr5 7718393 7718626 -195366906 - THE1C LTR MaLR 0 375 179 1878 121 23 4 chr5 7718626 7718891 -195366641 + AluSq SINE Alu 30 299 -14 1326 154 57 124 chr5 7718891 7719059 -195366473 - THE1C LTR MaLR -196 179 1 2011 180 34 24 chr5 7719059 7719186 -195366346 - MSTA LTR MaLR -302 126 2 3805 257 37 37 chr5 7719186 7719554 -195365978 + L1MC1 LINE L1 2526 2893 -3253 1477 151 46 0 chr5 7719554 7719838 -195365694 + L1MA3 LINE L1 6007 6303 -2 3805 257 37 37 chr5 7719838 7721149 -195364383 + L1MC1 LINE L1 2893 4208 -1938 2516 146 41 2 chr5 7721149 7721561 -195363971 - MSTA LTR MaLR 0 428 1 3805 257 37 37 chr5 7721561 7721602 -195363930 + L1MC1 LINE L1 4207 4247 -1899 * 4371 222 54 7 chr5 7721598 7723295 -195362237 + L1MC1 LINE L1 4533 6314 -19 736 203 0 0 chr5 7723383 7723516 -195362016 - FLAM_A SINE Alu 0 133 1 1737 185 125 10 chr5 7723956 7724340 -195361192 - MSTA LTR MaLR 0 428 1 8626 165 12 35 chr5 7724340 7725955 -195359577 - MSTA-int LTR MaLR 0 1580 3 1730 165 132 26 chr5 7725957 7726344 -195359188 - MSTA LTR MaLR 0 428 1 626 314 83 31 chr5 7726738 7727158 -195358374 + L1MC/D LINE L1 354 795 -5926 246 270 124 0 chr5 7727231 7727320 -195358212 - L2 LINE L2 -869 2445 2346 3542 160 50 21 chr5 7727336 7728037 -195357495 - MER50 LTR ERV1 -13 721 1 220 291 13 25 chr5 7728038 7728117 -195357415 - L2 LINE L2 -991 2323 2246 * 237 325 98 41 chr5 7728111 7728305 -195357227 + L2 LINE L2 3008 3212 -101 4454 166 13 1 chr5 7728325 7729147 -195356385 - L1PA16 LINE L1 -6 6160 5329 407 302 41 18 chr5 7729437 7729606 -195355926 + L1MC/D LINE L1 1646 1818 -4722 249 297 24 36 chr5 7729610 7729775 -195355757 + L1MC/D LINE L1 2005 2167 -4554 343 282 64 11 chr5 7730037 7730225 -195355307 + L1MC/D LINE L1 5359 5556 -984 5430 168 22 6 chr5 7730232 7732203 -195353329 + L1PB1 LINE L1 4150 6151 0 572 193 135 66 chr5 7732219 7732463 -195353069 + MER2 DNA MER2_type 85 345 0 4383 170 45 8 chr5 7732465 7733485 -195352047 + L1MA7 LINE L1 5228 6286 -5 389 328 48 39 chr5 7733500 7733729 -195351803 + L1MC/D LINE L1 5960 6190 -2012 242 248 92 43 chr5 7734060 7734201 -195351331 - L1MC/D LINE L1 -721 6107 5960 1779 121 19 29 chr5 7734379 7734686 -195350846 - L1PB1 LINE L1 -8 6143 5840 6156 127 10 52 chr5 7734687 7735787 -195349745 - THE1B-int LTR MaLR -526 1054 1 1840 165 73 3 chr5 7735787 7736127 -195349405 - THE1B LTR MaLR 0 364 1 2193 201 2 16 chr5 7736127 7736644 -195348888 - L1 LINE L1 -1729 4417 3908 5445 234 13 2 chr5 7736660 7738098 -195347434 + L1 LINE L1 2422 3875 -2271 377 197 0 0 chr5 7738099 7738170 -195347362 - MER2 DNA MER2_type -244 101 31 4413 244 89 16 chr5 7738192 7739399 -195346133 - L1MC/D LINE L1 -920 5812 4694 1008 94 29 0 chr5 7739399 7739569 -195345963 + CT-rich Low_complexity Low_complexity 1 175 0 4413 244 89 16 chr5 7739569 7741427 -195344105 - L1MC/D LINE L1 -2038 4694 2424 3753 281 27 23 chr5 7741561 7743124 -195342408 - L1MC/D LINE L1 -4516 2137 935 235 338 0 15 chr5 7743170 7743238 -195342294 - L1M3de LINE L1 -6309 344 278 413 327 19 55 chr5 7743741 7744152 -195341380 - L1M3de LINE L1 -5638 1015 572 749 223 11 11 chr5 7744799 7744974 -195340558 + MER20 DNA MER1_type 45 219 0 879 253 98 7 chr5 7745261 7745566 -195339966 - L1 LINE L1 -1916 4230 3898 1943 205 42 34 chr5 7745569 7745859 -195339673 + L1MA9 LINE L1 5489 5786 -526 249 83 0 0 chr5 7745859 7745895 -195339637 + (TG)n Simple_repeat Simple_repeat 2 37 0 1943 205 42 34 chr5 7745895 7746101 -195339431 + L1MA9 LINE L1 5786 5989 -323 2637 137 24 9 chr5 7748144 7748566 -195336966 - MSTA LTR MaLR 0 428 1 505 303 104 66 chr5 7748675 7749277 -195336255 - L1MCa LINE L1 -4579 2028 1203 939 246 123 81 chr5 7749316 7749834 -195335698 + MLT1G3 LTR MaLR 1 526 -4 379 335 62 52 chr5 7749883 7750208 -195335324 - L1MCa LINE L1 -5078 1338 1011 261 294 96 7 chr5 7751378 7751524 -195334008 + HAL1 LINE L1 45 203 -2304 1945 148 7 3 chr5 7751743 7752053 -195333479 - AluSx SINE Alu -1 311 1 585 178 23 11 chr5 7752133 7752307 -195333225 + GA-rich Low_complexity Low_complexity 1 176 0 301 194 56 56 chr5 7753221 7753329 -195332203 - L1ME LINE L1 -309 5812 5705 364 112 45 79 chr5 7753337 7753426 -195332106 - L1MA7 LINE L1 0 6291 6206 367 270 85 18 chr5 7754814 7754979 -195330553 + MLT1H LTR MaLR 57 210 -339 941 166 0 143 chr5 7755605 7755828 -195329704 + AluJb SINE Alu 84 274 -38 705 196 23 6 chr5 7755830 7756156 -195329376 + GA-rich Low_complexity Low_complexity 1 331 0 1900 198 8 6 chr5 7756623 7756987 -195328545 - MLT1A1 LTR MaLR 0 365 1 347 281 79 26 chr5 7757254 7757368 -195328164 + L2 LINE L2 3193 3312 -1 3082 73 7 0 chr5 7757966 7758377 -195327155 + L1PA7 LINE L1 5740 6153 -1 266 321 50 25 chr5 7758428 7758587 -195326945 - MIR SINE MIR -10 252 90 453 226 21 153 chr5 7758970 7759155 -195326377 - Zaphod DNA AcHobo -2 4029 3908 1469 186 116 3 chr5 7759155 7759482 -195326050 + MLT1A1 LTR MaLR 1 364 -1 453 226 21 153 chr5 7759482 7759636 -195325896 - Zaphod DNA AcHobo -123 3908 3735 805 217 76 38 chr5 7759757 7759869 -195325663 - Zaphod DNA AcHobo -3029 1002 896 2098 127 0 16 chr5 7759869 7760183 -195325349 + AluSx SINE Alu 1 309 -3 805 217 76 38 chr5 7760183 7760544 -195324988 - Zaphod DNA AcHobo -3135 896 511 190 308 0 19 chr5 7762185 7762237 -195323295 - L2 LINE L2 -15 3257 3207 393 312 162 34 chr5 7762364 7762990 -195322542 - L2 LINE L2 -137 3176 2462 536 368 51 21 chr5 7763046 7763758 -195321774 + L2 LINE L2 2361 3093 -220 2276 108 7 0 chr5 7764321 7764627 -195320905 + AluSg SINE Alu 1 308 -2 2045 105 24 14 chr5 7765147 7765442 -195320090 + AluSx SINE Alu 11 308 -4 252 0 0 0 chr5 7765874 7765902 -195319630 + (TTA)n Simple_repeat Simple_repeat 3 30 0 7225 21 0 3 chr5 7765906 7767118 -195318414 - L1PA4 LINE L1 -20 6135 4927 1871 17 13 0 chr5 7767116 7767349 -195318183 - L1PA4 LINE L1 -1708 4438 4203 * 194 380 87 39 chr5 7769096 7769325 -195316207 + MIR SINE MIR 8 247 -15 2077 140 0 0 chr5 7769642 7769950 -195315582 - AluSx SINE Alu -1 311 4 238 237 53 0 chr5 7770027 7770103 -195315429 - L1ME1 LINE L1 -23 6143 6064 242 328 158 28 chr5 7770417 7770664 -195314868 - L3 LINE CR1 -8 1569 1291 21 36 0 0 chr5 7770725 7770753 -195314779 + AT_rich Low_complexity Low_complexity 1 28 0 934 266 145 0 chr5 7770771 7771060 -195314472 - LTR40a LTR ERVL -187 332 2 1190 213 55 22 chr5 7771826 7772219 -195313313 + MER54B LTR ERVL 488 793 0 22 0 0 0 chr5 7774548 7774570 -195310962 + AT_rich Low_complexity Low_complexity 1 22 0 949 152 81 113 chr5 7775468 7775777 -195309755 - AluJo SINE Alu -2 300 2 263 28 28 0 chr5 7775802 7775838 -195309694 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 322 245 6 6 chr5 7775902 7776065 -195309467 + (TA)n Simple_repeat Simple_repeat 2 164 0 2344 111 13 21 chr5 7776146 7776524 -195309008 + THE1C LTR MaLR 1 375 0 4922 55 19 0 chr5 7776812 7777433 -195308099 + L1PA8 LINE L1 5536 6168 -4 1638 172 22 0 chr5 7777521 7777831 -195307701 + AluSx SINE Alu 4 319 0 26 50 0 0 chr5 7777841 7777881 -195307651 + AT_rich Low_complexity Low_complexity 1 40 0 423 312 84 5 chr5 7777900 7778102 -195307430 - MIR SINE MIR -11 251 34 1199 140 82 27 chr5 7778106 7778363 -195307169 - THE1C LTR MaLR 0 375 105 8384 141 54 27 chr5 7778363 7779320 -195306212 - THE1B-int LTR MaLR -9 1571 641 2047 156 11 32 chr5 7779320 7779692 -195305840 - THE1B LTR MaLR 0 364 1 10538 125 11 2 chr5 7779692 7781257 -195304275 - THE1B-int LTR MaLR 0 1580 1 2131 127 11 50 chr5 7781257 7781636 -195303896 - THE1B LTR MaLR 0 364 1 8384 141 54 27 chr5 7781636 7782207 -195303325 - THE1B-int LTR MaLR -938 642 1 1863 132 76 20 chr5 7782207 7782562 -195302970 - THE1C LTR MaLR 0 375 1 206 297 36 9 chr5 7782731 7782842 -195302690 + GA-rich Low_complexity Low_complexity 5 118 0 1319 219 45 31 chr5 7782975 7783335 -195302197 - MLT1A2 LTR MaLR -5 462 5 3426 104 40 2 chr5 7783560 7784081 -195301451 + L1PA13 LINE L1 5618 6158 -5 354 143 0 0 chr5 7784843 7784906 -195300626 - MLT2B1 LTR ERVL 0 520 458 215 180 33 0 chr5 7784913 7784974 -195300558 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 414 196 14 14 chr5 7784989 7785137 -195300395 + (TAGA)n Simple_repeat Simple_repeat 4 151 0 1339 233 23 19 chr5 7785137 7785564 -195299968 - MLT2B1 LTR ERVL -42 478 1 213 219 0 0 chr5 7785629 7785702 -195299830 + (CA)n Simple_repeat Simple_repeat 1 73 0 2500 66 0 0 chr5 7786027 7786330 -195299202 + AluY SINE Alu 1 303 -8 488 172 66 0 chr5 7786384 7786506 -195299026 + L1MA7 LINE L1 6162 6291 0 1019 161 62 45 chr5 7787494 7787737 -195297795 - MER2 DNA MER2_type -51 294 48 195 42 0 0 chr5 7787755 7787779 -195297753 + (TG)n Simple_repeat Simple_repeat 1 24 0 343 278 56 9 chr5 7787811 7787919 -195297613 + MIR SINE MIR 77 189 -73 181 402 0 12 chr5 7788100 7788182 -195297350 - MER5A DNA MER1_type -102 87 7 480 273 18 0 chr5 7788233 7788343 -195297189 + MER5B DNA MER1_type 7 118 -60 742 195 52 108 chr5 7788520 7788864 -195296668 - L1MC3 LINE L1 0 7785 7461 4868 148 30 24 chr5 7788897 7789950 -195295582 - L1PA15 LINE L1 -4 6161 5104 2265 189 8 8 chr5 7789959 7790456 -195295076 + L1PA15 LINE L1 4598 5094 -1052 * 2290 210 56 26 chr5 7790455 7791098 -195294434 - L1MC3 LINE L1 -311 7474 6813 244 36 0 125 chr5 7791540 7791596 -195293936 + (T)n Simple_repeat Simple_repeat 1 49 0 4156 0 0 0 chr5 7791596 7792056 -195293476 - L1HS LINE L1 0 6155 5696 * 11683 24 0 0 chr5 7792055 7793428 -195292104 + L1P LINE L1 3353 4725 -1421 2063 131 0 0 chr5 7793951 7794248 -195291284 + AluSx SINE Alu 1 297 -15 1052 226 8 25 chr5 7794335 7794574 -195290958 + AluJo SINE Alu 65 299 -13 220 156 44 0 chr5 7795068 7795113 -195290419 + GA-rich Low_complexity Low_complexity 2 48 0 7543 28 0 5 chr5 7796136 7797515 -195288017 - L1PA3 LINE L1 0 6155 4818 5913 26 0 0 chr5 7797515 7798216 -195287316 + L1PA3 LINE L1 4143 4843 -1303 1429 192 73 0 chr5 7798519 7798821 -195286711 + L1MC1 LINE L1 6008 6331 -2 22 35 0 0 chr5 7799054 7799083 -195286449 + AT_rich Low_complexity Low_complexity 1 29 0 1541 227 51 17 chr5 7799581 7799688 -195285844 + MLT1A1 LTR MaLR 1 103 -262 2225 116 33 25 chr5 7799688 7800049 -195285483 - THE1B LTR MaLR 0 364 1 1541 227 51 17 chr5 7800049 7800294 -195285238 + MLT1A1 LTR MaLR 103 365 0 336 317 36 48 chr5 7800867 7801076 -195284456 - MIR SINE MIR -10 252 42 23 33 0 0 chr5 7801447 7801477 -195284055 + AT_rich Low_complexity Low_complexity 1 30 0 2513 89 10 79 chr5 7801496 7801901 -195283631 + MER51B LTR ERV1 1 377 0 15070 64 16 8 chr5 7802569 7804498 -195281034 + HERVL LTR ERVL 3368 5310 -344 245 247 0 13 chr5 7804501 7804578 -195280954 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 729 318 108 31 chr5 7804635 7805151 -195280381 + L2 LINE L2 1757 2312 -1002 219 36 0 0 chr5 7805837 7805865 -195279667 + (TTA)n Simple_repeat Simple_repeat 3 30 0 43376 46 4 1 chr5 7805865 7811984 -195273548 - L1PA4 LINE L1 -18 6137 1 22 0 0 0 chr5 7812911 7812933 -195272599 + AT_rich Low_complexity Low_complexity 1 22 0 231 146 0 0 chr5 7814405 7814446 -195271086 + (TG)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chr5 7814517 7814544 -195270988 + (TG)n Simple_repeat Simple_repeat 2 28 0 558 240 0 0 chr5 7815739 7815889 -195269643 + CT-rich Low_complexity Low_complexity 3 152 0 253 88 0 0 chr5 7815890 7815924 -195269608 + (TC)n Simple_repeat Simple_repeat 2 35 0 1329 223 62 30 chr5 7817715 7817875 -195267657 + MLT1B LTR MaLR 6 159 -231 2186 100 7 16 chr5 7817875 7818184 -195267348 + AluSc SINE Alu 1 306 -3 1329 223 62 30 chr5 7818184 7818396 -195267136 + MLT1B LTR MaLR 159 390 0 198 261 171 27 chr5 7818430 7818541 -195266991 - L3 LINE CR1 -263 1314 1188 1758 175 25 22 chr5 7818706 7819072 -195266460 - THE1C LTR MaLR -4 371 5 827 317 53 36 chr5 7820806 7821279 -195264253 + MLT1H LTR MaLR 15 495 -54 2406 83 0 16 chr5 7822445 7822757 -195262775 - AluSp SINE Alu -6 307 1 303 353 22 0 chr5 7823411 7823550 -195261982 + L1ME LINE L1 5527 5668 -453 620 224 162 25 chr5 7823830 7824287 -195261245 + L1M4 LINE L1 4899 5429 -752 354 316 14 29 chr5 7824553 7824692 -195260840 - MIR SINE MIR -19 243 107 507 260 0 0 chr5 7824984 7825161 -195260371 + (CTA)n Simple_repeat Simple_repeat 2 178 0 222 304 0 0 chr5 7825185 7825297 -195260235 + (CTA)n Simple_repeat Simple_repeat 1 112 0 2175 225 89 20 chr5 7825297 7825958 -195259574 + Tigger7 DNA MER2_type 1 2573 -14 255 223 160 11 chr5 7826010 7826104 -195259428 - MIR SINE MIR -18 244 137 318 294 55 14 chr5 7826370 7826516 -195259016 + MLT1I LTR MaLR 258 409 0 1836 132 92 7 chr5 7826762 7827043 -195258489 + AluSx SINE Alu 2 306 -6 186 333 30 0 chr5 7827418 7827484 -195258048 - L2 LINE L2 0 3272 3205 22 0 0 0 chr5 7827486 7827508 -195258024 + AT_rich Low_complexity Low_complexity 1 22 0 1216 221 12 24 chr5 7828357 7828610 -195256922 + Tigger3(Golem) DNA MER2_type 2 251 -2778 6547 41 5 0 chr5 7828775 7829583 -195255949 - L1PA4 LINE L1 -820 5326 4515 6930 26 1 1 chr5 7829583 7830394 -195255138 + L1PA4 LINE L1 5339 6154 -1 299 279 60 67 chr5 7831370 7831639 -195253893 + MLT1J LTR MaLR 243 509 -2 26 30 0 0 chr5 7832778 7832811 -195252721 + AT_rich Low_complexity Low_complexity 1 33 0 2971 132 25 36 chr5 7832824 7832945 -195252587 + L1P4 LINE L1 5213 5334 -831 1769 102 87 26 chr5 7832945 7833231 -195252301 + AluSp SINE Alu 5 306 0 2971 132 25 36 chr5 7833231 7833649 -195251883 + L1P4 LINE L1 5334 5758 -407 235 189 19 0 chr5 7833652 7833705 -195251827 + L1PA16 LINE L1 6113 6166 0 387 292 42 28 chr5 7833754 7833981 -195251551 + L1MDb LINE L1 1152 1392 -5004 243 110 64 18 chr5 7833985 7834094 -195251438 + (TA)n Simple_repeat Simple_repeat 1 114 0 1944 118 11 0 chr5 7834262 7834534 -195250998 + AluSx SINE Alu 1 275 -37 360 265 63 63 chr5 7834563 7834752 -195250780 + L1MDb LINE L1 1540 1728 -4678 2142 120 10 98 chr5 7837763 7838162 -195247370 - THE1B LTR MaLR 0 364 1 418 263 10 0 chr5 7838977 7839076 -195246456 + MLT2E LTR ERVL 53 152 -476 1605 142 103 14 chr5 7839388 7839669 -195245863 - AluSx SINE Alu -6 306 1 2670 51 0 0 chr5 7840124 7840435 -195245097 + AluY SINE Alu 1 311 0 1869 291 25 32 chr5 7841145 7841868 -195243664 + L1MEc LINE L1 36 753 -5643 2541 58 9 6 chr5 7842675 7843002 -195242530 - L1PA7 LINE L1 -5 6149 5822 8527 36 0 0 chr5 7843598 7845382 -195240150 - L1PA5 LINE L1 -13 6141 4358 22 0 0 0 chr5 7845977 7845999 -195239533 + AT_rich Low_complexity Low_complexity 1 22 0 221 297 116 43 chr5 7847323 7847461 -195238071 - MIR SINE MIR -49 213 66 180 0 0 0 chr5 7848427 7848447 -195237085 + (T)n Simple_repeat Simple_repeat 1 20 0 2131 65 25 11 chr5 7849927 7850203 -195235329 - AluY SINE Alu -17 294 15 888 58 0 16 chr5 7851254 7851375 -195234157 - L1PA6 LINE L1 0 6154 6036 309 26 0 0 chr5 7852750 7852788 -195232744 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1264 226 25 14 chr5 7852792 7853071 -195232461 - AluJo SINE Alu -30 282 1 2068 224 154 8 chr5 7853814 7854413 -195231119 + MER76 LTR ERV 2 687 -1 2670 239 156 20 chr5 7854738 7855743 -195229789 + L1ME1 LINE L1 5019 6161 -5 442 329 103 26 chr5 7855914 7856224 -195229308 - L2 LINE L2 -4 3309 2976 1677 99 13 115 chr5 7856371 7856711 -195228821 - AluSx SINE Alu 0 308 1 484 15 31 0 chr5 7857529 7857594 -195227938 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 2023 141 0 0 chr5 7857792 7858075 -195227457 - AluSx SINE Alu -29 283 1 546 169 0 0 chr5 7858101 7858190 -195227342 + MSTB1 LTR MaLR 294 382 -50 22 0 0 0 chr5 7858211 7858233 -195227299 + AT_rich Low_complexity Low_complexity 1 22 0 512 312 23 23 chr5 7858625 7858840 -195226692 - MIR SINE MIR 0 262 48 23 33 0 0 chr5 7859739 7859769 -195225763 + AT_rich Low_complexity Low_complexity 1 30 0 1476 257 31 21 chr5 7860462 7861073 -195224459 + L1M4 LINE L1 2505 3121 -3025 188 342 72 18 chr5 7861239 7861350 -195224182 - MIR3 SINE MIR -13 195 79 26 88 0 0 chr5 7862490 7862558 -195222974 + AT_rich Low_complexity Low_complexity 1 68 0 1560 211 6 3 chr5 7863910 7864247 -195221285 - L1 LINE L1 -1112 5034 4697 4512 176 37 11 chr5 7864250 7864931 -195220601 + L1PB4 LINE L1 5068 5788 -368 184 59 59 0 chr5 7864931 7864965 -195220567 + (TA)n Simple_repeat Simple_repeat 1 36 0 4512 176 37 11 chr5 7864965 7865341 -195220191 + L1PB4 LINE L1 5788 6153 -3 422 326 77 11 chr5 7865728 7866246 -195219286 + MLT1G1 LTR MaLR 5 588 -2 3441 309 83 28 chr5 7868180 7868486 -195217046 + L2 LINE L2 1132 1420 -1894 1993 140 46 6 chr5 7868486 7868836 -195216696 - THE1B LTR MaLR 0 364 1 3441 309 83 28 chr5 7868836 7869385 -195216147 + L2 LINE L2 1420 1937 -1377 1732 181 40 27 chr5 7869385 7869755 -195215777 + THE1C LTR MaLR 1 375 0 3441 309 83 28 chr5 7869755 7870495 -195215037 + L2 LINE L2 1937 2816 -498 22 70 0 0 chr5 7870543 7870586 -195214946 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr5 7870719 7870754 -195214778 + AT_rich Low_complexity Low_complexity 1 35 0 246 169 89 81 chr5 7871914 7872038 -195213494 - MER54B LTR ERVL -330 463 339 240 319 83 56 chr5 7873280 7873424 -195212108 - L2 LINE L2 -559 2755 2608 1731 249 35 5 chr5 7873653 7874083 -195211449 - MER68 LTR ERV1 0 562 120 2278 168 5 10 chr5 7874204 7874597 -195210935 - ERVL-B3 LTR ERVL -335 5429 5039 2150 151 70 51 chr5 7874595 7875026 -195210506 - ERVL-B3 LTR ERVL -2924 2840 2402 * 3956 226 13 41 chr5 7875030 7876045 -195209487 - MER45B DNA AcHobo -54 986 1 510 85 0 24 chr5 7876174 7876256 -195209276 + L1PA6 LINE L1 6075 6154 0 565 221 17 88 chr5 7877028 7877209 -195208323 + MER68 LTR ERV1 30 197 -365 3432 208 38 5 chr5 7877209 7878534 -195206998 - ERVL-B3 LTR ERVL -3359 2405 996 537 82 0 0 chr5 7878535 7878608 -195206924 - L1PA13 LINE L1 -8 6155 6083 2544 248 61 24 chr5 7878615 7879105 -195206427 - ERVL-B3 LTR ERVL -4754 731 261 2102 191 33 5 chr5 7879105 7879525 -195206007 - MSTB1 LTR MaLR 0 432 1 2544 248 61 24 chr5 7879525 7879538 -195205994 - ERVL-B3 LTR ERVL -5224 261 250 1824 229 46 64 chr5 7879538 7880102 -195205430 - MLT2B3 LTR ERVL 0 554 1 2544 248 61 24 chr5 7880102 7880329 -195205203 - ERVL-B3 LTR ERVL -5235 250 4 2126 161 131 47 chr5 7880329 7880839 -195204693 - MLT2B3 LTR ERVL -1 553 1 587 275 17 78 chr5 7881699 7881994 -195203538 - L1MD2 LINE L1 -13 6346 6070 566 261 6 28 chr5 7882012 7882188 -195203344 - L1MD2 LINE L1 -362 5997 5826 255 244 139 23 chr5 7882413 7882499 -195203033 - L2 LINE L2 -15 3298 3203 203 152 22 0 chr5 7882515 7882561 -195202971 + GA-rich Low_complexity Low_complexity 1 47 0 219 88 0 0 chr5 7883399 7883433 -195202099 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 603 234 21 0 chr5 7883653 7883794 -195201738 + MER20 DNA MER1_type 76 219 0 1317 216 65 23 chr5 7883866 7884217 -195201315 - MLT1A2 LTR MaLR -4 370 5 223 343 33 47 chr5 7885044 7885257 -195200275 + L2 LINE L2 1693 1902 -1412 210 240 40 0 chr5 7885808 7885858 -195199674 + MER91 DNA MER1_type 75 126 -14 315 320 135 38 chr5 7885872 7886573 -195198959 + L2 LINE L2 2469 3262 -10 210 71 0 0 chr5 7888110 7888138 -195197394 + (TA)n Simple_repeat Simple_repeat 2 29 0 22 56 0 0 chr5 7889100 7889136 -195196396 + AT_rich Low_complexity Low_complexity 1 36 0 30 45 0 0 chr5 7889255 7889299 -195196233 + AT_rich Low_complexity Low_complexity 1 44 0 26 30 0 0 chr5 7890298 7890331 -195195201 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr5 7890368 7890391 -195195141 + AT_rich Low_complexity Low_complexity 1 23 0 292 146 135 67 chr5 7890610 7890699 -195194833 + L1PA16 LINE L1 6072 6166 0 248 28 56 0 chr5 7891705 7891741 -195193791 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 423 342 53 22 chr5 7891746 7891971 -195193561 + MIR SINE MIR 28 259 -3 860 351 114 24 chr5 7891979 7893020 -195192512 - L2 LINE L2 -35 3278 2116 270 0 0 0 chr5 7893020 7893050 -195192482 + (CAA)n Simple_repeat Simple_repeat 2 31 0 860 351 114 24 chr5 7893050 7893191 -195192341 - L2 LINE L2 -1197 2116 1989 1076 76 0 0 chr5 7893197 7893329 -195192203 + AluY SINE Alu 3 134 -177 2449 71 0 3 chr5 7893331 7893639 -195191893 + AluY SINE Alu 3 309 -2 303 204 151 11 chr5 7893645 7893738 -195191794 - L2 LINE L2 -1331 1983 1878 21 0 0 0 chr5 7894348 7894369 -195191163 + AT_rich Low_complexity Low_complexity 1 21 0 1196 213 84 58 chr5 7894434 7894814 -195190718 + MLT1B LTR MaLR 1 390 0 26 93 0 0 chr5 7894843 7894918 -195190614 + AT_rich Low_complexity Low_complexity 1 75 0 231 308 57 6 chr5 7896072 7896231 -195189301 + L1M4 LINE L1 4534 4700 -1446 180 300 20 0 chr5 7896345 7896395 -195189137 + MIR SINE MIR 8 58 -204 844 220 38 19 chr5 7896861 7897070 -195188462 + MER20 DNA MER1_type 7 219 0 2258 64 16 13 chr5 7897275 7897589 -195187943 - L1PA5 LINE L1 -1 6153 5839 1076 161 0 0 chr5 7899040 7899202 -195186330 - AluSg/x SINE Alu -14 298 137 1905 114 54 14 chr5 7899230 7899527 -195186005 - AluSc SINE Alu 0 309 1 234 227 61 0 chr5 7900201 7900267 -195185265 - MER5B DNA MER1_type 0 178 109 24 0 0 0 chr5 7900368 7900392 -195185140 + AT_rich Low_complexity Low_complexity 1 24 0 4055 127 43 1 chr5 7901524 7902263 -195183269 - L1PA16 LINE L1 0 6163 5355 588 107 0 0 chr5 7902263 7902347 -195183185 - AluS SINE Alu -228 84 1 1675 215 67 0 chr5 7902351 7902797 -195182735 - L1PA16 LINE L1 -783 5363 4888 296 309 103 7 chr5 7902927 7903063 -195182469 - MIR SINE MIR -61 201 53 235 258 21 86 chr5 7903095 7903188 -195182344 + L2 LINE L2 3169 3255 -17 224 333 15 68 chr5 7903466 7903598 -195181934 - L2 LINE L2 0 3272 3148 468 323 22 36 chr5 7903815 7904038 -195181494 + MIR SINE MIR 5 224 -38 1520 235 11 16 chr5 7905014 7905392 -195180140 + L1MD1 LINE L1 5740 6115 -127 320 266 11 57 chr5 7906271 7906448 -195179084 + L1M4 LINE L1 3687 3855 -2291 200 294 0 16 chr5 7906456 7906582 -195178950 + (CATA)n Simple_repeat Simple_repeat 1 124 0 256 236 18 0 chr5 7906765 7906875 -195178657 + (TA)n Simple_repeat Simple_repeat 1 112 0 390 344 59 43 chr5 7906995 7907370 -195178162 - L1MC/D LINE L1 -2000 5808 5428 32 26 0 0 chr5 7908124 7908163 -195177369 + AT_rich Low_complexity Low_complexity 1 39 0 4825 165 14 19 chr5 7908647 7909639 -195175893 + L1PA16 LINE L1 5151 6137 -29 2205 170 29 12 chr5 7909641 7910031 -195175501 + MSTA LTR MaLR 4 403 -25 15867 66 10 0 chr5 7910031 7912923 -195172609 - L1PA6 LINE L1 0 6154 3246 2205 170 29 12 chr5 7912923 7912950 -195172582 + MSTA LTR MaLR 403 428 0 3435 118 84 16 chr5 7913767 7914317 -195171215 - LTR18B LTR ERVL -27 587 1 1696 148 22 94 chr5 7914623 7914802 -195170730 + THE1C LTR MaLR 1 136 -239 2080 130 3 0 chr5 7914802 7915102 -195170430 - AluSq SINE Alu -12 301 1 1696 148 22 94 chr5 7915102 7915326 -195170206 + THE1C LTR MaLR 136 375 0 288 0 0 0 chr5 7916384 7916416 -195169116 + (CA)n Simple_repeat Simple_repeat 1 32 0 2130 151 81 3 chr5 7916427 7916810 -195168722 - MLT2C2 LTR ERVL -48 416 4 256 247 78 13 chr5 7916814 7916891 -195168641 - MIR SINE MIR -150 112 31 1080 228 30 0 chr5 7917170 7917407 -195168125 - L1PB4 LINE L1 -1191 4955 4712 4042 190 23 8 chr5 7917410 7918493 -195167039 + L1PB4 LINE L1 4953 6047 -109 2192 207 47 11 chr5 7918516 7919052 -195166480 - L1MB7 LINE L1 -70 6612 6058 513 220 97 113 chr5 7919052 7919308 -195166224 - MLT1D LTR MaLR -196 271 1 374 229 28 50 chr5 7919308 7919487 -195166045 - L1MB7 LINE L1 -2729 3915 3741 274 261 0 0 chr5 7919472 7919537 -195165995 - L1MB7 LINE L1 -6461 81 17 * 2116 80 0 0 chr5 7920843 7921119 -195164413 - AluY SINE Alu -4 307 32 678 149 53 0 chr5 7925175 7925289 -195160243 - L1PA15 LINE L1 -489 5676 5557 2831 124 16 2 chr5 7925289 7925741 -195159791 + L1PA15 LINE L1 5705 6163 -2 3714 52 2 0 chr5 7925821 7926286 -195159246 - L1PA5 LINE L1 -5 6149 5684 264 318 35 0 chr5 7927164 7927249 -195158283 + MIR SINE MIR 48 135 -127 2248 183 48 101 chr5 7927261 7927336 -195158196 + MLT2B3 LTR ERVL 2 79 -475 1106 71 0 22 chr5 7927336 7927519 -195158013 + (TG)n Simple_repeat Simple_repeat 2 180 0 2248 183 48 101 chr5 7927519 7927566 -195157966 + MLT2B3 LTR ERVL 79 127 -427 1118 67 11 11 chr5 7927566 7927746 -195157786 + (TG)n Simple_repeat Simple_repeat 1 180 0 2248 183 48 101 chr5 7927746 7928152 -195157380 + MLT2B3 LTR ERVL 127 500 -54 416 51 17 0 chr5 7928152 7928211 -195157321 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 2248 183 48 101 chr5 7928211 7928264 -195157268 + MLT2B3 LTR ERVL 500 554 0 197 392 108 0 chr5 7928437 7928567 -195156965 + L2 LINE L2 3127 3270 -2 1447 39 6 0 chr5 7929079 7929257 -195156275 - L1PA4 LINE L1 -2 6153 5975 1578 180 20 8 chr5 7930514 7930925 -195154607 - L1M LINE L1 -743 5403 5008 * 1936 223 31 119 chr5 7930919 7931681 -195153851 + L1MA6 LINE L1 5424 6118 -182 25 31 0 0 chr5 7931788 7931820 -195153712 + AT_rich Low_complexity Low_complexity 1 32 0 203 208 0 19 chr5 7932128 7932181 -195153351 + (TTTAA)n Simple_repeat Simple_repeat 5 56 0 23 54 0 0 chr5 7933590 7933627 -195151905 + AT_rich Low_complexity Low_complexity 1 37 0 1929 187 37 8 chr5 7933798 7934177 -195151355 - MLT1B LTR MaLR 0 390 1 284 75 0 0 chr5 7934215 7934255 -195151277 - L1MA9 LINE L1 -39 6273 6234 478 78 0 111 chr5 7934255 7934294 -195151238 + MADE1 DNA Mariner 1 26 -54 1018 52 22 0 chr5 7934294 7934429 -195151103 - L1PA4 LINE L1 -1 6154 6017 478 78 0 111 chr5 7934429 7934479 -195151053 + MADE1 DNA Mariner 26 80 0 772 227 62 27 chr5 7934479 7934739 -195150793 - L1MA9 LINE L1 -83 6229 5961 844 61 0 0 chr5 7936197 7936311 -195149221 + L1PA4 LINE L1 6042 6155 0 452 312 144 10 chr5 7937267 7937565 -195147967 - LTR16A LTR ERVL -88 362 25 232 182 23 0 chr5 7937569 7937613 -195147919 - MLT2D LTR ERVL 0 554 510 1017 216 155 4 chr5 7937644 7937908 -195147624 - MLT2D LTR ERVL -19 395 92 1230 260 38 30 chr5 7939148 7939675 -195145857 + L1M4 LINE L1 4794 5324 -822 492 219 41 41 chr5 7941636 7941805 -195143727 + MER89 LTR ERV1 1 169 -390 1288 145 94 86 chr5 7942469 7942841 -195142691 - THE1C LTR MaLR 0 375 1 1809 227 45 16 chr5 7943810 7944255 -195141277 - MLT1C LTR MaLR -9 458 1 4667 193 10 8 chr5 7944368 7945285 -195140247 - MER49 LTR ERV1 0 923 5 21 82 0 0 chr5 7946850 7946899 -195138633 + AT_rich Low_complexity Low_complexity 1 49 0 419 243 27 18 chr5 7947069 7947180 -195138352 + MER81 DNA DNA 1 112 -2 1254 225 34 57 chr5 7948781 7949169 -195136363 - MER67C LTR ERV1 -8 506 168 2183 131 75 40 chr5 7949169 7949597 -195135935 - MER65A LTR ERV1 -2 443 1 1254 225 34 57 chr5 7949597 7949762 -195135770 - MER67C LTR ERV1 -346 168 1 224 167 21 0 chr5 7949904 7949952 -195135580 + (TA)n Simple_repeat Simple_repeat 1 49 0 225 65 0 0 chr5 7949968 7949999 -195135533 + (TC)n Simple_repeat Simple_repeat 2 32 0 263 273 107 9 chr5 7950883 7950998 -195134534 + MIR SINE MIR 31 138 -70 304 242 10 99 chr5 7952104 7952165 -195133367 - MIR SINE MIR -55 207 142 2203 225 87 21 chr5 7952165 7952774 -195132758 + MLT1E1 LTR MaLR 5 653 -1 304 242 10 99 chr5 7952774 7952874 -195132658 - MIR SINE MIR -120 142 59 229 300 0 12 chr5 7952975 7953055 -195132477 + (TA)n Simple_repeat Simple_repeat 1 79 0 415 338 44 44 chr5 7953137 7953405 -195132127 + L1M4 LINE L1 3544 3814 -2332 1545 180 47 68 chr5 7953405 7953759 -195131773 + LTR52 LTR ERVL 1 346 -75 261 0 0 0 chr5 7953759 7953788 -195131744 + (TG)n Simple_repeat Simple_repeat 2 30 0 1545 180 47 68 chr5 7953788 7953861 -195131671 + LTR52 LTR ERVL 346 419 -2 415 338 44 44 chr5 7953861 7953909 -195131623 + L1M4 LINE L1 3813 3860 -2286 272 212 30 20 chr5 7954331 7954430 -195131102 + (TATAA)n Simple_repeat Simple_repeat 5 104 0 197 86 57 0 chr5 7954465 7954500 -195131032 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 364 241 0 0 chr5 7954721 7954808 -195130724 - MLT1A1 LTR MaLR 0 390 304 3782 66 23 7 chr5 7954947 7955589 -195129943 - L1PA7 LINE L1 -367 5787 5139 2828 59 6 0 chr5 7955589 7955938 -195129594 + L1PA7 LINE L1 5789 6146 -8 878 215 37 45 chr5 7956375 7956617 -195128915 - MLT1A1 LTR MaLR -125 240 1 218 132 19 0 chr5 7957670 7957723 -195127809 + (TG)n Simple_repeat Simple_repeat 1 54 0 228 342 111 8 chr5 7958412 7958529 -195127003 + MIR SINE MIR 18 146 -62 306 0 0 0 chr5 7958584 7958618 -195126914 + (TG)n Simple_repeat Simple_repeat 2 35 0 2029 144 46 25 chr5 7959608 7959975 -195125557 - THE1C LTR MaLR 0 375 1 278 194 14 0 chr5 7960071 7960143 -195125389 + CT-rich Low_complexity Low_complexity 1 73 0 265 271 90 66 chr5 7960213 7960335 -195125197 + MER63 DNA MER1_type 2 752 -84 229 238 62 12 chr5 7960335 7960415 -195125117 + MER63 DNA MER1_type 977 1060 0 202 344 0 33 chr5 7961568 7961719 -195123813 + G-rich Low_complexity Low_complexity 3 148 0 1580 150 48 107 chr5 7962116 7962556 -195122976 - MLT2D LTR ERVL 0 414 1 1728 209 105 38 chr5 7964451 7965030 -195120502 - L1MB8 LINE L1 -290 5888 5271 182 345 53 18 chr5 7965940 7966053 -195119479 - MIR SINE MIR -33 229 113 1675 214 33 28 chr5 7967761 7967956 -195117576 + MSTB1 LTR MaLR 5 198 -234 2371 84 3 3 chr5 7967956 7968255 -195117277 + AluSq SINE Alu 1 299 -14 1675 214 33 28 chr5 7968255 7968485 -195117047 + MSTB1 LTR MaLR 198 432 0 241 269 156 25 chr5 7968796 7968956 -195116576 - MIR SINE MIR -34 228 48 379 325 41 47 chr5 7969003 7969172 -195116360 + L2 LINE L2 3103 3270 -2 198 103 0 0 chr5 7970460 7970489 -195115043 + (TTA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr5 7972331 7972360 -195113172 + AT_rich Low_complexity Low_complexity 1 29 0 1948 139 27 17 chr5 7972417 7972711 -195112821 - AluSx SINE Alu -15 297 1 194 258 237 10 chr5 7973095 7973192 -195112340 - L2 LINE L2 -2 3270 3152 329 261 11 22 chr5 7974232 7974324 -195111208 + L1MC4 LINE L1 6613 6703 -1339 643 92 55 9 chr5 7974328 7974546 -195110986 + (TA)n Simple_repeat Simple_repeat 1 228 0 559 26 37 90 chr5 7974572 7974761 -195110771 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 494 85 73 6 chr5 7974737 7974902 -195110630 + (TA)n Simple_repeat Simple_repeat 1 176 0 * 344 335 133 47 chr5 7975384 7975957 -195109575 - L2 LINE L2 -1145 2169 1548 1237 211 8 0 chr5 7976637 7976903 -195108629 + L1MD3 LINE L1 7728 7995 0 334 264 0 0 chr5 7976942 7977033 -195108499 + (CA)n Simple_repeat Simple_repeat 2 92 0 1056 286 48 45 chr5 7977204 7977743 -195107789 + MLT1F LTR MaLR 2 542 0 399 305 36 0 chr5 7977800 7977946 -195107586 - MLT1F LTR MaLR -262 280 133 240 295 8 23 chr5 7977978 7978107 -195107425 + MLT1F-int LTR MaLR 24 150 -1221 252 270 8 79 chr5 7978282 7978408 -195107124 + MLT1F-int LTR MaLR 442 558 -813 2064 117 0 11 chr5 7979157 7979439 -195106093 - AluSg SINE Alu 0 310 32 1573 210 40 101 chr5 7979657 7980210 -195105322 - LTR40a LTR ERVL 0 519 1 261 280 40 0 chr5 7980269 7980344 -195105188 + MLT1F LTR MaLR 1 78 -464 844 253 65 11 chr5 7980381 7980642 -195104890 + MLT1F LTR MaLR 155 429 -113 468 376 105 0 chr5 7980730 7980988 -195104544 - L3 LINE CR1 -13 1564 1280 229 339 0 0 chr5 7981807 7981872 -195103660 - MIR SINE MIR -103 105 41 301 321 92 16 chr5 7982664 7982848 -195102684 - L2 LINE L2 -604 2710 2513 2173 123 7 3 chr5 7983146 7983455 -195102077 - AluSx SINE Alu -2 310 1 537 187 16 82 chr5 7984085 7984267 -195101265 + MER114 LTR ERV 1 170 -478 606 262 143 6 chr5 7984301 7984637 -195100895 + MER114 LTR ERV 267 648 0 1517 246 54 67 chr5 7985204 7985640 -195099892 + L1M4 LINE L1 3568 3991 -2155 180 0 0 0 chr5 7985640 7985660 -195099872 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1517 246 54 67 chr5 7985660 7985988 -195099544 + L1M4 LINE L1 3991 4322 -1824 21 36 0 0 chr5 7986007 7986035 -195099497 + AT_rich Low_complexity Low_complexity 1 28 0 1200 198 31 0 chr5 7986058 7986348 -195099184 - L1MC2 LINE L1 -5 7764 6150 7023 211 33 10 chr5 7986369 7986423 -195099109 - L1MC3 LINE L1 -461 7324 7273 2209 119 48 20 chr5 7986423 7986775 -195098757 - THE1B LTR MaLR -2 362 1 7023 211 33 10 chr5 7986775 7988458 -195097074 - L1MC3 LINE L1 -512 7273 5547 34 55 0 0 chr5 7989287 7989342 -195096190 + AT_rich Low_complexity Low_complexity 1 55 0 204 295 33 0 chr5 7989345 7989406 -195096126 - MIR SINE MIR -108 154 92 2107 136 3 0 chr5 7989661 7989971 -195095561 - AluSx SINE Alu -1 311 1 21 36 0 0 chr5 7990132 7990160 -195095372 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr5 7991914 7991941 -195093591 + AT_rich Low_complexity Low_complexity 1 27 0 413 252 119 13 chr5 7992306 7992457 -195093075 + MLT1E LTR MaLR 1 167 -426 581 249 94 133 chr5 7992474 7992932 -195092600 + MLT1E LTR MaLR 110 549 -105 375 23 0 0 chr5 7993774 7993818 -195091714 + (CA)n Simple_repeat Simple_repeat 1 44 0 198 103 0 0 chr5 7994000 7994029 -195091503 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 * 290 89 0 54 chr5 7994027 7994083 -195091449 + (GAAAA)n Simple_repeat Simple_repeat 1 53 0 387 0 0 0 chr5 7994436 7994479 -195091053 + (CA)n Simple_repeat Simple_repeat 2 44 0 2400 149 3 3 chr5 7995641 7996016 -195089516 - THE1C LTR MaLR 0 375 1 226 191 21 21 chr5 7996382 7996429 -195089103 - MER45A DNA AcHobo 0 178 132 2878 183 26 9 chr5 7996462 7996543 -195088989 - L1MA9 LINE L1 -295 6017 5939 273 57 0 0 chr5 7996543 7996578 -195088954 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2878 183 26 9 chr5 7996578 7997080 -195088452 - L1MA9 LINE L1 -373 5939 5424 1111 198 38 0 chr5 7997070 7997308 -195088224 + L1MA9 LINE L1 6030 6276 -36 * 242 275 11 22 chr5 7997322 7997413 -195088119 - MER45R DNA AcHobo -35 1546 1457 1000 189 0 0 chr5 7997416 7997585 -195087947 - AluSg/x SINE Alu -19 291 123 3909 200 35 4 chr5 7997651 7998572 -195086960 - MER45R DNA AcHobo -98 1483 535 3386 139 46 56 chr5 7998966 7999591 -195085941 + LTR31 LTR ERV1 1 619 0 776 275 77 77 chr5 8000657 8001148 -195084384 - LTR33A LTR ERVL -2 521 31 2103 118 0 7 chr5 8001233 8001529 -195084003 + AluSg SINE Alu 1 294 -16 973 88 0 0 chr5 8001616 8001741 -195083791 - AluSg/x SINE Alu -14 298 174 1059 237 5 0 chr5 8001792 8002011 -195083521 + MLT1B LTR MaLR 1 220 -170 414 125 0 0 chr5 8002010 8002066 -195083466 + MLT1B LTR MaLR 335 390 0 * 189 0 0 0 chr5 8002071 8002092 -195083440 + (T)n Simple_repeat Simple_repeat 1 21 0 1521 248 49 31 chr5 8003530 8004082 -195081450 - L1ME2 LINE L1 -19 6145 5584 389 183 14 0 chr5 8004121 8004192 -195081340 - L1MC3 LINE L1 -836 6949 6878 3185 250 45 56 chr5 8004198 8005903 -195079629 - L1ME2 LINE L1 -2111 4035 2480 620 145 17 25 chr5 8005760 8006002 -195079530 - L1MA7 LINE L1 0 6291 5946 * 806 257 29 20 chr5 8006023 8006366 -195079166 - L1ME2 LINE L1 -3652 2494 2149 684 195 38 0 chr5 8006552 8006711 -195078821 + L1MB7 LINE L1 6011 6175 -9 277 325 25 0 chr5 8008025 8008105 -195077427 + MIR SINE MIR 26 107 -155 3070 59 0 0 chr5 8008257 8008647 -195076885 + L1PA8 LINE L1 5783 6172 0 829 292 49 49 chr5 8008725 8009132 -195076400 - L1ME3A LINE L1 -41 6129 5723 331 309 102 12 chr5 8009234 8009436 -195076096 - MLT1E LTR MaLR -362 180 1 276 295 33 16 chr5 8009499 8009621 -195075911 - MER104 DNA Tc2 -56 124 1 308 284 140 34 chr5 8010185 8010449 -195075083 + L1ME4a LINE L1 5759 6050 -71 308 306 145 30 chr5 8010864 8011319 -195074213 + L1ME LINE L1 5321 5829 -333 566 282 30 30 chr5 8011397 8011631 -195073901 + HAL1 LINE L1 1248 1481 -1026 1350 194 90 4 chr5 8011634 8011912 -195073620 + AluJo SINE Alu 1 302 -10 1317 283 110 41 chr5 8011912 8012696 -195072836 + HAL1 LINE L1 1570 2407 -100 55 86 0 0 chr5 8012737 8012876 -195072656 + AT_rich Low_complexity Low_complexity 1 139 0 535 236 43 7 chr5 8013990 8014130 -195071402 + LTR52 LTR ERVL 277 421 0 2372 180 40 67 chr5 8017193 8018036 -195067496 - MER21A LTR ERV1 -1 930 1 399 223 8 40 chr5 8020094 8020226 -195065306 + L1MB7 LINE L1 6058 6182 -1 708 218 81 0 chr5 8020866 8021040 -195064492 - MER5A DNA MER1_type -1 188 1 207 88 0 0 chr5 8021615 8021649 -195063883 + (T)n Simple_repeat Simple_repeat 1 34 0 1273 113 9 5 chr5 8021867 8022079 -195063453 - Tigger7 DNA MER2_type -40 2447 2235 267 214 0 18 chr5 8022077 8022133 -195063399 - Tigger7 DNA MER2_type -284 55 1 * 23 0 0 0 chr5 8022220 8022243 -195063289 + AT_rich Low_complexity Low_complexity 1 23 0 367 215 99 25 chr5 8022694 8022815 -195062717 - MER5A DNA MER1_type -1 188 59 24 32 0 0 chr5 8022941 8022972 -195062560 + AT_rich Low_complexity Low_complexity 1 31 0 2650 35 0 10 chr5 8023151 8023465 -195062067 + AluY SINE Alu 1 311 0 22 35 0 0 chr5 8023527 8023556 -195061976 + AT_rich Low_complexity Low_complexity 1 29 0 1292 128 0 0 chr5 8024199 8024386 -195061146 + AluSg/x SINE Alu 126 312 0 315 0 0 0 chr5 8024558 8024593 -195060939 + (CA)n Simple_repeat Simple_repeat 2 36 0 34 84 0 0 chr5 8024627 8024710 -195060822 + AT_rich Low_complexity Low_complexity 1 83 0 1375 136 80 31 chr5 8024987 8025273 -195060259 + THE1C LTR MaLR 1 300 -75 3739 164 50 10 chr5 8025296 8025977 -195059555 + L1P3 LINE L1 21 728 -5733 459 228 63 16 chr5 8025977 8026104 -195059428 + MLT2F LTR ERVL 531 663 0 1228 278 33 14 chr5 8026104 8026525 -195059007 + L1ME2 LINE L1 5727 6155 -9 285 257 14 0 chr5 8026527 8026601 -195058931 + L1MC4a LINE L1 6351 6425 -1383 * 1246 226 104 44 chr5 8026592 8027119 -195058413 + L1MC4 LINE L1 7483 8041 -1 266 329 129 34 chr5 8027711 8028023 -195057509 - L2 LINE L2 -243 3070 2729 246 136 0 0 chr5 8028327 8028371 -195057161 + (CCA)n Simple_repeat Simple_repeat 1 44 0 213 290 0 10 chr5 8028379 8028479 -195057053 + (CAA)n Simple_repeat Simple_repeat 2 100 0 3487 80 4 6 chr5 8028974 8029470 -195056062 + L1PA8 LINE L1 5675 6169 0 2060 146 132 5 chr5 8029881 8030259 -195055273 + MSTA LTR MaLR 3 428 0 9571 121 2 0 chr5 8030549 8032808 -195052724 + L1PA8 LINE L1 3908 6169 -3 25 0 0 0 chr5 8032815 8032840 -195052692 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr5 8033020 8033063 -195052469 + AT_rich Low_complexity Low_complexity 1 43 0 315 346 12 0 chr5 8033356 8033518 -195052014 + T-rich Low_complexity Low_complexity 3 166 0 819 231 29 0 chr5 8033999 8034172 -195051360 - MER45A DNA AcHobo 0 178 1 587 353 39 24 chr5 8034355 8034689 -195050843 + MLT1J LTR MaLR 17 355 -156 335 255 32 21 chr5 8034861 8034955 -195050577 + MLT1L LTR MaLR 311 405 -210 207 0 0 0 chr5 8035017 8035040 -195050492 + (A)n Simple_repeat Simple_repeat 1 23 0 2251 85 0 53 chr5 8035968 8036286 -195049246 - AluSp SINE Alu -12 301 1 2295 137 11 8 chr5 8036286 8036644 -195048888 - THE1B LTR MaLR -5 359 1 724 260 29 0 chr5 8038204 8038377 -195047155 - MER45A DNA AcHobo 0 178 1 2057 158 97 8 chr5 8039131 8039524 -195046008 + MSTA LTR MaLR 1 428 0 192 318 45 27 chr5 8040572 8040682 -195044850 - L2 LINE L2 0 3272 3161 375 288 101 14 chr5 8040843 8040982 -195044550 + MIR SINE MIR 95 245 -17 2046 180 26 0 chr5 8042336 8042714 -195042818 - MLT1B LTR MaLR 0 390 3 2179 104 0 0 chr5 8042773 8043088 -195042444 - AluY SINE Alu 0 315 1 764 161 0 36 chr5 8043159 8043327 -195042205 - Tigger7 DNA MER2_type -96 2395 2234 263 259 0 0 chr5 8043322 8043376 -195042156 - Tigger7 DNA MER2_type -2432 55 2 * 3245 249 95 40 chr5 8043377 8045878 -195039654 - L1 LINE L1 -2816 4290 1926 408 20 0 0 chr5 8045878 8045927 -195039605 + (TG)n Simple_repeat Simple_repeat 2 50 0 3245 249 95 40 chr5 8045927 8046068 -195039464 - L1 LINE L1 -5180 1926 1794 1584 176 70 25 chr5 8046068 8046427 -195039105 + THE1C LTR MaLR 1 375 0 3245 249 95 40 chr5 8046427 8046868 -195038664 - L1 LINE L1 -5312 1794 1383 201 220 20 0 chr5 8047396 8047446 -195038086 - MER5B DNA MER1_type -127 51 1 23 0 0 0 chr5 8047898 8047921 -195037611 + AT_rich Low_complexity Low_complexity 1 23 0 4783 172 27 5 chr5 8049734 8050617 -195034915 + MER4D LTR ERV1 1 903 0 197 309 109 48 chr5 8051213 8051378 -195034154 + MIR SINE MIR 7 181 -81 1777 168 10 30 chr5 8051873 8052177 -195033355 + AluJb SINE Alu 3 300 -12 2795 200 20 75 chr5 8052369 8053100 -195032432 + LTR8 LTR ERV1 1 691 0 3644 174 13 14 chr5 8053223 8053929 -195031603 - MER67C LTR ERV1 -4 706 2 2022 136 95 3 chr5 8054030 8054511 -195031021 + LTR49 LTR ERV1 1 595 0 22 0 0 0 chr5 8054589 8054611 -195030921 + AT_rich Low_complexity Low_complexity 1 22 0 6125 156 13 8 chr5 8055710 8056782 -195028750 - Tigger2 DNA MER2_type -1 2717 1640 711 220 7 0 chr5 8057385 8057526 -195028006 - MER57B-int LTR ERV1 -1443 6094 5953 552 143 10 10 chr5 8057540 8057638 -195027894 + MER4A LTR ERV1 1 98 -566 1560 144 157 82 chr5 8057638 8058014 -195027518 + MER4A LTR ERV1 261 664 0 663 358 17 33 chr5 8058017 8058709 -195026823 - MER57B-int LTR ERV1 -1874 2773 2093 * 1410 255 17 43 chr5 8058680 8059163 -195026369 - MER57B-int LTR ERV1 -1791 5746 5277 254 359 0 0 chr5 8059241 8059319 -195026213 - MER57B-int LTR ERV1 -2940 3861 3784 265 315 0 27 chr5 8060630 8060741 -195024791 - MER57B-int LTR ERV1 -4345 3411 3304 207 0 0 0 chr5 8061966 8061989 -195023543 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2023 142 7 0 chr5 8062723 8063018 -195022514 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr5 8063018 8063041 -195022491 + AT_rich Low_complexity Low_complexity 1 23 0 2544 69 0 0 chr5 8063155 8063459 -195022073 + AluY SINE Alu 1 304 -7 369 277 44 38 chr5 8063637 8063796 -195021736 - MER57B-int LTR ERV1 -7375 162 3 1313 224 46 53 chr5 8063818 8064199 -195021333 - MER57B LTR ERV1 -5 429 50 2332 129 8 21 chr5 8064199 8064579 -195020953 + THE1C LTR MaLR 1 375 0 1313 224 46 53 chr5 8064579 8064629 -195020903 - MER57B LTR ERV1 -384 50 1 21 0 0 0 chr5 8064935 8064956 -195020576 + AT_rich Low_complexity Low_complexity 1 21 0 2173 112 23 3 chr5 8065140 8065473 -195020059 - AluSg SINE Alu 0 339 1 387 363 29 29 chr5 8066074 8066245 -195019287 - MIR3 SINE MIR -22 186 16 207 161 0 0 chr5 8066318 8066349 -195019183 + (ATG)n Simple_repeat Simple_repeat 3 33 0 202 305 0 37 chr5 8067040 8067122 -195018410 + MIR SINE MIR 153 231 -31 9370 122 18 7 chr5 8067474 8068939 -195016593 + MER52-int LTR ERV1 5611 7091 0 924 234 17 80 chr5 8068944 8069648 -195015884 + MER52A LTR ERV1 283 1459 -147 403 272 5 60 chr5 8069628 8069812 -195015720 + MER52A LTR ERV1 1582 1755 0 * 645 296 68 27 chr5 8069970 8070338 -195015194 + L1ME3A LINE L1 3034 3416 -2730 1422 210 0 11 chr5 8070342 8070618 -195014914 - MER68 LTR ERV1 0 562 290 239 321 36 0 chr5 8070632 8070769 -195014763 + L1ME3A LINE L1 3503 3644 -2502 2038 155 11 6 chr5 8070896 8071251 -195014281 + THE1C LTR MaLR 19 375 0 9261 127 40 41 chr5 8071251 8072833 -195012699 + THE1C-int LTR MaLR 1 1580 0 2386 127 19 3 chr5 8072833 8073202 -195012330 + THE1C LTR MaLR 1 375 0 431 304 43 58 chr5 8073223 8073877 -195011655 + L1ME3A LINE L1 4062 4705 -1441 353 311 96 33 chr5 8073930 8074358 -195011174 + L1ME3A LINE L1 5404 5858 -312 1336 219 52 11 chr5 8074671 8075037 -195010495 + L1MC4 LINE L1 6699 7079 -963 515 267 0 0 chr5 8075040 8075175 -195010357 + L1MC4a LINE L1 7160 7294 -514 531 283 98 4 chr5 8075249 8075493 -195010039 + L1MC4 LINE L1 7632 7898 -144 521 306 0 8 chr5 8075847 8075981 -195009551 + MIR SINE MIR 20 152 -110 1104 148 136 47 chr5 8075985 8076302 -195009230 + MER4A LTR ERV1 1 345 -319 489 142 242 8 chr5 8076434 8076554 -195008978 + MER4C LTR ERV1 300 447 -18 1261 277 124 15 chr5 8076622 8077163 -195008369 - MER90 LTR ERV1 -2 573 11 2366 66 0 3 chr5 8078120 8078408 -195007124 + AluY SINE Alu 1 287 -24 622 258 148 9 chr5 8078433 8078662 -195006870 - MIR SINE MIR 0 262 2 22 0 0 0 chr5 8078895 8078917 -195006615 + AT_rich Low_complexity Low_complexity 1 22 0 1813 148 34 14 chr5 8079031 8079328 -195006204 - AluJb SINE Alu -9 303 1 747 248 96 11 chr5 8079368 8079650 -195005882 + L2 LINE L2 1812 2117 -1197 449 211 159 9 chr5 8079672 8079904 -195005628 - MER97a DNA MER1_type? -42 852 586 354 284 93 19 chr5 8080796 8080958 -195004574 - MLT1I LTR MaLR -10 399 226 22 70 0 0 chr5 8082379 8082422 -195003110 + AT_rich Low_complexity Low_complexity 1 43 0 334 346 100 4 chr5 8083088 8083328 -195002204 + L2 LINE L2 2621 2883 -431 24 32 0 0 chr5 8083484 8083515 -195002017 + AT_rich Low_complexity Low_complexity 1 31 0 319 326 58 7 chr5 8083781 8083919 -195001613 + MIR SINE MIR 8 152 -110 349 297 99 56 chr5 8085773 8086005 -194999527 + MIR SINE MIR 19 260 -2 199 229 169 36 chr5 8086000 8086083 -194999449 - L2 LINE L2 -33 3280 3187 * 1881 129 161 13 chr5 8086937 8087310 -194998222 - MSTA LTR MaLR 0 428 1 2299 117 3 0 chr5 8087629 8087938 -194997594 + AluSg SINE Alu 1 310 0 509 146 0 0 chr5 8088010 8088092 -194997440 - Tigger1 DNA MER2_type 0 2418 2337 * 5564 156 26 3 chr5 8088090 8089033 -194996499 - Tigger1 DNA MER2_type -1393 1025 56 195 42 0 0 chr5 8089033 8089057 -194996475 + (TA)n Simple_repeat Simple_repeat 1 24 0 5564 156 26 3 chr5 8089057 8089115 -194996417 - Tigger1 DNA MER2_type -2362 56 1 309 261 268 0 chr5 8090253 8090395 -194995137 + MIR SINE MIR 72 251 -11 212 195 39 104 chr5 8090479 8090556 -194994976 + MIR3 SINE MIR 101 172 -36 1559 290 47 24 chr5 8091161 8092466 -194993066 - ERVL LTR ERVL -1916 3848 2416 1113 292 84 11 chr5 8092533 8092999 -194992533 - ERVL LTR ERVL -3462 2302 1803 2493 60 0 0 chr5 8093108 8093406 -194992126 + AluY SINE Alu 1 298 -13 808 224 24 0 chr5 8093461 8093626 -194991906 + FRAM SINE Alu 1 166 -10 1926 178 21 40 chr5 8094437 8094859 -194990673 + MLT2D LTR ERVL 1 414 0 656 238 0 0 chr5 8095253 8095375 -194990157 + FLAM_C SINE Alu 3 124 -19 727 204 151 70 chr5 8095480 8095837 -194989695 + MLT1B LTR MaLR 1 386 -4 7229 134 21 5 chr5 8095930 8097205 -194988327 - Tigger4(Zombi) DNA MER2_type -1 2730 1443 783 97 8 8 chr5 8097217 8097341 -194988191 + MER4A LTR ERV1 1 124 -540 311 111 0 19 chr5 8097341 8097395 -194988137 + (GAAA)n Simple_repeat Simple_repeat 1 53 0 1247 137 155 161 chr5 8097405 8097947 -194987585 + MER4A LTR ERV1 126 664 0 7517 153 16 8 chr5 8097947 8099268 -194986264 - Tigger4(Zombi) DNA MER2_type -1297 1434 103 1069 140 57 83 chr5 8099472 8099736 -194985796 + THE1C LTR MaLR 1 257 -118 272 357 43 47 chr5 8100745 8101022 -194984510 + L2 LINE L2 1742 2017 -1297 513 167 0 0 chr5 8101507 8101609 -194983923 + (TCCA)n Simple_repeat Simple_repeat 1 102 0 609 336 119 30 chr5 8103529 8103559 -194981973 + L2 LINE L2 2721 2747 -566 1523 154 67 83 chr5 8103559 8103994 -194981538 + MSTB1 LTR MaLR 1 428 -4 609 336 119 30 chr5 8103994 8104485 -194981047 + L2 LINE L2 2747 3294 -19 349 210 40 30 chr5 8106368 8106468 -194979064 - MER94 DNA DNA -33 101 1 2870 94 18 16 chr5 8106924 8106972 -194978560 - L1PB2 LINE L1 -2 6149 6103 2326 124 34 8 chr5 8106972 8107327 -194978205 + THE1B LTR MaLR 1 364 0 2870 94 18 16 chr5 8107327 8107716 -194977816 - L1PB2 LINE L1 -48 6103 5711 22 0 0 0 chr5 8107784 8107806 -194977726 + AT_rich Low_complexity Low_complexity 1 22 0 2018 114 0 0 chr5 8108323 8108594 -194976938 + AluSc SINE Alu 35 305 -4 22 0 0 0 chr5 8108691 8108713 -194976819 + AT_rich Low_complexity Low_complexity 1 22 0 2848 7 0 0 chr5 8110040 8110347 -194975185 - AluYa5 SINE Alu -4 307 1 2100 121 0 0 chr5 8110465 8110776 -194974756 + AluSc SINE Alu 1 311 0 744 241 43 35 chr5 8110866 8111123 -194974409 + MER90 LTR ERV1 7 265 -310 678 158 201 11 chr5 8111137 8111321 -194974211 + MER90 LTR ERV1 382 600 -14 3393 227 48 43 chr5 8112400 8113533 -194971999 + MER52A LTR ERV1 56 1193 -562 338 183 0 0 chr5 8113540 8113600 -194971932 + MER52A LTR ERV1 1696 1755 0 * 792 203 154 24 chr5 8113600 8113845 -194971687 + MLT1B LTR MaLR 114 390 0 2183 111 7 3 chr5 8113914 8114211 -194971321 + AluSp SINE Alu 12 309 -4 452 283 34 34 chr5 8114313 8114546 -194970986 - L1ME1 LINE L1 -6 6160 5928 532 224 0 9 chr5 8114840 8114956 -194970576 + L1MDb LINE L1 43 157 -6252 1738 162 68 31 chr5 8114956 8115107 -194970425 + THE1B LTR MaLR 1 145 -219 2183 131 0 0 chr5 8115107 8115405 -194970127 + AluSq SINE Alu 1 298 -15 1738 162 68 31 chr5 8115405 8115604 -194969928 + THE1B LTR MaLR 145 364 0 4548 227 62 49 chr5 8115644 8117357 -194968175 - L1MDb LINE L1 -4672 1734 8 1594 209 42 27 chr5 8117411 8118118 -194967414 + L1MD1 LINE L1 4968 5848 -394 2483 60 0 0 chr5 8118118 8118419 -194967113 + AluY SINE Alu 1 301 -10 1594 209 42 27 chr5 8118419 8118815 -194966717 + L1MD1 LINE L1 5848 6236 -6 2779 256 99 37 chr5 8119145 8119516 -194966016 - L1MD3 LINE L1 -749 6192 5846 297 0 0 0 chr5 8119516 8119549 -194965983 + (TG)n Simple_repeat Simple_repeat 2 34 0 2779 256 99 37 chr5 8119549 8121667 -194963865 - L1MD3 LINE L1 -1095 5846 5156 2062 144 3 3 chr5 8121667 8121973 -194963559 - AluSc SINE Alu -3 306 1 2779 256 99 37 chr5 8121973 8122152 -194963380 - L1MD3 LINE L1 -1785 5156 4990 679 255 64 85 chr5 8122171 8122547 -194962985 - MSTD LTR MaLR -23 373 6 1289 293 57 18 chr5 8122554 8123446 -194962086 - L1MD3 LINE L1 -2029 4912 3986 401 231 56 42 chr5 8123508 8123651 -194961881 - L1MD3 LINE L1 -4451 2490 2346 336 48 0 0 chr5 8123706 8123748 -194961784 + (CA)n Simple_repeat Simple_repeat 2 43 0 1274 80 0 45 chr5 8123751 8123802 -194961730 - L1P5 LINE L1 -370 5781 5729 1908 134 7 20 chr5 8123802 8124100 -194961432 - AluSq SINE Alu -19 294 1 1274 80 0 45 chr5 8124100 8124247 -194961285 - L1P5 LINE L1 -422 5729 5592 738 257 58 56 chr5 8124237 8124650 -194960882 - L1MD3 LINE L1 -4888 1535 1122 * 506 310 77 75 chr5 8125249 8125688 -194959844 - L1MD3 LINE L1 -5604 818 379 363 191 0 0 chr5 8126250 8126313 -194959219 - MER4A LTR ERV1 -224 440 378 3281 217 62 72 chr5 8126313 8128370 -194957162 - HERVH LTR ERV1 -5666 2047 1 1241 173 121 72 chr5 8128370 8128799 -194956733 - LTR7 LTR ERV1 0 450 1 1905 229 69 9 chr5 8128958 8129491 -194956041 + MER34B LTR ERV1 1 565 0 269 136 0 0 chr5 8129714 8129758 -194955774 + L1MB1 LINE L1 6125 6168 0 1556 139 25 68 chr5 8129842 8130202 -194955330 - MER4A LTR ERV1 0 664 262 438 144 89 0 chr5 8130203 8130293 -194955239 - MER4A LTR ERV1 -566 98 1 237 281 21 42 chr5 8130474 8130570 -194954962 - L1MDb LINE L1 -6004 405 312 226 279 36 0 chr5 8130820 8130931 -194954601 + L1ME LINE L1 5677 5791 -330 2261 76 3 0 chr5 8131166 8131467 -194954065 + AluY SINE Alu 1 302 -9 380 213 8 0 chr5 8132911 8133033 -194952499 + (TA)n Simple_repeat Simple_repeat 2 124 0 2408 63 3 0 chr5 8133635 8133935 -194951597 + AluY SINE Alu 1 301 -10 22 56 0 0 chr5 8134434 8134470 -194951062 + AT_rich Low_complexity Low_complexity 1 36 0 12122 28 4 0 chr5 8134820 8137013 -194948519 + L1PA3 LINE L1 3883 6085 -70 889 177 7 131 chr5 8137137 8137420 -194948112 + MLT1A1 LTR MaLR 116 363 -2 287 284 53 110 chr5 8139039 8139321 -194946211 - L2 LINE L2 -19 3253 2988 198 326 33 33 chr5 8139681 8139773 -194945759 + L2 LINE L2 3162 3253 -19 27 29 0 0 chr5 8142267 8142301 -194943231 + AT_rich Low_complexity Low_complexity 1 34 0 6196 205 28 5 chr5 8143049 8144549 -194940983 + L1 LINE L1 3478 5011 -1135 460 215 56 0 chr5 8144550 8144657 -194940875 + MER68 LTR ERV1 450 562 0 488 302 19 6 chr5 8145030 8145189 -194940343 - MIR SINE MIR -42 220 60 2295 87 0 10 chr5 8146337 8146648 -194938884 + AluY SINE Alu 1 308 -3 324 343 112 12 chr5 8147122 8147364 -194938168 - L2 LINE L2 -1059 2255 1990 332 227 114 23 chr5 8147411 8147543 -194937989 - L2 LINE L2 -58 3255 3112 2044 121 0 39 chr5 8148310 8148616 -194936916 + AluY SINE Alu 3 296 -15 2589 133 30 0 chr5 8149241 8149640 -194935892 + LTR57 LTR ERVL 1 411 0 281 26 26 0 chr5 8150639 8150677 -194934855 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 446 215 37 0 chr5 8151417 8151524 -194934008 - L1MA4 LINE L1 -220 6080 5970 1930 167 3 3 chr5 8153392 8153697 -194931835 + AluSx SINE Alu 1 305 -7 4734 234 29 8 chr5 8153871 8155249 -194930283 - L1M4 LINE L1 -1109 5037 3631 552 173 29 7 chr5 8155609 8155748 -194929784 + CT-rich Low_complexity Low_complexity 3 144 0 2531 107 28 0 chr5 8158264 8158618 -194926914 - THE1B LTR MaLR 0 364 1 27 29 0 0 chr5 8159645 8159679 -194925853 + AT_rich Low_complexity Low_complexity 1 34 0 274 256 0 0 chr5 8160041 8160123 -194925409 - L1ME LINE L1 -415 5755 5674 2096 137 23 0 chr5 8160784 8161126 -194924406 + L1PA14 LINE L1 5812 6161 0 281 231 128 26 chr5 8162651 8162768 -194922764 - LTR16A LTR ERVL -2 448 320 350 306 22 55 chr5 8163236 8163419 -194922113 + MER5B DNA MER1_type 2 178 0 392 304 155 19 chr5 8165581 8165788 -194919744 - MIR SINE MIR 0 262 28 233 294 0 78 chr5 8165811 8165913 -194919619 - L2 LINE L2 -24 3289 3196 939 234 20 16 chr5 8166778 8167022 -194918510 + L1PB4 LINE L1 5898 6142 -14 1490 196 54 4 chr5 8167034 8167431 -194918101 - L1ME LINE L1 -744 5589 5176 234 0 0 0 chr5 8167437 8167463 -194918069 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 407 136 0 0 chr5 8168224 8168290 -194917242 + Alu SINE Alu 235 300 -12 22 0 0 0 chr5 8168357 8168379 -194917153 + AT_rich Low_complexity Low_complexity 1 22 0 256 24 24 24 chr5 8169342 8169384 -194916148 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7715 17 2 0 chr5 8169384 8170699 -194914833 - L1PA3 LINE L1 -10 6145 4827 23 92 0 0 chr5 8170928 8170993 -194914539 + AT_rich Low_complexity Low_complexity 1 65 0 1863 162 72 17 chr5 8171753 8172098 -194913434 + THE1B LTR MaLR 1 364 0 1558 152 194 8 chr5 8172312 8172668 -194912864 - MSTA LTR MaLR 0 428 7 21 36 0 0 chr5 8173206 8173234 -194912298 + AT_rich Low_complexity Low_complexity 1 28 0 955 142 17 94 chr5 8173602 8173872 -194911660 - L1M1 LINE L1 -743 5403 5223 1093 256 0 9 chr5 8173930 8174251 -194911281 - L1MCa LINE L1 -3231 3195 2878 242 122 0 20 chr5 8174251 8174300 -194911232 + (TCC)n Simple_repeat Simple_repeat 3 50 0 836 261 80 60 chr5 8174302 8174931 -194910601 - L1MCa LINE L1 -3558 2868 2253 2329 94 3 0 chr5 8174931 8175229 -194910303 + AluSp SINE Alu 2 300 -13 836 261 80 60 chr5 8175229 8176021 -194909511 - L1MCa LINE L1 -4173 2253 1275 227 191 16 16 chr5 8176089 8176152 -194909380 - Charlie2a DNA MER1_type -691 2171 2109 27 29 0 0 chr5 8176190 8176224 -194909308 + AT_rich Low_complexity Low_complexity 1 34 0 999 260 32 63 chr5 8176237 8176790 -194908742 - Charlie2a DNA MER1_type -781 2081 1546 2277 47 22 0 chr5 8178877 8179228 -194906304 - AluY SINE Alu 0 311 5 1870 100 82 0 chr5 8179551 8179831 -194905701 - AluSp SINE Alu -10 303 1 443 127 0 0 chr5 8180020 8180091 -194905441 - MADE1 DNA Mariner -9 71 1 21 0 0 0 chr5 8180177 8180198 -194905334 + AT_rich Low_complexity Low_complexity 1 21 0 218 222 34 34 chr5 8180482 8180599 -194904933 + (TA)n Simple_repeat Simple_repeat 1 117 0 1281 147 77 18 chr5 8182250 8182522 -194903010 + MER46B DNA MER2_type 1 163 -73 2065 144 0 22 chr5 8182732 8183051 -194902481 - AluSx SINE Alu 0 312 1 2031 163 0 0 chr5 8183103 8183397 -194902135 - AluSx SINE Alu -18 294 1 506 218 34 58 chr5 8183773 8183979 -194901553 - L1MA10 LINE L1 0 6334 6134 4794 167 11 9 chr5 8184277 8185638 -194899894 + L1PA16 LINE L1 4784 6160 -6 268 342 9 0 chr5 8186033 8186147 -194899385 - L1MCa LINE L1 -6066 541 427 253 288 0 0 chr5 8186353 8186433 -194899099 - MER89-int LTR ERV1 -134 6667 6588 1699 216 17 11 chr5 8187120 8187476 -194898056 + MLT1A1 LTR MaLR 4 361 -4 835 328 30 7 chr5 8187481 8187914 -194897618 + L1MEc LINE L1 81 523 -5873 210 288 0 0 chr5 8189999 8190058 -194895474 + CT-rich Low_complexity Low_complexity 1 59 0 312 193 84 0 chr5 8190889 8190972 -194894560 - MLT1E3 LTR MaLR -9 615 526 637 186 87 50 chr5 8191289 8191450 -194894082 + MER5A DNA MER1_type 18 184 -5 359 243 29 71 chr5 8192015 8192225 -194893307 - L1MA10 LINE L1 0 6334 6134 257 208 14 0 chr5 8193322 8193394 -194892138 + (TA)n Simple_repeat Simple_repeat 1 73 0 25 31 0 0 chr5 8193738 8193770 -194891762 + AT_rich Low_complexity Low_complexity 1 32 0 200 299 75 0 chr5 8194444 8194511 -194891021 + MIR SINE MIR 110 181 -81 346 262 135 24 chr5 8195547 8195673 -194889859 - MER91C DNA MER1_type 0 140 1 300 269 35 28 chr5 8195793 8195938 -194889594 - LTR16C LTR ERVL -2 489 344 183 360 44 9 chr5 8201157 8201271 -194884261 - L2 LINE L2 -640 2674 2557 21 36 0 0 chr5 8202540 8202568 -194882964 + AT_rich Low_complexity Low_complexity 1 28 0 2509 51 0 3 chr5 8203133 8203426 -194882106 + AluY SINE Alu 1 292 -19 2547 159 4 50 chr5 8203832 8204296 -194881236 - MER65A LTR ERV1 0 445 3 256 318 65 18 chr5 8205844 8206014 -194879518 + LTR41 LTR ERVL 8 185 -588 1248 255 53 44 chr5 8206679 8207091 -194878441 + LTR40a LTR ERVL 104 519 0 943 238 0 15 chr5 8207766 8207968 -194877564 + L1PA13 LINE L1 2 200 -6587 427 288 53 82 chr5 8207952 8208271 -194877261 + L1PA13 LINE L1 417 726 -6061 * 5462 266 26 35 chr5 8208453 8211298 -194874234 + L1PA13 LINE L1 1323 4136 -2661 1692 171 60 41 chr5 8211315 8211683 -194873849 - THE1C LTR MaLR 0 375 1 6488 157 16 56 chr5 8211683 8212958 -194872574 - THE1C-int LTR MaLR 0 1580 357 1120 231 3 60 chr5 8213079 8213378 -194872154 + AluJb SINE Alu 1 282 -30 1946 255 47 55 chr5 8213395 8214290 -194871242 - L1M4 LINE L1 -2614 3532 2645 457 248 32 16 chr5 8214292 8214417 -194871115 - L1MCb LINE L1 -5349 696 570 258 289 33 25 chr5 8214504 8214625 -194870907 - L1MCb LINE L1 -5475 570 449 439 255 54 88 chr5 8216909 8217148 -194868384 - MLT1J LTR MaLR -53 458 228 269 253 13 13 chr5 8217290 8217365 -194868167 - MLT1L LTR MaLR -540 75 1 387 41 0 0 chr5 8219188 8219237 -194866295 + (TG)n Simple_repeat Simple_repeat 2 50 0 209 182 0 65 chr5 8219756 8219833 -194865699 + A-rich Low_complexity Low_complexity 3 74 0 330 302 90 54 chr5 8220130 8220352 -194865180 - L2 LINE L2 -9 3304 3075 1024 282 68 21 chr5 8220450 8220875 -194864657 - L2 LINE L2 -476 2838 2394 491 294 11 39 chr5 8221115 8221295 -194864237 + L2 LINE L2 2512 2686 -628 395 292 19 43 chr5 8222118 8222327 -194863205 - MLT1J1 LTR MaLR -9 437 234 210 143 0 0 chr5 8222886 8222921 -194862611 + (GGGAA)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr5 8224257 8224279 -194861253 + AT_rich Low_complexity Low_complexity 1 22 0 380 258 147 26 chr5 8224376 8224566 -194860966 - L1MC4a LINE L1 -86 7722 7510 15472 169 45 62 chr5 8225044 8229873 -194855659 - L1 LINE L1 -2029 5536 773 5855 109 5 6 chr5 8229873 8230654 -194854878 + LTR17 LTR ERV1 1 780 0 15472 169 45 62 chr5 8230654 8230727 -194854805 - L1 LINE L1 -6792 773 700 5796 126 24 27 chr5 8230790 8231809 -194853723 - L1P3 LINE L1 -4734 1141 271 1548 105 9 0 chr5 8231985 8232204 -194853328 + L1PA14 LINE L1 5939 6159 -2 247 366 0 0 chr5 8232595 8232696 -194852836 + L2 LINE L2 3208 3308 -5 415 325 33 4 chr5 8233769 8233955 -194851577 - MLT1J2 LTR MaLR -15 534 347 434 316 26 0 chr5 8234574 8234729 -194850803 - MLT1J2 LTR MaLR -187 263 105 582 277 15 42 chr5 8234742 8235002 -194850530 + L1ME3A LINE L1 5917 6169 -1 1163 159 8 41 chr5 8235020 8235189 -194850343 + L1ME LINE L1 5192 5352 -814 1340 193 77 11 chr5 8235189 8235463 -194850069 + AluJb SINE Alu 1 292 -20 1163 159 8 41 chr5 8235463 8235578 -194849954 + L1ME LINE L1 5352 5469 -697 24 32 0 0 chr5 8236498 8236529 -194849003 + AT_rich Low_complexity Low_complexity 1 31 0 1982 141 63 30 chr5 8238040 8238403 -194847129 - THE1C LTR MaLR 0 375 1 1622 178 57 48 chr5 8238832 8238854 -194846678 + MLT1A2 LTR MaLR 1 21 -353 2665 136 30 28 chr5 8238854 8239280 -194846252 + MSTA LTR MaLR 1 427 -1 1622 178 57 48 chr5 8239280 8239347 -194846185 + MLT1A2 LTR MaLR 21 86 -288 1498 196 94 24 chr5 8239347 8239688 -194845844 - MLT1A1 LTR MaLR 0 365 1 1622 178 57 48 chr5 8239688 8239968 -194845564 + MLT1A2 LTR MaLR 86 374 0 1450 170 0 8 chr5 8241191 8241438 -194844094 - L1MA10 LINE L1 -2 6332 6088 1042 156 50 6 chr5 8241439 8241618 -194843914 + MSTA LTR MaLR 1 187 -241 843 83 0 0 chr5 8241627 8241736 -194843796 + MSTA LTR MaLR 320 428 0 2545 200 32 6 chr5 8241755 8242254 -194843278 - L1MB1 LINE L1 -119 6070 5559 299 188 41 18 chr5 8243004 8243174 -194842358 + (TG)n Simple_repeat Simple_repeat 1 174 0 556 91 27 59 chr5 8243210 8243396 -194842136 + (TG)n Simple_repeat Simple_repeat 1 180 0 281 184 29 29 chr5 8243507 8243681 -194841851 + (TG)n Simple_repeat Simple_repeat 1 174 0 482 155 39 13 chr5 8243700 8243936 -194841596 + (TG)n Simple_repeat Simple_repeat 1 242 0 601 170 7 85 chr5 8245165 8245235 -194840297 + MLT1D LTR MaLR 376 431 -74 1993 160 0 0 chr5 8245235 8245547 -194839985 - AluSx SINE Alu 0 312 1 601 170 7 85 chr5 8245547 8245617 -194839915 + MLT1D LTR MaLR 431 505 0 1858 135 14 14 chr5 8245859 8246156 -194839376 - L1P3 LINE L1 -5578 297 1 * 2476 271 52 11 chr5 8246150 8246818 -194838714 - L1M1 LINE L1 -6853 712 17 216 379 9 26 chr5 8246897 8247013 -194838519 + MER5A DNA MER1_type 67 180 -9 21 57 0 0 chr5 8247732 8247767 -194837765 + AT_rich Low_complexity Low_complexity 1 35 0 634 244 76 0 chr5 8248157 8248329 -194837203 + MER5A DNA MER1_type 2 186 -3 813 105 29 6 chr5 8249819 8249991 -194835541 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 1216 233 11 32 chr5 8249991 8250339 -194835193 - MLT2C1 LTR ERVL -54 343 3 2342 103 0 10 chr5 8250548 8250859 -194834673 + AluSq SINE Alu 1 308 -5 313 278 62 0 chr5 8251373 8251470 -194834062 - HAL1 LINE L1 -857 1650 1548 692 285 92 15 chr5 8251532 8251998 -194833534 + MER20B DNA MER1_type 281 782 -1 247 274 62 84 chr5 8252032 8252211 -194833321 - HAL1 LINE L1 -2331 176 2 429 316 49 49 chr5 8252402 8252646 -194832886 + MIR SINE MIR 19 262 0 22 56 0 0 chr5 8253305 8253341 -194832191 + AT_rich Low_complexity Low_complexity 1 36 0 2406 181 45 22 chr5 8253997 8254599 -194830933 - L1MA8 LINE L1 -59 6232 5617 3123 169 53 46 chr5 8254600 8255579 -194829953 + L1MA8 LINE L1 4634 5607 -684 365 0 22 0 chr5 8256087 8256132 -194829400 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 2357 52 10 0 chr5 8256141 8256429 -194829103 - AluY SINE Alu -20 291 1 259 266 21 63 chr5 8257561 8257704 -194827828 - MER65B LTR ERV1 -394 137 1 1961 79 4 0 chr5 8258081 8258335 -194827197 + AluY SINE Alu 57 311 0 452 282 18 72 chr5 8258345 8258622 -194826910 + MLT1E1-int LTR MaLR 969 1230 -141 1188 227 109 91 chr5 8258736 8259362 -194826170 + MLT1E1 LTR MaLR 18 654 0 542 261 0 0 chr5 8261440 8261559 -194823973 - Tigger3(Golem) DNA MER2_type -2909 120 2 499 277 114 42 chr5 8262717 8263024 -194822508 + LTR16B LTR ERVL 1 329 -135 21 36 0 0 chr5 8263931 8263959 -194821573 + AT_rich Low_complexity Low_complexity 1 28 0 661 154 8 8 chr5 8265168 8265298 -194820234 + GA-rich Low_complexity Low_complexity 3 132 0 19769 58 1 3 chr5 8265359 8268712 -194816820 - L1PA6 LINE L1 -6 6148 2805 2794 114 18 5 chr5 8269913 8270351 -194815181 - L1PB2 LINE L1 -3 6148 5705 350 103 88 0 chr5 8270791 8270859 -194814673 - L1P5 LINE L1 -373 5778 5705 1728 102 33 126 chr5 8272096 8272430 -194813102 + AluSq SINE Alu 1 303 -10 527 259 74 54 chr5 8272433 8272730 -194812802 + LTR33A LTR ERVL 221 523 0 740 301 107 46 chr5 8272862 8273387 -194812145 - MLT1G1 LTR MaLR -36 559 3 1842 127 3 45 chr5 8273674 8274010 -194811522 - AluSx SINE Alu 0 326 3 472 269 15 0 chr5 8274574 8274708 -194810824 - MER119 DNA MER1_type 0 583 448 984 242 81 20 chr5 8274742 8275039 -194810493 - MER119 DNA MER1_type -268 315 1 687 188 227 0 chr5 8275047 8275223 -194810309 + MER20 DNA MER1_type 1 216 -3 1487 237 121 29 chr5 8275364 8275820 -194809712 + MLT2B1 LTR ERVL 13 510 -10 305 287 42 48 chr5 8276551 8276718 -194808814 - L2 LINE L2 -273 2999 2834 2136 111 0 10 chr5 8277594 8277891 -194807641 - AluSg SINE Alu -16 294 1 7856 12 0 0 chr5 8277912 8279136 -194806396 - L1PA2 LINE L1 0 6155 4934 3884 33 0 0 chr5 8279136 8279624 -194805908 + L1PA2 LINE L1 4440 4927 -1219 964 261 118 52 chr5 8280020 8280502 -194805030 + MER90 LTR ERV1 92 605 -9 261 57 0 0 chr5 8283088 8283123 -194802409 + (CA)n Simple_repeat Simple_repeat 1 35 0 310 348 65 0 chr5 8284986 8285124 -194800408 - MIR SINE MIR -29 233 87 184 405 22 0 chr5 8285267 8285356 -194800176 + MER5A DNA MER1_type 9 99 -90 431 104 0 0 chr5 8285487 8285554 -194799978 + L1P LINE L1 2913 2979 -3167 3578 64 2 0 chr5 8285559 8286014 -194799518 + L1PA7 LINE L1 5695 6150 -4 482 155 39 13 chr5 8287005 8287241 -194798291 + (CA)n Simple_repeat Simple_repeat 1 242 0 281 184 29 29 chr5 8287260 8287434 -194798098 + (CA)n Simple_repeat Simple_repeat 1 174 0 556 91 27 59 chr5 8287545 8287731 -194797801 + (CA)n Simple_repeat Simple_repeat 1 180 0 329 182 47 12 chr5 8287767 8287937 -194797595 + (CA)n Simple_repeat Simple_repeat 1 176 0 2309 200 32 6 chr5 8288687 8289186 -194796346 + L1MB1 LINE L1 5559 6070 -119 784 83 0 0 chr5 8289205 8289314 -194796218 - MSTA LTR MaLR 0 428 320 955 153 51 6 chr5 8289326 8289502 -194796030 - MSTA LTR MaLR -244 184 1 1322 170 0 8 chr5 8289503 8289750 -194795782 + L1MA10 LINE L1 6088 6332 -2 1463 181 57 48 chr5 8290973 8291253 -194794279 - MLT1A2 LTR MaLR 0 374 98 1347 196 94 24 chr5 8291253 8291594 -194793938 + MLT1A1 LTR MaLR 1 365 0 1463 181 57 48 chr5 8291594 8291661 -194793871 - MLT1A2 LTR MaLR -276 98 21 2462 136 30 30 chr5 8291661 8292088 -194793444 - MSTA LTR MaLR -1 427 1 1463 181 57 48 chr5 8292088 8292110 -194793422 - MLT1A2 LTR MaLR -353 21 1 1815 141 63 30 chr5 8292539 8292902 -194792630 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr5 8294413 8294444 -194791088 + AT_rich Low_complexity Low_complexity 1 31 0 1016 167 8 41 chr5 8295364 8295479 -194790053 - L1ME LINE L1 -697 5469 5352 1360 193 77 11 chr5 8295479 8295753 -194789779 - AluJb SINE Alu -20 292 1 1016 167 8 41 chr5 8295753 8295922 -194789610 - L1ME LINE L1 -814 5352 5192 24 0 0 0 chr5 8295932 8295956 -194789576 + AT_rich Low_complexity Low_complexity 1 24 0 498 288 16 33 chr5 8295957 8296200 -194789332 - L1ME3A LINE L1 -15 6155 5917 358 313 27 0 chr5 8296213 8296360 -194789172 + MLT1J2 LTR MaLR 105 255 -195 365 320 26 0 chr5 8297019 8297172 -194788360 + MLT1H LTR MaLR 378 534 -15 240 333 0 43 chr5 8298246 8298363 -194787169 - L2 LINE L2 -5 3308 3197 2066 96 7 0 chr5 8298738 8299040 -194786492 - L1PA14 LINE L1 -2 6159 5856 2279 103 0 22 chr5 8299041 8299352 -194786180 - AluSq SINE Alu -9 304 1 21 0 0 0 chr5 8300642 8300663 -194784869 + AT_rich Low_complexity Low_complexity 1 21 0 673 305 181 25 chr5 8300713 8301304 -194784228 - L1M4 LINE L1 -1858 4288 3606 1885 138 164 11 chr5 8301353 8301724 -194783808 + MSTA LTR MaLR 1 428 0 24 0 0 0 chr5 8301833 8301857 -194783675 + AT_rich Low_complexity Low_complexity 1 24 0 328 333 30 0 chr5 8301876 8302008 -194783524 - L1M4 LINE L1 -2355 3791 3656 213 178 0 0 chr5 8302208 8302253 -194783279 + (TA)n Simple_repeat Simple_repeat 1 45 0 367 267 10 0 chr5 8302264 8302365 -194783167 - MLT2D LTR ERVL -42 478 377 842 205 16 11 chr5 8302389 8302579 -194782953 - MLT2D LTR ERVL -218 196 6 399 298 59 50 chr5 8302624 8302844 -194782688 + MIR3 SINE MIR 14 236 -26 2576 140 63 2 chr5 8302985 8303429 -194782103 + LOR1a LTR ERV1 19 489 -8 209 417 45 15 chr5 8305042 8305174 -194780358 + MIR3 SINE MIR 2 137 -71 1783 119 15 4 chr5 8307179 8307440 -194778092 - AluSx SINE Alu -10 302 39 335 385 40 6 chr5 8307472 8307646 -194777886 + MIR SINE MIR 12 191 -71 23 86 0 0 chr5 8307717 8307775 -194777757 + AT_rich Low_complexity Low_complexity 1 58 0 268 277 69 15 chr5 8308078 8308208 -194777324 - MER106B DNA MER1_type 0 1059 923 388 193 18 0 chr5 8308213 8308322 -194777210 + (TA)n Simple_repeat Simple_repeat 1 111 0 32 0 0 0 chr5 8309071 8309103 -194776429 + AT_rich Low_complexity Low_complexity 1 32 0 42 57 0 0 chr5 8310421 8310491 -194775041 + AT_rich Low_complexity Low_complexity 1 70 0 317 227 152 8 chr5 8311104 8311236 -194774296 + MER58C DNA MER1_type 54 204 -11 303 307 45 25 chr5 8311636 8311838 -194773694 + HAL1 LINE L1 27 232 -2275 512 214 71 0 chr5 8312098 8312238 -194773294 - L1MEc LINE L1 -4306 2090 1941 2315 209 31 45 chr5 8312339 8312960 -194772572 - MER90 LTR ERV1 0 614 3 539 192 33 0 chr5 8313080 8313200 -194772332 + MLT2E LTR ERVL 504 627 -1 518 319 65 4 chr5 8313232 8313461 -194772071 + HAL1 LINE L1 357 599 -1908 463 282 88 12 chr5 8313700 8314355 -194771177 - L1MEc LINE L1 -3922 2474 1702 708 250 96 33 chr5 8315491 8315877 -194769655 - MLT1C LTR MaLR -3 464 2 596 332 42 14 chr5 8315891 8316105 -194769427 - MIR SINE MIR -38 224 5 338 233 14 0 chr5 8316112 8316185 -194769347 + MIR SINE MIR 113 186 -76 203 407 68 0 chr5 8316352 8316470 -194769062 + L2 LINE L2 3147 3272 0 227 114 23 0 chr5 8316871 8316915 -194768617 + (TA)n Simple_repeat Simple_repeat 2 46 0 211 315 62 23 chr5 8316986 8317116 -194768416 + MIR SINE MIR 57 191 -71 188 81 48 65 chr5 8317168 8317230 -194768302 + (CAGAGA)n Simple_repeat Simple_repeat 6 66 0 1091 197 140 9 chr5 8318520 8318835 -194766697 - MLT1A1 LTR MaLR 0 365 10 2336 104 0 0 chr5 8319190 8319488 -194766044 - AluSg SINE Alu -10 300 3 225 270 150 10 chr5 8320017 8320117 -194765415 + MER5A DNA MER1_type 3 116 -73 4152 151 17 6 chr5 8321324 8322027 -194763505 - MER50 LTR ERV1 -23 711 1 23 33 0 0 chr5 8323053 8323083 -194762449 + AT_rich Low_complexity Low_complexity 1 30 0 656 250 83 10 chr5 8323524 8323728 -194761804 - MER20 DNA MER1_type 0 219 1 378 281 79 31 chr5 8323746 8323974 -194761558 - L1M4 LINE L1 -1380 4766 4528 25 65 0 0 chr5 8324182 8324228 -194761304 + AT_rich Low_complexity Low_complexity 1 46 0 699 244 114 0 chr5 8324446 8324647 -194760885 - MER58A DNA MER1_type 0 224 1 30 0 0 0 chr5 8324958 8324988 -194760544 + AT_rich Low_complexity Low_complexity 1 30 0 5319 76 4 3 chr5 8324988 8325674 -194759858 - L1PA7 LINE L1 -5 6149 5460 195 69 0 0 chr5 8325674 8325703 -194759829 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5319 76 4 3 chr5 8325703 8325727 -194759805 - L1PA7 LINE L1 -694 5460 5438 624 110 0 0 chr5 8325758 8325849 -194759683 - L1P3 LINE L1 -678 5476 5386 947 114 0 0 chr5 8325869 8325992 -194759540 - AluSg SINE Alu -187 123 1 9313 104 20 7 chr5 8325992 8326931 -194758601 - L1P3 LINE L1 -747 5399 4433 290 45 23 0 chr5 8326931 8326975 -194758557 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 9313 104 20 7 chr5 8326975 8327519 -194758013 - L1P3 LINE L1 -1713 4433 3897 1523 210 0 52 chr5 8327790 8328099 -194757433 + AluJo SINE Alu 3 295 -17 1249 240 72 33 chr5 8328497 8328556 -194756976 + L1M4 LINE L1 4732 4787 -1359 2057 154 0 6 chr5 8328556 8328868 -194756664 + AluSx SINE Alu 1 310 -2 1249 240 72 33 chr5 8328868 8329449 -194756083 + L1M4 LINE L1 4787 5397 -749 395 156 0 0 chr5 8329458 8329522 -194756010 + L1PA13 LINE L1 1 64 -6723 4786 244 100 18 chr5 8329529 8331533 -194753999 + L1PA13 LINE L1 617 2794 -4003 240 59 0 0 chr5 8331588 8331622 -194753910 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 35604 36 26 1 chr5 8331622 8337116 -194748416 - L1PA3 LINE L1 -13 6142 1 2423 51 0 10 chr5 8337951 8338245 -194747287 - AluY SINE Alu -8 303 13 234 281 11 0 chr5 8339723 8339812 -194745720 - L1P2 LINE L1 -355 5799 5710 905 343 43 16 chr5 8340057 8340606 -194744926 - Zaphod DNA AcHobo -3420 611 48 428 217 11 0 chr5 8340606 8340698 -194744834 - MER58 DNA MER1_type -3 2417 2325 703 177 65 16 chr5 8340701 8340887 -194744645 - MER58 DNA MER1_type -2224 196 2 721 219 92 15 chr5 8341105 8341301 -194744231 - L1MC2 LINE L1 -25 6319 6109 1274 79 23 0 chr5 8341360 8341537 -194743995 - THE1C LTR MaLR -194 181 1 1398 171 14 27 chr5 8341568 8341860 -194743672 - MLT2C2 LTR ERVL -175 289 2 380 288 50 31 chr5 8342198 8342358 -194743174 + MIR SINE MIR 30 192 -70 1973 41 0 4 chr5 8342711 8343013 -194742519 - L1PA4 LINE L1 0 6155 5895 3130 164 25 3 chr5 8344959 8345551 -194739981 - L1MA6 LINE L1 0 6300 5696 1829 144 33 0 chr5 8346032 8346328 -194739204 + AluSc SINE Alu 1 305 0 545 273 51 16 chr5 8346847 8347100 -194738432 - L1MC5 LINE L1 -722 7239 6978 362 268 36 0 chr5 8347141 8347253 -194738279 - L1ME1 LINE L1 -12 6154 6039 318 295 129 14 chr5 8347253 8347320 -194738212 - L1ME1 LINE L1 -831 5411 5353 1983 89 19 4 chr5 8347320 8347591 -194737941 - AluSq SINE Alu 0 313 39 318 295 129 14 chr5 8347591 8347662 -194737870 - L1ME1 LINE L1 -889 5353 5257 21 0 0 0 chr5 8347899 8347920 -194737612 + AT_rich Low_complexity Low_complexity 1 21 0 726 216 13 65 chr5 8347949 8348082 -194737450 - L1MB8 LINE L1 -9 6169 6051 1248 206 68 84 chr5 8348082 8348593 -194736939 - MLT1D LTR MaLR -2 503 1 726 216 13 65 chr5 8348593 8348690 -194736842 - L1MB8 LINE L1 -127 6051 5951 21 0 0 0 chr5 8349106 8349127 -194736405 + AT_rich Low_complexity Low_complexity 1 21 0 2096 160 22 75 chr5 8349601 8350008 -194735524 - MLT1C LTR MaLR 0 467 89 2224 99 6 13 chr5 8350008 8350322 -194735210 + AluSp SINE Alu 1 312 -1 2096 160 22 75 chr5 8350322 8350407 -194735125 - MLT1C LTR MaLR -378 89 1 691 199 42 30 chr5 8352503 8352669 -194732863 + MER50 LTR ERV1 1 168 -566 * 3257 181 26 25 chr5 8352663 8353140 -194732392 + MER50 LTR ERV1 86 567 -167 2156 108 0 0 chr5 8353140 8353438 -194732094 - AluSc SINE Alu 0 298 1 3257 181 26 25 chr5 8353438 8353607 -194731925 + MER50 LTR ERV1 567 734 0 332 318 86 18 chr5 8354787 8355067 -194730465 + L1M4 LINE L1 4243 4541 -1605 1748 191 7 0 chr5 8355326 8355630 -194729902 + AluJb SINE Alu 1 306 -6 524 28 0 28 chr5 8355633 8355704 -194729828 + (GAAA)n Simple_repeat Simple_repeat 4 72 0 340 347 48 42 chr5 8355740 8356051 -194729481 + L1M4 LINE L1 4799 5111 -1035 1742 138 31 57 chr5 8356862 8357247 -194728285 + THE1C LTR MaLR 1 375 0 2467 55 7 0 chr5 8358736 8359044 -194726488 - AluY SINE Alu -1 310 1 2310 189 83 12 chr5 8360384 8360962 -194724570 - L1MC2 LINE L1 0 7747 6137 252 250 11 57 chr5 8360966 8361054 -194724478 - MLT1F1 LTR MaLR -459 108 25 470 196 130 0 chr5 8361084 8361222 -194724310 - L1MC3 LINE L1 -719 7066 6911 224 211 34 41 chr5 8362683 8362830 -194722702 + (TATAA)n Simple_repeat Simple_repeat 3 148 0 23 0 0 0 chr5 8362870 8362893 -194722639 + AT_rich Low_complexity Low_complexity 1 23 0 1249 253 180 17 chr5 8363394 8363860 -194721672 + MLT1E LTR MaLR 1 542 -51 202 136 17 34 chr5 8363878 8363937 -194721595 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 501 89 40 0 chr5 8363978 8364079 -194721453 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 1193 232 26 53 chr5 8364100 8364440 -194721092 - MLT2C1 LTR ERVL -65 332 2 201 259 17 0 chr5 8364967 8365025 -194720507 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 27 29 0 0 chr5 8366157 8366191 -194719341 + AT_rich Low_complexity Low_complexity 1 34 0 7963 220 21 19 chr5 8367292 8369414 -194716118 + L1 LINE L1 3014 5139 -1007 2937 95 24 7 chr5 8369407 8369922 -194715610 + L1P5 LINE L1 5175 5700 -451 * 424 95 24 0 chr5 8369924 8370008 -194715524 + (TA)n Simple_repeat Simple_repeat 1 86 0 1444 105 81 0 chr5 8370242 8370490 -194715042 - L1MA1 LINE L1 0 6302 6035 4321 119 17 22 chr5 8370522 8371006 -194714526 - L1MA2 LINE L1 0 6304 5824 2108 114 7 13 chr5 8371006 8371314 -194714218 - AluSq SINE Alu -7 306 1 4321 119 17 22 chr5 8371314 8371544 -194713988 - L1MA2 LINE L1 -480 5824 5594 2049 124 7 0 chr5 8373243 8373533 -194711999 - AluSx SINE Alu -20 292 1 203 337 63 11 chr5 8374151 8374246 -194711286 - MIR SINE MIR 0 262 163 1793 265 52 42 chr5 8374545 8375242 -194710290 + L1M3e LINE L1 466 1169 -6320 1657 288 53 21 chr5 8375313 8375602 -194709930 + L1M3e LINE L1 2008 2286 -5279 225 65 0 0 chr5 8375602 8375633 -194709899 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1657 288 53 21 chr5 8375633 8376170 -194709362 + L1M3e LINE L1 2286 2861 -4704 1766 179 18 25 chr5 8376205 8376601 -194708931 - L1 LINE L1 -2146 4000 3608 225 237 75 75 chr5 8377780 8377873 -194707659 + MIR SINE MIR 96 188 -74 641 221 7 0 chr5 8378070 8378206 -194707326 - FRAM SINE Alu -2 174 38 544 204 91 11 chr5 8378225 8378411 -194707121 + L1M4 LINE L1 4404 4604 -1542 398 262 54 50 chr5 8378422 8378643 -194706889 + L1MA9 LINE L1 6017 6238 -74 528 131 15 41 chr5 8378696 8379046 -194706486 + (TA)n Simple_repeat Simple_repeat 1 340 0 697 231 36 32 chr5 8379138 8379359 -194706173 + L1M4 LINE L1 4841 5062 -1084 426 308 0 8 chr5 8379376 8379496 -194706036 - L2 LINE L2 -1467 1847 1729 189 216 34 0 chr5 8379509 8379597 -194705935 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 211 321 95 42 chr5 8379655 8379823 -194705709 + MIR SINE MIR 73 249 -13 21 57 0 0 chr5 8380568 8380603 -194704929 + AT_rich Low_complexity Low_complexity 1 35 0 1865 163 137 11 chr5 8381832 8382212 -194703320 - MSTA LTR MaLR 0 428 1 264 278 60 20 chr5 8384135 8384286 -194701246 + Charlie7 DNA MER1_type 2434 2590 -22 436 273 10 11 chr5 8386308 8386483 -194699049 + L1M4 LINE L1 3764 3937 -2209 189 107 0 0 chr5 8386531 8386559 -194698973 + (CATATA)n Simple_repeat Simple_repeat 6 33 0 415 324 130 12 chr5 8386581 8386927 -194698605 + L1M4 LINE L1 4139 4525 -1621 1215 194 22 86 chr5 8387519 8387843 -194697689 + MLT1B LTR MaLR 88 390 0 207 333 13 13 chr5 8387905 8387983 -194697549 - L2 LINE L2 -6 3266 3189 23 33 0 0 chr5 8388823 8388853 -194696679 + AT_rich Low_complexity Low_complexity 1 30 0 1964 130 161 34 chr5 8389076 8389403 -194696129 + MSTA LTR MaLR 3 386 -42 2150 106 21 58 chr5 8389403 8389779 -194695753 - THE1B LTR MaLR 0 364 3 1964 130 161 34 chr5 8389779 8389829 -194695703 + MSTA LTR MaLR 386 428 0 24 53 0 0 chr5 8389882 8389920 -194695612 + AT_rich Low_complexity Low_complexity 1 38 0 345 329 57 33 chr5 8390565 8390865 -194694667 + L1M4 LINE L1 2893 3224 -2922 433 260 86 88 chr5 8390941 8391233 -194694299 + L1M4 LINE L1 4266 4558 -1588 798 21 0 0 chr5 8391233 8391326 -194694206 + L1PA5 LINE L1 6056 6148 -6 433 260 86 88 chr5 8391326 8391417 -194694115 + L1M4 LINE L1 4558 4648 -1498 1497 203 6 19 chr5 8391505 8391820 -194693712 + AluJo SINE Alu 1 311 -1 2272 117 3 0 chr5 8391915 8392223 -194693309 + AluSg SINE Alu 1 309 -1 599 253 78 60 chr5 8393232 8393814 -194691718 + L1M3a LINE L1 1011 1585 -4811 3815 115 21 2 chr5 8393814 8394388 -194691144 + L1PA15 LINE L1 5578 6162 -3 599 253 78 60 chr5 8394388 8394494 -194691038 + L1M3a LINE L1 1585 1688 -4708 822 55 9 0 chr5 8394506 8394615 -194690917 + L1PA4 LINE L1 6043 6152 -3 999 213 42 42 chr5 8395241 8395480 -194690052 - MER8 DNA MER2_type 0 239 1 354 216 14 0 chr5 8395500 8395574 -194689958 - L1ME2 LINE L1 -15 6149 6075 21 36 0 0 chr5 8395944 8395972 -194689560 + AT_rich Low_complexity Low_complexity 1 28 0 346 223 11 43 chr5 8396398 8396492 -194689040 + MER8 DNA MER2_type 96 186 -53 2056 125 0 10 chr5 8396880 8397177 -194688355 + AluSg SINE Alu 1 294 -16 675 35 0 0 chr5 8397341 8397427 -194688105 - L1PA4 LINE L1 -3 6152 6067 23 0 0 0 chr5 8397454 8397477 -194688055 + AT_rich Low_complexity Low_complexity 1 23 0 2371 89 3 0 chr5 8400319 8400623 -194684909 + AluSp SINE Alu 1 305 -8 2476 18 0 0 chr5 8400756 8401029 -194684503 + AluYb8 SINE Alu 36 308 -10 977 155 0 7 chr5 8401936 8402091 -194683441 + THE1-int LTR MaLR 922 1075 -505 2707 189 33 2 chr5 8402192 8402693 -194682839 + MSTA-int LTR MaLR 1124 1643 -8 2457 151 48 22 chr5 8402701 8403118 -194682414 + MSTA LTR MaLR 1 428 0 211 273 269 33 chr5 8403732 8404003 -194681529 + L2 LINE L2 1765 2099 -1215 275 324 182 42 chr5 8404474 8405161 -194680371 + L2 LINE L2 2472 3253 -19 42896 37 24 4 chr5 8405913 8411936 -194673596 + L1PA3 LINE L1 13 6155 0 5051 167 16 6 chr5 8412372 8413228 -194672304 + MER49 LTR ERV1 1 865 -58 2385 86 0 16 chr5 8413271 8413585 -194671947 - AluY SINE Alu -2 309 1 254 257 16 44 chr5 8416195 8416378 -194669154 + (CAA)n Simple_repeat Simple_repeat 3 180 0 223 261 18 42 chr5 8416596 8416761 -194668771 + (CAA)n Simple_repeat Simple_repeat 3 163 0 22 88 0 0 chr5 8417375 8417432 -194668100 + AT_rich Low_complexity Low_complexity 1 57 0 382 331 78 9 chr5 8417476 8417807 -194667725 - L1ME3 LINE L1 -337 5825 5455 196 109 22 22 chr5 8417809 8417855 -194667677 + (TA)n Simple_repeat Simple_repeat 2 47 0 250 310 62 9 chr5 8418404 8418517 -194667015 + MIR SINE MIR 143 261 -1 3339 128 18 22 chr5 8418828 8419383 -194666149 + L1MA6 LINE L1 5742 6294 -6 22 0 0 0 chr5 8419391 8419413 -194666119 + AT_rich Low_complexity Low_complexity 1 22 0 282 226 0 48 chr5 8419569 8419653 -194665879 - L1M4 LINE L1 -3024 3122 3043 434 221 69 8 chr5 8419654 8419785 -194665747 - L1M4 LINE L1 -3053 3093 2955 744 194 106 17 chr5 8419795 8420032 -194665500 - MER58 DNA MER1_type -2 2418 2161 397 217 8 70 chr5 8420206 8420335 -194665197 - L2 LINE L2 0 3313 3193 3097 216 49 10 chr5 8420384 8421115 -194664417 - L1 LINE L1 -1193 4953 4194 29 60 0 0 chr5 8421328 8421378 -194664154 + AT_rich Low_complexity Low_complexity 1 50 0 2081 110 3 7 chr5 8421961 8422251 -194663281 + AluSc SINE Alu 3 291 -18 22 56 0 0 chr5 8422528 8422564 -194662968 + AT_rich Low_complexity Low_complexity 1 36 0 376 160 12 8 chr5 8422606 8422684 -194662848 + THE1C LTR MaLR 1 79 -276 225 191 0 0 chr5 8422690 8422737 -194662795 - L1P LINE L1 -1774 4372 4326 1779 162 18 30 chr5 8422739 8423073 -194662459 + THE1C LTR MaLR 46 375 0 207 271 0 0 chr5 8423676 8423724 -194661808 + CT-rich Low_complexity Low_complexity 4 51 0 1718 57 13 44 chr5 8424558 8424787 -194660745 - AluY SINE Alu -11 300 79 731 256 58 18 chr5 8424852 8425075 -194660457 + MIR SINE MIR 31 262 0 1310 174 42 51 chr5 8425132 8425280 -194660252 + MER33 DNA MER1_type 9 157 -2428 1705 56 0 0 chr5 8425280 8425507 -194660025 - AluY SINE Alu 0 312 86 1310 174 42 51 chr5 8425507 8425668 -194659864 + MER33 DNA MER1_type 157 316 -8 203 411 11 39 chr5 8426578 8426758 -194658774 - L3 LINE CR1 -34 1543 1369 4713 297 96 27 chr5 8427153 8428993 -194656539 + L2 LINE L2 420 2461 -853 279 0 0 0 chr5 8428993 8429024 -194656508 + (CA)n Simple_repeat Simple_repeat 2 32 0 4713 297 96 27 chr5 8429024 8429565 -194655967 + L2 LINE L2 2461 2964 -350 206 129 61 38 chr5 8429718 8429850 -194655682 + (TA)n Simple_repeat Simple_repeat 1 135 0 364 275 53 23 chr5 8429906 8430037 -194655495 + L2 LINE L2 3175 3309 -4 235 335 163 10 chr5 8430051 8430260 -194655272 - L3 LINE CR1 -96 1481 1241 409 254 46 56 chr5 8430932 8431129 -194654403 + MLT1F-int LTR MaLR 1163 1357 -14 993 284 104 6 chr5 8431156 8431491 -194654041 + MLT1F LTR MaLR 1 368 -174 202 286 250 27 chr5 8431600 8431712 -194653820 - L2 LINE L2 -10 3262 3126 224 272 66 73 chr5 8431977 8432113 -194653419 - L2 LINE L2 -337 2976 2842 2742 118 3 6 chr5 8432305 8432670 -194652862 + THE1B LTR MaLR 1 364 0 345 288 96 0 chr5 8434083 8434208 -194651324 - MLT1F LTR MaLR -403 139 3 768 0 0 0 chr5 8438500 8438587 -194646945 - L1HS LINE L1 -2 6153 6067 2374 158 27 54 chr5 8440562 8440863 -194644669 - MLT1C LTR MaLR 0 467 182 1565 189 10 30 chr5 8440863 8441165 -194644367 - AluJo SINE Alu -16 296 1 2374 158 27 54 chr5 8441165 8441343 -194644189 - MLT1C LTR MaLR -285 182 1 23 33 0 0 chr5 8443063 8443093 -194642439 + AT_rich Low_complexity Low_complexity 1 30 0 4185 134 46 65 chr5 8443500 8444300 -194641232 + LTR1 LTR ERV1 1 785 0 425 329 22 36 chr5 8444475 8444700 -194640832 + MIR SINE MIR 29 250 -12 1522 148 19 11 chr5 8444904 8445174 -194640358 + L1MA8 LINE L1 6013 6284 -7 2548 84 0 0 chr5 8445228 8445539 -194639993 - AluSx SINE Alu -1 311 1 2455 170 34 5 chr5 8446190 8446637 -194638895 + L1MA4 LINE L1 5426 5885 -415 * 30560 115 7 22 chr5 8446635 8452792 -194632740 + L1PA7 LINE L1 316 6469 0 234 242 81 0 chr5 8453086 8453148 -194632384 + MIR SINE MIR 90 156 -106 1470 183 17 56 chr5 8453225 8453581 -194631951 + MLT1B LTR MaLR 1 342 -48 1914 105 14 31 chr5 8453581 8454081 -194631451 - MER51B LTR ERV1 0 377 1 353 68 0 0 chr5 8454081 8454125 -194631407 + MLT1B LTR MaLR 339 382 -8 21 0 0 0 chr5 8454675 8454696 -194630836 + AT_rich Low_complexity Low_complexity 1 21 0 206 250 95 24 chr5 8455790 8455874 -194629658 - L3 LINE CR1 -881 696 607 362 300 137 23 chr5 8456125 8456432 -194629100 - LTR16A LTR ERVL -5 445 104 28 29 0 0 chr5 8456969 8457004 -194628528 + AT_rich Low_complexity Low_complexity 1 35 0 22 70 0 0 chr5 8457150 8457193 -194628339 + AT_rich Low_complexity Low_complexity 1 43 0 201 315 12 30 chr5 8457889 8458024 -194627508 - MIR3 SINE MIR -53 155 23 2820 164 25 2 chr5 8460253 8460770 -194624762 - Tigger1 DNA MER2_type 0 2418 1890 913 195 53 73 chr5 8460794 8461096 -194624436 - PABL_B LTR ERV1 -23 644 349 306 327 23 55 chr5 8461102 8461319 -194624213 - PABL_B LTR ERV1 -457 210 1 5476 133 7 14 chr5 8461319 8462240 -194623292 - Tigger1 DNA MER2_type -534 1884 971 2479 84 0 0 chr5 8462484 8462794 -194622738 - AluY SINE Alu -1 310 1 4000 91 10 15 chr5 8462798 8463382 -194622150 - L1PA10 LINE L1 0 6168 5588 1751 136 58 14 chr5 8463382 8463918 -194621614 + L1PA10 LINE L1 4996 5558 -610 1078 237 159 0 chr5 8464097 8464469 -194621063 - MER74C LTR ERVL -27 433 3 192 77 0 0 chr5 8464469 8464495 -194621037 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 285 223 0 0 chr5 8465289 8465383 -194620149 + (TA)n Simple_repeat Simple_repeat 2 95 0 227 267 40 79 chr5 8465400 8465501 -194620031 + MIR3 SINE MIR 77 173 -35 526 223 32 13 chr5 8467035 8467192 -194618340 - L1MA10 LINE L1 -1 6333 6174 1395 204 106 31 chr5 8467206 8467594 -194617938 - L1MA9 LINE L1 -2 6310 5894 23 33 0 0 chr5 8467679 8467709 -194617823 + AT_rich Low_complexity Low_complexity 1 30 0 277 250 0 0 chr5 8469018 8469078 -194616454 + MER81 DNA DNA 29 88 -26 230 219 0 0 chr5 8470871 8470912 -194614620 + (TG)n Simple_repeat Simple_repeat 2 42 0 1229 256 20 6 chr5 8471587 8471931 -194613601 - MER89 LTR ERV1 -14 545 197 457 161 23 0 chr5 8471904 8471991 -194613541 - MER89 LTR ERV1 -470 89 1 * 2285 98 0 0 chr5 8473128 8473424 -194612108 + AluSq SINE Alu 1 296 -17 370 226 11 11 chr5 8476713 8476806 -194608726 - LTR16B LTR ERVL 0 464 372 291 314 188 19 chr5 8476815 8477124 -194608408 - L2 LINE L2 -1091 2223 1863 277 342 124 29 chr5 8477136 8477411 -194608121 - L2 LINE L2 -2782 532 232 43 20 0 0 chr5 8479094 8479144 -194606388 + AT_rich Low_complexity Low_complexity 1 50 0 1497 142 22 4 chr5 8479145 8479413 -194606119 - L1MA5A LINE L1 -4 6293 6021 487 268 18 0 chr5 8479561 8479725 -194605807 + L1MCa LINE L1 2064 2230 -4196 23 0 0 0 chr5 8479937 8479960 -194605572 + AT_rich Low_complexity Low_complexity 1 23 0 338 342 94 58 chr5 8481460 8481595 -194603937 - L2 LINE L2 0 3272 3143 2087 189 17 7 chr5 8481595 8482014 -194603518 + L1MA5 LINE L1 5871 6293 -7 338 342 94 58 chr5 8482014 8482241 -194603291 - L2 LINE L2 -129 3143 2897 369 122 0 10 chr5 8482412 8482496 -194603036 + L1PB4 LINE L1 5703 5784 -370 359 156 28 45 chr5 8482509 8482688 -194602844 + (TA)n Simple_repeat Simple_repeat 1 176 0 735 147 31 0 chr5 8482695 8482824 -194602708 + L1PB4 LINE L1 5776 5908 -248 4747 181 34 36 chr5 8482850 8484445 -194601087 - L1P5 LINE L1 -537 5617 4007 600 205 19 0 chr5 8484431 8484587 -194600945 + L1P5 LINE L1 3844 4002 -2144 * 600 290 22 11 chr5 8485828 8486011 -194599521 + MER5A DNA MER1_type 5 189 0 434 36 0 0 chr5 8486158 8486213 -194599319 - L1P LINE L1 -742 5413 5359 6195 29 1 0 chr5 8486213 8486937 -194598595 + L1PA3 LINE L1 5426 6152 -3 2466 72 0 0 chr5 8487310 8487602 -194597930 + AluY SINE Alu 1 292 -19 496 358 59 11 chr5 8487670 8487941 -194597591 - L2 LINE L2 -619 2695 2412 1705 186 3 43 chr5 8488473 8488528 -194597004 + MLT1A1 LTR MaLR 31 87 -278 1755 161 13 26 chr5 8488528 8488838 -194596694 + AluSx SINE Alu 1 306 -6 1705 186 3 43 chr5 8488838 8489131 -194596401 + MLT1A1 LTR MaLR 87 365 0 1415 190 196 0 chr5 8491069 8491427 -194594105 + MSTA LTR MaLR 1 428 0 215 351 60 8 chr5 8491510 8491644 -194593888 - MIR SINE MIR -3 259 119 399 41 0 0 chr5 8491888 8491937 -194593595 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 1880 142 17 3 chr5 8492083 8492372 -194593160 - AluSx SINE Alu -19 293 1 416 136 15 0 chr5 8492415 8492481 -194593051 + AluS SINE Alu 1 67 -246 21 36 0 0 chr5 8493132 8493160 -194592372 + AT_rich Low_complexity Low_complexity 1 28 0 242 246 35 18 chr5 8495655 8495769 -194589763 + (TA)n Simple_repeat Simple_repeat 2 117 0 243 79 0 0 chr5 8497929 8497967 -194587565 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 795 80 40 23 chr5 8497973 8498148 -194587384 + CT-rich Low_complexity Low_complexity 1 178 0 593 201 12 12 chr5 8498159 8498328 -194587204 + CT-rich Low_complexity Low_complexity 1 169 0 835 209 25 6 chr5 8498328 8498491 -194587041 - FRAM SINE Alu 0 166 1 21 0 0 0 chr5 8498898 8498919 -194586613 + AT_rich Low_complexity Low_complexity 1 21 0 216 350 49 7 chr5 8499896 8500039 -194585493 + L3 LINE CR1 1220 1368 -209 1934 114 21 25 chr5 8500067 8500347 -194585185 - AluSx SINE Alu -9 303 25 779 206 119 0 chr5 8500465 8500659 -194584873 - MER58A DNA MER1_type -1 223 7 328 344 129 46 chr5 8500798 8501208 -194584324 + L3 LINE CR1 1010 1453 -124 186 103 0 0 chr5 8501334 8501363 -194584169 + (T)n Simple_repeat Simple_repeat 1 29 0 4292 88 7 2 chr5 8501372 8501982 -194583550 - THE1B-int LTR MaLR -967 613 1 2091 133 44 33 chr5 8501982 8502342 -194583190 - THE1B LTR MaLR 0 364 1 774 156 143 111 chr5 8502359 8502603 -194582929 + MLT1B LTR MaLR 139 390 0 6914 68 13 0 chr5 8502807 8504038 -194581494 - L1PA8 LINE L1 -4 6168 4930 3271 28 0 0 chr5 8504398 8504795 -194580737 + L1PA4 LINE L1 5463 5859 -296 803 186 56 0 chr5 8504795 8504956 -194580576 + MLT1A1 LTR MaLR 196 365 0 4033 200 13 17 chr5 8505629 8506528 -194579004 + L1MCa LINE L1 302 1197 -5229 2258 233 2 2 chr5 8506556 8507019 -194578513 + L1PA13 LINE L1 1 463 -6324 5422 223 33 13 chr5 8507021 8508523 -194577009 + L1PA13 LINE L1 2532 4063 -2734 2941 168 11 13 chr5 8508540 8509078 -194576454 + L1PA15 LINE L1 5616 6154 -11 180 0 0 0 chr5 8509078 8509098 -194576434 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1098 194 92 9 chr5 8509112 8509437 -194576095 + L1MCa LINE L1 1210 1561 -4865 1923 159 25 27 chr5 8509438 8509803 -194575729 - THE1B LTR MaLR 0 364 1 2441 83 0 11 chr5 8509803 8510152 -194575380 - THE1B-int LTR MaLR 0 1580 1236 3094 87 2 68 chr5 8510164 8510668 -194574864 + MER9 LTR ERVK 41 511 0 2736 94 10 5 chr5 8510668 8511070 -194574462 + HERVK9 LTR ERVK 1 404 -5512 608 122 0 0 chr5 8511086 8511168 -194574364 - AluS SINE Alu -231 82 1 687 113 0 17 chr5 8511807 8511922 -194573610 - MER85 DNA T2_type 0 139 27 201 194 48 29 chr5 8512607 8512710 -194572822 + (TATAA)n Simple_repeat Simple_repeat 4 108 0 216 313 36 24 chr5 8513649 8513732 -194571800 - L2 LINE L2 -554 2760 2677 23 0 0 0 chr5 8514307 8514330 -194571202 + AT_rich Low_complexity Low_complexity 1 23 0 342 279 29 29 chr5 8514832 8514936 -194570596 - MER5B DNA MER1_type -63 115 12 4451 223 99 81 chr5 8515024 8517087 -194568445 + L1MDa LINE L1 1 2100 -4440 4386 236 54 30 chr5 8517055 8517932 -194567600 + L1MDa LINE L1 2385 3239 -3301 * 1704 179 0 48 chr5 8517932 8518108 -194567424 - AluJo SINE Alu -14 298 142 2167 107 19 10 chr5 8518108 8518417 -194567115 - AluSp SINE Alu -1 312 1 1704 179 0 48 chr5 8518417 8518553 -194566979 - AluJo SINE Alu -170 142 1 4386 236 54 30 chr5 8518553 8519493 -194566039 + L1MDa LINE L1 3239 4244 -2296 588 330 36 28 chr5 8519725 8520083 -194565449 + MLT1I LTR MaLR 47 407 -2 29 0 0 0 chr5 8520175 8520204 -194565328 + AT_rich Low_complexity Low_complexity 1 29 0 2349 58 0 7 chr5 8520663 8520956 -194564576 + AluY SINE Alu 1 291 -20 2823 10 0 0 chr5 8520958 8521266 -194564266 + AluY SINE Alu 1 308 -3 1638 206 30 30 chr5 8523024 8523389 -194562143 + MLT1A1 LTR MaLR 1 365 0 417 292 64 9 chr5 8524442 8524661 -194560871 + L1MEc LINE L1 1585 1815 -4581 1066 219 99 44 chr5 8524700 8525153 -194560379 - Charlie1b DNA MER1_type -6 517 40 25 31 0 0 chr5 8525176 8525208 -194560324 + AT_rich Low_complexity Low_complexity 1 32 0 620 257 70 63 chr5 8525213 8526144 -194559388 + L1MEc LINE L1 1871 2769 -3446 797 253 64 9 chr5 8526165 8526584 -194558948 + L1MEc LINE L1 2819 3260 -2955 6019 200 70 20 chr5 8526627 8527965 -194557567 + L1MCa LINE L1 49 1475 -4951 2569 115 13 8 chr5 8527965 8528338 -194557194 - THE1C LTR MaLR 0 375 1 6019 200 70 20 chr5 8528338 8528537 -194556995 + L1MCa LINE L1 1475 1663 -4763 2978 218 60 42 chr5 8528542 8529672 -194555860 - L1M1 LINE L1 -4161 3405 2098 761 175 0 0 chr5 8529717 8529837 -194555695 - FLAM_C SINE Alu -19 124 5 2884 226 53 7 chr5 8529900 8530780 -194554752 + L1 LINE L1 3036 3956 -2190 37 23 0 0 chr5 8530911 8530955 -194554577 + AT_rich Low_complexity Low_complexity 1 44 0 1320 271 58 23 chr5 8531120 8531409 -194554123 + L1MCa LINE L1 3026 3303 -3123 2177 109 14 0 chr5 8531409 8531702 -194553830 + AluSx SINE Alu 1 297 -15 1320 271 58 23 chr5 8531702 8532120 -194553412 + L1MCa LINE L1 3303 3758 -2668 230 250 0 15 chr5 8532455 8532523 -194553009 + L1MC4 LINE L1 6637 6703 -1339 331 151 41 0 chr5 8532523 8532596 -194552936 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 188 247 108 11 chr5 8533078 8533171 -194552361 + MIR SINE MIR 21 122 -86 183 323 10 42 chr5 8533395 8533491 -194552041 + MIR SINE MIR 99 191 -71 207 255 20 0 chr5 8535092 8535143 -194550389 + CT-rich Low_complexity Low_complexity 3 54 0 1500 209 16 33 chr5 8535198 8535456 -194550076 - MLT1A1 LTR MaLR -2 363 111 2380 140 48 27 chr5 8535456 8535869 -194549663 + MSTB LTR MaLR 5 426 0 1500 209 16 33 chr5 8535869 8535978 -194549554 - MLT1A1 LTR MaLR -254 111 2 2308 82 0 0 chr5 8536548 8536840 -194548692 + AluY SINE Alu 6 297 -14 349 93 147 27 chr5 8537007 8537082 -194548450 - L1PB1 LINE L1 -1 6150 6067 185 261 22 0 chr5 8537148 8537194 -194548338 + MIR SINE MIR 56 102 -160 696 242 54 112 chr5 8537589 8538052 -194547480 - LTR40c LTR ERVL -29 436 1 862 185 42 21 chr5 8538986 8539175 -194546357 + MLT1D LTR MaLR 1 193 -312 3144 229 286 23 chr5 8539178 8541391 -194544141 + L1M3e LINE L1 1 2790 -4317 1687 184 44 49 chr5 8541395 8541802 -194543730 - MSTC LTR MaLR -23 405 1 3514 247 102 109 chr5 8541802 8543019 -194542513 - MSTC-int LTR MaLR 0 1735 434 705 134 0 0 chr5 8543019 8543297 -194542235 + AluSg/x SINE Alu 185 462 0 3514 247 102 109 chr5 8543297 8543727 -194541805 - MSTC-int LTR MaLR -1301 434 2 1621 176 116 59 chr5 8543729 8544133 -194541399 - MSTC LTR MaLR 0 428 2 1090 244 174 16 chr5 8544134 8544871 -194540661 + L1MA8 LINE L1 2919 3773 -3792 * 2961 192 40 38 chr5 8544867 8545485 -194540047 + L1MA8 LINE L1 4466 5088 -2477 1643 214 0 3 chr5 8545485 8545796 -194539736 + AluJb SINE Alu 1 310 0 2961 192 40 38 chr5 8545796 8546011 -194539521 + L1MA8 LINE L1 5088 5301 -2264 1708 166 15 207 chr5 8546179 8546908 -194538624 + MER21A LTR ERV1 70 658 -273 6914 153 39 6 chr5 8546908 8549161 -194536371 + L1MA8 LINE L1 5340 7656 -54 491 273 98 69 chr5 8549163 8549614 -194535918 + L2 LINE L2 2469 2932 -382 277 169 84 28 chr5 8549619 8549690 -194535842 + MLT1B LTR MaLR 2 76 -314 375 368 78 59 chr5 8550222 8550646 -194534886 + L2 LINE L2 2828 3259 -13 279 0 0 0 chr5 8550663 8550694 -194534838 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 213 307 64 45 chr5 8551777 8551979 -194533553 + L2 LINE L2 1623 1828 -1486 910 84 0 53 chr5 8552002 8552027 -194533505 + (TTCC)n Simple_repeat Simple_repeat 1 203 0 910 84 0 53 chr5 8552027 8552217 -194533315 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 433 145 29 29 chr5 8552242 8552380 -194533152 + CT-rich Low_complexity Low_complexity 3 140 0 223 331 72 22 chr5 8552595 8552734 -194532798 + L2 LINE L2 2976 3121 -192 353 304 22 14 chr5 8552867 8553005 -194532527 - MIR SINE MIR -59 203 65 3417 151 16 71 chr5 8553424 8554155 -194531377 + LTR8 LTR ERV1 1 691 0 230 285 174 25 chr5 8554248 8554483 -194531049 - MLT1J2 LTR MaLR -128 322 53 671 174 81 19 chr5 8557176 8557337 -194528195 + MLT1B LTR MaLR 3 173 -217 357 321 30 0 chr5 8557384 8557435 -194528097 + CT-rich Low_complexity Low_complexity 2 50 -86 1784 171 26 20 chr5 8557435 8557740 -194527792 - AluJb SINE Alu -2 310 4 357 321 30 0 chr5 8557740 8557819 -194527713 + CT-rich Low_complexity Low_complexity 50 136 0 1091 170 20 0 chr5 8557819 8558019 -194527513 + MLT1B LTR MaLR 187 390 0 268 337 22 17 chr5 8558290 8558451 -194527081 + MIR SINE MIR 9 165 -60 383 268 96 19 chr5 8558729 8558886 -194526646 + MIR SINE MIR 48 216 -46 2060 149 0 0 chr5 8560593 8560886 -194524646 + AluSx SINE Alu 1 296 -16 257 0 30 0 chr5 8560886 8560919 -194524613 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 2060 149 0 0 chr5 8560919 8560934 -194524598 + AluSx SINE Alu 295 309 -3 211 325 90 32 chr5 8561524 8561671 -194523861 - MIR SINE MIR -63 145 19 31 26 0 0 chr5 8561854 8561892 -194523640 + AT_rich Low_complexity Low_complexity 1 38 0 465 297 82 39 chr5 8562027 8562283 -194523249 - L1M4c LINE L1 -4905 1479 1213 342 335 5 5 chr5 8562307 8562498 -194523034 + L1MEc LINE L1 1518 1708 -4688 622 297 97 56 chr5 8562534 8563017 -194522515 + L1MEc LINE L1 1768 2332 -4064 834 272 119 48 chr5 8563052 8563451 -194522081 + L1M4 LINE L1 3908 4277 -1869 1764 203 7 47 chr5 8563451 8563855 -194521677 - MLT1B LTR MaLR -2 388 1 834 272 119 48 chr5 8563855 8564621 -194520911 + L1M4 LINE L1 4277 5156 -990 669 172 57 9 chr5 8565106 8565275 -194520257 + MSTC LTR MaLR 1 204 -224 315 132 0 0 chr5 8565309 8565362 -194520170 + MSTC LTR MaLR 364 416 -12 295 341 142 24 chr5 8565657 8566031 -194519501 + L2 LINE L2 1282 1752 -1562 2075 82 25 11 chr5 8566031 8566343 -194519189 + AluSx SINE Alu 1 316 0 295 341 142 24 chr5 8566343 8566553 -194518979 + L2 LINE L2 1752 1936 -1378 42 37 0 37 chr5 8567821 8567903 -194517629 + AT_rich Low_complexity Low_complexity 1 79 0 1230 186 125 18 chr5 8567939 8568106 -194517426 - AluJb SINE Alu -3 309 161 216 0 0 0 chr5 8568106 8568130 -194517402 + (TAG)n Simple_repeat Simple_repeat 1 24 0 1230 186 125 18 chr5 8568130 8568241 -194517291 - AluJb SINE Alu -151 161 1 285 248 133 0 chr5 8568616 8568729 -194516803 + LTR16A LTR ERVL 323 450 0 829 123 77 0 chr5 8568902 8569032 -194516500 - AluSg/x SINE Alu -16 294 155 264 233 0 0 chr5 8570045 8570118 -194515414 + (TG)n Simple_repeat Simple_repeat 2 74 0 238 314 58 23 chr5 8570326 8570498 -194515034 - MLT1J LTR MaLR -98 413 236 1035 156 19 0 chr5 8570545 8570705 -194514827 - U1 snRNA snRNA 0 165 3 228 297 44 0 chr5 8570766 8570857 -194514675 - MLT1J LTR MaLR -344 167 73 2508 122 8 3 chr5 8571031 8571393 -194514139 + THE1B LTR MaLR 1 364 0 611 111 11 0 chr5 8571700 8571790 -194513742 + AluSc SINE Alu 216 306 -3 211 383 47 0 chr5 8571993 8572100 -194513432 - MIR SINE MIR -20 242 131 384 219 117 16 chr5 8572196 8572324 -194513208 + MLT1K LTR MaLR 418 558 -30 2102 205 100 4 chr5 8574661 8575169 -194510363 - MER89 LTR ERV1 -2 557 1 216 364 64 12 chr5 8575197 8575370 -194510162 - MIR SINE MIR -60 202 21 11232 49 0 0 chr5 8575935 8578103 -194507429 + L1PA5 LINE L1 3983 6150 -4 2182 184 49 2 chr5 8578274 8578681 -194506851 - MSTB LTR MaLR 0 426 1 301 282 127 0 chr5 8579412 8579522 -194506010 - MER94 DNA DNA 0 134 11 454 144 0 44 chr5 8579737 8579827 -194505705 + AluS SINE Alu 223 308 -1 192 372 99 33 chr5 8580188 8580309 -194505223 - MIR3 SINE MIR -27 181 53 241 323 16 48 chr5 8580346 8580470 -194505062 - L2 LINE L2 -1 3312 3193 1531 230 53 45 chr5 8583457 8583949 -194501583 - MLT1D LTR MaLR -9 496 1 221 83 28 0 chr5 8584957 8584993 -194500539 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 8905 99 25 6 chr5 8585494 8586751 -194498781 + HSMAR1 DNA Mariner 4 1284 -3 241 233 27 0 chr5 8587418 8587491 -194498041 + L1MC4 LINE L1 6624 6698 -1344 221 276 0 0 chr5 8587502 8587560 -194497972 + (TA)n Simple_repeat Simple_repeat 2 59 0 2163 98 9 0 chr5 8589075 8589560 -194495972 + MER41A LTR ERV1 1 528 -107 295 309 11 0 chr5 8589573 8589667 -194495865 + L1ME LINE L1 3797 3891 -2255 1734 159 12 72 chr5 8590014 8590416 -194495116 + MLT1B LTR MaLR 13 390 0 346 298 116 0 chr5 8590902 8591083 -194494449 + MLT1G3 LTR MaLR 155 356 -174 422 327 186 4 chr5 8591664 8591927 -194493605 + L1ME LINE L1 5512 5822 -299 319 49 0 0 chr5 8591946 8591987 -194493545 + AluY SINE Alu 7 47 -255 2455 76 0 0 chr5 8592383 8592674 -194492858 - AluSg SINE Alu -19 291 1 321 26 0 0 chr5 8592714 8592752 -194492780 + (CA)n Simple_repeat Simple_repeat 2 39 0 243 125 0 0 chr5 8593245 8593285 -194492247 + (TC)n Simple_repeat Simple_repeat 2 41 0 276 30 0 0 chr5 8593287 8593320 -194492212 + (CA)n Simple_repeat Simple_repeat 1 33 0 632 188 8 1 chr5 8593700 8593715 -194491817 + L1P5 LINE L1 5560 5573 -583 532 196 0 0 chr5 8593715 8593817 -194491715 - L1PB4 LINE L1 0 6156 6055 632 188 8 1 chr5 8593817 8593949 -194491583 + L1P5 LINE L1 5573 5706 -450 2576 34 0 3 chr5 8594236 8594533 -194490999 + AluY SINE Alu 1 296 -15 1375 206 23 30 chr5 8597178 8597479 -194488053 - AluJb SINE Alu -13 299 1 1179 252 72 31 chr5 8598841 8599285 -194486247 - MLT1C LTR MaLR -5 462 1 5354 101 14 9 chr5 8599442 8600247 -194485285 + L1PA13 LINE L1 5347 6155 -8 667 182 35 0 chr5 8601203 8601346 -194484186 - L1 LINE L1 -900 5246 5099 859 194 66 0 chr5 8601379 8601590 -194483942 + L1M3 LINE L1 5254 5478 -856 2063 109 0 18 chr5 8601726 8602034 -194483498 - AluSg SINE Alu 0 303 1 2664 249 61 17 chr5 8602058 8603341 -194482191 - L1ME1 LINE L1 -5 6144 4808 1139 266 57 36 chr5 8603342 8604067 -194481465 - L1ME1 LINE L1 -4412 1898 1122 2243 118 3 0 chr5 8604257 8604562 -194480970 + AluSx SINE Alu 1 306 -6 323 288 75 27 chr5 8604738 8604884 -194480648 - L1ME1 LINE L1 -5917 202 50 2235 107 3 3 chr5 8605544 8605843 -194479689 + AluSq SINE Alu 1 299 -14 21 0 0 0 chr5 8608214 8608235 -194477297 + AT_rich Low_complexity Low_complexity 1 21 0 203 244 0 110 chr5 8608397 8608479 -194477053 + L2 LINE L2 3137 3209 -63 252 122 0 0 chr5 8611029 8611070 -194474462 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 2181 122 81 57 chr5 8612989 8613171 -194472361 - MSTA LTR MaLR 0 428 252 2284 68 0 4 chr5 8613171 8613452 -194472080 - AluY SINE Alu -4 307 28 2181 122 81 57 chr5 8613452 8613687 -194471845 - MSTA LTR MaLR -176 252 1 236 224 0 26 chr5 8617673 8617716 -194467816 + A-rich Low_complexity Low_complexity 5 47 -31 1245 51 0 0 chr5 8617716 8617872 -194467660 + L1PA5 LINE L1 5998 6153 -1 236 224 0 26 chr5 8617872 8617904 -194467628 + A-rich Low_complexity Low_complexity 47 78 0 1729 167 3 15 chr5 8618207 8618537 -194466995 + L1MC/D LINE L1 5426 5751 -2034 4130 141 65 23 chr5 8618650 8619436 -194466096 - LTR1B LTR ERV1 -7 819 1 21 36 0 0 chr5 8619754 8619782 -194465750 + AT_rich Low_complexity Low_complexity 1 28 0 224 344 57 8 chr5 8622303 8622425 -194463107 - MIR SINE MIR -66 196 69 385 274 76 32 chr5 8622491 8622648 -194462884 - MIR SINE MIR -13 249 86 180 0 0 0 chr5 8624930 8624950 -194460582 + (T)n Simple_repeat Simple_repeat 1 20 0 509 159 215 0 chr5 8626541 8626648 -194458884 + FLAM_A SINE Alu 1 130 -3 4396 140 12 65 chr5 8627348 8628264 -194457268 - L1MA4 LINE L1 -6 6294 5428 2697 167 55 2 chr5 8628264 8628919 -194456613 + L1MA4 LINE L1 4743 5437 -743 6063 241 66 22 chr5 8629034 8630667 -194454865 + L1ME1 LINE L1 2359 4129 -2017 2570 71 0 0 chr5 8630667 8630976 -194454556 + AluY SINE Alu 1 309 -2 6063 241 66 22 chr5 8630976 8631720 -194453812 + L1ME1 LINE L1 4129 4839 -1307 616 204 6 78 chr5 8631724 8631891 -194453641 + Tigger2a DNA MER2_type 1 155 -279 729 200 8 0 chr5 8631907 8632032 -194453500 + Tigger2a DNA MER2_type 308 433 -1 2147 233 69 32 chr5 8632050 8633325 -194452207 + L1ME1 LINE L1 4858 6332 -2 2075 164 42 11 chr5 8633340 8633718 -194451814 + MLT1B LTR MaLR 1 390 0 248 302 129 72 chr5 8634852 8635170 -194450362 + L2 LINE L2 2931 3266 -6 272 339 74 83 chr5 8635230 8635664 -194449868 - L2 LINE L2 -1 3271 2842 264 30 0 0 chr5 8635839 8635872 -194449660 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 2243 148 28 14 chr5 8637322 8637681 -194447851 + THE1B LTR MaLR 1 364 0 11591 92 14 2 chr5 8637681 8639242 -194446290 + THE1B-int LTR MaLR 1 1580 0 2358 112 27 33 chr5 8639242 8639608 -194445924 + THE1B LTR MaLR 1 364 0 180 200 0 0 chr5 8640092 8640132 -194445400 + (TAG)n Simple_repeat Simple_repeat 3 42 0 225 224 20 0 chr5 8640509 8640558 -194444974 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 23 54 0 0 chr5 8640819 8640856 -194444676 + AT_rich Low_complexity Low_complexity 1 37 0 333 235 43 17 chr5 8640962 8641077 -194444455 - MER97b DNA MER1_type? 0 1053 936 6955 194 30 9 chr5 8641249 8643378 -194442154 + L1M3f LINE L1 5 2180 -4065 823 209 0 0 chr5 8643423 8643614 -194441918 + L1M3f LINE L1 2917 3107 -3221 * 1617 206 0 8 chr5 8643612 8643985 -194441547 + L1MA4 LINE L1 5902 6271 -29 21 0 0 0 chr5 8643994 8644015 -194441517 + AT_rich Low_complexity Low_complexity 1 21 0 637 213 94 35 chr5 8645180 8645382 -194440150 - MER97a DNA MER1_type? -307 587 374 1970 228 2 4 chr5 8645382 8645848 -194439684 + L1MC3 LINE L1 5523 5987 -1798 375 250 17 17 chr5 8645845 8645965 -194439567 + L1MC3 LINE L1 6739 6858 -927 * 1550 205 92 49 chr5 8646179 8646402 -194439130 + L1MD3 LINE L1 6874 7086 -909 412 194 0 0 chr5 8646402 8646469 -194439063 + MLT1F1 LTR MaLR 45 111 -456 1550 205 92 49 chr5 8646469 8646885 -194438647 + L1MD3 LINE L1 7086 7822 -173 1543 193 84 11 chr5 8646893 8647272 -194438260 + MER50 LTR ERV1 328 734 0 536 269 105 45 chr5 8647290 8647442 -194438090 + L2 LINE L2 2762 2903 -410 3231 136 73 25 chr5 8647442 8648045 -194437487 + MER41B LTR ERV1 3 634 -1 536 269 105 45 chr5 8648045 8648330 -194437202 + L2 LINE L2 2903 3240 -73 23 0 0 0 chr5 8649228 8649251 -194436281 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr5 8649699 8649720 -194435812 + AT_rich Low_complexity Low_complexity 1 21 0 306 163 70 35 chr5 8651391 8651477 -194434055 - MIR SINE MIR -2 260 172 314 340 41 46 chr5 8651488 8651612 -194433920 + L2 LINE L2 3075 3199 -73 2005 153 95 5 chr5 8651612 8652003 -194433529 + MSTB LTR MaLR 1 426 0 314 340 41 46 chr5 8652003 8652072 -194433460 + L2 LINE L2 3199 3267 -5 278 232 254 17 chr5 8652219 8652396 -194433136 + L2 LINE L2 1934 2152 -1162 324 309 49 29 chr5 8652717 8652921 -194432611 - MER112 DNA MER1_type 0 260 53 28 0 0 0 chr5 8654910 8654938 -194430594 + AT_rich Low_complexity Low_complexity 1 28 0 683 283 107 54 chr5 8655982 8656374 -194429158 - L2 LINE L2 -1 3312 2900 183 184 0 0 chr5 8656747 8656785 -194428747 + GA-rich Low_complexity Low_complexity 1 38 0 2487 57 7 0 chr5 8658818 8659115 -194426417 - AluY SINE Alu -10 301 3 207 0 0 0 chr5 8659565 8659588 -194425944 + (A)n Simple_repeat Simple_repeat 1 23 0 24 67 0 0 chr5 8660266 8660311 -194425221 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr5 8661975 8662007 -194423525 + AT_rich Low_complexity Low_complexity 1 32 0 246 292 93 30 chr5 8662602 8662824 -194422708 + L1ME LINE L1 5563 5791 -330 254 87 0 0 chr5 8663048 8663094 -194422438 - LTR66 LTR ERVL -171 439 394 306 216 0 0 chr5 8663094 8663168 -194422364 + (CA)n Simple_repeat Simple_repeat 2 75 0 279 104 0 0 chr5 8663296 8663344 -194422188 + (TA)n Simple_repeat Simple_repeat 2 49 0 27 29 0 0 chr5 8664601 8664635 -194420897 + AT_rich Low_complexity Low_complexity 1 34 0 1042 256 109 6 chr5 8666278 8666590 -194418942 - MER2 DNA MER2_type 0 344 1 1678 153 48 30 chr5 8666689 8666984 -194418548 - AluJb SINE Alu -12 300 1 184 235 153 35 chr5 8666984 8667058 -194418474 + MIR SINE MIR 56 143 -65 303 319 30 0 chr5 8667270 8667436 -194418096 + (CACAA)n Simple_repeat Simple_repeat 4 174 0 460 248 9 0 chr5 8668163 8668268 -194417264 + MER3 DNA MER1_type 98 203 -6 1043 241 101 3 chr5 8668558 8668844 -194416688 + LTR16A LTR ERVL 137 450 0 267 311 74 10 chr5 8668844 8669165 -194416367 + HERV16 LTR ERVL 1 361 -4635 616 310 76 14 chr5 8669348 8669703 -194415829 + HERV16 LTR ERVL 579 955 -4041 712 285 96 17 chr5 8669707 8670116 -194415416 + HERV16 LTR ERVL 1619 2079 -2917 * 1096 347 86 33 chr5 8670110 8671073 -194414459 + HERV16 LTR ERVL 2186 3199 -2565 527 234 0 8 chr5 8671119 8671243 -194414289 + LTR16A LTR ERVL 275 397 -53 845 50 0 0 chr5 8671392 8671492 -194414040 - AluSg/x SINE Alu -7 305 206 945 211 83 5 chr5 8672267 8672471 -194413061 - MER58A DNA MER1_type -3 221 2 22 35 0 0 chr5 8673483 8673512 -194412020 + AT_rich Low_complexity Low_complexity 1 29 0 699 297 29 21 chr5 8674005 8674244 -194411288 - MIR SINE MIR -6 256 16 783 223 217 0 chr5 8675980 8676164 -194409368 + MER58A DNA MER1_type 1 224 0 198 0 0 0 chr5 8676267 8676289 -194409243 + (A)n Simple_repeat Simple_repeat 1 22 0 677 239 17 33 chr5 8676756 8676936 -194408596 + MER5B DNA MER1_type 1 177 -1 188 300 20 15 chr5 8677027 8677122 -194408410 - MER5A DNA MER1_type -65 113 18 213 132 26 0 chr5 8677206 8677244 -194408288 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 210 319 115 18 chr5 8680347 8680460 -194405072 + MIR SINE MIR 41 164 -98 206 305 34 0 chr5 8680929 8680988 -194404544 + L2 LINE L2 3212 3272 0 321 306 106 82 chr5 8681486 8681731 -194403801 + L1M2 LINE L1 882 1132 -5717 461 249 216 16 chr5 8682386 8682571 -194402961 + MIR SINE MIR 18 239 -23 207 0 0 0 chr5 8682654 8682677 -194402855 + (T)n Simple_repeat Simple_repeat 1 23 0 576 317 93 21 chr5 8685707 8686327 -194399205 - L1MC4a LINE L1 -725 5575 5298 30 45 0 0 chr5 8686490 8686534 -194398998 + AT_rich Low_complexity Low_complexity 1 44 0 1054 144 76 79 chr5 8686563 8686728 -194398804 - L1MA8 LINE L1 -6 6285 6140 2243 109 3 3 chr5 8686728 8687040 -194398492 + AluSq SINE Alu 2 313 0 1054 144 76 79 chr5 8687040 8687155 -194398377 - L1MA8 LINE L1 -151 6140 6026 1518 170 4 0 chr5 8687259 8687494 -194398038 - MER46A DNA MER2_type 0 236 1 497 313 55 11 chr5 8688189 8688371 -194397161 + MIR SINE MIR 16 205 -57 1007 132 111 16 chr5 8688417 8688607 -194396925 - MER3 DNA MER1_type -1 208 1 22 35 0 0 chr5 8689443 8689472 -194396060 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr5 8689546 8689595 -194395937 + AT_rich Low_complexity Low_complexity 1 49 0 962 246 89 32 chr5 8689800 8690113 -194395419 - MER93a LTR ERV1 -2 400 70 530 259 7 34 chr5 8691122 8691269 -194394263 - L2 LINE L2 -4 3309 3167 29 0 0 0 chr5 8691606 8691635 -194393897 + AT_rich Low_complexity Low_complexity 1 29 0 267 285 100 12 chr5 8692194 8692380 -194393152 + MIR SINE MIR 2 256 -6 21 36 0 0 chr5 8693656 8693684 -194391848 + AT_rich Low_complexity Low_complexity 1 28 0 183 114 0 0 chr5 8694093 8694128 -194391404 + (A)n Simple_repeat Simple_repeat 1 35 0 1201 246 111 33 chr5 8694540 8694963 -194390569 + LTR65 LTR ERV1 167 622 -47 671 207 133 0 chr5 8695228 8695363 -194390169 + FRAM SINE Alu 5 157 -9 604 258 72 70 chr5 8695412 8695928 -194389604 - L1MC5 LINE L1 -137 7824 7308 1788 86 3 111 chr5 8695944 8696123 -194389409 + MLT2A2 LTR ERVL 173 305 -148 2319 93 75 9 chr5 8696123 8696456 -194389076 + THE1A LTR MaLR 1 355 0 1788 86 3 111 chr5 8696456 8696591 -194388941 + MLT2A2 LTR ERVL 305 453 0 230 257 139 59 chr5 8697187 8697374 -194388158 + LTR16C LTR ERVL 262 463 -28 2443 120 24 24 chr5 8697422 8697796 -194387736 - THE1C LTR MaLR 0 375 2 219 356 110 34 chr5 8698723 8699015 -194386517 + L2 LINE L2 2811 3124 -189 247 293 0 13 chr5 8699026 8699101 -194386431 - L1ME3A LINE L1 -43 6127 6054 345 236 0 0 chr5 8699188 8699260 -194386272 + MER3 DNA MER1_type 43 114 -95 283 165 0 8 chr5 8699264 8699350 -194386182 + MER3 DNA MER1_type 2472 2624 0 238 263 168 0 chr5 8699395 8699490 -194386042 + L2 LINE L2 3180 3290 -23 331 272 218 63 chr5 8700012 8700563 -194384969 - L1M2 LINE L1 -5563 1286 446 1576 232 13 33 chr5 8701684 8701884 -194383648 + MLT1B LTR MaLR 1 191 -199 2638 116 16 8 chr5 8701884 8702256 -194383276 - THE1C LTR MaLR 0 375 1 1576 232 13 33 chr5 8702256 8702452 -194383080 + MLT1B LTR MaLR 191 389 -1 941 221 77 10 chr5 8703227 8703435 -194382097 + MER58A DNA MER1_type 3 224 0 1489 163 16 16 chr5 8703864 8704116 -194381416 + AluSx SINE Alu 36 287 -25 2150 164 3 6 chr5 8704203 8704556 -194380976 + MLT1A1 LTR MaLR 1 352 -13 263 301 206 19 chr5 8704612 8704821 -194380711 + MIR SINE MIR 15 262 0 2114 143 40 27 chr5 8705571 8705941 -194379591 + THE1C LTR MaLR 1 375 0 513 299 64 5 chr5 8706253 8706457 -194379075 + L2 LINE L2 3098 3313 0 766 247 86 0 chr5 8707938 8708112 -194377420 - MER63A DNA MER1_type -4 206 18 509 271 129 78 chr5 8708143 8708516 -194377016 - MLT1J2 LTR MaLR -58 392 1 1834 183 113 26 chr5 8708770 8708882 -194376650 - MLT1C LTR MaLR -7 460 359 6237 90 66 0 chr5 8708882 8709912 -194375620 - L1PA11 LINE L1 -1 6173 5112 1834 183 113 26 chr5 8709912 8710215 -194375317 - MLT1C LTR MaLR -108 359 9 2359 118 30 28 chr5 8711586 8711949 -194373583 + THE1B LTR MaLR 1 364 0 304 258 132 60 chr5 8712618 8712785 -194372747 - L1M4 LINE L1 -1087 5059 4881 196 370 47 24 chr5 8713121 8713248 -194372284 + L2 LINE L2 3133 3262 -10 196 151 19 19 chr5 8713749 8713802 -194371730 + (TA)n Simple_repeat Simple_repeat 1 53 0 1995 222 80 34 chr5 8713897 8714513 -194371019 + LTR48B LTR ERV1 1 644 0 2064 174 11 6 chr5 8714675 8715038 -194370494 + MLT1A1 LTR MaLR 1 365 0 1013 153 0 6 chr5 8715551 8715708 -194369824 + Tigger1 DNA MER2_type 2 157 -2261 * 1242 153 38 0 chr5 8715697 8715906 -194369626 + Tigger1 DNA MER2_type 2202 2418 0 6883 118 46 55 chr5 8715944 8717186 -194368346 - Tigger3b DNA MER2_type 0 1231 1 336 322 0 0 chr5 8717186 8717273 -194368259 + L1MC4 LINE L1 6617 6703 -1339 393 212 11 43 chr5 8717332 8717516 -194368016 + (TATG)n Simple_repeat Simple_repeat 1 178 0 341 314 20 0 chr5 8717518 8717620 -194367912 + (TATATG)n Simple_repeat Simple_repeat 5 108 0 2148 83 52 3 chr5 8718090 8718380 -194367152 + AluSx SINE Alu 1 304 -8 229 371 8 8 chr5 8719703 8719827 -194365705 + MIR SINE MIR 20 143 -119 1857 147 13 7 chr5 8720772 8721078 -194364454 - AluJo SINE Alu -4 308 1 205 283 22 76 chr5 8721491 8721583 -194363949 + MIR SINE MIR 60 146 -116 679 189 16 74 chr5 8721593 8721783 -194363749 - MER5A DNA MER1_type -7 182 4 336 319 17 9 chr5 8722466 8722582 -194362950 - MIR SINE MIR -124 138 22 304 221 85 79 chr5 8724201 8724384 -194361148 + L1ME LINE L1 5550 5745 -419 261 163 0 0 chr5 8728127 8728176 -194357356 + (CA)n Simple_repeat Simple_repeat 1 49 0 228 330 34 0 chr5 8729248 8729336 -194356196 + L2 LINE L2 3181 3271 -42 1943 145 0 3 chr5 8730363 8730667 -194354865 - AluJb SINE Alu -9 303 1 3425 92 11 0 chr5 8731560 8732008 -194353524 + MLT2A2 LTR ERVL 1 453 0 542 125 125 0 chr5 8732214 8732302 -194353230 + AluSq/x SINE Alu 34 132 -180 1444 124 0 0 chr5 8732324 8732533 -194352999 + AluSg/x SINE Alu 102 310 0 1955 139 13 3 chr5 8733024 8733333 -194352199 - AluJb SINE Alu 0 312 1 442 193 9 55 chr5 8733476 8733585 -194351947 + MER104 DNA Tc2 1 104 -76 316 280 99 49 chr5 8734433 8734676 -194350856 + LTR33 LTR ERVL 106 360 -161 2265 157 13 18 chr5 8734680 8735068 -194350464 + MLT1B LTR MaLR 3 388 -2 449 331 43 0 chr5 8735550 8735689 -194349843 + L2 LINE L2 3122 3266 -6 857 198 8 88 chr5 8736334 8736572 -194348960 - MER20 DNA MER1_type 0 219 1 249 333 0 0 chr5 8737576 8737639 -194347893 - L2 LINE L2 -5 3267 3205 597 246 18 53 chr5 8737793 8737950 -194347582 + MIR SINE MIR 1 151 -111 1965 123 0 7 chr5 8737950 8738252 -194347280 - AluSx SINE Alu -12 300 1 597 246 18 53 chr5 8738252 8738314 -194347218 + MIR SINE MIR 151 214 -48 30 69 0 0 chr5 8739270 8739328 -194346204 + AT_rich Low_complexity Low_complexity 1 58 0 2326 73 3 0 chr5 8739357 8739657 -194345875 - AluY SINE Alu -10 301 1 278 292 42 0 chr5 8740069 8740165 -194345367 - Charlie8 DNA MER1_type -2134 283 184 297 366 6 0 chr5 8740259 8740431 -194345101 + (CCAA)n Simple_repeat Simple_repeat 2 174 0 242 322 132 0 chr5 8741766 8741887 -194343645 - MIR SINE MIR -14 248 112 501 274 9 50 chr5 8742207 8742387 -194343145 + MIR SINE MIR 5 182 -51 238 293 102 32 chr5 8742822 8742979 -194342553 - MER5A DNA MER1_type -14 175 8 905 189 13 44 chr5 8743898 8744067 -194341465 - MER96B DNA MER1_type? -8 409 247 1237 231 12 82 chr5 8744067 8744469 -194341063 + MLT1A2 LTR MaLR 1 374 0 905 189 13 44 chr5 8744469 8744526 -194341006 - MER96B DNA MER1_type? -170 247 190 180 0 0 0 chr5 8745400 8745420 -194340112 + (TC)n Simple_repeat Simple_repeat 1 20 0 1686 154 3 20 chr5 8745552 8745844 -194339688 - AluJb SINE Alu -25 287 1 312 27 0 0 chr5 8746803 8746840 -194338692 + (TC)n Simple_repeat Simple_repeat 1 37 0 239 224 60 15 chr5 8746887 8746954 -194338578 + L1MC4 LINE L1 6634 6703 -1339 21 0 0 0 chr5 8746954 8746975 -194338557 + AT_rich Low_complexity Low_complexity 1 21 0 1541 192 0 3 chr5 8746975 8747261 -194338271 - AluJo SINE Alu -27 285 1 2159 105 0 0 chr5 8750202 8750496 -194335036 - AluSg SINE Alu -16 294 1 653 236 61 30 chr5 8750591 8750793 -194334739 - MIR SINE MIR 0 262 50 298 366 6 19 chr5 8751028 8751189 -194334343 + MER5B DNA MER1_type 18 176 -2 2276 61 40 0 chr5 8752011 8752307 -194333225 + AluY SINE Alu 1 308 -3 391 262 58 0 chr5 8753310 8753413 -194332119 - L2 LINE L2 -27 3245 3137 1055 186 29 5 chr5 8754834 8755185 -194330347 + Tigger1 DNA MER2_type 2 2413 -5 208 271 0 0 chr5 8755632 8755680 -194329852 - MIR SINE MIR -21 241 194 1850 142 0 13 chr5 8757429 8757731 -194327801 - AluSg SINE Alu -12 298 1 366 144 0 4 chr5 8757680 8757748 -194327784 - Alu SINE Alu -250 51 2 245 382 45 6 chr5 8758030 8758187 -194327345 - MIR SINE MIR -80 182 20 2252 86 7 23 chr5 8758487 8758791 -194326741 - AluSq SINE Alu -14 299 1 952 201 106 82 chr5 8759632 8760266 -194325266 + MER4C LTR ERV1 10 465 0 2152 128 0 13 chr5 8762401 8762714 -194322818 + AluSx SINE Alu 1 309 -3 376 118 40 0 chr5 8763169 8763245 -194322287 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 498 265 53 52 chr5 8763366 8763624 -194321908 + MLT1D LTR MaLR 5 254 -213 294 323 150 18 chr5 8767397 8767623 -194317909 + MIR SINE MIR 7 262 0 1825 240 33 7 chr5 8769153 8769603 -194315929 - MLT1C LTR MaLR 0 467 6 290 87 22 0 chr5 8769658 8769704 -194315828 + (TC)n Simple_repeat Simple_repeat 1 47 0 289 169 68 0 chr5 8773406 8773465 -194312067 - L2 LINE L2 -1 3312 3250 1995 199 56 79 chr5 8773700 8774267 -194311265 - MLT2B3 LTR ERVL 0 554 1 207 0 0 0 chr5 8774598 8774621 -194310911 + (T)n Simple_repeat Simple_repeat 1 23 0 1440 86 16 67 chr5 8775038 8775126 -194310406 + L1MA1 LINE L1 6054 6145 -157 2133 127 0 0 chr5 8775126 8775417 -194310115 + AluSx SINE Alu 3 293 -19 1440 86 16 67 chr5 8775417 8775434 -194310098 + L1MA1 LINE L1 6145 6161 -141 1919 159 10 3 chr5 8775434 8775558 -194309974 + AluSx SINE Alu 1 123 -189 276 100 0 0 chr5 8775558 8775598 -194309934 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 321 26 0 0 chr5 8775601 8775639 -194309893 + (CA)n Simple_repeat Simple_repeat 1 38 0 1919 159 10 3 chr5 8775639 8775811 -194309721 + AluSx SINE Alu 124 303 -9 1440 86 16 67 chr5 8775811 8775959 -194309573 + L1MA1 LINE L1 6161 6295 -7 23 0 0 0 chr5 8776769 8776792 -194308740 + AT_rich Low_complexity Low_complexity 1 23 0 1079 201 5 33 chr5 8777225 8777439 -194308093 + MER20 DNA MER1_type 6 213 -6 234 280 30 40 chr5 8778632 8778732 -194306800 + MIR SINE MIR 72 170 -92 595 167 118 73 chr5 8779809 8780013 -194305519 + MER5C DNA MER1_type 111 323 -1 333 301 10 10 chr5 8781029 8781132 -194304400 + MIR SINE MIR 110 212 -50 270 270 119 46 chr5 8781196 8781744 -194303788 - L1ME4a LINE L1 -4 6117 5530 2364 96 0 3 chr5 8782764 8783066 -194302466 - AluY SINE Alu -10 301 1 231 152 0 0 chr5 8784837 8784883 -194300649 + CT-rich Low_complexity Low_complexity 1 46 0 181 354 104 11 chr5 8785862 8786122 -194299410 - L3b LINE CR1 -197 1386 1103 1445 217 15 6 chr5 8787087 8787414 -194298118 + L1MB3 LINE L1 5853 6182 -1 2424 45 10 3 chr5 8787423 8787715 -194297817 + AluY SINE Alu 1 294 -17 300 70 0 0 chr5 8787723 8787766 -194297766 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2306 111 141 5 chr5 8838784 8839161 -194246371 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr5 8840390 8840412 -194245120 + AT_rich Low_complexity Low_complexity 1 22 0 225 154 0 0 chr5 8841476 8841515 -194244017 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 2311 114 0 3 chr5 8842328 8842636 -194242896 + AluSx SINE Alu 1 307 -5 275 254 30 0 chr5 8843413 8843480 -194242052 + LTR16C LTR ERVL 414 482 -9 587 294 95 5 chr5 8847236 8847447 -194238085 + MLT1I LTR MaLR 99 328 -81 458 337 15 10 chr5 8848697 8848902 -194236630 - MIR SINE MIR -6 256 51 668 207 8 139 chr5 8850512 8850763 -194234769 - MER20 DNA MER1_type 0 219 2 401 246 215 26 chr5 8850903 8851098 -194234434 - MLT1J LTR MaLR -279 232 1 239 333 139 19 chr5 8851140 8851608 -194233924 + L2 LINE L2 2364 2887 -427 226 255 53 75 chr5 8851854 8851948 -194233584 + L2 LINE L2 3177 3268 -4 238 302 191 0 chr5 8852046 8852172 -194233360 + MIR3 SINE MIR 36 185 -23 202 143 41 0 chr5 8852321 8852370 -194233162 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 643 251 86 67 chr5 8853056 8853487 -194232045 - MLT1H LTR MaLR -4 545 107 2336 96 0 3 chr5 8853583 8853897 -194231635 - AluSq SINE Alu 0 313 1 2567 61 0 10 chr5 8855698 8856010 -194229522 - AluY SINE Alu -2 309 1 370 289 16 0 chr5 8857248 8857376 -194228156 + MER20 DNA MER1_type 86 215 -4 183 42 0 0 chr5 8857425 8857449 -194228083 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1566 164 3 66 chr5 8857449 8857599 -194227933 - AluJb SINE Alu -32 280 157 297 0 0 0 chr5 8857599 8857632 -194227900 + (TA)n Simple_repeat Simple_repeat 1 33 0 1566 164 3 66 chr5 8857632 8857780 -194227752 - AluJb SINE Alu -155 157 1 910 220 33 19 chr5 8857998 8858212 -194227320 - MER58B DNA MER1_type 0 341 125 992 151 0 41 chr5 8858229 8858401 -194227131 + AluJb SINE Alu 129 293 -19 547 213 0 0 chr5 8858402 8858496 -194227036 - MER58B DNA MER1_type -245 96 3 301 252 42 84 chr5 8858888 8859031 -194226501 + MIR3 SINE MIR 21 157 -51 2180 135 37 6 chr5 8859984 8860311 -194225221 + MER1B DNA MER1_type 2 338 -1 500 219 144 31 chr5 8861223 8861383 -194224149 + MER112 DNA MER1_type 81 258 -2 1909 125 133 77 chr5 8862395 8862787 -194222745 - MLT2D LTR ERVL 0 414 1 201 330 70 26 chr5 8864194 8864309 -194221223 + MIR SINE MIR 14 133 -129 2237 64 0 0 chr5 8864333 8864599 -194220933 + AluY SINE Alu 1 266 -45 2639 58 0 0 chr5 8864763 8865072 -194220460 + AluY SINE Alu 1 309 -2 5638 68 36 21 chr5 8865678 8866433 -194219099 - MER4E LTR ERV1 0 766 1 487 247 0 0 chr5 8868810 8868903 -194216629 + MLT1D LTR MaLR 2 94 -411 * 1046 249 179 18 chr5 8868902 8869399 -194216133 + Charlie7 DNA MER1_type 1738 2314 -298 444 219 17 0 chr5 8869400 8869519 -194216013 - L1M4c LINE L1 -3968 2416 2296 283 208 179 1 chr5 8869534 8869766 -194215766 + Charlie7 DNA MER1_type 2320 2604 -8 2379 168 49 35 chr5 8870016 8870468 -194215064 + MLT2C2 LTR ERVL 1 458 -6 549 99 0 0 chr5 8870600 8870681 -194214851 + (TTCC)n Simple_repeat Simple_repeat 3 83 0 1374 229 4 0 chr5 8870684 8870955 -194214577 - L1PA16 LINE L1 0 6166 5895 1446 217 113 29 chr5 8871844 8872226 -194213306 + MLT2D LTR ERVL 1 414 0 877 141 82 0 chr5 8872309 8872444 -194213088 + AluSg/x SINE Alu 140 285 -27 315 0 0 0 chr5 8872461 8872496 -194213036 + (CA)n Simple_repeat Simple_repeat 2 36 0 1865 137 70 23 chr5 8873681 8874024 -194211508 - MER46B DNA MER2_type 0 236 3 2325 109 3 0 chr5 8874542 8874854 -194210678 + AluSq SINE Alu 1 313 0 1920 199 119 19 chr5 8875160 8875632 -194209900 + MLT2B1 LTR ERVL 2 520 0 537 272 380 19 chr5 8876314 8877001 -194208531 + L2 LINE L2 1460 2394 -920 1639 68 5 14 chr5 8877276 8877483 -194208049 - AluY SINE Alu -17 294 90 201 255 0 20 chr5 8877922 8877973 -194207559 + CT-rich Low_complexity Low_complexity 3 52 0 2004 126 0 4 chr5 8878794 8879072 -194206460 + AluSc SINE Alu 1 277 -32 246 62 0 0 chr5 8879072 8879104 -194206428 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2634 79 18 147 chr5 8879144 8879653 -194205879 + MLT2A1 LTR ERVL 2 444 0 1241 272 139 18 chr5 8880601 8880639 -194204893 - L2 LINE L2 -456 2858 2826 291 71 0 0 chr5 8880639 8880681 -194204851 + (TG)n Simple_repeat Simple_repeat 1 42 0 1241 272 139 18 chr5 8880681 8881323 -194204209 - L2 LINE L2 -488 2826 2095 271 318 12 0 chr5 8882815 8882900 -194202632 - MIR3 SINE MIR -11 197 112 301 231 15 0 chr5 8883590 8883655 -194201877 - MIR SINE MIR -93 169 104 185 164 0 18 chr5 8884528 8884583 -194200949 + (TA)n Simple_repeat Simple_repeat 1 54 0 444 334 50 21 chr5 8884774 8885112 -194200420 - HAL1 LINE L1 -752 1755 1408 424 306 32 19 chr5 8885726 8885883 -194199649 - MIR SINE MIR -87 175 17 25 65 0 0 chr5 8886848 8886894 -194198638 + AT_rich Low_complexity Low_complexity 1 46 0 24 32 0 0 chr5 8886949 8886980 -194198552 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr5 8887890 8887912 -194197620 + AT_rich Low_complexity Low_complexity 1 22 0 2464 126 36 0 chr5 8887924 8888313 -194197219 - L1PA15-16 LINE L1 -4100 2749 2347 5490 133 16 10 chr5 8888313 8889351 -194196181 + L1PA16 LINE L1 5053 6096 -70 2343 125 46 8 chr5 8891781 8892132 -194193400 - THE1B LTR MaLR 0 364 1 27 49 0 0 chr5 8893160 8893201 -194192331 + AT_rich Low_complexity Low_complexity 1 41 0 1796 106 152 8 chr5 8893481 8893745 -194191787 - AluSx SINE Alu 0 302 1 1710 312 114 23 chr5 8893964 8894263 -194191269 + L2 LINE L2 1742 2012 -1301 4584 190 76 8 chr5 8894263 8895105 -194190427 - MER54A LTR ERVL 0 901 3 1710 312 114 23 chr5 8895105 8896215 -194189317 + L2 LINE L2 2012 3283 -30 2454 71 0 16 chr5 8897477 8897785 -194187747 - AluSx SINE Alu -9 303 1 214 234 168 28 chr5 8899479 8899586 -194185946 + MIR SINE MIR 71 192 -70 1163 215 12 32 chr5 8899593 8899839 -194185693 + MLT1D LTR MaLR 2 242 -263 * 1327 220 19 38 chr5 8899829 8899842 -194185690 + MLT1D LTR MaLR 194 206 -299 1643 159 17 30 chr5 8899842 8900144 -194185388 + AluSx SINE Alu 1 298 -14 1327 220 19 38 chr5 8900144 8900448 -194185084 + MLT1D LTR MaLR 206 505 0 397 213 12 0 chr5 8903067 8903147 -194182385 + L2 LINE L2 3232 3312 -1 2535 137 40 28 chr5 8904050 8904474 -194181058 + MSTB1 LTR MaLR 4 432 0 511 255 156 45 chr5 8904949 8905192 -194180340 + MLT1H LTR MaLR 39 308 -241 406 289 104 66 chr5 8905376 8905829 -194179703 - L1ME4a LINE L1 -1 6120 5651 351 264 82 0 chr5 8905833 8905943 -194179589 - L1ME4a LINE L1 -490 5631 5513 194 291 89 25 chr5 8906839 8906918 -194178614 - MIR3 SINE MIR -15 193 110 202 208 30 79 chr5 8907033 8907134 -194178398 + (TG)n Simple_repeat Simple_repeat 1 96 0 22 0 0 0 chr5 8908645 8908667 -194176865 + AT_rich Low_complexity Low_complexity 1 22 0 183 250 36 18 chr5 8909325 8909381 -194176151 - MIR SINE MIR -110 152 96 280 300 47 33 chr5 8909678 8909828 -194175704 + L3 LINE CR1 1124 1275 -302 839 174 47 0 chr5 8913460 8913603 -194171929 - MLT1B LTR MaLR -23 367 218 870 207 59 104 chr5 8913603 8913972 -194171560 - MLT1A1 LTR MaLR 0 428 10 * 1171 127 31 75 chr5 8913971 8914199 -194171333 - MLT1B LTR MaLR -172 218 1 1750 222 79 35 chr5 8914766 8915274 -194170258 - MER119 DNA MER1_type 0 583 54 28 48 0 0 chr5 8915332 8915374 -194170158 + AT_rich Low_complexity Low_complexity 1 42 0 874 266 89 29 chr5 8915585 8915671 -194169861 - LTR33 LTR ERVL -103 418 339 2429 107 133 13 chr5 8915671 8916053 -194169479 + MSTA LTR MaLR 1 428 0 874 266 89 29 chr5 8916053 8916346 -194169186 - LTR33 LTR ERVL -182 339 16 443 291 53 89 chr5 8917016 8917346 -194168186 + MER21B LTR ERV1 6 326 -279 294 221 57 150 chr5 8917372 8917512 -194168020 + MER21B LTR ERV1 550 676 -187 1105 32 0 0 chr5 8917761 8917887 -194167645 - L1PA5 LINE L1 -1 6153 6028 2287 59 0 53 chr5 8917892 8918196 -194167336 - AluY SINE Alu -23 288 1 449 211 106 33 chr5 8918393 8918573 -194166959 + LTR16A1 LTR ERVL 265 457 0 380 291 162 50 chr5 8920228 8920813 -194164719 + L2 LINE L2 1628 2278 -1036 347 240 24 72 chr5 8921478 8921603 -194163929 - L2 LINE L2 0 3313 3195 659 209 214 15 chr5 8922126 8922322 -194163210 + MER106A DNA MER1_type 2 236 0 1956 145 21 0 chr5 8922342 8922631 -194162901 - AluSx SINE Alu -17 295 1 605 213 25 0 chr5 8924678 8924800 -194160732 - L1ME3A LINE L1 -8 6162 6038 * 13093 17 0 13 chr5 8924799 8927139 -194158393 + L1HS LINE L1 3833 6155 0 246 62 0 0 chr5 8927140 8927172 -194158360 + (A)n Simple_repeat Simple_repeat 1 32 0 318 275 85 17 chr5 8927875 8928116 -194157416 + MLT1L LTR MaLR 248 597 0 1251 235 101 38 chr5 8928688 8929131 -194156401 + MLT1C LTR MaLR 1 466 -1 186 338 127 53 chr5 8930996 8931688 -194153844 + L2 LINE L2 1861 2603 -711 556 258 137 61 chr5 8931946 8932275 -194153257 - MLT1I LTR MaLR -4 405 52 317 351 45 8 chr5 8932406 8932540 -194152992 - MER5A DNA MER1_type -48 141 3 265 211 28 0 chr5 8932877 8932948 -194152584 - L1MA7 LINE L1 -6 6285 6213 1840 153 0 33 chr5 8933153 8933460 -194152072 - AluJb SINE Alu -15 297 1 214 255 20 0 chr5 8934170 8934221 -194151311 + (CAA)n Simple_repeat Simple_repeat 2 53 0 277 224 0 0 chr5 8934237 8934295 -194151237 - MIR SINE MIR -21 241 184 21 57 0 0 chr5 8934867 8934902 -194150630 + AT_rich Low_complexity Low_complexity 1 35 0 1914 178 15 15 chr5 8934974 8935316 -194150216 - MER2 DNA MER2_type -1 343 2 258 240 53 13 chr5 8936264 8936339 -194149193 - L2 LINE L2 -77 3236 3159 684 309 85 32 chr5 8936571 8936946 -194148586 + L2 LINE L2 2447 2841 -473 295 277 70 78 chr5 8937056 8937298 -194148234 + L2 LINE L2 3070 3309 -4 279 274 68 35 chr5 8938954 8939162 -194146370 + L1ME3A LINE L1 5256 5450 -734 241 132 19 19 chr5 8941370 8941423 -194144109 + CT-rich Low_complexity Low_complexity 4 56 0 202 200 25 50 chr5 8941610 8941690 -194143842 + CT-rich Low_complexity Low_complexity 2 79 0 1683 173 62 7 chr5 8942173 8942480 -194143052 + MER58B DNA MER1_type 1 324 -17 1368 113 26 0 chr5 9043038 9043232 -194042300 + THE1B LTR MaLR 133 331 -33 327 191 0 0 chr5 9044164 9044232 -194041300 + (CA)n Simple_repeat Simple_repeat 2 69 0 980 106 0 14 chr5 9044788 9044930 -194040602 - AluSg/x SINE Alu -17 295 156 22 56 0 0 chr5 9045261 9045297 -194040235 + AT_rich Low_complexity Low_complexity 1 36 0 274 361 57 15 chr5 9047731 9047994 -194037538 + L2 LINE L2 2623 2896 -418 340 347 15 10 chr5 9050010 9050209 -194035323 + MIR SINE MIR 63 262 0 2621 65 0 0 chr5 9051771 9052079 -194033453 - AluY SINE Alu -3 308 1 902 260 13 0 chr5 9052084 9052311 -194033221 + L1ME3A LINE L1 5522 5751 -419 810 116 7 87 chr5 9052411 9052549 -194032983 - AluSc SINE Alu -161 148 22 372 310 9 0 chr5 9052646 9052762 -194032770 + L1ME3A LINE L1 6049 6165 -5 642 60 0 0 chr5 9052922 9053005 -194032527 + (TA)n Simple_repeat Simple_repeat 1 83 0 232 244 89 0 chr5 9053174 9053264 -194032268 + L1M4c LINE L1 2382 2479 -3905 667 178 6 57 chr5 9053294 9053451 -194032081 - L1MC3 LINE L1 -875 6910 6762 2627 208 15 4 chr5 9053486 9054021 -194031511 + L1MC3 LINE L1 6994 7534 -251 365 298 67 6 chr5 9054023 9054201 -194031331 + L1MC4a LINE L1 6591 6779 -1029 24 53 0 0 chr5 9054388 9054426 -194031106 + AT_rich Low_complexity Low_complexity 1 38 0 293 308 47 0 chr5 9056334 9056441 -194029091 + L2 LINE L2 3201 3312 -1 219 316 60 8 chr5 9056806 9056932 -194028600 + MIR SINE MIR 11 143 -66 21 0 0 0 chr5 9057560 9057581 -194027951 + AT_rich Low_complexity Low_complexity 1 21 0 443 154 22 0 chr5 9057896 9057987 -194027545 - AluJb SINE Alu 0 312 220 * 720 208 0 0 chr5 9057981 9058101 -194027431 - AluJb SINE Alu -191 121 2 24 0 0 0 chr5 9058115 9058139 -194027393 + AT_rich Low_complexity Low_complexity 1 24 0 1906 149 0 36 chr5 9058169 9058477 -194027055 - AluJb SINE Alu -15 297 1 23 33 0 0 chr5 9059241 9059271 -194026261 + AT_rich Low_complexity Low_complexity 1 30 0 2068 44 52 0 chr5 9060083 9060333 -194025199 - AluY SINE Alu -1 310 48 1538 22 0 16 chr5 9060530 9060715 -194024817 + AluYa5 SINE Alu 120 301 -10 226 237 10 82 chr5 9061084 9061181 -194024351 + MIR SINE MIR 52 141 -121 234 114 45 0 chr5 9061561 9061605 -194023927 - MLT1J2 LTR MaLR -34 416 371 345 318 7 39 chr5 9061795 9061949 -194023583 - MLT1H LTR MaLR -307 242 94 386 256 22 0 chr5 9063733 9063823 -194021709 - MER5A DNA MER1_type -85 104 13 258 336 99 15 chr5 9064364 9064495 -194021037 - L2 LINE L2 -1 3312 3171 28 29 0 0 chr5 9064502 9064537 -194020995 + AT_rich Low_complexity Low_complexity 1 35 0 297 0 0 0 chr5 9064658 9064691 -194020841 + (CA)n Simple_repeat Simple_repeat 2 34 0 321 68 0 0 chr5 9064691 9064735 -194020797 + (GA)n Simple_repeat Simple_repeat 1 44 0 1439 175 61 61 chr5 9066116 9066510 -194019022 + MLT1C LTR MaLR 1 394 -73 309 261 169 72 chr5 9067195 9067444 -194018088 - L2 LINE L2 -11 3302 3030 328 238 61 62 chr5 9067610 9067800 -194017732 + L1MC4a LINE L1 5748 5939 -182 259 320 10 10 chr5 9068076 9068173 -194017359 - MLT1I LTR MaLR -309 100 4 187 336 133 8 chr5 9070317 9070445 -194015087 + L2 LINE L2 3126 3269 -3 2264 200 90 24 chr5 9071137 9071712 -194013820 - L1MB5 LINE L1 -8 6166 5554 21 36 0 0 chr5 9072785 9072813 -194012719 + AT_rich Low_complexity Low_complexity 1 28 0 655 186 9 0 chr5 9073622 9073853 -194011679 - L1MA9 LINE L1 -22 6290 5962 2331 53 0 86 chr5 9074094 9074432 -194011100 + AluY SINE Alu 1 309 -2 1699 271 52 18 chr5 9075706 9076392 -194009140 - L1MC4 LINE L1 -1 8041 7252 1046 225 166 103 chr5 9076393 9076473 -194009059 - L1MC4 LINE L1 -957 7085 7011 2000 124 3 17 chr5 9076473 9076786 -194008746 - AluSx SINE Alu 0 309 1 1046 225 166 103 chr5 9076786 9077135 -194008397 - L1MC4 LINE L1 -1031 7011 6606 192 40 0 0 chr5 9077135 9077160 -194008372 + (TG)n Simple_repeat Simple_repeat 2 26 0 1046 225 166 103 chr5 9077160 9077318 -194008214 - L1MC4 LINE L1 -1436 6606 6459 214 241 0 35 chr5 9077763 9077792 -194007740 + GA-rich Low_complexity Low_complexity 2 30 -27 1680 164 43 0 chr5 9077792 9078097 -194007435 + L1MA4 LINE L1 5983 6300 0 214 241 0 35 chr5 9078097 9078125 -194007407 + GA-rich Low_complexity Low_complexity 30 57 0 200 276 69 52 chr5 9078493 9078551 -194006981 + L2 LINE L2 3148 3206 -66 232 328 47 16 chr5 9080664 9080792 -194004740 + MIR SINE MIR 129 260 -2 967 282 103 3 chr5 9081145 9081532 -194004000 + LTR16A LTR ERVL 25 450 0 230 264 99 33 chr5 9081532 9081623 -194003909 + MIR SINE MIR 81 177 -85 638 199 0 73 chr5 9081896 9082032 -194003500 - FRAM SINE Alu -43 133 8 389 280 143 32 chr5 9082255 9082444 -194003088 + L2 LINE L2 2882 3091 -181 1172 231 46 53 chr5 9082911 9083322 -194002210 - MLT1C LTR MaLR -1 466 59 189 0 0 0 chr5 9084193 9084214 -194001318 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 251 238 50 38 chr5 9084422 9084502 -194001030 - MIR SINE MIR 0 262 182 644 143 6 34 chr5 9084513 9084688 -194000844 + (TA)n Simple_repeat Simple_repeat 1 170 0 560 309 133 17 chr5 9084802 9085345 -194000187 - L1M4 LINE L1 -2752 3394 2789 1969 114 0 7 chr5 9086592 9086865 -193998667 - AluSq SINE Alu -8 305 35 182 391 0 17 chr5 9087246 9087361 -193998171 + L3b LINE CR1 1119 1231 -352 678 332 26 142 chr5 9088261 9088487 -193997045 + L1PA7 LINE L1 5867 6066 -88 184 186 0 23 chr5 9089656 9089699 -193995833 + L2 LINE L2 3186 3227 -86 486 319 86 9 chr5 9089814 9090046 -193995486 + MIR SINE MIR 10 259 -3 2377 113 3 0 chr5 9090438 9090749 -193994783 - AluSx SINE Alu 0 312 1 21 0 0 0 chr5 9090939 9090960 -193994572 + AT_rich Low_complexity Low_complexity 1 21 0 567 272 62 5 chr5 9091242 9091437 -193994095 - MER58A DNA MER1_type 0 224 19 2036 75 30 0 chr5 9091618 9091885 -193993647 + L1PA12 LINE L1 5845 6119 -49 203 396 43 40 chr5 9093017 9093391 -193992141 + L3 LINE CR1 403 777 -800 302 280 167 18 chr5 9093585 9093753 -193991779 - MIR SINE MIR -42 220 28 294 239 14 0 chr5 9094034 9094105 -193991427 + MIR3 SINE MIR 128 199 -9 1084 184 34 5 chr5 9094250 9094457 -193991075 - MLT2C1 LTR ERVL -184 213 1 740 239 54 47 chr5 9094458 9094758 -193990774 - ERVL LTR ERVL -2 5755 5380 26 74 0 0 chr5 9094894 9094948 -193990584 + AT_rich Low_complexity Low_complexity 1 54 0 312 73 455 0 chr5 9095165 9095220 -193990312 - MADE1 DNA Mariner 0 80 1 2416 71 0 16 chr5 9095311 9095619 -193989913 + AluY SINE Alu 1 303 -8 1079 231 30 24 chr5 9095807 9096256 -193989276 - MLT1D LTR MaLR -1 504 4 237 116 47 23 chr5 9096257 9096300 -193989232 - MLT1D LTR MaLR -453 52 9 376 290 75 37 chr5 9096597 9096811 -193988721 - MLT1E LTR MaLR -367 226 5 363 318 99 10 chr5 9097907 9098099 -193987433 - MIR SINE MIR -9 253 45 284 315 56 49 chr5 9098415 9098577 -193986955 + L2 LINE L2 2985 3147 -125 229 262 29 10 chr5 9099877 9099980 -193985552 + (TA)n Simple_repeat Simple_repeat 2 106 0 570 256 73 55 chr5 9100721 9101010 -193984522 - MLT1I LTR MaLR -2 407 114 184 318 78 61 chr5 9102439 9102684 -193982848 + L2 LINE L2 2864 3112 -160 228 135 0 0 chr5 9102684 9102721 -193982811 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 284 351 38 0 chr5 9102971 9103102 -193982430 - MIR SINE MIR -71 191 56 299 317 10 0 chr5 9104840 9104944 -193980588 + L1ME2 LINE L1 6038 6142 -22 243 158 0 0 chr5 9106904 9106942 -193978590 - L2 LINE L2 0 3272 3235 273 29 0 0 chr5 9107502 9107536 -193977996 + (CA)n Simple_repeat Simple_repeat 1 34 0 286 204 0 0 chr5 9107599 9107610 -193977922 + MER3 DNA MER1_type 37 47 -162 384 244 57 16 chr5 9107610 9107733 -193977799 - MER3 DNA MER1_type 0 209 82 254 281 21 21 chr5 9107754 9107850 -193977682 - L1MC/D LINE L1 -2031 5777 5682 2039 142 31 0 chr5 9108576 9108900 -193976632 - THE1B LTR MaLR -30 334 1 215 353 147 0 chr5 9109399 9109515 -193976017 - L2 LINE L2 -26 3246 3114 21 36 0 0 chr5 9110977 9111005 -193974527 + AT_rich Low_complexity Low_complexity 1 28 0 260 314 20 20 chr5 9111281 9111434 -193974098 - L1MC/D LINE L1 -443 5678 5526 288 250 0 54 chr5 9111810 9111902 -193973630 - L2 LINE L2 -1361 1953 1867 740 294 167 27 chr5 9111976 9112414 -193973118 - L2 LINE L2 -1462 1852 1354 4481 132 28 74 chr5 9113647 9114482 -193971050 - L1MA4 LINE L1 -8 6292 5497 1282 144 22 51 chr5 9114477 9114831 -193970701 + L1M1 LINE L1 5108 5458 -743 3352 152 39 33 chr5 9114987 9115160 -193970372 + L1MA2 LINE L1 4993 5163 -1142 216 0 0 0 chr5 9115160 9115184 -193970348 + (CA)n Simple_repeat Simple_repeat 1 24 0 3352 152 39 33 chr5 9115184 9115394 -193970138 + L1MA2 LINE L1 5163 5370 -935 2345 90 0 3 chr5 9115394 9115705 -193969827 + AluY SINE Alu 1 310 -1 3352 152 39 33 chr5 9115705 9116181 -193969351 + L1MA2 LINE L1 5370 5858 -447 5734 99 17 1 chr5 9116189 9117060 -193968472 - L1PA13 LINE L1 -1 6162 5278 2480 139 13 13 chr5 9117060 9117511 -193968021 + L1MA2 LINE L1 5853 6304 0 22 35 0 0 chr5 9117959 9117988 -193967544 + AT_rich Low_complexity Low_complexity 1 29 0 413 297 101 9 chr5 9121060 9121279 -193964253 + L2 LINE L2 2301 2539 -775 2174 118 0 0 chr5 9121281 9121577 -193963955 + AluSq SINE Alu 2 297 -16 377 285 50 11 chr5 9122002 9122181 -193963351 + LTR33 LTR ERVL 334 519 -2 1498 266 136 51 chr5 9122774 9123375 -193962157 + L1MCa LINE L1 59 607 -6334 2340 175 24 0 chr5 9123375 9123797 -193961735 + MSTB1 LTR MaLR 1 432 0 1498 266 136 51 chr5 9123797 9125206 -193960326 + L1MCa LINE L1 607 2200 -4741 1422 254 84 28 chr5 9125247 9126280 -193959252 + L1MCa LINE L1 2479 3538 -3403 216 97 0 0 chr5 9126296 9126327 -193959205 + (CA)n Simple_repeat Simple_repeat 2 32 0 296 178 40 53 chr5 9126344 9126496 -193959036 + (TATAA)n Simple_repeat Simple_repeat 5 154 0 180 77 0 0 chr5 9127080 9127106 -193958426 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 352 277 132 76 chr5 9127345 9127846 -193957686 + L1ME4a LINE L1 5593 6121 0 376 262 56 0 chr5 9129739 9129846 -193955686 + MIR SINE MIR 2 114 -148 446 167 0 0 chr5 9129864 9129942 -193955590 - Tigger5 DNA MER2_type 0 2323 2246 335 213 0 27 chr5 9129991 9130066 -193955466 - Tigger5 DNA MER2_type -2231 92 20 651 291 36 4 chr5 9130375 9130626 -193954906 + MIR SINE MIR 3 261 -1 21 0 0 0 chr5 9130651 9130672 -193954860 + AT_rich Low_complexity Low_complexity 1 21 0 350 336 69 42 chr5 9131561 9131749 -193953783 - L2 LINE L2 -763 2551 2353 2077 122 84 29 chr5 9131749 9132092 -193953440 + THE1B LTR MaLR 1 362 -2 350 336 69 42 chr5 9132092 9132165 -193953367 - L2 LINE L2 -961 2353 2283 1134 258 56 12 chr5 9132373 9132783 -193952749 - MLT1H1 LTR MaLR -1 554 134 217 242 91 0 chr5 9132915 9132981 -193952551 + L2 LINE L2 2717 2788 -526 186 43 0 0 chr5 9133312 9133335 -193952197 + (T)n Simple_repeat Simple_repeat 1 23 0 192 323 15 0 chr5 9133475 9133540 -193951992 + MIR3 SINE MIR 101 166 -42 226 303 86 40 chr5 9133661 9133813 -193951719 + L3 LINE CR1 704 862 -715 234 285 102 54 chr5 9135615 9135801 -193949731 + MLT1J LTR MaLR 23 217 -294 954 192 0 0 chr5 9136567 9136718 -193948814 + AluJb SINE Alu 143 293 -19 2352 90 3 0 chr5 9136868 9137178 -193948354 + AluY SINE Alu 1 311 0 676 218 262 17 chr5 9139310 9139719 -193945813 + MLT1H LTR MaLR 39 547 -2 773 225 11 16 chr5 9139830 9140017 -193945515 - MER5A DNA MER1_type -3 186 1 23 54 0 0 chr5 9140794 9140831 -193944701 + AT_rich Low_complexity Low_complexity 1 37 0 47 19 0 0 chr5 9140948 9141002 -193944530 + AT_rich Low_complexity Low_complexity 1 54 0 28 0 0 0 chr5 9141127 9141155 -193944377 + AT_rich Low_complexity Low_complexity 1 28 0 386 165 65 24 chr5 9141157 9141327 -193944205 + (TA)n Simple_repeat Simple_repeat 2 178 0 328 281 87 58 chr5 9141870 9142112 -193943420 + L1ME LINE L1 5537 5785 -336 1285 184 83 0 chr5 9142517 9142792 -193942740 - Tigger1 DNA MER2_type -3 2415 2118 3938 142 14 7 chr5 9142792 9143498 -193942034 + MER50 LTR ERV1 1 711 -23 311 83 0 0 chr5 9143505 9143553 -193941979 - Tigger1 DNA MER2_type -303 2115 2068 5413 146 10 24 chr5 9143553 9144746 -193940786 + L1PB3 LINE L1 4853 6025 -129 2283 109 3 6 chr5 9144746 9145058 -193940474 + AluSx SINE Alu 1 311 -1 5413 146 10 24 chr5 9145058 9145187 -193940345 + L1PB3 LINE L1 6025 6154 0 11694 134 25 21 chr5 9145210 9147279 -193938253 - Tigger1 DNA MER2_type -340 2078 2 5308 81 28 4 chr5 9147730 9148479 -193937053 + L1PA11 LINE L1 5408 6174 0 426 20 0 0 chr5 9150367 9150418 -193935114 + (TATG)n Simple_repeat Simple_repeat 2 52 0 269 111 56 0 chr5 9150421 9150475 -193935057 - FLAM SINE Alu -16 117 61 24 32 0 0 chr5 9150588 9150619 -193934913 + AT_rich Low_complexity Low_complexity 1 31 0 449 299 15 45 chr5 9150724 9151139 -193934393 + L1MC4a LINE L1 3914 4326 -1820 355 318 74 37 chr5 9151229 9151528 -193934004 + L1MC4a LINE L1 4400 4709 -1437 772 265 133 27 chr5 9151827 9152512 -193933020 + L1MC4a LINE L1 5128 5398 -748 2418 55 3 7 chr5 9152536 9152846 -193932686 + AluY SINE Alu 3 311 0 2546 43 40 0 chr5 9153275 9153574 -193931958 - AluY SINE Alu 0 311 1 307 362 50 14 chr5 9153674 9153815 -193931717 + L1MC4a LINE L1 6543 6688 -1120 271 301 41 10 chr5 9153827 9154023 -193931509 + L1MC4 LINE L1 6847 7048 -994 433 286 26 87 chr5 9154490 9154895 -193930637 + L1MC5 LINE L1 7297 7676 -285 1549 213 20 25 chr5 9154895 9155294 -193930238 - MLT2C1 LTR ERVL 0 397 1 433 286 26 87 chr5 9155294 9155315 -193930217 + L1MC5 LINE L1 7676 7697 -264 350 228 13 0 chr5 9155331 9155410 -193930122 - MER63 DNA MER1_type -87 749 44 23 54 0 0 chr5 9155510 9155547 -193929985 + AT_rich Low_complexity Low_complexity 1 37 0 265 296 14 0 chr5 9155967 9156038 -193929494 + MIR SINE MIR 105 176 -86 297 0 0 0 chr5 9157382 9157415 -193928117 + (TG)n Simple_repeat Simple_repeat 2 34 0 2152 124 26 3 chr5 9157427 9157775 -193927757 + THE1B LTR MaLR 9 364 0 354 318 127 5 chr5 9158152 9158341 -193927191 - MIR SINE MIR -14 248 37 349 287 7 60 chr5 9158507 9158657 -193926875 + L2 LINE L2 3118 3259 -54 336 291 112 22 chr5 9159301 9159524 -193926008 - MIR SINE MIR -3 259 17 809 229 71 0 chr5 9160643 9160853 -193924679 + MER82 DNA MER2_type 3 227 -426 380 238 0 0 chr5 9160870 9160950 -193924582 + MER82 DNA MER2_type 573 652 -1 269 272 22 29 chr5 9162591 9162727 -193922805 - L1M4 LINE L1 -348 5830 5696 236 229 0 0 chr5 9163178 9163239 -193922293 - L1M4 LINE L1 -1318 4828 4768 23 0 0 0 chr5 9163609 9163632 -193921900 + AT_rich Low_complexity Low_complexity 1 23 0 570 207 9 0 chr5 9164027 9164170 -193921362 - L1MA10 LINE L1 -35 6299 5996 281 333 8 0 chr5 9164156 9164282 -193921250 - L1ME LINE L1 -644 5591 5465 * 1407 227 120 74 chr5 9164392 9165111 -193920421 - LTR1B LTR ERV1 -74 752 1 2611 237 41 69 chr5 9165112 9166183 -193919349 - L1ME LINE L1 -743 5472 4432 392 287 45 38 chr5 9166211 9166368 -193919164 - L1ME LINE L1 -2221 3994 3837 276 125 0 42 chr5 9166372 9166444 -193919088 + (TA)n Simple_repeat Simple_repeat 1 69 0 1967 296 78 8 chr5 9166491 9167742 -193917790 - L1ME LINE L1 -2400 3815 2460 1220 280 40 23 chr5 9167758 9167905 -193917627 - L1ME LINE L1 -5863 533 390 216 0 0 0 chr5 9167905 9167929 -193917603 + (TC)n Simple_repeat Simple_repeat 2 25 0 1220 280 40 23 chr5 9167929 9168252 -193917280 - L1ME LINE L1 -6006 390 55 731 239 23 11 chr5 9168870 9169046 -193916486 + MER45A DNA AcHobo 1 178 0 1550 197 89 53 chr5 9169166 9169316 -193916216 + MLT1C LTR MaLR 1 144 -323 2463 108 50 14 chr5 9169316 9169678 -193915854 + THE1C LTR MaLR 1 375 0 1550 197 89 53 chr5 9169678 9169978 -193915554 + MLT1C LTR MaLR 144 467 0 1811 190 39 33 chr5 9170309 9170672 -193914860 + MLT1A1 LTR MaLR 1 365 0 638 306 54 0 chr5 9172504 9172690 -193912842 + MIR SINE MIR 34 229 -33 197 365 12 12 chr5 9172761 9172846 -193912686 - L2 LINE L2 0 3313 3229 521 226 17 0 chr5 9172872 9172987 -193912545 - L1PB4 LINE L1 -2 6154 6038 2906 82 8 11 chr5 9173248 9173613 -193911919 - THE1B LTR MaLR 0 364 1 862 156 0 30 chr5 9174608 9174743 -193910789 + FLAM_C SINE Alu 1 131 -2 246 32 0 0 chr5 9174807 9174838 -193910694 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 297 53 0 0 chr5 9175091 9175129 -193910403 - MADE1 DNA Mariner -42 38 1 1588 173 98 57 chr5 9175312 9175751 -193909781 + MLT1C LTR MaLR 2 458 -9 734 189 128 36 chr5 9176721 9176917 -193908615 - MER20 DNA MER1_type -3 216 3 257 266 266 23 chr5 9176925 9177098 -193908434 + MIR SINE MIR 15 229 -33 1093 279 77 68 chr5 9177199 9177732 -193907800 + MER77 LTR ERV1 62 599 -6 2385 98 3 0 chr5 9177997 9178302 -193907230 + AluSg SINE Alu 1 306 -4 203 303 0 0 chr5 9178948 9179014 -193906518 + A-rich Low_complexity Low_complexity 3 68 0 222 295 121 54 chr5 9179072 9179296 -193906236 - L2 LINE L2 -46 3267 3029 231 276 48 35 chr5 9179593 9179738 -193905794 + L1M4 LINE L1 4288 4434 -1712 234 320 91 28 chr5 9180217 9180470 -193905062 - L1M4 LINE L1 -1756 4390 4122 299 333 42 17 chr5 9180666 9180786 -193904746 - MIR3 SINE MIR -21 187 65 903 162 61 18 chr5 9181701 9181929 -193903603 + L1MA7 LINE L1 6032 6269 -22 315 143 26 13 chr5 9181958 9182035 -193903497 + L1MA7 LINE L1 6213 6290 -1 2456 52 3 16 chr5 9183352 9183661 -193901871 + AluY SINE Alu 1 305 -6 392 243 84 99 chr5 9184009 9184211 -193901321 - MIR SINE MIR -44 218 20 2702 17 0 0 chr5 9184858 9185156 -193900376 - AluYa5 SINE Alu -13 298 1 480 207 178 65 chr5 9185333 9185502 -193900030 - ORSL DNA AcHobo -7 268 81 200 227 0 0 chr5 9186577 9186621 -193898911 + T-rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr5 9186681 9186707 -193898825 + AT_rich Low_complexity Low_complexity 1 26 0 455 328 51 38 chr5 9187065 9187537 -193897995 + L1M4 LINE L1 2434 2911 -3235 180 0 0 0 chr5 9187542 9187562 -193897970 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 4908 81 11 5 chr5 9187567 9188231 -193897301 - L1PA13 LINE L1 -20 6143 5476 2107 116 7 0 chr5 9188282 9188566 -193896966 + AluSx SINE Alu 1 286 -26 747 266 75 50 chr5 9188724 9188780 -193896752 + MLT2E LTR ERVL 43 96 -532 2113 115 3 16 chr5 9188780 9189085 -193896447 + AluSc SINE Alu 1 301 -8 747 266 75 50 chr5 9189085 9189347 -193896185 + MLT2E LTR ERVL 96 369 -259 268 103 0 0 chr5 9189388 9189427 -193896105 + THE1C LTR MaLR 1 39 -389 * 1011 133 40 96 chr5 9189403 9189652 -193895880 + THE1C LTR MaLR 141 375 0 413 232 36 58 chr5 9189735 9189873 -193895659 + ERVL LTR ERVL 3314 3448 -2316 1774 167 3 7 chr5 9190790 9191089 -193894443 + AluJb SINE Alu 1 298 -14 343 275 54 83 chr5 9191191 9191703 -193893829 + MLT1H LTR MaLR 15 549 0 1434 271 125 17 chr5 9191751 9192286 -193893246 + MLT1G1 LTR MaLR 3 595 0 403 293 55 85 chr5 9192286 9192592 -193892940 + MLT1I LTR MaLR 109 405 -4 482 270 182 35 chr5 9192598 9192916 -193892616 + L1M4 LINE L1 3122 3486 -2660 351 0 0 0 chr5 9192973 9193012 -193892520 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 31 0 0 chr5 9193646 9193678 -193891854 + AT_rich Low_complexity Low_complexity 1 32 0 180 111 0 0 chr5 9193807 9193834 -193891698 + (CA)n Simple_repeat Simple_repeat 2 28 0 348 231 0 0 chr5 9195595 9195660 -193889872 + MIR SINE MIR 81 145 -63 671 248 171 5 chr5 9195738 9195960 -193889572 - MIR SINE MIR -3 259 1 183 220 0 0 chr5 9196977 9197027 -193888505 + A-rich Low_complexity Low_complexity 1 50 0 211 333 71 0 chr5 9197072 9197171 -193888361 + L2 LINE L2 3187 3292 -21 180 241 37 56 chr5 9198316 9198370 -193887162 + MIR SINE MIR 71 123 -85 246 315 48 67 chr5 9198655 9198820 -193886712 + L3b LINE CR1 1185 1346 -237 21 0 0 0 chr5 9199233 9199254 -193886278 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr5 9199476 9199504 -193886028 + (A)n Simple_repeat Simple_repeat 1 28 0 32 57 0 0 chr5 9200667 9200720 -193884812 + GC_rich Low_complexity Low_complexity 1 53 0 21 57 0 0 chr5 9201666 9201701 -193883831 + GC_rich Low_complexity Low_complexity 1 35 0 482 259 0 0 chr5 9205144 9205252 -193880280 + MER45A DNA AcHobo 71 178 0 245 346 53 45 chr5 9206787 9206920 -193878612 + MIR3 SINE MIR 49 182 -26 29 0 0 0 chr5 9206999 9207028 -193878504 + AT_rich Low_complexity Low_complexity 1 29 0 408 315 31 8 chr5 9207182 9207309 -193878223 + L2 LINE L2 3184 3313 0 2224 94 3 13 chr5 9207827 9208125 -193877407 + AluSg SINE Alu 1 295 -15 21 89 0 0 chr5 9209817 9209873 -193875659 + AT_rich Low_complexity Low_complexity 1 56 0 1602 181 0 11 chr5 9210509 9210786 -193874746 + AluJb SINE Alu 1 274 -38 2139 129 40 35 chr5 9211775 9212148 -193873384 + THE1C LTR MaLR 1 375 0 268 188 27 20 chr5 9212230 9212379 -193873153 + (TA)n Simple_repeat Simple_repeat 1 150 0 190 106 43 0 chr5 9212437 9212484 -193873048 + (TA)n Simple_repeat Simple_repeat 1 49 0 189 49 24 49 chr5 9212519 9212560 -193872972 + (TTA)n Simple_repeat Simple_repeat 2 41 0 33 0 0 0 chr5 9212665 9212698 -193872834 + AT_rich Low_complexity Low_complexity 1 33 0 415 238 113 61 chr5 9213894 9214125 -193871407 - MLT1L LTR MaLR -365 250 8 21 0 0 0 chr5 9215572 9215593 -193869939 + AT_rich Low_complexity Low_complexity 1 21 0 713 246 108 38 chr5 9215725 9215912 -193869620 + L1ME2 LINE L1 1874 2046 -4675 1858 160 7 0 chr5 9215912 9216212 -193869320 + AluSx SINE Alu 6 307 -5 713 246 108 38 chr5 9216212 9216497 -193869035 + L1ME2 LINE L1 2046 2429 -4292 442 295 80 20 chr5 9216615 9217026 -193868506 + L1ME2 LINE L1 2401 2834 -3706 2053 247 104 15 chr5 9217031 9218085 -193867447 + L1ME2 LINE L1 5373 6518 -40 22 56 0 0 chr5 9218211 9218247 -193867285 + AT_rich Low_complexity Low_complexity 1 36 0 639 237 0 0 chr5 9218430 9218561 -193866971 + FLAM_C SINE Alu 1 131 -12 194 335 57 10 chr5 9221208 9221321 -193864211 + MIR SINE MIR 6 126 -82 230 79 0 26 chr5 9221669 9221707 -193863825 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 2527 43 7 7 chr5 9222576 9222879 -193862653 + AluY SINE Alu 1 303 -8 24 53 0 0 chr5 9222969 9223007 -193862525 + AT_rich Low_complexity Low_complexity 1 38 0 1975 89 63 7 chr5 9224220 9224489 -193861043 - AluSc SINE Alu -25 284 1 273 135 0 0 chr5 9224807 9224859 -193860673 + (TGG)n Simple_repeat Simple_repeat 1 52 0 689 51 31 0 chr5 9224959 9225057 -193860475 - THE1A-int LTR MaLR -1479 101 1 2291 128 14 8 chr5 9225057 9225410 -193860122 - THE1A LTR MaLR 0 355 1 245 155 12 119 chr5 9226137 9226221 -193859311 - L1MB7 LINE L1 -171 6007 5933 235 94 62 62 chr5 9226528 9226592 -193858940 - L1MA9 LINE L1 -10 6302 6239 302 183 0 14 chr5 9226609 9226680 -193858852 - L1MA9 LINE L1 -153 6159 6090 * 314 161 46 146 chr5 9226673 9226839 -193858693 + L1P4 LINE L1 5711 5860 -314 215 247 146 34 chr5 9228033 9228122 -193857410 + MIR SINE MIR 157 255 -7 2157 115 0 7 chr5 9228642 9228963 -193856569 - AluSx SINE Alu 0 319 1 856 278 16 20 chr5 9229039 9229291 -193856241 - MIR SINE MIR 0 262 12 205 220 121 33 chr5 9229818 9229909 -193855623 - MIR SINE MIR -32 230 132 2350 81 0 0 chr5 9230209 9230506 -193855026 + AluY SINE Alu 3 299 -12 1708 219 56 16 chr5 9230597 9231045 -193854487 - MLT1C LTR MaLR -1 466 1 2228 90 11 74 chr5 9231150 9231527 -193854005 - THE1A LTR MaLR 0 355 3 3348 78 36 0 chr5 9231529 9232002 -193853530 - THE1A-int LTR MaLR 0 1580 1091 2647 188 39 26 chr5 9232111 9232730 -193852802 - L1MB8 LINE L1 -211 5967 5329 1947 144 32 32 chr5 9232730 9233105 -193852427 + THE1C LTR MaLR 1 375 0 2647 188 39 26 chr5 9233105 9233138 -193852394 - L1MB8 LINE L1 -849 5329 5298 1071 268 17 0 chr5 9234828 9235119 -193850413 - LTR16A LTR ERVL 0 450 155 189 281 74 44 chr5 9235218 9235333 -193850199 + MIR SINE MIR 63 183 -69 1036 190 156 50 chr5 9235540 9235898 -193849634 + MSTD LTR MaLR 1 396 0 1549 206 125 20 chr5 9235974 9236431 -193849101 - MLT1D LTR MaLR 0 505 1 182 286 0 0 chr5 9236472 9236507 -193849025 + L2 LINE L2 3144 3178 -94 21 0 0 0 chr5 9237079 9237100 -193848432 + AT_rich Low_complexity Low_complexity 1 21 0 1519 233 69 2 chr5 9238002 9238409 -193847123 + MLT2B1 LTR ERVL 31 464 -56 489 143 44 15 chr5 9238410 9238753 -193846779 + (TCTA)n Simple_repeat Simple_repeat 1 353 0 21 0 0 0 chr5 9239542 9239563 -193845969 + AT_rich Low_complexity Low_complexity 1 21 0 15498 129 19 32 chr5 9240311 9243075 -193842457 - Tigger4(Zombi) DNA MER2_type -5 2726 1 22 35 0 0 chr5 9243106 9243135 -193842397 + AT_rich Low_complexity Low_complexity 1 29 0 190 368 11 0 chr5 9244183 9244270 -193841262 + L2 LINE L2 3221 3308 -5 181 362 66 26 chr5 9244977 9245129 -193840403 + L3 LINE CR1 1323 1480 -97 2173 151 89 5 chr5 9245158 9245549 -193839983 - MSTB LTR MaLR 0 426 3 1971 208 27 0 chr5 9246834 9247309 -193838223 - Charlie1 DNA MER1_type -67 2694 2207 1229 246 59 60 chr5 9247492 9247632 -193837900 + L1ME2 LINE L1 4602 4741 -1405 2345 75 0 16 chr5 9247632 9247940 -193837592 - AluY SINE Alu 0 311 9 1229 246 59 60 chr5 9247940 9248544 -193836988 + L1ME2 LINE L1 4741 5345 -801 1604 108 62 22 chr5 9248544 9248885 -193836647 - MER4A LTR ERV1 0 664 252 855 121 0 13 chr5 9248911 9249060 -193836472 - MER4A LTR ERV1 -517 147 1 2754 238 36 13 chr5 9249060 9249855 -193835677 + L1ME2 LINE L1 5342 6155 -9 218 193 35 35 chr5 9251273 9251330 -193834202 + MIR SINE MIR 105 161 -101 424 241 40 125 chr5 9251782 9252134 -193833398 - MLT1K LTR MaLR -116 472 151 980 156 92 29 chr5 9252284 9252522 -193833010 - MLT1D LTR MaLR 0 505 253 890 193 23 6 chr5 9254647 9254818 -193830714 + MER2 DNA MER2_type 1 174 -171 635 183 23 11 chr5 9254862 9255037 -193830495 + CT-rich Low_complexity Low_complexity 3 179 0 280 87 0 0 chr5 9256514 9256560 -193828972 - MER5C DNA MER1_type -46 278 233 372 291 51 17 chr5 9256586 9256703 -193828829 - MER5C DNA MER1_type -200 124 4 2599 193 16 10 chr5 9256807 9256892 -193828640 + L1MC1 LINE L1 4630 4713 -1620 2093 144 0 7 chr5 9256892 9257197 -193828335 + AluSc SINE Alu 1 303 -6 2599 193 16 10 chr5 9257197 9258133 -193827399 + L1MC1 LINE L1 4713 5656 -677 3522 116 10 48 chr5 9258133 9258756 -193826776 + LTR14B LTR ERVK 10 608 0 2123 139 15 22 chr5 9258756 9259160 -193826372 + L1MC1 LINE L1 5657 6057 -276 1380 195 24 7 chr5 9259189 9259476 -193826056 + L1MC1 LINE L1 6036 6327 -6 231 125 0 0 chr5 9260330 9260370 -193825162 + (TC)n Simple_repeat Simple_repeat 1 40 0 1730 185 3 10 chr5 9261105 9261403 -193824129 - AluJb SINE Alu -16 296 1 268 250 9 9 chr5 9261510 9261618 -193823914 + (TATATG)n Simple_repeat Simple_repeat 5 112 0 3021 147 30 63 chr5 9261640 9262273 -193823259 - LTR9 LTR ERV1 0 612 1 4706 205 30 29 chr5 9262411 9262676 -193822856 + L1MD2 LINE L1 4795 5058 -1301 207 0 0 0 chr5 9262676 9262699 -193822833 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4706 205 30 29 chr5 9262699 9263997 -193821535 + L1MD2 LINE L1 5058 6358 -1 24 0 0 0 chr5 9264527 9264551 -193820981 + AT_rich Low_complexity Low_complexity 1 24 0 800 131 5 5 chr5 9365480 9365668 -193719864 + HSMAR2 DNA Mariner 918 1208 -94 1286 155 14 9 chr5 9365668 9365881 -193719651 + AluJo SINE Alu 75 288 -24 579 115 10 0 chr5 9365888 9365992 -193719540 + HSMAR2 DNA Mariner 1197 1301 -1 343 245 11 0 chr5 9365999 9366093 -193719439 + MIR SINE MIR 168 262 0 264 221 176 0 chr5 9366381 9366449 -193719083 + MIR SINE MIR 68 147 -115 578 270 0 0 chr5 9366496 9366607 -193718925 + FLAM_A SINE Alu 2 112 -30 231 196 33 87 chr5 9366815 9366907 -193718625 - MLT2E LTR ERVL 0 628 583 1206 173 16 8 chr5 9367907 9368150 -193717382 + L1MA8 LINE L1 5813 6057 -234 510 266 56 0 chr5 9370070 9370213 -193715319 - MIR SINE MIR -107 155 5 215 324 88 29 chr5 9370926 9371062 -193714470 + MIR3 SINE MIR 34 177 -31 317 217 58 132 chr5 9371070 9371365 -193714167 - L1MC4 LINE L1 -7 8035 7763 720 40 40 10 chr5 9371394 9371494 -193714038 + MER11A LTR ERVK 1150 1252 -14 1397 276 50 32 chr5 9371494 9372189 -193713343 - L1MC4 LINE L1 -296 7746 7039 597 191 5 79 chr5 9372438 9372577 -193712955 - L1PA4 LINE L1 -429 5876 5753 2178 27 0 0 chr5 9372577 9372834 -193712698 + L1PA4 LINE L1 5895 6151 -4 597 191 5 79 chr5 9372834 9372883 -193712649 - L1MA3 LINE L1 -552 5753 5702 458 222 0 8 chr5 9374368 9374485 -193711047 + (CATATA)n Simple_repeat Simple_repeat 3 118 0 1511 97 4 26 chr5 9374513 9374741 -193710791 - L1PA7 LINE L1 -2 6152 5930 746 175 138 3 chr5 9374878 9375059 -193710473 - MLT1J LTR MaLR -46 459 228 21 0 0 0 chr5 9375895 9375916 -193709616 + AT_rich Low_complexity Low_complexity 1 21 0 40122 39 24 2 chr5 9375939 9381958 -193703574 - L1PA3 LINE L1 0 6155 2 192 158 0 0 chr5 9383246 9383284 -193702248 + A-rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr5 9383425 9383453 -193702079 + AT_rich Low_complexity Low_complexity 1 28 0 479 323 108 53 chr5 9383976 9384391 -193701141 - L1MC4a LINE L1 -1980 5828 5391 267 206 0 14 chr5 9384410 9384483 -193701049 - L1MC4a LINE L1 -821 5345 5274 2192 121 3 0 chr5 9384755 9385062 -193700470 - AluSq SINE Alu -5 308 1 1082 221 103 29 chr5 9385375 9385723 -193699809 + MLT1A2 LTR MaLR 1 467 0 240 326 20 31 chr5 9385752 9385850 -193699682 + L3b LINE CR1 1328 1424 -159 1770 181 79 65 chr5 9387817 9388242 -193697290 - MER67D LTR ERV1 0 514 79 2242 119 48 20 chr5 9388242 9388596 -193696936 - THE1B LTR MaLR 0 364 1 1770 181 79 65 chr5 9388596 9388677 -193696855 - MER67D LTR ERV1 -435 79 1 833 241 20 24 chr5 9389697 9389950 -193695582 - MLT1J LTR MaLR -259 252 1 342 206 0 72 chr5 9390026 9390123 -193695409 + L1MC4 LINE L1 6614 6703 -1339 229 85 0 43 chr5 9390128 9390175 -193695357 + (TA)n Simple_repeat Simple_repeat 1 45 0 243 0 0 0 chr5 9390175 9390202 -193695330 + (CA)n Simple_repeat Simple_repeat 2 28 0 485 205 26 96 chr5 9390325 9390481 -193695051 - MIR SINE MIR -2 260 116 391 164 273 0 chr5 9391696 9391806 -193693726 - MER67D LTR ERV1 -5 509 370 243 0 0 0 chr5 9391808 9391835 -193693697 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2177 19 8 0 chr5 9391865 9392124 -193693408 - L1PA2 LINE L1 0 6155 5895 287 28 0 0 chr5 9392124 9392160 -193693372 + L1P1 LINE L1 5738 5773 -382 5238 129 32 14 chr5 9392490 9393750 -193691782 + L1PA16 LINE L1 4877 6162 -4 233 263 92 26 chr5 9393853 9393929 -193691603 - MIR SINE MIR -118 144 64 1148 215 64 82 chr5 9393963 9394429 -193691103 + MLT1C LTR MaLR 3 460 -7 286 256 12 12 chr5 9394680 9394762 -193690770 - L1ME3A LINE L1 -258 5912 5831 325 273 56 39 chr5 9394788 9395074 -193690458 - L1ME3A LINE L1 -1445 4701 4411 1059 196 63 72 chr5 9395074 9395421 -193690111 + MER2 DNA MER2_type 1 344 0 615 273 76 52 chr5 9395763 9396019 -193689513 - L1M4 LINE L1 -1465 4681 4433 1078 194 64 67 chr5 9396019 9396364 -193689168 + MER2 DNA MER2_type 1 344 0 615 273 76 52 chr5 9396364 9396984 -193688548 - L1M4 LINE L1 -1713 4433 3784 406 326 0 20 chr5 9397707 9397903 -193687629 + L1ME LINE L1 5512 5703 -418 545 176 104 40 chr5 9397969 9398094 -193687438 - MLT1H LTR MaLR -15 534 402 619 230 158 10 chr5 9398136 9398345 -193687187 - MLT1H LTR MaLR -231 318 79 618 167 0 0 chr5 9398490 9398610 -193686922 + L1MA7 LINE L1 6172 6291 0 185 0 40 0 chr5 9399438 9399463 -193686069 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1180 152 5 10 chr5 9399469 9399673 -193685859 - MLT1A1 LTR MaLR -162 203 1 796 282 173 19 chr5 9399683 9400006 -193685526 - L2 LINE L2 -784 2530 2158 277 297 40 0 chr5 9400025 9400126 -193685406 + L1M4 LINE L1 4508 4612 -1534 4436 123 3 1 chr5 9400165 9400821 -193684711 + L1PA15 LINE L1 5496 6152 -13 291 191 0 0 chr5 9402672 9402735 -193682797 + (CA)n Simple_repeat Simple_repeat 2 64 0 539 228 127 6 chr5 9402910 9403068 -193682464 + L1PB4 LINE L1 5890 6066 -90 316 212 0 0 chr5 9403096 9403162 -193682370 + L1PB4 LINE L1 5998 6063 -93 321 217 0 0 chr5 9403193 9403262 -193682270 + L1PB4 LINE L1 5998 6066 -90 782 188 19 19 chr5 9403288 9403448 -193682084 + L1PB4 LINE L1 5996 6155 -1 2306 157 14 5 chr5 9403743 9404157 -193681375 + L1MB1 LINE L1 5740 6157 -11 761 64 27 0 chr5 9404159 9404269 -193681263 + (CAATA)n Simple_repeat Simple_repeat 1 113 0 234 0 0 0 chr5 9404398 9404424 -193681108 + (TG)n Simple_repeat Simple_repeat 2 27 0 342 321 132 6 chr5 9404511 9404670 -193680862 - L2 LINE L2 -10 3303 3125 2692 13 0 10 chr5 9405068 9405372 -193680160 + AluYa5 SINE Alu 1 301 -10 1374 199 55 19 chr5 9406243 9406257 -193679275 - MLT1A1 LTR MaLR -12 353 341 2200 172 39 9 chr5 9406257 9406688 -193678844 - L1MC1 LINE L1 -9 6324 5881 1374 199 55 19 chr5 9406688 9406985 -193678547 - MLT1A1 LTR MaLR -24 341 31 1474 114 42 4 chr5 9406997 9407261 -193678271 - L1MC1 LINE L1 -411 5922 5649 199 325 94 26 chr5 9407271 9407388 -193678144 + MIR SINE MIR 132 256 -6 22 0 0 0 chr5 9408483 9408505 -193677027 + AT_rich Low_complexity Low_complexity 1 22 0 1837 72 13 4 chr5 9409245 9409621 -193675911 - L1P3 LINE L1 -671 5483 5105 3544 34 5 5 chr5 9409621 9410057 -193675475 - L1PA4 LINE L1 -1 6154 5719 2737 25 25 0 chr5 9410057 9410423 -193675109 + L1P2 LINE L1 5285 5659 -495 902 77 97 5 chr5 9410525 9410721 -193674811 - L1P LINE L1 -826 5320 5107 3469 32 11 5 chr5 9410722 9411155 -193674377 - L1PA4 LINE L1 -1 6154 5719 3266 29 2 5 chr5 9411155 9411574 -193673958 + L1PA4 LINE L1 5285 5702 -453 2358 83 0 0 chr5 9411576 9411914 -193673618 - L1P LINE L1 -1036 5110 4773 1833 54 50 8 chr5 9411908 9412169 -193673363 + L1P3 LINE L1 5483 5754 -400 * 3453 127 7 39 chr5 9412733 9413276 -193672256 + MER1A DNA MER1_type 2 527 0 23 33 0 0 chr5 9413666 9413696 -193671836 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr5 9413888 9413910 -193671622 + AT_rich Low_complexity Low_complexity 1 22 0 21 82 0 0 chr5 9413987 9414036 -193671496 + AT_rich Low_complexity Low_complexity 1 49 0 729 175 15 0 chr5 9414991 9415128 -193670404 + MLT1F LTR MaLR 404 542 0 194 227 0 107 chr5 9415350 9415425 -193670107 + L2 LINE L2 3247 3313 0 706 216 49 25 chr5 9415566 9415728 -193669804 - FRAM SINE Alu 0 166 1 643 275 5 37 chr5 9415742 9415931 -193669601 - MIR SINE MIR -9 253 71 210 339 169 0 chr5 9415997 9416121 -193669411 + L2 LINE L2 3128 3272 0 622 208 69 25 chr5 9416834 9416993 -193668539 - FRAM SINE Alu 0 166 1 596 289 5 32 chr5 9417009 9417196 -193668336 - MIR SINE MIR -10 252 71 287 331 142 0 chr5 9417263 9417390 -193668142 + L2 LINE L2 3128 3272 0 22 0 0 0 chr5 9418224 9418246 -193667286 + AT_rich Low_complexity Low_complexity 1 22 0 382 280 119 88 chr5 9418317 9418771 -193666761 - HAL1b LINE L1 -661 687 220 245 328 0 0 chr5 9420824 9420891 -193664641 + L2 LINE L2 3187 3253 -60 358 270 6 12 chr5 9423022 9423358 -193662174 + (TG)n Simple_repeat Simple_repeat 1 334 0 466 220 58 62 chr5 9423358 9423545 -193661987 - L1MD2 LINE L1 -89 6077 5959 21 36 0 0 chr5 9424320 9424348 -193661184 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr5 9424544 9424573 -193660959 + AT_rich Low_complexity Low_complexity 1 29 0 502 321 16 25 chr5 9426380 9426597 -193658935 - MIR SINE MIR -31 231 16 374 257 14 42 chr5 9426733 9426877 -193658655 + LTR52 LTR ERVL 11 150 -271 216 292 14 0 chr5 9427618 9427690 -193657842 + L2 LINE L2 2245 2317 -997 379 227 78 31 chr5 9427729 9427857 -193657675 + MLT1J LTR MaLR 51 184 -327 198 179 0 0 chr5 9428106 9428145 -193657387 + L2 LINE L2 2410 2448 -866 236 364 46 31 chr5 9428189 9428384 -193657148 + L2 LINE L2 2575 2772 -542 24 0 0 0 chr5 9428604 9428628 -193656904 + AT_rich Low_complexity Low_complexity 1 24 0 1036 207 49 0 chr5 9428838 9429041 -193656491 + MER58A DNA MER1_type 12 224 0 40 0 0 0 chr5 9429048 9429088 -193656444 + AT_rich Low_complexity Low_complexity 1 40 0 1356 134 0 15 chr5 9429131 9429333 -193656199 + AluSq SINE Alu 103 301 -12 302 286 29 38 chr5 9429556 9429661 -193655871 + L2 LINE L2 2953 3056 -257 188 273 18 0 chr5 9429778 9429833 -193655699 + L2 LINE L2 3227 3282 -31 225 65 0 0 chr5 9429858 9429889 -193655643 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 998 163 0 77 chr5 9431049 9431121 -193654411 + L1PA16 LINE L1 5903 5979 -187 2375 100 0 0 chr5 9431121 9431420 -193654112 + AluSq SINE Alu 1 299 -14 998 163 0 77 chr5 9431420 9431556 -193653976 + L1PA16 LINE L1 5979 6095 -71 5265 168 95 23 chr5 9431567 9432510 -193653022 - LTR28 LTR ERV1 -9 1011 1 305 171 29 0 chr5 9432510 9432580 -193652952 + L1PA16 LINE L1 6095 6166 0 194 287 250 0 chr5 9433319 9433427 -193652105 + L2 LINE L2 3138 3272 0 967 184 162 5 chr5 9433467 9433727 -193651805 - MER51A LTR ERV1 -11 629 334 228 139 0 0 chr5 9433716 9433752 -193651780 - MER51A LTR ERV1 -598 36 1 * 4710 46 0 1 chr5 9434559 9435158 -193650374 - L1P LINE L1 -741 5424 4830 6229 31 19 3 chr5 9435158 9435896 -193649636 + L1PA4 LINE L1 5402 6155 0 406 298 107 28 chr5 9436270 9436589 -193648943 + L2 LINE L2 2921 3264 -49 383 83 33 0 chr5 9437579 9437639 -193647893 - L1MD3 LINE L1 -13 7982 7921 * 578 191 36 0 chr5 9437626 9437736 -193647796 + L1MB5 LINE L1 6024 6137 -37 216 0 0 0 chr5 9438861 9438885 -193646647 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 21 57 0 0 chr5 9439262 9439297 -193646235 + AT_rich Low_complexity Low_complexity 1 35 0 333 0 0 0 chr5 9439748 9439785 -193645747 + (CA)n Simple_repeat Simple_repeat 2 38 0 22 80 0 0 chr5 9442933 9442983 -193642549 + AT_rich Low_complexity Low_complexity 1 50 0 367 195 35 41 chr5 9443029 9443248 -193642284 + (TA)n Simple_repeat Simple_repeat 1 217 0 402 244 111 7 chr5 9443996 9444131 -193641401 - L2 LINE L2 -2 3270 3122 318 26 0 0 chr5 9444499 9444538 -193640994 + (TG)n Simple_repeat Simple_repeat 1 39 0 22 35 0 0 chr5 9444921 9444950 -193640582 + AT_rich Low_complexity Low_complexity 1 29 0 1840 116 81 18 chr5 9445546 9445861 -193639671 - AluSg SINE Alu 0 310 1 383 210 23 0 chr5 9445919 9446095 -193639437 + (TG)n Simple_repeat Simple_repeat 1 180 0 206 322 91 13 chr5 9446853 9446979 -193638553 + MIR SINE MIR 2 133 -75 225 301 0 24 chr5 9448010 9448026 -193637506 + GA-rich Low_complexity Low_complexity 3 18 -65 1528 181 44 17 chr5 9448026 9448324 -193637208 + AluSq SINE Alu 1 306 -7 225 301 0 24 chr5 9448324 9448390 -193637142 + GA-rich Low_complexity Low_complexity 18 83 0 2478 78 5 111 chr5 9450731 9451153 -193634379 + MER51B LTR ERV1 1 377 0 236 310 23 0 chr5 9451179 9451266 -193634266 - MLT1I LTR MaLR -4 405 317 417 302 34 6 chr5 9451430 9451609 -193633923 - MER20 DNA MER1_type 0 219 36 309 344 16 21 chr5 9451764 9451956 -193633576 - L2 LINE L2 -666 2648 2458 223 354 24 24 chr5 9452027 9452154 -193633378 - MER5A DNA MER1_type -25 164 38 302 229 0 0 chr5 9453079 9453140 -193632392 + MLT1I LTR MaLR 348 408 -1 1759 62 0 0 chr5 9454816 9455025 -193630507 + AluY SINE Alu 89 297 -14 2100 138 3 0 chr5 9455149 9455447 -193630085 + AluSx SINE Alu 1 299 -13 2248 137 108 7 chr5 9456098 9456507 -193629025 + LTR7 LTR ERV1 1 450 0 34338 116 10 27 chr5 9456507 9462234 -193623298 + HERVH LTR ERV1 1 5947 -1766 2113 128 67 21 chr5 9462334 9462709 -193622823 - LTR7 LTR ERV1 -58 392 1 2094 82 7 23 chr5 9462709 9463013 -193622519 - HERVH LTR ERV1 0 7713 7415 2811 98 2 62 chr5 9463013 9463463 -193622069 - HERVH LTR ERV1 -134 7579 7157 347 235 49 0 chr5 9463433 9463514 -193622018 - HERVH LTR ERV1 -1670 6043 5959 * 4757 27 0 0 chr5 9463519 9464082 -193621450 - L1PA4 LINE L1 -750 5396 4834 6665 30 3 3 chr5 9464082 9464850 -193620682 + L1PA4 LINE L1 5377 6154 -1 1555 78 46 1 chr5 9464851 9465196 -193620336 + L1P3 LINE L1 5107 5465 -707 225 286 60 24 chr5 9565291 9565375 -193520157 + MIR SINE MIR 145 231 -31 479 214 5 2 chr5 9565677 9566110 -193519422 + (TG)n Simple_repeat Simple_repeat 1 434 0 1996 258 131 35 chr5 9566708 9567679 -193517853 + HAL1 LINE L1 1137 2200 -307 352 364 52 19 chr5 9568015 9568284 -193517248 - L2 LINE L2 -2493 821 544 421 189 56 0 chr5 9569326 9569416 -193516116 + L1MA8 LINE L1 6191 6285 -6 21 0 0 0 chr5 9569417 9569438 -193516094 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr5 9569841 9569878 -193515654 + (TC)n Simple_repeat Simple_repeat 2 38 0 324 0 0 0 chr5 9569880 9569916 -193515616 + (TG)n Simple_repeat Simple_repeat 1 36 0 1859 202 18 27 chr5 9570298 9570374 -193515158 - L1P LINE L1 -2451 3695 3620 3305 79 9 5 chr5 9570374 9570816 -193514716 + MLT2A1 LTR ERVL 1 444 0 1859 202 18 27 chr5 9570816 9571393 -193514139 - L1P LINE L1 -2526 3620 2856 2001 218 75 32 chr5 9571401 9572097 -193513435 - L1M4 LINE L1 -1052 5094 4372 698 201 67 18 chr5 9572851 9573015 -193512517 + LOR1b LTR ERV1 290 461 0 * 1435 155 49 8 chr5 9573015 9573259 -193512273 - MER74A LTR ERVL -304 254 1 846 177 89 58 chr5 9573259 9573519 -193512013 - MLT1E2 LTR MaLR -322 332 71 405 140 18 9 chr5 9573569 9573683 -193511849 + (TA)n Simple_repeat Simple_repeat 1 115 0 1644 148 3 48 chr5 9573721 9574011 -193511521 + AluSx SINE Alu 31 307 -5 262 314 38 0 chr5 9574266 9574371 -193511161 - L1ME LINE L1 -437 5684 5576 1702 192 35 24 chr5 9575193 9575532 -193510000 + MER61A LTR ERV1 1 343 0 1492 163 67 15 chr5 9576594 9576766 -193508766 - L1MA10 LINE L1 -1 6333 6171 402 108 0 0 chr5 9576766 9576831 -193508701 + (TTGG)n Simple_repeat Simple_repeat 3 67 0 1492 163 67 15 chr5 9576831 9576989 -193508543 - L1MA10 LINE L1 -163 6171 5986 30 0 0 0 chr5 9576992 9577022 -193508510 + AT_rich Low_complexity Low_complexity 1 30 0 17489 112 8 1 chr5 9577022 9580319 -193505213 - L1PA8 LINE L1 -1 6171 2855 531 316 113 0 chr5 9581552 9581729 -193503803 + MIR SINE MIR 22 218 -44 183 179 269 0 chr5 9581935 9582002 -193503530 + L2 LINE L2 3186 3270 -2 212 208 0 21 chr5 9582584 9582632 -193502900 + CT-rich Low_complexity Low_complexity 4 50 0 247 242 88 22 chr5 9584777 9584868 -193500664 + L1M4c LINE L1 1621 1717 -4667 21 36 0 0 chr5 9585016 9585044 -193500488 + AT_rich Low_complexity Low_complexity 1 28 0 391 220 80 0 chr5 9585381 9585481 -193500051 - LTR16C LTR ERVL -4 487 380 5894 129 33 11 chr5 9586127 9586186 -193499346 + L1PA13 LINE L1 3616 3672 -2491 333 0 0 0 chr5 9586186 9586223 -193499309 + (CA)n Simple_repeat Simple_repeat 2 38 0 5894 129 33 11 chr5 9586223 9588607 -193496925 + L1PA13 LINE L1 3672 6148 -15 742 232 38 64 chr5 9588635 9589616 -193495916 + L1ME1 LINE L1 5083 6043 -123 261 0 0 0 chr5 9589815 9589844 -193495688 + (A)n Simple_repeat Simple_repeat 1 29 0 2569 106 25 11 chr5 9589862 9590221 -193495311 + THE1B LTR MaLR 1 364 0 3861 127 28 55 chr5 9590892 9591570 -193493962 + L1MC1 LINE L1 5674 6333 0 343 194 125 56 chr5 9592371 9592515 -193493017 + L1ME2 LINE L1 5700 5856 -308 969 251 24 0 chr5 9592611 9592822 -193492710 - MIR SINE MIR 0 262 47 884 143 0 19 chr5 9593776 9593930 -193491602 - L1MA5 LINE L1 -6 6294 6144 3775 98 11 4 chr5 9593939 9594480 -193491052 + L1P LINE L1 4186 4730 -1416 29260 34 194 5 chr5 9594583 9598520 -193487012 - L1P LINE L1 -1460 4686 4 488 295 80 68 chr5 9599571 9599984 -193485548 + L2 LINE L2 1629 2046 -1268 1601 190 10 13 chr5 9601415 9601715 -193483817 - AluJo SINE Alu -13 299 1 318 275 92 98 chr5 9601867 9602194 -193483338 + L2 LINE L2 1624 1948 -1366 258 208 44 30 chr5 9603463 9603581 -193481951 - MLT1G1 LTR MaLR 0 582 319 187 194 0 28 chr5 9603925 9603961 -193481571 + MIR SINE MIR 31 65 -197 180 247 24 24 chr5 9604175 9604260 -193481272 - L2 LINE L2 -1619 1695 1611 826 210 28 23 chr5 9604897 9605073 -193480459 - MER45A DNA AcHobo 0 178 2 1669 160 65 0 chr5 9605761 9606036 -193479496 - AluSx SINE Alu -19 293 1 28 48 0 0 chr5 9607373 9607415 -193478117 + AT_rich Low_complexity Low_complexity 1 42 0 1485 163 30 22 chr5 9607415 9607685 -193477847 + THE1C LTR MaLR 1 272 -103 6366 100 16 16 chr5 9607685 9609034 -193476498 + L1PA14 LINE L1 4603 5950 -211 1772 161 14 3 chr5 9609034 9609325 -193476207 + AluSx SINE Alu 1 294 -18 6366 100 16 16 chr5 9609325 9609527 -193476005 + L1PA14 LINE L1 5949 6150 -11 25 0 0 0 chr5 9609568 9609593 -193475939 + AT_rich Low_complexity Low_complexity 1 25 0 345 320 8 16 chr5 9609844 9609972 -193475560 + MIR SINE MIR 116 242 -20 13800 148 11 112 chr5 9610509 9613726 -193471806 - L1P LINE L1 -3242 2904 12 1195 265 40 11 chr5 9615459 9615806 -193469726 - LTR16B LTR ERVL 0 464 108 862 318 75 32 chr5 9615920 9616389 -193469143 + MLT1K LTR MaLR 1 489 -99 235 232 146 0 chr5 9616569 9616651 -193468881 + MLT1K LTR MaLR 495 588 0 1014 266 219 18 chr5 9616835 9617030 -193468502 - LTR50 LTR ERVL -30 765 610 2447 51 17 0 chr5 9617030 9617324 -193468208 + L1PA7 LINE L1 5854 6152 -2 1014 266 219 18 chr5 9617324 9617700 -193467832 - LTR50 LTR ERVL -185 610 79 1371 48 0 12 chr5 9620751 9620961 -193464571 + L1PA5 LINE L1 5988 6195 0 470 283 107 22 chr5 9622410 9622667 -193462865 - MLT1H1 LTR MaLR -76 491 190 725 274 17 6 chr5 9622735 9622914 -193462618 - MLT1H1 LTR MaLR -374 181 1 189 296 91 0 chr5 9623667 9623755 -193461777 + MIR SINE MIR 137 232 -30 253 170 21 0 chr5 9625558 9625605 -193459927 - MER5A DNA MER1_type -61 128 81 8315 16 0 3 chr5 9625708 9627154 -193458378 + L1PA2 LINE L1 4711 6155 0 590 181 123 32 chr5 9627811 9627966 -193457566 - ERVL LTR ERVL -2153 3611 3443 241 300 54 56 chr5 9628694 9628838 -193456694 - MIR SINE MIR -64 144 15 322 301 90 9 chr5 9629101 9629217 -193456315 - MIR SINE MIR -62 146 43 197 277 21 0 chr5 9629791 9629838 -193455694 - L2 LINE L2 0 3272 3225 333 330 30 0 chr5 9629914 9630014 -193455518 + MER5A DNA MER1_type 10 112 -77 2707 140 19 19 chr5 9630397 9630825 -193454707 - MSTA LTR MaLR 0 428 1 1913 126 3 85 chr5 9630825 9631190 -193454342 - MSTA-int LTR MaLR 0 1651 1317 * 3089 154 27 8 chr5 9631188 9631708 -193453824 + MSTA-int LTR MaLR 1122 1651 0 2862 120 31 5 chr5 9631708 9632125 -193453407 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr5 9632409 9632431 -193453101 + AT_rich Low_complexity Low_complexity 1 22 0 313 319 0 0 chr5 9632766 9632857 -193452675 - MIR SINE MIR -77 131 41 729 269 88 70 chr5 9633765 9633971 -193451561 - HAL1 LINE L1 -1383 1124 923 228 35 0 0 chr5 9633971 9634000 -193451532 + (TTG)n Simple_repeat Simple_repeat 2 30 0 729 269 88 70 chr5 9634000 9634356 -193451176 - HAL1 LINE L1 -1584 923 545 713 259 40 0 chr5 9634356 9634557 -193450975 - MER3 DNA MER1_type 0 209 1 729 269 88 70 chr5 9634557 9634688 -193450844 - HAL1 LINE L1 -1962 545 418 322 204 13 112 chr5 9634785 9634937 -193450595 - HAL1 LINE L1 -2271 236 100 662 169 12 0 chr5 9635455 9635615 -193449917 + (TCCA)n Simple_repeat Simple_repeat 1 162 0 265 167 0 0 chr5 9637319 9637361 -193448171 - 5S rRNA rRNA -79 42 1 278 167 0 0 chr5 9637409 9637451 -193448081 - 5S rRNA rRNA -79 42 1 278 167 0 0 chr5 9637554 9637596 -193447936 - 5S rRNA rRNA -79 42 1 971 334 85 27 chr5 9640292 9640930 -193444602 + L2 LINE L2 1378 2052 -1262 526 301 51 20 chr5 9641057 9641253 -193444279 + L2 LINE L2 3112 3313 0 2419 65 0 0 chr5 9641496 9641790 -193443742 + AluY SINE Alu 1 294 -17 1120 240 59 57 chr5 9641816 9642204 -193443328 + MLT1B LTR MaLR 2 390 0 211 109 55 55 chr5 9642335 9642390 -193443142 + (TATTG)n Simple_repeat Simple_repeat 3 57 0 1054 270 77 70 chr5 9642454 9642634 -193442898 - Charlie7 DNA MER1_type -1892 720 543 1465 148 13 4 chr5 9642634 9642863 -193442669 - L1PA13 LINE L1 -19 6144 5914 1054 270 77 70 chr5 9642863 9643396 -193442136 - Charlie7 DNA MER1_type -2069 543 2 231 311 95 0 chr5 9643444 9643518 -193442014 + MER5B DNA MER1_type 92 172 -6 1884 176 9 21 chr5 9643592 9643932 -193441600 + MLT2C1 LTR ERVL 1 336 -61 198 0 0 0 chr5 9643937 9643959 -193441573 + (CA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr5 9643959 9643981 -193441551 + (TG)n Simple_repeat Simple_repeat 2 23 0 1579 196 32 0 chr5 9644023 9644303 -193441229 + AluJb SINE Alu 1 289 -23 501 122 20 10 chr5 9644366 9644464 -193441068 + GA-rich Low_complexity Low_complexity 3 101 0 280 366 49 42 chr5 9644558 9644700 -193440832 + L2 LINE L2 3127 3269 -3 7166 71 6 3 chr5 9644818 9646004 -193439528 + L1PA8 LINE L1 4972 6166 -6 1873 185 26 4 chr5 9646011 9646381 -193439151 - L1MA5 LINE L1 -153 6147 5777 250 268 0 0 chr5 9646334 9646390 -193439142 + L1M2 LINE L1 5668 5723 -577 * 279 294 56 37 chr5 9646601 9646798 -193438734 - L1ME LINE L1 -480 5690 5487 226 318 71 18 chr5 9648057 9648227 -193437305 - HAL1 LINE L1 -938 1569 1391 5913 168 15 26 chr5 9648352 9650506 -193435026 - L1PB1 LINE L1 -3 6148 4028 21 36 0 0 chr5 9650842 9650870 -193434662 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr5 9653036 9653064 -193432468 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 398 286 54 58 chr5 9654279 9654520 -193431012 + MIR SINE MIR 23 262 0 265 281 31 70 chr5 9654755 9654883 -193430649 + MER94 DNA DNA 9 131 -3 185 361 114 32 chr5 9655184 9655342 -193430190 + L2 LINE L2 3101 3271 -1 1675 226 20 6 chr5 9657348 9657698 -193427834 - MER4D LTR ERV1 0 903 549 728 152 23 0 chr5 9657728 9657860 -193427672 - MER49 LTR ERV1 -638 285 151 * 1232 176 23 38 chr5 9657859 9658096 -193427436 - MER49 LTR ERV1 -666 257 23 2011 154 0 0 chr5 9658096 9658401 -193427131 - AluSx SINE Alu -7 305 1 1232 176 23 38 chr5 9658401 9658424 -193427108 - MER49 LTR ERV1 -900 23 1 235 231 0 0 chr5 9658683 9658735 -193426797 + A-rich Low_complexity Low_complexity 4 55 0 2055 144 0 3 chr5 9660236 9660535 -193424997 - AluSx SINE Alu -14 298 1 314 249 61 95 chr5 9660570 9660833 -193424699 + MIR SINE MIR 5 262 0 1915 142 45 10 chr5 9662412 9662701 -193422831 + AluSx SINE Alu 1 299 -13 500 317 61 15 chr5 9663638 9663900 -193421632 + MLT2E LTR ERVL 31 304 -324 195 42 0 0 chr5 9664344 9664368 -193421164 + (TG)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chr5 9665553 9665590 -193419942 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr5 9665616 9665637 -193419895 + AT_rich Low_complexity Low_complexity 1 21 0 254 208 51 45 chr5 9665647 9665825 -193419707 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 24 0 0 0 chr5 9665825 9665849 -193419683 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr5 9666013 9666042 -193419490 + AT_rich Low_complexity Low_complexity 1 29 0 677 198 0 0 chr5 9666781 9666907 -193418625 + L1MB4 LINE L1 6038 6163 -17 2082 106 19 13 chr5 9667369 9667680 -193417852 + L1PA13 LINE L1 5847 6159 -4 388 253 163 30 chr5 9668264 9668430 -193417102 + MIR SINE MIR 17 204 -58 336 294 91 16 chr5 9669926 9670113 -193415419 + L3 LINE CR1 1066 1266 -311 416 302 72 29 chr5 9671169 9671546 -193413986 - L1MEd LINE L1 -3443 3097 2705 424 167 0 0 chr5 9671579 9671651 -193413881 + MER116 DNA Mariner 6 77 -3 292 239 71 16 chr5 9671668 9671829 -193413703 - L1MEd LINE L1 -3959 2581 2480 1073 153 36 31 chr5 9671974 9672170 -193413362 + MER3 DNA MER1_type 13 209 0 304 167 0 0 chr5 9672127 9672175 -193413357 - MER3 DNA MER1_type -119 90 43 * 454 287 115 69 chr5 9672358 9673022 -193412510 - L1MEd LINE L1 -833 2068 1137 186 143 0 0 chr5 9673130 9673165 -193412367 + (T)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr5 9673798 9673820 -193411712 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr5 9674574 9674596 -193410936 + AT_rich Low_complexity Low_complexity 1 22 0 379 270 50 0 chr5 9674833 9674933 -193410599 - MIR3 SINE MIR -4 204 100 254 323 38 70 chr5 9675517 9675703 -193409829 - MIR SINE MIR -37 225 46 297 256 185 31 chr5 9675749 9675944 -193409588 + L2 LINE L2 2828 3052 -220 2108 105 0 3 chr5 9677381 9677675 -193407857 + AluSx SINE Alu 1 293 -19 341 260 77 19 chr5 9678449 9678553 -193406979 + MIR SINE MIR 34 143 -119 207 197 13 26 chr5 9679202 9679278 -193406254 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 461 319 24 0 chr5 9679546 9679715 -193405817 - MER63A DNA MER1_type -37 173 1 2406 219 56 26 chr5 9680363 9681016 -193404516 - L1ME1 LINE L1 -5 6230 5553 1975 123 0 38 chr5 9681016 9681333 -193404199 - AluSx SINE Alu -7 305 1 2406 219 56 26 chr5 9681333 9681372 -193404160 - L1ME1 LINE L1 -682 5553 5517 765 248 50 31 chr5 9681451 9681807 -193403725 - L1ME1 LINE L1 -3766 2480 2108 27 0 0 0 chr5 9682491 9682518 -193403014 + AT_rich Low_complexity Low_complexity 1 27 0 4707 54 7 3 chr5 9682518 9683096 -193402436 - L1PA5 LINE L1 -4 6150 5571 1276 270 101 24 chr5 9683388 9683884 -193401648 - MER90 LTR ERV1 0 614 81 231 105 35 53 chr5 9684462 9684519 -193401013 + A-rich Low_complexity Low_complexity 3 58 0 396 264 31 78 chr5 9685184 9685377 -193400155 + MLT1J2 LTR MaLR 267 450 0 266 198 238 8 chr5 9688093 9688219 -193397313 + LTR33A LTR ERVL 318 472 -51 2112 182 33 12 chr5 9689163 9689587 -193395945 + L1MC1 LINE L1 5899 6331 -2 198 174 0 0 chr5 9689802 9689848 -193395684 + (CA)n Simple_repeat Simple_repeat 1 46 0 916 313 103 53 chr5 9689971 9690708 -193394824 - L1M4 LINE L1 -817 5329 4556 21 0 0 0 chr5 9691315 9691336 -193394196 + AT_rich Low_complexity Low_complexity 1 21 0 1223 232 69 12 chr5 9693635 9693954 -193391578 - MER58B DNA MER1_type -4 337 1 451 313 46 26 chr5 9694202 9694397 -193391135 - MIR SINE MIR 0 262 64 307 227 21 0 chr5 9695395 9695492 -193390040 + (CA)n Simple_repeat Simple_repeat 1 99 0 608 208 17 6 chr5 9695518 9695696 -193389836 + (CA)n Simple_repeat Simple_repeat 1 180 0 238 300 29 0 chr5 9695698 9695768 -193389764 + (CACG)n Simple_repeat Simple_repeat 1 72 0 393 250 17 0 chr5 9695768 9695940 -193389592 + (CA)n Simple_repeat Simple_repeat 1 175 0 190 255 21 0 chr5 9695962 9696056 -193389476 + (CA)n Simple_repeat Simple_repeat 1 96 0 1526 209 65 18 chr5 9696527 9696887 -193388645 + MLT2D LTR ERVL 1 424 -40 291 28 0 0 chr5 9696903 9696939 -193388593 + (TG)n Simple_repeat Simple_repeat 2 37 0 209 108 27 0 chr5 9697179 9697216 -193388316 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 653 274 21 11 chr5 9698963 9699149 -193386383 + MIR SINE MIR 65 252 -10 223 255 0 0 chr5 9699745 9699796 -193385736 + A-rich Low_complexity Low_complexity 2 52 0 1792 174 76 0 chr5 9700327 9700643 -193384889 + MSTB LTR MaLR 87 426 0 392 55 103 7 chr5 9700839 9700984 -193384548 + (TA)n Simple_repeat Simple_repeat 1 159 0 540 248 15 7 chr5 9702540 9702677 -193382855 - LTR41 LTR ERVL -618 155 18 437 276 247 17 chr5 9702718 9703062 -193382470 - L2 LINE L2 -71 3242 2820 513 349 0 0 chr5 9703070 9703245 -193382287 + (TG)n Simple_repeat Simple_repeat 1 175 0 972 260 72 16 chr5 9703462 9703766 -193381766 - L2 LINE L2 -512 2802 2482 290 127 18 0 chr5 9705993 9706048 -193379484 - MSTB1 LTR MaLR 0 432 377 339 284 0 23 chr5 9706051 9706139 -193379393 + L1MC4 LINE L1 6614 6699 -1343 1842 182 73 0 chr5 9706139 9706480 -193379052 - MSTB1 LTR MaLR -65 367 2 791 103 0 0 chr5 9706642 9706749 -193378783 + AluSg/x SINE Alu 188 294 -15 620 240 62 5 chr5 9707308 9707500 -193378032 - L1MD3 LINE L1 0 7995 7793 228 149 0 43 chr5 9707526 9707573 -193377959 + MLT1L LTR MaLR 567 611 -4 392 178 122 11 chr5 9708741 9708831 -193376701 - MLT1J LTR MaLR 0 511 412 593 270 22 22 chr5 9709023 9709201 -193376331 - MLT1J LTR MaLR -330 181 4 1138 247 160 15 chr5 9709281 9709682 -193375850 - LTR40b LTR ERVL 0 462 4 761 107 0 8 chr5 9711170 9711292 -193374240 - AluY SINE Alu -13 298 178 464 68 0 0 chr5 9711292 9711351 -193374181 - AluY SINE Alu -50 251 193 2042 28 47 0 chr5 9711351 9711605 -193373927 - AluY SINE Alu -44 267 2 1106 260 27 31 chr5 9711782 9711973 -193373559 + L1M4 LINE L1 2128 2318 -3828 330 67 0 0 chr5 9711973 9712018 -193373514 + (TA)n Simple_repeat Simple_repeat 2 46 0 1488 194 3 3 chr5 9712018 9712311 -193373221 - AluJb SINE Alu -3 309 17 1106 260 27 31 chr5 9712311 9712740 -193372792 + L1M4 LINE L1 2316 2792 -3354 189 154 0 0 chr5 9712955 9712994 -193372538 + (CGA)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr5 9713002 9713030 -193372502 + GC_rich Low_complexity Low_complexity 1 28 0 220 194 28 28 chr5 9713040 9713112 -193372420 + (CGGGG)n Simple_repeat Simple_repeat 5 76 0 203 196 36 0 chr5 9713116 9713172 -193372360 + (CCG)n Simple_repeat Simple_repeat 1 58 0 70 24 0 0 chr5 9713308 9713392 -193372140 + GC_rich Low_complexity Low_complexity 1 84 0 249 33 0 0 chr5 9713416 9713446 -193372086 + (CGG)n Simple_repeat Simple_repeat 1 30 0 214 209 7 61 chr5 9713494 9713642 -193371890 + (CGG)n Simple_repeat Simple_repeat 1 140 0 25 51 0 0 chr5 9713677 9713716 -193371816 + GC_rich Low_complexity Low_complexity 1 39 0 198 0 0 0 chr5 9713798 9713820 -193371712 + (CGG)n Simple_repeat Simple_repeat 3 24 0 225 65 0 0 chr5 9713888 9713919 -193371613 + (CGGGGG)n Simple_repeat Simple_repeat 3 33 0 21 57 0 0 chr5 9714161 9714196 -193371336 + GC_rich Low_complexity Low_complexity 1 35 0 924 256 130 38 chr5 9715353 9715628 -193369904 + L2 LINE L2 2418 2666 -606 2553 106 16 5 chr5 9715628 9715996 -193369536 + L1PA10 LINE L1 5795 6166 -2 924 256 130 38 chr5 9715996 9716293 -193369239 + L2 LINE L2 2666 3034 -238 1570 166 53 111 chr5 9716330 9716818 -193368714 - MLT1C LTR MaLR -4 463 4 231 255 128 60 chr5 9716818 9716967 -193368565 + L2 LINE L2 3152 3310 -3 230 116 0 0 chr5 9717220 9717263 -193368269 + LTR66 LTR ERVL 397 439 -171 1910 142 0 0 chr5 9717300 9717582 -193367950 - AluSx SINE Alu -30 282 1 316 326 67 17 chr5 9717801 9717979 -193367553 + MER5A DNA MER1_type 2 188 -1 1063 220 160 60 chr5 9718043 9718512 -193367020 - MLT1H LTR MaLR -8 541 26 740 223 40 55 chr5 9718511 9718713 -193366819 - MLT1C LTR MaLR -216 251 53 * 338 277 149 76 chr5 9718787 9719116 -193366416 - MLT1J LTR MaLR -50 461 109 348 163 168 0 chr5 9719314 9719394 -193366138 - MLT1C LTR MaLR -295 95 8 388 247 0 0 chr5 9719511 9719592 -193365940 + MER20 DNA MER1_type 5 85 -134 1256 245 29 56 chr5 9720163 9720620 -193364912 - MLT1J2 LTR MaLR -14 429 1 410 260 39 10 chr5 9721344 9721448 -193364084 + MIR SINE MIR 17 123 -139 246 301 173 39 chr5 9722025 9722587 -193362945 - L2 LINE L2 -551 2763 2127 2217 95 3 13 chr5 9723670 9723995 -193361537 - AluSx SINE Alu 0 322 1 1126 176 14 23 chr5 9724047 9724268 -193361264 + AluJo SINE Alu 70 288 -24 286 176 24 24 chr5 9724272 9724357 -193361175 + G-rich Low_complexity Low_complexity 3 87 0 256 59 118 0 chr5 9724350 9724401 -193361131 + GA-rich Low_complexity Low_complexity 1 57 0 * 320 262 155 56 chr5 9724567 9724819 -193360713 - MLT1I LTR MaLR -23 386 110 267 340 19 0 chr5 9726120 9726223 -193359309 + L2 LINE L2 3208 3312 -1 1518 158 82 7 chr5 9727131 9727410 -193358122 + AluJb SINE Alu 1 300 -12 1669 170 20 20 chr5 9728499 9728805 -193356727 + AluJo SINE Alu 1 306 -6 5379 177 22 4 chr5 9729260 9730909 -193354623 + L1PB3 LINE L1 4118 5795 -359 192 96 0 58 chr5 9730909 9730961 -193354571 + (TA)n Simple_repeat Simple_repeat 1 49 0 2423 126 8 13 chr5 9730967 9731341 -193354191 + L1PB3 LINE L1 5782 6153 -1 420 300 90 45 chr5 9731370 9731654 -193353878 + L1ME4a LINE L1 5673 5972 -149 344 320 67 44 chr5 9731836 9732493 -193353039 - L1M4 LINE L1 -1711 4435 3764 1168 257 42 38 chr5 9732771 9733080 -193352452 + L1MEc LINE L1 2120 2426 -3789 330 67 0 0 chr5 9733080 9733125 -193352407 + (TA)n Simple_repeat Simple_repeat 1 45 0 1657 165 3 3 chr5 9733125 9733416 -193352116 - AluJb SINE Alu -3 309 19 1168 257 42 38 chr5 9733416 9734024 -193351508 + L1MEc LINE L1 2426 3030 -3185 2193 124 52 22 chr5 9734024 9734388 -193351144 + THE1C LTR MaLR 1 375 0 1168 257 42 38 chr5 9734388 9734525 -193351007 + L1MEc LINE L1 3030 3183 -3032 2003 126 0 10 chr5 9734525 9734835 -193350697 + AluSg SINE Alu 1 307 -3 1168 257 42 38 chr5 9734835 9734891 -193350641 + L1MEc LINE L1 3183 3237 -2978 735 184 184 14 chr5 9735596 9735808 -193349724 - MER47A DNA MER2_type 0 366 119 540 230 79 0 chr5 9735808 9735960 -193349572 - L1MA4 LINE L1 -53 6247 6084 2159 134 119 0 chr5 9735963 9736350 -193349182 + L1MA4 LINE L1 5606 6038 -262 689 183 15 8 chr5 9736352 9736483 -193349049 - MER47A DNA MER2_type -211 155 24 1510 159 73 14 chr5 9736577 9736866 -193348666 - AluJo SINE Alu -6 306 1 1991 102 16 26 chr5 9738626 9738930 -193346602 - AluSg SINE Alu -9 301 1 442 249 87 22 chr5 9739174 9739403 -193346129 - MER74B LTR ERVL -152 470 227 2117 168 55 2 chr5 9739404 9739808 -193345724 + MSTB LTR MaLR 2 426 0 1584 232 84 9 chr5 9740315 9740742 -193344790 - MER68 LTR ERV1 0 562 104 291 292 184 0 chr5 9740740 9740908 -193344624 - LTR53 LTR ERVL -318 201 3 * 376 238 166 0 chr5 9741891 9742042 -193343490 + MER91A DNA MER1_type 17 192 -4 204 302 35 86 chr5 9742504 9742620 -193342912 + L2 LINE L2 2969 3078 -194 227 215 15 0 chr5 9742733 9742798 -193342734 + (TG)n Simple_repeat Simple_repeat 2 67 0 201 354 122 0 chr5 9743260 9743342 -193342190 - MIR SINE MIR -22 240 149 1643 210 68 23 chr5 9743642 9744081 -193341451 - MLT1C LTR MaLR -1 466 8 231 329 168 7 chr5 9744566 9744715 -193340817 + MIR SINE MIR 12 184 -78 862 279 14 41 chr5 9744960 9745322 -193340210 - L1M4 LINE L1 -417 5761 5410 517 188 70 48 chr5 9745326 9745500 -193340032 + L1MB7 LINE L1 5942 6143 -31 325 261 105 39 chr5 9745941 9746094 -193339438 - LTR23 LTR ERV1 0 437 275 384 191 56 0 chr5 9746782 9746871 -193338661 - L1M4 LINE L1 -803 5343 5250 2269 87 0 13 chr5 9748540 9748849 -193336683 - AluSc SINE Alu -4 305 1 2105 159 0 38 chr5 9749357 9749484 -193336048 + MLT1A1 LTR MaLR 10 140 -225 2236 99 0 0 chr5 9749484 9749786 -193335746 - AluSc SINE Alu -7 302 1 2105 159 0 38 chr5 9749786 9750028 -193335504 + MLT1A1 LTR MaLR 140 365 0 2025 183 30 34 chr5 9750303 9750768 -193334764 + MLT1C LTR MaLR 3 465 -2 505 172 0 11 chr5 9750841 9750928 -193334604 - AluJo SINE Alu -138 174 89 371 220 26 63 chr5 9751497 9751640 -193333892 - L1P3 LINE L1 -369 5785 5645 831 188 27 80 chr5 9751644 9751868 -193333664 - MER20 DNA MER1_type -7 212 1 1736 146 3 17 chr5 9751894 9752219 -193333313 - AluJo SINE Alu 0 312 1 405 332 144 24 chr5 9752219 9752245 -193333287 - L1ME LINE L1 -525 5639 5617 2058 147 129 5 chr5 9752245 9752626 -193332906 + MSTC LTR MaLR 1 428 0 405 332 144 24 chr5 9752626 9752891 -193332641 - L1ME LINE L1 -547 5617 5313 2033 102 3 11 chr5 9753204 9753529 -193332003 - AluSq SINE Alu 0 323 1 549 305 69 24 chr5 9753945 9754191 -193331341 - L1ME LINE L1 -1587 4559 4303 2128 100 30 0 chr5 9754191 9754492 -193331040 + AluSx SINE Alu 1 310 -2 2301 172 66 48 chr5 9754605 9755106 -193330426 + MLT2B2 LTR ERVL 6 515 0 255 333 30 30 chr5 9755635 9755767 -193329765 - MER5A DNA MER1_type -14 175 44 375 154 47 24 chr5 9756248 9756417 -193329115 + (TG)n Simple_repeat Simple_repeat 2 174 0 204 189 33 56 chr5 9756417 9756507 -193329025 + (TATG)n Simple_repeat Simple_repeat 1 88 0 418 136 45 34 chr5 9756507 9756683 -193328849 + (TG)n Simple_repeat Simple_repeat 2 179 0 1860 153 0 0 chr5 9757610 9757938 -193327594 + AluJb SINE Alu 1 328 0 180 0 0 0 chr5 9757938 9757958 -193327574 + (CA)n Simple_repeat Simple_repeat 1 20 0 493 243 90 7 chr5 9757997 9758141 -193327391 - L1MD2 LINE L1 -10 6349 6194 781 257 61 14 chr5 9758265 9758479 -193327053 + MER58A DNA MER1_type 1 224 0 430 296 58 32 chr5 9758481 9758670 -193326862 - MIR3 SINE MIR -3 205 12 392 220 347 0 chr5 9758965 9759115 -193326417 - Charlie8 DNA MER1_type -2146 271 70 769 189 43 49 chr5 9759507 9759692 -193325840 + MER20 DNA MER1_type 36 219 0 432 193 44 44 chr5 9760666 9760801 -193324731 - L1ME4a LINE L1 -5 6116 5982 695 236 154 5 chr5 9760806 9761001 -193324531 + MER58A DNA MER1_type 1 224 0 258 136 0 0 chr5 9761020 9761064 -193324468 + (TG)n Simple_repeat Simple_repeat 1 44 0 225 319 146 21 chr5 9761823 9761967 -193323565 + L2 LINE L2 1283 1444 -1870 1007 196 50 23 chr5 9762449 9762709 -193322823 - L1MB4 LINE L1 0 6180 5914 2146 154 15 62 chr5 9762777 9763243 -193322289 - MER65A LTR ERV1 -1 444 1 192 346 140 37 chr5 9763608 9763822 -193321710 + MIR SINE MIR 8 243 -19 637 256 12 18 chr5 9764521 9764685 -193320847 - MER5B DNA MER1_type -15 163 1 306 228 43 33 chr5 9764733 9764825 -193320707 + MIR3 SINE MIR 116 208 0 952 254 12 75 chr5 9765007 9765168 -193320364 - L1ME3A LINE L1 -53 6117 5947 2535 105 18 37 chr5 9765168 9765326 -193320206 + THE1C LTR MaLR 1 160 -215 2121 113 0 0 chr5 9765326 9765618 -193319914 - AluSx SINE Alu -18 294 3 2535 105 18 37 chr5 9765618 9765841 -193319691 + THE1C LTR MaLR 160 375 0 952 254 12 75 chr5 9765841 9765910 -193319622 - L1ME3A LINE L1 -223 5947 5912 2448 43 3 13 chr5 9765910 9766213 -193319319 - AluY SINE Alu -11 300 1 952 254 12 75 chr5 9766213 9766315 -193319217 - L1ME3A LINE L1 -258 5912 5805 1576 179 113 24 chr5 9766315 9766650 -193318882 + MLT1A1 LTR MaLR 1 365 0 378 138 90 2 chr5 9766657 9766755 -193318777 - L1ME3A LINE L1 -376 5802 5689 311 323 36 52 chr5 9767799 9768157 -193317375 - L3 LINE CR1 -87 1490 1094 242 225 42 33 chr5 9768175 9768295 -193317237 + (CA)n Simple_repeat Simple_repeat 1 121 0 * 247 235 17 43 chr5 9768215 9768330 -193317202 + (CAATA)n Simple_repeat Simple_repeat 5 116 0 210 185 37 19 chr5 9768339 9768447 -193317085 + (CA)n Simple_repeat Simple_repeat 1 110 0 261 270 15 44 chr5 9768933 9769070 -193316462 - L1ME3A LINE L1 0 6170 6038 738 259 145 55 chr5 9769103 9769832 -193315700 - L1MEc LINE L1 -2171 4044 3250 1963 108 7 27 chr5 9769982 9770277 -193315255 - AluSx SINE Alu -23 289 1 644 264 85 59 chr5 9770302 9770947 -193314585 - L1MEc LINE L1 -4872 1524 863 3525 121 11 15 chr5 9772098 9772627 -193312905 + MER1A DNA MER1_type 1 527 0 507 206 219 43 chr5 9772864 9773097 -193312435 - LOR1b LTR ERV1 -109 352 79 1120 206 66 8 chr5 9773124 9773381 -193312151 + MER74A LTR ERVL 250 521 -37 1351 251 29 0 chr5 9773462 9773769 -193311763 + MLT1E2 LTR MaLR 311 626 0 303 93 0 0 chr5 9773774 9773817 -193311715 + (ATG)n Simple_repeat Simple_repeat 2 44 0 2346 116 29 0 chr5 9775702 9776046 -193309486 + L1PB3 LINE L1 5800 6153 -1 668 276 61 0 chr5 9776260 9776574 -193308958 + L2 LINE L2 2779 3114 -199 209 294 124 62 chr5 9776749 9776926 -193308606 + L2 LINE L2 3112 3299 -14 1181 226 66 84 chr5 9777218 9777712 -193307820 + MLT1J LTR MaLR 1 485 -26 767 188 60 0 chr5 9777712 9777861 -193307671 - MER90 LTR ERV1 0 575 418 227 349 122 4 chr5 9778806 9779061 -193306471 - L2 LINE L2 -160 3112 2828 235 292 0 14 chr5 9779260 9779332 -193306200 + MLT1H LTR MaLR 139 209 -340 * 935 132 0 0 chr5 9779321 9779457 -193306075 + MSTA LTR MaLR 293 428 0 21 0 0 0 chr5 9780169 9780190 -193305342 + AT_rich Low_complexity Low_complexity 1 21 0 1790 214 59 0 chr5 9780790 9781196 -193304336 + L1MD3 LINE L1 7547 7976 -19 2077 112 137 3 chr5 9781459 9781781 -193303751 + MLT2A2 LTR ERVL 1 365 -88 1233 102 10 56 chr5 9781783 9781980 -193303552 + THE1B LTR MaLR 177 364 0 1324 194 164 44 chr5 9782055 9782488 -193303044 + MLT1D LTR MaLR 1 485 -20 1046 263 89 9 chr5 9782960 9783298 -193302234 - MLT1A1 LTR MaLR 0 365 1 490 236 73 55 chr5 9783860 9784080 -193301452 - LTR67 LTR ERVL -266 291 68 257 209 0 0 chr5 9784120 9784163 -193301369 + polypurine Low_complexity Low_complexity 3 45 0 2188 94 0 13 chr5 9784207 9784505 -193301027 - AluSq SINE Alu -19 294 1 29 28 0 0 chr5 9785013 9785049 -193300483 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr5 9785276 9785298 -193300234 + AT_rich Low_complexity Low_complexity 1 22 0 2034 133 3 3 chr5 9785579 9785880 -193299652 + AluSx SINE Alu 1 301 -11 24 32 0 0 chr5 9785918 9785949 -193299583 + AT_rich Low_complexity Low_complexity 1 31 0 3040 181 160 96 chr5 9786001 9786289 -193299243 + L1MC3 LINE L1 6714 6982 -803 225 65 0 0 chr5 9786289 9786320 -193299212 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 3040 181 160 96 chr5 9786320 9786376 -193299156 + L1MC3 LINE L1 6982 7033 -752 281 286 0 0 chr5 9786376 9786453 -193299079 + MLT1F1 LTR MaLR 35 111 -456 3040 181 160 96 chr5 9786453 9787021 -193298511 + L1MC3 LINE L1 7033 7766 -19 381 185 60 7 chr5 9787037 9787188 -193298344 + (TA)n Simple_repeat Simple_repeat 1 159 0 203 188 45 8 chr5 9787199 9787332 -193298200 + (TA)n Simple_repeat Simple_repeat 2 139 0 307 320 137 34 chr5 9787502 9787949 -193297583 + L1M4 LINE L1 3716 4208 -1938 1541 144 26 58 chr5 9788439 9788820 -193296712 - L1PA13 LINE L1 -1 6162 5794 21 57 0 0 chr5 9789283 9789318 -193296214 + AT_rich Low_complexity Low_complexity 1 35 0 18937 100 11 31 chr5 9789336 9792091 -193293441 + Charlie3 DNA MER1_type 1 2700 -10 269 267 6 0 chr5 9792166 9792342 -193293190 + (CA)n Simple_repeat Simple_repeat 1 177 0 439 311 0 16 chr5 9792380 9792563 -193292969 + (CA)n Simple_repeat Simple_repeat 1 180 0 312 281 0 0 chr5 9792599 9792777 -193292755 + (CA)n Simple_repeat Simple_repeat 2 179 0 515 260 0 7 chr5 9794048 9794351 -193291181 + (CA)n Simple_repeat Simple_repeat 1 300 0 1072 244 83 77 chr5 9794666 9795162 -193290370 + MLT1F1 LTR MaLR 68 566 -1 1268 147 7 8 chr5 9795473 9795694 -193289838 - MLT2B3 LTR ERVL -195 219 1 1566 233 37 22 chr5 9795698 9796157 -193289375 - MLT1C LTR MaLR -1 466 1 228 275 65 36 chr5 9798367 9798505 -193287027 + L1MC4a LINE L1 5254 5395 -2413 500 251 212 8 chr5 9798621 9798880 -193286652 + L2 LINE L2 2598 2909 -405 226 182 23 0 chr5 9798883 9798927 -193286605 + MLT1G LTR MaLR 1 45 -550 2002 183 39 9 chr5 9798928 9799305 -193286227 + MLT2D LTR ERVL 1 480 -40 243 0 0 0 chr5 9799319 9799346 -193286186 + (TG)n Simple_repeat Simple_repeat 2 28 0 1287 204 31 40 chr5 9799486 9799836 -193285696 + MLT1G LTR MaLR 161 571 0 615 280 69 55 chr5 9799884 9800263 -193285269 + L2 LINE L2 2926 3309 -4 1126 287 30 38 chr5 9800290 9800816 -193284716 + L1MC4a LINE L1 5407 5928 -1880 1279 229 93 41 chr5 9802117 9802557 -193282975 + MLT1C LTR MaLR 1 463 -4 204 214 89 0 chr5 9802590 9802646 -193282886 + L2 LINE L2 3210 3270 -2 326 330 89 10 chr5 9804327 9804530 -193281002 + MIR SINE MIR 16 234 -28 21 36 0 0 chr5 9804758 9804786 -193280746 + AT_rich Low_complexity Low_complexity 1 28 0 1942 105 66 21 chr5 9805664 9805950 -193279582 - AluSq SINE Alu -13 300 2 1610 173 24 64 chr5 9806171 9806546 -193278986 + MLT1A1 LTR MaLR 1 360 -5 2482 61 3 3 chr5 9806729 9807025 -193278507 + AluY SINE Alu 1 296 -15 1163 232 95 34 chr5 9807333 9807585 -193277947 - MLT1C LTR MaLR 0 467 183 2229 109 0 0 chr5 9807585 9807878 -193277654 - AluSc SINE Alu -16 293 1 1163 232 95 34 chr5 9807878 9808005 -193277527 - MLT1C LTR MaLR -284 183 65 2324 102 50 44 chr5 9808143 9808354 -193277178 - THE1B LTR MaLR 0 364 148 2036 114 4 4 chr5 9808354 9808664 -193276868 + AluSc SINE Alu 1 310 0 2324 102 50 44 chr5 9808664 9808813 -193276719 - THE1B LTR MaLR -216 148 1 310 217 98 22 chr5 9809546 9809638 -193275894 - MLT1D LTR MaLR -356 149 51 230 285 156 38 chr5 9810848 9811034 -193274498 + MIR SINE MIR 31 238 -24 628 201 98 24 chr5 9813127 9813291 -193272241 - MER45A DNA AcHobo 0 178 3 5427 106 24 20 chr5 9813583 9813616 -193271916 + L1PA16 LINE L1 5332 5363 -803 1156 59 0 182 chr5 9813616 9813852 -193271680 + 7SK RNA RNA 1 193 0 5427 106 24 20 chr5 9813852 9814649 -193270883 + L1PA16 LINE L1 5363 6165 -1 2262 100 0 10 chr5 9815340 9815649 -193269883 + AluSg SINE Alu 2 307 -3 316 215 88 73 chr5 9815650 9815855 -193269677 + L1M4 LINE L1 3115 3322 -2824 2652 243 43 28 chr5 9815859 9816817 -193268715 + L1M4 LINE L1 3575 4546 -1600 887 97 0 0 chr5 9816822 9816935 -193268597 - AluSq SINE Alu -48 265 153 607 256 6 0 chr5 9816942 9817098 -193268434 + L1M4 LINE L1 4563 4719 -1427 360 0 0 0 chr5 9817165 9817205 -193268327 + (TG)n Simple_repeat Simple_repeat 1 40 0 868 166 7 0 chr5 9817208 9817347 -193268185 - FLAM_C SINE Alu -3 140 1 25 0 0 0 chr5 9818128 9818153 -193267379 + AT_rich Low_complexity Low_complexity 1 25 0 1797 127 67 0 chr5 9818253 9818520 -193267012 - AluSq SINE Alu -28 285 1 244 215 83 42 chr5 9818863 9819007 -193266525 + L1M4 LINE L1 5189 5338 -808 903 85 0 0 chr5 9819302 9819420 -193266112 - AluY SINE Alu -21 290 173 387 0 0 0 chr5 9819476 9819519 -193266013 + (CA)n Simple_repeat Simple_repeat 2 44 0 2536 186 35 2 chr5 9819538 9820027 -193265505 - MLT1D LTR MaLR 0 505 1 180 0 0 0 chr5 9820102 9820122 -193265410 + (TC)n Simple_repeat Simple_repeat 1 20 0 21 104 0 0 chr5 9820136 9820213 -193265319 + AT_rich Low_complexity Low_complexity 1 77 0 456 294 0 27 chr5 9820328 9820512 -193265020 + (TG)n Simple_repeat Simple_repeat 2 180 0 186 261 0 0 chr5 9822002 9822048 -193263484 + L2 LINE L2 3015 3060 -253 224 156 0 0 chr5 9822754 9822799 -193262733 + L2 LINE L2 3018 3062 -210 1762 71 0 0 chr5 9823337 9823548 -193261984 - AluSg/x SINE Alu -25 287 77 1963 131 103 25 chr5 9823675 9824042 -193261490 + MLT2C1 LTR ERVL 2 397 0 710 141 43 12 chr5 9826106 9826418 -193259114 + (CA)n Simple_repeat Simple_repeat 1 321 0 1487 190 65 50 chr5 9826424 9826808 -193258724 + MLT1B LTR MaLR 1 390 0 1913 289 52 72 chr5 9826817 9827792 -193257740 - ERVL LTR ERVL -2955 2809 1854 398 292 39 8 chr5 9827822 9827952 -193257580 + L2 LINE L2 3138 3271 -1 1280 215 134 6 chr5 9828576 9828911 -193256621 - L1MD3 LINE L1 -13 7982 7605 1386 222 57 40 chr5 9829281 9829651 -193255881 - MLT2B3 LTR ERVL -4 550 175 313 259 65 0 chr5 9829657 9829765 -193255767 - MLT1J2 LTR MaLR -313 137 23 180 240 87 87 chr5 9830642 9830746 -193254786 + L2 LINE L2 2729 2832 -482 614 241 143 52 chr5 9831064 9831424 -193254108 - MLT1J2 LTR MaLR -1 445 41 1180 275 142 53 chr5 9831512 9832133 -193253399 - MER50 LTR ERV1 -58 676 1 257 262 71 24 chr5 9833145 9833229 -193252303 + MER91B DNA MER1_type 44 131 -59 292 321 12 0 chr5 9833242 9833326 -193252206 + MER91B DNA MER1_type 93 177 -13 4237 129 41 124 chr5 9833732 9834776 -193250756 - L1MC2 LINE L1 -11 6333 5377 2067 108 3 0 chr5 9835523 9835830 -193249702 + AluSx SINE Alu 1 312 0 208 358 42 0 chr5 9835974 9836069 -193249463 + L3 LINE CR1 1459 1557 -20 1870 136 3 3 chr5 9836260 9836554 -193248978 - L1PB1 LINE L1 -1 6150 5857 3957 118 21 4 chr5 9836554 9837279 -193248253 + L1PB1 LINE L1 5117 5853 -298 320 309 73 0 chr5 9837443 9837553 -193247979 + L2 LINE L2 3155 3272 0 224 319 43 76 chr5 9840389 9840574 -193244958 + L3 LINE CR1 597 775 -802 30 45 0 0 chr5 9841420 9841464 -193244068 + AT_rich Low_complexity Low_complexity 1 44 0 2311 61 7 3 chr5 9841652 9841946 -193243586 + AluY SINE Alu 1 295 -16 826 235 90 45 chr5 9842720 9843103 -193242429 - MLT1C LTR MaLR -1 466 12 1755 167 0 3 chr5 9843395 9843688 -193241844 + AluJb SINE Alu 1 292 -20 263 250 114 0 chr5 9844136 9844214 -193241318 + MIR3 SINE MIR 110 200 -8 2245 104 0 0 chr5 9844214 9844523 -193241009 - AluSx SINE Alu -3 309 1 239 282 220 22 chr5 9845974 9846247 -193239285 - L2 LINE L2 -342 2972 2646 2222 110 0 0 chr5 9846268 9846578 -193238954 + AluSx SINE Alu 1 310 -2 852 152 0 0 chr5 9846714 9846846 -193238686 - AluSq/x SINE Alu -180 132 1 1695 147 109 32 chr5 9847013 9847361 -193238171 + THE1C LTR MaLR 1 375 0 300 354 31 36 chr5 9848467 9848659 -193236873 - HAL1b LINE L1 -1052 296 106 2478 44 0 0 chr5 9848692 9848987 -193236545 + AluY SINE Alu 1 295 -16 1733 129 42 18 chr5 9848989 9849275 -193236257 - AluJo SINE Alu -19 293 1 431 133 0 0 chr5 9849367 9849427 -193236105 + 5S rRNA rRNA 31 90 -31 2044 135 0 0 chr5 9849759 9850062 -193235470 - AluSx SINE Alu -9 303 1 403 314 128 33 chr5 9851047 9851468 -193234064 - L1MEd LINE L1 -5198 921 461 240 345 73 0 chr5 9851471 9851636 -193233896 - L1MEd LINE L1 -5939 180 4 1696 151 4 0 chr5 9853371 9853636 -193231896 + AluSx SINE Alu 1 266 -46 246 32 0 0 chr5 9853650 9853681 -193231851 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1981 120 7 14 chr5 9853755 9854047 -193231485 + AluSx SINE Alu 2 291 -21 1854 135 10 13 chr5 9855215 9855519 -193230013 - AluJb SINE Alu -9 303 1 1403 187 73 0 chr5 9856440 9856592 -193228940 - AluJo SINE Alu -19 293 154 207 0 0 0 chr5 9856592 9856615 -193228917 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1403 187 73 0 chr5 9856615 9856735 -193228797 - AluJo SINE Alu -158 154 1 407 232 21 0 chr5 9857046 9857141 -193228391 - MIR SINE MIR -98 164 68 849 40 0 151 chr5 9857235 9857533 -193227999 + L1PA3 LINE L1 5891 6143 -12 346 266 65 16 chr5 9857650 9857774 -193227758 - L1 LINE L1 -2945 3201 3072 242 194 28 28 chr5 9857834 9857906 -193227626 + (CCCCG)n Simple_repeat Simple_repeat 5 76 0 21 36 0 0 chr5 9857916 9857944 -193227588 + GC_rich Low_complexity Low_complexity 1 28 0 180 158 0 0 chr5 9857952 9857990 -193227542 + (TCG)n Simple_repeat Simple_repeat 2 39 0 31 0 0 0 chr5 9858053 9858084 -193227448 + GC_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr5 9858137 9858168 -193227364 + GC_rich Low_complexity Low_complexity 1 31 0 29 28 0 0 chr5 9858279 9858315 -193227217 + GC_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr5 9858362 9858396 -193227136 + GC_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr5 9858789 9858819 -193226713 + AT_rich Low_complexity Low_complexity 1 30 0 1423 228 102 28 chr5 9863443 9863966 -193221566 - MLT1E3 LTR MaLR 0 624 18 807 97 0 0 chr5 9864219 9864379 -193221153 + AluSc SINE Alu 168 327 0 198 0 0 0 chr5 9866204 9866226 -193219306 + (T)n Simple_repeat Simple_repeat 1 22 0 957 159 53 0 chr5 9866502 9866672 -193218860 + MER3 DNA MER1_type 1 179 -30 259 326 47 29 chr5 9867046 9867218 -193218314 - MIR SINE MIR -17 245 71 180 286 57 14 chr5 9867738 9867808 -193217724 - MIR SINE MIR -118 144 72 343 296 11 0 chr5 9868552 9868640 -193216892 - MIR SINE MIR -161 101 13 2221 104 0 0 chr5 9868698 9869005 -193216527 + AluY SINE Alu 1 307 -4 262 330 11 11 chr5 9869777 9869871 -193215661 - MIR SINE MIR -4 258 165 196 308 49 56 chr5 9871209 9871352 -193214180 + L2 LINE L2 2921 3062 -251 308 247 12 35 chr5 9871946 9872031 -193213501 - MER117 DNA MER1_type -60 137 55 270 109 18 18 chr5 9872483 9872538 -193212994 - L1ME4a LINE L1 -10 6111 6057 262 276 29 48 chr5 9872855 9872960 -193212572 + MIR SINE MIR 82 184 -78 180 0 0 0 chr5 9874413 9874433 -193211099 + (A)n Simple_repeat Simple_repeat 1 20 0 826 186 12 12 chr5 9875201 9875362 -193210170 - FRAM SINE Alu -5 161 1 196 314 14 43 chr5 9877716 9877786 -193207746 - L2 LINE L2 -10 3303 3236 2243 115 0 16 chr5 9879406 9879719 -193205813 - AluSc SINE Alu -1 308 1 470 281 22 14 chr5 9884484 9884623 -193200909 - MIR SINE MIR -35 227 88 207 250 42 94 chr5 9887138 9887234 -193198298 + MER5A DNA MER1_type 92 182 -7 427 246 108 0 chr5 9889055 9889222 -193196310 + MER3 DNA MER1_type 3 187 -22 207 292 31 62 chr5 9890871 9890967 -193194565 - L2 LINE L2 -1 3271 3179 1506 168 70 16 chr5 9893555 9893924 -193191608 - Charlie5 DNA MER1_type 0 2624 2236 26 50 0 0 chr5 9894522 9894562 -193190970 + AT_rich Low_complexity Low_complexity 1 40 0 2138 145 0 3 chr5 9897914 9898217 -193187315 - AluSx SINE Alu -10 302 1 24 0 0 0 chr5 9900408 9900432 -193185100 + AT_rich Low_complexity Low_complexity 1 24 0 1296 138 0 0 chr5 9900991 9901172 -193184360 + AluSg/x SINE Alu 120 300 -12 2095 113 3 0 chr5 9901452 9901754 -193183778 - AluSx SINE Alu 0 303 1 239 306 74 19 chr5 9903567 9903675 -193181857 - MIR3 SINE MIR -14 194 81 363 221 102 31 chr5 9904441 9904568 -193180964 + MIR SINE MIR 27 162 -46 229 245 0 0 chr5 9904915 9904964 -193180568 + MLT1L LTR MaLR 4 52 -563 525 133 37 3 chr5 9904967 9905103 -193180429 + MER53 DNA DNA 1 184 -5 372 306 137 32 chr5 9905229 9905477 -193180055 + MLT1J LTR MaLR 238 511 0 556 259 57 31 chr5 9906217 9906410 -193179122 - MER5C DNA MER1_type -3 321 124 243 293 60 26 chr5 9906732 9906848 -193178684 - MER5B DNA MER1_type -58 120 1 21 0 0 0 chr5 9907003 9907024 -193178508 + AT_rich Low_complexity Low_complexity 1 21 0 1193 40 14 0 chr5 9912007 9912155 -193173377 + L1PA2 LINE L1 6006 6155 0 566 219 5 110 chr5 9912313 9912370 -193173162 + L1M4 LINE L1 3294 3355 -2791 1537 133 12 40 chr5 9912370 9912618 -193172914 - AluJo SINE Alu -14 298 58 566 219 5 110 chr5 9912618 9912779 -193172753 + L1M4 LINE L1 3355 3489 -2657 19417 123 35 27 chr5 9912907 9916381 -193169151 + L1P LINE L1 12 3513 -2633 4508 74 0 0 chr5 9916381 9916947 -193168585 + L1PA7 LINE L1 5586 6152 -2 537 253 6 77 chr5 9917014 9917138 -193168394 + L1ME1 LINE L1 5993 6102 -64 2462 70 3 0 chr5 9917138 9917436 -193168096 - AluSp SINE Alu -14 299 1 537 253 6 77 chr5 9917436 9917493 -193168039 + L1ME1 LINE L1 6102 6161 -5 4812 205 82 10 chr5 9918823 9919204 -193166328 + Cheshire DNA MER1_type 532 884 -1536 1767 171 51 3 chr5 9919204 9919496 -193166036 + AluJb SINE Alu 1 306 -6 4812 205 82 10 chr5 9919496 9920845 -193164687 + Cheshire DNA MER1_type 884 2415 -5 683 134 79 31 chr5 9922139 9922266 -193163266 + FLAM_C SINE Alu 1 133 0 216 290 197 2 chr5 9922561 9922683 -193162849 - MIR SINE MIR -62 146 9 297 250 138 20 chr5 9922801 9922997 -193162535 + L1ME4a LINE L1 5881 6099 -22 999 219 90 68 chr5 9924157 9924477 -193161055 + MER93b LTR ERV1 1 331 -42 1739 124 98 0 chr5 9924477 9924742 -193160790 - AluSq SINE Alu -22 291 1 999 219 90 68 chr5 9924742 9924786 -193160746 + MER93b LTR ERV1 331 373 0 217 198 77 121 chr5 9925982 9926073 -193159459 + L2 LINE L2 3186 3272 0 307 344 118 24 chr5 9927164 9927376 -193158156 - MIR SINE MIR -16 246 15 246 204 0 0 chr5 9927807 9927851 -193157681 - MIR SINE MIR -147 115 72 1198 132 0 16 chr5 9928416 9928624 -193156908 - AluSg/x SINE Alu 0 338 134 2115 68 4 4 chr5 9931684 9931989 -193153543 - AluY SINE Alu 0 305 1 1391 129 0 0 chr5 9932286 9932495 -193153037 + AluSg/x SINE Alu 89 297 -13 1541 173 80 26 chr5 9932785 9933137 -193152395 - THE1C LTR MaLR 0 375 5 1858 147 0 7 chr5 9933748 9934041 -193151491 - AluJb SINE Alu -21 291 1 1678 167 17 0 chr5 9934449 9934736 -193150796 - AluSq SINE Alu -21 292 1 309 130 0 0 chr5 9935046 9935092 -193150440 - FLAM SINE Alu -7 126 81 1408 152 110 15 chr5 9936157 9936421 -193149111 + AluSx SINE Alu 5 293 -19 31 0 0 0 chr5 9936453 9936484 -193149048 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr5 9936664 9936693 -193148839 + AT_rich Low_complexity Low_complexity 1 29 0 404 319 105 26 chr5 9938524 9938790 -193146742 + L3 LINE CR1 626 912 -665 201 74 0 0 chr5 9939739 9939766 -193145766 + (T)n Simple_repeat Simple_repeat 1 27 0 637 255 30 81 chr5 9939874 9939930 -193145602 - MIR SINE MIR 0 262 205 2336 88 3 0 chr5 9939930 9940238 -193145294 - AluSp SINE Alu -4 309 1 637 255 30 81 chr5 9940238 9940416 -193145116 - MIR SINE MIR -57 205 40 2433 57 0 0 chr5 9941038 9941337 -193144195 - AluY SINE Alu -12 299 1 258 32 0 0 chr5 9941431 9941462 -193144070 + (TTA)n Simple_repeat Simple_repeat 1 31 0 199 286 143 0 chr5 9941486 9941556 -193143976 + MIR SINE MIR 7 86 -176 23 33 0 0 chr5 9945742 9945772 -193139760 + AT_rich Low_complexity Low_complexity 1 30 0 3323 203 20 16 chr5 9946131 9946865 -193138667 - L1MB3 LINE L1 -10 6173 5437 195 171 0 29 chr5 9947925 9947960 -193137572 - MIR SINE MIR -142 66 33 2322 81 10 0 chr5 9948747 9949055 -193136477 - AluSx SINE Alu -1 311 1 917 248 22 47 chr5 9950703 9951025 -193134507 - L1MB7 LINE L1 -10 6174 5861 22 0 0 0 chr5 9951404 9951426 -193134106 + AT_rich Low_complexity Low_complexity 1 22 0 2071 99 27 10 chr5 9952169 9952463 -193133069 - AluSx SINE Alu -13 299 1 1635 160 0 45 chr5 9952492 9952804 -193132728 + AluJb SINE Alu 1 298 -14 216 300 171 33 chr5 9953290 9953500 -193132032 - L3 LINE CR1 -912 665 427 227 273 45 0 chr5 9954065 9954131 -193131401 - Charlie5 DNA MER1_type -2543 69 1 209 346 39 0 chr5 9954740 9954818 -193130714 + MIR SINE MIR 59 139 -123 183 240 60 0 chr5 9955940 9955990 -193129542 - L3 LINE CR1 -1169 408 356 2429 43 0 7 chr5 9956285 9956586 -193128946 + AluY SINE Alu 1 299 -12 1760 132 11 0 chr5 9956904 9957169 -193128363 + AluSg SINE Alu 28 295 -15 2413 69 3 0 chr5 9959156 9959460 -193126072 - AluY SINE Alu -6 305 1 276 342 37 19 chr5 9960860 9961021 -193124511 - MIR SINE MIR -41 221 58 23 0 0 0 chr5 9963310 9963333 -193122199 + AT_rich Low_complexity Low_complexity 1 23 0 1956 270 124 21 chr5 9963873 9964829 -193120703 - L1MC4 LINE L1 -52 7990 6936 589 282 108 35 chr5 9964919 9965291 -193120241 + HAL1 LINE L1 578 976 -1531 245 289 138 36 chr5 9965711 9966016 -193119516 + L1MC4a LINE L1 5688 6023 -1785 1574 202 136 0 chr5 9966069 9966436 -193119096 - MER47B DNA MER2_type 0 418 2 312 217 79 21 chr5 9966744 9966895 -193118637 + MLT1F LTR MaLR 24 189 -378 2373 204 78 2 chr5 9966911 9967425 -193118107 - MER68 LTR ERV1 0 562 10 439 226 0 39 chr5 9967467 9967569 -193117963 + MLT1F LTR MaLR 314 411 -182 2383 128 0 0 chr5 9967619 9967954 -193117578 - THE1B LTR MaLR 0 364 30 4766 132 69 55 chr5 9967973 9968859 -193116673 - MER49 LTR ERV1 -25 898 1 618 194 45 8 chr5 9968859 9968992 -193116540 + MLT1F LTR MaLR 405 542 0 602 230 11 79 chr5 9968992 9969131 -193116401 + MIR SINE MIR 69 195 -67 4309 71 54 2 chr5 9969131 9969709 -193115823 + LTR14B LTR ERVK 1 608 0 602 230 11 79 chr5 9969709 9969747 -193115785 + MIR SINE MIR 195 234 -28 748 223 127 75 chr5 9970622 9970968 -193114564 - LTR16A LTR ERVL -2 448 85 2379 55 0 23 chr5 9971158 9971468 -193114064 + AluY SINE Alu 1 303 -8 510 296 102 39 chr5 9973128 9973166 -193112366 - L1MC4a LINE L1 -1842 5966 5932 1901 141 10 0 chr5 9973166 9973457 -193112075 - AluSx SINE Alu -18 294 1 510 296 102 39 chr5 9973457 9973780 -193111752 - L1MC4a LINE L1 -1876 5932 5582 456 275 85 106 chr5 9973852 9975128 -193110404 + L1M2 LINE L1 1595 4189 -2659 317 330 77 84 chr5 9975194 9975727 -193109805 + L1M4 LINE L1 3956 4484 -2364 272 252 16 32 chr5 9975906 9976029 -193109503 + L1M4 LINE L1 4630 4750 -2098 833 133 15 30 chr5 9976050 9976185 -193109347 - AluSq/x SINE Alu -179 134 2 337 282 77 29 chr5 9976400 9976570 -193108962 + L1M4 LINE L1 5906 6083 -765 315 176 305 53 chr5 9977199 9977330 -193108202 + L2 LINE L2 3147 3310 -3 1293 213 168 22 chr5 9978860 9979264 -193106268 - MLT1C LTR MaLR 0 467 5 207 224 41 0 chr5 9979900 9979949 -193105583 + CT-rich Low_complexity Low_complexity 3 53 0 22 35 0 0 chr5 9981043 9981072 -193104460 + GC_rich Low_complexity Low_complexity 1 29 0 241 256 124 41 chr5 9982451 9982572 -193102960 + MIR3 SINE MIR 74 204 -4 1616 188 161 49 chr5 9982581 9982766 -193102766 + LTR44 LTR ERV1 1 164 -355 775 224 18 12 chr5 9982766 9982931 -193102601 - FRAM SINE Alu 0 166 1 1616 188 161 49 chr5 9982931 9983212 -193102320 + LTR44 LTR ERV1 164 519 0 328 310 123 7 chr5 9983498 9983653 -193101879 + L1MC4a LINE L1 5265 5437 -727 668 303 100 20 chr5 9983678 9984028 -193101504 + L1MC4a LINE L1 5517 5894 -1914 2185 141 33 33 chr5 9984627 9984989 -193100543 + THE1B LTR MaLR 3 364 0 1060 188 0 11 chr5 9986763 9986949 -193098583 - AluJb SINE Alu -10 302 119 1695 191 13 34 chr5 9986953 9987323 -193098209 + MLT2C1 LTR ERVL 9 534 -20 190 0 67 0 chr5 9987442 9987472 -193098060 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 2566 65 10 0 chr5 9988211 9988519 -193097013 - AluY SINE Alu 0 311 1 2396 97 0 3 chr5 9988521 9988821 -193096711 - AluSg SINE Alu -11 299 1 538 241 82 55 chr5 9989022 9989279 -193096253 - LTR37B LTR ERV1 -64 404 141 540 219 48 37 chr5 9989991 9990178 -193095354 + MER53 DNA DNA 1 189 0 371 232 18 9 chr5 9990406 9990518 -193095014 - MER89 LTR ERV1 0 559 447 634 192 41 7 chr5 9990892 9991038 -193094494 + MER20 DNA MER1_type 3 153 -66 509 236 76 55 chr5 9991486 9991761 -193093771 - MLT2F LTR ERVL -149 514 234 240 299 39 24 chr5 9991795 9991922 -193093610 - MLT2F LTR ERVL -533 130 2 479 111 0 67 chr5 9992181 9992271 -193093261 + FLAM_C SINE Alu 60 143 0 401 210 5 38 chr5 9992358 9992544 -193092988 + CT-rich Low_complexity Low_complexity 1 180 0 372 315 0 0 chr5 9993044 9993206 -193092326 + A-rich Low_complexity Low_complexity 1 162 0 429 110 37 0 chr5 9993344 9993426 -193092106 + CT-rich Low_complexity Low_complexity 4 88 0 21 57 0 0 chr5 9994120 9994155 -193091377 + AT_rich Low_complexity Low_complexity 1 35 0 377 68 14 7 chr5 9994161 9994233 -193091299 - MLT2A1 LTR ERVL 0 453 400 181 160 20 20 chr5 9994251 9994301 -193091231 + (TA)n Simple_repeat Simple_repeat 2 51 0 2935 78 5 5 chr5 9994374 9994772 -193090760 - MLT2A1 LTR ERVL -44 400 3 369 252 0 27 chr5 9994831 9994942 -193090590 - L1MC5 LINE L1 -48 7913 7806 243 0 0 0 chr5 9994961 9994988 -193090544 + (CA)n Simple_repeat Simple_repeat 1 27 0 232 279 35 35 chr5 9995204 9995290 -193090242 + L2 LINE L2 3136 3221 -51 403 229 221 0 chr5 9995500 9995640 -193089892 - MER5B DNA MER1_type -1 177 7 616 252 157 34 chr5 9996092 9996597 -193088935 + MLT1E2 LTR MaLR 1 574 -52 288 0 0 0 chr5 9996625 9996657 -193088875 + (TA)n Simple_repeat Simple_repeat 1 32 0 198 0 0 0 chr5 9996656 9996678 -193088854 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 1631 179 26 47 chr5 9996678 9996710 -193088822 - L1MB4 LINE L1 -17 6163 6132 2133 109 0 45 chr5 9996710 9997021 -193088511 - AluSx SINE Alu -13 299 3 1631 179 26 47 chr5 9997021 9997373 -193088159 - L1MB4 LINE L1 -48 6132 5787 254 254 45 0 chr5 9997597 9997664 -193087868 - MIR SINE MIR -104 158 89 1241 81 192 0 chr5 9998073 9998307 -193087225 - L1MA7 LINE L1 0 6291 6013 528 225 47 30 chr5 9998781 9998950 -193086582 - MER5B DNA MER1_type -6 172 1 793 305 105 35 chr5 9999107 9999710 -193085822 + L1ME3A LINE L1 3613 4172 -1974 2292 96 10 0 chr5 9999710 10000002 -193085530 + AluY SINE Alu 1 295 -16 793 305 105 35 chr5 10000002 10000742 -193084790 + L1ME3A LINE L1 4172 5093 -1053 1368 256 73 16 chr5 10000828 10001469 -193084063 + L1ME3A LINE L1 5262 5939 -231 * 4193 182 32 78 chr5 10001467 10001661 -193083871 - L1MB1 LINE L1 -5 6163 5962 2374 128 81 2 chr5 10001661 10002058 -193083474 - MSTC LTR MaLR 0 428 1 4193 182 32 78 chr5 10002058 10002961 -193082571 - L1MB1 LINE L1 -206 5962 5019 1100 95 0 0 chr5 10002961 10003098 -193082434 - AluSc SINE Alu -45 264 128 4193 182 32 78 chr5 10003098 10003695 -193081837 - L1MB1 LINE L1 -1149 5019 4396 2533 69 0 0 chr5 10003695 10003998 -193081534 - AluY SINE Alu -8 303 1 4193 182 32 78 chr5 10003998 10004187 -193081345 - L1MB1 LINE L1 -1772 4396 4259 180 0 0 0 chr5 10004187 10004207 -193081325 + (TG)n Simple_repeat Simple_repeat 1 20 0 4193 182 32 78 chr5 10004207 10004332 -193081200 - L1MB1 LINE L1 -1909 4259 4130 798 227 23 6 chr5 10005909 10006081 -193079451 - MLT1A2 LTR MaLR -184 346 172 698 269 45 25 chr5 10006535 10006983 -193078549 - MER76 LTR ERV -167 521 1 1031 319 92 67 chr5 10008267 10008350 -193077182 + L1M4 LINE L1 2160 2239 -3907 1406 197 100 4 chr5 10008350 10008619 -193076913 + AluJo SINE Alu 1 295 -17 1031 319 92 67 chr5 10008619 10009477 -193076055 + L1M4 LINE L1 2239 3130 -3016 2520 64 3 0 chr5 10009477 10009775 -193075757 - AluY SINE Alu -12 299 1 1031 319 92 67 chr5 10009775 10009824 -193075708 + L1M4 LINE L1 3130 3176 -2970 319 282 77 29 chr5 10011077 10011247 -193074285 - L1M4 LINE L1 -765 5381 5204 2126 134 3 0 chr5 10011461 10011759 -193073773 + AluSq SINE Alu 1 299 -14 2908 182 32 13 chr5 10011768 10012389 -193073143 + L1MB8 LINE L1 5511 6143 -35 236 320 124 0 chr5 10012809 10012906 -193072626 + MIR3 SINE MIR 6 114 -94 2277 106 25 17 chr5 10013471 10013829 -193071703 - THE1C LTR MaLR -2 373 13 2038 92 0 32 chr5 10014886 10015167 -193070365 + AluSx SINE Alu 34 305 -7 504 254 294 13 chr5 10015167 10015535 -193069997 - L2 LINE L2 -1733 1581 1103 336 269 11 0 chr5 10015655 10015748 -193069784 - MER5A DNA MER1_type -83 106 13 1097 273 39 3 chr5 10015978 10016333 -193069199 + MER87 LTR ERV1 174 541 0 259 307 144 20 chr5 10016336 10016538 -193068994 - L2 LINE L2 -2833 481 255 1097 269 70 14 chr5 10017045 10017476 -193068056 - MLT1C LTR MaLR 0 467 13 348 24 0 0 chr5 10017958 10017999 -193067533 + (TG)n Simple_repeat Simple_repeat 2 42 0 890 220 6 0 chr5 10018031 10018213 -193067319 - MLT1A2 LTR MaLR -187 187 5 334 224 0 0 chr5 10019517 10019584 -193065948 + MER20 DNA MER1_type 1 67 -152 2058 191 20 54 chr5 10019609 10019722 -193065810 - L1MB5 LINE L1 0 6174 6059 2364 84 11 0 chr5 10019722 10020009 -193065523 - AluSq SINE Alu -21 292 3 2058 191 20 54 chr5 10020009 10020391 -193065141 - L1MB5 LINE L1 -115 6059 5696 892 183 18 0 chr5 10020398 10020562 -193064970 + MER20 DNA MER1_type 50 216 -3 928 285 171 34 chr5 10020666 10021350 -193064182 + L2 LINE L2 2499 3313 0 1081 109 16 0 chr5 10022507 10022837 -193062695 + (TCCA)n Simple_repeat Simple_repeat 2 513 0 377 319 35 0 chr5 10022849 10022962 -193062570 - L2 LINE L2 -1 3312 3196 361 323 93 0 chr5 10022960 10023121 -193062411 - MIR3 SINE MIR -13 195 20 * 2145 148 32 53 chr5 10023286 10023718 -193061814 - Tigger2a DNA MER2_type -11 423 1 973 214 15 9 chr5 10023784 10024074 -193061458 - MLT2B1 LTR ERVL -164 250 1 2323 102 23 3 chr5 10024435 10024739 -193060793 - AluSx SINE Alu -2 310 1 436 267 125 46 chr5 10026667 10026907 -193058625 + L1MB3 LINE L1 4399 4657 -1489 615 341 41 45 chr5 10027245 10027568 -193057964 + L1MB3 LINE L1 5215 5540 -940 206 61 0 30 chr5 10027568 10027601 -193057931 + (TGGGGG)n Simple_repeat Simple_repeat 4 35 0 615 341 41 45 chr5 10027601 10027775 -193057757 + L1MB3 LINE L1 5540 5713 -767 485 207 17 9 chr5 10027827 10027943 -193057589 + MLT2C1 LTR ERVL 1 117 -280 2627 161 21 2 chr5 10027943 10028415 -193057117 - MER41B LTR ERV1 0 635 155 2458 85 3 0 chr5 10028466 10028771 -193056761 - AluSp SINE Alu -7 306 1 613 193 14 0 chr5 10030396 10030541 -193054991 + GA-rich Low_complexity Low_complexity 3 149 0 1001 105 15 90 chr5 10031268 10031365 -193054167 - MER2 DNA MER2_type -160 185 109 1815 166 14 3 chr5 10031365 10031654 -193053878 - AluJb SINE Alu -20 292 1 1001 105 15 90 chr5 10031654 10031756 -193053776 - MER2 DNA MER2_type -236 109 1 830 321 118 0 chr5 10031794 10032143 -193053389 + MLT1J LTR MaLR 1 390 -121 24 0 0 0 chr5 10034411 10034435 -193051097 + AT_rich Low_complexity Low_complexity 1 24 0 1552 32 0 11 chr5 10034475 10034663 -193050869 - L1PA4 LINE L1 -1 6154 5969 483 182 71 14 chr5 10035264 10035428 -193050104 - MLT2C2 LTR ERVL 0 414 202 1490 170 58 21 chr5 10035490 10035820 -193049712 - MLT2C2 LTR ERVL -122 342 1 280 318 11 0 chr5 10035886 10035974 -193049558 + MIR SINE MIR 94 182 -80 459 296 121 19 chr5 10037181 10037387 -193048145 - L3 LINE CR1 -11 1566 1340 2796 35 0 0 chr5 10037387 10037699 -193047833 - AluYb8 SINE Alu -1 317 6 1108 191 18 0 chr5 10038101 10038326 -193047206 + L1MB3 LINE L1 5744 5972 -211 662 226 0 7 chr5 10038328 10038474 -193047058 + L1MB3 LINE L1 6036 6180 -3 880 225 96 51 chr5 10038947 10039302 -193046230 + MLT1A2 LTR MaLR 4 374 0 235 301 55 33 chr5 10040161 10040344 -193045188 - L1MEd LINE L1 -5903 216 30 480 350 10 10 chr5 10040585 10040779 -193044753 - L3 LINE CR1 -729 848 655 311 366 77 11 chr5 10040920 10041103 -193044429 - L3 LINE CR1 -988 589 395 957 172 6 0 chr5 10042406 10042580 -193042952 - MER53 DNA DNA -13 176 2 1476 236 31 74 chr5 10043089 10043644 -193041888 + MER65B LTR ERV1 1 531 0 2324 98 46 52 chr5 10043908 10044274 -193041258 + THE1B LTR MaLR 1 364 0 816 234 49 16 chr5 10044772 10045016 -193040516 + MER34 LTR ERV1 34 285 -257 1162 218 99 92 chr5 10045016 10045831 -193039701 + MER65B-int LTR ERV1 725 2490 -2381 1567 85 9 9 chr5 10045831 10046055 -193039477 - L1PA10 LINE L1 -1 6167 5944 369 0 0 0 chr5 10046235 10046276 -193039256 + (TA)n Simple_repeat Simple_repeat 2 42 0 2375 108 0 0 chr5 10046276 10046581 -193038951 - AluSq SINE Alu -8 305 1 259 170 30 156 chr5 10046608 10046743 -193038789 + MER65B-int LTR ERV1 1601 1718 -6402 366 277 49 48 chr5 10046877 10047135 -193038397 + MER65B-int LTR ERV1 2944 4195 -1719 437 275 21 47 chr5 10047432 10047625 -193037907 + MER65B-int LTR ERV1 3545 3732 -2866 1479 194 10 14 chr5 10047674 10049230 -193036302 + MER65B-int LTR ERV1 2842 5772 -491 1315 257 81 19 chr5 10049236 10049606 -193035926 + MER65B-int LTR ERV1 3629 4021 -850 2190 110 0 42 chr5 10049928 10049959 -193035573 - AluSq SINE Alu -16 297 266 2444 57 14 7 chr5 10049959 10050255 -193035277 - AluY SINE Alu -13 298 1 2190 110 0 42 chr5 10050255 10050533 -193034999 - AluSq SINE Alu -47 266 1 1251 275 22 6 chr5 10050623 10050987 -193034545 + MER65B-int LTR ERV1 4502 4871 0 1675 236 29 45 chr5 10050987 10051066 -193034466 + MER65B LTR ERV1 1 80 -451 2510 118 47 35 chr5 10051066 10051489 -193034043 + MSTA LTR MaLR 1 428 0 1675 236 29 45 chr5 10051489 10051769 -193033763 + MER65B LTR ERV1 80 352 -179 2066 45 16 0 chr5 10051769 10052013 -193033519 + AluY SINE Alu 62 309 -2 1675 236 29 45 chr5 10052013 10052169 -193033363 + MER65B LTR ERV1 352 509 -22 216 307 98 42 chr5 10052238 10052637 -193032895 - L2 LINE L2 -203 3110 2647 1973 153 124 3 chr5 10054026 10054404 -193031128 - MSTA LTR MaLR -4 424 1 587 238 131 0 chr5 10054440 10054600 -193030932 - MLT1D LTR MaLR 0 505 325 741 223 60 30 chr5 10054641 10054874 -193030658 - MLT1D LTR MaLR -258 247 8 183 42 0 0 chr5 10054952 10054976 -193030556 + (GGCTG)n Simple_repeat Simple_repeat 1 24 0 1015 234 52 101 chr5 10057222 10057706 -193027826 + MLT1C LTR MaLR 6 465 -2 225 259 0 0 chr5 10057860 10057914 -193027618 - MLT1E3 LTR MaLR -17 607 554 2297 88 3 3 chr5 10057915 10058222 -193027310 + L1PB1 LINE L1 5843 6149 -2 1383 220 79 86 chr5 10058231 10058803 -193026729 - MLT1E1 LTR MaLR -24 630 63 614 289 87 24 chr5 10059347 10059645 -193025887 + L1MC4a LINE L1 5578 5894 -1914 2200 138 33 33 chr5 10060244 10060606 -193024926 + THE1B LTR MaLR 3 364 0 1074 183 0 11 chr5 10062380 10062566 -193022966 - AluJb SINE Alu -10 302 119 1695 191 13 34 chr5 10062570 10062940 -193022592 + MLT2C1 LTR ERVL 9 534 -20 190 0 67 0 chr5 10063059 10063089 -193022443 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 2555 65 10 0 chr5 10063828 10064136 -193021396 - AluY SINE Alu 0 311 1 2396 97 0 3 chr5 10064138 10064438 -193021094 - AluSg SINE Alu -11 299 1 527 245 82 55 chr5 10064643 10064900 -193020632 - LTR37B LTR ERV1 -64 404 141 540 219 48 37 chr5 10065612 10065799 -193019733 + MER53 DNA DNA 1 189 0 401 223 18 9 chr5 10066028 10066140 -193019392 - MER89 LTR ERV1 0 559 447 634 192 41 7 chr5 10066514 10066660 -193018872 + MER20 DNA MER1_type 3 153 -66 487 240 76 55 chr5 10067109 10067384 -193018148 - MLT2F LTR ERVL -149 514 234 235 299 39 24 chr5 10067418 10067545 -193017987 - MLT2F LTR ERVL -533 130 2 504 106 0 64 chr5 10067800 10067894 -193017638 + FLAM_C SINE Alu 56 143 0 728 169 29 0 chr5 10068047 10068219 -193017313 + CT-rich Low_complexity Low_complexity 4 180 0 970 320 77 68 chr5 10068544 10069417 -193016115 + L1M4 LINE L1 2246 3129 -3017 2560 60 3 0 chr5 10069417 10069717 -193015815 - AluY SINE Alu -10 301 1 970 320 77 68 chr5 10069717 10069766 -193015766 + L1M4 LINE L1 3129 3176 -2970 234 0 0 0 chr5 10070451 10070477 -193015055 + (TG)n Simple_repeat Simple_repeat 2 27 0 1430 160 9 4 chr5 10070504 10070735 -193014797 + AluSg/x SINE Alu 65 296 -14 182 191 0 32 chr5 10070815 10070878 -193014654 + CT-rich Low_complexity Low_complexity 4 64 0 184 246 290 14 chr5 10071350 10071488 -193014044 + MER5B DNA MER1_type 3 178 0 473 245 64 56 chr5 10071855 10072058 -193013474 + MIR SINE MIR 3 207 -55 502 283 83 86 chr5 10072228 10072649 -193012883 - L2 LINE L2 -5 3267 2848 189 281 104 21 chr5 10072781 10072877 -193012655 + MIR3 SINE MIR 77 180 -28 453 320 172 24 chr5 10075735 10076113 -193009419 + L1M4 LINE L1 4399 4832 -1314 434 341 155 17 chr5 10077986 10078347 -193007185 + L2 LINE L2 2555 2965 -349 3212 207 47 5 chr5 10079003 10079896 -193005636 - L1 LINE L1 -2583 3563 2633 1449 168 47 7 chr5 10080186 10080483 -193005049 + L1PB3 LINE L1 5845 6153 -1 5395 144 41 3 chr5 10083522 10085021 -193000511 - L1PB3 LINE L1 0 6154 4601 249 180 0 0 chr5 10087385 10087435 -192998097 + (TATG)n Simple_repeat Simple_repeat 2 51 0 4061 213 54 16 chr5 10087514 10089281 -192996251 - L1P LINE L1 -3638 3159 1326 2103 242 3 45 chr5 10089284 10089909 -192995623 + L1P LINE L1 3152 3750 -3047 1252 89 187 0 chr5 10090123 10090358 -192995174 + L1MA7 LINE L1 6013 6291 0 241 269 45 0 chr5 10090763 10090830 -192994702 + MIR SINE MIR 89 158 -104 1755 179 32 17 chr5 10091055 10091402 -192994130 + L1MB3 LINE L1 5788 6139 -44 2034 105 0 45 chr5 10091407 10091720 -192993812 + AluSx SINE Alu 3 301 -11 423 0 0 0 chr5 10091753 10091800 -192993732 + (TG)n Simple_repeat Simple_repeat 2 48 0 207 325 0 0 chr5 10092069 10092152 -192993380 + A-rich Low_complexity Low_complexity 1 83 0 236 259 0 0 chr5 10092501 10092555 -192992977 - MLT1E3 LTR MaLR -17 607 554 2290 86 3 3 chr5 10092556 10092860 -192992672 + L1PB1 LINE L1 5843 6146 -5 1605 213 79 86 chr5 10092872 10093444 -192992088 - MLT1E1 LTR MaLR -24 630 63 1158 133 4 4 chr5 10094996 10095239 -192990293 + (TCCA)n Simple_repeat Simple_repeat 1 243 0 700 123 0 15 chr5 10095252 10095382 -192990150 + (TCCA)n Simple_repeat Simple_repeat 2 129 0 533 171 7 110 chr5 10096078 10096146 -192989386 - MLT1C LTR MaLR 0 467 394 1718 94 109 8 chr5 10096146 10096402 -192989130 + AluSc SINE Alu 1 282 -27 206 32 32 0 chr5 10096407 10096438 -192989094 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 533 171 7 110 chr5 10096438 10096509 -192989023 - MLT1C LTR MaLR -77 390 337 2102 129 67 14 chr5 10098234 10098590 -192986942 - THE1C LTR MaLR 0 375 1 256 228 18 0 chr5 10102052 10102109 -192983423 - MIR SINE MIR -69 139 82 1724 140 20 3 chr5 10107152 10107445 -192978087 - AluJo SINE Alu -3 309 12 1593 169 23 36 chr5 10107774 10108082 -192977450 - AluJo SINE Alu -8 304 1 189 74 0 0 chr5 10109481 10109508 -192976024 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 971 216 53 0 chr5 10109632 10109840 -192975692 - MER20 DNA MER1_type 0 219 1 262 369 110 28 chr5 10109886 10110203 -192975329 - L2 LINE L2 -1 3271 2929 326 91 18 0 chr5 10110243 10110298 -192975234 + (TG)n Simple_repeat Simple_repeat 2 57 0 837 266 19 9 chr5 10110332 10110546 -192974986 + MIR SINE MIR 47 262 0 329 354 0 19 chr5 10111406 10111567 -192973965 + (TG)n Simple_repeat Simple_repeat 1 158 0 2175 105 0 10 chr5 10113139 10113443 -192972089 - AluSx SINE Alu -11 301 1 554 243 36 0 chr5 10113855 10113995 -192971537 - MER20 DNA MER1_type -68 151 7 1500 228 85 7 chr5 10114256 10114681 -192970851 - MLT1C LTR MaLR -4 463 6 485 327 23 32 chr5 10116202 10116419 -192969113 - MIR SINE MIR -32 230 16 243 328 113 41 chr5 10121569 10121764 -192963768 - MIR SINE MIR -32 230 22 210 333 114 40 chr5 10121971 10122172 -192963360 - MIR SINE MIR -26 236 21 384 148 59 2 chr5 10123049 10123138 -192962394 + MLT1J2 LTR MaLR 68 141 -309 435 373 97 35 chr5 10123368 10124164 -192961368 + L1ME LINE L1 4657 5512 -764 1480 231 73 31 chr5 10124832 10125375 -192960157 + MLT1F1 LTR MaLR 1 566 -1 448 246 62 61 chr5 10125626 10125792 -192959740 + L1ME LINE L1 5495 5666 -455 195 184 0 0 chr5 10126052 10126090 -192959442 + (TG)n Simple_repeat Simple_repeat 2 39 0 188 322 0 78 chr5 10126701 10126791 -192958741 + L3 LINE CR1 356 438 -1139 310 267 0 40 chr5 10126991 10127092 -192958440 - L1MC4 LINE L1 -1338 6704 6608 262 219 42 0 chr5 10127132 10127228 -192958304 + (TA)n Simple_repeat Simple_repeat 1 100 0 1771 171 45 19 chr5 10128957 10129331 -192956201 + MLT1B LTR MaLR 4 387 -3 237 111 0 63 chr5 10129373 10129436 -192956096 + (GGGA)n Simple_repeat Simple_repeat 2 60 0 269 326 0 0 chr5 10130512 10130598 -192954934 + GA-rich Low_complexity Low_complexity 1 86 0 1931 144 3 0 chr5 10131307 10131606 -192953926 + AluSx SINE Alu 7 306 -6 832 88 0 18 chr5 10132499 10132613 -192952919 + AluSp/q SINE Alu 185 296 -17 2464 53 0 0 chr5 10132661 10132989 -192952543 + AluY SINE Alu 1 328 0 1553 216 71 38 chr5 10136626 10137074 -192948458 + Charlie4a DNA MER1_type 4 466 -42 474 291 7 0 chr5 10138880 10139021 -192946511 + MIR SINE MIR 102 243 -19 412 276 41 29 chr5 10140889 10141059 -192944473 + MER5B DNA MER1_type 7 178 0 1771 133 14 30 chr5 10142037 10142377 -192943155 + MLT1B LTR MaLR 1 390 0 1946 141 7 7 chr5 10142405 10142695 -192942837 + AluJo SINE Alu 1 290 -22 243 152 0 0 chr5 10142843 10142889 -192942643 + (TG)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr5 10144228 10144253 -192941279 + AT_rich Low_complexity Low_complexity 1 25 0 250 303 9 28 chr5 10145342 10145451 -192940081 + MIR3 SINE MIR 102 208 0 326 330 0 58 chr5 10146830 10147021 -192938511 + G-rich Low_complexity Low_complexity 1 180 0 24 0 0 0 chr5 10147264 10147288 -192938244 + GC_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr5 10147302 10147330 -192938202 + GC_rich Low_complexity Low_complexity 1 28 0 38 68 0 0 chr5 10147728 10147801 -192937731 + GC_rich Low_complexity Low_complexity 1 73 0 194 0 0 37 chr5 10147849 10147876 -192937656 + (CGAA)n Simple_repeat Simple_repeat 4 29 0 1083 139 0 0 chr5 10148213 10148393 -192937139 + (TTC)n Simple_repeat Simple_repeat 1 180 0 764 224 11 38 chr5 10148447 10148630 -192936902 - MLT1B LTR MaLR -211 179 2 2082 136 19 45 chr5 10149204 10149578 -192935954 + THE1B LTR MaLR 1 364 0 303 311 52 15 chr5 10150314 10150449 -192935083 + MIR SINE MIR 25 164 -98 233 263 84 66 chr5 10150540 10150753 -192934779 + L1MC1 LINE L1 3895 4111 -2035 363 205 18 36 chr5 10151519 10151749 -192933783 + (TATAA)n Simple_repeat Simple_repeat 1 225 0 228 217 29 0 chr5 10151722 10151791 -192933741 + T-rich Low_complexity Low_complexity 1 71 0 * 23 54 0 0 chr5 10151820 10151857 -192933675 + AT_rich Low_complexity Low_complexity 1 37 0 5340 204 15 16 chr5 10152052 10153055 -192932477 + L1MC1 LINE L1 4819 5821 -512 375 23 0 0 chr5 10153055 10153099 -192932433 + (CA)n Simple_repeat Simple_repeat 1 44 0 5340 204 15 16 chr5 10153099 10153247 -192932285 + L1MC1 LINE L1 5821 5968 -365 2044 149 3 0 chr5 10153247 10153556 -192931976 + AluSx SINE Alu 1 310 -2 5340 204 15 16 chr5 10153556 10153920 -192931612 + L1MC1 LINE L1 5968 6333 0 541 240 25 75 chr5 10154004 10154127 -192931405 + MIR SINE MIR 73 184 -78 2115 128 0 16 chr5 10154127 10154431 -192931101 - AluSx SINE Alu -13 299 1 541 240 25 75 chr5 10154431 10154507 -192931025 + MIR SINE MIR 184 262 0 2085 124 25 0 chr5 10155315 10155597 -192929935 + AluSg SINE Alu 5 293 -17 210 118 0 0 chr5 10156066 10156100 -192929432 + (CATATA)n Simple_repeat Simple_repeat 5 38 0 263 191 176 69 chr5 10156101 10156232 -192929300 + L1ME4a LINE L1 5947 6091 -30 202 146 0 24 chr5 10156857 10156898 -192928634 + (TA)n Simple_repeat Simple_repeat 1 40 0 1456 95 21 45 chr5 10157037 10157280 -192928252 + L1PA5 LINE L1 5918 6154 0 186 189 0 0 chr5 10158622 10158659 -192926873 + (CAT)n Simple_repeat Simple_repeat 2 38 0 236 184 207 23 chr5 10158831 10158918 -192926614 + MIR SINE MIR 52 154 -108 816 267 42 14 chr5 10159861 10160208 -192925324 + L1ME LINE L1 524 873 -5197 680 191 58 143 chr5 10162249 10162393 -192923139 - MLT1B LTR MaLR -122 268 160 2192 129 36 33 chr5 10162393 10162756 -192922776 + THE1B LTR MaLR 1 364 0 680 191 58 143 chr5 10162756 10162904 -192922628 - MLT1B LTR MaLR -230 160 1 327 165 22 11 chr5 10163484 10163575 -192921957 + (CA)n Simple_repeat Simple_repeat 2 93 0 535 299 58 17 chr5 10163938 10164179 -192921353 - LTR16C LTR ERVL -94 397 147 1297 163 0 5 chr5 10164256 10164465 -192921067 + AluJb SINE Alu 86 293 -19 216 135 0 0 chr5 10164479 10164516 -192921016 + (CA)n Simple_repeat Simple_repeat 2 38 0 3103 140 45 18 chr5 10164751 10165302 -192920230 + L1MB3 LINE L1 5618 6183 0 198 305 17 0 chr5 10166229 10166288 -192919244 + L2 LINE L2 3249 3308 -5 1937 103 107 7 chr5 10169569 10169850 -192915682 + AluSx SINE Alu 1 309 -3 766 235 6 0 chr5 10170732 10170894 -192914638 - MLT1E2 LTR MaLR -6 499 337 1162 249 24 42 chr5 10170944 10171322 -192914210 + MLT1C LTR MaLR 97 467 0 1026 226 65 62 chr5 10171339 10171675 -192913857 - MLT1E2 LTR MaLR -289 337 1 199 307 150 13 chr5 10172078 10172231 -192913301 - L2 LINE L2 -222 3050 2877 673 122 9 0 chr5 10172454 10172561 -192912971 + MER50 LTR ERV1 497 604 -130 908 249 128 21 chr5 10175019 10175348 -192910184 - MLT1D LTR MaLR -6 499 136 599 148 9 19 chr5 10175468 10175576 -192909956 - MLT2C2 LTR ERVL -357 107 1 1453 237 58 17 chr5 10176330 10176747 -192908785 + MLT1C LTR MaLR 1 434 -33 1332 115 0 6 chr5 10176759 10176941 -192908591 - AluSq SINE Alu -132 181 1 2078 119 0 7 chr5 10177728 10178021 -192907511 + AluSx SINE Alu 1 291 -21 23 54 0 0 chr5 10178542 10178579 -192906953 + AT_rich Low_complexity Low_complexity 1 37 0 309 206 39 59 chr5 10178593 10178695 -192906837 + MIR3 SINE MIR 86 185 -23 407 339 5 16 chr5 10179508 10179700 -192905832 - MIR SINE MIR -29 233 44 287 269 0 0 chr5 10180370 10180437 -192905095 + CT-rich Low_complexity Low_complexity 2 68 0 669 145 51 0 chr5 10182249 10182387 -192903145 + L1MA5 LINE L1 6155 6299 -1 2946 143 65 6 chr5 10182530 10183020 -192902512 - LTR44 LTR ERV1 0 519 1 3055 77 10 2 chr5 10183187 10183588 -192901944 + MLT2A1 LTR ERVL 1 404 -40 326 132 38 0 chr5 10183597 10183650 -192901882 + L1MC4 LINE L1 6649 6703 -1339 231 133 0 0 chr5 10183664 10183709 -192901823 + (TA)n Simple_repeat Simple_repeat 2 46 0 362 253 48 0 chr5 10183718 10183801 -192901731 + L1MC4 LINE L1 6614 6700 -1342 256 85 149 0 chr5 10183802 10183849 -192901683 + MLT2A1 LTR ERVL 391 444 0 306 78 39 0 chr5 10183849 10183900 -192901632 + MLT2A1 LTR ERVL 348 400 -44 213 182 0 0 chr5 10183900 10183933 -192901599 + (TG)n Simple_repeat Simple_repeat 1 33 0 361 270 44 20 chr5 10183933 10184121 -192901411 + L1MC4 LINE L1 6532 6703 -1139 256 85 149 0 chr5 10184122 10184169 -192901363 + MLT2A1 LTR ERVL 391 444 0 430 100 213 0 chr5 10184169 10184209 -192901323 + MLT2A1 LTR ERVL 348 378 -66 228 67 0 0 chr5 10184209 10184239 -192901293 + (TA)n Simple_repeat Simple_repeat 2 31 0 430 100 213 0 chr5 10184239 10184278 -192901254 + MLT2A1 LTR ERVL 378 444 0 294 95 0 0 chr5 10184755 10184797 -192900735 + (TG)n Simple_repeat Simple_repeat 1 42 0 315 49 0 0 chr5 10185256 10185297 -192900235 + (TG)n Simple_repeat Simple_repeat 1 41 0 1542 113 8 8 chr5 10185504 10185743 -192899789 - MER57B LTR ERV1 0 434 196 24 0 0 0 chr5 10186013 10186037 -192899495 + AT_rich Low_complexity Low_complexity 1 24 0 1398 122 15 5 chr5 10186079 10186284 -192899248 - MER57B LTR ERV1 -227 207 1 1704 196 60 3 chr5 10186494 10186811 -192898721 + MLT1A1 LTR MaLR 9 343 -22 557 144 33 0 chr5 10186978 10187068 -192898464 + FLAM_A SINE Alu 32 124 -18 2222 106 6 3 chr5 10188176 10188487 -192897045 - AluSx SINE Alu 0 312 1 389 65 0 81 chr5 10189605 10189645 -192895887 - MLT2B1 LTR ERVL 0 520 485 990 125 0 0 chr5 10189645 10189821 -192895711 + (TA)n Simple_repeat Simple_repeat 2 177 0 389 65 0 81 chr5 10189821 10189842 -192895690 - MLT2B1 LTR ERVL -35 485 464 440 249 18 30 chr5 10189853 10190069 -192895463 + L1MC4 LINE L1 6538 6703 -1139 334 356 0 0 chr5 10189959 10190074 -192895458 - L1MC4 LINE L1 -1339 6703 6589 * 438 223 0 43 chr5 10190073 10190167 -192895365 + L1MC4 LINE L1 6614 6703 -1339 359 306 90 15 chr5 10190145 10190279 -192895253 - L1MC4 LINE L1 -1337 6705 6562 * 1549 234 105 18 chr5 10192408 10192866 -192892666 - MLT1D LTR MaLR 0 505 8 423 255 56 87 chr5 10192892 10193123 -192892409 + MLT1K LTR MaLR 328 551 -37 23 0 0 0 chr5 10193778 10193801 -192891731 + AT_rich Low_complexity Low_complexity 1 23 0 1999 113 0 3 chr5 10194414 10194757 -192890775 + AluSx SINE Alu 1 342 0 224 269 10 0 chr5 10194952 10195056 -192890476 + (TG)n Simple_repeat Simple_repeat 2 106 0 847 239 50 18 chr5 10195404 10195622 -192889910 - MLT1B LTR MaLR 0 390 166 436 189 7 28 chr5 10195624 10195767 -192889765 + CT-rich Low_complexity Low_complexity 1 140 0 755 57 9 0 chr5 10195895 10196000 -192889532 + (TTC)n Simple_repeat Simple_repeat 1 106 0 677 94 48 27 chr5 10196100 10196626 -192888906 + (TG)n Simple_repeat Simple_repeat 1 537 0 795 48 59 12 chr5 10196646 10197041 -192888491 + (TG)n Simple_repeat Simple_repeat 1 413 0 257 50 0 25 chr5 10197583 10197623 -192887909 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 220 281 116 42 chr5 10197728 10197911 -192887621 - MIR SINE MIR -48 160 17 1818 114 0 43 chr5 10198264 10198603 -192886929 + AluSx SINE Alu 14 340 0 430 215 145 50 chr5 10198728 10198970 -192886562 + L1ME4a LINE L1 5720 5984 -137 782 306 31 5 chr5 10200031 10200253 -192885279 - MIR SINE MIR -22 240 13 218 306 74 25 chr5 10200487 10200608 -192884924 - MIR3 SINE MIR -52 156 30 229 299 0 26 chr5 10200655 10200732 -192884800 + G-rich Low_complexity Low_complexity 1 75 0 1066 243 125 33 chr5 10200850 10201293 -192884239 + MLT1G3 LTR MaLR 4 469 -61 6257 134 19 6 chr5 10201341 10203144 -192882388 + L1PA14 LINE L1 4144 6050 -111 2629 99 0 25 chr5 10203144 10203508 -192882024 + THE1A LTR MaLR 1 355 0 6257 134 19 6 chr5 10203508 10203620 -192881912 + L1PA14 LINE L1 6050 6159 -2 310 233 0 14 chr5 10203622 10203695 -192881837 + MLT1G3 LTR MaLR 496 567 0 655 248 125 80 chr5 10203719 10204159 -192881373 + LTR67 LTR ERVL 98 557 0 252 301 96 20 chr5 10204351 10204497 -192881035 + MER117 DNA MER1_type 4 160 -37 368 274 226 12 chr5 10204794 10204958 -192880574 - MLT1J LTR MaLR -312 199 1 293 374 20 20 chr5 10205413 10205616 -192879916 - ERVL LTR ERVL -5133 631 429 29 0 0 0 chr5 10205727 10205756 -192879776 + AT_rich Low_complexity Low_complexity 1 29 0 2002 101 0 14 chr5 10206173 10206449 -192879083 + AluSx SINE Alu 1 272 -40 25 31 0 0 chr5 10206467 10206499 -192879033 + AT_rich Low_complexity Low_complexity 1 32 0 866 142 64 0 chr5 10206509 10206650 -192878882 - FRAM SINE Alu -30 146 1 1992 128 0 10 chr5 10207534 10207832 -192877700 + AluSx SINE Alu 1 295 -17 2419 222 30 29 chr5 10207856 10208481 -192877051 - L1ME2 LINE L1 -4 6160 5535 285 29 0 0 chr5 10208905 10208939 -192876593 + (GA)n Simple_repeat Simple_repeat 1 34 0 2192 101 0 0 chr5 10210468 10210764 -192874768 + AluSx SINE Alu 1 296 -16 1096 178 6 10 chr5 10212096 10212438 -192873094 + MLT1B LTR MaLR 1 390 0 185 300 67 33 chr5 10212966 10213086 -192872446 + L2 LINE L2 3171 3294 -19 5259 130 19 50 chr5 10213923 10214374 -192871158 + L1MA5A LINE L1 5375 5838 -459 1746 117 0 4 chr5 10214374 10214631 -192870901 + AluSx SINE Alu 39 294 -18 5259 130 19 50 chr5 10214631 10214886 -192870646 + L1MA5A LINE L1 5838 6047 -250 2030 143 18 21 chr5 10214886 10215221 -192870311 - MER1B DNA MER1_type 0 337 4 5259 130 19 50 chr5 10215221 10215460 -192870072 + L1MA5A LINE L1 6047 6292 -5 276 200 0 0 chr5 10215618 10215678 -192869854 + CT-rich Low_complexity Low_complexity 2 61 0 260 253 126 0 chr5 10216175 10216262 -192869270 + MIR SINE MIR 93 190 -72 986 243 9 0 chr5 10216388 10216598 -192868934 - MER20 DNA MER1_type -6 213 2 742 175 139 0 chr5 10216717 10216854 -192868678 - AluJb SINE Alu -126 186 31 1982 128 3 0 chr5 10217122 10217419 -192868113 - AluSx SINE Alu -14 298 1 265 279 0 0 chr5 10217478 10217546 -192867986 + (TCCA)n Simple_repeat Simple_repeat 3 70 0 328 266 40 102 chr5 10217573 10217750 -192867782 + L1MC4 LINE L1 6539 6704 -1338 1681 172 0 0 chr5 10217956 10218265 -192867267 - AluJo SINE Alu 0 313 5 763 119 23 28 chr5 10219202 10219378 -192866154 + GA-rich Low_complexity Low_complexity 2 176 0 218 217 0 17 chr5 10219404 10219464 -192866068 + GA-rich Low_complexity Low_complexity 3 61 0 259 254 79 79 chr5 10219511 10219676 -192865856 + MER5B DNA MER1_type 7 171 -7 1896 102 0 38 chr5 10220873 10221210 -192864322 + AluY SINE Alu 1 326 0 1914 117 14 0 chr5 10221283 10221565 -192863967 - AluSc SINE Alu -15 294 9 210 37 0 0 chr5 10221576 10221603 -192863929 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 * 728 119 8 0 chr5 10221597 10221715 -192863817 + (TTCC)n Simple_repeat Simple_repeat 2 120 0 995 208 55 128 chr5 10221847 10222177 -192863355 - MLT1C LTR MaLR -5 462 178 2180 101 10 0 chr5 10222177 10222483 -192863049 - AluSc SINE Alu 0 309 1 995 208 55 128 chr5 10222483 10222643 -192862889 - MLT1C LTR MaLR -289 178 8 1469 166 28 110 chr5 10223729 10224156 -192861376 + MLT1B LTR MaLR 1 505 0 207 0 0 0 chr5 10225015 10225038 -192860494 + (GGGTG)n Simple_repeat Simple_repeat 2 24 0 306 145 24 76 chr5 10225040 10225158 -192860374 - MER20 DNA MER1_type -62 157 5 200 293 40 13 chr5 10225737 10225812 -192859720 - L3 LINE CR1 -1041 536 460 1594 141 23 19 chr5 10226096 10226359 -192859173 - MER1B DNA MER1_type -2 337 74 513 118 0 0 chr5 10226359 10226427 -192859105 - MER1B DNA MER1_type -156 141 74 744 128 105 45 chr5 10226427 10226560 -192858972 - MER1B DNA MER1_type -156 141 1 209 256 0 0 chr5 10227231 10227274 -192858258 - MIR SINE MIR -80 128 86 207 273 91 23 chr5 10227300 10227388 -192858144 - MIR SINE MIR -80 128 35 525 182 20 0 chr5 10228730 10228829 -192856703 + MLT2C1 LTR ERVL 4 104 -293 1272 209 147 34 chr5 10228834 10229241 -192856291 + MLT1C LTR MaLR 6 458 -9 200 282 55 55 chr5 10229297 10229407 -192856125 + MIR SINE MIR 14 123 -139 192 135 0 0 chr5 10229719 10229756 -192855776 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 1261 159 25 107 chr5 10229925 10230252 -192855280 + AluYb8 SINE Alu 1 300 -18 21 0 0 0 chr5 10230260 10230281 -192855251 + AT_rich Low_complexity Low_complexity 1 21 0 866 264 47 12 chr5 10230309 10230653 -192854879 + L1MC4 LINE L1 7687 8042 0 21 0 0 0 chr5 10230667 10230688 -192854844 + AT_rich Low_complexity Low_complexity 1 21 0 256 267 95 95 chr5 10231316 10231537 -192853995 - L2 LINE L2 -38 3234 3014 390 312 40 40 chr5 10232369 10232542 -192852990 + MER5B DNA MER1_type 1 173 -5 676 228 17 6 chr5 10232580 10232760 -192852772 - MER5A DNA MER1_type -4 185 4 185 195 0 24 chr5 10233863 10233904 -192851628 + L2 LINE L2 128 167 -3147 378 162 0 0 chr5 10234486 10234554 -192850978 - L1MD3 LINE L1 0 7995 7928 1937 206 63 20 chr5 10234638 10234820 -192850712 - L1MD3 LINE L1 -70 7925 7752 1305 199 15 103 chr5 10234820 10235218 -192850314 - MLT1A1 LTR MaLR -2 363 1 1937 206 63 20 chr5 10235218 10235524 -192850008 - L1MD3 LINE L1 -243 7752 7416 320 193 0 60 chr5 10235524 10235607 -192849925 - MLT1F1 LTR MaLR -435 132 55 213 20 0 102 chr5 10238165 10238214 -192847318 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 261 327 26 9 chr5 10238294 10238407 -192847125 - MIR3 SINE MIR -4 204 90 1968 114 3 20 chr5 10238818 10239116 -192846416 + AluSx SINE Alu 1 293 -19 869 148 49 12 chr5 10239179 10239341 -192846191 - FRAM SINE Alu -11 165 1 320 331 79 16 chr5 10239981 10240108 -192845424 + MIR3 SINE MIR 66 200 -8 1258 232 30 46 chr5 10240465 10240835 -192844697 + MLT1A1 LTR MaLR 1 364 -1 345 259 22 45 chr5 10240873 10240995 -192844537 + MIR3 SINE MIR 66 187 -21 1102 308 139 35 chr5 10241654 10242923 -192842609 + HAL1 LINE L1 753 2153 -354 304 342 40 27 chr5 10243129 10243351 -192842181 + HAL1 LINE L1 2246 2470 -37 231 257 0 0 chr5 10243848 10243949 -192841583 + (CA)n Simple_repeat Simple_repeat 2 102 0 274 196 0 0 chr5 10244761 10244817 -192840715 + L1MC4 LINE L1 6648 6703 -1339 186 189 0 0 chr5 10244825 10244862 -192840670 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 279 239 57 34 chr5 10245160 10245248 -192840284 - MLT1I LTR MaLR -130 279 190 997 238 124 46 chr5 10245979 10246391 -192839141 - MLT1C LTR MaLR -2 465 22 334 263 91 0 chr5 10246554 10246653 -192838879 + MIR SINE MIR 86 193 -69 517 109 42 30 chr5 10246772 10247039 -192838493 + (CA)n Simple_repeat Simple_repeat 1 270 0 233 29 0 29 chr5 10248562 10248597 -192836935 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 298 62 0 0 chr5 10248699 10248747 -192836785 - L1MA7 LINE L1 0 6291 6244 3542 109 35 7 chr5 10248749 10249288 -192836244 + MER41A LTR ERV1 1 554 0 291 119 0 0 chr5 10249288 10249330 -192836202 - L1M2 LINE L1 -604 5687 5646 629 101 10 20 chr5 10249330 10249429 -192836103 + MER4A LTR ERV1 1 98 -566 1890 135 3 33 chr5 10249429 10249785 -192835747 + MER4A LTR ERV1 261 664 0 2029 162 31 0 chr5 10249786 10250144 -192835388 - L1M2 LINE L1 -643 5648 5280 209 224 0 17 chr5 10250173 10250231 -192835301 + T-rich Low_complexity Low_complexity 4 60 0 2069 113 20 0 chr5 10250460 10250752 -192834780 - AluSx SINE Alu -14 298 1 214 196 36 89 chr5 10250909 10250965 -192834567 - MIR3 SINE MIR -20 188 136 483 260 68 56 chr5 10252326 10252406 -192833126 - MER46C DNA MER2_type -5 333 255 1955 164 72 18 chr5 10252406 10252795 -192832737 + MLT2D LTR ERVL 1 410 -4 483 260 68 56 chr5 10252795 10252964 -192832568 - MER46C DNA MER2_type -83 255 81 230 220 40 0 chr5 10253865 10253915 -192831617 + MLT1I LTR MaLR 228 279 -130 1677 191 34 96 chr5 10255003 10255147 -192830385 + MLT1D LTR MaLR 3 154 -351 1695 167 141 26 chr5 10255147 10255531 -192830001 - MSTA LTR MaLR 0 428 1 1677 191 34 96 chr5 10255531 10255916 -192829616 + MLT1D LTR MaLR 154 499 -6 203 246 271 16 chr5 10256203 10256325 -192829207 - L2 LINE L2 -3 3269 3117 824 265 28 14 chr5 10256557 10256772 -192828760 - MIR SINE MIR -44 218 1 719 187 99 33 chr5 10256933 10257115 -192828417 - MER3 DNA MER1_type -5 204 11 2404 118 24 21 chr5 10257280 10257654 -192827878 - THE1C LTR MaLR 0 375 1 182 348 0 0 chr5 10258449 10258495 -192827037 - L2 LINE L2 -17 3255 3210 1608 240 49 3 chr5 10258544 10258911 -192826621 - LTR39 LTR ERV1 0 783 400 365 98 43 174 chr5 10258911 10259003 -192826529 - MADE1 DNA Mariner 0 80 1 * 2271 179 33 0 chr5 10259003 10259391 -192826141 - LTR39 LTR ERV1 -382 401 1 2703 3 0 13 chr5 10259579 10259891 -192825641 - AluYa5 SINE Alu -3 308 1 322 303 79 20 chr5 10260137 10260289 -192825243 + MIR SINE MIR 90 250 -12 351 0 0 0 chr5 10260290 10260329 -192825203 + (CAT)n Simple_repeat Simple_repeat 1 39 0 823 269 83 74 chr5 10260347 10260804 -192824728 + LTR16B LTR ERVL 1 461 -3 212 0 36 0 chr5 10261425 10261453 -192824079 + (CAA)n Simple_repeat Simple_repeat 2 30 0 315 150 0 0 chr5 10261983 10262043 -192823489 + (CAT)n Simple_repeat Simple_repeat 3 62 0 2300 85 0 3 chr5 10262645 10262950 -192822582 - AluSc SINE Alu -5 304 1 1274 221 39 13 chr5 10263182 10263490 -192822042 + MLT1C LTR MaLR 1 316 -151 502 272 37 88 chr5 10263543 10263642 -192821890 - L1M4 LINE L1 -2098 4048 3945 189 94 0 0 chr5 10263648 10263680 -192821852 + (TTTAA)n Simple_repeat Simple_repeat 4 35 0 2097 95 3 0 chr5 10263680 10263958 -192821574 - AluSc SINE Alu -27 282 1 502 272 37 88 chr5 10263958 10264130 -192821402 - L1M4 LINE L1 -2201 3945 3791 1765 118 44 36 chr5 10264182 10264707 -192820825 + MER4A LTR ERV1 1 663 -1 562 254 157 14 chr5 10264707 10264985 -192820547 + MLT1G1 LTR MaLR 27 344 -251 680 252 19 0 chr5 10265014 10265173 -192820359 + MLT1G1 LTR MaLR 429 590 -5 463 280 118 40 chr5 10265187 10265712 -192819820 - L1M4 LINE L1 -2385 3761 3196 434 213 0 21 chr5 10265995 10266089 -192819443 + MER94 DNA DNA 1 92 -42 685 319 91 45 chr5 10266120 10266678 -192818854 - L1M4 LINE L1 -3252 2894 2311 410 201 72 86 chr5 10267505 10267644 -192817888 - L2 LINE L2 -24 3289 3153 200 265 193 12 chr5 10268078 10268161 -192817371 - MIR SINE MIR -115 147 50 270 309 90 71 chr5 10270899 10271310 -192814222 + L2 LINE L2 2830 3248 -24 226 284 63 0 chr5 10272933 10273028 -192812504 - MER5A DNA MER1_type -80 109 9 218 317 81 32 chr5 10273074 10273197 -192812335 + MER5A DNA MER1_type 35 163 -26 1579 205 39 55 chr5 10273213 10273598 -192811934 - MLT1B LTR MaLR -11 379 1 321 248 341 0 chr5 10275340 10275469 -192810063 - MIR SINE MIR -30 232 60 1755 153 6 32 chr5 10276205 10276518 -192809014 - AluJo SINE Alu -5 307 3 246 285 58 44 chr5 10276642 10276779 -192808753 + L1MC/D LINE L1 5711 5849 -1959 184 338 38 0 chr5 10276867 10276947 -192808585 + MER5A DNA MER1_type 7 89 -100 221 333 151 34 chr5 10276968 10277319 -192808213 + L2 LINE L2 2092 2483 -831 321 389 65 44 chr5 10277451 10277744 -192807788 + L2 LINE L2 2972 3270 -2 315 0 0 0 chr5 10279890 10279925 -192805607 + (TG)n Simple_repeat Simple_repeat 2 36 0 314 58 39 0 chr5 10280060 10280112 -192805420 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 7326 18 0 0 chr5 10280112 10280933 -192804599 - L1PA2 LINE L1 -16 6139 5319 1181 255 56 36 chr5 10280933 10281325 -192804207 + MLT1C LTR MaLR 68 467 0 675 230 49 97 chr5 10283112 10283460 -192802072 - MLT1J LTR MaLR -64 447 81 309 190 88 36 chr5 10283497 10283634 -192801898 + (CAGAGA)n Simple_repeat Simple_repeat 6 149 0 1450 191 50 0 chr5 10286172 10286450 -192799082 - Tigger3b DNA MER2_type 0 1232 941 1414 60 5 0 chr5 10286450 10286634 -192798898 - L1PA8A LINE L1 -266 5865 5681 554 77 0 0 chr5 10286634 10286704 -192798828 + L1PA8 LINE L1 6094 6171 -1 4816 113 39 95 chr5 10286705 10287707 -192797825 - Tigger3b DNA MER2_type -284 947 2 1712 188 58 80 chr5 10288161 10288677 -192796855 + MLT1D LTR MaLR 1 505 0 383 360 77 31 chr5 10290098 10290618 -192794914 + L2 LINE L2 724 1267 -2047 219 210 43 70 chr5 10290773 10290845 -192794687 - MER5B DNA MER1_type -56 128 61 237 239 0 14 chr5 10290882 10290953 -192794579 - MLT1B LTR MaLR 0 390 321 590 119 0 12 chr5 10290954 10291038 -192794494 - AluS SINE Alu -229 84 2 633 248 135 66 chr5 10291041 10291431 -192794101 - MLT1D LTR MaLR -59 408 1 1496 293 119 21 chr5 10291432 10292477 -192793055 - L1ME3A LINE L1 -28 6142 4964 282 269 141 60 chr5 10295333 10295482 -192790050 - MIR3 SINE MIR -15 193 33 1190 229 28 76 chr5 10295917 10296388 -192789144 + MLT1C LTR MaLR 3 450 -17 472 111 0 0 chr5 10296840 10296903 -192788629 - AluSc SINE Alu -92 217 155 254 86 0 0 chr5 10296903 10296938 -192788594 + 5S rRNA rRNA 62 96 -25 182 289 41 66 chr5 10297554 10297675 -192787857 - L2 LINE L2 -815 2499 2382 326 195 13 0 chr5 10297965 10298042 -192787490 + CT-rich Low_complexity Low_complexity 1 78 0 255 61 0 0 chr5 10298050 10298083 -192787449 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 477 241 85 51 chr5 10299301 10299498 -192786034 - MIR SINE MIR -39 223 15 471 188 6 0 chr5 10300579 10300672 -192784860 - Tigger4(Zombi) DNA MER2_type -2634 97 1 826 78 93 16 chr5 10302240 10302369 -192783163 - MER85 DNA T2_type 0 139 1 2040 142 7 3 chr5 10302505 10302814 -192782718 + AluSg SINE Alu 1 310 0 326 275 167 0 chr5 10302823 10302943 -192782589 + L1ME4a LINE L1 5775 5914 -207 224 320 70 0 chr5 10303499 10303599 -192781933 + L2 LINE L2 2346 2452 -862 327 315 12 85 chr5 10303615 10303961 -192781571 - MLT1I LTR MaLR -17 392 98 306 145 126 58 chr5 10304018 10304132 -192781400 + MER34 LTR ERV1 433 536 -6 1827 186 0 3 chr5 10304345 10304646 -192780886 - AluJb SINE Alu -7 305 6 1138 248 42 45 chr5 10304650 10305097 -192780435 - MLT1D LTR MaLR -59 446 1 286 330 134 0 chr5 10305262 10305456 -192780076 + MIR SINE MIR 22 241 -21 259 253 40 80 chr5 10306644 10306693 -192778839 + Charlie4 DNA MER1_type 1818 1867 -94 2334 102 0 3 chr5 10306693 10306996 -192778536 - AluSx SINE Alu -10 302 1 259 253 40 80 chr5 10306996 10307096 -192778436 + Charlie4 DNA MER1_type 1867 1961 0 264 59 0 0 chr5 10307568 10307602 -192777930 + (TG)n Simple_repeat Simple_repeat 2 35 0 268 353 0 0 chr5 10307619 10307735 -192777797 + (TG)n Simple_repeat Simple_repeat 1 116 0 256 306 0 14 chr5 10308073 10308145 -192777387 - L2 LINE L2 -2 3270 3200 338 142 125 2 chr5 10308825 10308919 -192776613 + MLT1G LTR MaLR 13 156 -393 532 231 75 0 chr5 10310224 10310358 -192775174 - MER58B DNA MER1_type -1 340 197 360 217 179 0 chr5 10311327 10311433 -192774099 - LTR40a LTR ERVL 0 519 395 473 124 16 141 chr5 10311513 10311634 -192773898 - MER20 DNA MER1_type -5 214 109 1546 178 3 51 chr5 10312699 10313019 -192772513 + AluJo SINE Alu 7 312 0 1898 177 138 5 chr5 10313103 10313481 -192772051 - MSTA LTR MaLR 0 428 1 9230 154 22 54 chr5 10313481 10315186 -192770346 - MSTA-int LTR MaLR 0 1651 1 1968 139 121 67 chr5 10315186 10315590 -192769942 - MSTA LTR MaLR 0 428 3 273 214 135 11 chr5 10315941 10316030 -192769502 - LTR16C LTR ERVL -3 488 389 216 0 0 0 chr5 10319073 10319097 -192766435 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 867 246 65 35 chr5 10319136 10319506 -192766026 - LTR37A LTR ERV1 -7 419 39 201 267 19 95 chr5 10319894 10319999 -192765533 + MIR3 SINE MIR 74 170 -38 477 278 237 0 chr5 10321426 10321620 -192763912 + MIR SINE MIR 13 252 -10 752 276 24 42 chr5 10322716 10323049 -192762483 - LTR16B LTR ERVL -137 327 1 1962 109 0 4 chr5 10324360 10324627 -192760905 - AluSx SINE Alu -46 266 1 188 238 64 87 chr5 10325798 10325970 -192759562 - MER5C DNA MER1_type -136 188 21 275 295 98 8 chr5 10326559 10326681 -192758851 - MIR SINE MIR -4 258 126 480 193 283 0 chr5 10327196 10327341 -192758191 - MER53 DNA DNA 0 189 4 261 0 0 0 chr5 10327599 10327628 -192757904 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 2046 189 23 25 chr5 10327654 10328087 -192757445 + Tigger2a DNA MER2_type 3 434 0 946 189 99 128 chr5 10328166 10328448 -192757084 + MLT1C LTR MaLR 37 303 -164 2051 107 0 4 chr5 10328448 10328718 -192756814 + AluSq SINE Alu 1 269 -44 946 189 99 128 chr5 10328718 10328879 -192756653 + MLT1C LTR MaLR 303 467 0 459 209 55 0 chr5 10330000 10330110 -192755422 - L1MA9 LINE L1 -385 5927 5812 776 154 83 6 chr5 10330111 10330140 -192755392 + L1MA9 LINE L1 6122 6147 -165 324 0 0 0 chr5 10330140 10330176 -192755356 + (CA)n Simple_repeat Simple_repeat 1 36 0 189 0 0 0 chr5 10330175 10330196 -192755336 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 776 154 83 6 chr5 10330176 10330335 -192755197 + L1MA9 LINE L1 6147 6303 -9 780 272 27 5 chr5 10331879 10332103 -192753429 + MLT1C LTR MaLR 239 467 0 180 358 15 0 chr5 10332542 10332609 -192752923 + L2 LINE L2 3246 3313 0 270 179 0 0 chr5 10334467 10334523 -192751009 + GA-rich Low_complexity Low_complexity 3 58 0 2314 107 3 3 chr5 10335824 10336133 -192749399 + AluSx SINE Alu 1 309 -3 1682 174 102 6 chr5 10336179 10336512 -192749020 + MLT1A1 LTR MaLR 1 365 0 251 228 0 0 chr5 10337652 10337709 -192747823 + T-rich Low_complexity Low_complexity 1 57 0 1133 224 82 55 chr5 10338112 10338492 -192747040 - MLT1B LTR MaLR 0 390 1 23 0 0 0 chr5 10341489 10341512 -192744020 + AT_rich Low_complexity Low_complexity 1 23 0 278 258 251 26 chr5 10341603 10341874 -192743658 + L1MC3 LINE L1 5574 5905 -1903 279 351 11 0 chr5 10342076 10342170 -192743362 + MIR SINE MIR 158 252 -10 2047 105 3 20 chr5 10342276 10342571 -192742961 + AluSx SINE Alu 9 298 -14 588 204 0 0 chr5 10343304 10343417 -192742115 + L1MC3 LINE L1 6739 6851 -934 41 21 0 0 chr5 10343434 10343482 -192742050 + AT_rich Low_complexity Low_complexity 1 48 0 936 172 15 25 chr5 10343548 10343752 -192741780 + L1MC3 LINE L1 6893 7094 -691 403 228 54 0 chr5 10343755 10343847 -192741685 + MLT1F1 LTR MaLR 35 131 -436 2630 214 28 7 chr5 10343848 10344418 -192741114 + L1MC3 LINE L1 7202 7783 -2 1866 121 0 4 chr5 10344483 10344740 -192740792 - AluSg SINE Alu -13 297 42 712 218 155 35 chr5 10344740 10345046 -192740486 - Zaphod DNA AcHobo -756 3275 2928 1282 246 53 40 chr5 10345166 10345249 -192740283 - Zaphod DNA AcHobo -1529 2502 2422 957 163 0 27 chr5 10345249 10345433 -192740099 - L1MA9 LINE L1 0 6312 6134 1282 246 53 40 chr5 10345433 10345541 -192739991 - Zaphod DNA AcHobo -1609 2422 2317 2478 91 0 0 chr5 10345541 10345850 -192739682 - AluY SINE Alu -2 309 1 1282 246 53 40 chr5 10345850 10346162 -192739370 - Zaphod DNA AcHobo -1714 2317 1991 234 233 33 0 chr5 10346212 10346272 -192739260 - Zaphod DNA AcHobo -2049 1982 1921 3982 233 66 32 chr5 10346436 10349117 -192736415 - L1MCa LINE L1 -3158 3406 569 1413 203 52 0 chr5 10349291 10349562 -192735970 - L1PB4 LINE L1 -3 6153 5869 766 295 48 63 chr5 10349574 10349987 -192735545 - L1MCa LINE L1 -5638 407 1 476 186 8 0 chr5 10350084 10350202 -192735330 + CT-rich Low_complexity Low_complexity 2 120 0 521 256 32 78 chr5 10350876 10351220 -192734312 - L1MEd LINE L1 -4884 1235 908 234 128 0 0 chr5 10351278 10351317 -192734215 + (TG)n Simple_repeat Simple_repeat 2 40 0 303 143 0 0 chr5 10351481 10351530 -192734002 - L1PA12 LINE L1 0 6168 6120 * 1797 71 0 8 chr5 10351509 10351748 -192733784 + L1PA6 LINE L1 5706 5942 -212 235 308 19 28 chr5 10351777 10351884 -192733648 - MIR SINE MIR -60 202 97 2948 6 0 0 chr5 10351915 10352226 -192733306 + AluYa5 SINE Alu 1 311 0 300 349 88 51 chr5 10352980 10353748 -192731784 - L1MEd LINE L1 -5275 844 48 189 0 0 0 chr5 10355883 10355904 -192729628 + (T)n Simple_repeat Simple_repeat 1 21 0 2107 231 28 36 chr5 10357405 10358065 -192727467 - L1MD3 LINE L1 -34 7948 7108 315 300 0 0 chr5 10358065 10358155 -192727377 + L1MC4 LINE L1 6614 6703 -1339 260 150 0 0 chr5 10358174 10358214 -192727318 - Alu SINE Alu -10 291 252 795 231 36 12 chr5 10358299 10358546 -192726986 - L1 LINE L1 -2118 4028 3776 2401 112 0 0 chr5 10358546 10358858 -192726674 - AluSx SINE Alu 0 312 1 1415 170 30 102 chr5 10358859 10359253 -192726279 - L1MD3 LINE L1 -826 7169 6804 377 223 158 7 chr5 10360877 10361016 -192724516 + LTR33 LTR ERVL 293 452 -69 28 61 0 0 chr5 10361080 10361129 -192724403 + AT_rich Low_complexity Low_complexity 1 49 0 1932 265 34 27 chr5 10361180 10361804 -192723728 - MLT1E3 LTR MaLR -4 620 5 184 121 61 0 chr5 10363259 10363292 -192722240 + L3b LINE CR1 1436 1470 -113 878 269 137 28 chr5 10364352 10364635 -192720897 - LTR16A LTR ERVL -3 447 108 2675 91 8 0 chr5 10364635 10364987 -192720545 - THE1A LTR MaLR 0 355 1 878 269 137 28 chr5 10364987 10365097 -192720435 - LTR16A LTR ERVL -342 108 11 414 294 85 28 chr5 10365219 10365430 -192720102 + MER112 DNA MER1_type 17 239 -21 * 3548 139 55 3 chr5 10365401 10365969 -192719563 + MER50 LTR ERV1 115 711 -23 216 0 0 0 chr5 10367410 10367434 -192718098 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 971 241 65 32 chr5 10367473 10367842 -192717690 - LTR37A LTR ERV1 -7 419 39 361 272 148 0 chr5 10369749 10369911 -192715621 + MIR SINE MIR 13 198 -64 1429 279 33 4 chr5 10370806 10371257 -192714275 - LTR16B LTR ERVL 0 464 1 195 303 156 9 chr5 10371618 10371727 -192713805 + L2 LINE L2 3179 3303 -10 2025 170 29 24 chr5 10372441 10372537 -192712995 - MSTA LTR MaLR 0 428 334 2696 108 11 0 chr5 10372537 10372908 -192712624 - THE1C LTR MaLR 0 375 1 2025 170 29 24 chr5 10372908 10373039 -192712493 - MSTA LTR MaLR -94 334 205 2073 126 7 10 chr5 10373039 10373341 -192712191 - AluSx SINE Alu -11 301 1 2025 170 29 24 chr5 10373341 10373494 -192712038 - MSTA LTR MaLR -223 205 45 2606 193 14 60 chr5 10373648 10374228 -192711304 - MER68 LTR ERV1 -8 554 2 258 271 94 12 chr5 10374474 10374559 -192710973 - L1ME LINE L1 -548 5573 5482 207 0 0 0 chr5 10374968 10374991 -192710541 + (T)n Simple_repeat Simple_repeat 1 23 0 2071 178 35 0 chr5 10375374 10375751 -192709781 + MLT1B LTR MaLR 1 390 0 423 56 42 0 chr5 10375906 10375977 -192709555 + (TTGTG)n Simple_repeat Simple_repeat 1 74 0 356 309 15 7 chr5 10376460 10376596 -192708936 + MER5A DNA MER1_type 50 186 -3 339 177 46 0 chr5 10376771 10376901 -192708631 + (TG)n Simple_repeat Simple_repeat 2 137 0 240 278 28 0 chr5 10376926 10376998 -192708534 + (TG)n Simple_repeat Simple_repeat 1 74 0 209 330 35 52 chr5 10378169 10378284 -192707248 - L2 LINE L2 -43 3229 3117 218 335 47 43 chr5 10378389 10378667 -192706865 - L2 LINE L2 -805 2509 2231 552 265 163 30 chr5 10378779 10379111 -192706421 - L2 LINE L2 -570 2744 2369 2428 130 11 3 chr5 10379135 10379496 -192706036 - THE1B LTR MaLR 0 364 1 272 200 12 0 chr5 10381105 10381185 -192704347 + CT-rich Low_complexity Low_complexity 3 83 0 383 233 39 10 chr5 10383182 10383285 -192702247 + MLT1J LTR MaLR 103 208 -303 535 299 99 5 chr5 10383537 10383748 -192701784 - MIR SINE MIR -7 255 25 290 192 0 0 chr5 10385148 10385200 -192700332 - L1MA8 LINE L1 -23 6268 6217 836 166 31 6 chr5 10385256 10385419 -192700113 - L1MA6 LINE L1 -197 6103 5937 * 1642 152 4 0 chr5 10385418 10385681 -192699851 + L1MA8 LINE L1 5636 5899 -392 5522 175 31 32 chr5 10387115 10387335 -192698197 + L1MC1 LINE L1 5160 5379 -954 2152 104 21 0 chr5 10387335 10387623 -192697909 + AluSx SINE Alu 1 294 -18 5522 175 31 32 chr5 10387623 10388574 -192696958 + L1MC1 LINE L1 5379 6333 0 237 186 0 0 chr5 10388911 10388954 -192696578 - L1M4 LINE L1 -940 5206 5164 180 0 0 0 chr5 10388954 10388974 -192696558 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 254 318 57 0 chr5 10389259 10389347 -192696185 - MIR SINE MIR -73 189 97 480 154 82 27 chr5 10389504 10389614 -192695918 - MER95 LTR ERV 0 431 316 304 300 40 50 chr5 10390107 10390307 -192695225 - L3 LINE CR1 -87 1490 1293 539 41 27 0 chr5 10390373 10390446 -192695086 + (TTTTC)n Simple_repeat Simple_repeat 2 76 0 180 111 0 0 chr5 10391146 10391173 -192694359 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 414 0 0 0 chr5 10391174 10391220 -192694312 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 1301 194 127 12 chr5 10392872 10393218 -192692314 - MLT1C LTR MaLR 0 467 82 282 161 148 37 chr5 10393345 10393426 -192692106 - MLT1C LTR MaLR -375 92 3 947 161 7 13 chr5 10393838 10393993 -192691539 - AluSq SINE Alu -159 154 1 2817 216 112 111 chr5 10394004 10394032 -192691500 - Zaphod DNA AcHobo -1692 2339 2313 1797 107 122 0 chr5 10394032 10394295 -192691237 - AluSq SINE Alu -18 295 1 2817 216 112 111 chr5 10394295 10395682 -192689850 - Zaphod DNA AcHobo -1718 2313 928 1699 122 122 0 chr5 10395682 10395944 -192689588 + AluSq SINE Alu 1 294 -19 2817 216 112 111 chr5 10395944 10395983 -192689549 - Zaphod DNA AcHobo -3103 928 891 2025 134 10 7 chr5 10395983 10396275 -192689257 + AluSq SINE Alu 1 293 -20 2817 216 112 111 chr5 10396275 10396520 -192689012 - Zaphod DNA AcHobo -3140 891 637 548 254 18 47 chr5 10396642 10396811 -192688721 - Zaphod DNA AcHobo -3795 236 73 271 302 65 30 chr5 10396967 10397136 -192688396 + L1ME3A LINE L1 5749 5923 -247 259 273 27 82 chr5 10397248 10397431 -192688101 + L1ME3A LINE L1 5989 6161 -9 190 30 152 0 chr5 10397495 10397528 -192688004 - L2 LINE L2 -2 3311 3274 2002 138 7 0 chr5 10397557 10397848 -192687684 + AluY SINE Alu 1 293 -18 2162 183 54 31 chr5 10397964 10398445 -192687087 - LTR22B LTR ERVK 0 492 1 197 211 19 0 chr5 10400314 10400366 -192685166 + GA-rich Low_complexity Low_complexity 1 53 0 263 296 0 12 chr5 10400367 10400382 -192685150 + G-rich Low_complexity Low_complexity 2 16 -65 1800 193 19 43 chr5 10400382 10400756 -192684776 - MLT1A1 LTR MaLR 0 365 1 263 296 0 12 chr5 10400756 10400821 -192684711 + G-rich Low_complexity Low_complexity 16 81 0 24 0 0 0 chr5 10400978 10401002 -192684530 + AT_rich Low_complexity Low_complexity 1 24 0 722 262 103 11 chr5 10401250 10401624 -192683908 - L1M4 LINE L1 -1484 4662 4250 1014 194 55 27 chr5 10404584 10404913 -192680619 + L1MC2 LINE L1 4979 5316 -830 * 5192 166 19 22 chr5 10404908 10406099 -192679433 - L1PA16 LINE L1 -12 6154 4975 2877 201 24 39 chr5 10406101 10406771 -192678761 + L1MC2 LINE L1 5304 5963 -381 386 340 42 50 chr5 10407378 10407640 -192677892 - L2 LINE L2 -1907 1407 1148 2304 109 7 0 chr5 10407654 10407958 -192677574 + AluSg SINE Alu 1 306 -4 1910 181 3 0 chr5 10407976 10408285 -192677247 + AluSx SINE Alu 1 310 -2 1204 275 44 6 chr5 10408396 10408716 -192676816 + LTR16A LTR ERVL 116 447 -3 1200 293 84 42 chr5 10408722 10409565 -192675967 + L2 LINE L2 2201 3091 -222 2244 116 0 0 chr5 10409565 10409868 -192675664 + AluSq SINE Alu 11 313 0 1200 293 84 42 chr5 10409868 10410101 -192675431 + L2 LINE L2 3091 3313 0 818 163 43 22 chr5 10410327 10410511 -192675021 - MER53 DNA DNA 0 189 2 512 307 88 47 chr5 10410894 10411317 -192674215 + LTR33 LTR ERVL 5 444 -77 3080 169 78 31 chr5 10411318 10411541 -192673991 + MER7C DNA MER2_type 1 212 -2816 188 67 33 0 chr5 10411541 10411571 -192673961 + (CTCA)n Simple_repeat Simple_repeat 4 34 0 3080 169 78 31 chr5 10411571 10411922 -192673610 + MER7C DNA MER2_type 212 602 0 2470 124 3 0 chr5 10412615 10412962 -192672570 - L1PA13 LINE L1 -14 6149 5802 21 57 0 0 chr5 10414325 10414360 -192671172 + AT_rich Low_complexity Low_complexity 1 35 0 33 56 0 0 chr5 10414391 10414445 -192671087 + AT_rich Low_complexity Low_complexity 1 54 0 1627 90 36 0 chr5 10414578 10414800 -192670732 + L1PA10 LINE L1 5935 6164 -4 36 53 0 0 chr5 10414929 10414986 -192670546 + AT_rich Low_complexity Low_complexity 1 57 0 270 285 51 15 chr5 10415119 10415256 -192670276 - MIR SINE MIR -40 222 81 345 24 0 0 chr5 10415271 10415313 -192670219 + (TG)n Simple_repeat Simple_repeat 2 43 0 1369 214 206 3 chr5 10415316 10415694 -192669838 - MLT2B2 LTR ERVL -60 455 1 235 296 0 35 chr5 10415811 10415926 -192669606 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 * 274 275 58 7 chr5 10415867 10416005 -192669527 + (TAGA)n Simple_repeat Simple_repeat 2 146 0 1798 138 64 3 chr5 10416244 10416527 -192669005 - AluJb SINE Alu -12 300 1 12608 176 22 8 chr5 10417809 10419529 -192666003 - L1PB3 LINE L1 0 6154 4460 230 29 59 0 chr5 10419529 10419563 -192665969 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 12608 176 22 8 chr5 10419563 10419968 -192665564 - L1PB3 LINE L1 -1694 4460 4062 1962 138 10 3 chr5 10419968 10420264 -192665268 - AluSg SINE Alu -12 298 1 12608 176 22 8 chr5 10420264 10421609 -192663923 - L1PB3 LINE L1 -2092 4062 2633 1164 221 31 7 chr5 10421881 10422186 -192663346 - L1MB5 LINE L1 0 6180 5867 1114 219 16 27 chr5 10422185 10422441 -192663091 + L1MB5 LINE L1 5625 5877 -297 * 24 0 0 0 chr5 10422824 10422848 -192662684 + AT_rich Low_complexity Low_complexity 1 24 0 254 250 7 0 chr5 10424125 10424277 -192661255 + (CA)n Simple_repeat Simple_repeat 2 154 0 323 118 20 0 chr5 10424962 10425013 -192660519 - MLT1A1 LTR MaLR -313 52 1 298 294 28 18 chr5 10425107 10425216 -192660316 + MER94 DNA DNA 3 112 -22 1609 135 54 0 chr5 10425312 10425571 -192659961 - AluSx SINE Alu 0 312 40 21 36 0 0 chr5 10426506 10426534 -192658998 + AT_rich Low_complexity Low_complexity 1 28 0 1664 184 23 26 chr5 10428727 10429037 -192656495 + AluJo SINE Alu 1 309 -3 201 178 22 0 chr5 10429641 10429686 -192655846 + L2 LINE L2 3268 3313 0 306 0 0 0 chr5 10431439 10431473 -192654059 + (CA)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr5 10432023 10432046 -192653486 + AT_rich Low_complexity Low_complexity 1 23 0 229 297 33 11 chr5 10432419 10432510 -192653022 - MLT1H LTR MaLR 0 549 457 2235 206 11 31 chr5 10434304 10434751 -192650781 + MLT2B3 LTR ERVL 9 446 -108 426 265 54 20 chr5 10435795 10435942 -192649590 + LTR33 LTR ERVL 316 467 -54 1817 157 10 3 chr5 10435964 10436269 -192649263 - AluSx SINE Alu -1 311 5 1529 93 29 0 chr5 10437018 10437223 -192648309 + AluSc SINE Alu 93 303 -6 274 290 20 60 chr5 10437266 10437366 -192648166 - MIR SINE MIR -73 135 40 320 313 106 28 chr5 10438003 10438148 -192647384 + L2 LINE L2 1548 1717 -1597 2228 115 0 16 chr5 10438148 10438462 -192647070 + AluSx SINE Alu 1 309 -3 320 313 106 28 chr5 10438462 10438533 -192646999 + L2 LINE L2 1717 1781 -1533 665 272 123 6 chr5 10438578 10438894 -192646638 + L2 LINE L2 2073 2425 -889 192 237 17 0 chr5 10438910 10438969 -192646563 + L2 LINE L2 2366 2425 -889 422 301 35 12 chr5 10439218 10439391 -192646141 + L2 LINE L2 2366 2542 -772 1334 186 54 11 chr5 10439396 10439675 -192645857 - MER2 DNA MER2_type -7 338 48 441 50 0 0 chr5 10440199 10440259 -192645273 + (TG)n Simple_repeat Simple_repeat 1 60 0 317 161 345 0 chr5 10440328 10440415 -192645117 - L2 LINE L2 -4 3309 3193 392 118 15 0 chr5 10440491 10440559 -192644973 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 1490 208 83 38 chr5 10440942 10441385 -192644147 + MLT1C LTR MaLR 5 467 0 347 153 56 14 chr5 10441530 10441602 -192643930 + MIR SINE MIR 98 172 -90 208 107 0 0 chr5 10441600 10441628 -192643904 - MIR SINE MIR -218 44 17 * 1680 196 32 27 chr5 10444342 10444714 -192640818 + MLT2D LTR ERVL 1 374 -40 305 179 45 0 chr5 10444786 10444853 -192640679 + MLT2D LTR ERVL 451 520 0 2164 126 0 0 chr5 10446616 10446909 -192638623 - AluSx SINE Alu -14 298 6 21 0 0 0 chr5 10447340 10447361 -192638171 + AT_rich Low_complexity Low_complexity 1 21 0 1101 231 43 61 chr5 10447410 10447786 -192637746 + MLT1A2 LTR MaLR 2 370 -4 23 0 0 0 chr5 10448006 10448029 -192637503 + AT_rich Low_complexity Low_complexity 1 23 0 1683 156 33 77 chr5 10448842 10448860 -192636672 - MER93b LTR ERV1 0 373 356 1994 134 13 29 chr5 10448860 10449167 -192636365 + AluSx SINE Alu 1 302 -10 1683 156 33 77 chr5 10449167 10449538 -192635994 - MER93b LTR ERV1 -17 356 1 634 300 77 13 chr5 10449547 10449780 -192635752 - MIR SINE MIR -1 261 14 1397 224 43 19 chr5 10450626 10451042 -192634490 + MLT1C LTR MaLR 1 426 -41 267 333 90 9 chr5 10451682 10451821 -192633711 + MIR SINE MIR 17 166 -63 1230 157 101 173 chr5 10455666 10455947 -192629585 - MLT1C LTR MaLR 0 467 236 2233 112 3 0 chr5 10455947 10456250 -192629282 + AluSx SINE Alu 5 308 -4 1230 157 101 173 chr5 10456250 10456471 -192629061 - MLT1C LTR MaLR -231 236 1 299 271 51 25 chr5 10457129 10457247 -192628285 + MIR SINE MIR 16 136 -72 207 288 25 76 chr5 10458675 10458793 -192626739 - MIR SINE MIR -42 220 109 1949 159 21 40 chr5 10458980 10459352 -192626180 - MLT1A1 LTR MaLR 0 365 1 1947 198 15 69 chr5 10459377 10459842 -192625690 - MLT1A1-int LTR MaLR -42 1693 1254 * 2504 253 73 63 chr5 10459809 10459969 -192625563 - MLT1A1-int LTR MaLR -630 1105 948 2794 175 26 72 chr5 10459969 10460610 -192624922 + LTR9 LTR ERV1 1 612 0 2504 253 73 63 chr5 10460610 10461374 -192624158 - MLT1A1-int LTR MaLR -787 948 171 993 218 27 46 chr5 10461395 10461656 -192623876 + MLT1A1 LTR MaLR 1 256 -109 536 205 0 17 chr5 10461656 10461773 -192623759 - L1PA15 LINE L1 0 6165 6051 567 186 18 0 chr5 10461875 10461988 -192623544 - L1PA15 LINE L1 -549 5619 5505 427 240 0 56 chr5 10461989 10462114 -192623418 + MLT1A1 LTR MaLR 246 363 -2 364 269 0 21 chr5 10462116 10462209 -192623323 - MLT1A1 LTR MaLR -272 93 3 22 0 0 0 chr5 10463766 10463788 -192621744 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr5 10463853 10463880 -192621652 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 949 93 29 88 chr5 10463880 10464085 -192621447 - L1PA10 LINE L1 -13 6155 5963 937 179 72 9 chr5 10464195 10464418 -192621114 + L1MC2 LINE L1 6099 6335 -9 2115 137 7 0 chr5 10465613 10465919 -192619613 - AluSx SINE Alu -4 308 1 2208 150 6 107 chr5 10466492 10466749 -192618783 - MER41C LTR ERV1 -1 634 352 2165 142 129 5 chr5 10466749 10467130 -192618402 + MSTA LTR MaLR 1 428 0 2208 150 6 107 chr5 10467130 10467488 -192618044 - MER41C LTR ERV1 -283 352 1 1322 209 81 60 chr5 10468005 10468387 -192617145 + MLT1B LTR MaLR 1 390 0 22 35 0 0 chr5 10470231 10470260 -192615272 + AT_rich Low_complexity Low_complexity 1 29 0 2602 108 5 24 chr5 10472027 10472398 -192613134 + THE1B LTR MaLR 1 364 0 351 0 0 0 chr5 10472958 10472997 -192612535 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 861 255 180 19 chr5 10476316 10476688 -192608844 + MLT1H LTR MaLR 1 432 -117 251 293 19 24 chr5 10476690 10476799 -192608733 - MIR SINE MIR -94 114 4 264 77 0 0 chr5 10476960 10476999 -192608533 + (TC)n Simple_repeat Simple_repeat 1 39 0 1688 172 14 24 chr5 10477664 10477961 -192607571 + AluJb SINE Alu 5 298 -14 274 325 73 24 chr5 10477967 10478090 -192607442 - MIR SINE MIR -74 188 60 1977 63 35 3 chr5 10478557 10478842 -192606690 + L1PA10 LINE L1 5731 6024 -144 1745 122 0 0 chr5 10478948 10479203 -192606329 + L1PA13 LINE L1 5907 6161 -2 339 250 88 56 chr5 10479223 10479383 -192606149 - L1MC/D LINE L1 -2341 5467 5303 435 236 0 0 chr5 10479476 10479565 -192605967 + MER58A DNA MER1_type 1 89 -18 2198 134 7 0 chr5 10480016 10480323 -192605209 + AluSx SINE Alu 1 309 -3 647 270 23 0 chr5 10481315 10481489 -192604043 - MER5B DNA MER1_type 0 178 1 310 252 61 30 chr5 10481691 10481822 -192603710 - MIR SINE MIR -100 162 28 2321 108 0 0 chr5 10484431 10484736 -192600796 + AluSx SINE Alu 7 311 -1 1964 142 33 0 chr5 10486470 10486772 -192598760 - AluJo SINE Alu 0 312 1 713 235 110 83 chr5 10487406 10487997 -192597535 + MLT1F1 LTR MaLR 1 567 0 21 0 0 0 chr5 10488054 10488075 -192597457 + AT_rich Low_complexity Low_complexity 1 21 0 337 247 41 14 chr5 10488076 10488149 -192597383 + MER21B LTR ERV1 15 89 -774 2886 243 110 8 chr5 10488171 10488937 -192596595 + MER21B LTR ERV1 19 862 -1 459 288 24 90 chr5 10490504 10490757 -192594775 - MIR SINE MIR -10 252 23 237 163 0 0 chr5 10490980 10491023 -192594509 + (TGGA)n Simple_repeat Simple_repeat 1 43 0 654 257 44 79 chr5 10491472 10491787 -192593745 + L2 LINE L2 2979 3282 -31 431 225 163 78 chr5 10491825 10491916 -192593616 + HAL1 LINE L1 1010 1092 -1415 2103 121 0 0 chr5 10491916 10492198 -192593334 + AluSx SINE Alu 1 282 -30 431 225 163 78 chr5 10492198 10492364 -192593168 + HAL1 LINE L1 1092 1289 -1218 592 249 92 18 chr5 10492405 10492634 -192592898 + LTR33 LTR ERVL 4 249 -272 247 219 16 31 chr5 10492995 10493059 -192592473 + LTR33 LTR ERVL 456 518 -3 373 273 74 34 chr5 10493071 10493247 -192592285 + HAL1 LINE L1 1336 1518 -989 549 288 47 56 chr5 10494708 10494962 -192590570 + MIR SINE MIR 3 246 -16 2084 174 16 8 chr5 10495508 10495894 -192589638 - L1MA7 LINE L1 -1 7709 7321 3367 33 5 18 chr5 10495896 10496293 -192589239 + L1PA4 LINE L1 5764 6155 0 6175 147 28 27 chr5 10496296 10497996 -192587536 - L1MA7 LINE L1 -373 7337 5644 377 178 46 36 chr5 10498016 10498407 -192587125 + (TATAA)n Simple_repeat Simple_repeat 1 394 0 8779 216 53 13 chr5 10498536 10500988 -192584544 - L1MA7 LINE L1 -1918 5647 3084 41 0 0 0 chr5 10501012 10501053 -192584479 + AT_rich Low_complexity Low_complexity 1 41 0 439 147 8 9 chr5 10501059 10501168 -192584364 - L1M2 LINE L1 -513 5778 5597 2291 48 4 0 chr5 10501168 10501436 -192584096 - L1PA5 LINE L1 0 6154 5886 517 111 0 0 chr5 10501541 10501613 -192583919 - AluS SINE Alu -8 303 232 2017 158 0 0 chr5 10501656 10501960 -192583572 - AluSx SINE Alu -8 304 1 886 303 27 30 chr5 10502470 10502800 -192582732 - LTR16A LTR ERVL 0 450 122 2183 178 11 13 chr5 10504392 10504768 -192580764 - THE1C LTR MaLR 0 375 1 379 288 65 51 chr5 10505471 10506038 -192579494 + L1ME LINE L1 5257 5856 -265 232 308 0 0 chr5 10506201 10506266 -192579266 + A-rich Low_complexity Low_complexity 1 65 0 297 355 0 0 chr5 10509686 10509793 -192575739 + L3b LINE CR1 1249 1355 -228 3622 201 47 17 chr5 10511066 10511384 -192574148 - L1MB7 LINE L1 -30 6154 5847 1207 144 55 15 chr5 10511384 10511586 -192573946 - MER6B DNA MER2_type 0 210 1 3622 201 47 17 chr5 10511586 10512238 -192573294 - L1MB7 LINE L1 -337 5847 5147 238 214 0 0 chr5 10512272 10512314 -192573218 - MER106B DNA MER1_type 0 1059 1018 581 215 90 42 chr5 10512335 10512479 -192573053 - MER106B DNA MER1_type -908 151 1 215 170 43 0 chr5 10513948 10513995 -192571537 + CT-rich Low_complexity Low_complexity 1 49 0 2099 152 0 0 chr5 10514897 10515200 -192570332 - AluSx SINE Alu -9 303 1 630 78 0 0 chr5 10515508 10515585 -192569947 + MADE1 DNA Mariner 4 80 0 9116 76 26 1 chr5 10516466 10517621 -192567911 + HERVL LTR ERVL 2047 3230 -2424 14144 72 6 17 chr5 10517626 10519448 -192566084 + HERVL LTR ERVL 3503 5304 -350 875 282 109 30 chr5 10519480 10520023 -192565509 - L1MB7 LINE L1 -1741 4405 3820 538 333 143 28 chr5 10520094 10520781 -192564751 - L1MEc LINE L1 -4131 2432 1667 221 29 0 57 chr5 10520793 10520828 -192564704 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 214 125 42 0 chr5 10520860 10520908 -192564624 + (TA)n Simple_repeat Simple_repeat 1 50 0 236 330 18 0 chr5 10520908 10521020 -192564512 - L1MEc LINE L1 -4899 1485 1372 1177 227 139 17 chr5 10521870 10522013 -192563519 + MSTD LTR MaLR 2 126 -270 2231 120 3 0 chr5 10522013 10522314 -192563218 + AluSx SINE Alu 1 302 -10 1177 227 139 17 chr5 10522314 10522522 -192563010 + MSTD LTR MaLR 126 396 0 329 271 232 13 chr5 10523249 10523404 -192562128 + MIR SINE MIR 57 245 -17 208 356 0 14 chr5 10523792 10523865 -192561667 - MIR SINE MIR -169 93 22 345 194 0 0 chr5 10524053 10524115 -192561417 + FLAM_A SINE Alu 71 132 -1 36 0 0 0 chr5 10524115 10524151 -192561381 + AT_rich Low_complexity Low_complexity 1 36 0 204 67 0 0 chr5 10524151 10524181 -192561351 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 863 169 0 26 chr5 10524186 10524199 -192561333 + AluJo SINE Alu 123 135 -177 2071 118 35 3 chr5 10524199 10524487 -192561045 + AluSx SINE Alu 1 297 -15 863 169 0 26 chr5 10524487 10524616 -192560916 + AluJo SINE Alu 135 263 -49 249 83 0 0 chr5 10524616 10524652 -192560880 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1385 176 77 35 chr5 10524847 10525159 -192560373 + MLT1A1 LTR MaLR 39 363 -2 648 218 292 9 chr5 10526191 10526786 -192558746 + LTR50 LTR ERVL 9 794 -1 2010 233 45 11 chr5 10526828 10527271 -192558261 + MLT1C LTR MaLR 1 458 -9 348 252 53 30 chr5 10527496 10527627 -192557905 + LTR16A LTR ERVL 233 366 -84 2188 97 3 7 chr5 10528637 10528925 -192556607 - AluSq SINE Alu -13 300 14 25 31 0 0 chr5 10529101 10529133 -192556399 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr5 10530107 10530136 -192555396 + AT_rich Low_complexity Low_complexity 1 29 0 670 211 28 22 chr5 10530587 10530767 -192554765 + L1ME3 LINE L1 4424 4604 -1542 307 233 207 9 chr5 10530787 10530903 -192554629 - L1M4 LINE L1 -1524 4622 4484 442 245 161 10 chr5 10531055 10531247 -192554285 - L1M4 LINE L1 -2846 3300 3080 5502 150 45 15 chr5 10531256 10531518 -192554014 + L1PB1 LINE L1 4883 5136 -1015 2198 107 0 41 chr5 10531518 10531836 -192553696 - AluSg SINE Alu -5 305 1 5502 150 45 15 chr5 10531836 10532738 -192552794 + L1PB1 LINE L1 5136 6150 -1 1620 229 103 63 chr5 10532802 10533552 -192551980 + L1ME3 LINE L1 5298 6077 -85 217 311 54 0 chr5 10533615 10533689 -192551843 + L2 LINE L2 2966 3043 -229 288 141 55 16 chr5 10534369 10534497 -192551035 + (TA)n Simple_repeat Simple_repeat 2 134 0 242 211 37 28 chr5 10534527 10534636 -192550896 + (TA)n Simple_repeat Simple_repeat 1 110 0 1035 235 90 36 chr5 10534770 10535379 -192550153 + MER76 LTR ERV 3 682 -6 245 261 15 15 chr5 10536694 10536759 -192548773 - L2 LINE L2 -5 3267 3203 2513 119 107 20 chr5 10536844 10537238 -192548294 - MSTA LTR MaLR 0 428 1 2682 136 2 5 chr5 10537238 10537643 -192547889 - MSTA-int LTR MaLR 0 1651 1248 14486 154 50 12 chr5 10538054 10544054 -192541478 - L1PB1 LINE L1 -1 6866 634 1098 182 5 0 chr5 10544057 10544249 -192541283 - L1PB1 LINE L1 -6668 195 3 1777 148 14 11 chr5 10544276 10544554 -192540978 - AluSg SINE Alu -18 292 14 2274 102 54 23 chr5 10544884 10545237 -192540295 + THE1B LTR MaLR 1 364 0 11455 103 10 1 chr5 10545237 10546803 -192538729 + THE1B-int LTR MaLR 1 1580 0 2195 108 60 28 chr5 10546803 10547156 -192538376 + THE1B LTR MaLR 1 364 0 182 313 15 0 chr5 10547300 10547367 -192538165 + MIR3 SINE MIR 111 178 -30 285 291 3 11 chr5 10548453 10548554 -192536978 + MIR SINE MIR 20 121 -87 1763 214 63 0 chr5 10549430 10549808 -192535724 - MER57A LTR ERV1 -1 402 1 184 254 9 9 chr5 10550220 10550334 -192535198 + (TG)n Simple_repeat Simple_repeat 1 114 0 325 281 0 15 chr5 10550346 10550481 -192535051 + (TG)n Simple_repeat Simple_repeat 2 134 0 214 167 46 56 chr5 10552111 10552219 -192533313 + (TATAA)n Simple_repeat Simple_repeat 2 108 0 498 104 14 49 chr5 10552223 10552367 -192533165 + (TA)n Simple_repeat Simple_repeat 1 139 0 284 164 0 82 chr5 10553292 10553365 -192532167 - MLT2B1 LTR ERVL 0 520 454 970 243 58 29 chr5 10553379 10553692 -192531840 + MER2 DNA MER2_type 4 325 -20 324 0 0 0 chr5 10553706 10553742 -192531790 + (CA)n Simple_repeat Simple_repeat 2 37 0 186 43 0 0 chr5 10553829 10553852 -192531680 + (A)n Simple_repeat Simple_repeat 1 23 0 2087 244 30 38 chr5 10553897 10554469 -192531063 + MER90 LTR ERV1 5 573 -41 1847 207 11 3 chr5 10554469 10554831 -192530701 - MLT1A1 LTR MaLR 0 365 1 2087 244 30 38 chr5 10554831 10554869 -192530663 + MER90 LTR ERV1 573 610 -4 217 302 54 39 chr5 10555038 10555167 -192530365 - L2 LINE L2 -256 3057 2927 2253 108 0 0 chr5 10555555 10555842 -192529690 - AluSx SINE Alu -25 287 1 21 36 0 0 chr5 10555972 10556000 -192529532 + AT_rich Low_complexity Low_complexity 1 28 0 781 239 91 0 chr5 10556127 10556357 -192529175 - MIR SINE MIR 0 262 12 21 0 0 0 chr5 10557326 10557347 -192528185 + AT_rich Low_complexity Low_complexity 1 21 0 547 125 0 0 chr5 10557825 10557905 -192527627 + MADE1 DNA Mariner 1 80 0 180 295 16 0 chr5 10558028 10558089 -192527443 + L2 LINE L2 2691 2752 -562 935 214 45 67 chr5 10558145 10558458 -192527074 + MLT1B LTR MaLR 85 390 0 205 229 0 49 chr5 10559086 10559147 -192526385 + CT-rich Low_complexity Low_complexity 1 58 0 214 306 74 8 chr5 10559499 10559620 -192525912 - L2 LINE L2 -1 3312 3184 190 308 33 0 chr5 10560511 10560602 -192524930 - MIR SINE MIR -120 142 49 2284 107 0 0 chr5 10562248 10562558 -192522974 - AluSx SINE Alu -2 310 1 608 262 29 14 chr5 10563524 10563734 -192521798 - MER20 DNA MER1_type -3 216 4 817 229 124 1 chr5 10565199 10565424 -192520108 - MLT1D LTR MaLR 0 505 226 1004 138 0 0 chr5 10565458 10565603 -192519929 + AluSg/x SINE Alu 135 279 -33 261 0 0 0 chr5 10565604 10565633 -192519899 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 434 183 17 126 chr5 10565650 10565724 -192519808 - MLT1D LTR MaLR -349 156 110 1999 194 3 6 chr5 10565724 10566090 -192519442 + MLT1A1 LTR MaLR 1 365 0 434 183 17 126 chr5 10566090 10566190 -192519342 - MLT1D LTR MaLR -395 110 1 558 299 7 0 chr5 10567076 10567220 -192518312 - MIR SINE MIR -105 157 13 28 29 0 0 chr5 10569035 10569070 -192516462 + AT_rich Low_complexity Low_complexity 1 35 0 3364 235 40 23 chr5 10569288 10570071 -192515461 - L1ME1 LINE L1 -49 6117 5327 2135 140 0 3 chr5 10570071 10570378 -192515154 + AluSg SINE Alu 1 306 -4 3364 235 40 23 chr5 10570378 10570530 -192515002 - L1ME1 LINE L1 -839 5327 5179 1416 207 155 17 chr5 10570530 10570830 -192514702 + MSTD LTR MaLR 1 357 -39 2740 126 34 0 chr5 10570830 10571244 -192514288 - MSTA LTR MaLR 0 428 1 1416 207 155 17 chr5 10571244 10571291 -192514241 + MSTD LTR MaLR 357 396 0 2015 255 48 14 chr5 10571335 10572144 -192513388 - L1ME1 LINE L1 -1025 5121 4285 1284 19 0 37 chr5 10572211 10572373 -192513159 - L1PA4 LINE L1 0 6155 6000 1532 6 0 0 chr5 10573491 10573658 -192511874 - L1PA4 LINE L1 -212 5943 5777 1750 20 0 0 chr5 10573658 10573852 -192511680 + L1PA4 LINE L1 5956 6153 -2 292 250 144 47 chr5 10574164 10574337 -192511195 - MLT1H1 LTR MaLR -1 554 354 4440 98 21 2 chr5 10574361 10574975 -192510557 - MER41B LTR ERV1 -9 626 1 265 297 93 33 chr5 10575098 10575267 -192510265 - MLT1H1 LTR MaLR -290 265 76 753 268 13 31 chr5 10576384 10576445 -192509087 - MER58A DNA MER1_type -2196 224 163 2255 147 50 21 chr5 10576445 10576882 -192508650 + LTR7 LTR ERV1 1 450 0 753 268 13 31 chr5 10576882 10577048 -192508484 - MER58A DNA MER1_type -2257 163 1 469 233 23 39 chr5 10577053 10577182 -192508350 - MER5A DNA MER1_type 0 189 63 345 315 47 7 chr5 10577578 10577727 -192507805 - MIR SINE MIR 0 262 108 294 295 11 0 chr5 10577733 10577828 -192507704 - MIR SINE MIR -90 172 77 2234 102 30 25 chr5 10579827 10580370 -192505162 - MER51A LTR ERV1 0 634 1 1503 199 192 12 chr5 10580373 10580780 -192504752 - MLT2B1 LTR ERVL -40 480 1 878 188 81 22 chr5 10582307 10582530 -192503002 - LTR34 LTR ERV1 0 699 464 1435 75 27 0 chr5 10582546 10582732 -192502800 - MER30 DNA MER1_type -34 196 6 2010 131 84 73 chr5 10582737 10582902 -192502630 - LTR34 LTR ERV1 -228 471 309 1686 141 80 29 chr5 10582902 10583178 -192502354 + AluSg SINE Alu 1 290 -20 2010 131 84 73 chr5 10583178 10583478 -192502054 - LTR34 LTR ERV1 -390 309 1 222 220 0 0 chr5 10584888 10584947 -192500585 + CT-rich Low_complexity Low_complexity 4 62 0 342 188 52 52 chr5 10584972 10585068 -192500464 - L2 LINE L2 -49 3264 3169 211 263 90 15 chr5 10585370 10585503 -192500029 - L2 LINE L2 -422 2892 2750 2647 108 11 0 chr5 10586666 10587037 -192498495 - THE1C LTR MaLR 0 375 1 480 256 0 0 chr5 10587843 10587999 -192497533 + (TG)n Simple_repeat Simple_repeat 1 156 0 423 262 0 0 chr5 10588021 10588166 -192497366 + (TG)n Simple_repeat Simple_repeat 2 146 0 352 296 0 0 chr5 10588189 10588304 -192497228 - MIR SINE MIR -128 134 20 573 256 45 5 chr5 10588855 10589054 -192496478 + L2 LINE L2 2950 3156 -157 1965 197 28 30 chr5 10589076 10589403 -192496129 - L1MB5 LINE L1 -17 6157 5830 2129 125 0 3 chr5 10589403 10589706 -192495826 - AluSx SINE Alu -10 302 1 1965 197 28 30 chr5 10589706 10589815 -192495717 - L1MB5 LINE L1 -344 5830 5722 5315 145 34 14 chr5 10589815 10590697 -192494835 - MER49 LTR ERV1 0 923 24 419 177 104 0 chr5 10590711 10590807 -192494725 - L1MB5 LINE L1 -449 5725 5620 26 30 0 0 chr5 10591177 10591210 -192494322 + AT_rich Low_complexity Low_complexity 1 33 0 385 260 10 102 chr5 10591452 10591648 -192493884 - MER5B DNA MER1_type 0 178 1 220 261 0 31 chr5 10591844 10591909 -192493623 + MER5A DNA MER1_type 8 70 -119 417 290 111 12 chr5 10592794 10592956 -192492576 + L3b LINE CR1 1343 1520 -63 318 240 50 0 chr5 10593203 10593303 -192492229 + GA-rich Low_complexity Low_complexity 1 105 0 3858 139 7 2 chr5 10594004 10594558 -192490974 + MER41D LTR ERV1 1 557 0 551 191 48 34 chr5 10595190 10595337 -192490195 + MER103 DNA DNA 2 150 -16 1533 239 12 6 chr5 10595623 10595954 -192489578 + MER58B DNA MER1_type 1 333 -8 1961 47 9 0 chr5 10595954 10596186 -192489346 - L1PA7 LINE L1 -475 5679 5446 3665 74 4 13 chr5 10596186 10596657 -192488875 + L1PA7 LINE L1 5685 6154 0 2125 122 0 3 chr5 10597550 10597844 -192487688 + AluSx SINE Alu 9 301 -11 2548 158 58 16 chr5 10599303 10599751 -192485781 - MLT1C LTR MaLR 0 467 1 308 358 42 0 chr5 10599852 10599972 -192485560 + MER5B DNA MER1_type 21 145 -33 6904 137 8 64 chr5 10600292 10600451 -192485081 - HSMAR2 DNA Mariner -118 1184 1018 2111 128 0 7 chr5 10600451 10600747 -192484785 + AluSx SINE Alu 1 294 -18 6904 137 8 64 chr5 10600747 10601840 -192483692 - HSMAR2 DNA Mariner -284 1018 2 6313 211 27 37 chr5 10602967 10605640 -192479892 - L1MC1 LINE L1 -314 6019 3376 2313 136 33 25 chr5 10606014 10606375 -192479157 - THE1B LTR MaLR 0 364 1 210 118 0 0 chr5 10608112 10608146 -192477386 + (GA)n Simple_repeat Simple_repeat 1 34 0 2197 259 28 44 chr5 10611268 10611562 -192473970 - L1MD3 LINE L1 -7 8035 7738 2171 113 0 0 chr5 10611562 10611845 -192473687 - AluSq SINE Alu -26 287 5 2197 259 28 44 chr5 10611845 10612335 -192473197 - L1MD3 LINE L1 -304 7738 7280 2623 125 8 3 chr5 10612335 10612696 -192472836 - THE1B LTR MaLR -1 363 1 2197 259 28 44 chr5 10612696 10612763 -192472769 - L1MD3 LINE L1 -762 7280 7213 23 33 0 0 chr5 10612885 10612915 -192472617 + AT_rich Low_complexity Low_complexity 1 30 0 364 297 71 23 chr5 10613494 10613760 -192471772 + L1M4 LINE L1 2697 2975 -3171 283 354 77 0 chr5 10614787 10614917 -192470615 + MIR SINE MIR 8 147 -115 419 143 0 0 chr5 10614917 10614980 -192470552 - MSTA LTR MaLR 0 428 366 * 647 160 0 25 chr5 10614967 10615086 -192470446 - MSTA LTR MaLR -312 116 1 2044 102 26 22 chr5 10615086 10615399 -192470133 - MSTA-int LTR MaLR 0 1580 1267 638 148 289 0 chr5 10615399 10615534 -192469998 - MSTA LTR MaLR -252 176 3 1302 177 262 12 chr5 10615545 10615703 -192469829 + MSTA LTR MaLR 19 136 -292 189 0 0 0 chr5 10615703 10615724 -192469808 + (TC)n Simple_repeat Simple_repeat 1 21 0 1302 177 262 12 chr5 10615724 10615893 -192469639 + MSTA LTR MaLR 136 428 0 268 242 67 67 chr5 10615893 10616013 -192469519 + MIR SINE MIR 143 262 0 258 262 24 0 chr5 10616213 10616297 -192469235 + L1ME LINE L1 52 137 -5933 1877 272 73 47 chr5 10616698 10618936 -192466596 + L1ME LINE L1 390 2693 -3387 * 2404 263 92 4 chr5 10618933 10619756 -192465776 - L1M4 LINE L1 -1342 4804 3909 465 293 6 13 chr5 10619751 10619908 -192465624 + L1ME1 LINE L1 6006 6161 -5 * 256 278 120 0 chr5 10621682 10621790 -192463742 + L1ME4a LINE L1 5999 6119 -2 235 217 17 17 chr5 10623713 10623773 -192461759 + MIR SINE MIR 86 145 -117 1351 226 43 48 chr5 10624009 10624381 -192461151 - MLT1A2 LTR MaLR -1 373 4 594 54 14 0 chr5 10627180 10627254 -192458278 - MER4B LTR ERV1 -8 602 528 636 311 34 0 chr5 10629147 10629356 -192456176 - MIR SINE MIR -45 217 2 234 0 0 0 chr5 10629364 10629390 -192456142 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 227 311 8 25 chr5 10629400 10629522 -192456010 + L1MEd LINE L1 53 172 -5947 744 182 8 8 chr5 10629938 10630070 -192455462 + FRAM SINE Alu 34 165 -11 396 0 0 0 chr5 10630519 10630563 -192454969 + (CA)n Simple_repeat Simple_repeat 2 45 0 250 311 56 28 chr5 10630970 10631150 -192454382 + L2 LINE L2 2775 2959 -355 205 305 102 0 chr5 10631082 10631200 -192454332 + MIR SINE MIR 59 188 -74 * 2283 73 20 3 chr5 10631787 10631907 -192453625 + AluY SINE Alu 1 118 -193 495 33 0 0 chr5 10631907 10631968 -192453564 + (CA)n Simple_repeat Simple_repeat 2 62 0 2283 73 20 3 chr5 10631968 10632147 -192453385 + AluY SINE Alu 118 305 -6 273 128 0 0 chr5 10632613 10632660 -192452872 + (CA)n Simple_repeat Simple_repeat 2 48 0 699 125 8 25 chr5 10634990 10635110 -192450422 + MER4D LTR ERV1 1 118 -785 * 3840 128 37 37 chr5 10635103 10635745 -192449787 - MER4D LTR ERV1 -90 782 141 307 259 82 0 chr5 10635756 10635841 -192449691 + MLT2B1 LTR ERVL 370 461 -59 3785 200 46 12 chr5 10635871 10636625 -192448907 + MLT-int LTR MaLR 1 780 -955 302 344 103 43 chr5 10636760 10637393 -192448139 + L2 LINE L2 2088 2758 -556 2529 142 61 0 chr5 10637558 10637953 -192447579 - MSTA LTR MaLR -9 419 1 600 279 83 10 chr5 10638692 10639007 -192446525 - L1ME3A LINE L1 -12 6158 5815 278 355 142 18 chr5 10639036 10639318 -192446214 + L3 LINE CR1 1258 1574 -3 1794 150 0 24 chr5 10640460 10640754 -192444778 - AluSx SINE Alu -15 297 11 232 125 0 42 chr5 10641671 10641719 -192443813 + LTR66 LTR ERVL 394 439 -171 391 231 22 52 chr5 10642563 10642697 -192442835 - Charlie7 DNA MER1_type -1927 685 556 231 380 0 0 chr5 10642755 10642826 -192442706 + L2 LINE L2 3143 3213 -59 375 311 40 13 chr5 10642876 10643027 -192442505 - L2 LINE L2 -224 3089 2935 302 229 19 57 chr5 10643040 10643145 -192442387 - Charlie7 DNA MER1_type -2088 524 424 1743 293 26 26 chr5 10643145 10643239 -192442293 - L1MEc LINE L1 -5646 750 657 1883 81 102 42 chr5 10643239 10643522 -192442010 + AluY SINE Alu 1 300 -11 1743 293 26 26 chr5 10643522 10644143 -192441389 - L1MEc LINE L1 -5738 658 35 277 313 75 0 chr5 10644259 10644393 -192441139 - Charlie7 DNA MER1_type -2208 404 261 985 257 168 32 chr5 10645457 10645932 -192439600 - L1ME2 LINE L1 -2 6162 5623 1436 316 36 30 chr5 10645933 10646334 -192439198 - MLT1G1 LTR MaLR -66 529 123 2136 191 14 3 chr5 10646334 10646691 -192438841 + MLT1A1 LTR MaLR 1 361 -4 1436 316 36 30 chr5 10646691 10646815 -192438717 - MLT1G1 LTR MaLR -472 123 1 1197 286 130 12 chr5 10647035 10647542 -192437990 + MLT1F1 LTR MaLR 1 567 0 301 228 65 22 chr5 10647868 10647960 -192437572 + MIR SINE MIR 119 214 -48 300 156 31 0 chr5 10649775 10649839 -192435693 - L1MA7 LINE L1 0 6291 6226 320 356 95 11 chr5 10650152 10650416 -192435116 - L1ME LINE L1 -5526 544 259 2630 208 65 50 chr5 10650724 10651321 -192434211 + MER82 DNA MER2_type 2 607 -46 300 300 36 70 chr5 10651443 10651773 -192433759 - L1MEc LINE L1 -5580 816 498 264 331 61 13 chr5 10652014 10652154 -192433378 - L1MEd LINE L1 -1610 4519 4387 2188 111 0 7 chr5 10652154 10652461 -192433071 - AluSg SINE Alu -5 305 1 264 331 61 13 chr5 10652461 10652631 -192432901 - L1MEd LINE L1 -1742 4387 4194 945 311 136 60 chr5 10652646 10653580 -192431952 - L1MEd LINE L1 -1979 4150 3288 1789 174 7 3 chr5 10653580 10653879 -192431653 + AluJb SINE Alu 1 300 -12 945 311 136 60 chr5 10653879 10654339 -192431193 - L1MEd LINE L1 -2841 3288 2864 2297 104 0 7 chr5 10654339 10654636 -192430896 + AluSg SINE Alu 1 295 -15 945 311 136 60 chr5 10654636 10654845 -192430687 - L1MEd LINE L1 -3265 2864 2425 35 83 0 0 chr5 10654852 10654936 -192430596 + AT_rich Low_complexity Low_complexity 1 84 0 303 246 49 55 chr5 10654971 10655064 -192430468 - L1MEd LINE L1 -3756 2373 2280 1096 224 121 44 chr5 10655064 10655403 -192430129 + MLT1A1 LTR MaLR 1 365 0 303 246 49 55 chr5 10655403 10655492 -192430040 - L1MEd LINE L1 -3849 2280 2192 283 86 0 0 chr5 10655900 10655935 -192429597 + THE1A LTR MaLR 321 355 0 * 816 113 8 6 chr5 10655921 10655935 -192429597 - MSTB LTR MaLR -292 136 124 12771 85 6 2 chr5 10655935 10657509 -192428023 + THE1B-int LTR MaLR 1 1580 0 2128 132 21 66 chr5 10657510 10657890 -192427642 + THE1B LTR MaLR 2 364 0 816 113 8 6 chr5 10657890 10658005 -192427527 - MSTB LTR MaLR -303 125 3 391 377 54 14 chr5 10658125 10658475 -192427057 - L1MEd LINE L1 -5472 647 284 2099 95 6 63 chr5 10658863 10659178 -192426354 - AluSq SINE Alu -12 301 5 417 271 46 30 chr5 10659193 10659427 -192426105 - L1MD3 LINE L1 0 8041 7823 318 269 175 18 chr5 10659530 10659701 -192425831 - L2 LINE L2 -970 2344 2147 199 0 0 61 chr5 10660277 10660310 -192425222 + (CA)n Simple_repeat Simple_repeat 2 32 0 1346 31 9 0 chr5 10661821 10662043 -192423489 + (CTCA)n Simple_repeat Simple_repeat 1 224 0 1558 164 4 14 chr5 10662703 10662978 -192422554 - AluJo SINE Alu -22 290 19 308 24 24 0 chr5 10663286 10663327 -192422205 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 496 269 86 0 chr5 10663734 10663920 -192421612 - LTR16C LTR ERVL -4 487 286 524 222 120 24 chr5 10664616 10664783 -192420749 + MLT1J2 LTR MaLR 1 183 -267 882 256 106 41 chr5 10664930 10665419 -192420113 - LTR33 LTR ERVL 0 521 1 189 299 37 65 chr5 10665844 10665951 -192419581 - L2 LINE L2 -15 3257 3154 2102 111 0 27 chr5 10666159 10666456 -192419076 + AluSg SINE Alu 1 289 -21 285 296 170 18 chr5 10667086 10667309 -192418223 - MIR SINE MIR -2 260 4 309 322 113 0 chr5 10667508 10667623 -192417909 - L2 LINE L2 0 3272 3145 216 67 0 0 chr5 10668174 10668204 -192417328 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr5 10669321 10669343 -192416189 + AT_rich Low_complexity Low_complexity 1 22 0 400 302 118 12 chr5 10669527 10669696 -192415836 + MIR SINE MIR 28 214 -48 191 186 34 34 chr5 10669982 10670041 -192415491 + MIR SINE MIR 87 145 -63 709 276 91 53 chr5 10670340 10670790 -192414742 + MLT1C LTR MaLR 1 467 0 774 290 81 39 chr5 10671024 10671358 -192414174 + L1PA15 LINE L1 408 755 -6032 15221 219 18 24 chr5 10671391 10676960 -192408572 + L1PA15 LINE L1 1262 6815 -1 1499 224 153 20 chr5 10677159 10677303 -192408229 - MLT1D LTR MaLR 0 505 381 186 71 0 0 chr5 10677303 10677331 -192408201 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1499 224 153 20 chr5 10677331 10677632 -192407900 - MLT1D LTR MaLR -124 381 1 1899 147 0 33 chr5 10678643 10678942 -192406590 + AluSx SINE Alu 1 289 -23 3061 169 60 3 chr5 10679388 10679955 -192405577 + MER6A DNA MER2_type 1 599 -6 237 314 19 38 chr5 10680298 10680403 -192405129 + MIR3 SINE MIR 12 114 -94 462 49 0 0 chr5 10680418 10680479 -192405053 + (TG)n Simple_repeat Simple_repeat 2 62 0 2131 108 3 7 chr5 10680498 10680793 -192404739 + AluSg1 SINE Alu 1 294 -15 2464 166 74 21 chr5 10680886 10681320 -192404212 + MSTB2 LTR MaLR 1 457 0 1057 228 58 67 chr5 10681669 10682189 -192403343 + MLT2D LTR ERVL 1 520 0 300 53 0 0 chr5 10682209 10682247 -192403285 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 299 245 19 19 chr5 10682756 10682862 -192402670 + (TA)n Simple_repeat Simple_repeat 2 107 0 673 254 0 0 chr5 10682879 10683005 -192402527 - FLAM_A SINE Alu -3 130 5 189 244 22 0 chr5 10683139 10683184 -192402348 + L2 LINE L2 3258 3303 -10 1672 158 34 4 chr5 10683726 10684041 -192401491 + AluSx SINE Alu 11 333 0 384 209 41 12 chr5 10684464 10684617 -192400915 - L1MA9 LINE L1 -7 6290 6021 21 57 0 0 chr5 10684880 10684915 -192400617 + AT_rich Low_complexity Low_complexity 1 35 0 538 362 33 9 chr5 10685647 10685984 -192399548 + L2 LINE L2 2026 2370 -944 395 287 47 16 chr5 10686082 10686211 -192399321 + MLT1J2 LTR MaLR 13 145 -305 244 241 19 0 chr5 10686293 10686347 -192399185 - L2 LINE L2 -2 3311 3257 325 306 59 41 chr5 10686541 10686711 -192398821 + MIR SINE MIR 7 179 -83 28 61 0 0 chr5 10687976 10688025 -192397507 + AT_rich Low_complexity Low_complexity 1 49 0 322 260 52 0 chr5 10689447 10689543 -192395989 - MER5A DNA MER1_type -80 109 9 521 341 81 47 chr5 10691208 10691309 -192394223 + L2 LINE L2 1791 1887 -1427 1807 148 121 12 chr5 10691309 10691647 -192393885 - THE1C LTR MaLR 0 375 1 521 341 81 47 chr5 10691647 10692260 -192393272 + L2 LINE L2 1887 2530 -784 200 293 88 66 chr5 10692910 10693091 -192392441 + L2 LINE L2 3033 3217 -96 327 322 11 0 chr5 10694779 10694869 -192390663 + MIR3 SINE MIR 75 165 -43 1619 177 67 0 chr5 10694932 10695215 -192390317 - AluJb SINE Alu -2 310 9 191 266 0 47 chr5 10695260 10695324 -192390208 - L2 LINE L2 -4 3268 3208 1455 182 78 4 chr5 10696477 10696746 -192388786 + AluJb SINE Alu 10 298 -14 1253 223 56 68 chr5 10696944 10697408 -192388124 + MLT2D LTR ERVL 1 454 -66 2518 123 62 10 chr5 10697528 10697928 -192387604 + MSTA LTR MaLR 1 421 -7 1465 235 51 8 chr5 10698486 10698860 -192386672 - MLT1C LTR MaLR -75 392 3 22 0 0 0 chr5 10700486 10700508 -192385024 + AT_rich Low_complexity Low_complexity 1 22 0 1517 239 13 32 chr5 10701150 10701522 -192384010 + MLT1A1 LTR MaLR 1 365 0 2079 170 101 0 chr5 10701667 10702055 -192383477 + MSTA LTR MaLR 2 428 0 417 291 35 62 chr5 10703265 10703523 -192382009 - LTR16B LTR ERVL 0 464 214 616 292 62 62 chr5 10703730 10704134 -192381398 - L2 LINE L2 -101 3212 2809 1974 196 65 128 chr5 10704165 10704906 -192380626 - LTR8A LTR ERV1 0 727 34 1098 187 57 30 chr5 10705163 10705393 -192380139 + MER46A DNA MER2_type 1 236 0 21 36 0 0 chr5 10705814 10705842 -192379690 + AT_rich Low_complexity Low_complexity 1 28 0 183 315 62 23 chr5 10706019 10706149 -192379383 - MIR SINE MIR -114 148 14 295 291 51 17 chr5 10706384 10706603 -192378929 - L1 LINE L1 -1687 4459 4234 1092 212 77 90 chr5 10706871 10707314 -192378218 + MLT1D LTR MaLR 69 505 0 314 182 0 0 chr5 10707787 10707842 -192377690 - MLT1K LTR MaLR -20 568 514 555 117 0 36 chr5 10708145 10708256 -192377276 + (GGAA)n Simple_repeat Simple_repeat 2 108 0 195 42 0 0 chr5 10708479 10708503 -192377029 + (TAA)n Simple_repeat Simple_repeat 1 24 0 185 283 0 0 chr5 10708503 10708549 -192376983 - L2 LINE L2 -17 3255 3210 1937 153 134 28 chr5 10708574 10708836 -192376696 + MSTA LTR MaLR 1 319 -109 1902 144 76 51 chr5 10708836 10709191 -192376341 - THE1B LTR MaLR 0 364 1 1937 153 134 28 chr5 10709191 10709315 -192376217 + MSTA LTR MaLR 319 428 0 555 271 0 0 chr5 10709336 10709458 -192376074 - MIR SINE MIR -129 133 12 229 323 96 0 chr5 10709496 10709694 -192375838 - L1 LINE L1 -2168 3978 3762 2784 153 39 37 chr5 10710295 10710483 -192375049 + L1MB3 LINE L1 5606 5792 -391 2223 115 0 0 chr5 10710483 10710787 -192374745 - AluSc SINE Alu -5 304 1 2784 153 39 37 chr5 10710787 10711139 -192374393 + L1MB3 LINE L1 5792 6147 -36 182 330 124 0 chr5 10711171 10711268 -192374264 - MIR SINE MIR -62 146 38 2453 165 19 36 chr5 10711298 10711840 -192373692 + LTR27 LTR ERV1 3 501 0 1046 254 70 53 chr5 10712033 10712392 -192373140 - MLT1A1 LTR MaLR 0 365 1 508 107 63 60 chr5 10713673 10714109 -192371423 + GA-rich Low_complexity Low_complexity 1 437 0 253 158 63 0 chr5 10714142 10714237 -192371295 + (CAGGG)n Simple_repeat Simple_repeat 2 102 0 226 232 63 11 chr5 10714241 10714336 -192371196 + GA-rich Low_complexity Low_complexity 1 100 0 438 203 58 0 chr5 10714678 10715010 -192370522 + GA-rich Low_complexity Low_complexity 1 351 0 2173 143 38 41 chr5 10716816 10717181 -192368351 - THE1B LTR MaLR 0 364 1 345 248 90 28 chr5 10717220 10717365 -192368167 + MIR SINE MIR 61 214 -48 5571 236 72 38 chr5 10717790 10718484 -192367048 + L1MB8 LINE L1 14 683 -6276 315 0 0 0 chr5 10718484 10718519 -192367013 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5571 236 72 38 chr5 10718519 10719565 -192365967 + L1MB8 LINE L1 683 1848 -5111 2201 104 3 0 chr5 10719565 10719862 -192365670 + AluSc SINE Alu 1 298 -11 5571 236 72 38 chr5 10719862 10720385 -192365147 + L1MB8 LINE L1 1848 2352 -4607 366 107 0 0 chr5 10720388 10720444 -192365088 + (CA)n Simple_repeat Simple_repeat 2 57 0 10175 226 69 31 chr5 10720639 10725024 -192360508 + L1MB8 LINE L1 2471 6977 -12 24 32 0 0 chr5 10728606 10728637 -192356895 + AT_rich Low_complexity Low_complexity 1 31 0 271 273 30 20 chr5 10729541 10729640 -192355892 - L3 LINE CR1 -419 1158 1059 1707 236 25 9 chr5 10730203 10730594 -192354938 - MSTD LTR MaLR 0 396 9 588 157 50 41 chr5 10730749 10730870 -192354662 - MLT1A2 LTR MaLR -54 320 199 186 298 12 48 chr5 10731426 10731510 -192354022 - L2 LINE L2 0 3313 3233 1671 266 196 42 chr5 10731847 10733424 -192352108 + HAL1 LINE L1 250 2069 -438 1323 154 0 5 chr5 10733432 10733646 -192351886 + AluSg/x SINE Alu 87 299 -13 243 223 62 77 chr5 10733726 10733856 -192351676 + HAL1 LINE L1 2221 2348 -159 * 468 277 15 0 chr5 10733855 10733985 -192351547 + L1MC5 LINE L1 6698 6829 -1132 903 205 58 99 chr5 10734067 10734384 -192351148 + L1MC5 LINE L1 6858 7157 -804 2486 78 0 0 chr5 10734384 10734690 -192350842 - AluY SINE Alu -5 306 1 903 205 58 99 chr5 10734690 10734767 -192350765 + L1MC5 LINE L1 7157 7236 -725 225 172 78 16 chr5 10735100 10735164 -192350368 + LTR13 LTR ERVK 648 715 -292 4384 112 8 16 chr5 10736394 10737011 -192348521 - MER51A LTR ERV1 0 634 23 1187 331 141 14 chr5 10737656 10738324 -192347208 - L2 LINE L2 -518 2796 2044 377 274 17 28 chr5 10738517 10738696 -192346836 + (CATG)n Simple_repeat Simple_repeat 2 178 0 703 233 181 44 chr5 10739111 10739449 -192346083 - MLT1F1 LTR MaLR -1 541 138 1757 142 36 33 chr5 10739449 10739780 -192345752 - L1MA4A LINE L1 -6 6297 5966 703 233 181 44 chr5 10739780 10739939 -192345593 - MLT1F1 LTR MaLR -404 138 2 225 65 0 0 chr5 10741674 10741705 -192343827 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2305 82 0 0 chr5 10741708 10741989 -192343543 - AluY SINE Alu -30 281 1 2320 78 3 3 chr5 10742787 10743071 -192342461 + AluSp SINE Alu 1 284 -29 185 0 40 0 chr5 10743088 10743113 -192342419 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 306 173 29 0 chr5 10744626 10744775 -192340757 + (TA)n Simple_repeat Simple_repeat 1 153 0 1543 194 0 7 chr5 10746217 10746525 -192339007 + AluJb SINE Alu 1 306 0 210 277 71 45 chr5 10748094 10748249 -192337283 + MIR3 SINE MIR 50 208 0 282 189 11 67 chr5 10748386 10748476 -192337056 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 200 311 0 0 chr5 10749535 10749580 -192335952 - L2 LINE L2 -89 3183 3139 180 0 0 0 chr5 10749606 10749626 -192335906 + (T)n Simple_repeat Simple_repeat 1 20 0 559 203 27 27 chr5 10749916 10750064 -192335468 + LTR67 LTR ERVL 407 554 -3 327 177 0 0 chr5 10750943 10751005 -192334527 + CT-rich Low_complexity Low_complexity 2 63 0 234 245 0 0 chr5 10752653 10752702 -192332830 + (TCCA)n Simple_repeat Simple_repeat 2 50 0 1168 247 150 71 chr5 10753290 10753864 -192331668 + MLT1E2 LTR MaLR 6 624 -2 1346 203 17 24 chr5 10755225 10755521 -192330011 - AluJo SINE Alu -7 295 2 21 0 0 0 chr5 10756244 10756265 -192329267 + AT_rich Low_complexity Low_complexity 1 21 0 214 338 84 33 chr5 10756591 10756804 -192328728 + L3 LINE CR1 653 876 -701 338 234 16 81 chr5 10760015 10760139 -192325393 - L2 LINE L2 0 3313 3198 581 239 28 35 chr5 10760261 10760403 -192325129 + L1MEc LINE L1 431 571 -5825 1771 149 0 31 chr5 10760467 10760818 -192324714 + AluSg SINE Alu 1 342 0 689 274 89 35 chr5 10760829 10761347 -192324185 + L1MEc LINE L1 1315 1860 -4536 472 167 0 12 chr5 10761351 10761435 -192324097 - AluSg/x SINE Alu -20 289 207 1516 150 75 4 chr5 10761451 10761704 -192323828 - AluSx SINE Alu -41 271 1 2417 64 3 22 chr5 10761711 10762022 -192323510 - AluY SINE Alu -6 305 1 1416 111 0 5 chr5 10762150 10762348 -192323184 + AluSg/x SINE Alu 116 312 0 1530 251 52 34 chr5 10762348 10762906 -192322626 + L1MEc LINE L1 2326 2893 -3322 1299 309 108 41 chr5 10762907 10763891 -192321641 - L2 LINE L2 -293 3020 1971 263 319 88 0 chr5 10764160 10764251 -192321281 + MLT1I LTR MaLR 138 236 -173 404 19 38 0 chr5 10764842 10764895 -192320637 - MLT2A2 LTR ERVL 0 453 399 324 167 12 24 chr5 10764895 10764979 -192320553 + (CATATA)n Simple_repeat Simple_repeat 5 87 0 2761 115 0 10 chr5 10764979 10765363 -192320169 - MLT2A2 LTR ERVL -73 380 1 270 0 0 0 chr5 10766541 10766571 -192318961 + (CA)n Simple_repeat Simple_repeat 2 31 0 216 247 194 0 chr5 10766639 10766732 -192318800 - L2 LINE L2 -2 3311 3201 2642 105 13 8 chr5 10767489 10767862 -192317670 - THE1C LTR MaLR 0 375 1 26 30 0 0 chr5 10768430 10768463 -192317069 + AT_rich Low_complexity Low_complexity 1 33 0 604 329 74 18 chr5 10768866 10769310 -192316222 - L1MC/D LINE L1 -2026 5782 5314 402 337 111 49 chr5 10769311 10770071 -192315461 - L1MC/D LINE L1 -866 5280 4474 188 176 28 28 chr5 10770160 10770268 -192315264 + (TATAA)n Simple_repeat Simple_repeat 5 112 0 210 211 0 28 chr5 10770271 10770342 -192315190 + (TTTA)n Simple_repeat Simple_repeat 2 70 0 313 287 43 64 chr5 10770545 10770827 -192314705 - L1MC/D LINE L1 -2022 4124 3849 24 67 0 0 chr5 10771468 10771513 -192314019 + AT_rich Low_complexity Low_complexity 1 45 0 358 291 89 58 chr5 10771614 10771927 -192313605 - L1ME4a LINE L1 -174 5947 5625 282 73 0 0 chr5 10772025 10772066 -192313466 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 768 287 69 28 chr5 10772173 10772519 -192313013 - MLT1I LTR MaLR -2 407 42 189 0 0 0 chr5 10772519 10772540 -192312992 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 768 287 69 28 chr5 10772540 10772583 -192312949 - MLT1I LTR MaLR -367 42 2 214 191 0 0 chr5 10772762 10772804 -192312728 + (TAA)n Simple_repeat Simple_repeat 1 42 0 27 81 0 0 chr5 10773120 10773182 -192312350 + AT_rich Low_complexity Low_complexity 1 62 0 3584 119 6 24 chr5 10773345 10773882 -192311650 - MER1A DNA MER1_type 0 527 1 2443 75 0 0 chr5 10774044 10774336 -192311196 - AluY SINE Alu -19 292 1 1918 153 20 0 chr5 10775394 10775689 -192309843 + AluSx SINE Alu 1 301 -11 336 289 67 21 chr5 10776697 10776891 -192308641 - LTR33 LTR ERVL -304 217 15 360 0 0 0 chr5 10777751 10777791 -192307741 + (CA)n Simple_repeat Simple_repeat 2 41 0 223 239 22 43 chr5 10778631 10778723 -192306809 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 556 301 36 18 chr5 10778807 10779026 -192306506 - LTR16C LTR ERVL 0 491 269 1965 157 7 0 chr5 10779584 10779889 -192305643 - AluSx SINE Alu -5 307 1 272 217 0 12 chr5 10783354 10783437 -192302095 + GA-rich Low_complexity Low_complexity 4 85 0 491 313 124 17 chr5 10787701 10787992 -192297540 - L2 LINE L2 0 3313 2992 325 299 0 9 chr5 10789744 10789851 -192295681 - MIR3 SINE MIR -16 192 87 374 311 11 33 chr5 10790533 10790617 -192294915 + GA-rich Low_complexity Low_complexity 3 87 -91 2092 115 4 4 chr5 10790617 10790920 -192294612 + AluSc SINE Alu 1 303 0 374 311 11 33 chr5 10790920 10791012 -192294520 + GA-rich Low_complexity Low_complexity 87 178 0 331 182 26 0 chr5 10792225 10792302 -192293230 - MER116 DNA Mariner -1 79 1 1366 170 13 9 chr5 10792630 10792860 -192292672 + MLT2B3 LTR ERVL 1 231 -323 326 220 10 0 chr5 10792860 10792960 -192292572 + CT-rich Low_complexity Low_complexity 2 102 0 566 163 11 0 chr5 10792974 10793066 -192292466 + MLT2B3 LTR ERVL 235 327 -227 478 211 8 29 chr5 10793412 10793661 -192291871 + GA-rich Low_complexity Low_complexity 1 243 0 421 281 90 53 chr5 10795132 10795872 -192289660 + L1MEd LINE L1 756 1516 -4613 2036 47 0 28 chr5 10796028 10796283 -192289249 + AluY SINE Alu 64 311 0 360 64 0 0 chr5 10796283 10796330 -192289202 + (TA)n Simple_repeat Simple_repeat 1 47 0 1510 267 100 28 chr5 10796682 10797618 -192287914 + L1MEd LINE L1 2113 3116 -3013 469 113 0 0 chr5 10797632 10797694 -192287838 + AluJ/FLAM SINE Alu 1 62 -250 670 120 0 0 chr5 10798676 10798776 -192286756 - AluSg/x SINE Alu -5 307 208 187 348 130 36 chr5 10798932 10799070 -192286462 - L2 LINE L2 -4 3268 3118 2034 39 0 0 chr5 10799551 10799781 -192285751 - L1PA5 LINE L1 -3 6151 5922 251 242 207 60 chr5 10799957 10800029 -192285503 + HAL1 LINE L1 814 874 -1633 195 42 0 0 chr5 10800029 10800053 -192285479 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 251 242 207 60 chr5 10800053 10800294 -192285238 + HAL1 LINE L1 874 1173 -1334 1251 246 153 25 chr5 10800398 10800837 -192284695 + MLT1D LTR MaLR 3 497 -8 244 263 132 9 chr5 10800852 10800966 -192284566 + HAL1 LINE L1 1276 1403 -1104 587 207 8 0 chr5 10800968 10801089 -192284443 - MSTD LTR MaLR 0 396 275 202 264 128 111 chr5 10801411 10801764 -192283768 - L2 LINE L2 -396 2918 2560 1586 199 38 0 chr5 10803203 10803320 -192282212 + AluJo SINE Alu 1 112 -200 198 0 0 0 chr5 10803320 10803342 -192282190 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1586 199 38 0 chr5 10803342 10803511 -192282021 + AluJo SINE Alu 112 298 -14 974 258 97 52 chr5 10803579 10804017 -192281515 + MLT1C LTR MaLR 5 467 0 304 130 0 0 chr5 10804293 10804339 -192281193 - MADE1 DNA Mariner 0 80 35 2982 199 90 55 chr5 10804724 10805522 -192280010 + LTR1B LTR ERV1 1 826 0 2411 169 0 5 chr5 10805733 10806100 -192279432 - MLT1A1 LTR MaLR 0 365 1 189 375 116 0 chr5 10806596 10806708 -192278824 + L2 LINE L2 3126 3250 -22 1887 129 30 23 chr5 10806752 10807055 -192278477 + AluSx SINE Alu 1 305 -7 1805 142 0 0 chr5 10807055 10807308 -192278224 + AluSx SINE Alu 1 253 -59 402 21 0 0 chr5 10807313 10807360 -192278172 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 485 333 101 16 chr5 10808023 10808341 -192277191 - MLT1L LTR MaLR -44 571 227 560 77 188 51 chr5 10808346 10808444 -192277088 + L1MA7 LINE L1 6156 6274 -17 2056 132 48 38 chr5 10808444 10808815 -192276717 - THE1C LTR MaLR 0 375 1 560 77 188 51 chr5 10808815 10808833 -192276699 + L1MA7 LINE L1 6274 6288 -3 259 179 18 0 chr5 10809228 10809284 -192276248 + LTR33A LTR ERVL 467 523 0 479 271 147 66 chr5 10810073 10810556 -192274976 + LTR33A LTR ERVL 1 522 -1 21 57 0 0 chr5 10811105 10811140 -192274392 + AT_rich Low_complexity Low_complexity 1 35 0 217 135 27 0 chr5 10811399 10811436 -192274096 + CT-rich Low_complexity Low_complexity 2 39 0 269 218 0 69 chr5 10811664 10811751 -192273781 - L1MC4 LINE L1 -1321 6721 6641 180 286 71 12 chr5 10811798 10811882 -192273650 + MIR SINE MIR 97 185 -77 305 138 0 17 chr5 10813222 10813280 -192272252 + (TAA)n Simple_repeat Simple_repeat 3 59 0 250 318 55 46 chr5 10813660 10813847 -192271685 + MIR SINE MIR 9 192 -67 2281 108 0 0 chr5 10814395 10814700 -192270832 + AluSq SINE Alu 1 305 -8 23 0 0 0 chr5 10814834 10814857 -192270675 + AT_rich Low_complexity Low_complexity 1 23 0 662 291 167 25 chr5 10816510 10817202 -192268330 + L2 LINE L2 2360 3147 -166 249 180 0 0 chr5 10817933 10817983 -192267549 + (TATG)n Simple_repeat Simple_repeat 2 51 0 4877 214 24 15 chr5 10818064 10819885 -192265647 - L1P LINE L1 -3638 3159 1326 11586 214 18 29 chr5 10819888 10821120 -192264412 + L1P LINE L1 3152 4397 -2400 1914 141 0 7 chr5 10821120 10821442 -192264090 + AluY SINE Alu 1 320 0 11586 214 18 29 chr5 10821442 10822973 -192262559 + L1P LINE L1 4397 5884 -913 1220 124 27 0 chr5 10822973 10823158 -192262374 + L1PA15 LINE L1 5955 6144 -21 636 335 129 30 chr5 10823664 10824192 -192261340 - L2 LINE L2 -223 3049 2464 410 150 0 0 chr5 10824808 10824868 -192260664 + THE1B LTR MaLR 305 364 0 * 1240 161 187 22 chr5 10824868 10825130 -192260402 - MSTA LTR MaLR -122 306 1 185 283 0 0 chr5 10825155 10825201 -192260331 + L2 LINE L2 3210 3255 -17 195 42 0 0 chr5 10825201 10825225 -192260307 + (TTA)n Simple_repeat Simple_repeat 1 24 0 555 117 0 36 chr5 10825448 10825559 -192259973 + (TTCC)n Simple_repeat Simple_repeat 2 108 0 314 182 0 0 chr5 10825862 10825917 -192259615 + MLT1K LTR MaLR 514 568 -20 1005 205 75 110 chr5 10826390 10826843 -192258689 - MLT1D LTR MaLR 0 505 69 295 291 51 17 chr5 10827111 10827330 -192258202 + L1M4 LINE L1 4234 4459 -1687 183 315 62 23 chr5 10827566 10827696 -192257836 + MIR SINE MIR 14 148 -114 21 36 0 0 chr5 10827873 10827901 -192257631 + AT_rich Low_complexity Low_complexity 1 28 0 1084 191 57 30 chr5 10828322 10828552 -192256980 - MER46A DNA MER2_type 0 236 1 1976 195 61 127 chr5 10828809 10829552 -192255980 + LTR8A LTR ERV1 34 727 0 600 295 62 62 chr5 10829583 10829987 -192255545 + L2 LINE L2 2809 3212 -101 417 291 35 62 chr5 10830194 10830452 -192255080 + LTR16B LTR ERVL 214 464 0 2079 170 101 0 chr5 10831663 10832051 -192253481 - MSTA LTR MaLR 0 428 2 1489 242 13 32 chr5 10832196 10832568 -192252964 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr5 10833210 10833232 -192252300 + AT_rich Low_complexity Low_complexity 1 22 0 1429 241 51 8 chr5 10834861 10835235 -192250297 + MLT1C LTR MaLR 3 392 -75 3497 229 95 19 chr5 10836508 10837698 -192247834 - L1M4 LINE L1 -821 5325 4045 443 303 152 28 chr5 10845042 10845332 -192240200 - L2 LINE L2 -945 2369 2044 372 278 12 29 chr5 10845529 10845702 -192239830 + (CATG)n Simple_repeat Simple_repeat 2 171 0 331 240 10 83 chr5 10845730 10845922 -192239610 + (CATG)n Simple_repeat Simple_repeat 2 179 0 569 325 132 45 chr5 10846565 10847358 -192238174 + L1MC/D LINE L1 4419 5280 -866 243 285 73 28 chr5 10847359 10847538 -192237994 + L1MC/D LINE L1 5314 5500 -2308 920 206 77 111 chr5 10847896 10848348 -192237184 + MLT1D LTR MaLR 69 505 0 232 189 38 0 chr5 10848805 10848858 -192236674 - MLT1K LTR MaLR -20 568 514 459 131 0 30 chr5 10849153 10849252 -192236280 + (GGAA)n Simple_repeat Simple_repeat 2 97 0 333 272 95 55 chr5 10849596 10850220 -192235312 + L1MDa LINE L1 1279 1927 -4613 1929 48 0 36 chr5 10850377 10850620 -192234912 + AluY SINE Alu 64 298 -8 360 64 0 0 chr5 10850620 10850667 -192234865 + (TA)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr5 10850700 10850724 -192234808 + AT_rich Low_complexity Low_complexity 1 24 0 822 147 37 0 chr5 10851104 10851240 -192234292 - L1PA15 LINE L1 -70 6095 5955 6744 195 28 26 chr5 10851240 10852776 -192232756 - L1PA15 LINE L1 -913 5233 3695 1325 116 10 76 chr5 10852828 10853129 -192232403 - AluY SINE Alu -28 283 3 2176 78 14 4 chr5 10853747 10854028 -192231504 - AluSp SINE Alu -29 284 1 381 223 96 0 chr5 10855389 10855483 -192230049 + MER58 DNA MER1_type 1 103 -112 832 292 83 29 chr5 10855618 10856039 -192229493 + MLT1J2 LTR MaLR 4 447 -3 1164 55 0 0 chr5 10856957 10857103 -192228429 - L1P LINE L1 -5999 147 2 225 0 0 0 chr5 10857728 10857753 -192227779 + (TG)n Simple_repeat Simple_repeat 2 26 0 306 338 40 14 chr5 10857753 10857901 -192227631 - L1MC4a LINE L1 -1882 5926 5775 1898 206 64 7 chr5 10858153 10858521 -192227011 + L1M4 LINE L1 4917 5338 -846 1882 55 16 8 chr5 10858521 10858777 -192226755 + L1PA13 LINE L1 5901 6158 -5 1898 206 64 7 chr5 10858777 10859025 -192226507 + L1M4 LINE L1 5338 5570 -614 390 263 16 3 chr5 10859094 10859203 -192226329 + L1M4 LINE L1 5529 5640 -543 25 31 0 0 chr5 10859222 10859254 -192226278 + AT_rich Low_complexity Low_complexity 1 32 0 964 125 7 0 chr5 10859333 10859485 -192226047 + L1M4 LINE L1 5637 5789 -395 307 49 0 0 chr5 10859586 10859627 -192225905 + L1PA3 LINE L1 6112 6152 -3 2555 131 5 0 chr5 10860975 10861348 -192224184 + THE1C LTR MaLR 1 375 0 28 48 0 0 chr5 10862091 10862133 -192223399 + AT_rich Low_complexity Low_complexity 1 42 0 400 318 103 18 chr5 10863802 10864025 -192221507 + MIR SINE MIR 9 250 -12 9915 74 7 37 chr5 10865607 10867526 -192218006 - L1PA7 LINE L1 -5 6149 4295 2293 104 0 0 chr5 10867526 10867823 -192217709 - AluSc SINE Alu -12 297 1 9915 74 7 37 chr5 10867823 10868173 -192217359 - L1PA7 LINE L1 -1859 4295 3936 342 366 137 26 chr5 10869437 10869852 -192215680 + L2 LINE L2 2812 3272 0 601 71 0 0 chr5 10869923 10870027 -192215505 + AluY SINE Alu 197 300 0 198 143 0 0 chr5 10870205 10870240 -192215292 + (TCC)n Simple_repeat Simple_repeat 3 37 0 484 317 12 19 chr5 10870908 10871069 -192214463 + MIR SINE MIR 16 175 -87 523 203 0 0 chr5 10871358 10871491 -192214041 - MER96B DNA MER1_type? -241 176 44 351 211 39 19 chr5 10871515 10871619 -192213913 + MIR SINE MIR 155 260 -2 840 304 103 21 chr5 10873364 10873782 -192211750 + L2 LINE L2 2855 3306 -7 29 70 0 0 chr5 10874092 10874149 -192211383 + AT_rich Low_complexity Low_complexity 1 57 0 446 279 39 26 chr5 10875509 10875663 -192209869 + MIR SINE MIR 34 189 -73 31 58 0 0 chr5 10877873 10877925 -192207607 + AT_rich Low_complexity Low_complexity 1 52 0 227 260 58 29 chr5 10878156 10878260 -192207272 - L1MC/D LINE L1 -1940 5868 5762 1210 212 48 79 chr5 10878270 10878600 -192206932 - MLT1F LTR MaLR -20 522 203 1181 130 27 0 chr5 10928682 10928867 -192156665 - L1PA15 LINE L1 -21 6144 5955 11275 215 17 30 chr5 10928867 10930402 -192155130 - L1P LINE L1 -913 5233 3748 1965 130 0 14 chr5 10930402 10930738 -192154794 - AluY SINE Alu 0 332 1 11275 215 17 30 chr5 10930738 10931970 -192153562 - L1P LINE L1 -2398 3748 2501 4693 216 22 14 chr5 10931973 10933794 -192151738 + L1P LINE L1 1326 3159 -3638 249 180 0 0 chr5 10933875 10933925 -192151607 + (CATA)n Simple_repeat Simple_repeat 2 51 0 546 296 150 25 chr5 10934551 10935348 -192150184 - L2 LINE L2 0 3313 2360 21 0 0 0 chr5 10937001 10937022 -192148510 + AT_rich Low_complexity Low_complexity 1 21 0 2264 108 0 0 chr5 10937156 10937461 -192148071 - AluSq SINE Alu -8 305 1 250 318 55 46 chr5 10938008 10938195 -192147337 - MIR SINE MIR -67 141 9 326 121 0 17 chr5 10938574 10938632 -192146900 + (TTA)n Simple_repeat Simple_repeat 3 59 0 182 182 0 0 chr5 10938956 10938989 -192146543 - L2 LINE L2 -8 3264 3232 187 286 71 12 chr5 10939974 10940058 -192145474 - MIR SINE MIR -77 185 97 232 224 0 71 chr5 10940105 10940190 -192145342 + L1MC4 LINE L1 6641 6719 -1323 217 135 27 0 chr5 10940416 10940453 -192145079 + GA-rich Low_complexity Low_complexity 2 39 0 451 272 144 68 chr5 10941295 10941780 -192143752 - LTR33A LTR ERVL -1 522 1 2312 106 6 3 chr5 10943067 10943378 -192142154 - AluSx SINE Alu 0 312 1 252 100 0 0 chr5 10944638 10944678 -192140854 + (TA)n Simple_repeat Simple_repeat 2 41 0 378 250 23 0 chr5 10944682 10944770 -192140762 + L1MC4 LINE L1 6614 6703 -1339 228 198 0 62 chr5 10944776 10944872 -192140660 + L1MC4 LINE L1 6614 6703 -1339 396 232 21 42 chr5 10944874 10945034 -192140498 + L1MC3 LINE L1 6526 6703 -1139 386 184 0 82 chr5 10945016 10945114 -192140418 + L1MC4 LINE L1 6614 6703 -1339 * 210 171 0 0 chr5 10945118 10945159 -192140373 + (TA)n Simple_repeat Simple_repeat 2 42 0 2564 199 16 40 chr5 10945176 10945212 -192140320 - MLT2B3 LTR ERVL -15 539 504 954 46 46 17 chr5 10945212 10945387 -192140145 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2564 199 16 40 chr5 10945387 10945894 -192139638 - MLT2B3 LTR ERVL -50 504 9 251 250 7 0 chr5 10946831 10946979 -192138553 + (CA)n Simple_repeat Simple_repeat 2 150 0 323 118 20 0 chr5 10947665 10947716 -192137816 - MLT1A1 LTR MaLR -313 52 1 298 294 28 18 chr5 10947810 10947919 -192137613 + MER94 DNA DNA 3 112 -22 1609 135 54 0 chr5 10948015 10948274 -192137258 - AluSx SINE Alu 0 312 40 21 36 0 0 chr5 10949210 10949238 -192136294 + AT_rich Low_complexity Low_complexity 1 28 0 1693 181 23 26 chr5 10951430 10951740 -192133792 + AluJo SINE Alu 1 309 -3 201 178 22 0 chr5 10952344 10952389 -192133143 + L2 LINE L2 3268 3313 0 306 0 0 0 chr5 10954141 10954175 -192131357 + (CA)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr5 10954725 10954748 -192130784 + AT_rich Low_complexity Low_complexity 1 23 0 229 297 33 11 chr5 10955121 10955212 -192130320 - MLT1H LTR MaLR 0 549 457 479 315 81 40 chr5 10957092 10957489 -192128043 + LTR33 LTR ERVL 5 417 -104 3091 168 78 28 chr5 10957513 10957736 -192127796 + MER7C DNA MER2_type 1 211 -2817 188 67 33 0 chr5 10957736 10957766 -192127766 + (CTCA)n Simple_repeat Simple_repeat 4 34 0 3091 168 78 28 chr5 10957766 10958115 -192127417 + MER7C DNA MER2_type 211 602 0 2500 121 3 0 chr5 10958808 10959155 -192126377 - L1PA13 LINE L1 -14 6149 5802 21 57 0 0 chr5 10960522 10960557 -192124975 + AT_rich Low_complexity Low_complexity 1 35 0 33 56 0 0 chr5 10960588 10960642 -192124890 + AT_rich Low_complexity Low_complexity 1 54 0 1613 95 36 0 chr5 10960775 10960997 -192124535 + L1PA10 LINE L1 5935 6164 -4 36 53 0 0 chr5 10961126 10961183 -192124349 + AT_rich Low_complexity Low_complexity 1 57 0 270 285 51 15 chr5 10961316 10961453 -192124079 - MIR SINE MIR -40 222 81 363 23 0 0 chr5 10961468 10961512 -192124020 + (TG)n Simple_repeat Simple_repeat 2 45 0 1369 214 206 3 chr5 10961515 10961893 -192123639 - MLT2B2 LTR ERVL -60 455 1 235 296 0 35 chr5 10962010 10962125 -192123407 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 * 274 275 58 7 chr5 10962066 10962204 -192123328 + (TAGA)n Simple_repeat Simple_repeat 2 146 0 1807 137 63 3 chr5 10962443 10962727 -192122805 - AluJb SINE Alu -11 301 1 12665 176 22 8 chr5 10964125 10965846 -192119686 - L1PB3 LINE L1 0 6154 4460 230 29 59 0 chr5 10965846 10965880 -192119652 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 12665 176 22 8 chr5 10965880 10966285 -192119247 - L1PB3 LINE L1 -1694 4460 4062 1962 138 10 3 chr5 10966285 10966581 -192118951 - AluSg SINE Alu -12 298 1 12665 176 22 8 chr5 10966581 10967924 -192117608 - L1PB3 LINE L1 -2092 4062 2633 1164 221 31 7 chr5 10968196 10968501 -192117031 - L1MB5 LINE L1 0 6180 5867 1097 223 16 27 chr5 10968500 10968756 -192116776 + L1MB5 LINE L1 5625 5877 -297 * 24 0 0 0 chr5 10969139 10969163 -192116369 + AT_rich Low_complexity Low_complexity 1 24 0 246 381 25 8 chr5 10969928 10970046 -192115486 - L2 LINE L2 -2047 1267 1148 2282 112 7 0 chr5 10970060 10970364 -192115168 + AluSg SINE Alu 1 306 -4 1888 184 3 0 chr5 10970382 10970691 -192114841 + AluSx SINE Alu 1 310 -2 1204 275 44 6 chr5 10970802 10971122 -192114410 + LTR16A LTR ERVL 116 447 -3 473 307 70 30 chr5 10971128 10971457 -192114075 + L2 LINE L2 2201 2542 -772 933 250 63 31 chr5 10973045 10973400 -192112132 - MLT2D LTR ERVL -8 389 1 279 371 60 12 chr5 10974080 10974247 -192111285 + MIR3 SINE MIR 3 177 -31 476 296 66 49 chr5 10974355 10974581 -192110951 + MIR SINE MIR 9 238 -24 250 192 207 14 chr5 10974623 10974733 -192110799 + MIR SINE MIR 33 154 -68 275 297 40 20 chr5 10975690 10975791 -192109741 + MIR SINE MIR 50 152 -110 198 370 76 0 chr5 10976661 10976780 -192108752 - L2 LINE L2 -22 3250 3123 21 36 0 0 chr5 10977020 10977048 -192108484 + AT_rich Low_complexity Low_complexity 1 28 0 708 141 62 8 chr5 10977400 10977528 -192108004 - L1MB5 LINE L1 0 6174 6040 2406 72 0 7 chr5 10977669 10977975 -192107557 - AluY SINE Alu -7 304 1 624 51 0 25 chr5 10977975 10978054 -192107478 - AluY SINE Alu -177 134 58 1088 166 59 63 chr5 10978434 10978624 -192106908 - L1MB5 LINE L1 -122 6052 5862 1726 179 43 18 chr5 10978624 10978953 -192106579 + MER1B DNA MER1_type 1 337 0 1088 166 59 63 chr5 10978953 10979033 -192106499 - L1MB5 LINE L1 -312 5862 5783 1079 203 11 103 chr5 10979052 10979431 -192106101 - MLT1B LTR MaLR -32 358 15 1230 199 139 42 chr5 10979449 10979688 -192105844 - L1MB5 LINE L1 -386 5788 5507 2238 125 3 0 chr5 10979688 10979999 -192105533 - AluSx SINE Alu 0 312 1 1230 199 139 42 chr5 10979999 10980091 -192105441 - L1MB5 LINE L1 -667 5507 5425 471 247 61 47 chr5 10980089 10980324 -192105208 - L1MC/D LINE L1 -350 5771 5541 * 3204 199 61 15 chr5 10980527 10981281 -192104251 - L1MB5 LINE L1 -1910 4236 3448 3299 191 30 80 chr5 10981284 10982136 -192103396 + L1PA12 LINE L1 5347 6156 -12 269 250 47 0 chr5 10982465 10982529 -192103003 + L2 LINE L2 2897 2963 -309 636 209 32 0 chr5 10982531 10982674 -192102858 - L1MC4 LINE L1 -964 7062 6884 231 267 0 80 chr5 10982775 10982850 -192102682 + L2 LINE L2 3245 3313 0 1244 209 133 37 chr5 10983527 10983951 -192101581 + MER66A LTR ERV1 97 478 0 239 284 81 20 chr5 10984888 10985036 -192100496 - L1 LINE L1 -1723 4423 4267 2504 284 72 37 chr5 10985941 10987652 -192097880 - L1 LINE L1 -2230 3916 2146 378 260 42 0 chr5 10987673 10987769 -192097763 + MER45A DNA AcHobo 79 178 0 254 254 218 0 chr5 10987917 10988027 -192097505 - MIR SINE MIR -2 260 127 230 341 44 0 chr5 10988054 10988145 -192097387 - MIR SINE MIR -123 139 45 189 0 0 0 chr5 10989342 10989363 -192096169 + (A)n Simple_repeat Simple_repeat 1 21 0 186 43 0 0 chr5 10989779 10989802 -192095730 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1377 112 0 16 chr5 10989822 10990009 -192095523 - AluSx SINE Alu -127 185 2 1023 214 119 35 chr5 10990972 10991320 -192094212 - MER31B LTR ERV1 0 543 74 4131 136 47 16 chr5 10993060 10993738 -192091794 - LTR34 LTR ERV1 0 699 1 25 0 0 0 chr5 10995138 10995163 -192090369 + AT_rich Low_complexity Low_complexity 1 25 0 497 274 80 63 chr5 10995280 10995642 -192089890 + L1ME4a LINE L1 5574 5941 -180 363 282 24 8 chr5 10995835 10995874 -192089658 - L1MA10 LINE L1 -14 6320 6282 1758 252 35 46 chr5 10995874 10996465 -192089067 - L1ME1 LINE L1 -44 6122 5538 6648 92 18 3 chr5 10996491 10997725 -192087807 - L1PA10 LINE L1 0 6168 4917 425 286 86 52 chr5 10997800 10998069 -192087463 - LTR43 LTR ERV1 -145 457 180 988 217 9 9 chr5 10998584 10998796 -192086736 - L1ME1 LINE L1 -629 5537 5326 2618 231 113 86 chr5 10998798 10999049 -192086483 + L1M4 LINE L1 3611 3854 -2292 372 111 0 0 chr5 10999049 10999112 -192086420 + (TATG)n Simple_repeat Simple_repeat 2 64 0 2618 231 113 86 chr5 10999112 10999358 -192086174 + L1M4 LINE L1 3854 4092 -2054 1970 138 3 25 chr5 10999358 10999677 -192085855 - AluSx SINE Alu 0 312 1 2618 231 113 86 chr5 10999677 11000727 -192084805 + L1M4 LINE L1 4092 5335 -811 2219 119 64 9 chr5 11001004 11001348 -192084184 - THE1B LTR MaLR -1 363 1 203 187 40 27 chr5 11002397 11002472 -192083060 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 312 318 30 38 chr5 11002844 11002976 -192082556 - MIR SINE MIR -112 150 20 730 293 127 21 chr5 11002982 11003361 -192082171 - L2 LINE L2 -1 3312 2894 283 275 113 50 chr5 11003669 11003829 -192081703 + MIR3 SINE MIR 13 182 -26 212 100 50 0 chr5 11004779 11004819 -192080713 + (TG)n Simple_repeat Simple_repeat 2 43 0 879 161 6 25 chr5 11005572 11005734 -192079798 - THE1C LTR MaLR 0 375 217 583 162 9 9 chr5 11005738 11005843 -192079689 - THE1C LTR MaLR -321 107 3 354 163 28 0 chr5 11008000 11008072 -192077460 + Tigger4(Zombi) DNA MER2_type -2 2717 -14 1810 166 7 14 chr5 11008346 11008641 -192076891 + AluJb SINE Alu 1 293 -19 709 258 79 97 chr5 11009457 11009965 -192075567 + MLT1F LTR MaLR 28 526 -16 5137 106 13 12 chr5 11010531 11011221 -192074311 - LTR8 LTR ERV1 0 691 1 2314 165 89 50 chr5 11012148 11012681 -192072851 + LTR8A LTR ERV1 1 554 -173 2256 162 77 2 chr5 11012681 11013083 -192072449 + MER57B LTR ERV1 3 434 0 880 222 20 86 chr5 11013896 11014198 -192071334 + MER33 DNA MER1_type 7 288 -36 411 163 163 0 chr5 11014221 11014319 -192071213 + L1MA8 LINE L1 6170 6283 -8 226 131 66 82 chr5 11014324 11014385 -192071147 + MER33 DNA MER1_type 258 317 -7 329 305 207 53 chr5 11014929 11015267 -192070265 - L1ME LINE L1 -5629 441 52 3241 159 19 62 chr5 11015541 11016181 -192069351 - LTR9 LTR ERV1 0 612 1 2044 189 84 25 chr5 11016584 11017200 -192068332 - MER39 LTR ERV1 -5 702 2 281 261 51 72 chr5 11017348 11017486 -192068046 + MLT1H LTR MaLR 37 171 -378 320 287 18 43 chr5 11017592 11017657 -192067875 + MER41B LTR ERV1 54 119 -516 2455 79 0 10 chr5 11017657 11017962 -192067570 + AluY SINE Alu 1 302 -9 320 287 18 43 chr5 11017962 11018145 -192067387 + MER41B LTR ERV1 119 430 -205 250 260 130 41 chr5 11018534 11018657 -192066875 + MLT1H LTR MaLR 400 533 -16 1769 165 9 36 chr5 11018782 11019115 -192066417 + MER65A LTR ERV1 3 326 -119 554 90 51 0 chr5 11019105 11019183 -192066349 + MER51B LTR ERV1 296 377 0 * 1800 199 18 15 chr5 11020827 11021169 -192064363 + MER61A LTR ERV1 1 343 0 4456 133 61 22 chr5 11021169 11021927 -192063605 + MER61A-int LTR ERV1 1 787 -4430 * 26128 98 27 14 chr5 11021912 11025712 -192059820 + MER61A-int LTR ERV1 1320 5216 -1 1913 164 26 23 chr5 11025712 11026054 -192059478 + MER61A LTR ERV1 1 343 0 455 273 62 11 chr5 11026187 11026363 -192059169 - MIR SINE MIR -58 204 20 641 284 39 0 chr5 11026944 11027148 -192058384 + L1ME2 LINE L1 5364 5575 -2210 553 169 0 0 chr5 11027157 11027240 -192058292 + AluJ/FLAM SINE Alu 2 84 -228 282 256 156 11 chr5 11027240 11027330 -192058202 + L1ME2 LINE L1 5573 5675 -489 1670 221 56 25 chr5 11027474 11027923 -192057609 + L1ME2 LINE L1 5683 6145 -19 2092 164 62 34 chr5 11028310 11028726 -192056806 - MSTA LTR MaLR 0 428 1 1422 236 15 18 chr5 11028749 11029143 -192056389 + Charlie1b DNA MER1_type 2 394 -129 26 30 0 0 chr5 11029143 11029176 -192056356 + AT_rich Low_complexity Low_complexity 1 33 0 299 279 52 52 chr5 11029421 11029593 -192055939 + MIR SINE MIR 47 218 -44 201 206 175 16 chr5 11029803 11029866 -192055666 + L2 LINE L2 3200 3272 0 21 57 0 0 chr5 11030149 11030184 -192055348 + AT_rich Low_complexity Low_complexity 1 35 0 2008 186 49 3 chr5 11031860 11032209 -192053323 - MLT1A1 LTR MaLR 0 365 1 189 141 41 59 chr5 11032267 11032437 -192053095 + (TTATA)n Simple_repeat Simple_repeat 3 169 0 * 252 124 87 6 chr5 11032406 11032567 -192052965 + (TA)n Simple_repeat Simple_repeat 1 174 0 28 29 0 0 chr5 11032637 11032672 -192052860 + AT_rich Low_complexity Low_complexity 1 35 0 1631 202 74 3 chr5 11033248 11033585 -192051947 + MLT1A1 LTR MaLR 4 364 -1 1612 196 95 83 chr5 11033934 11034000 -192051532 - MLT1D LTR MaLR 0 505 441 2095 113 0 7 chr5 11034000 11034284 -192051248 + AluSx SINE Alu 1 282 -30 1612 196 95 83 chr5 11034284 11034713 -192050819 - MLT1D LTR MaLR -64 441 4 485 117 64 0 chr5 11035452 11035546 -192049986 - L1MA8 LINE L1 -101 6190 6091 571 173 9 0 chr5 11035546 11035640 -192049892 + L1MA8 LINE L1 6179 6289 -2 252 322 9 0 chr5 11035707 11035822 -192049710 + L1MCc LINE L1 1285 1400 -5023 572 223 81 39 chr5 11035831 11036156 -192049376 + MLT1F LTR MaLR 175 542 0 1238 249 36 42 chr5 11036156 11036634 -192048898 + L1ME3A LINE L1 5646 6120 -50 4648 174 111 32 chr5 11038508 11039585 -192045947 - MER52C LTR ERV1 0 1278 116 276 77 0 0 chr5 11040330 11040369 -192045163 + (CA)n Simple_repeat Simple_repeat 2 40 0 2040 148 35 27 chr5 11040731 11041103 -192044429 + THE1C LTR MaLR 1 375 0 402 317 7 21 chr5 11041620 11041762 -192043770 - L2 LINE L2 -1 3312 3173 1113 294 75 21 chr5 11041851 11042408 -192043124 - L2 LINE L2 -413 2901 2315 1285 268 26 52 chr5 11042415 11042878 -192042654 + MLT1C LTR MaLR 10 460 -7 565 283 143 7 chr5 11042892 11043185 -192042347 - L2 LINE L2 -1001 2313 1981 2088 204 20 32 chr5 11043204 11043646 -192041886 + MER70A LTR ERVL 36 472 0 259 284 128 0 chr5 11043723 11043832 -192041700 - L2 LINE L2 -1391 1923 1801 298 320 77 13 chr5 11043947 11044103 -192041429 + L2 LINE L2 2623 2788 -526 366 326 99 38 chr5 11044199 11044648 -192040884 + L1MC/D LINE L1 5269 5743 -419 * 618 225 8 0 chr5 11044625 11044754 -192040778 - L1M2 LINE L1 -494 5818 5689 769 180 0 0 chr5 11044754 11044885 -192040647 + L1MA9 LINE L1 6174 6312 0 746 231 9 59 chr5 11044889 11044977 -192040555 + L1MD1 LINE L1 6033 6124 -118 2264 124 0 0 chr5 11044977 11045283 -192040249 - AluSq SINE Alu -7 306 1 746 231 9 59 chr5 11045283 11045415 -192040117 + L1MD1 LINE L1 6124 6242 0 625 274 96 15 chr5 11045854 11046124 -192039408 - HAL1 LINE L1 -2213 294 3 1866 196 2 45 chr5 11046136 11046533 -192038999 - MLT1B LTR MaLR -8 382 3 1615 180 39 29 chr5 11046849 11047155 -192038377 - AluJb SINE Alu -3 309 1 560 244 77 18 chr5 11047627 11047795 -192037737 - MER45A DNA AcHobo 0 178 1 2356 60 4 0 chr5 11048916 11049236 -192036296 + AluY SINE Alu 1 321 0 3280 149 39 6 chr5 11049933 11050443 -192035089 - MER1A DNA MER1_type 0 527 1 533 233 43 43 chr5 11051047 11051335 -192034197 + MLT1D LTR MaLR 128 505 0 468 218 0 15 chr5 11051859 11051977 -192033555 - L1MC4 LINE L1 -364 7631 7448 270 0 0 0 chr5 11051990 11052020 -192033512 + (TG)n Simple_repeat Simple_repeat 2 31 0 1695 211 124 63 chr5 11053231 11053805 -192031727 + MLT1E2 LTR MaLR 2 610 -16 2427 185 57 19 chr5 11055921 11055941 -192029591 - L1MC2 LINE L1 -1 6343 6325 2514 64 0 0 chr5 11055941 11056237 -192029295 - AluY SINE Alu -15 296 1 2427 185 57 19 chr5 11056237 11056747 -192028785 - L1MC2 LINE L1 -19 6325 5793 2029 145 0 0 chr5 11056757 11057054 -192028478 - AluSx SINE Alu -13 299 3 871 127 14 18 chr5 11057068 11057285 -192028247 - L1MC1 LINE L1 -271 6062 5698 2003 102 3 108 chr5 11058025 11058348 -192027184 + AluSq SINE Alu 1 289 -14 13336 207 14 9 chr5 11058506 11058553 -192026979 - L1PA15 LINE L1 -1 6164 6119 2053 144 0 0 chr5 11058553 11058894 -192026638 - AluSx SINE Alu 0 312 1 13336 207 14 9 chr5 11058894 11062237 -192023295 - L1PA15 LINE L1 -46 6119 2761 185 0 40 0 chr5 11062237 11062262 -192023270 + (TTG)n Simple_repeat Simple_repeat 2 27 0 13336 207 14 9 chr5 11062262 11062485 -192023047 - L1PA15 LINE L1 -3404 2761 2540 278 260 91 0 chr5 11064675 11064752 -192020780 - LTR33A LTR ERVL -3 520 437 343 273 78 8 chr5 11064849 11064977 -192020555 - LTR50 LTR ERVL -160 635 499 263 298 142 60 chr5 11065631 11065933 -192019599 - HERVL LTR ERVL -255 5399 5073 1793 327 76 27 chr5 11066013 11067248 -192018284 - HERVL LTR ERVL -1234 4530 3157 21 57 0 0 chr5 11067301 11067336 -192018196 + AT_rich Low_complexity Low_complexity 1 35 0 488 89 40 20 chr5 11067834 11067935 -192017597 + GA-rich Low_complexity Low_complexity 3 105 0 848 110 6 33 chr5 11067935 11068117 -192017415 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 214 184 0 0 chr5 11068117 11068155 -192017377 + GA-rich Low_complexity Low_complexity 2 39 0 1942 191 100 12 chr5 11068161 11068590 -192016942 - MLT1C LTR MaLR 0 467 1 3624 203 44 48 chr5 11068967 11069884 -192015648 - L1MC3 LINE L1 0 7785 6873 1678 197 16 55 chr5 11069884 11070130 -192015402 - MLT1A1 LTR MaLR 0 365 138 1580 221 106 81 chr5 11070130 11070837 -192014695 - LTR8A LTR ERV1 -2 725 1 1678 197 16 55 chr5 11070837 11070970 -192014562 - MLT1A1 LTR MaLR -227 138 1 1216 197 68 17 chr5 11070970 11071265 -192014267 - L1MC3 LINE L1 -936 6849 6540 2933 141 136 2 chr5 11071301 11071825 -192013707 - LTR29 LTR ERV1 -28 594 1 5142 191 55 6 chr5 11071825 11072871 -192012661 - L1MC3 LINE L1 -1242 6543 5446 2723 32 0 0 chr5 11072874 11073185 -192012347 - AluYa5 SINE Alu 0 311 1 226 161 54 54 chr5 11074143 11074199 -192011333 - MLT1-int LTR MaLR -1311 60 5 245 315 69 22 chr5 11074620 11074810 -192010722 - MIR3 SINE MIR -46 216 15 2301 254 63 15 chr5 11076125 11076732 -192008800 - MER92B LTR ERV1 0 636 1 277 297 78 16 chr5 11077993 11078121 -192007411 - L1MDa LINE L1 -4840 1700 1565 2184 223 109 24 chr5 11078273 11078941 -192006591 + MER50 LTR ERV1 10 734 0 2811 187 36 11 chr5 11079343 11079397 -192006135 + MER44D DNA MER2_type 2 53 -2434 4185 99 51 14 chr5 11079397 11079985 -192005547 - MER4B LTR ERV1 0 610 1 2811 187 36 11 chr5 11079985 11080464 -192005068 + MER44D DNA MER2_type 53 603 -2 2242 78 0 11 chr5 11081189 11081496 -192004036 - AluSc SINE Alu 0 304 1 1276 210 4 0 chr5 11082619 11082857 -192002675 - AluJb SINE Alu -73 239 1 652 301 65 16 chr5 11083709 11083955 -192001577 + LTR16B LTR ERVL 196 453 -11 430 304 75 76 chr5 11084238 11085019 -192000513 + L2 LINE L2 2272 3051 -221 255 31 0 0 chr5 11085070 11085102 -192000430 + (TG)n Simple_repeat Simple_repeat 2 33 0 1850 121 0 72 chr5 11085102 11085409 -192000123 - AluSx SINE Alu -27 285 1 187 243 79 121 chr5 11085547 11085687 -191999845 + L3 LINE CR1 1443 1576 -1 399 236 6 51 chr5 11086087 11086265 -191999267 + (TATATG)n Simple_repeat Simple_repeat 4 173 0 1588 259 112 27 chr5 11086753 11087228 -191998304 + MLT1E LTR MaLR 75 589 -4 578 157 0 0 chr5 11087351 11087434 -191998098 + AluS SINE Alu 2 84 -229 3707 130 28 30 chr5 11088234 11088835 -191996697 + MER4A LTR ERV1 1 600 0 21 57 0 0 chr5 11088964 11088999 -191996533 + AT_rich Low_complexity Low_complexity 1 35 0 274 232 0 0 chr5 11089544 11089600 -191995932 + LTR33 LTR ERVL 77 132 -389 2813 107 3 3 chr5 11089754 11090118 -191995414 + THE1B LTR MaLR 1 364 0 244 261 33 11 chr5 11090148 11090240 -191995292 + LTR33 LTR ERVL 397 490 -31 253 342 7 40 chr5 11090242 11090391 -191995141 - MIR SINE MIR -59 203 60 298 316 162 0 chr5 11091115 11091232 -191994300 - L2 LINE L2 -15 3257 3122 2486 91 0 0 chr5 11092827 11093135 -191992397 + AluSx SINE Alu 1 308 -4 762 308 115 16 chr5 11093505 11093950 -191991582 + LTR33 LTR ERVL 24 512 -9 1667 206 41 15 chr5 11095466 11095805 -191989727 - MER7A DNA MER2_type 0 346 1 234 91 0 0 chr5 11095991 11096024 -191989508 + (TA)n Simple_repeat Simple_repeat 1 33 0 198 0 0 0 chr5 11096077 11096099 -191989433 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 462 49 0 0 chr5 11096098 11096159 -191989373 + (GA)n Simple_repeat Simple_repeat 2 62 0 1522 234 105 18 chr5 11097922 11098380 -191987152 - MLT1D LTR MaLR 0 505 8 409 255 56 87 chr5 11098406 11098637 -191986895 + MLT1K LTR MaLR 328 551 -37 23 0 0 0 chr5 11099292 11099315 -191986217 + AT_rich Low_complexity Low_complexity 1 23 0 2140 117 0 0 chr5 11099928 11100255 -191985277 + AluSx SINE Alu 1 327 0 224 269 10 0 chr5 11100450 11100554 -191984978 + (TG)n Simple_repeat Simple_repeat 2 106 0 841 239 50 18 chr5 11100902 11101120 -191984412 - MLT1B LTR MaLR 0 390 166 507 157 21 21 chr5 11101122 11101262 -191984270 + CT-rich Low_complexity Low_complexity 1 140 0 1053 140 0 0 chr5 11101268 11101446 -191984086 + (TTC)n Simple_repeat Simple_repeat 3 180 0 236 267 0 0 chr5 11101455 11101515 -191984017 - FLAM SINE Alu -1 132 73 * 764 224 11 38 chr5 11101499 11101682 -191983850 - MLT1B LTR MaLR -211 179 2 2082 136 19 45 chr5 11102256 11102630 -191982902 + THE1B LTR MaLR 1 364 0 303 311 52 15 chr5 11103366 11103501 -191982031 + MIR SINE MIR 25 164 -98 233 263 84 66 chr5 11103592 11103805 -191981727 + L1MC1 LINE L1 3895 4111 -2035 383 205 18 35 chr5 11104572 11104807 -191980725 + (TATAA)n Simple_repeat Simple_repeat 1 230 0 228 217 29 0 chr5 11104780 11104849 -191980683 + T-rich Low_complexity Low_complexity 1 71 0 * 23 54 0 0 chr5 11104878 11104915 -191980617 + AT_rich Low_complexity Low_complexity 1 37 0 5354 203 15 16 chr5 11105110 11106113 -191979419 + L1MC1 LINE L1 4819 5821 -512 432 37 0 0 chr5 11106113 11106167 -191979365 + (CA)n Simple_repeat Simple_repeat 1 54 0 5354 203 15 16 chr5 11106167 11106315 -191979217 + L1MC1 LINE L1 5821 5968 -365 2022 152 3 0 chr5 11106315 11106624 -191978908 + AluSx SINE Alu 1 310 -2 5354 203 15 16 chr5 11106624 11106988 -191978544 + L1MC1 LINE L1 5968 6333 0 541 240 25 75 chr5 11107072 11107195 -191978337 + MIR SINE MIR 73 184 -78 2115 128 0 16 chr5 11107195 11107499 -191978033 - AluSx SINE Alu -13 299 1 541 240 25 75 chr5 11107499 11107575 -191977957 + MIR SINE MIR 184 262 0 2051 128 25 0 chr5 11108383 11108664 -191976868 + AluSg SINE Alu 5 292 -18 210 118 0 0 chr5 11109135 11109169 -191976363 + (CATATA)n Simple_repeat Simple_repeat 5 38 0 263 191 176 69 chr5 11109170 11109301 -191976231 + L1ME4a LINE L1 5947 6091 -30 185 105 0 26 chr5 11109932 11109970 -191975562 + (TA)n Simple_repeat Simple_repeat 2 38 0 1473 91 21 45 chr5 11110109 11110352 -191975180 + L1PA5 LINE L1 5918 6154 0 186 189 0 0 chr5 11111694 11111731 -191973801 + (CAT)n Simple_repeat Simple_repeat 2 38 0 236 184 207 23 chr5 11111903 11111990 -191973542 + MIR SINE MIR 52 154 -108 816 271 45 16 chr5 11112911 11113280 -191972252 + L1ME LINE L1 498 873 -5197 680 191 58 143 chr5 11115321 11115465 -191970067 - MLT1B LTR MaLR -122 268 160 2192 129 36 33 chr5 11115465 11115828 -191969704 + THE1B LTR MaLR 1 364 0 680 191 58 143 chr5 11115828 11115976 -191969556 - MLT1B LTR MaLR -230 160 1 294 176 22 11 chr5 11116556 11116647 -191968885 + (CA)n Simple_repeat Simple_repeat 2 93 0 508 303 59 17 chr5 11117010 11117248 -191968284 - LTR16C LTR ERVL -94 397 150 1297 163 0 5 chr5 11117327 11117536 -191967996 + AluJb SINE Alu 86 293 -19 216 135 0 0 chr5 11117550 11117587 -191967945 + (CA)n Simple_repeat Simple_repeat 2 38 0 3103 140 45 18 chr5 11117822 11118373 -191967159 + L1MB3 LINE L1 5618 6183 0 198 305 17 0 chr5 11119300 11119359 -191966173 + L2 LINE L2 3249 3308 -5 1929 104 107 7 chr5 11122640 11122920 -191962612 + AluSx SINE Alu 1 308 -4 766 235 6 0 chr5 11123802 11123964 -191961568 - MLT1E2 LTR MaLR -6 499 337 1152 235 34 53 chr5 11124014 11124392 -191961140 + MLT1C LTR MaLR 97 467 0 1026 226 65 62 chr5 11124409 11124745 -191960787 - MLT1E2 LTR MaLR -289 337 1 199 307 150 13 chr5 11125148 11125301 -191960231 - L2 LINE L2 -222 3050 2877 673 122 9 0 chr5 11125524 11125631 -191959901 + MER50 LTR ERV1 497 604 -130 907 249 128 21 chr5 11128089 11128418 -191957114 - MLT1D LTR MaLR -6 499 136 599 148 9 19 chr5 11128538 11128646 -191956886 - MLT2C2 LTR ERVL -357 107 1 1441 240 58 17 chr5 11129400 11129817 -191955715 + MLT1C LTR MaLR 1 434 -33 1332 115 0 6 chr5 11129829 11130011 -191955521 - AluSq SINE Alu -132 181 1 2078 119 0 7 chr5 11130799 11131092 -191954440 + AluSx SINE Alu 1 291 -21 23 54 0 0 chr5 11131612 11131649 -191953883 + AT_rich Low_complexity Low_complexity 1 37 0 309 206 39 59 chr5 11131663 11131765 -191953767 + MIR3 SINE MIR 86 185 -23 407 339 5 16 chr5 11132578 11132770 -191952762 - MIR SINE MIR -29 233 44 287 269 0 0 chr5 11133440 11133507 -191952025 + CT-rich Low_complexity Low_complexity 2 68 0 669 145 51 0 chr5 11135319 11135457 -191950075 + L1MA5 LINE L1 6155 6299 -1 2967 141 65 6 chr5 11135600 11136090 -191949442 - LTR44 LTR ERV1 0 519 1 3096 77 8 2 chr5 11136257 11136659 -191948873 + MLT2A1 LTR ERVL 1 404 -40 648 173 0 0 chr5 11136670 11136820 -191948712 + (TA)n Simple_repeat Simple_repeat 1 150 0 225 140 0 88 chr5 11136843 11136900 -191948632 + LTR66 LTR ERVL 398 449 -161 * 324 98 59 0 chr5 11136883 11136934 -191948598 + MLT2A1 LTR ERVL 391 444 0 273 119 0 0 chr5 11137411 11137453 -191948079 + (TG)n Simple_repeat Simple_repeat 1 42 0 279 54 0 0 chr5 11137912 11137949 -191947583 + (TG)n Simple_repeat Simple_repeat 1 37 0 1548 113 8 8 chr5 11138156 11138395 -191947137 - MER57B LTR ERV1 0 434 196 24 0 0 0 chr5 11138665 11138689 -191946843 + AT_rich Low_complexity Low_complexity 1 24 0 1397 122 15 5 chr5 11138731 11138936 -191946596 - MER57B LTR ERV1 -227 207 1 1741 195 57 3 chr5 11139146 11139464 -191946068 + MLT1A1 LTR MaLR 9 343 -22 469 162 0 0 chr5 11139631 11139705 -191945827 + FLAM_A SINE Alu 32 105 -37 451 101 0 14 chr5 11140291 11140360 -191945172 - MER4A LTR ERV1 -596 68 1 233 303 0 9 chr5 11140361 11140470 -191945062 - L1MEd LINE L1 -4583 2138 2031 920 96 7 44 chr5 11140476 11140611 -191944921 + FRAM SINE Alu 20 149 -27 274 314 16 21 chr5 11140617 11140811 -191944721 - L1MEd LINE L1 -4550 1990 1798 186 43 0 0 chr5 11140841 11140864 -191944668 + (T)n Simple_repeat Simple_repeat 1 23 0 332 325 22 39 chr5 11140987 11141294 -191944238 - L1MEd LINE L1 -4890 1640 1278 210 37 0 0 chr5 11141307 11141334 -191944198 + (TTG)n Simple_repeat Simple_repeat 1 27 0 191 114 29 0 chr5 11141426 11141461 -191944071 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 250 394 7 19 chr5 11142163 11142318 -191943214 - MER5A DNA MER1_type -36 153 1 252 0 0 0 chr5 11143016 11143044 -191942488 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2200 64 44 17 chr5 11143633 11143930 -191941602 + AluY SINE Alu 1 305 -6 258 156 0 0 chr5 11145553 11145598 -191939934 + GA-rich Low_complexity Low_complexity 2 46 0 291 54 0 0 chr5 11146406 11146443 -191939089 + (CA)n Simple_repeat Simple_repeat 2 38 0 1047 202 40 0 chr5 11146460 11146658 -191938874 - MER20 DNA MER1_type -9 210 5 2176 129 26 6 chr5 11146708 11147050 -191938482 + MER49 LTR ERV1 10 358 -565 931 189 0 11 chr5 11147050 11147230 -191938302 + MER49 LTR ERV1 746 923 0 212 364 31 8 chr5 11147605 11147734 -191937798 - MIR SINE MIR -111 151 20 204 132 26 0 chr5 11148599 11148637 -191936895 + CT-rich Low_complexity Low_complexity 2 40 0 285 29 0 0 chr5 11148637 11148671 -191936861 + (CA)n Simple_repeat Simple_repeat 1 34 0 571 227 244 27 chr5 11150528 11151020 -191934512 - LTR50 LTR ERVL -4 791 83 260 243 21 7 chr5 11152327 11152471 -191933061 + (CA)n Simple_repeat Simple_repeat 1 146 0 2548 164 67 61 chr5 11155263 11155885 -191929647 - L1MC1 LINE L1 -1 6332 5710 221 278 19 0 chr5 11156048 11156102 -191929430 + L2 LINE L2 3006 3060 -253 24 0 0 0 chr5 11156426 11156450 -191929082 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr5 11156614 11156637 -191928895 + AT_rich Low_complexity Low_complexity 1 23 0 1058 214 34 8 chr5 11156677 11156911 -191928621 - MLT1G LTR MaLR 0 590 351 1503 186 84 12 chr5 11156984 11157317 -191928215 - MLT1A1 LTR MaLR 0 365 9 621 228 28 62 chr5 11157318 11157529 -191928003 - MLT1G LTR MaLR -391 204 1 23 0 0 0 chr5 11157640 11157663 -191927869 + AT_rich Low_complexity Low_complexity 1 23 0 1104 173 309 19 chr5 11158503 11158851 -191926681 + MER31B LTR ERV1 6 505 -9 1175 160 5 0 chr5 11158954 11159142 -191926390 - MSTB LTR MaLR -235 191 3 9269 180 21 8 chr5 11159144 11160774 -191924758 - MSTB-int LTR MaLR 0 1651 1 2113 185 28 28 chr5 11160778 11161200 -191924332 - MSTB LTR MaLR -3 423 2 304 325 126 15 chr5 11161778 11161984 -191923548 - LTR33 LTR ERVL 0 521 293 208 250 11 11 chr5 11162427 11162435 -191923097 + (TA)n Simple_repeat Simple_repeat 2 9 -80 2392 87 0 3 chr5 11162435 11162747 -191922785 - AluY SINE Alu 0 311 1 208 250 11 11 chr5 11162747 11162826 -191922706 + (TA)n Simple_repeat Simple_repeat 8 89 0 252 350 26 8 chr5 11163208 11163325 -191922207 - L2 LINE L2 -4 3268 3150 27 29 0 0 chr5 11163977 11164011 -191921521 + AT_rich Low_complexity Low_complexity 1 34 0 2450 96 0 3 chr5 11164364 11164677 -191920855 - AluSp SINE Alu -1 312 1 1735 250 53 21 chr5 11165277 11166108 -191919424 + L1ME2 LINE L1 4905 5768 -396 1111 209 34 47 chr5 11166110 11166406 -191919126 + L1ME2 LINE L1 5863 6154 -10 1984 219 35 22 chr5 11166458 11166947 -191918585 - MLT1D LTR MaLR -8 497 3 493 289 41 5 chr5 11167240 11167437 -191918095 - MER114 LTR ERV 0 648 445 955 239 15 31 chr5 11167544 11167989 -191917543 - L1ME2 LINE L1 -118 6046 5515 697 225 127 12 chr5 11167989 11168242 -191917290 - MER114 LTR ERV -366 282 1 2385 90 3 0 chr5 11168337 11168637 -191916895 + AluSp SINE Alu 1 301 -12 629 319 86 0 chr5 11169181 11169391 -191916141 - LTR16A LTR ERVL 0 450 223 288 359 23 0 chr5 11169426 11169554 -191915978 - LTR16A LTR ERVL -304 146 16 25 31 0 0 chr5 11171799 11171831 -191913701 + AT_rich Low_complexity Low_complexity 1 32 0 1799 147 0 4 chr5 11174752 11175010 -191910522 + AluSx SINE Alu 36 292 -20 412 257 73 0 chr5 11175424 11175560 -191909972 - L1ME3A LINE L1 -317 5922 5777 268 273 70 21 chr5 11175580 11175723 -191909809 - L1ME3A LINE L1 -554 5685 5536 243 251 80 68 chr5 11175772 11175810 -191909722 - L1ME3A LINE L1 -1553 4662 4626 1959 144 18 37 chr5 11175810 11176192 -191909340 + THE1C LTR MaLR 1 375 0 243 251 80 68 chr5 11176192 11176316 -191909216 - L1ME3A LINE L1 -1589 4626 4498 325 286 42 60 chr5 11176337 11176383 -191909149 - L1MEc LINE L1 -3903 2316 2271 1609 145 64 28 chr5 11176383 11176665 -191908867 - AluJb SINE Alu -20 292 1 325 286 42 60 chr5 11176665 11176956 -191908576 - L1MEc LINE L1 -3948 2271 2016 315 281 189 18 chr5 11176992 11177273 -191908259 - L1MEc LINE L1 -4441 1955 1627 228 189 0 0 chr5 11177502 11177539 -191907993 - L1P LINE L1 -1225 4921 4885 188 309 107 0 chr5 11178052 11178136 -191907396 - MIR SINE MIR -130 132 40 826 186 6 19 chr5 11178669 11178825 -191906707 - MLT1D LTR MaLR -351 154 1 473 250 0 0 chr5 11178835 11178939 -191906593 + L1MC5 LINE L1 7315 7418 -543 239 274 128 10 chr5 11181541 11181643 -191903889 - MIR SINE MIR -110 152 39 547 258 84 50 chr5 11181646 11181853 -191903679 + LTR16A1 LTR ERVL 16 214 -243 1884 211 8 6 chr5 11181853 11182217 -191903315 + MLT1A1 LTR MaLR 1 365 0 547 258 84 50 chr5 11182217 11182392 -191903140 + LTR16A1 LTR ERVL 214 456 -1 839 338 42 11 chr5 11182393 11182840 -191902692 + HERV16 LTR ERVL 1 461 -4535 814 323 73 46 chr5 11182872 11183994 -191901538 + ERVL LTR ERVL 3841 5021 -743 873 270 41 55 chr5 11184443 11184902 -191900630 + LTR16A1 LTR ERVL 1 453 -4 30 45 0 0 chr5 11186187 11186231 -191899301 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr5 11186558 11186579 -191898953 + AT_rich Low_complexity Low_complexity 1 21 0 234 220 38 8 chr5 11186783 11186915 -191898617 + (TA)n Simple_repeat Simple_repeat 2 137 0 2255 156 80 3 chr5 11186924 11187314 -191898218 - MSTA LTR MaLR 0 428 9 250 259 104 50 chr5 11187348 11187568 -191897964 - L1M4 LINE L1 -2370 3776 3545 286 294 112 36 chr5 11187697 11188170 -191897362 - L1M4 LINE L1 -2782 3364 2856 2649 20 0 3 chr5 11188262 11188558 -191896974 + AluY SINE Alu 1 295 -16 3433 192 61 9 chr5 11188813 11190167 -191895365 - L1MA9 LINE L1 -113 6199 4772 810 186 35 66 chr5 11190308 11190534 -191894998 + MER20 DNA MER1_type 1 219 0 1688 227 30 35 chr5 11191097 11191559 -191893973 + L1MB5 LINE L1 5714 6173 -1 2440 126 27 10 chr5 11191569 11191975 -191893557 + L1MA3 LINE L1 5893 6305 0 1757 171 105 0 chr5 11193453 11193758 -191891774 - MER1B DNA MER1_type 0 337 1 1932 112 7 0 chr5 11193797 11194075 -191891457 + L1PA12 LINE L1 5748 6027 -141 1960 113 17 125 chr5 11194369 11194777 -191890755 + THE1B LTR MaLR 1 364 0 1314 160 22 9 chr5 11195031 11195262 -191890270 - MLT1C LTR MaLR -233 234 1 1643 115 0 49 chr5 11195331 11195618 -191889914 - AluSx SINE Alu -16 296 24 10390 98 25 16 chr5 11196235 11197819 -191887713 - HERVH LTR ERV1 -6114 1599 1 3473 62 5 7 chr5 11197821 11198270 -191887262 - LTR7 LTR ERV1 -2 448 1 2478 144 10 5 chr5 11198270 11198659 -191886873 - L1PA15 LINE L1 -260 5905 5515 321 96 19 0 chr5 11198656 11198708 -191886824 + L1PA15 LINE L1 5474 5526 -642 * 694 292 116 10 chr5 11198961 11199411 -191886121 + MLT1G LTR MaLR 13 549 -41 626 349 7 0 chr5 11199652 11199921 -191885611 - L1ME LINE L1 -356 5765 5495 1986 108 36 29 chr5 11200325 11200631 -191884901 + AluSx SINE Alu 1 308 -4 9935 96 11 12 chr5 11200832 11202253 -191883279 + HERVH LTR ERV1 1569 2987 -4726 812 169 20 0 chr5 11202247 11202395 -191883137 + HERVH LTR ERV1 3140 3290 -4423 * 3334 122 6 2 chr5 11202385 11202885 -191882647 + HERVH LTR ERV1 3492 3993 -3720 4386 144 3 1 chr5 11202887 11203548 -191881984 + HERVH LTR ERV1 4488 5149 -2564 902 113 7 13 chr5 11203549 11203699 -191881833 + HERVH LTR ERV1 5600 5748 -1965 1850 74 8 0 chr5 11203730 11203988 -191881544 + HERVH LTR ERV1 7429 7688 -25 1603 143 32 11 chr5 11203997 11204018 -191881514 + L1PA15 LINE L1 5880 5899 -266 3482 64 0 9 chr5 11204018 11204470 -191881062 + LTR7 LTR ERV1 1 448 -2 1603 143 32 11 chr5 11204470 11204728 -191880804 + L1PA15 LINE L1 5899 6165 0 2534 153 70 98 chr5 11205257 11205990 -191879542 - LTR8A LTR ERV1 0 691 1 420 167 0 0 chr5 11206540 11206606 -191878926 + MER41C LTR ERV1 1 66 -488 273 111 0 0 chr5 11206602 11206638 -191878894 + MER41C LTR ERV1 25 60 -494 * 300 116 23 0 chr5 11206638 11206681 -191878851 + MER41C LTR ERV1 23 66 -488 243 111 28 0 chr5 11206677 11206713 -191878819 + MER41C LTR ERV1 25 61 -493 * 3138 131 82 0 chr5 11206713 11207203 -191878329 + MER41C LTR ERV1 25 554 0 251 237 31 82 chr5 11207229 11207326 -191878206 + MIR SINE MIR 92 183 -79 248 278 67 0 chr5 11207426 11207516 -191878016 - MER117 DNA MER1_type -37 160 65 2279 98 3 0 chr5 11208235 11208541 -191876991 - AluSp SINE Alu -6 307 1 2505 116 16 8 chr5 11208943 11209315 -191876217 + THE1C LTR MaLR 1 375 0 10410 116 30 15 chr5 11209315 11210872 -191874660 + THE1C-int LTR MaLR 1 1580 0 2560 116 14 5 chr5 11210872 11211243 -191874289 + THE1C LTR MaLR 1 374 -1 243 231 81 46 chr5 11211644 11211817 -191873715 + L1MCc LINE L1 1291 1469 -4954 320 241 43 43 chr5 11211942 11212058 -191873474 + L1MCc LINE L1 1907 2022 -4919 216 0 0 0 chr5 11212060 11212084 -191873448 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 5492 116 39 5 chr5 11212086 11212765 -191872767 - L1PA13 LINE L1 -11 6152 5497 2249 87 3 6 chr5 11212765 11213077 -191872455 - AluY SINE Alu 0 311 1 5492 116 39 5 chr5 11213077 11213786 -191871746 - L1PA13 LINE L1 -666 5497 4757 22 0 0 0 chr5 11213929 11213951 -191871581 + AT_rich Low_complexity Low_complexity 1 22 0 1638 163 3 26 chr5 11214085 11214391 -191871141 - AluJo SINE Alu -13 299 1 316 266 36 27 chr5 11214414 11214525 -191871007 + MIR SINE MIR 16 122 -93 3356 286 171 29 chr5 11214550 11216506 -191869026 + L2 LINE L2 1060 3312 -1 293 230 127 56 chr5 11217119 11217245 -191868287 - MIR3 SINE MIR -51 157 23 215 234 78 52 chr5 11217784 11217861 -191867671 + MIR SINE MIR 61 139 -69 698 208 127 34 chr5 11217995 11218382 -191867150 + MER31B LTR ERV1 1 543 0 1344 235 87 20 chr5 11220133 11220571 -191864961 + MLT1C LTR MaLR 1 467 0 1702 231 62 9 chr5 11221120 11221557 -191863975 - MLT1C LTR MaLR 0 467 8 23 33 0 0 chr5 11223308 11223338 -191862194 + AT_rich Low_complexity Low_complexity 1 30 0 1528 294 63 10 chr5 11223932 11224157 -191861375 - L1ME3A LINE L1 0 6170 5946 579 292 153 44 chr5 11224157 11224686 -191860846 - L1MB4 LINE L1 -259 5921 5451 2879 158 68 2 chr5 11224686 11225213 -191860319 - MER34B LTR ERV1 0 565 4 579 292 153 44 chr5 11225213 11225779 -191859753 - L1MB4 LINE L1 -729 5451 4685 22 0 0 0 chr5 11225803 11225825 -191859707 + AT_rich Low_complexity Low_complexity 1 22 0 1929 109 37 3 chr5 11225827 11226121 -191859411 - AluSg SINE Alu -6 304 1 798 214 11 21 chr5 11226139 11226326 -191859206 - MLT1A2 LTR MaLR -1 373 189 187 354 12 24 chr5 11234094 11234176 -191851356 + L2 LINE L2 2875 2955 -359 2620 78 8 30 chr5 11234662 11235034 -191850498 - THE1B LTR MaLR 0 364 1 180 0 0 0 chr5 11235903 11235923 -191849609 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 323 261 30 36 chr5 11236531 11236696 -191848836 - L1ME4a LINE L1 -1 6120 5957 383 302 188 0 chr5 11236907 11237056 -191848476 - MIR SINE MIR -19 243 67 2129 96 7 3 chr5 11237216 11237518 -191848014 - AluSg SINE Alu -7 303 1 278 261 0 29 chr5 11239206 11239275 -191846257 + L2 LINE L2 3239 3305 -8 1668 182 72 36 chr5 11240254 11240617 -191844915 + MLT1C LTR MaLR 1 376 -91 907 167 94 42 chr5 11240616 11240808 -191844724 + MLT1C LTR MaLR 266 467 0 * 1805 89 15 74 chr5 11243294 11243618 -191841914 + AluY SINE Alu 1 305 -6 1695 113 19 30 chr5 11243921 11244223 -191841309 + AluSq SINE Alu 24 322 0 1831 151 46 40 chr5 11245159 11245530 -191840002 + THE1C LTR MaLR 1 373 -2 544 126 0 23 chr5 11245536 11245623 -191839909 + THE1C-int LTR MaLR 4 88 -1492 * 1355 106 21 0 chr5 11245597 11245785 -191839747 + THE1C-int LTR MaLR 891 1082 -498 241 167 0 42 chr5 11245785 11245833 -191839699 + MSTB LTR MaLR 381 426 0 933 240 4 39 chr5 11246041 11246270 -191839262 + MER58A DNA MER1_type 4 224 0 259 366 43 6 chr5 11246331 11246495 -191839037 + MIR SINE MIR 67 236 -26 1394 157 15 168 chr5 11247427 11247480 -191838052 - MLT2D LTR ERVL -3 394 335 261 0 0 0 chr5 11247480 11247509 -191838023 + (CA)n Simple_repeat Simple_repeat 2 30 0 1394 157 15 168 chr5 11247509 11247789 -191837743 - MLT2D LTR ERVL -62 335 111 5262 165 30 24 chr5 11247803 11249063 -191836469 - L1MA7 LINE L1 -5 6286 5020 565 158 61 0 chr5 11249065 11249179 -191836353 - MLT2D LTR ERVL -293 121 1 2076 177 3 0 chr5 11249183 11249527 -191836005 - MER7A DNA MER2_type 0 346 4 428 328 62 29 chr5 11249830 11250071 -191835461 + MIR SINE MIR 2 250 -12 472 252 171 85 chr5 11251064 11251499 -191834033 + L1ME LINE L1 858 1339 -5033 317 248 69 0 chr5 11251521 11251647 -191833885 + L1ME LINE L1 1269 1568 -4977 2493 255 90 25 chr5 11252689 11253677 -191831855 - L1MC4a LINE L1 -35 7773 6722 273 260 65 32 chr5 11255286 11255409 -191830123 - L2 LINE L2 -25 3288 3162 2269 70 0 10 chr5 11255857 11256157 -191829375 - AluY SINE Alu -14 297 1 181 295 62 47 chr5 11256179 11256308 -191829224 - L2 LINE L2 -725 2589 2459 320 247 84 101 chr5 11256622 11256800 -191828732 - HAL1 LINE L1 -1231 1276 1102 222 237 0 82 chr5 11256869 11256966 -191828566 + C-rich Low_complexity Low_complexity 3 91 0 2089 109 13 3 chr5 11260604 11260906 -191824626 + AluSx SINE Alu 1 305 -7 184 329 73 12 chr5 11261273 11261355 -191824177 - MIR SINE MIR -79 183 97 2004 106 0 4 chr5 11262676 11262951 -191822581 - AluSg SINE Alu -19 291 18 700 276 61 82 chr5 11263353 11264009 -191821523 + L1MEd LINE L1 457 1098 -5021 2035 190 55 65 chr5 11264597 11265102 -191820430 + MLT2B3 LTR ERVL 1 500 -54 195 175 0 0 chr5 11265105 11265162 -191820370 + A-rich Low_complexity Low_complexity 1 57 0 393 121 0 30 chr5 11265163 11265229 -191820303 + MLT2A2 LTR ERVL 390 453 0 786 237 62 126 chr5 11266191 11267027 -191818505 + L1ME2 LINE L1 854 1851 -4756 * 1583 192 60 6 chr5 11267016 11267365 -191818167 + L1MD1 LINE L1 5875 6242 0 358 284 5 59 chr5 11267361 11267451 -191818081 + L1ME2 LINE L1 1839 1932 -4675 * 1942 151 0 6 chr5 11267451 11267763 -191817769 + AluSx SINE Alu 1 310 -2 358 284 5 59 chr5 11267763 11267876 -191817656 + L1ME2 LINE L1 1932 2031 -4576 1934 170 89 25 chr5 11268267 11268672 -191816860 + Tigger2a DNA MER2_type 1 431 -3 603 238 72 18 chr5 11268724 11268947 -191816585 + L1ME2 LINE L1 5209 5443 -983 904 188 4 2 chr5 11268953 11269199 -191816333 + AluJb SINE Alu 2 295 -17 1396 254 48 8 chr5 11269202 11269719 -191815813 + L1ME2 LINE L1 5450 5987 -457 414 349 9 5 chr5 11269791 11270006 -191815526 + L1ME2 LINE L1 6122 6337 -107 1955 197 48 5 chr5 11270375 11270771 -191814761 + MLT2C2 LTR ERVL 4 416 -48 183 184 0 0 chr5 11270776 11270814 -191814718 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 249 65 0 0 chr5 11270822 11270853 -191814679 - MLT2C2 LTR ERVL 0 464 434 266 174 0 0 chr5 11270873 11270919 -191814613 + MLT2C2 LTR ERVL 509 554 0 342 343 30 18 chr5 11273278 11273447 -191812085 + MIR SINE MIR 86 256 -6 21 0 0 0 chr5 11275088 11275109 -191810423 + AT_rich Low_complexity Low_complexity 1 21 0 1854 108 36 33 chr5 11275230 11275536 -191809996 - AluSx SINE Alu -5 307 1 622 349 7 0 chr5 11275941 11276210 -191809322 + L1ME LINE L1 5495 5765 -356 698 261 113 8 chr5 11276449 11276706 -191808826 - MLT1G LTR MaLR -41 549 266 275 243 43 0 chr5 11276829 11276899 -191808633 - MLT1G LTR MaLR -505 85 13 321 96 19 0 chr5 11277151 11277203 -191808329 - L1PA15 LINE L1 -642 5526 5474 3957 136 20 15 chr5 11277203 11277589 -191807943 + L1PA15 LINE L1 5515 5910 -255 3492 64 0 9 chr5 11277589 11278041 -191807491 + LTR7 LTR ERV1 1 448 -2 3957 136 20 15 chr5 11278041 11278299 -191807233 + L1PA15 LINE L1 5910 6165 0 2672 152 67 97 chr5 11278828 11279563 -191805969 - LTR8A LTR ERV1 0 691 1 238 345 9 9 chr5 11279863 11279973 -191805559 + CT-rich Low_complexity Low_complexity 1 110 0 370 274 12 41 chr5 11280006 11280216 -191805316 + CT-rich Low_complexity Low_complexity 1 203 0 302 229 57 0 chr5 11281151 11281221 -191804311 - MER5A DNA MER1_type -71 118 45 984 118 11 17 chr5 11282005 11282011 -191803521 + (TTCC)n Simple_repeat Simple_repeat 1 182 0 984 118 11 17 chr5 11282011 11282189 -191803343 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 327 342 185 14 chr5 11283542 11284056 -191801476 + L2 LINE L2 2174 2775 -539 237 286 69 51 chr5 11284131 11284306 -191801226 + L2 LINE L2 2912 3089 -224 21 0 0 0 chr5 11284856 11284877 -191800655 + AT_rich Low_complexity Low_complexity 1 21 0 395 60 0 150 chr5 11286766 11286899 -191798633 + AluY SINE Alu 1 113 -188 277 43 43 0 chr5 11287159 11287206 -191798326 + (CA)n Simple_repeat Simple_repeat 2 50 0 1096 148 9 33 chr5 11290698 11290908 -191794624 + AluSx SINE Alu 11 215 -97 882 122 27 40 chr5 11293630 11293778 -191791754 - THE1B LTR MaLR -218 146 1 370 257 88 27 chr5 11293814 11293962 -191791570 + MIR SINE MIR 58 214 -48 1614 238 60 47 chr5 11294387 11294854 -191790678 + L1M4 LINE L1 14 486 -6373 3078 216 90 27 chr5 11295001 11296060 -191789472 + L1M4 LINE L1 5083 6219 -766 1613 82 41 15 chr5 11301424 11301569 -191783963 - AluY SINE Alu -36 275 118 301 43 43 0 chr5 11301569 11301616 -191783916 + (TG)n Simple_repeat Simple_repeat 2 50 0 1613 82 41 15 chr5 11301616 11301738 -191783794 - AluY SINE Alu -193 118 1 236 314 97 0 chr5 11302315 11302439 -191783093 - MIR SINE MIR -68 194 59 229 301 57 24 chr5 11302371 11302494 -191783038 - L2 LINE L2 -355 2959 2833 * 216 184 0 0 chr5 11304708 11304746 -191780786 + GA-rich Low_complexity Low_complexity 1 38 0 2175 181 103 30 chr5 11308350 11308811 -191776721 - THE1-int LTR MaLR -575 1005 498 2088 154 0 0 chr5 11308811 11309122 -191776410 - AluSx SINE Alu -1 311 1 2175 181 103 30 chr5 11309122 11309192 -191776340 - THE1-int LTR MaLR -1082 498 435 3133 191 50 24 chr5 11311967 11312633 -191772899 - MLT1A2-int LTR MaLR -1052 683 1 309 259 82 0 chr5 11312663 11312748 -191772784 - MLT2B1 LTR ERVL -59 461 370 1627 115 83 40 chr5 11312759 11313037 -191772495 + MER4D LTR ERV1 141 430 -442 221 95 0 24 chr5 11315802 11315844 -191769688 + (GAAAA)n Simple_repeat Simple_repeat 4 44 0 299 245 19 19 chr5 11316352 11316458 -191769074 + (TA)n Simple_repeat Simple_repeat 2 107 0 610 244 0 8 chr5 11316474 11316601 -191768931 - FLAM_A SINE Alu -3 130 5 1310 169 19 8 chr5 11317257 11317518 -191768014 + ERVL-B1 LTR ERVL 5492 5755 -9 1877 209 95 35 chr5 11317520 11317949 -191767583 + MLT2B1 LTR ERVL 1 460 -60 186 43 0 0 chr5 11317949 11317972 -191767560 + (TC)n Simple_repeat Simple_repeat 2 24 0 1877 209 95 35 chr5 11317972 11317996 -191767536 + MLT2B1 LTR ERVL 460 481 -39 1401 270 87 34 chr5 11318498 11319946 -191765586 + L1MEc LINE L1 1313 2800 -3415 188 237 34 17 chr5 11320379 11320438 -191765094 + MIR SINE MIR 87 146 -62 1274 226 43 48 chr5 11320673 11321045 -191764487 - MLT1A2 LTR MaLR -1 373 4 806 185 14 7 chr5 11321675 11321821 -191763711 - AluJb SINE Alu -162 150 4 6582 68 12 19 chr5 11321874 11323046 -191762486 - L1PA7 LINE L1 -2 6152 4997 265 224 45 0 chr5 11323888 11323955 -191761577 - MIR SINE MIR -91 171 102 3198 177 2 104 chr5 11324425 11325311 -191760221 + L1P LINE L1 3843 4638 -1508 219 223 42 42 chr5 11325587 11325753 -191759779 + (CACAC)n Simple_repeat Simple_repeat 5 170 0 460 296 115 27 chr5 11326176 11326848 -191758684 + L1MEd LINE L1 965 1737 -4573 1955 159 0 7 chr5 11326990 11327292 -191758240 - AluJb SINE Alu -12 300 1 294 260 52 0 chr5 11329101 11329197 -191756335 + MER5A DNA MER1_type 9 109 -80 7224 92 14 11 chr5 11329690 11330668 -191754864 + MSTA-int LTR MaLR 592 1572 -8 572 171 0 27 chr5 11330694 11330805 -191754727 + MSTA LTR MaLR 9 116 -312 416 143 0 0 chr5 11330792 11330855 -191754677 + MSTA LTR MaLR 366 428 0 * 244 354 77 0 chr5 11330855 11330985 -191754547 - MIR SINE MIR -115 147 8 2639 113 10 3 chr5 11331420 11331811 -191753721 - L1PA11 LINE L1 -235 5939 5546 901 218 32 18 chr5 11331813 11332033 -191753499 - MIR SINE MIR -35 227 5 529 323 11 5 chr5 11333355 11333541 -191751991 - MIR SINE MIR -48 214 28 525 233 125 8 chr5 11333648 11333768 -191751764 + MER63 DNA MER1_type 1 760 -302 3052 66 47 0 chr5 11334213 11334697 -191750835 - L1P2 LINE L1 -682 5473 4966 1525 107 5 5 chr5 11334697 11334913 -191750619 + THE1C LTR MaLR 160 375 0 248 175 87 87 chr5 11335131 11335234 -191750298 + L3 LINE CR1 1192 1294 -283 1906 129 11 0 chr5 11335235 11335513 -191750019 - AluSx SINE Alu -1 311 31 199 0 0 61 chr5 11335939 11335972 -191749560 + (TG)n Simple_repeat Simple_repeat 2 32 0 272 269 175 18 chr5 11336544 11336715 -191748817 + L2 LINE L2 2147 2344 -970 347 256 46 73 chr5 11336823 11337042 -191748490 + L1MC4 LINE L1 7823 8035 -7 285 100 0 0 chr5 11337075 11337115 -191748417 + Alu SINE Alu 5 44 -256 200 57 0 57 chr5 11337311 11337346 -191748186 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 258 247 185 0 chr5 11338655 11338736 -191746796 + MARNA DNA Mariner 265 360 -226 21 82 0 0 chr5 11338761 11338810 -191746722 + AT_rich Low_complexity Low_complexity 1 49 0 243 253 13 27 chr5 11338828 11338903 -191746629 - Charlie4a DNA MER1_type 0 508 435 851 144 0 0 chr5 11338918 11339036 -191746496 + FLAM_C SINE Alu 1 118 -25 227 247 12 0 chr5 11339074 11339155 -191746377 - Charlie4a DNA MER1_type -71 437 356 2162 122 3 3 chr5 11339155 11339459 -191746073 - AluSx SINE Alu -8 304 1 790 176 0 15 chr5 11339581 11339712 -191745820 - AluJb SINE Alu -99 213 85 415 257 115 11 chr5 11339712 11339895 -191745637 - Charlie4a DNA MER1_type -147 361 160 756 37 9 18 chr5 11340461 11340570 -191744962 + AluY SINE Alu 200 307 -4 638 318 17 13 chr5 11341330 11341566 -191743966 - MIR SINE MIR -25 237 1 3381 120 53 18 chr5 11342827 11343336 -191742196 + MER1A DNA MER1_type 1 527 0 2034 114 0 57 chr5 11344157 11344473 -191741059 - AluSc SINE Alu -11 298 1 9334 46 17 2 chr5 11345034 11346213 -191739319 - L1PA13 LINE L1 -3396 3401 2197 181 267 0 0 chr5 11347962 11348022 -191737510 - L2 LINE L2 -151 3162 3103 1029 203 30 9 chr5 11348055 11348287 -191737245 + MLT2C1 LTR ERVL 1 237 -160 1355 206 81 79 chr5 11348955 11349449 -191736083 + Charlie1b DNA MER1_type 7 501 -22 218 267 15 30 chr5 11349764 11349895 -191735637 + (CACAA)n Simple_repeat Simple_repeat 5 133 0 4442 101 44 35 chr5 11350695 11351377 -191734155 + LTR12 LTR ERV1 1 688 0 239 354 31 8 chr5 11351394 11351524 -191734008 - MIR SINE MIR -64 198 66 216 0 0 0 chr5 11351945 11351969 -191733563 + (A)n Simple_repeat Simple_repeat 1 24 0 450 231 388 0 chr5 11353145 11353483 -191732049 + LTR50 LTR ERVL 2 470 -325 225 299 0 15 chr5 11354464 11354531 -191731001 + MER5A DNA MER1_type 7 72 -117 373 82 0 0 chr5 11354535 11354584 -191730948 + HY4 scRNA scRNA 1 49 -44 260 271 0 0 chr5 11354584 11354643 -191730889 + MER5A DNA MER1_type 64 122 -67 2161 84 0 0 chr5 11354695 11354958 -191730574 - AluSc SINE Alu -7 302 40 664 268 188 29 chr5 11357384 11357794 -191727738 - L1ME2 LINE L1 -67 6097 5623 1382 315 40 30 chr5 11357795 11358196 -191727336 - MLT1G1 LTR MaLR -66 529 120 2136 191 14 3 chr5 11358196 11358553 -191726979 + MLT1A1 LTR MaLR 1 361 -4 1382 315 40 30 chr5 11358553 11358675 -191726857 - MLT1G1 LTR MaLR -475 120 1 267 257 38 19 chr5 11358895 11359000 -191726532 + MLT1F1 LTR MaLR 1 107 -460 2168 134 9 170 chr5 11359219 11359435 -191726097 + Charlie1 DNA MER1_type 2198 2447 -314 1527 179 10 56 chr5 11359435 11359737 -191725795 + AluJo SINE Alu 1 288 -24 228 67 0 0 chr5 11359747 11359777 -191725755 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2168 134 9 170 chr5 11359777 11359847 -191725685 + Charlie1 DNA MER1_type 2457 2537 -224 2125 127 7 10 chr5 11359847 11360154 -191725378 - AluSx SINE Alu -6 306 1 2168 134 9 170 chr5 11360154 11360396 -191725136 + Charlie1 DNA MER1_type 2537 2614 -147 2302 100 0 0 chr5 11360396 11360687 -191724845 - AluSx SINE Alu -21 291 1 2168 134 9 170 chr5 11360687 11360809 -191724723 + Charlie1 DNA MER1_type 2614 2754 -7 386 336 0 16 chr5 11361768 11361896 -191723636 + L2 LINE L2 3188 3313 0 333 68 0 0 chr5 11362169 11362213 -191723319 + (TA)n Simple_repeat Simple_repeat 2 45 0 1074 55 0 0 chr5 11363038 11363166 -191722366 + AluY SINE Alu 174 301 -10 5163 154 35 11 chr5 11363166 11364300 -191721232 - L1MB3 LINE L1 -10 6173 5015 300 300 36 70 chr5 11366051 11366381 -191719151 + L1MEc LINE L1 498 816 -5580 313 243 97 19 chr5 11366386 11366489 -191719043 + L1MEc LINE L1 1056 1166 -5230 2630 208 65 50 chr5 11366502 11367099 -191718433 - MER82 DNA MER2_type -46 607 2 1741 237 71 33 chr5 11367496 11368074 -191717458 + L1ME1 LINE L1 5562 6161 -5 215 233 0 0 chr5 11369302 11369345 -191716187 + L2 LINE L2 1545 1587 -1727 847 258 125 31 chr5 11371750 11372134 -191713398 + L1MD3 LINE L1 5527 5946 -2049 23 78 0 0 chr5 11372151 11372202 -191713330 + AT_rich Low_complexity Low_complexity 1 51 0 2521 76 0 0 chr5 11372888 11373192 -191712340 + AluY SINE Alu 1 304 -7 297 272 184 53 chr5 11373196 11373402 -191712130 + L2 LINE L2 3076 3308 -5 828 174 95 26 chr5 11373478 11373668 -191711864 + MER105 DNA DNA 1 203 -1 186 317 0 0 chr5 11374622 11374682 -191710850 + MIR SINE MIR 57 116 -146 2323 194 26 7 chr5 11375371 11375788 -191709744 - MSTB LTR MaLR 0 426 2 184 275 0 0 chr5 11375909 11375949 -191709583 - L3b LINE CR1 -13 1570 1531 216 111 0 0 chr5 11376003 11376039 -191709493 + (TTTTTA)n Simple_repeat Simple_repeat 2 37 0 15203 86 26 3 chr5 11376121 11379048 -191706484 + L1PA8 LINE L1 3161 6152 -20 238 277 175 15 chr5 11379050 11379187 -191706345 - L3 LINE CR1 -193 1384 1226 2555 55 7 0 chr5 11379196 11379505 -191706027 - AluY SINE Alu 0 311 1 284 341 11 21 chr5 11380452 11380570 -191704962 - MER5B DNA MER1_type -4 174 65 1552 217 45 12 chr5 11380632 11380969 -191704563 + MER7A DNA MER2_type 1 346 0 342 0 0 0 chr5 11381734 11381772 -191703760 + (CA)n Simple_repeat Simple_repeat 2 39 0 2336 80 0 22 chr5 11381945 11382258 -191703274 - AluSp SINE Alu -7 306 1 196 352 28 0 chr5 11382543 11382614 -191702918 - MIR SINE MIR -82 126 54 233 291 0 0 chr5 11383690 11383745 -191701787 + MIR SINE MIR 95 149 -113 3278 211 114 20 chr5 11384097 11385088 -191700444 - Charlie1a DNA MER1_type -49 1406 323 1331 216 172 13 chr5 11385218 11385695 -191699837 - Charlie1a DNA MER1_type -602 853 301 664 269 55 0 chr5 11385701 11385902 -191699630 - Charlie1a DNA MER1_type -1184 271 60 232 303 92 7 chr5 11387395 11387547 -191697985 - MIR SINE MIR -78 184 20 23 0 0 0 chr5 11387566 11387589 -191697943 + AT_rich Low_complexity Low_complexity 1 23 0 1120 178 50 9 chr5 11387808 11388027 -191697505 - MER46A DNA MER2_type 0 236 9 1702 123 24 0 chr5 11388244 11388497 -191697035 - AluSp SINE Alu -54 259 1 200 86 52 17 chr5 11388527 11388585 -191696947 + (TA)n Simple_repeat Simple_repeat 1 60 0 1314 179 0 0 chr5 11388597 11388804 -191696728 + AluSx SINE Alu 1 207 -105 410 143 33 44 chr5 11388804 11388895 -191696637 - L1MA7 LINE L1 -252 6039 5950 1473 201 144 17 chr5 11388899 11389403 -191696129 - Charlie1 DNA MER1_type -884 1877 5 2954 171 54 139 chr5 11390036 11390382 -191695150 + L1MB5 LINE L1 5298 5672 -502 1686 70 33 5 chr5 11390382 11390597 -191694935 + AluSq SINE Alu 1 221 -92 2954 171 54 139 chr5 11390597 11391208 -191694324 + L1MB5 LINE L1 5672 6174 0 557 133 11 22 chr5 11391206 11391296 -191694236 - L1MD1 LINE L1 -53 6189 6101 * 1296 97 0 0 chr5 11391297 11391462 -191694070 + AluSx SINE Alu 2 166 -146 320 214 14 0 chr5 11391462 11391532 -191694000 - L1MD2 LINE L1 -144 6215 6145 543 191 56 0 chr5 11391534 11391660 -191693872 + MER58 DNA MER1_type 86 218 -2202 1163 149 58 10 chr5 11391660 11391868 -191693664 - AluJo SINE Alu -2 310 93 2128 258 29 51 chr5 11392151 11392218 -191693314 + L1MC4 LINE L1 7213 7280 -762 2605 127 8 3 chr5 11392218 11392579 -191692953 + THE1B LTR MaLR 1 363 -1 2128 258 29 51 chr5 11392579 11393071 -191692461 + L1MC4 LINE L1 7280 7733 -309 2139 110 3 0 chr5 11393071 11393353 -191692179 + AluSq SINE Alu 5 287 -26 2128 258 29 51 chr5 11393353 11393650 -191691882 + L1MC4 LINE L1 7733 8035 -7 1830 127 0 31 chr5 11394657 11394981 -191690551 + L1PA5 LINE L1 5841 6154 0 534 299 118 14 chr5 11395153 11395364 -191690168 + MIR SINE MIR 20 252 -10 1016 205 132 99 chr5 11395549 11395913 -191689619 + MLT1D LTR MaLR 5 451 -116 2131 131 3 0 chr5 11395913 11396210 -191689322 - AluSx SINE Alu -14 298 1 1016 205 132 99 chr5 11396210 11396323 -191689209 + MLT1D LTR MaLR 451 559 -8 604 116 16 41 chr5 11396668 11396789 -191688743 - AluSg1 SINE Alu -180 129 12 621 224 128 98 chr5 11397308 11397391 -191688141 - MLT1J LTR MaLR -3 508 429 1920 157 0 10 chr5 11397391 11397691 -191687841 + AluJb SINE Alu 1 297 -15 621 224 128 98 chr5 11397691 11397973 -191687559 - MLT1J LTR MaLR -82 429 132 4031 109 78 10 chr5 11398087 11398693 -191686839 + THE1C-int LTR MaLR 934 1580 0 2347 108 54 38 chr5 11398693 11398842 -191686690 + THE1C LTR MaLR 1 146 -229 1822 149 0 23 chr5 11398842 11399143 -191686389 - AluSg SINE Alu -16 294 1 2347 108 54 38 chr5 11399143 11399362 -191686170 + THE1C LTR MaLR 146 375 0 234 0 0 0 chr5 11399401 11399427 -191686105 + (TG)n Simple_repeat Simple_repeat 2 27 0 260 204 82 20 chr5 11399465 11399563 -191685969 + ERVL LTR ERVL 5474 5577 -187 255 61 0 0 chr5 11400239 11400272 -191685260 + (TAA)n Simple_repeat Simple_repeat 1 33 0 395 183 62 42 chr5 11400483 11400600 -191684932 + MIR SINE MIR 33 149 -62 2298 109 0 0 chr5 11400664 11400968 -191684564 - AluSx SINE Alu -8 304 1 2198 74 0 4 chr5 11402386 11402656 -191682876 - AluSx SINE Alu -43 269 1 1015 209 34 34 chr5 11402981 11403216 -191682316 + MIR SINE MIR 28 262 0 254 248 143 8 chr5 11403447 11403580 -191681952 - L2 LINE L2 -1159 2155 2005 236 375 0 0 chr5 11405236 11405316 -191680216 - MIR3 SINE MIR -21 187 108 368 310 10 0 chr5 11405524 11405624 -191679908 + MIR SINE MIR 162 262 0 2513 128 34 0 chr5 11405733 11406085 -191679447 + THE1B LTR MaLR 1 364 0 299 192 51 39 chr5 11406615 11406693 -191678839 + MLT2D LTR ERVL 270 348 -66 2479 123 65 10 chr5 11406823 11407222 -191678310 + MSTA LTR MaLR 1 421 -7 228 327 127 0 chr5 11408554 11408664 -191676868 + L2 LINE L2 3149 3272 0 2340 77 6 29 chr5 11410057 11410369 -191675163 - AluSx SINE Alu -7 305 1 1531 165 27 44 chr5 11410372 11410669 -191674863 + AluJo SINE Alu 12 303 -9 181 269 58 0 chr5 11410724 11410776 -191674756 + MIR3 SINE MIR 149 203 -5 762 114 8 16 chr5 11411191 11411314 -191674218 - THE1C-int LTR MaLR -1457 123 2 2469 129 13 24 chr5 11411315 11411694 -191673838 - THE1C LTR MaLR 0 375 1 1679 115 27 51 chr5 11411719 11412015 -191673517 + HSMAR2 DNA Mariner 2 290 -1012 * 2284 153 0 11 chr5 11412012 11412384 -191673148 + HSMAR2 DNA Mariner 186 553 -749 2970 140 23 47 chr5 11412384 11412665 -191672867 - L1P4 LINE L1 -549 5616 5330 1669 197 0 13 chr5 11412665 11412964 -191672568 + AluJb SINE Alu 3 297 -15 2970 140 23 47 chr5 11412964 11413589 -191671943 - L1P4 LINE L1 -835 5330 4726 773 256 55 35 chr5 11415976 11416230 -191669302 + MIR SINE MIR 2 260 -2 391 356 55 36 chr5 11416399 11416652 -191668880 - L1M4 LINE L1 -2193 3953 3696 288 0 0 0 chr5 11416656 11416688 -191668844 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 33 0 0 chr5 11416713 11416743 -191668789 + AT_rich Low_complexity Low_complexity 1 30 0 28 61 0 0 chr5 11418556 11418605 -191666927 + AT_rich Low_complexity Low_complexity 1 49 0 533 256 43 89 chr5 11421984 11422242 -191663290 - L1MC4 LINE L1 -1339 6703 6458 1850 130 79 0 chr5 11422966 11423243 -191662289 - AluJo SINE Alu -13 299 1 838 241 10 39 chr5 11423285 11423492 -191662040 + MER63A DNA MER1_type 1 201 -9 256 278 120 0 chr5 11425468 11425576 -191659956 - L1ME4a LINE L1 -2 6119 5999 254 340 124 18 chr5 11427599 11428228 -191657304 + L1M4 LINE L1 4118 4813 -1333 22 0 0 0 chr5 11428228 11428250 -191657282 + AT_rich Low_complexity Low_complexity 1 22 0 352 155 36 0 chr5 11429360 11429444 -191656088 + (TATATG)n Simple_repeat Simple_repeat 1 87 0 1037 181 5 26 chr5 11429451 11429644 -191655888 - AluSg/x SINE Alu -14 298 110 2336 135 44 95 chr5 11429674 11430080 -191655452 + LTR54 LTR ERV1 27 452 -58 1528 129 98 59 chr5 11430080 11430367 -191655165 - AluJo SINE Alu -14 298 1 2336 135 44 95 chr5 11430367 11430428 -191655104 + LTR54 LTR ERV1 452 469 -41 1721 154 3 23 chr5 11430428 11430734 -191654798 + AluSx SINE Alu 1 300 -12 2336 135 44 95 chr5 11430734 11430770 -191654762 + LTR54 LTR ERV1 469 505 -5 227 197 28 42 chr5 11431282 11431353 -191654179 + T-rich Low_complexity Low_complexity 3 72 0 12565 55 15 1 chr5 11431430 11433078 -191652454 + L1P LINE L1 3161 4831 -1315 439 266 0 43 chr5 11433273 11433461 -191652071 + A-rich Low_complexity Low_complexity 1 180 0 312 281 96 44 chr5 11433579 11433714 -191651818 - MER5A DNA MER1_type -1 188 47 871 160 48 43 chr5 11433715 11433903 -191651629 + MER5A DNA MER1_type 1 189 0 26 30 0 0 chr5 11434018 11434051 -191651481 + AT_rich Low_complexity Low_complexity 1 33 0 2160 78 53 0 chr5 11435150 11435431 -191650101 - AluSp SINE Alu -13 300 5 186 43 0 0 chr5 11436689 11436712 -191648820 + (GA)n Simple_repeat Simple_repeat 1 23 0 360 281 91 16 chr5 11437129 11437250 -191648282 - L3 LINE CR1 -73 1504 1375 2384 184 23 12 chr5 11437331 11437810 -191647722 + L1 LINE L1 4416 4899 -1247 739 269 64 42 chr5 11437854 11438118 -191647414 + MSTD LTR MaLR 36 305 -91 875 53 0 26 chr5 11438610 11438758 -191646774 - AluY SINE Alu 0 311 180 486 300 112 15 chr5 11438786 11439046 -191646486 - L3 LINE CR1 -306 1271 987 2284 158 42 0 chr5 11439185 11439590 -191645942 + L1 LINE L1 4672 5093 -1053 323 284 107 58 chr5 11439779 11440004 -191645528 - MLT1K LTR MaLR -342 246 11 4995 52 41 11 chr5 11440056 11440714 -191644818 - LTR17 LTR ERV1 0 780 103 2118 158 26 123 chr5 11440838 11441408 -191644124 - L1MCa LINE L1 -5467 959 445 524 273 153 0 chr5 11442713 11442929 -191642603 + MIR SINE MIR 1 249 -13 2171 177 28 8 chr5 11443462 11443858 -191641674 - MER65C LTR ERV1 -57 404 1 198 232 87 58 chr5 11443860 11443929 -191641603 + MIR SINE MIR 82 152 -110 2458 63 0 3 chr5 11444524 11444823 -191640709 - AluY SINE Alu -11 300 3 272 215 9 109 chr5 11446822 11446961 -191638571 + L1MDb LINE L1 1194 1316 -5080 249 262 39 29 chr5 11446934 11447037 -191638495 + L1M4 LINE L1 3696 3799 -2607 * 445 175 0 0 chr5 11447046 11447109 -191638423 - AluJ/FLAM SINE Alu -248 64 2 2239 244 52 60 chr5 11447110 11447343 -191638189 + L1M4 LINE L1 3804 4037 -2369 2140 115 3 16 chr5 11447343 11447648 -191637884 + AluSx SINE Alu 1 301 -11 2239 244 52 60 chr5 11447648 11448061 -191637471 + L1M4 LINE L1 4037 4444 -1962 1782 115 19 8 chr5 11448061 11448321 -191637211 - AluSq SINE Alu -50 263 1 2239 244 52 60 chr5 11448321 11448554 -191636978 + L1M4 LINE L1 4444 4677 -1729 517 283 147 5 chr5 11448744 11448935 -191636597 + MIR SINE MIR 19 236 -26 2107 98 7 20 chr5 11448995 11449291 -191636241 - AluSg SINE Alu -18 292 1 1879 120 17 17 chr5 11449988 11450280 -191635252 + AluSx SINE Alu 1 292 -20 1561 157 15 11 chr5 11450600 11450862 -191634670 + AluJb SINE Alu 39 301 -11 505 295 170 18 chr5 11450957 11451181 -191634351 - MIR SINE MIR -3 259 2 335 126 53 53 chr5 11451218 11451313 -191634219 + MLT1J2 LTR MaLR 24 118 -332 1307 157 60 4 chr5 11451325 11451560 -191633972 - AluJb SINE Alu 0 312 65 225 333 13 0 chr5 11451663 11451738 -191633794 + MLT1J2 LTR MaLR 226 301 -149 2071 143 0 13 chr5 11451823 11452131 -191633401 + AluSq SINE Alu 1 304 -9 357 272 66 135 chr5 11453242 11453591 -191631941 - L3 LINE CR1 -808 769 445 481 173 70 177 chr5 11453765 11453905 -191631627 - MIR SINE MIR -27 235 129 1719 146 52 4 chr5 11453905 11454197 -191631335 + AluJb SINE Alu 1 305 0 481 173 70 177 chr5 11454197 11454298 -191631234 - MIR SINE MIR -133 129 19 2454 90 0 3 chr5 11454661 11454972 -191630560 - AluSp SINE Alu 0 313 4 1064 132 6 0 chr5 11455111 11455270 -191630262 - AluSc SINE Alu -4 305 146 565 274 0 0 chr5 11455465 11455618 -191629914 - MIR SINE MIR -16 246 94 5517 106 49 17 chr5 11456025 11456316 -191629216 + L1PA16 LINE L1 5106 5386 -780 2012 124 7 39 chr5 11456316 11456622 -191628910 + AluSx SINE Alu 1 296 -16 5517 106 49 17 chr5 11456622 11457353 -191628179 + L1PA16 LINE L1 5386 6157 -9 1924 132 35 0 chr5 11457503 11457791 -191627741 + AluSx SINE Alu 1 298 -14 210 37 0 0 chr5 11457791 11457818 -191627714 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 266 368 65 11 chr5 11458073 11458258 -191627274 - MIR SINE MIR -34 228 34 770 229 59 80 chr5 11458535 11458823 -191626709 + LTR1B LTR ERV1 545 826 0 1541 241 73 44 chr5 11458887 11459406 -191626126 - L1ME1 LINE L1 -14 6152 5619 2054 133 0 3 chr5 11459499 11459785 -191625747 - AluSx SINE Alu -15 297 13 759 181 12 41 chr5 11459795 11459966 -191625566 + L1MB5 LINE L1 6009 6174 0 1233 138 0 0 chr5 11460057 11460231 -191625301 - AluSq SINE Alu -10 303 130 440 143 14 0 chr5 11461823 11461893 -191623639 + AluSx SINE Alu 3 73 -239 6274 130 13 15 chr5 11461894 11462865 -191622667 + LTR5 LTR ERVK 1 969 0 1616 129 0 13 chr5 11462866 11463091 -191622441 + AluSx SINE Alu 71 292 -20 6130 137 49 56 chr5 11463617 11464637 -191620895 - Tigger3b DNA MER2_type -1798 1230 205 216 0 0 0 chr5 11464637 11464661 -191620871 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2062 108 7 0 chr5 11464663 11464941 -191620591 - AluSx SINE Alu -32 280 1 6130 137 49 56 chr5 11464941 11465155 -191620377 - Tigger3b DNA MER2_type -2824 204 1 1962 147 3 10 chr5 11465161 11465467 -191620065 - AluSx SINE Alu 0 312 9 684 245 88 80 chr5 11465474 11465685 -191619847 - L1ME4a LINE L1 -243 6673 6456 2499 54 3 0 chr5 11465685 11465981 -191619551 - AluY SINE Alu -14 297 1 684 245 88 80 chr5 11465981 11466145 -191619387 - L1ME4a LINE L1 -460 6456 6295 1087 127 0 24 chr5 11466219 11466385 -191619147 - AluSg/x SINE Alu -12 300 139 825 38 114 0 chr5 11466508 11466613 -191618919 + AluY SINE Alu 1 117 -194 286 130 19 56 chr5 11467917 11467971 -191617561 + MER69 DNA AcHobo 15 66 -2460 591 213 28 14 chr5 11468100 11468241 -191617291 + MER69 DNA AcHobo 2380 2522 -4 267 31 0 0 chr5 11468374 11468406 -191617126 + (TG)n Simple_repeat Simple_repeat 2 33 0 1446 179 6 80 chr5 11469779 11469911 -191615621 + AluJo SINE Alu 2 142 -170 2183 78 7 4 chr5 11469911 11470192 -191615340 + AluSc SINE Alu 1 282 -27 1446 179 6 80 chr5 11470192 11470371 -191615161 + AluJo SINE Alu 142 290 -22 1903 69 0 4 chr5 11470373 11470604 -191614928 + AluY SINE Alu 1 230 -81 1710 203 29 29 chr5 11470705 11471085 -191614447 - L1MDa LINE L1 -6158 382 3 777 282 97 24 chr5 11471953 11472365 -191613167 + LTR33 LTR ERVL 42 483 -38 2032 146 14 0 chr5 11472489 11472784 -191612748 + AluJo SINE Alu 1 299 -13 2064 83 6 51 chr5 11472812 11473115 -191612417 + AluSx SINE Alu 1 291 -21 278 26 26 0 chr5 11473115 11473154 -191612378 + (CA)n Simple_repeat Simple_repeat 2 41 0 2780 78 3 0 chr5 11474233 11474594 -191610938 + SVA Other Other 15 376 -1010 366 234 263 7 chr5 11474834 11474971 -191610561 - MIR SINE MIR -84 178 7 242 94 0 0 chr5 11474971 11475003 -191610529 + MLT1H LTR MaLR 12 43 -506 2498 235 50 54 chr5 11475393 11476424 -191609108 - L1ME4a LINE L1 -739 6220 5178 375 237 32 12 chr5 11476435 11476576 -191608956 - L1MCc LINE L1 -4887 1536 1410 273 0 0 96 chr5 11476926 11476978 -191608554 + (TTTCG)n Simple_repeat Simple_repeat 2 48 0 220 200 0 36 chr5 11477135 11477190 -191608342 + CT-rich Low_complexity Low_complexity 3 55 0 284 203 31 0 chr5 11477452 11477516 -191608016 - L1MCc LINE L1 -5938 993 928 4850 70 3 16 chr5 11477517 11478136 -191607396 - SVA Other Other -1 1385 775 353 86 0 71 chr5 11478236 11478306 -191607226 + AluY SINE Alu 238 302 0 288 0 0 0 chr5 11478405 11478437 -191607095 + (GA)n Simple_repeat Simple_repeat 1 32 0 2351 82 7 0 chr5 11479469 11479760 -191605772 + AluSp SINE Alu 1 293 -20 578 179 0 86 chr5 11479774 11479891 -191605641 + L1ME LINE L1 5477 5583 -583 1605 134 53 53 chr5 11479891 11480233 -191605299 + MER4A LTR ERV1 1 342 -322 2238 105 0 3 chr5 11480235 11480530 -191605002 + AluSg SINE Alu 1 294 -16 716 155 181 73 chr5 11480543 11480820 -191604712 + MER4C LTR ERV1 157 465 0 470 188 0 0 chr5 11480820 11480900 -191604632 + L1ME LINE L1 5580 5659 -507 531 298 66 40 chr5 11480971 11481273 -191604259 - L2 LINE L2 -444 2870 2561 2548 55 0 0 chr5 11481321 11481614 -191603918 - AluY SINE Alu -18 293 1 496 188 0 70 chr5 11481841 11481969 -191603563 - L1MC4 LINE L1 -11 8031 7913 219 203 0 0 chr5 11481969 11482033 -191603499 + CT-rich Low_complexity Low_complexity 1 64 0 14248 109 27 44 chr5 11482097 11482906 -191602626 - Tigger1 DNA MER2_type 0 2418 1597 2394 72 0 7 chr5 11482906 11483196 -191602336 - AluY SINE Alu -12 299 12 14248 109 27 44 chr5 11483196 11484655 -191600877 - Tigger1 DNA MER2_type -821 1597 188 399 296 164 0 chr5 11484988 11485177 -191600355 - MIR SINE MIR -15 247 28 2187 95 28 0 chr5 11486199 11486484 -191599048 + AluSc SINE Alu 1 293 -16 1458 160 0 89 chr5 11486582 11486920 -191598612 - AluJb SINE Alu -4 308 1 3599 195 21 75 chr5 11486971 11487886 -191597646 - L1ME1 LINE L1 -19 6147 5299 2261 89 3 0 chr5 11487886 11488209 -191597323 - AluY SINE Alu 0 324 1 3599 195 21 75 chr5 11488209 11488318 -191597214 - L1ME1 LINE L1 -867 5299 5186 2011 148 3 3 chr5 11488397 11488695 -191596837 - AluSx SINE Alu -14 298 1 2257 123 0 3 chr5 11488804 11489112 -191596420 + AluSg SINE Alu 1 307 -3 609 252 66 26 chr5 11489169 11489540 -191595992 + L1ME LINE L1 5254 5644 -477 192 241 93 0 chr5 11490846 11490900 -191594632 + MER5A DNA MER1_type 63 121 -68 1780 177 0 7 chr5 11491191 11491490 -191594042 - AluJo SINE Alu -15 297 1 209 33 33 0 chr5 11491501 11491531 -191594001 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 2330 34 9 96 chr5 11491541 11491863 -191593669 - AluY SINE Alu -17 294 1 1588 168 111 18 chr5 11492024 11492357 -191593175 + MLT1A1 LTR MaLR 1 364 -1 362 222 121 0 chr5 11492408 11492507 -191593025 - L2 LINE L2 -11 3302 3192 2242 111 0 7 chr5 11492578 11492876 -191592656 - AluSx SINE Alu -16 296 1 552 234 43 33 chr5 11492879 11493063 -191592469 - MIR SINE MIR -64 198 13 288 277 92 25 chr5 11493726 11493845 -191591687 + MIR SINE MIR 107 233 -29 342 218 97 1 chr5 11493949 11494040 -191591492 - MIR3 SINE MIR -51 157 59 182 167 0 0 chr5 11496132 11496162 -191589370 + L2 LINE L2 3261 3290 -23 2294 94 3 7 chr5 11496270 11496568 -191588964 - AluSx SINE Alu -15 297 1 431 219 73 0 chr5 11496898 11496994 -191588538 - MLT1I LTR MaLR 0 409 307 249 324 0 0 chr5 11497073 11497147 -191588385 - MLT1I LTR MaLR -254 155 82 2308 70 35 0 chr5 11497166 11497452 -191588080 + AluY SINE Alu 1 296 -15 724 50 350 0 chr5 11497453 11497573 -191587959 + AluSc SINE Alu 132 293 -16 1627 142 11 21 chr5 11498021 11498092 -191587440 - Tigger5 DNA MER2_type 0 2323 2253 2052 138 3 13 chr5 11498092 11498397 -191587135 - AluJb SINE Alu -10 302 1 1627 142 11 21 chr5 11498397 11498606 -191586926 - Tigger5 DNA MER2_type -70 2253 2046 376 304 14 10 chr5 11498896 11499067 -191586465 + A-rich Low_complexity Low_complexity 3 299 0 244 289 12 12 chr5 11499097 11499180 -191586352 + GA-rich Low_complexity Low_complexity 2 84 0 279 289 0 0 chr5 11499512 11499602 -191585930 + L1MC4 LINE L1 6614 6703 -1339 269 216 0 69 chr5 11499521 11499623 -191585909 - L1MC4 LINE L1 -1340 6702 6608 * 231 250 24 12 chr5 11500399 11500483 -191585049 + L1ME3 LINE L1 4757 4841 -1305 462 279 43 5 chr5 11500537 11500879 -191584653 + L1ME3 LINE L1 5071 5426 -738 258 32 0 0 chr5 11500928 11500959 -191584573 + (CAA)n Simple_repeat Simple_repeat 2 32 0 551 280 73 35 chr5 11500961 11501222 -191584310 + L1ME3 LINE L1 5560 5830 -332 2297 92 13 0 chr5 11501223 11501528 -191584004 + AluSg SINE Alu 1 309 -1 2127 85 41 30 chr5 11501595 11501890 -191583642 + AluY SINE Alu 1 298 -13 240 368 53 0 chr5 11501948 11502043 -191583489 - L2 LINE L2 -39 3233 3134 185 413 11 11 chr5 11502134 11502226 -191583306 - L2 LINE L2 -195 3077 2986 1504 77 39 14 chr5 11502290 11502498 -191583034 - AluSg/x SINE Alu -20 292 80 1812 151 0 37 chr5 11502955 11503253 -191582279 - AluJo SINE Alu -13 299 13 754 137 8 23 chr5 11503284 11503415 -191582117 - FLAM_A SINE Alu -1 132 4 1882 101 3 67 chr5 11503451 11503767 -191581765 + AluSp SINE Alu 1 296 -17 2293 78 0 3 chr5 11504538 11504831 -191580701 - AluY SINE Alu -19 292 1 891 237 9 26 chr5 11505145 11505373 -191580159 + MIR SINE MIR 8 231 -31 312 282 22 83 chr5 11505410 11505584 -191579948 - MER5A DNA MER1_type -12 166 1 942 269 119 66 chr5 11506513 11506944 -191578588 - MLT1L LTR MaLR -13 602 195 2312 110 0 0 chr5 11506944 11507243 -191578289 + AluSx SINE Alu 1 299 -13 942 269 119 66 chr5 11507243 11507334 -191578198 - MLT1L LTR MaLR -420 195 110 2078 115 21 0 chr5 11507334 11507621 -191577911 + AluSx SINE Alu 5 297 -15 942 269 119 66 chr5 11507621 11507669 -191577863 - MLT1L LTR MaLR -505 110 1 2236 54 14 4 chr5 11507774 11508052 -191577480 - AluY SINE Alu -30 281 1 259 341 11 21 chr5 11508994 11509112 -191576420 - MER5B DNA MER1_type -4 174 65 1461 217 45 12 chr5 11509174 11509511 -191576021 + MER7A DNA MER2_type 1 346 0 451 182 96 13 chr5 11510096 11510259 -191575273 - L1 LINE L1 -2326 3820 3650 6259 153 20 11 chr5 11510259 11511262 -191574270 - ERVL LTR ERVL -3179 2585 1574 677 245 23 54 chr5 11511267 11511533 -191573999 - MER4C LTR ERV1 -2 695 273 2238 102 0 0 chr5 11511554 11511837 -191573695 + AluSq SINE Alu 1 283 -30 515 328 123 26 chr5 11512541 11513086 -191572446 + L2 LINE L2 1404 2001 -1313 1945 139 10 26 chr5 11513095 11513405 -191572127 + AluJb SINE Alu 1 305 -7 1647 152 16 70 chr5 11513548 11513864 -191571668 - AluJb SINE Alu -7 305 7 432 328 38 21 chr5 11513867 11514105 -191571427 + L2 LINE L2 2306 2547 -767 1110 174 104 14 chr5 11514111 11514323 -191571209 - MER8 DNA MER2_type -1 238 8 2005 95 12 67 chr5 11514353 11514680 -191570852 - AluSx SINE Alu 0 312 4 853 111 14 14 chr5 11514692 11514836 -191570696 - AluYb8 SINE Alu 0 318 175 975 216 183 30 chr5 11515315 11515643 -191569889 + LTR33 LTR ERVL 1 378 -143 1839 153 24 20 chr5 11515715 11516010 -191569522 - AluJb SINE Alu -16 296 1 192 315 22 34 chr5 11516274 11516363 -191569169 - MIR SINE MIR -105 103 16 525 227 108 35 chr5 11516635 11516838 -191568694 + MIR SINE MIR 19 236 -26 2098 131 0 19 chr5 11516848 11517162 -191568370 + AluSx SINE Alu 1 308 -4 237 129 32 16 chr5 11518503 11518565 -191566967 + (CAT)n Simple_repeat Simple_repeat 1 63 0 236 269 73 91 chr5 11518568 11518691 -191566841 - MIR SINE MIR -12 250 131 2304 99 3 0 chr5 11518691 11518983 -191566549 + AluSp SINE Alu 2 294 -19 236 269 73 91 chr5 11518983 11519078 -191566454 - MIR SINE MIR -131 131 36 941 99 19 6 chr5 11519116 11519278 -191566254 + (TTTC)n Simple_repeat Simple_repeat 3 166 0 546 167 10 10 chr5 11519562 11519658 -191565874 + Tigger7 DNA MER2_type 2392 2487 0 545 252 132 6 chr5 11519658 11519815 -191565717 + MLT1J2 LTR MaLR 198 374 -76 2100 121 0 0 chr5 11519816 11520098 -191565434 - AluSx SINE Alu -17 295 14 2464 91 0 7 chr5 11521540 11521849 -191563683 - AluSg SINE Alu -3 307 1 2126 121 3 13 chr5 11522313 11522618 -191562914 - AluSq SINE Alu -5 308 7 519 106 0 0 chr5 11522748 11522814 -191562718 + U6 snRNA snRNA 41 106 -1 21 0 0 0 chr5 11522814 11522835 -191562697 + AT_rich Low_complexity Low_complexity 1 21 0 2065 123 3 0 chr5 11522896 11523217 -191562315 + AluSq SINE Alu 1 322 0 234 262 0 0 chr5 11524222 11524306 -191561226 + A-rich Low_complexity Low_complexity 1 84 0 7410 189 71 28 chr5 11524839 11526319 -191559213 - ERVL LTR ERVL -4168 1596 54 346 232 14 106 chr5 11526478 11526620 -191558912 - L2 LINE L2 -1 3312 3184 918 254 29 55 chr5 11526621 11526896 -191558636 - LTR16C LTR ERVL 0 491 224 294 106 0 0 chr5 11528303 11528350 -191557182 + (TG)n Simple_repeat Simple_repeat 1 47 0 23 86 0 0 chr5 11528997 11529055 -191556477 + AT_rich Low_complexity Low_complexity 1 58 0 345 82 0 0 chr5 11529364 11529413 -191556119 + (TG)n Simple_repeat Simple_repeat 1 49 0 603 272 55 32 chr5 11529913 11530130 -191555402 + MIR SINE MIR 20 241 -21 313 282 104 49 chr5 11530636 11530671 -191554861 - MER5B DNA MER1_type -3 175 143 2290 92 7 0 chr5 11530671 11530966 -191554566 + AluSc SINE Alu 1 297 -12 313 282 104 49 chr5 11530966 11531093 -191554439 - MER5B DNA MER1_type -35 143 4 238 259 15 118 chr5 11531094 11531229 -191554303 - MIR3 SINE MIR -46 162 42 347 273 23 30 chr5 11531464 11531596 -191553936 + MIR SINE MIR 52 182 -80 217 317 52 71 chr5 11532195 11532504 -191553028 + L2 LINE L2 2599 2901 -413 2420 53 0 26 chr5 11532528 11532832 -191552700 - AluY SINE Alu -15 296 1 2041 137 0 10 chr5 11533205 11533505 -191552027 - AluSx SINE Alu -13 299 3 2303 48 19 63 chr5 11534694 11535010 -191550522 + AluY SINE Alu 1 302 -9 2276 112 0 10 chr5 11535490 11535793 -191549739 - AluSx SINE Alu -12 300 1 2168 130 0 16 chr5 11535806 11536121 -191549411 - AluSx SINE Alu -2 310 1 328 208 111 0 chr5 11536601 11536673 -191548859 + MER58 DNA MER1_type 11 90 -125 2599 65 0 7 chr5 11536697 11537006 -191548526 + AluSp SINE Alu 1 307 -6 569 163 61 7 chr5 11537059 11537206 -191548326 + L1M4 LINE L1 5119 5273 -873 454 290 58 8 chr5 11537383 11537557 -191547975 + MIR SINE MIR 37 217 -45 475 123 123 12 chr5 11537822 11537903 -191547629 + 5S rRNA rRNA 1 90 -31 2189 99 20 3 chr5 11538089 11538381 -191547151 + AluSx SINE Alu 1 297 -15 406 274 60 0 chr5 11538401 11538518 -191547014 - L2 LINE L2 0 3313 3190 38 0 0 0 chr5 11538625 11538663 -191546869 + AT_rich Low_complexity Low_complexity 1 38 0 183 268 0 0 chr5 11539006 11539047 -191546485 + MIR SINE MIR 108 148 -60 1523 253 72 5 chr5 11539070 11539461 -191546071 - MLT1J2 LTR MaLR -18 432 16 198 311 14 0 chr5 11539472 11539546 -191545986 + MIR SINE MIR 152 226 -36 256 286 31 76 chr5 11539946 11540170 -191545362 + L2 LINE L2 2662 2875 -439 215 240 231 39 chr5 11540166 11540270 -191545262 - L2 LINE L2 0 3313 3190 * 355 317 44 28 chr5 11540408 11540588 -191544944 + L2 LINE L2 3120 3302 -11 225 65 0 0 chr5 11540588 11540619 -191544913 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 183 277 15 15 chr5 11542204 11542269 -191543263 - MER5A DNA MER1_type -7 182 118 2235 106 0 20 chr5 11542321 11542623 -191542909 - AluSg SINE Alu -14 296 1 850 204 74 6 chr5 11542928 11543090 -191542442 - MER21B LTR ERV1 -364 499 327 512 259 15 7 chr5 11543133 11543268 -191542264 - MER5B DNA MER1_type 0 178 43 835 250 37 14 chr5 11543270 11543486 -191542046 + AluJo SINE Alu 1 221 -91 268 98 0 59 chr5 11543486 11543537 -191541995 + FLAM_A SINE Alu 86 133 0 186 43 0 0 chr5 11543560 11543583 -191541949 + (CA)n Simple_repeat Simple_repeat 2 24 0 2018 149 0 0 chr5 11543603 11543892 -191541640 - AluSx SINE Alu -23 289 1 182 191 0 143 chr5 11543900 11543963 -191541569 + MER5B DNA MER1_type 124 177 -1 200 269 0 0 chr5 11544068 11544120 -191541412 - L2 LINE L2 0 3313 3262 1205 156 39 15 chr5 11544678 11544883 -191540649 - AluJo SINE Alu -102 210 1 2028 122 7 0 chr5 11545576 11545878 -191539654 - AluSx SINE Alu 0 308 5 222 37 0 0 chr5 11547117 11547144 -191538388 + (T)n Simple_repeat Simple_repeat 1 27 0 1501 123 0 14 chr5 11547239 11547458 -191538074 - AluSq SINE Alu -97 216 1 389 244 154 32 chr5 11547691 11547847 -191537685 - MIR SINE MIR -38 224 50 593 179 222 12 chr5 11547979 11548141 -191537391 - MIR SINE MIR 0 262 67 227 185 0 19 chr5 11548730 11548768 -191536764 + CT-rich Low_complexity Low_complexity 2 40 -14 2336 80 10 22 chr5 11548768 11549081 -191536451 - AluSp SINE Alu -4 309 1 227 185 0 19 chr5 11549081 11549096 -191536436 + CT-rich Low_complexity Low_complexity 40 54 0 1595 173 11 4 chr5 11549097 11549369 -191536163 - AluJo SINE Alu -38 274 1 1868 137 0 18 chr5 11549399 11549676 -191535856 + AluJo SINE Alu 11 282 -30 387 0 0 0 chr5 11549679 11549722 -191535810 + (CAA)n Simple_repeat Simple_repeat 2 44 0 273 179 30 45 chr5 11550148 11550215 -191535317 + L3 LINE CR1 1493 1558 -19 2334 71 0 3 chr5 11550791 11551099 -191534433 + AluY SINE Alu 1 307 0 1703 152 27 17 chr5 11551300 11551596 -191533936 + AluJo SINE Alu 2 300 -12 458 243 104 107 chr5 11551741 11552021 -191533511 - L1MC4 LINE L1 -17 8025 7648 1322 146 5 24 chr5 11552021 11552234 -191533298 + AluJb SINE Alu 85 293 -19 2255 107 17 0 chr5 11552267 11552566 -191532966 + AluJb SINE Alu 1 304 -8 1076 93 0 0 chr5 11552850 11552990 -191532542 - AluSp/q SINE Alu -2 311 172 2067 132 3 0 chr5 11553948 11554236 -191531296 - AluSx SINE Alu -23 289 1 21 36 0 0 chr5 11555670 11555698 -191529834 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr5 11556216 11556248 -191529284 + AT_rich Low_complexity Low_complexity 1 32 0 1590 162 40 7 chr5 11557862 11558134 -191527398 + AluJb SINE Alu 9 289 -23 1462 177 85 0 chr5 11558144 11558415 -191527117 + AluJo SINE Alu 1 294 -18 1951 102 60 11 chr5 11558421 11558704 -191526828 + AluSx SINE Alu 1 297 -15 27 51 0 17 chr5 11558707 11558726 -191526806 + AT_rich Low_complexity Low_complexity 1 19 -39 1736 149 73 3 chr5 11558726 11559015 -191526517 + AluSx SINE Alu 1 309 -3 27 51 0 17 chr5 11559015 11559054 -191526478 + AT_rich Low_complexity Low_complexity 19 58 0 203 302 47 0 chr5 11560824 11560930 -191524602 + (CATA)n Simple_repeat Simple_repeat 4 114 0 345 296 96 7 chr5 11560961 11561096 -191524436 - MIR SINE MIR -51 211 65 221 328 90 25 chr5 11561813 11561935 -191523597 - MIR SINE MIR -110 152 23 1040 150 0 72 chr5 11563512 11563705 -191521827 - AluJb SINE Alu -3 309 131 31 44 0 0 chr5 11563764 11563809 -191521723 + AT_rich Low_complexity Low_complexity 1 45 0 303 180 0 0 chr5 11563848 11563898 -191521634 - Alu SINE Alu -253 50 1 186 138 35 0 chr5 11565169 11565198 -191520334 + L2 LINE L2 3184 3213 -100 2423 102 30 24 chr5 11566079 11566452 -191519080 + THE1C LTR MaLR 1 375 0 2198 103 40 0 chr5 11568474 11568774 -191516758 + AluSx SINE Alu 1 312 0 242 287 101 23 chr5 11569307 11569436 -191516096 - L1ME LINE L1 -413 5740 5602 330 278 124 43 chr5 11569463 11569672 -191515860 + L1MC/D LINE L1 5316 5541 -2267 514 301 115 27 chr5 11570009 11570524 -191515008 - L1ME LINE L1 -1881 4248 3689 775 146 33 33 chr5 11570657 11570808 -191514724 + MLT1C LTR MaLR 1 151 -316 909 294 178 12 chr5 11570911 11571483 -191514049 + HAL1 LINE L1 114 780 -1727 2848 193 72 23 chr5 11571726 11572411 -191513121 + L1MB7 LINE L1 5459 6176 -8 549 264 80 41 chr5 11572415 11572979 -191512553 + HAL1 LINE L1 1091 1708 -799 450 295 8 76 chr5 11573311 11573548 -191511984 + MIR SINE MIR 27 247 -15 362 248 218 34 chr5 11573576 11573810 -191511722 + HAL1 LINE L1 2035 2311 -196 236 305 81 29 chr5 11574342 11574516 -191511016 - L1ME LINE L1 -4938 1181 999 443 366 41 53 chr5 11575909 11576321 -191509211 - L2 LINE L2 0 3272 2866 551 217 95 13 chr5 11576639 11576794 -191508738 - L1MD3 LINE L1 0 8040 7881 361 303 192 4 chr5 11576787 11577021 -191508511 - L1MC4 LINE L1 -191 7851 7574 * 414 207 36 45 chr5 11577054 11577099 -191508433 + MER20 DNA MER1_type 31 75 -144 2885 183 74 13 chr5 11577099 11577628 -191507904 - MER68 LTR ERV1 -1 561 1 414 207 36 45 chr5 11577628 11577693 -191507839 + MER20 DNA MER1_type 75 140 -79 1774 179 0 16 chr5 11578263 11578576 -191506956 + AluJo SINE Alu 3 310 -2 181 109 43 0 chr5 11578984 11579030 -191506502 + T-rich Low_complexity Low_complexity 3 50 0 835 254 96 35 chr5 11581500 11581976 -191503556 + MER110A LTR ERV1 1 486 0 1932 196 78 43 chr5 11582170 11582654 -191502878 + MLT1D LTR MaLR 2 502 -3 419 272 0 26 chr5 11582693 11582807 -191502725 + MIR SINE MIR 152 262 0 1939 166 103 70 chr5 11583336 11583782 -191501750 - MLT2C2 LTR ERVL 0 464 4 1752 185 0 3 chr5 11583915 11584223 -191501309 - AluJo SINE Alu -5 307 1 309 289 85 69 chr5 11586592 11586852 -191498680 - ERVL LTR ERVL -5148 616 353 703 164 15 52 chr5 11587156 11587316 -191498216 + L1MA7 LINE L1 5859 6016 -165 1435 126 18 22 chr5 11587316 11587536 -191497996 + L1PB4 LINE L1 5928 6149 -7 1308 178 36 14 chr5 11587536 11587807 -191497725 + L1MA7 LINE L1 6008 6288 -3 2357 97 3 0 chr5 11588671 11588969 -191496563 - AluSp SINE Alu -14 299 1 1003 169 0 0 chr5 11589019 11589167 -191496365 - AluJb SINE Alu -33 279 132 288 291 39 39 chr5 11589369 11589496 -191496036 + L2 LINE L2 3186 3312 -1 598 224 161 98 chr5 11589750 11590085 -191495447 + LTR18A LTR ERVL 1 356 -1 238 318 111 35 chr5 11590129 11590390 -191495142 + MLT1K LTR MaLR 99 379 -209 22 35 0 0 chr5 11590852 11590881 -191494651 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr5 11590924 11590947 -191494585 + (T)n Simple_repeat Simple_repeat 1 23 0 1093 211 126 38 chr5 11591112 11591182 -191494350 + MSTC LTR MaLR 10 72 -356 1928 149 3 31 chr5 11591182 11591504 -191494028 + AluSq SINE Alu 1 313 0 1093 211 126 38 chr5 11591504 11591750 -191493782 + MSTC LTR MaLR 72 354 -74 1422 222 19 134 chr5 11592090 11592639 -191492893 - L1ME1 LINE L1 -3 6163 5697 2084 142 3 0 chr5 11592639 11592935 -191492597 - AluSx SINE Alu -15 297 1 1422 222 19 134 chr5 11592935 11593028 -191492504 - L1ME1 LINE L1 -469 5697 5595 7158 75 8 4 chr5 11593028 11594943 -191490589 + L1PA8 LINE L1 4310 6163 -9 622 200 100 6 chr5 11594985 11595145 -191490387 + L1ME LINE L1 5406 5580 -586 277 350 77 0 chr5 11595159 11595342 -191490190 + L2 LINE L2 2550 2746 -568 2338 77 3 10 chr5 11595774 11596073 -191489459 - AluSg SINE Alu -13 297 1 696 226 83 0 chr5 11596771 11596939 -191488593 + MER58B DNA MER1_type 160 341 0 734 251 127 41 chr5 11596944 11597211 -191488321 - L2 LINE L2 -616 2698 2409 796 275 116 37 chr5 11597231 11597781 -191487751 + L2 LINE L2 2702 3309 -4 332 331 126 24 chr5 11597999 11598286 -191487246 + L2 LINE L2 2757 3069 -244 25 0 0 0 chr5 11599203 11599228 -191486304 + GC_rich Low_complexity Low_complexity 1 25 0 312 127 0 0 chr5 11599569 11599624 -191485908 + (CCCCG)n Simple_repeat Simple_repeat 5 59 0 497 245 126 0 chr5 11601607 11601758 -191483774 - MER58C DNA MER1_type 0 215 46 1379 140 26 0 chr5 11603990 11604218 -191481314 - MER50 LTR ERV1 -500 234 1 206 231 96 0 chr5 11604219 11604271 -191481261 + MIR3 SINE MIR 150 206 -2 462 18 0 0 chr5 11606297 11606352 -191479180 + (TG)n Simple_repeat Simple_repeat 2 56 0 1861 124 0 89 chr5 11607702 11608017 -191477515 + AluSx SINE Alu 26 312 0 2510 127 6 3 chr5 11608508 11608871 -191476661 + THE1B LTR MaLR 1 364 0 879 189 39 149 chr5 11609694 11610472 -191475060 + MER4C LTR ERV1 1 465 0 270 0 0 0 chr5 11611885 11611915 -191473617 + (CA)n Simple_repeat Simple_repeat 2 31 0 887 172 60 142 chr5 11613434 11613765 -191471767 + MLT1A1 LTR MaLR 20 323 -42 198 286 0 16 chr5 11614088 11614151 -191471381 + L2 LINE L2 2979 3040 -232 798 238 14 43 chr5 11614315 11614525 -191471007 + MER3 DNA MER1_type 6 209 0 390 321 42 31 chr5 11614927 11615120 -191470412 - L2 LINE L2 -497 2817 2623 2094 192 116 63 chr5 11617016 11617604 -191467928 + MLT1E3 LTR MaLR 1 619 -5 315 232 0 43 chr5 11618042 11618111 -191467421 - MER103 DNA DNA -78 88 23 183 129 0 0 chr5 11618165 11618196 -191467336 - MER5C DNA MER1_type -289 35 5 262 282 64 18 chr5 11618662 11618772 -191466760 + L1M4 LINE L1 4741 4855 -1291 293 239 95 23 chr5 11619056 11619308 -191466224 + L1M1 LINE L1 5192 5479 -701 471 237 8 8 chr5 11619714 11619832 -191465700 + LTR37B LTR ERV1 351 468 0 2394 76 0 3 chr5 11619939 11620243 -191465289 + AluY SINE Alu 1 303 -8 863 237 28 14 chr5 11620309 11620524 -191465008 + MER20 DNA MER1_type 1 218 -1 624 222 6 56 chr5 11622046 11622208 -191463324 - MER20 DNA MER1_type -6 213 60 981 253 177 59 chr5 11622626 11622892 -191462640 + MLT1E LTR MaLR 25 258 -335 2083 128 35 64 chr5 11622892 11623267 -191462265 + THE1B LTR MaLR 1 364 0 981 253 177 59 chr5 11623267 11623509 -191462023 + MLT1E LTR MaLR 258 593 0 1175 262 26 12 chr5 11623659 11624002 -191461530 + MER90 LTR ERV1 29 376 -199 2053 163 46 37 chr5 11624009 11624563 -191460969 - MLT2A2 LTR ERVL 0 554 1 458 266 35 74 chr5 11624564 11624767 -191460765 + MER90 LTR ERV1 420 614 0 440 292 9 0 chr5 11725823 11725936 -191359596 + MER81 DNA DNA 1 114 0 1024 277 140 69 chr5 11726620 11727481 -191358051 + HAL1 LINE L1 839 1596 -911 447 203 109 31 chr5 11728022 11728150 -191357382 + L2 LINE L2 3172 3309 -4 554 284 98 82 chr5 11728178 11728656 -191356876 + HAL1 LINE L1 2007 2492 -15 1569 193 3 23 chr5 11728766 11729071 -191356461 - AluJo SINE Alu -13 299 1 1096 307 98 46 chr5 11730421 11730606 -191354926 + L1MEc LINE L1 2115 2289 -3926 2076 119 7 0 chr5 11730606 11730900 -191354632 + AluSx SINE Alu 1 296 -16 1096 307 98 46 chr5 11730900 11731576 -191353956 + L1MEc LINE L1 2289 2977 -3238 302 263 12 25 chr5 11731989 11732069 -191353463 + L1MC4 LINE L1 6625 6703 -1339 * 316 194 0 56 chr5 11732052 11732124 -191353408 - L1MCa LINE L1 -4362 2064 1997 3076 165 29 8 chr5 11732143 11732731 -191352801 + L1MC1 LINE L1 5734 6333 0 1401 161 56 21 chr5 11733235 11733521 -191352011 - AluJb SINE Alu -16 296 1 541 250 12 54 chr5 11734044 11734100 -191351432 - MER45A DNA AcHobo -1420 161 104 2404 59 0 13 chr5 11734100 11734405 -191351127 + AluY SINE Alu 1 301 -10 541 250 12 54 chr5 11734405 11734516 -191351016 - MER45A DNA AcHobo -1477 104 1 206 288 119 8 chr5 11738203 11738321 -191347211 - L2 LINE L2 -2523 791 661 281 289 0 0 chr5 11738676 11738752 -191346780 - MIR SINE MIR -110 152 77 195 360 13 0 chr5 11738804 11738879 -191346653 - L2 LINE L2 -13 3300 3225 4012 161 18 60 chr5 11738889 11739708 -191345824 + LTR1 LTR ERV1 1 785 0 261 0 0 0 chr5 11740736 11740765 -191344767 + (CA)n Simple_repeat Simple_repeat 1 29 0 2561 174 47 19 chr5 11741031 11741559 -191343973 + MER67A LTR ERV1 1 543 0 630 183 215 5 chr5 11742447 11742607 -191342925 + LTR28 LTR ERV1 1 139 -286 312 197 14 0 chr5 11742618 11742689 -191342843 + LTR1 LTR ERV1 119 190 -595 * 3140 179 129 16 chr5 11742658 11743295 -191342237 + LTR28 LTR ERV1 308 1016 -4 206 178 22 0 chr5 11743330 11743375 -191342157 - MIR SINE MIR -70 138 93 293 204 0 107 chr5 11744292 11744395 -191341137 + HsTC2 DNA Tc2 5 96 -1802 1253 179 31 0 chr5 11744752 11745009 -191340523 + L1MB3 LINE L1 5919 6183 0 1800 101 12 0 chr5 11745012 11745270 -191340262 + AluSc SINE Alu 36 296 -13 1515 180 11 7 chr5 11745322 11745606 -191339926 + AluJb SINE Alu 1 285 -27 2845 121 27 16 chr5 11746892 11747340 -191338192 + MER4C LTR ERV1 5 457 -8 261 139 0 0 chr5 11747909 11747952 -191337580 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 683 273 6 27 chr5 11748215 11748398 -191337134 - MER5A DNA MER1_type -4 185 7 1442 273 83 53 chr5 11748507 11749112 -191336420 + MER21B LTR ERV1 189 811 -52 269 170 21 85 chr5 11749210 11749304 -191336228 + (CATTG)n Simple_repeat Simple_repeat 1 88 0 616 277 15 29 chr5 11750411 11750606 -191334926 - MER20B DNA MER1_type -17 202 7 314 293 61 24 chr5 11750700 11750968 -191334564 + L1 LINE L1 2888 3163 -2983 268 245 60 119 chr5 11751007 11751158 -191334374 + LTR33A LTR ERVL 21 162 -361 305 200 0 15 chr5 11751397 11751462 -191334070 + LTR33A LTR ERVL 442 505 -18 248 235 0 0 chr5 11751461 11751512 -191334020 + LTR33A LTR ERVL 473 523 0 * 32 26 0 0 chr5 11751625 11751664 -191333868 + AT_rich Low_complexity Low_complexity 1 39 0 320 281 63 37 chr5 11751904 11752210 -191333322 + L1 LINE L1 3687 3999 -2147 239 293 0 0 chr5 11752218 11752293 -191333239 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 28 29 0 0 chr5 11752349 11752384 -191333148 + AT_rich Low_complexity Low_complexity 1 35 0 674 113 0 10 chr5 11753150 11753247 -191332285 + MER4A LTR ERV1 1 96 -568 2715 107 12 12 chr5 11753248 11753650 -191331882 + MER4A LTR ERV1 263 664 0 2284 51 24 0 chr5 11754607 11754899 -191330633 + AluY SINE Alu 1 299 -12 645 161 0 8 chr5 11754900 11755018 -191330514 - MER5A DNA MER1_type -54 135 19 360 0 0 0 chr5 11756018 11756058 -191329474 + (CA)n Simple_repeat Simple_repeat 1 40 0 2149 207 153 56 chr5 11756512 11757359 -191328173 + LTR1B LTR ERV1 1 826 0 445 220 164 95 chr5 11757627 11757859 -191327673 + MLT2B1 LTR ERVL 265 512 -8 372 318 48 16 chr5 11759518 11759707 -191325825 + L3 LINE CR1 753 947 -630 180 111 0 0 chr5 11760230 11760257 -191325275 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 23 0 0 0 chr5 11763677 11763700 -191321832 + AT_rich Low_complexity Low_complexity 1 23 0 355 131 0 0 chr5 11765010 11765071 -191320461 - L1MA4 LINE L1 -5 6295 6235 198 339 0 0 chr5 11765711 11765776 -191319756 + MIR3 SINE MIR 144 208 0 197 162 0 27 chr5 11767741 11767778 -191317754 - L2 LINE L2 -10 3303 3268 707 227 54 125 chr5 11768198 11768550 -191316982 - MER46C DNA MER2_type -5 333 7 295 317 49 28 chr5 11768644 11768786 -191316746 - MIR3 SINE MIR -28 180 36 276 279 60 117 chr5 11769323 11769656 -191315876 + L2 LINE L2 2958 3271 -1 317 95 0 0 chr5 11770035 11770077 -191315455 + L2 LINE L2 3261 3302 -11 194 293 0 52 chr5 11770334 11770392 -191315140 - L3 LINE CR1 -123 1454 1400 2169 139 0 3 chr5 11771869 11772171 -191313361 - AluSc SINE Alu -8 301 1 4732 112 4 8 chr5 11772715 11773428 -191312104 + L1PA13 LINE L1 5452 6161 -2 2326 97 3 0 chr5 11773858 11774158 -191311374 + AluSx SINE Alu 1 301 -11 973 259 79 36 chr5 11776106 11776716 -191308816 - L1MC5 LINE L1 -36 7925 7290 451 281 6 11 chr5 11776850 11777028 -191308504 - L1MC5 LINE L1 -733 7228 7052 244 211 33 22 chr5 11777094 11777184 -191308348 - L1MC4 LINE L1 -1098 6944 6854 3796 77 10 27 chr5 11777194 11777428 -191308104 - LTR10C LTR ERV1 -37 596 360 2829 13 0 0 chr5 11777428 11777741 -191307791 - AluYb8 SINE Alu -5 313 1 3796 77 10 27 chr5 11777741 11778087 -191307445 - LTR10C LTR ERV1 -273 360 1 282 233 26 86 chr5 11778095 11778211 -191307321 - L1MC5 LINE L1 -1191 6770 6662 23 33 0 0 chr5 11778237 11778267 -191307265 + AT_rich Low_complexity Low_complexity 1 30 0 672 250 75 4 chr5 11778722 11778950 -191306582 - L1MC5 LINE L1 -1866 5942 5699 337 115 0 0 chr5 11778958 11779010 -191306522 - MADE1 DNA Mariner 0 80 29 315 0 0 0 chr5 11779209 11779244 -191306288 + (CA)n Simple_repeat Simple_repeat 2 36 0 214 290 105 9 chr5 11779521 11779753 -191305779 + MIR3 SINE MIR 4 256 -6 2388 111 6 6 chr5 11780216 11780566 -191304966 + THE1B LTR MaLR 3 352 -12 887 201 8 72 chr5 11780575 11780838 -191304694 + MER4A LTR ERV1 1 246 -418 525 253 28 75 chr5 11780863 11781131 -191304401 + MER4C LTR ERV1 208 290 -175 2095 114 3 13 chr5 11781131 11781430 -191304102 - AluSc SINE Alu -13 296 1 525 253 28 75 chr5 11781430 11781599 -191303933 + MER4C LTR ERV1 290 465 0 189 304 89 13 chr5 11781600 11781679 -191303853 + MIR SINE MIR 58 142 -66 2298 88 7 3 chr5 11782161 11782457 -191303075 + AluSg SINE Alu 1 297 -13 26 101 0 0 chr5 11782953 11783042 -191302490 + AT_rich Low_complexity Low_complexity 1 89 0 1813 156 21 15 chr5 11783091 11783419 -191302113 - L1PA16 LINE L1 0 6166 5837 33 73 0 0 chr5 11784165 11784233 -191301299 + AT_rich Low_complexity Low_complexity 1 68 0 410 65 16 0 chr5 11784390 11784452 -191301080 + (TCCA)n Simple_repeat Simple_repeat 2 64 0 214 267 58 33 chr5 11785979 11786099 -191299433 + MIR SINE MIR 118 240 -22 2447 73 3 0 chr5 11786290 11786591 -191298941 + AluY SINE Alu 1 302 -9 1636 191 36 25 chr5 11787256 11787592 -191297940 + L1MA4 LINE L1 5896 6238 -62 3168 201 27 60 chr5 11787592 11788446 -191297086 + LTR1B LTR ERV1 1 826 0 1636 191 36 25 chr5 11788446 11788502 -191297030 + L1MA4 LINE L1 6238 6292 -8 350 237 10 9 chr5 11789224 11789334 -191296198 + L1PB1 LINE L1 4985 5094 -1052 2793 19 27 0 chr5 11789335 11789701 -191295831 - L1P LINE L1 -944 5202 4827 * 3876 11 0 0 chr5 11789679 11790138 -191295394 + L1PA2 LINE L1 5693 6151 -4 3514 113 40 3 chr5 11790150 11790843 -191294689 + L1PB1 LINE L1 5083 5791 -360 308 202 32 75 chr5 11790856 11790950 -191294582 - L1MC4 LINE L1 -1339 6703 6614 190 130 0 43 chr5 11790953 11790999 -191294533 + (CATATA)n Simple_repeat Simple_repeat 6 49 0 2129 140 22 8 chr5 11791005 11791019 -191294513 + L1PB1 LINE L1 5782 5794 -357 194 88 0 29 chr5 11791019 11791053 -191294479 + (TA)n Simple_repeat Simple_repeat 2 34 0 2129 140 22 8 chr5 11791053 11791402 -191294130 + L1PB1 LINE L1 5794 6150 -1 282 216 41 21 chr5 11791528 11791625 -191293907 + (CATATA)n Simple_repeat Simple_repeat 1 99 0 1717 147 38 42 chr5 11792044 11792357 -191293175 + AluSx SINE Alu 1 312 0 260 332 39 19 chr5 11792560 11792768 -191292764 + L1ME3A LINE L1 114 325 -6071 212 128 21 21 chr5 11793189 11793236 -191292296 + (TATAA)n Simple_repeat Simple_repeat 2 48 0 3210 261 75 45 chr5 11793373 11794302 -191291230 + L1ME3A LINE L1 1624 2524 -3691 1806 63 14 5 chr5 11794302 11794558 -191290974 + AluY SINE Alu 60 317 0 3210 261 75 45 chr5 11794558 11796079 -191289453 + L1ME3A LINE L1 2524 4117 -2098 444 278 47 21 chr5 11796124 11796358 -191289174 + L1ME2 LINE L1 5924 6163 -1 5922 215 43 28 chr5 11798600 11799967 -191285565 + L1MC/D LINE L1 3524 4869 -1440 2193 124 0 16 chr5 11799967 11800282 -191285250 + AluSx SINE Alu 2 311 -1 5922 215 43 28 chr5 11800282 11800300 -191285232 + L1MC/D LINE L1 4869 4885 -1424 2771 7 0 0 chr5 11800300 11800603 -191284929 - AluYa5 SINE Alu -8 303 1 5922 215 43 28 chr5 11800603 11801219 -191284313 + L1MC/D LINE L1 4885 5566 -743 420 266 73 78 chr5 11801278 11801635 -191283897 + L1ME3A LINE L1 4999 5353 -862 1031 263 163 48 chr5 11801673 11802427 -191283105 + L1ME3A LINE L1 5391 6231 -8 307 269 74 28 chr5 11802504 11802612 -191282920 - MIR3 SINE MIR -8 200 88 24 0 0 0 chr5 11804355 11804379 -191281153 + AT_rich Low_complexity Low_complexity 1 24 0 485 167 9 26 chr5 11805092 11805206 -191280326 + L1MA10 LINE L1 6223 6334 0 37 39 0 0 chr5 11805353 11805404 -191280128 + AT_rich Low_complexity Low_complexity 1 51 0 420 226 189 6 chr5 11805553 11805717 -191279815 + MLT1J2 LTR MaLR 190 383 -67 332 124 22 45 chr5 11806004 11806093 -191279439 + GA-rich Low_complexity Low_complexity 2 88 0 180 0 0 0 chr5 11806620 11806640 -191278892 + (GA)n Simple_repeat Simple_repeat 1 20 0 407 310 44 44 chr5 11806958 11807116 -191278416 + MER5A DNA MER1_type 30 187 -2 207 340 30 0 chr5 11808053 11808153 -191277379 - MIR SINE MIR -1 261 159 219 279 38 56 chr5 11808740 11808910 -191276622 - MER5B DNA MER1_type -7 182 2 203 333 93 47 chr5 11809198 11809327 -191276205 + L2 LINE L2 3137 3271 -1 528 268 39 15 chr5 11809787 11809950 -191275582 + MIR SINE MIR 3 167 -58 2077 106 0 45 chr5 11810490 11810802 -191274730 - AluSg1 SINE Alu -11 298 1 227 267 0 0 chr5 11812387 11812432 -191273100 + (CTA)n Simple_repeat Simple_repeat 2 46 0 2001 139 10 3 chr5 11812630 11812925 -191272607 - AluJb SINE Alu -15 297 1 225 0 0 0 chr5 11813583 11813608 -191271924 + (CA)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr5 11813725 11813754 -191271778 + AT_rich Low_complexity Low_complexity 1 29 0 1205 197 9 0 chr5 11814548 11814771 -191270761 + AluJb SINE Alu 86 310 -2 2321 216 70 4 chr5 11815457 11815984 -191269548 - MER68 LTR ERV1 0 562 1 248 326 167 8 chr5 11818079 11818211 -191267321 - MIR3 SINE MIR -46 162 10 21 36 0 0 chr5 11820054 11820082 -191265450 + AT_rich Low_complexity Low_complexity 1 28 0 306 0 0 0 chr5 11820411 11820445 -191265087 + (CA)n Simple_repeat Simple_repeat 2 35 0 186 333 63 56 chr5 11821727 11821853 -191263679 - MIR SINE MIR -122 140 14 209 220 0 20 chr5 11822947 11822997 -191262535 + (CA)n Simple_repeat Simple_repeat 2 50 0 221 301 14 14 chr5 11823676 11823749 -191261783 - L2 LINE L2 -1 3271 3199 280 405 7 0 chr5 11825891 11826039 -191259493 - MIR SINE MIR -109 153 5 345 279 78 23 chr5 11827469 11827646 -191257886 + MIR SINE MIR 4 187 -73 7421 164 36 13 chr5 11830636 11831914 -191253618 + L1M1 LINE L1 14 1320 -6245 * 11028 151 29 23 chr5 11831913 11832995 -191252537 + L1M1 LINE L1 2252 3325 -4240 2317 65 0 0 chr5 11832995 11833272 -191252260 + AluY SINE Alu 22 298 -13 11028 151 29 23 chr5 11833272 11835791 -191249741 + L1M1 LINE L1 3325 5887 -1678 2921 129 50 58 chr5 11835771 11836069 -191249463 + L1M1 LINE L1 6453 6752 -972 * 2212 113 7 0 chr5 11836069 11836378 -191249154 + AluSp SINE Alu 1 311 -2 2921 129 50 58 chr5 11836378 11836812 -191248720 + L1M1 LINE L1 6752 7197 -527 233 174 0 29 chr5 11837965 11838034 -191247498 + (TATAA)n Simple_repeat Simple_repeat 1 67 0 342 113 68 0 chr5 11838039 11838172 -191247360 + (TA)n Simple_repeat Simple_repeat 1 142 0 35 0 0 0 chr5 11838172 11838207 -191247325 + AT_rich Low_complexity Low_complexity 1 35 0 297 0 0 0 chr5 11838361 11838394 -191247138 + (TAA)n Simple_repeat Simple_repeat 2 34 0 473 196 0 59 chr5 11838738 11838840 -191246692 - MER3 DNA MER1_type -1 208 113 458 191 159 48 chr5 11838845 11838971 -191246561 - MER3 DNA MER1_type -26 183 44 533 319 14 93 chr5 11839454 11839871 -191245661 - L2 LINE L2 -1 3312 2929 414 85 0 0 chr5 11840444 11840503 -191245029 + (TG)n Simple_repeat Simple_repeat 1 59 0 551 261 84 51 chr5 11841348 11841659 -191243873 + L1MD2 LINE L1 5702 6022 -337 * 1340 234 75 7 chr5 11841388 11841802 -191243730 + L1MB8 LINE L1 5737 6178 0 2148 82 0 0 chr5 11841814 11842081 -191243451 + AluY SINE Alu 44 310 -1 334 64 21 0 chr5 11843381 11843428 -191242104 - THE1C LTR MaLR -322 53 6 442 81 0 27 chr5 11843955 11844029 -191241503 + (TCTCC)n Simple_repeat Simple_repeat 2 73 0 284 304 71 76 chr5 11844345 11844569 -191240963 + MIR SINE MIR 37 259 -3 300 303 97 0 chr5 11847258 11847403 -191238129 - MIR SINE MIR -6 256 98 249 221 0 0 chr5 11848366 11848434 -191237098 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 331 273 16 50 chr5 11848682 11848803 -191236729 - L2 LINE L2 -238 3034 2918 28 29 0 0 chr5 11849485 11849520 -191236012 + AT_rich Low_complexity Low_complexity 1 35 0 388 216 41 10 chr5 11850376 11850473 -191235059 - L2 LINE L2 0 3313 3214 361 301 103 10 chr5 11850525 11850728 -191234804 + LTR50 LTR ERVL 19 240 -555 694 231 231 0 chr5 11851111 11851375 -191234157 + LTR50 LTR ERVL 471 795 0 450 227 82 0 chr5 11851887 11851997 -191233535 + LTR50 LTR ERVL 9 127 -668 292 304 40 40 chr5 11852047 11852172 -191233360 + MIR3 SINE MIR 30 154 -54 193 0 0 0 chr5 11853756 11853780 -191231752 + MIR SINE MIR 129 152 -110 2152 313 23 37 chr5 11853837 11854674 -191230858 + L1M4b LINE L1 11 835 -6024 1845 186 65 35 chr5 11854675 11855012 -191230520 + L1MA9 LINE L1 5833 6158 -154 483 18 0 0 chr5 11855012 11855068 -191230464 + (CA)n Simple_repeat Simple_repeat 1 56 0 1845 186 65 35 chr5 11855068 11855123 -191230409 + L1MA9 LINE L1 6158 6210 -102 222 37 0 0 chr5 11855123 11855150 -191230382 + (TG)n Simple_repeat Simple_repeat 2 28 0 1845 186 65 35 chr5 11855150 11855185 -191230347 + L1MA9 LINE L1 6210 6274 -38 744 226 111 9 chr5 11855196 11855209 -191230323 + L1M4b LINE L1 1546 1556 -5299 2027 135 0 10 chr5 11855209 11855546 -191229986 + AluSg SINE Alu 1 310 0 744 226 111 9 chr5 11855546 11855819 -191229713 + L1M4b LINE L1 1556 1855 -5000 416 185 6 92 chr5 11855860 11855970 -191229562 + L1M4b LINE L1 2087 2205 -4753 2144 169 45 85 chr5 11855970 11856462 -191229070 + MER70A LTR ERVL 1 472 0 416 185 6 92 chr5 11856462 11856486 -191229046 + L1M4b LINE L1 2205 2609 -4349 * 3053 177 80 49 chr5 11856481 11857222 -191228310 + L1MB7 LINE L1 5421 6184 0 1302 245 40 0 chr5 11861187 11861514 -191224018 + MER63B DNA MER1_type 1 340 -96 315 260 173 36 chr5 11862057 11862334 -191223198 + L1ME LINE L1 5522 5836 -285 7409 59 10 0 chr5 11862611 11863661 -191221871 - L1PA7 LINE L1 -3 6151 5096 2205 114 3 18 chr5 11863663 11863995 -191221537 - L1PA7 LINE L1 -1127 5019 4693 324 307 203 63 chr5 11866113 11866478 -191219054 - L1M2 LINE L1 -5908 941 526 323 298 13 25 chr5 11866479 11866637 -191218895 + G-rich Low_complexity Low_complexity 2 157 0 3946 149 99 45 chr5 11867422 11867780 -191217752 - pTR5 LTR ERV1 0 2606 2269 2909 0 0 0 chr5 11867780 11868087 -191217445 + AluYa5 SINE Alu 1 307 -4 3946 149 99 45 chr5 11868087 11869145 -191216387 - pTR5 LTR ERV1 -337 2269 1524 281 276 69 41 chr5 11870216 11870381 -191215151 - Charlie8 DNA MER1_type -2153 264 104 839 198 135 21 chr5 11870551 11870743 -191214789 + MER58A DNA MER1_type 4 217 -7 183 100 0 0 chr5 11870843 11870873 -191214659 + (TAAAAA)n Simple_repeat Simple_repeat 5 34 0 34 72 0 0 chr5 11872144 11872213 -191213319 + AT_rich Low_complexity Low_complexity 1 69 0 991 286 95 24 chr5 11872422 11872929 -191212603 - MLT1H LTR MaLR 0 549 7 512 209 0 0 chr5 11873306 11873411 -191212121 + MLT1B LTR MaLR 31 135 -255 269 292 49 49 chr5 11873930 11874074 -191211458 - MER5B DNA MER1_type -18 160 17 831 158 8 0 chr5 11874934 11875054 -191210478 - FLAM_C SINE Alu -21 122 2 2215 89 4 0 chr5 11875949 11876259 -191209273 + AluSp SINE Alu 1 311 0 622 232 33 7 chr5 11876374 11876525 -191209007 - MER69A DNA AcHobo -1 176 22 252 0 0 0 chr5 11876525 11876553 -191208979 + (TG)n Simple_repeat Simple_repeat 1 28 0 2228 134 132 5 chr5 11877541 11877921 -191207611 - MSTA LTR MaLR 0 428 1 376 285 72 80 chr5 11878214 11878640 -191206892 - L1 LINE L1 -1359 4787 4357 601 221 58 96 chr5 11878690 11878898 -191206634 + MIR SINE MIR 21 220 -42 24 0 0 0 chr5 11878960 11878984 -191206548 + AT_rich Low_complexity Low_complexity 1 24 0 356 326 86 29 chr5 11879068 11879381 -191206151 - L1 LINE L1 -1908 4238 3908 21 36 0 0 chr5 11879657 11879685 -191205847 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr5 11879731 11879759 -191205773 + AT_rich Low_complexity Low_complexity 1 28 0 1755 190 54 2 chr5 11879805 11880229 -191205303 + LTR53 LTR ERVL 1 519 0 810 143 45 184 chr5 11880477 11880700 -191204832 - 7SK RNA RNA -1 192 1 25 31 0 0 chr5 11881008 11881040 -191204492 + AT_rich Low_complexity Low_complexity 1 32 0 1590 210 7 3 chr5 11881145 11881445 -191204087 - AluJo SINE Alu -11 301 1 354 351 71 37 chr5 11882192 11882514 -191203018 - HAL1b LINE L1 -784 564 232 29 0 5 0 chr5 11883126 11883183 -191202349 + AT_rich Low_complexity Low_complexity 1 29 0 461 240 16 32 chr5 11883247 11883372 -191202160 + MIR SINE MIR 118 240 -22 35 63 0 0 chr5 11883391 11883454 -191202078 + AT_rich Low_complexity Low_complexity 1 63 0 253 301 24 0 chr5 11884751 11884834 -191200698 + L2 LINE L2 3227 3311 -2 261 0 0 0 chr5 11885219 11885248 -191200284 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 565 330 48 21 chr5 11885757 11886090 -191199442 + L1M2 LINE L1 11 352 -6497 11108 238 20 34 chr5 11886848 11889476 -191196056 + L1PA12 LINE L1 2231 4960 -2624 1988 134 108 15 chr5 11889476 11889819 -191195713 + THE1C LTR MaLR 1 375 0 11108 238 20 34 chr5 11889819 11890921 -191194611 + L1PA12 LINE L1 4960 6076 -1508 13000 150 18 25 chr5 11890929 11893170 -191192362 + L1P LINE L1 11 2237 -3909 6058 166 4 10 chr5 11893170 11894366 -191191166 + L1MA4 LINE L1 5105 6294 -6 2370 205 8 149 chr5 11895441 11895523 -191190009 - MLT2B3 LTR ERVL 0 515 423 677 86 0 17 chr5 11895523 11895639 -191189893 + (TAGA)n Simple_repeat Simple_repeat 1 114 0 2370 205 8 149 chr5 11895639 11896141 -191189391 - MLT2B3 LTR ERVL -92 423 13 279 203 0 0 chr5 11896668 11896727 -191188805 + (CA)n Simple_repeat Simple_repeat 1 59 0 22 103 0 0 chr5 11897577 11897655 -191187877 + AT_rich Low_complexity Low_complexity 1 78 0 320 308 65 54 chr5 11897744 11898098 -191187434 + L1MEd LINE L1 846 1203 -4916 748 202 75 144 chr5 11898124 11898715 -191186817 - LTR34 LTR ERV1 -4 695 135 464 160 57 19 chr5 11898788 11898894 -191186638 - MER4C LTR ERV1 -353 112 3 1413 192 63 63 chr5 11898952 11899332 -191186200 - MSTD LTR MaLR -2 394 15 218 189 0 0 chr5 11901202 11901239 -191184293 + CT-rich Low_complexity Low_complexity 2 38 0 201 273 105 70 chr5 11901296 11901468 -191184064 + MIR SINE MIR 30 207 -55 2553 222 21 9 chr5 11901876 11902408 -191183124 - MER74A LTR ERVL -18 540 3 384 304 71 30 chr5 11904387 11904555 -191180977 + MIR SINE MIR 68 242 -20 279 79 0 0 chr5 11904568 11904606 -191180926 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 631 218 15 0 chr5 11905783 11905916 -191179616 + L1MA10 LINE L1 4685 4819 -1327 * 3488 204 7 59 chr5 11905912 11906779 -191178753 + L1MA10 LINE L1 5512 6333 -1 1655 187 126 6 chr5 11907796 11908122 -191177410 + MLT1A1 LTR MaLR 1 365 0 259 160 32 96 chr5 11908654 11908748 -191176784 - Looper DNA T2_type -97 1461 1374 644 175 10 0 chr5 11908796 11908893 -191176639 + MER2 DNA MER2_type 1 98 -247 1011 251 105 19 chr5 11908893 11909208 -191176324 - MER2 DNA MER2_type 0 345 4 652 235 39 59 chr5 11909209 11909328 -191176204 + MER2 DNA MER2_type 95 215 -130 2168 124 0 0 chr5 11909328 11909627 -191175905 - AluSx SINE Alu -13 299 1 652 235 39 59 chr5 11909627 11909762 -191175770 + MER2 DNA MER2_type 215 344 -1 203 315 41 0 chr5 11910013 11910086 -191175446 - MER91 DNA MER1_type 0 140 65 319 246 37 59 chr5 11910191 11910378 -191175154 - L1MEd LINE L1 -4891 1228 1046 1164 205 43 26 chr5 11910597 11910899 -191174633 - L1MC3 LINE L1 0 7785 7479 2271 114 0 0 chr5 11911154 11911452 -191174080 - AluSx SINE Alu -14 298 1 21 0 0 0 chr5 11911461 11911482 -191174050 + AT_rich Low_complexity Low_complexity 1 21 0 1870 125 39 11 chr5 11911501 11911782 -191173750 - AluSx SINE Alu -13 299 11 2031 157 80 27 chr5 11911932 11912308 -191173224 + MSTD LTR MaLR 1 396 0 22 35 0 0 chr5 11912457 11912486 -191173046 + AT_rich Low_complexity Low_complexity 1 29 0 715 285 191 19 chr5 11912648 11913066 -191172466 + LTR16C LTR ERVL 2 491 0 262 305 69 30 chr5 11913157 11913288 -191172244 - MIR3 SINE MIR -66 142 7 6920 82 6 6 chr5 11914919 11915818 -191169714 + HERVL-A2 LTR ERVL 4756 5654 0 2209 160 36 31 chr5 11915818 11916366 -191169166 + MLT2A2 LTR ERVL 1 554 0 217 191 0 43 chr5 11917021 11917068 -191168464 + GA-rich Low_complexity Low_complexity 4 48 0 225 0 0 0 chr5 11917332 11917357 -191168175 + (TG)n Simple_repeat Simple_repeat 2 26 0 2001 230 91 48 chr5 11917357 11917965 -191167567 - MER21B LTR ERV1 -86 777 144 355 279 23 0 chr5 11918080 11918166 -191167366 - MER21B LTR ERV1 -764 99 12 208 211 58 19 chr5 11918572 11918624 -191166908 + MIR SINE MIR 99 153 -55 1977 181 68 32 chr5 11918654 11919097 -191166435 - LTR2B LTR ERV1 0 490 32 1251 244 54 21 chr5 11919616 11919948 -191165584 - LTR48B LTR ERV1 -4 640 298 4203 169 80 38 chr5 11919949 11920923 -191164609 - LTR48B-int LTR ERV1 -508 5823 4809 375 152 0 15 chr5 11920921 11920987 -191164545 - LTR48B-int LTR ERV1 -4475 1856 1792 * 258 159 23 0 chr5 11921076 11921120 -191164412 - LTR48B-int LTR ERV1 -4699 1632 1588 299 247 11 22 chr5 11921673 11921762 -191163770 - LTR48B-int LTR ERV1 -4954 1377 1290 4766 195 53 86 chr5 11921813 11923145 -191162387 - LTR48B-int LTR ERV1 -5042 1289 1 2668 171 79 53 chr5 11923147 11923236 -191162296 - LTR48B LTR ERV1 0 644 559 2949 84 19 11 chr5 11923236 11923607 -191161925 - THE1C LTR MaLR 0 375 2 2668 171 79 53 chr5 11923607 11923916 -191161616 - LTR48B LTR ERV1 -85 559 222 2433 83 0 3 chr5 11923916 11924228 -191161304 + AluY SINE Alu 1 311 0 2668 171 79 53 chr5 11924228 11924435 -191161097 - LTR48B LTR ERV1 -422 222 22 704 270 89 31 chr5 11924601 11924860 -191160672 + MLT1J LTR MaLR 39 312 -199 201 133 0 0 chr5 11926037 11926067 -191159465 + (GA)n Simple_repeat Simple_repeat 1 30 0 1366 131 66 0 chr5 11926099 11926297 -191159235 - AluJb SINE Alu -16 296 86 26 0 0 0 chr5 11926301 11926327 -191159205 + AT_rich Low_complexity Low_complexity 1 26 0 388 231 92 75 chr5 11926872 11926916 -191158616 - MIR SINE MIR -64 198 156 3342 159 35 0 chr5 11926916 11927451 -191158081 + MER41C LTR ERV1 1 554 0 388 231 92 75 chr5 11927451 11927579 -191157953 - MIR SINE MIR -106 156 23 5367 139 33 20 chr5 11928788 11929670 -191155862 + MER4D LTR ERV1 3 895 -8 660 111 0 0 chr5 11929965 11930064 -191155468 + (TA)n Simple_repeat Simple_repeat 1 99 0 2929 81 103 5 chr5 11930065 11930473 -191155059 + LTR7 LTR ERV1 1 448 -2 208 256 0 0 chr5 11930474 11930517 -191155015 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 329 161 11 75 chr5 11930674 11930767 -191154765 + L1MB4 LINE L1 6093 6179 -1 1040 153 38 169 chr5 11930948 11931220 -191154312 + L1MD3 LINE L1 7547 7759 -236 2236 75 0 0 chr5 11931220 11931498 -191154034 + AluY SINE Alu 26 303 -8 1040 153 38 169 chr5 11931498 11931597 -191153935 + L1MD3 LINE L1 7759 7869 -126 913 223 98 53 chr5 11931616 11932183 -191153349 - LTR48 LTR ERV1 -4 783 1 575 224 2 3 chr5 11932183 11932306 -191153226 + L1MD3 LINE L1 6240 6359 0 250 265 34 6 chr5 11932469 11932556 -191152976 + MIR SINE MIR 58 146 -62 1376 214 28 64 chr5 11932556 11932817 -191152715 - MLT1A2 LTR MaLR 0 374 130 1912 120 223 11 chr5 11932817 11933167 -191152365 - MSTA LTR MaLR -4 424 1 1376 214 28 64 chr5 11933167 11933293 -191152239 - MLT1A2 LTR MaLR -244 130 1 2261 164 46 21 chr5 11934229 11934746 -191150786 + MLT2A2 LTR ERVL 1 554 0 180 125 0 0 chr5 11937782 11937814 -191147718 + (TG)n Simple_repeat Simple_repeat 1 32 0 664 223 13 25 chr5 11937841 11937998 -191147534 - Tigger2 DNA MER2_type -16 2702 2548 * 866 173 46 20 chr5 11937974 11938171 -191147361 - Tigger2 DNA MER2_type -2509 209 8 885 150 44 12 chr5 11938441 11938601 -191146931 - L1MC2 LINE L1 -13 6331 6167 23 0 0 0 chr5 11939900 11939923 -191145609 + AT_rich Low_complexity Low_complexity 1 23 0 384 262 10 0 chr5 11939945 11940048 -191145484 + MER5B DNA MER1_type 1 104 -74 205 79 53 79 chr5 11940138 11940176 -191145356 - MER5A DNA MER1_type -152 37 1 602 195 109 35 chr5 11940197 11940371 -191145161 + MER5A DNA MER1_type 1 187 -2 2099 134 3 0 chr5 11941548 11941855 -191143677 - AluSx SINE Alu -4 308 1 305 196 0 0 chr5 11943379 11943435 -191142097 + L1MC4 LINE L1 6648 6703 -1339 22 0 0 0 chr5 11943874 11943896 -191141636 + AT_rich Low_complexity Low_complexity 1 22 0 1687 41 0 0 chr5 11945177 11945371 -191140161 + L1PA5 LINE L1 5957 6150 -4 24 32 0 0 chr5 11945417 11945448 -191140084 + AT_rich Low_complexity Low_complexity 1 31 0 358 235 99 0 chr5 11945688 11945769 -191139763 - MER117 DNA MER1_type -107 90 2 925 181 0 6 chr5 11945991 11946151 -191139381 - AluSg/x SINE Alu -38 272 114 636 174 36 36 chr5 11946262 11946400 -191139132 - AluSg/x SINE Alu -81 229 92 1695 244 17 3 chr5 11948365 11948725 -191136807 - MLT1A1 LTR MaLR 0 365 1 284 179 30 0 chr5 11949193 11949260 -191136272 + CT-rich Low_complexity Low_complexity 3 71 0 203 346 31 43 chr5 11949643 11949805 -191135727 - L2 LINE L2 -466 2848 2689 407 306 40 30 chr5 11949841 11950040 -191135492 - L1M4 LINE L1 -1104 5042 4842 292 166 5 242 chr5 11950275 11950486 -191135046 + MLT1H LTR MaLR 279 439 -110 1836 237 60 38 chr5 11951111 11951714 -191133818 - L1MC4 LINE L1 -248 7794 7179 589 304 116 42 chr5 11951745 11952203 -191133329 - LTR67 LTR ERVL -5 552 61 197 200 36 0 chr5 11952263 11952318 -191133214 + T-rich Low_complexity Low_complexity 5 61 0 262 291 0 38 chr5 11953795 11953874 -191131658 + CT-rich Low_complexity Low_complexity 2 77 0 440 346 33 22 chr5 11954134 11954351 -191131181 + MIR SINE MIR 3 226 -36 25 51 0 0 chr5 11955671 11955710 -191129822 + AT_rich Low_complexity Low_complexity 1 39 0 2184 108 0 3 chr5 11957132 11957427 -191128105 + AluSx SINE Alu 1 294 -18 1137 210 30 63 chr5 11957520 11957795 -191127737 + MER33 DNA MER1_type 3 267 -2318 2226 80 3 13 chr5 11957795 11958095 -191127437 - AluSp SINE Alu -16 297 1 1137 210 30 63 chr5 11958095 11958152 -191127380 + MER33 DNA MER1_type 267 324 0 186 226 83 60 chr5 11958356 11958440 -191127092 - MIR SINE MIR -140 122 37 194 279 0 0 chr5 11961491 11961534 -191123998 - MIR SINE MIR -109 153 111 189 74 0 0 chr5 11961590 11961617 -191123915 + (AAATG)n Simple_repeat Simple_repeat 4 30 0 201 196 0 0 chr5 11961933 11961979 -191123553 + (TA)n Simple_repeat Simple_repeat 2 47 0 5406 110 16 21 chr5 11962454 11963282 -191122250 + L1PA13 LINE L1 5333 6162 -1 263 136 0 0 chr5 11963323 11963367 -191122165 - L1MA9 LINE L1 -35 6277 6234 445 152 15 38 chr5 11963438 11963570 -191121962 + CT-rich Low_complexity Low_complexity 2 130 0 401 206 10 0 chr5 11963673 11963770 -191121762 + CT-rich Low_complexity Low_complexity 3 100 0 358 197 0 0 chr5 11963770 11963836 -191121696 - L1MA8 LINE L1 -130 6161 6096 2211 304 140 22 chr5 11965452 11966949 -191118583 + L2 LINE L2 1382 3107 -206 2656 111 3 11 chr5 11966949 11967327 -191118205 + THE1C LTR MaLR 1 375 0 2211 304 140 22 chr5 11967327 11967552 -191117980 + L2 LINE L2 3107 3304 -9 351 200 16 96 chr5 11967613 11967738 -191117794 - MIR SINE MIR -138 124 10 192 314 35 47 chr5 11967757 11967778 -191117754 - L2 LINE L2 -54 3218 3198 1925 193 85 9 chr5 11967778 11968203 -191117329 - MSTB2 LTR MaLR 0 457 1 192 314 35 47 chr5 11968203 11968267 -191117265 - L2 LINE L2 -74 3198 3134 1592 243 49 27 chr5 11968502 11968991 -191116541 - MLT1D LTR MaLR 0 505 6 208 174 0 22 chr5 11969302 11969348 -191116184 + T-rich Low_complexity Low_complexity 3 47 0 2319 57 0 0 chr5 11970068 11970401 -191115131 - AluY SINE Alu 0 333 1 2290 107 0 0 chr5 11970471 11970771 -191114761 - AluY SINE Alu -11 300 1 215 284 210 33 chr5 11970794 11971037 -191114495 - L2 LINE L2 -527 2787 2502 26 93 0 0 chr5 11971706 11971781 -191113751 + AT_rich Low_complexity Low_complexity 1 75 0 1616 179 14 0 chr5 11972212 11972526 -191113006 - AluJb SINE Alu 0 318 1 1108 278 65 15 chr5 11973839 11974242 -191111290 + LTR16A LTR ERVL 25 447 -3 1832 132 30 40 chr5 11974984 11975356 -191110176 - THE1C LTR MaLR 0 375 8 5712 198 14 50 chr5 11975888 11975905 -191109627 - L1P3 LINE L1 -4290 2171 2155 14056 128 7 6 chr5 11975905 11979000 -191106532 - L1PA8A LINE L1 -6 6125 3030 5712 198 14 50 chr5 11979000 11980878 -191104654 - L1P3 LINE L1 -4306 2155 259 685 198 16 101 chr5 11981112 11981360 -191104172 + LTR12 LTR ERV1 238 464 -250 1517 104 3 97 chr5 11981389 11981677 -191103855 - L1P3 LINE L1 -5613 262 2 189 215 62 62 chr5 11982434 11982499 -191103033 - MIR SINE MIR -88 174 110 715 215 34 10 chr5 11982825 11983030 -191102502 - MLT1C LTR MaLR -251 216 7 22 35 0 0 chr5 11983945 11983974 -191101558 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr5 11984424 11984445 -191101087 + AT_rich Low_complexity Low_complexity 1 21 0 2052 147 3 3 chr5 11985611 11985911 -191099621 + AluJb SINE Alu 4 303 -9 13156 128 8 3 chr5 11986103 11988996 -191096536 + L1PA8A LINE L1 3229 6125 -6 1885 131 24 40 chr5 11989611 11989985 -191095547 + THE1C LTR MaLR 8 375 0 1108 278 65 15 chr5 11990727 11991130 -191094402 - LTR16A LTR ERVL -3 447 25 1603 179 14 0 chr5 11992443 11992769 -191092763 + AluJb SINE Alu 1 330 0 26 93 0 0 chr5 11993200 11993275 -191092257 + AT_rich Low_complexity Low_complexity 1 75 0 212 282 212 33 chr5 11993945 11994186 -191091346 + L2 LINE L2 2502 2785 -529 2281 107 0 0 chr5 11994211 11994510 -191091022 + AluY SINE Alu 1 299 -12 2320 57 0 0 chr5 11994580 11994933 -191090599 + AluY SINE Alu 1 353 0 208 174 0 22 chr5 11995653 11995699 -191089833 + A-rich Low_complexity Low_complexity 3 47 0 1631 226 26 94 chr5 11996034 11996497 -191089035 - L1M4 LINE L1 -934 5448 5050 306 87 0 0 chr5 11996497 11996543 -191088989 + (TA)n Simple_repeat Simple_repeat 2 47 0 1631 226 26 94 chr5 11996543 11996801 -191088731 - L1M4 LINE L1 -1332 5050 4776 4790 161 48 25 chr5 11996810 11997920 -191087612 - L1MA7 LINE L1 0 6291 5158 229 218 0 0 chr5 11997980 11998035 -191087497 - L1M4 LINE L1 -3921 2463 2409 417 272 159 46 chr5 11998037 11998320 -191087212 - L1M4 LINE L1 -786 5360 5046 1915 144 57 28 chr5 11998326 11998680 -191086852 - THE1B LTR MaLR 0 364 1 10030 106 24 35 chr5 11998680 11999776 -191085756 - THE1B-int LTR MaLR 0 1580 505 2555 82 14 6 chr5 11999776 12000129 -191085403 - L1PA8A LINE L1 0 6131 5776 10030 106 24 35 chr5 12000129 12000628 -191084904 - THE1B-int LTR MaLR -1075 505 2 1747 171 39 15 chr5 12000629 12000963 -191084569 - THE1B LTR MaLR 0 364 23 5672 61 16 0 chr5 12000966 12001899 -191083633 - L1PA7 LINE L1 -115 6039 5092 2111 192 17 28 chr5 12001897 12002821 -191082711 + L1PA7 LINE L1 3757 5115 -1031 * 1026 243 117 23 chr5 12002828 12003196 -191082336 - MSTD LTR MaLR 0 396 1 4192 208 32 23 chr5 12003199 12004649 -191080883 + L1MA10 LINE L1 4438 5874 -460 2026 174 13 16 chr5 12004649 12005023 -191080509 + THE1C LTR MaLR 3 375 0 9436 125 12 73 chr5 12005028 12006709 -191078823 + THE1C-int LTR MaLR 1 1580 0 2270 140 11 21 chr5 12006709 12007088 -191078444 + THE1C LTR MaLR 1 375 0 4192 208 32 23 chr5 12007088 12007501 -191078031 + L1MA10 LINE L1 5876 6332 -2 315 223 19 19 chr5 12007494 12007597 -191077935 - L1M4 LINE L1 -1239 4907 4805 * 323 109 0 0 chr5 12007762 12007817 -191077715 - L1MA3 LINE L1 -1 6304 6250 617 269 90 54 chr5 12007834 12008448 -191077084 - L1MEc LINE L1 -4934 1462 827 2171 149 68 13 chr5 12008470 12008866 -191076666 + MSTB LTR MaLR 9 426 0 565 310 125 48 chr5 12009591 12010261 -191075271 + L2 LINE L2 2567 3283 -30 229 203 29 14 chr5 12011257 12011326 -191074206 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 1451 140 0 0 chr5 12012151 12012365 -191073167 - AluSg/x SINE Alu -15 297 84 1360 110 24 89 chr5 12012994 12013240 -191072292 + MER30 DNA MER1_type 1 230 0 744 226 92 36 chr5 12013537 12013958 -191071574 + MLT1D LTR MaLR 21 501 -4 327 203 0 0 chr5 12014287 12014356 -191071176 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 22 0 0 0 chr5 12015932 12015954 -191069578 + AT_rich Low_complexity Low_complexity 1 22 0 2247 105 0 25 chr5 12016435 12016749 -191068783 + AluSg SINE Alu 1 306 -4 324 294 81 48 chr5 12017251 12017647 -191067885 - L2 LINE L2 -174 3139 2734 307 319 93 30 chr5 12018354 12018624 -191066908 - L3 LINE CR1 -428 1149 863 2283 95 10 0 chr5 12019303 12019607 -191065925 - AluSp SINE Alu -6 307 1 3232 233 41 10 chr5 12021423 12022222 -191063310 + L1MB7 LINE L1 5352 6175 -9 428 0 19 0 chr5 12023029 12023081 -191062451 + (TG)n Simple_repeat Simple_repeat 2 54 0 221 309 37 0 chr5 12023787 12023868 -191061664 + L3 LINE CR1 1492 1575 -2 1416 230 69 34 chr5 12023942 12024384 -191061148 + MER31B LTR ERV1 3 657 -4 1047 213 58 5 chr5 12024384 12024537 -191060995 + MER20 DNA MER1_type 2 170 -49 234 62 0 0 chr5 12024537 12024569 -191060963 + (CA)n Simple_repeat Simple_repeat 1 32 0 1047 213 58 5 chr5 12024569 12024622 -191060910 + MER20 DNA MER1_type 170 219 0 358 252 106 31 chr5 12024798 12025059 -191060473 - MLT1J2 LTR MaLR -10 436 152 310 271 115 78 chr5 12026063 12026332 -191059200 - MLT1J2 LTR MaLR -65 385 107 1634 149 112 6 chr5 12026367 12026689 -191058843 - LTR18B LTR ERVL 0 614 259 1381 101 11 0 chr5 12026909 12027098 -191058434 - LTR18B LTR ERVL -423 191 1 270 292 42 0 chr5 12027098 12027189 -191058343 - MLT1J1 LTR MaLR -343 103 9 989 257 159 0 chr5 12029008 12029265 -191056267 - MER77 LTR ERV1 0 605 308 1064 232 62 77 chr5 12029383 12029719 -191055813 - MER77 LTR ERV1 -253 352 22 207 0 0 0 chr5 12030277 12030300 -191055232 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1762 158 36 4 chr5 12030572 12030851 -191054681 + AluJo SINE Alu 6 293 -19 1091 213 126 60 chr5 12031734 12031773 -191053759 - MLT2B1 LTR ERVL -1 413 378 255 61 0 0 chr5 12031773 12031806 -191053726 + (TG)n Simple_repeat Simple_repeat 1 33 0 1091 213 126 60 chr5 12031806 12032195 -191053337 - MLT2B1 LTR ERVL -36 378 1 264 312 8 48 chr5 12032977 12033102 -191052430 - L2 LINE L2 -13 3300 3181 528 265 139 0 chr5 12034677 12034843 -191050689 - MER5A DNA MER1_type 0 189 1 21 36 0 0 chr5 12035068 12035096 -191050436 + AT_rich Low_complexity Low_complexity 1 28 0 765 300 76 103 chr5 12036318 12036990 -191048542 + L3 LINE CR1 36 684 -893 5617 147 14 3 chr5 12036990 12038211 -191047321 + L1PA15 LINE L1 4933 6161 -4 765 300 76 103 chr5 12038211 12038351 -191047181 + L3 LINE CR1 684 826 -751 2408 161 48 22 chr5 12038414 12038831 -191046701 - MSTA LTR MaLR 0 428 1 332 285 46 39 chr5 12039166 12039296 -191046236 + L3 LINE CR1 1426 1556 -21 282 29 0 0 chr5 12039352 12039387 -191046145 + (CA)n Simple_repeat Simple_repeat 1 35 0 2273 101 0 3 chr5 12041390 12041688 -191043844 - AluSq SINE Alu -16 297 1 409 283 6 17 chr5 12042967 12043147 -191042385 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 205 309 14 7 chr5 12043166 12043305 -191042227 + (TATATG)n Simple_repeat Simple_repeat 3 142 0 414 293 17 0 chr5 12043395 12043569 -191041963 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 200 213 0 0 chr5 12043635 12043682 -191041850 + (TATATG)n Simple_repeat Simple_repeat 3 49 0 210 333 7 20 chr5 12043756 12043906 -191041626 + (CATATA)n Simple_repeat Simple_repeat 3 150 0 275 29 0 0 chr5 12045071 12045106 -191040426 + L1PA6 LINE L1 6111 6145 -9 1983 145 0 23 chr5 12045138 12045442 -191040090 - AluSx SINE Alu -15 297 1 191 310 17 0 chr5 12045681 12045739 -191039793 + L2 LINE L2 3214 3272 0 1491 139 31 5 chr5 12046453 12046676 -191038856 + MER30 DNA MER1_type 2 230 0 180 273 0 0 chr5 12047431 12047497 -191038035 + CT-rich Low_complexity Low_complexity 4 69 0 199 361 48 30 chr5 12047825 12047991 -191037541 - L2 LINE L2 -428 2886 2718 246 326 181 7 chr5 12047993 12048131 -191037401 + L2 LINE L2 3152 3313 0 332 351 89 0 chr5 12048857 12049025 -191036507 + MIR SINE MIR 8 190 -72 208 315 126 16 chr5 12049510 12049637 -191035895 - MIR SINE MIR -59 203 63 339 285 164 15 chr5 12050570 12050744 -191034788 + MIR SINE MIR 45 241 -21 2117 104 0 44 chr5 12050899 12051217 -191034315 - AluSx SINE Alu -8 304 1 9362 238 84 22 chr5 12051336 12056141 -191029391 - L1MC3 LINE L1 -14 7771 2638 2144 139 7 3 chr5 12056141 12056451 -191029081 + AluSx SINE Alu 1 311 -1 9362 238 84 22 chr5 12056451 12056672 -191028860 - L1MC3 LINE L1 -5147 2638 2432 1282 260 100 91 chr5 12056705 12057085 -191028447 + MLT1E2 LTR MaLR 1 392 -234 1009 203 124 95 chr5 12057085 12057538 -191027994 + MER31B LTR ERV1 1 466 0 1282 260 100 91 chr5 12057538 12057665 -191027867 + MLT1E2 LTR MaLR 392 516 -110 213 39 0 0 chr5 12059952 12059978 -191025554 + (TG)n Simple_repeat Simple_repeat 2 27 0 507 173 9 27 chr5 12060956 12061066 -191024466 + MER67D LTR ERV1 1 108 -406 344 188 25 12 chr5 12061101 12061181 -191024351 + MER67D LTR ERV1 430 510 -4 2299 154 35 31 chr5 12061609 12062158 -191023374 + MLT2A2 LTR ERVL 1 554 0 225 0 0 0 chr5 12063058 12063083 -191022449 + (TC)n Simple_repeat Simple_repeat 2 26 0 1793 147 6 35 chr5 12063838 12064150 -191021382 + AluJb SINE Alu 1 303 -9 26 30 0 0 chr5 12064215 12064248 -191021284 + AT_rich Low_complexity Low_complexity 1 33 0 2198 110 0 26 chr5 12064540 12064849 -191020683 - AluSq SINE Alu -12 301 1 445 228 33 0 chr5 12066136 12066228 -191019304 - MLT1B LTR MaLR -32 358 264 1246 208 82 38 chr5 12066232 12066598 -191018934 + MLT1B LTR MaLR 6 387 -3 2492 67 0 3 chr5 12067386 12067686 -191017846 + AluY SINE Alu 1 299 -12 183 80 0 0 chr5 12070755 12070780 -191014752 + (A)n Simple_repeat Simple_repeat 1 25 0 240 227 18 118 chr5 12071119 12071229 -191014303 - MIR SINE MIR -7 255 157 800 114 0 64 chr5 12071231 12071371 -191014161 - AluSg/x SINE Alu -1 309 179 180 0 0 0 chr5 12071371 12071391 -191014141 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 227 323 43 0 chr5 12071399 12071492 -191014040 - MIR SINE MIR -110 152 56 297 287 33 47 chr5 12071761 12071911 -191013621 + MIR SINE MIR 91 238 -24 1217 241 177 9 chr5 12073458 12073922 -191011610 + MER74A LTR ERVL 1 542 -16 1519 126 13 4 chr5 12074406 12074644 -191010888 + L1MA2 LINE L1 6065 6304 0 201 39 0 0 chr5 12075598 12075624 -191009908 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2502 76 0 0 chr5 12076502 12076803 -191008729 + AluSc SINE Alu 1 301 -8 2145 126 0 3 chr5 12077123 12077424 -191008108 + AluSx SINE Alu 1 300 -12 744 273 10 10 chr5 12077521 12077730 -191007802 - LTR40a LTR ERVL -303 216 8 1475 178 7 40 chr5 12081323 12081626 -191003906 - L1MA7 LINE L1 -410 5881 5589 1903 180 35 20 chr5 12081626 12082023 -191003509 + L1MA7 LINE L1 5883 6288 -3 745 145 26 0 chr5 12082044 12082161 -191003371 + FRAM SINE Alu 37 156 -20 3168 198 20 37 chr5 12082810 12083055 -191002477 - L1MA9 LINE L1 -35 6277 6030 2335 99 0 0 chr5 12083055 12083348 -191002184 - AluSg1 SINE Alu -16 293 1 3168 198 20 37 chr5 12083348 12083839 -191001693 - L1MA9 LINE L1 -282 6030 5553 2857 195 90 12 chr5 12083835 12084180 -191001352 + L1M2 LINE L1 4589 4906 -1398 * 189 0 0 0 chr5 12084180 12084201 -191001331 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2857 195 90 12 chr5 12084201 12084772 -191000760 + L1M2 LINE L1 4906 5561 -743 27 0 0 0 chr5 12084874 12084901 -191000631 + AT_rich Low_complexity Low_complexity 1 27 0 280 301 19 0 chr5 12085039 12085142 -191000390 - L1ME3A LINE L1 -227 5943 5839 240 207 81 23 chr5 12085298 12085385 -191000147 + L1MC4 LINE L1 6612 6703 -1339 238 102 0 41 chr5 12085396 12085445 -191000087 + (TA)n Simple_repeat Simple_repeat 2 48 0 776 230 95 24 chr5 12085602 12085971 -190999561 - L1MC5 LINE L1 -225 7736 7342 245 206 24 40 chr5 12085976 12086017 -190999515 + (CATATA)n Simple_repeat Simple_repeat 6 46 -83 2075 148 52 56 chr5 12086017 12086464 -190999068 + MER65A LTR ERV1 1 445 0 245 206 24 40 chr5 12086464 12086548 -190998984 + (CATATA)n Simple_repeat Simple_repeat 46 129 0 1963 193 32 17 chr5 12086765 12087175 -190998357 + MLT2C2 LTR ERVL 1 416 -48 243 164 0 0 chr5 12087191 12087252 -190998280 + (CA)n Simple_repeat Simple_repeat 2 62 0 195 42 0 0 chr5 12087286 12087310 -190998222 + (TA)n Simple_repeat Simple_repeat 2 25 0 273 208 0 62 chr5 12087327 12087423 -190998109 + L1MC4 LINE L1 6614 6703 -1339 180 0 0 0 chr5 12087427 12087447 -190998085 + (GA)n Simple_repeat Simple_repeat 2 21 0 245 139 93 0 chr5 12087465 12087508 -190998024 + MLT2C2 LTR ERVL 472 518 -2 255 299 17 26 chr5 12088687 12088804 -190996728 + MIR SINE MIR 97 212 -50 1147 207 29 0 chr5 12088886 12089094 -190996438 + MER20 DNA MER1_type 6 219 0 8619 48 0 0 chr5 12091310 12092279 -190993253 - LTR5 LTR ERVK 0 969 1 1702 198 91 82 chr5 12092866 12093381 -190992151 - MLT2B1 LTR ERVL 0 520 1 929 245 54 51 chr5 12093915 12094246 -190991286 - MLT1E LTR MaLR -199 394 63 373 66 33 0 chr5 12094920 12094981 -190990551 + (TG)n Simple_repeat Simple_repeat 2 64 0 1713 226 6 43 chr5 12096387 12096801 -190988731 - L1ME1 LINE L1 -168 6067 5672 2178 82 43 0 chr5 12096801 12097080 -190988452 - AluY SINE Alu -5 306 16 1713 226 6 43 chr5 12097080 12097148 -190988384 - L1ME1 LINE L1 -563 5672 5603 1032 274 84 37 chr5 12097156 12097754 -190987778 - L1ME1 LINE L1 -2054 4161 3536 875 150 4 177 chr5 12098027 12098269 -190987263 + MER51C LTR ERV1 446 640 0 421 287 15 7 chr5 12098272 12098408 -190987124 - L1ME1 LINE L1 -2681 3534 3398 3902 185 62 6 chr5 12098412 12099218 -190986314 - L1MB2 LINE L1 -5 6166 5316 3328 262 56 30 chr5 12099210 12101960 -190983572 - L1ME1 LINE L1 -2797 3418 639 * 458 277 196 5 chr5 12101967 12102151 -190983381 + MER20 DNA MER1_type 1 219 0 1402 297 41 17 chr5 12102154 12102743 -190982789 - L1ME1 LINE L1 -5760 636 34 27 62 0 0 chr5 12103015 12103063 -190982469 + AT_rich Low_complexity Low_complexity 1 48 0 597 140 13 33 chr5 12104363 12104513 -190981019 + CT-rich Low_complexity Low_complexity 2 148 0 22 0 0 0 chr5 12105230 12105252 -190980280 + AT_rich Low_complexity Low_complexity 1 22 0 2290 131 41 16 chr5 12105558 12105924 -190979608 + THE1C LTR MaLR 1 375 0 7963 159 40 33 chr5 12105924 12107494 -190978038 + THE1C-int LTR MaLR 1 1580 0 2214 138 42 8 chr5 12107496 12107857 -190977675 + THE1C LTR MaLR 3 375 0 1131 225 14 0 chr5 12108117 12108339 -190977193 + AluJb SINE Alu 5 229 -83 1110 238 47 0 chr5 12109367 12109644 -190975888 - MER58B DNA MER1_type -6 335 46 395 303 117 7 chr5 12111810 12112091 -190973441 + MLT1J2 LTR MaLR 18 329 -121 277 300 0 0 chr5 12113080 12113160 -190972372 + (TG)n Simple_repeat Simple_repeat 2 81 0 1647 110 44 0 chr5 12114082 12114309 -190971223 - AluSg/x SINE Alu -4 306 70 644 211 172 16 chr5 12115922 12116178 -190969354 - MER69 DNA AcHobo -94 2432 2137 995 271 83 95 chr5 12116248 12116583 -190968949 - MER69B DNA AcHobo -1609 917 580 244 150 0 67 chr5 12116583 12116643 -190968889 + LTR66 LTR ERVL 384 439 -171 333 68 0 0 chr5 12116643 12116687 -190968845 + (TG)n Simple_repeat Simple_repeat 2 45 0 995 271 83 95 chr5 12116687 12116698 -190968834 - MER69B DNA AcHobo -1945 581 571 2242 109 0 10 chr5 12116698 12117001 -190968531 - AluSq SINE Alu -13 300 1 995 271 83 95 chr5 12117001 12117406 -190968126 - MER69B DNA AcHobo -1955 571 72 2479 67 0 7 chr5 12117889 12118189 -190967343 - AluY SINE Alu -13 298 1 2225 121 0 13 chr5 12118196 12118511 -190967021 - AluSq SINE Alu -1 312 2 22 0 0 0 chr5 12118687 12118709 -190966823 + AT_rich Low_complexity Low_complexity 1 22 0 223 249 73 0 chr5 12120044 12120136 -190965396 + MER5A DNA MER1_type 63 152 -26 261 0 0 0 chr5 12120208 12120237 -190965295 + (A)n Simple_repeat Simple_repeat 1 29 0 378 245 23 35 chr5 12121092 12121233 -190964299 + MIR SINE MIR 45 184 -63 2212 167 53 17 chr5 12121294 12121678 -190963854 - MSTA LTR MaLR 0 428 27 2955 63 115 5 chr5 12121678 12122037 -190963495 + MLT2A1 LTR ERVL 2 411 -33 905 90 0 8 chr5 12122037 12122171 -190963361 + (TCTA)n Simple_repeat Simple_repeat 3 135 0 2955 63 115 5 chr5 12122171 12122210 -190963322 + MLT2A1 LTR ERVL 411 444 0 2212 167 53 17 chr5 12122210 12122238 -190963294 - MSTA LTR MaLR -401 27 1 37743 93 13 7 chr5 12123514 12129668 -190955864 + L1PA6 LINE L1 11 6154 0 35 24 0 0 chr5 12129910 12129952 -190955580 + AT_rich Low_complexity Low_complexity 1 42 0 312 27 0 0 chr5 12130247 12130284 -190955248 + (TG)n Simple_repeat Simple_repeat 2 38 0 246 193 0 0 chr5 12130921 12130978 -190954554 + (CA)n Simple_repeat Simple_repeat 2 58 0 1520 257 38 16 chr5 12134676 12135127 -190950405 - LTR53 LTR ERVL -7 512 52 547 270 37 18 chr5 12135667 12135830 -190949702 + MIR SINE MIR 60 225 -37 775 267 115 33 chr5 12135871 12136298 -190949234 + MLT1C LTR MaLR 1 462 -5 191 214 0 71 chr5 12136400 12136456 -190949076 - L2 LINE L2 -5 3267 3216 229 189 0 0 chr5 12137410 12137447 -190948085 + MER81 DNA DNA 1 37 -77 238 301 0 0 chr5 12140384 12140457 -190945075 - MIR SINE MIR -129 133 61 2469 146 34 2 chr5 12141460 12141871 -190943661 + MSTA LTR MaLR 1 424 -4 650 242 159 5 chr5 12142119 12142533 -190942999 + MLT1G1 LTR MaLR 30 541 -49 1386 207 34 14 chr5 12143130 12143425 -190942107 + AluJb SINE Alu 1 301 -1 696 276 148 6 chr5 12145922 12146259 -190939273 - L1MC4 LINE L1 -151 7891 7507 2080 140 21 32 chr5 12146364 12146743 -190938789 - THE1C LTR MaLR 0 375 1 1527 196 145 0 chr5 12148224 12148576 -190936956 - MER57A LTR ERV1 0 403 1 320 44 0 0 chr5 12148614 12148659 -190936873 + AluSp/q SINE Alu 255 299 -4 519 219 0 47 chr5 12150558 12150686 -190934846 + MLT1A1 LTR MaLR 1 122 -243 1234 202 34 15 chr5 12151004 12151266 -190934266 + MLT1A1 LTR MaLR 99 365 0 5405 130 13 7 chr5 12151585 12152563 -190932969 - L1PA14 LINE L1 -66 6095 5112 1801 140 184 11 chr5 12152729 12153094 -190932438 + MSTA LTR MaLR 1 428 0 993 114 0 0 chr5 12153116 12153256 -190932276 + MSTA-int LTR MaLR 59 198 -1382 238 269 0 0 chr5 12153256 12153308 -190932224 + (TG)n Simple_repeat Simple_repeat 2 53 0 2488 159 33 28 chr5 12153608 12154067 -190931465 - MLT1C LTR MaLR -1 466 6 326 89 78 0 chr5 12154189 12154279 -190931253 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 2356 106 0 6 chr5 12155560 12155872 -190929660 - AluSp SINE Alu -2 311 2 249 287 53 0 chr5 12156546 12156640 -190928892 + MIR SINE MIR 132 230 -32 21 95 0 0 chr5 12157359 12157422 -190928110 + AT_rich Low_complexity Low_complexity 1 63 0 240 291 57 70 chr5 12157436 12157543 -190927989 - L1P LINE L1 -2364 3782 3676 288 0 0 0 chr5 12157543 12157575 -190927957 + (TG)n Simple_repeat Simple_repeat 2 33 0 240 291 57 70 chr5 12157575 12157625 -190927907 - L1P LINE L1 -2470 3676 3627 22 0 0 0 chr5 12161132 12161154 -190924378 + AT_rich Low_complexity Low_complexity 1 22 0 874 268 27 27 chr5 12162736 12163035 -190922497 + L1MD2 LINE L1 4398 4696 -1450 * 2760 240 67 62 chr5 12163030 12163972 -190921560 + L1MD2 LINE L1 5056 6042 -317 1806 158 45 24 chr5 12163972 12164302 -190921230 + MER1B DNA MER1_type 1 337 0 2760 240 67 62 chr5 12164302 12164612 -190920920 + L1MD2 LINE L1 6042 6349 -10 392 254 46 23 chr5 12164764 12164894 -190920638 + HAL1b LINE L1 681 813 -535 5020 224 44 12 chr5 12165059 12165995 -190919537 - L1 LINE L1 -951 5195 4290 258 105 0 0 chr5 12165995 12166033 -190919499 + (TG)n Simple_repeat Simple_repeat 1 38 0 5020 224 44 12 chr5 12166033 12166113 -190919419 - L1 LINE L1 -1856 4290 4214 258 32 0 0 chr5 12166113 12166144 -190919388 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5020 224 44 12 chr5 12166144 12166499 -190919033 - L1 LINE L1 -1932 4214 3779 2365 189 37 18 chr5 12166501 12167120 -190918412 + L1MA9 LINE L1 5207 5840 -472 2049 161 9 0 chr5 12167270 12167618 -190917914 + L1PA16 LINE L1 5811 6161 -5 387 145 0 0 chr5 12167899 12167968 -190917564 + (CAT)n Simple_repeat Simple_repeat 2 70 0 180 286 202 0 chr5 12168485 12168604 -190916928 + L2 LINE L2 3102 3244 -69 2147 116 7 7 chr5 12170316 12170619 -190914913 - AluSx SINE Alu -8 304 2 328 224 152 8 chr5 12170899 12171024 -190914508 + Charlie7 DNA MER1_type 49 191 -2421 508 237 16 37 chr5 12171324 12171514 -190914018 + Charlie7 DNA MER1_type 581 766 -1846 1540 271 73 54 chr5 12172019 12173131 -190912401 + Charlie7 DNA MER1_type 1312 2444 -168 21 0 0 0 chr5 12173426 12173447 -190912085 + AT_rich Low_complexity Low_complexity 1 21 0 221 226 15 73 chr5 12173976 12174113 -190911419 + T-rich Low_complexity Low_complexity 2 130 0 216 0 0 0 chr5 12175161 12175185 -190910347 + (TG)n Simple_repeat Simple_repeat 1 24 0 375 243 43 64 chr5 12175244 12175384 -190910148 - MIR SINE MIR -109 153 17 790 163 7 14 chr5 12176199 12176340 -190909192 - FLAM_A SINE Alu -2 140 1 2010 112 0 0 chr5 12176788 12177074 -190908458 + AluSq SINE Alu 26 311 0 2135 217 84 42 chr5 12177074 12177982 -190907550 - L1MEc LINE L1 -2939 3276 2331 256 274 126 0 chr5 12178008 12178198 -190907334 - L1MEc LINE L1 -4094 2302 2089 1221 112 96 0 chr5 12178962 12179150 -190906382 - LTR12 LTR ERV1 -132 582 377 367 213 11 0 chr5 12179151 12179245 -190906287 - LTR30 LTR ERV1 -80 642 548 6114 96 43 61 chr5 12179245 12180419 -190905113 - pTR5 LTR ERV1 -409 2029 741 609 277 104 38 chr5 12181022 12181581 -190903951 + L1ME LINE L1 4885 5333 -813 340 264 47 0 chr5 12181594 12181700 -190903832 + L1ME LINE L1 5543 5653 -468 593 304 104 36 chr5 12182892 12183363 -190902169 - MLT1K LTR MaLR -6 582 80 24 32 0 0 chr5 12183667 12183698 -190901834 + AT_rich Low_complexity Low_complexity 1 31 0 391 184 10 10 chr5 12185627 12185725 -190899807 + CT-rich Low_complexity Low_complexity 4 101 0 237 266 0 0 chr5 12187087 12187181 -190898351 + (CA)n Simple_repeat Simple_repeat 2 95 0 234 191 0 0 chr5 12187519 12187566 -190897966 + GA-rich Low_complexity Low_complexity 3 49 0 349 324 55 14 chr5 12187578 12187723 -190897809 + MIR SINE MIR 3 153 -109 21 0 0 0 chr5 12190213 12190234 -190895298 + AT_rich Low_complexity Low_complexity 1 21 0 2325 250 42 44 chr5 12191328 12192680 -190892852 + L1MB8 LINE L1 914 2258 -4701 829 259 48 48 chr5 12192718 12193027 -190892505 - MLT1C LTR MaLR -3 464 156 2141 264 75 48 chr5 12193035 12193813 -190891719 + L1MB8 LINE L1 3556 4312 -2645 264 59 0 0 chr5 12193813 12193847 -190891685 + (CA)n Simple_repeat Simple_repeat 1 34 0 576 106 0 141 chr5 12193853 12193995 -190891537 + L1MA8 LINE L1 6169 6290 -1 2141 264 75 48 chr5 12193995 12194502 -190891030 + L1MB8 LINE L1 4316 4883 -2074 4040 212 37 25 chr5 12194526 12196076 -190889456 - L1MB3 LINE L1 -12 6171 4597 1077 264 30 15 chr5 12196080 12196474 -190889058 + L1MB8 LINE L1 4875 5274 -1683 * 2319 223 25 28 chr5 12196469 12196683 -190888849 + L1MB8 LINE L1 5689 5902 -1087 2398 75 0 0 chr5 12196683 12196976 -190888556 + AluY SINE Alu 1 293 -18 2319 223 25 28 chr5 12196976 12197895 -190887637 + L1MB8 LINE L1 5902 6989 0 265 314 88 10 chr5 12199932 12200034 -190885498 + L2 LINE L2 2872 2981 -332 23 0 0 0 chr5 12200406 12200429 -190885103 + AT_rich Low_complexity Low_complexity 1 23 0 247 323 39 23 chr5 12200788 12200918 -190884614 - L2 LINE L2 0 3272 3141 4179 118 53 16 chr5 12202129 12202824 -190882708 + L1PA13 LINE L1 5443 6163 0 1678 189 123 3 chr5 12203195 12203384 -190882148 - MSTA LTR MaLR 0 428 263 309 26 0 0 chr5 12203384 12203422 -190882110 + (GA)n Simple_repeat Simple_repeat 2 39 0 1678 189 123 3 chr5 12203422 12203614 -190881918 - MSTA LTR MaLR -165 263 1 2227 226 107 16 chr5 12203661 12204648 -190880884 + L1MC/D LINE L1 4362 5446 -743 4146 109 10 0 chr5 12204695 12205312 -190880220 - L1P LINE L1 -2329 3817 3195 6566 85 1 3 chr5 12205315 12206294 -190879238 + L1PA8 LINE L1 5179 6155 -17 582 114 0 0 chr5 12206297 12206385 -190879147 + (TA)n Simple_repeat Simple_repeat 1 88 0 32 86 0 0 chr5 12207538 12207619 -190877913 + AT_rich Low_complexity Low_complexity 1 81 0 26 50 0 0 chr5 12207960 12208000 -190877532 + AT_rich Low_complexity Low_complexity 1 40 0 284 367 36 22 chr5 12208231 12208509 -190877023 + L1MEc LINE L1 34 315 -6081 23 33 0 0 chr5 12209145 12209175 -190876357 + AT_rich Low_complexity Low_complexity 1 30 0 532 286 93 35 chr5 12209192 12209786 -190875746 + L1MEc LINE L1 1039 1666 -4730 27 0 0 0 chr5 12210217 12210244 -190875288 + AT_rich Low_complexity Low_complexity 1 27 0 357 134 12 24 chr5 12210925 12211007 -190874525 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 192 152 0 0 chr5 12211053 12211086 -190874446 + GA-rich Low_complexity Low_complexity 3 35 0 2270 60 0 0 chr5 12211517 12211798 -190873734 - L1PA7 LINE L1 -8 6146 5866 227 203 17 0 chr5 12214601 12214660 -190870872 + CT-rich Low_complexity Low_complexity 1 60 0 328 298 89 0 chr5 12214954 12215078 -190870454 - L2 LINE L2 0 3313 3179 186 375 0 0 chr5 12215617 12215681 -190869851 - L2 LINE L2 -298 2974 2911 2075 137 42 28 chr5 12216038 12216397 -190869135 - THE1B LTR MaLR 0 364 1 430 374 40 34 chr5 12216673 12216994 -190868538 + L2 LINE L2 2325 2647 -667 1135 36 0 0 chr5 12217351 12217488 -190868044 - L1PA5 LINE L1 0 6154 6018 215 226 170 0 chr5 12217740 12217793 -190867739 + L2 LINE L2 3186 3247 -25 712 256 103 38 chr5 12218166 12218564 -190866968 + MER45B DNA AcHobo 3 424 -616 * 974 217 46 11 chr5 12218563 12218844 -190866688 + MER45R DNA AcHobo 1291 1581 0 1442 184 7 47 chr5 12218929 12219228 -190866304 + AluJb SINE Alu 1 287 -25 292 324 89 11 chr5 12220472 12220651 -190864881 + HAL1b LINE L1 247 439 -909 434 288 70 77 chr5 12220761 12221179 -190864353 - MLT1J LTR MaLR -10 501 6 440 327 101 19 chr5 12222081 12222677 -190862855 + L1M4 LINE L1 4193 4837 -1309 254 252 86 7 chr5 12223080 12223219 -190862313 + L1ME LINE L1 4366 4515 -1631 236 269 2 30 chr5 12223214 12223320 -190862212 + L1ME LINE L1 5318 5420 -701 * 526 266 27 73 chr5 12223347 12223536 -190861996 + L1ME LINE L1 5508 5648 -522 2167 116 3 0 chr5 12223536 12223839 -190861693 - AluSx SINE Alu -6 306 3 526 266 27 73 chr5 12223839 12223883 -190861649 + L1ME LINE L1 5648 5692 -478 754 285 64 13 chr5 12224047 12224440 -190861092 - L1M4 LINE L1 -1556 4590 4178 368 298 81 44 chr5 12224449 12224699 -190860833 - L1MEd LINE L1 -4688 1622 1383 2332 66 0 3 chr5 12224699 12224986 -190860546 - AluY SINE Alu -5 306 21 368 298 81 44 chr5 12224986 12225589 -190859943 - L1MEd LINE L1 -4927 1383 708 5374 238 61 51 chr5 12225905 12229289 -190856243 - L1MC2 LINE L1 -12 6612 3195 3026 147 18 110 chr5 12229299 12230043 -190855489 - L1MA7 LINE L1 -22 6269 5595 253 190 0 0 chr5 12230062 12230120 -190855412 - L1MC2 LINE L1 -3234 3192 3135 4093 49 8 0 chr5 12230317 12230831 -190854701 - L1PA5 LINE L1 -1 6153 5636 1071 269 60 8 chr5 12230836 12231590 -190853942 - L1MC2 LINE L1 -4390 2217 1230 783 337 52 30 chr5 12231889 12232447 -190853085 - ERVL LTR ERVL -1053 4640 4032 2108 145 34 8 chr5 12232504 12232855 -190852677 + THE1C LTR MaLR 1 360 -15 1877 159 26 34 chr5 12232984 12233362 -190852170 + THE1C LTR MaLR 1 375 0 251 277 30 0 chr5 12233546 12233647 -190851885 - ERVL LTR ERVL -1731 3265 3162 6391 96 8 4 chr5 12233952 12234909 -190850623 + L1PA10 LINE L1 5200 6159 -9 1106 171 0 0 chr5 12234909 12235090 -190850442 + AluJb SINE Alu 129 309 -3 21 0 0 0 chr5 12236304 12236325 -190849207 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr5 12237192 12237222 -190848310 + AT_rich Low_complexity Low_complexity 1 30 0 2305 127 50 21 chr5 12237815 12238029 -190847503 - L1PA13 LINE L1 -3 6160 5954 2366 75 0 3 chr5 12238029 12238321 -190847211 - AluY SINE Alu -9 302 12 2305 127 50 21 chr5 12238321 12238530 -190847002 - L1PA13 LINE L1 -209 5954 5725 1992 131 0 42 chr5 12238527 12238809 -190846723 + L1P4 LINE L1 5410 5677 -491 * 2457 65 7 10 chr5 12238809 12239118 -190846414 + AluY SINE Alu 4 311 0 1992 131 0 42 chr5 12239118 12239171 -190846361 + L1P4 LINE L1 5677 5731 -437 23 0 0 0 chr5 12242100 12242123 -190843409 + AT_rich Low_complexity Low_complexity 1 23 0 2780 13 0 0 chr5 12242338 12242641 -190842891 + AluYa5 SINE Alu 1 303 -8 498 212 10 0 chr5 12244225 12244324 -190841208 - MER94 DNA DNA -33 101 2 261 83 0 0 chr5 12245130 12245166 -190840366 + (T)n Simple_repeat Simple_repeat 1 36 0 390 271 100 29 chr5 12245173 12245343 -190840189 + L1ME1 LINE L1 5911 6092 -74 7608 27 0 70 chr5 12245365 12246470 -190839062 - L1PA3 LINE L1 -3 6152 5073 2484 129 6 3 chr5 12246917 12247280 -190838252 - THE1B LTR MaLR 0 364 1 1147 230 34 73 chr5 12249029 12249412 -190836120 - MLT1A2 LTR MaLR -6 368 1 536 217 70 0 chr5 12250069 12250198 -190835334 + L1MC3 LINE L1 36 173 -6223 * 1033 154 0 6 chr5 12250197 12250372 -190835160 - L1P LINE L1 -1387 4759 4586 196 214 0 24 chr5 12250372 12250414 -190835118 + MER5A DNA MER1_type 148 188 -1 1266 168 39 0 chr5 12250434 12250666 -190834866 + L1MB3 LINE L1 5664 5904 -279 1889 141 14 4 chr5 12250669 12250946 -190834586 + AluSq SINE Alu 1 280 -33 414 0 0 0 chr5 12250946 12250992 -190834540 + (CA)n Simple_repeat Simple_repeat 1 46 0 524 300 22 11 chr5 12250992 12251172 -190834360 + L1MC3 LINE L1 160 341 -6055 850 246 97 8 chr5 12251300 12251548 -190833984 + MER57A LTR ERV1 132 401 -2 893 224 110 24 chr5 12252599 12252982 -190832550 + MER57-int LTR ERV1 1040 1455 -3481 6520 31 4 0 chr5 12253036 12253806 -190831726 - L1PA4 LINE L1 0 6155 5383 4428 28 4 0 chr5 12253802 12254344 -190831188 - L1PA4 LINE L1 -2505 3641 3098 * 234 0 0 0 chr5 12254480 12254506 -190831026 + (TA)n Simple_repeat Simple_repeat 2 27 0 602 208 26 106 chr5 12254664 12254826 -190830706 + MER57-int LTR ERV1 2331 2504 -2619 1853 168 0 0 chr5 12254826 12255100 -190830432 + AluSx SINE Alu 11 284 -28 378 0 0 0 chr5 12255104 12255146 -190830386 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 602 208 26 106 chr5 12255146 12255242 -190830290 + MER57-int LTR ERV1 2507 2573 -2550 404 266 37 27 chr5 12255214 12255402 -190830130 + MER57-int LTR ERV1 2457 2646 -2290 * 1077 198 20 41 chr5 12255477 12255785 -190829747 + MER57-int LTR ERV1 3339 5488 -1498 390 196 33 22 chr5 12255785 12255877 -190829655 + Alu SINE Alu 202 294 -7 1053 236 14 82 chr5 12256535 12256939 -190828593 + MER57-int LTR ERV1 5830 6387 -1357 986 339 37 55 chr5 12257411 12257681 -190827851 + MER57-int LTR ERV1 6232 6505 -1032 2137 112 3 7 chr5 12257681 12257977 -190827555 + AluSg SINE Alu 1 295 -15 986 339 37 55 chr5 12257977 12258642 -190826890 + MER57-int LTR ERV1 6505 7151 -386 717 268 80 23 chr5 12258691 12259045 -190826487 + MER57A LTR ERV1 69 389 -14 792 281 79 76 chr5 12259083 12259664 -190825868 + L1MC3 LINE L1 360 942 -5454 939 259 128 34 chr5 12259691 12260073 -190825459 + L1MCb LINE L1 12 429 -5616 1368 286 65 19 chr5 12260159 12261146 -190824386 + L1MCb LINE L1 2732 3763 -2801 2174 279 63 21 chr5 12261391 12262556 -190822976 + L1MC3 LINE L1 2383 3596 -2619 872 299 63 0 chr5 12262569 12262933 -190822599 + L1MC3 LINE L1 3797 4183 -2032 198 50 75 0 chr5 12262933 12262973 -190822559 + (TA)n Simple_repeat Simple_repeat 1 43 0 275 130 65 11 chr5 12263006 12263098 -190822434 + (TA)n Simple_repeat Simple_repeat 1 97 0 5452 227 65 16 chr5 12263100 12263738 -190821794 + L1MC3 LINE L1 4876 5481 -734 201 74 0 0 chr5 12263738 12263765 -190821767 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 5452 227 65 16 chr5 12263765 12264643 -190820889 + L1MC3 LINE L1 5481 5091 -1124 282 116 0 0 chr5 12264643 12264686 -190820846 + (CA)n Simple_repeat Simple_repeat 2 44 0 5452 227 65 16 chr5 12264686 12265089 -190820443 + L1MC3 LINE L1 5090 5472 -743 1461 221 98 51 chr5 12265090 12265557 -190819975 - MLT1D LTR MaLR 0 505 17 198 71 0 0 chr5 12265568 12265596 -190819936 + (CA)n Simple_repeat Simple_repeat 2 29 0 263 143 0 100 chr5 12265602 12265672 -190819860 + L1MC3 LINE L1 6946 7008 -846 282 106 21 0 chr5 12265695 12265742 -190819790 - L1MA9 LINE L1 -1 6311 6264 568 207 67 0 chr5 12265745 12265895 -190819637 + L1MC3 LINE L1 7014 7173 -681 1168 237 20 4 chr5 12265925 12266366 -190819166 + L1MC3 LINE L1 7274 7807 -47 697 280 45 48 chr5 12266395 12266978 -190818554 + L1MEc LINE L1 1000 1580 -4816 2586 99 8 0 chr5 12267032 12267384 -190818148 + THE1A LTR MaLR 1 355 0 11241 100 12 2 chr5 12267384 12267863 -190817669 + THE1A-int LTR MaLR 1 474 -1106 225 0 0 0 chr5 12267863 12267888 -190817644 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 11241 100 12 2 chr5 12267888 12268972 -190816560 + THE1A-int LTR MaLR 474 1580 0 2479 85 9 0 chr5 12268972 12269300 -190816232 + THE1A LTR MaLR 1 331 -24 840 105 0 0 chr5 12269341 12269455 -190816077 + THE1A LTR MaLR 1 114 -241 1450 245 64 52 chr5 12269507 12270173 -190815359 + L1MEc LINE L1 1670 2326 -3889 424 126 10 39 chr5 12270173 12270276 -190815256 + L1MA9 LINE L1 6202 6301 -11 1450 245 64 52 chr5 12270276 12270344 -190815188 + L1MEc LINE L1 2326 2392 -3823 2075 100 60 0 chr5 12270344 12270625 -190814907 - AluSq SINE Alu -15 298 1 1450 245 64 52 chr5 12270625 12270796 -190814736 + L1MEc LINE L1 2392 2549 -3666 1416 130 5 0 chr5 12271397 12271597 -190813935 - AluSp SINE Alu -5 308 108 1857 283 49 33 chr5 12271713 12272720 -190812812 + L1MEc LINE L1 3391 4413 -1802 1171 202 27 12 chr5 12272738 12272995 -190812537 + MLT1B LTR MaLR 130 390 0 591 263 38 19 chr5 12273042 12273308 -190812224 + L1MEc LINE L1 5027 5297 -918 40 37 0 0 chr5 12273360 12273414 -190812118 + AT_rich Low_complexity Low_complexity 1 54 0 8861 192 56 20 chr5 12273468 12276098 -190809434 + L1M1 LINE L1 2920 5658 -642 2024 142 3 6 chr5 12276146 12276497 -190809035 - AluSq SINE Alu 0 350 1 235 180 0 0 chr5 12276515 12276565 -190808967 + L1MA10 LINE L1 6282 6331 -3 4056 158 20 4 chr5 12277313 12278020 -190807512 - L1PA16 LINE L1 -5 6161 5444 237 196 0 0 chr5 12279225 12279276 -190806256 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 2475 64 0 0 chr5 12279864 12280160 -190805372 + AluY SINE Alu 1 296 -15 1330 248 85 25 chr5 12280675 12281110 -190804422 + MLT1F LTR MaLR 82 542 0 184 328 0 16 chr5 12285781 12285842 -190799690 + MIR SINE MIR 74 133 -75 1492 228 35 68 chr5 12286881 12287292 -190798240 + MLT1C LTR MaLR 1 395 -72 543 190 112 9 chr5 12287292 12287408 -190798124 - FLAM_A SINE Alu -1 132 5 1492 228 35 68 chr5 12287408 12287479 -190798053 + MLT1C LTR MaLR 395 467 0 1571 168 31 25 chr5 12287494 12287862 -190797670 - Charlie3 DNA MER1_type 0 2712 1 256 295 93 23 chr5 12288386 12288515 -190797017 + MIR SINE MIR 108 245 -17 194 284 181 8 chr5 12288662 12288789 -190796743 - MIR SINE MIR -11 251 103 242 267 56 11 chr5 12289637 12289727 -190795805 - MIR SINE MIR -103 159 66 1233 212 41 132 chr5 12289730 12290418 -190795114 + L1MC3 LINE L1 6675 7299 -486 929 252 56 51 chr5 12290431 12290859 -190794673 - MLT1C LTR MaLR -14 453 24 1828 184 123 2 chr5 12290886 12291315 -190794217 + L1MC3 LINE L1 7296 7776 -9 186 133 0 0 chr5 12292224 12292254 -190793278 + (TG)n Simple_repeat Simple_repeat 2 31 0 223 402 0 0 chr5 12293757 12293849 -190791683 - MIR SINE MIR -72 190 99 2529 127 6 0 chr5 12297336 12297698 -190787834 + THE1B LTR MaLR 1 364 0 1024 295 54 28 chr5 12297744 12298243 -190787289 - L2 LINE L2 -646 2668 2157 196 397 13 0 chr5 12298636 12298714 -190786818 + MIR SINE MIR 20 98 -164 2064 189 25 7 chr5 12300007 12300451 -190785081 + MER66A LTR ERV1 27 478 0 195 42 0 0 chr5 12302924 12302948 -190782584 + (TTA)n Simple_repeat Simple_repeat 2 25 0 14889 101 8 5 chr5 12302952 12305955 -190779577 - L1PA7 LINE L1 -13 6141 3129 698 107 9 0 chr5 12305955 12306067 -190779465 + L1P LINE L1 4649 4761 -1385 13537 142 26 110 chr5 12306100 12309541 -190775991 - L1PA7 LINE L1 -2994 3152 1 5941 116 19 2 chr5 12359646 12360527 -190725005 - THE1A-int LTR MaLR -684 896 1 2155 130 11 26 chr5 12360527 12360874 -190724658 - THE1A LTR MaLR 0 355 14 1343 185 181 0 chr5 12361048 12361155 -190724377 + AluSx SINE Alu 3 89 -213 396 0 0 0 chr5 12361155 12361199 -190724333 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1343 185 181 0 chr5 12361199 12361345 -190724187 + AluSx SINE Alu 89 302 0 1907 208 75 23 chr5 12361587 12362067 -190723465 - MLT1D LTR MaLR 0 505 1 318 329 106 29 chr5 12362232 12362582 -190722950 - L2 LINE L2 -341 2973 2597 1424 186 0 40 chr5 12362996 12363297 -190722235 + L1MA9 LINE L1 6024 6312 0 280 208 0 0 chr5 12366430 12366483 -190719049 - MIR SINE MIR -32 230 178 406 288 28 79 chr5 12368509 12368724 -190716808 - MIR SINE MIR -56 206 3 203 133 0 0 chr5 12369377 12369407 -190716125 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 14783 21 0 0 chr5 12369721 12372628 -190712904 + L1PA2 LINE L1 3244 6153 -2 1611 199 80 0 chr5 12372630 12372992 -190712540 + L1MD3 LINE L1 7432 7822 -173 3471 214 58 22 chr5 12372998 12373928 -190711604 + L1MB2 LINE L1 5174 6139 -32 1971 155 0 0 chr5 12373950 12374275 -190711257 - AluSx SINE Alu 0 325 1 308 337 58 5 chr5 12374275 12374480 -190711052 + L1MC4a LINE L1 5843 6058 -1750 21 104 0 0 chr5 12374543 12374620 -190710912 + AT_rich Low_complexity Low_complexity 1 77 0 418 351 145 22 chr5 12374648 12375104 -190710428 - L2 LINE L2 -2352 962 451 1258 254 85 7 chr5 12375338 12375795 -190709737 - MLT2B2 LTR ERVL -20 495 3 418 330 112 31 chr5 12375816 12376174 -190709358 - L2 LINE L2 -2697 617 231 24539 41 43 2 chr5 12377310 12380335 -190705197 - L1P LINE L1 -2997 3149 1 2350 233 66 13 chr5 12380331 12381031 -190704501 - L1 LINE L1 -947 5199 4463 * 341 230 63 40 chr5 12381083 12381209 -190704323 - L1MC/D LINE L1 -2066 5742 5614 1208 71 7 7 chr5 12381261 12381416 -190704116 - L1PB1 LINE L1 -1 6150 5996 406 324 134 44 chr5 12381504 12382250 -190703282 - L1MC/D LINE L1 -946 5200 4377 387 329 41 21 chr5 12382517 12382857 -190702675 + L1M4 LINE L1 3715 4061 -2085 4090 260 64 30 chr5 12384315 12384859 -190700673 - L1M4 LINE L1 -1471 4675 4151 1305 260 109 60 chr5 12384859 12385456 -190700076 + MLT1E2 LTR MaLR 1 626 0 4090 260 64 30 chr5 12385456 12386764 -190698768 - L1M4 LINE L1 -1995 4151 2760 206 347 0 0 chr5 12388021 12388096 -190697436 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 209 30 61 0 chr5 12389133 12389166 -190696366 + (CAGA)n Simple_repeat Simple_repeat 1 35 0 306 0 0 0 chr5 12394278 12394312 -190691220 + (CA)n Simple_repeat Simple_repeat 2 35 0 186 216 198 45 chr5 12394363 12394474 -190691058 - MIR SINE MIR -71 191 64 350 306 32 8 chr5 12394488 12394612 -190690920 + MIR SINE MIR 13 139 -123 186 191 0 0 chr5 12394763 12394805 -190690727 + CT-rich Low_complexity Low_complexity 2 43 0 401 145 13 0 chr5 12394841 12394917 -190690615 + CT-rich Low_complexity Low_complexity 3 79 0 186 133 0 0 chr5 12395094 12395124 -190690408 + (T)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr5 12396035 12396057 -190689475 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr5 12399473 12399494 -190686038 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr5 12399865 12399914 -190685618 + AT_rich Low_complexity Low_complexity 1 49 0 1292 177 0 57 chr5 12400067 12400315 -190685217 + AluSq SINE Alu 1 234 -79 254 299 52 31 chr5 12400557 12400654 -190684878 - L2 LINE L2 -15 3298 3200 275 244 13 13 chr5 12400918 12400996 -190684536 + MIR SINE MIR 156 233 -29 304 262 52 95 chr5 12401100 12401405 -190684127 - L2 LINE L2 -640 2674 2383 239 291 145 37 chr5 12402367 12402663 -190682869 - MLT1J1 LTR MaLR -41 405 78 22 35 0 0 chr5 12403563 12403592 -190681940 + AT_rich Low_complexity Low_complexity 1 29 0 2315 105 3 0 chr5 12403714 12404010 -190681522 + AluSp SINE Alu 1 297 -16 320 298 65 48 chr5 12404103 12404503 -190681029 + L1M4 LINE L1 4513 4919 -1227 2920 91 3 0 chr5 12404593 12404956 -190680576 + THE1B LTR MaLR 1 364 0 270 212 9 88 chr5 12405315 12405428 -190680104 + L1M LINE L1 5326 5429 -2379 197 265 59 15 chr5 12405494 12405562 -190679970 - L2 LINE L2 0 3313 3243 24 77 0 0 chr5 12405849 12405901 -190679631 + AT_rich Low_complexity Low_complexity 1 52 0 24 67 0 0 chr5 12407489 12407534 -190677998 + AT_rich Low_complexity Low_complexity 1 45 0 23 68 0 0 chr5 12408507 12408551 -190676981 + AT_rich Low_complexity Low_complexity 1 44 0 203 0 37 0 chr5 12409649 12409676 -190675856 + (TG)n Simple_repeat Simple_repeat 1 28 0 2143 159 85 10 chr5 12412492 12412882 -190672650 - MSTA LTR MaLR 0 428 10 1900 195 34 6 chr5 12413034 12413383 -190672149 + MLT1A1 LTR MaLR 7 365 0 1158 233 131 23 chr5 12413483 12413889 -190671643 + MLT1C LTR MaLR 1 446 -11 967 318 23 8 chr5 12413898 12414250 -190671282 + ERVL LTR ERVL 830 1186 -3810 866 259 63 22 chr5 12414607 12414924 -190670608 + ERVL LTR ERVL 1675 2004 -2992 446 291 58 39 chr5 12414953 12415159 -190670373 + LTR1B LTR ERV1 39 248 -578 570 249 65 6 chr5 12415198 12415367 -190670165 + LTR28 LTR ERV1 396 574 -446 229 242 20 141 chr5 12415379 12415528 -190670004 + LTR28 LTR ERV1 848 978 -42 1187 345 28 13 chr5 12415574 12416177 -190669355 + ERVL LTR ERVL 2029 2640 -3014 420 365 14 0 chr5 12416225 12416370 -190669162 + ERVL LTR ERVL 2713 2859 -2137 323 292 44 9 chr5 12416413 12416526 -190669006 + ERVL LTR ERVL 2937 3053 -1943 290 312 49 28 chr5 12416660 12416907 -190668625 + ERVL LTR ERVL 3288 3539 -2225 569 332 80 44 chr5 12416944 12417921 -190667611 + ERVL LTR ERVL 3275 4610 -1154 273 319 9 0 chr5 12418525 12418641 -190666891 + LTR16A LTR ERVL 256 372 -78 276 284 121 21 chr5 12419193 12419334 -190666198 - MIR SINE MIR -86 176 22 183 415 62 8 chr5 12424596 12424726 -190660806 + L2 LINE L2 3136 3272 0 273 283 33 33 chr5 12424835 12424927 -190660605 + GA-rich Low_complexity Low_complexity 4 95 0 1209 234 62 9 chr5 12425713 12426050 -190659482 + MLT1A1 LTR MaLR 11 365 0 253 333 24 0 chr5 12426509 12426593 -190658939 - L2 LINE L2 -4 3309 3224 352 322 54 20 chr5 12426810 12426959 -190658573 - L2 LINE L2 -250 3063 2910 182 306 85 45 chr5 12427508 12427707 -190657825 - L2 LINE L2 -416 2898 2692 21 0 0 0 chr5 12427783 12427804 -190657728 + AT_rich Low_complexity Low_complexity 1 21 0 4834 177 23 11 chr5 12428570 12429795 -190655737 + L1MA4 LINE L1 5062 6300 0 1524 187 31 48 chr5 12429853 12429937 -190655595 + MER7A DNA MER2_type 2 86 -2952 1917 119 50 11 chr5 12429937 12430214 -190655318 - AluSx SINE Alu -24 288 1 1524 187 31 48 chr5 12430214 12430482 -190655050 + MER7A DNA MER2_type 86 346 0 402 237 30 108 chr5 12430849 12431081 -190654451 - MLT1I LTR MaLR 0 409 196 1759 77 0 104 chr5 12431519 12431846 -190653686 - L1P LINE L1 -921 5225 4933 26 30 0 0 chr5 12434636 12434669 -190650863 + AT_rich Low_complexity Low_complexity 1 33 0 294 266 28 9 chr5 12436335 12436444 -190649088 - L1MC4 LINE L1 -134 7908 7798 269 333 123 49 chr5 12436968 12437211 -190648321 + L2 LINE L2 3053 3313 0 356 360 114 24 chr5 12437646 12438384 -190647148 - L1M4 LINE L1 -2969 3177 2374 202 282 0 0 chr5 12438507 12438578 -190646954 + A-rich Low_complexity Low_complexity 1 71 0 186 143 0 0 chr5 12438610 12438645 -190646887 + (CA)n Simple_repeat Simple_repeat 2 36 0 1502 214 3 28 chr5 12438863 12439180 -190646352 + AluJb SINE Alu 1 309 -3 300 281 133 56 chr5 12439706 12439902 -190645630 + L1MC4a LINE L1 5783 5993 -1815 1793 186 0 0 chr5 12440026 12440306 -190645226 - AluJb SINE Alu -20 292 13 247 308 97 43 chr5 12440409 12440851 -190644681 + L1MC4a LINE L1 6219 6684 -1124 12176 207 48 15 chr5 12440969 12441708 -190643824 + L1M1 LINE L1 16 729 -6927 180 77 0 0 chr5 12441708 12441734 -190643798 + (TAA)n Simple_repeat Simple_repeat 2 27 0 12176 207 48 15 chr5 12441734 12446205 -190639327 + L1M1 LINE L1 729 6913 -743 369 221 59 22 chr5 12446487 12446623 -190638909 + L1MC4 LINE L1 7110 7250 -792 217 158 26 0 chr5 12447812 12447850 -190637682 + (TG)n Simple_repeat Simple_repeat 2 40 0 301 276 76 9 chr5 12449080 12449185 -190636347 - MIR3 SINE MIR -12 196 85 1129 260 123 20 chr5 12449941 12449991 -190635541 + L1MD3 LINE L1 6550 6593 -1265 273 29 0 0 chr5 12449991 12450025 -190635507 + (CA)n Simple_repeat Simple_repeat 1 34 0 1129 260 123 20 chr5 12450025 12450605 -190634927 + L1MD3 LINE L1 6593 7275 -583 481 227 47 0 chr5 12450609 12450737 -190634795 + MLT1F1 LTR MaLR 2 135 -432 21 0 0 0 chr5 12451266 12451287 -190634245 + AT_rich Low_complexity Low_complexity 1 21 0 2560 45 0 10 chr5 12451407 12451720 -190633812 - AluY SINE Alu -1 310 1 272 306 0 9 chr5 12452055 12452166 -190633366 + (CTA)n Simple_repeat Simple_repeat 1 110 0 519 155 0 0 chr5 12452171 12452274 -190633258 + (CCA)n Simple_repeat Simple_repeat 1 103 0 541 263 23 0 chr5 12452317 12452450 -190633082 + MER45A DNA AcHobo 3 138 -40 237 227 91 15 chr5 12452450 12452516 -190633016 - L1MCa LINE L1 -6330 96 26 194 0 0 37 chr5 12455552 12455579 -190629953 + (TTA)n Simple_repeat Simple_repeat 2 27 0 417 45 5 119 chr5 12456780 12456982 -190628550 + (TA)n Simple_repeat Simple_repeat 1 179 0 282 77 15 77 chr5 12457007 12457137 -190628395 + (TA)n Simple_repeat Simple_repeat 1 122 0 189 0 0 0 chr5 12458725 12458746 -190626786 + (CA)n Simple_repeat Simple_repeat 1 21 0 384 313 0 11 chr5 12458766 12458945 -190626587 + (CA)n Simple_repeat Simple_repeat 2 178 0 344 341 0 6 chr5 12459005 12459172 -190626360 + (CA)n Simple_repeat Simple_repeat 1 166 0 275 294 26 3 chr5 12460100 12460231 -190625301 - MIR SINE MIR -62 146 13 190 356 70 9 chr5 12460321 12460436 -190625096 - MIR3 SINE MIR -2 206 85 546 146 188 48 chr5 12461762 12461927 -190623605 - MER4A LTR ERV1 -1 464 277 2000 125 8 55 chr5 12461945 12462429 -190623103 - MER4A LTR ERV1 -241 423 1 1273 213 47 18 chr5 12463139 12463477 -190622055 + MLT2D LTR ERVL 7 354 -60 200 234 0 16 chr5 12463562 12463626 -190621906 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 264 130 0 0 chr5 12463639 12463685 -190621847 + (CA)n Simple_repeat Simple_repeat 1 46 0 1533 160 110 22 chr5 12463691 12464010 -190621522 + MER7A DNA MER2_type 1 345 -1 276 111 0 0 chr5 12464010 12464055 -190621477 + (TC)n Simple_repeat Simple_repeat 1 45 0 977 200 53 12 chr5 12464784 12465140 -190620392 + MLT2B3 LTR ERVL 183 554 0 384 260 60 7 chr5 12465220 12465370 -190620162 - MER106B DNA MER1_type -4 1055 898 288 67 22 0 chr5 12466137 12466182 -190619350 - MADE1 DNA Mariner -34 46 1 254 357 31 10 chr5 12468024 12468122 -190617410 - MIR SINE MIR -115 147 48 1388 175 0 0 chr5 12469625 12469842 -190615690 + AluSx SINE Alu 6 222 -90 486 0 0 0 chr5 12469848 12469902 -190615630 + (TAA)n Simple_repeat Simple_repeat 3 56 0 751 253 52 18 chr5 12469902 12470289 -190615243 - L1M4 LINE L1 -2840 4117 3718 2235 104 13 10 chr5 12470862 12471170 -190614362 + AluSx SINE Alu 1 309 -3 602 216 36 18 chr5 12471334 12471556 -190613976 + L1M4 LINE L1 2996 3221 -2925 2025 146 123 5 chr5 12471754 12472137 -190613395 - MSTA LTR MaLR 0 428 1 716 328 123 5 chr5 12472155 12472560 -190612972 - L1M4 LINE L1 -6071 788 336 1805 142 178 8 chr5 12472610 12472976 -190612556 + MSTA LTR MaLR 1 428 0 6009 163 21 42 chr5 12472978 12474188 -190611344 + MSTA-int LTR MaLR 3 1187 -393 1566 200 14 19 chr5 12474746 12475106 -190610426 - L1MD1 LINE L1 -3 6239 5882 2161 113 0 12 chr5 12475142 12475488 -190610044 + L1PB1 LINE L1 5438 5779 -372 554 41 14 0 chr5 12475489 12475562 -190609970 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 552 192 17 0 chr5 12475562 12475682 -190609850 - L1MD1 LINE L1 -45 6197 6076 408 20 0 0 chr5 12475690 12475739 -190609793 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2089 128 48 0 chr5 12475739 12476074 -190609458 + L1PB1 LINE L1 5799 6149 -2 427 233 166 38 chr5 12476096 12476595 -190608937 + Charlie2 DNA MER1_type 2276 2838 -24 1235 219 26 89 chr5 12477829 12477919 -190607613 + MLT1B LTR MaLR 1 95 -295 2116 149 16 19 chr5 12477919 12478295 -190607237 + THE1C LTR MaLR 1 375 0 1235 219 26 89 chr5 12478295 12478620 -190606912 + MLT1B LTR MaLR 95 390 0 1715 189 0 0 chr5 12479365 12479656 -190605876 - AluJb SINE Alu -21 291 1 782 267 84 28 chr5 12480675 12480745 -190604787 - LTR52 LTR ERVL -3 418 353 444 51 0 0 chr5 12480745 12480804 -190604728 + (CA)n Simple_repeat Simple_repeat 2 60 0 782 267 84 28 chr5 12480804 12481126 -190604406 - LTR52 LTR ERVL -68 353 4 1469 233 20 7 chr5 12482862 12483265 -190602267 - L1MD1 LINE L1 0 6242 5835 895 198 28 75 chr5 12483268 12483627 -190601905 - L1MDa LINE L1 -4767 1773 1432 399 106 0 0 chr5 12483738 12483804 -190601728 + (TG)n Simple_repeat Simple_repeat 1 66 0 11736 186 2 0 chr5 12484102 12487534 -190597998 + L1PA14 LINE L1 2766 6160 -1 2352 72 0 0 chr5 12488173 12488464 -190597068 - AluY SINE Alu -20 291 1 380 306 69 43 chr5 12491102 12491334 -190594198 - MIR SINE MIR -16 246 9 1477 248 46 36 chr5 12491679 12492203 -190593329 - MER65B LTR ERV1 0 531 3 1629 233 80 19 chr5 12492329 12492805 -190592727 - MLT1D LTR MaLR 0 505 1 334 230 120 78 chr5 12492944 12493135 -190592397 + L1ME LINE L1 3580 3778 -2368 40808 31 24 1 chr5 12493176 12499184 -190586348 + L1PA2 LINE L1 4 6155 0 346 260 64 87 chr5 12499184 12499357 -190586175 + L1ME LINE L1 3842 4010 -2136 327 287 16 16 chr5 12499373 12499495 -190586037 + L1ME LINE L1 5314 5435 -686 498 128 21 11 chr5 12499836 12499930 -190585602 + L1PA14 LINE L1 6066 6160 -1 5716 176 56 58 chr5 12500558 12502726 -190582806 + L1M4c LINE L1 391 2656 -3726 713 225 110 23 chr5 12502740 12502958 -190582574 + L1MB3 LINE L1 5929 6165 -18 279 180 0 0 chr5 12502979 12503029 -190582503 - MLT1C LTR MaLR -59 408 359 664 249 100 33 chr5 12503474 12503803 -190581729 - MLT1C LTR MaLR -116 351 1 447 269 159 16 chr5 12503812 12503968 -190581564 - MIR SINE MIR -58 150 16 223 217 22 0 chr5 12505578 12505624 -190579908 + GA-rich Low_complexity Low_complexity 2 48 0 249 331 39 62 chr5 12507341 12507471 -190578061 - L2 LINE L2 -5 3308 3182 962 281 19 11 chr5 12507721 12508088 -190577444 - MER63B DNA MER1_type -66 370 1 2571 29 0 16 chr5 12508246 12508562 -190576970 - AluY SINE Alu 0 311 1 26 0 0 0 chr5 12510377 12510403 -190575129 + AT_rich Low_complexity Low_complexity 1 26 0 2714 88 16 3 chr5 12510405 12510789 -190574743 - L1PA10 LINE L1 -11 6157 5769 22 0 0 0 chr5 12513112 12513134 -190572398 + AT_rich Low_complexity Low_complexity 1 22 0 24 91 0 0 chr5 12513532 12513598 -190571934 + AT_rich Low_complexity Low_complexity 1 66 0 189 0 0 0 chr5 12515520 12515541 -190569991 + (A)n Simple_repeat Simple_repeat 1 21 0 225 65 0 0 chr5 12515577 12515608 -190569924 + (TC)n Simple_repeat Simple_repeat 2 32 0 255 31 0 0 chr5 12515608 12515640 -190569892 + (CA)n Simple_repeat Simple_repeat 1 32 0 469 160 30 8 chr5 12519185 12519316 -190566216 + (TA)n Simple_repeat Simple_repeat 2 135 0 2259 105 0 3 chr5 12519766 12520072 -190565460 + AluSg SINE Alu 1 305 -5 282 29 0 0 chr5 12520155 12520190 -190565342 + (TG)n Simple_repeat Simple_repeat 2 36 0 1380 149 65 68 chr5 12520903 12521258 -190564274 - MLT1A2 LTR MaLR -20 354 1 25 0 0 0 chr5 12521365 12521390 -190564142 + AT_rich Low_complexity Low_complexity 1 25 0 2775 127 7 7 chr5 12522332 12522766 -190562766 - MER57B LTR ERV1 0 434 1 436 174 51 14 chr5 12523387 12523525 -190562007 + CT-rich Low_complexity Low_complexity 4 146 0 1799 158 35 0 chr5 12523530 12523814 -190561718 - AluJb SINE Alu -8 304 11 209 77 51 0 chr5 12524108 12524147 -190561385 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 1040 250 28 0 chr5 12524235 12524487 -190561045 + L1ME3 LINE L1 5896 6154 -8 230 196 0 0 chr5 12525202 12525248 -190560284 - L2 LINE L2 -4 3309 3264 674 303 0 5 chr5 12525518 12525713 -190559819 - MIR SINE MIR -42 220 27 826 277 81 63 chr5 12526214 12526744 -190558788 + MLT1F1 LTR MaLR 18 559 -8 214 275 154 0 chr5 12527259 12527350 -190558182 - L2 LINE L2 -5 3308 3204 183 111 0 0 chr5 12527396 12527423 -190558109 - L2 LINE L2 -22 3250 3224 201 375 34 0 chr5 12527458 12527546 -190557986 - MIR SINE MIR -124 138 48 304 294 86 37 chr5 12528904 12529091 -190556441 + MIR SINE MIR 65 260 -2 1675 132 191 38 chr5 12529435 12529806 -190555726 + MSTA LTR MaLR 1 428 0 873 258 30 17 chr5 12530249 12530548 -190554984 - L1M4 LINE L1 -5309 1233 931 1421 175 62 31 chr5 12531387 12531741 -190553791 - MLT1A1 LTR MaLR 0 365 1 769 258 114 54 chr5 12634251 12634817 -190450715 - MLT1F1 LTR MaLR -2 593 14 449 243 20 0 chr5 12635149 12635301 -190450231 - L1 LINE L1 -2793 3353 3199 5701 186 30 0 chr5 12635306 12636427 -190449105 + L1 LINE L1 3729 4883 -1263 2873 87 14 2 chr5 12636529 12636945 -190448587 + HERVL-A1 LTR ERVL 5234 5654 0 2941 71 2 40 chr5 12636945 12637365 -190448167 + MLT2A1 LTR ERVL 1 404 -40 307 196 0 0 chr5 12637377 12637433 -190448099 + L1MC4 LINE L1 6648 6703 -1339 406 91 0 9 chr5 12637449 12637513 -190448019 + MLT2A1 LTR ERVL 388 442 -2 369 123 18 0 chr5 12637514 12637571 -190447961 - MSTA LTR MaLR -370 58 1 1642 262 27 53 chr5 12637574 12638311 -190447221 + L1ME1 LINE L1 5441 6158 -8 2117 150 0 0 chr5 12639011 12639324 -190446208 + AluSq SINE Alu 1 313 0 242 261 35 61 chr5 12639715 12639830 -190445702 - MLT1J2 LTR MaLR -1 449 338 214 296 49 12 chr5 12640155 12640236 -190445296 + L2 LINE L2 2602 2685 -629 564 284 79 41 chr5 12640236 12640553 -190444979 + L2 LINE L2 2818 3146 -167 869 211 6 0 chr5 12640705 12640876 -190444656 - MER2 DNA MER2_type -172 173 2 246 246 15 15 chr5 12640881 12640946 -190444586 + L2 LINE L2 3152 3216 -97 299 296 6 17 chr5 12641067 12641246 -190444286 + (TA)n Simple_repeat Simple_repeat 2 178 0 3500 25 3 0 chr5 12641824 12642270 -190443262 - L1PA3 LINE L1 -484 5671 5225 3944 28 2 0 chr5 12642277 12642773 -190442759 + L1PA3 LINE L1 5671 6167 0 1500 197 112 0 chr5 12644428 12644733 -190440799 + MLT1A1 LTR MaLR 15 353 -12 738 299 37 13 chr5 12646668 12647114 -190438418 - MLT1F1 LTR MaLR -9 558 14 1261 120 0 6 chr5 12647219 12647442 -190438090 + AluSp SINE Alu 132 353 0 267 40 40 20 chr5 12648179 12648229 -190437303 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 298 234 138 48 chr5 12650042 12650187 -190435345 - MLT1J2 LTR MaLR -2 448 291 1904 152 7 0 chr5 12650366 12650662 -190434870 - AluSx SINE Alu -14 298 1 9895 189 33 25 chr5 12652362 12654194 -190431338 - L1M1 LINE L1 -3948 3617 1072 2093 164 5 19 chr5 12654194 12654561 -190430971 - THE1B LTR MaLR 0 364 3 9895 189 33 25 chr5 12654561 12655634 -190429898 - L1M1 LINE L1 -6493 1072 9 524 140 11 0 chr5 12655672 12655765 -190429767 + GA-rich Low_complexity Low_complexity 1 94 0 656 184 32 130 chr5 12655815 12655936 -190429596 + L1MC3 LINE L1 5215 5346 -1041 2206 109 0 0 chr5 12655936 12656229 -190429303 + AluSx SINE Alu 3 295 -17 656 184 32 130 chr5 12656229 12656512 -190429020 + L1MC3 LINE L1 5346 5571 -816 271 227 93 27 chr5 12656532 12656607 -190428925 + L1MC3 LINE L1 5524 5603 -2182 5561 220 53 45 chr5 12656609 12658239 -190427293 + L1MC3 LINE L1 5914 7556 -229 193 229 0 42 chr5 12658855 12658903 -190426629 - L2 LINE L2 -9 3263 3218 2353 73 0 0 chr5 12659327 12659628 -190425904 + AluY SINE Alu 1 301 -10 218 222 0 16 chr5 12660171 12660234 -190425298 + (TA)n Simple_repeat Simple_repeat 2 63 0 414 248 0 44 chr5 12661192 12661329 -190424203 - L1 LINE L1 -3207 2939 2809 23 68 0 0 chr5 12661329 12661373 -190424159 + AT_rich Low_complexity Low_complexity 1 44 0 1064 179 145 4 chr5 12661602 12661753 -190423779 + MLT1C LTR MaLR 28 156 -311 348 24 0 0 chr5 12661753 12661794 -190423738 + (CA)n Simple_repeat Simple_repeat 2 42 0 240 35 0 0 chr5 12661793 12661822 -190423710 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 1064 179 145 4 chr5 12661794 12661904 -190423628 + MLT1C LTR MaLR 156 294 -173 1465 306 72 8 chr5 12662236 12662990 -190422542 + L1ME LINE L1 27 828 -5242 1365 271 103 21 chr5 12663052 12663520 -190422012 - MLT2B1 LTR ERVL -14 506 1 340 248 0 9 chr5 12663531 12663640 -190421892 + L1ME LINE L1 884 991 -5079 198 0 0 0 chr5 12663653 12663675 -190421857 + (TC)n Simple_repeat Simple_repeat 1 22 0 456 136 0 0 chr5 12664107 12664173 -190421359 + AluS SINE Alu 1 66 -244 355 385 95 22 chr5 12664225 12664583 -190420949 + L1ME1 LINE L1 228 611 -5785 1544 225 62 58 chr5 12664588 12665086 -190420446 + MLT1D LTR MaLR 6 505 0 261 254 106 48 chr5 12665137 12665520 -190420012 + L1ME1 LINE L1 670 1025 -5180 4761 281 72 41 chr5 12665748 12668989 -190416543 + L1ME1 LINE L1 1316 4682 -1558 2058 121 0 0 chr5 12668989 12669271 -190416261 + AluSq SINE Alu 21 302 -11 4761 281 72 41 chr5 12669271 12670114 -190415418 + L1ME1 LINE L1 4682 5497 -743 1031 271 54 19 chr5 12670137 12670562 -190414970 + L1ME1 LINE L1 5789 6228 -7 222 338 13 13 chr5 12671198 12671275 -190414257 - L2 LINE L2 -24 3248 3172 247 243 14 27 chr5 12672496 12672570 -190412962 + GA-rich Low_complexity Low_complexity 2 74 0 30 59 0 0 chr5 12672894 12672945 -190412587 + AT_rich Low_complexity Low_complexity 1 51 0 481 281 121 0 chr5 12673501 12673700 -190411832 + L1M4 LINE L1 14 236 -6306 1221 150 50 32 chr5 12673713 12673933 -190411599 + AluSg/x SINE Alu 87 310 0 1499 281 102 31 chr5 12673957 12674545 -190410987 + L1M4 LINE L1 274 903 -5639 479 260 39 43 chr5 12674554 12674762 -190410770 + L1M4 LINE L1 1487 1693 -4953 2379 259 97 24 chr5 12674765 12675918 -190409614 + L1M4 LINE L1 4701 5943 -733 2233 134 32 16 chr5 12675918 12676287 -190409245 - MSTA LTR MaLR 0 428 27 3179 73 4 77 chr5 12676287 12676684 -190408848 + MLT2A1 LTR ERVL 1 403 -41 217 71 0 48 chr5 12676684 12676726 -190408806 + (TA)n Simple_repeat Simple_repeat 2 41 0 3179 73 4 77 chr5 12676726 12676766 -190408766 + MLT2A1 LTR ERVL 403 444 0 31845 82 4 1 chr5 12676770 12681112 -190404420 + HERVL-A1 LTR ERVL 5 4362 -1292 1929 111 26 15 chr5 12681212 12681553 -190403979 + L1MA3 LINE L1 3273 3617 -3948 207 100 0 0 chr5 12681597 12681658 -190403874 + (CA)n Simple_repeat Simple_repeat 1 91 0 207 100 0 0 chr5 12681658 12681688 -190403844 + (CA)n Simple_repeat Simple_repeat 1 30 0 1053 227 141 29 chr5 12681724 12682107 -190403425 + L1MA3 LINE L1 3628 4053 -3512 7463 111 9 0 chr5 12682107 12683202 -190402330 + THE1C-int LTR MaLR 476 1580 0 505 66 197 0 chr5 12683202 12683278 -190402254 + THE1C LTR MaLR 1 91 -284 235 211 0 35 chr5 12683299 12683356 -190402176 + MST-int LTR MaLR 1 55 -1596 2097 125 48 28 chr5 12683368 12683760 -190401772 + MSTA LTR MaLR 29 428 0 5590 166 15 22 chr5 12683760 12685185 -190400347 + L1MA3 LINE L1 5829 7240 -484 2354 97 3 0 chr5 12685185 12685485 -190400047 + AluSp SINE Alu 1 301 -12 5590 166 15 22 chr5 12685485 12685966 -190399566 + L1MA3 LINE L1 7240 7723 -1 411 269 0 14 chr5 12686012 12686157 -190399375 - L1M4 LINE L1 -1114 5032 4890 310 216 85 45 chr5 12686174 12686350 -190399182 - L1MCa LINE L1 -4413 2231 2049 467 31 10 188 chr5 12686393 12686433 -190399099 + MADE1 DNA Mariner 1 16 -64 2439 73 3 0 chr5 12686433 12686736 -190398796 - AluY SINE Alu -7 304 1 467 31 10 188 chr5 12686736 12686791 -190398741 + MADE1 DNA Mariner 16 79 -1 602 246 191 15 chr5 12686817 12687146 -190398386 - L1MCa LINE L1 -4887 1759 1373 303 330 183 16 chr5 12687147 12687529 -190398003 - L1MCa LINE L1 -5202 1344 899 278 295 9 9 chr5 12687607 12687712 -190397820 - L1MCa LINE L1 -5668 874 770 396 296 24 19 chr5 12688184 12688390 -190397142 - L1MCa LINE L1 -6320 222 16 553 234 0 7 chr5 12689625 12689779 -190395753 - L1MA10 LINE L1 -1 6333 6181 543 249 42 14 chr5 12689795 12689989 -190395543 + MLT1F1 LTR MaLR 388 565 -2 26 74 0 0 chr5 12689992 12690046 -190395486 + AT_rich Low_complexity Low_complexity 1 54 0 189 159 0 0 chr5 12691767 12691811 -190393721 + (TG)n Simple_repeat Simple_repeat 1 44 0 290 349 127 16 chr5 12692953 12693142 -190392390 + MIR SINE MIR 15 224 -38 188 381 0 0 chr5 12695430 12695527 -190390005 + L2 LINE L2 2397 2493 -821 553 117 53 12 chr5 12696107 12696278 -190389254 + (CA)n Simple_repeat Simple_repeat 1 178 0 449 86 43 0 chr5 12696358 12696451 -190389081 + (CA)n Simple_repeat Simple_repeat 2 98 0 24 0 0 0 chr5 12697393 12697417 -190388115 + AT_rich Low_complexity Low_complexity 1 24 0 1456 200 28 17 chr5 12697417 12697707 -190387825 - AluJo SINE Alu -19 293 1 201 94 0 0 chr5 12697746 12697778 -190387754 + (CA)n Simple_repeat Simple_repeat 1 32 0 231 36 0 0 chr5 12698067 12698095 -190387437 + (CA)n Simple_repeat Simple_repeat 2 29 0 26 64 0 0 chr5 12698520 12698567 -190386965 + AT_rich Low_complexity Low_complexity 1 47 0 225 247 23 132 chr5 12699085 12699259 -190386273 + MLT1H LTR MaLR 392 546 -3 364 391 31 9 chr5 12699903 12700128 -190385404 - MIR SINE MIR -17 245 16 192 125 0 0 chr5 12700556 12700588 -190384944 + (TG)n Simple_repeat Simple_repeat 1 32 0 2211 109 10 3 chr5 12701592 12701896 -190383636 - AluSc SINE Alu -3 306 1 2446 75 16 0 chr5 12702931 12703236 -190382296 - AluSg SINE Alu 0 310 1 561 232 91 17 chr5 12703590 12703798 -190381734 - MLT1C LTR MaLR -19 428 227 1831 172 0 26 chr5 12704591 12704899 -190380633 - AluSx SINE Alu -12 300 1 232 310 69 0 chr5 12705620 12705736 -190379796 + L2 LINE L2 3189 3312 -1 505 294 133 64 chr5 12705790 12706225 -190379307 - L2 LINE L2 -1 3312 2848 554 262 142 44 chr5 12706258 12706689 -190378843 + L2 LINE L2 2324 2796 -518 258 313 14 21 chr5 12706706 12706850 -190378682 - LTR33 LTR ERVL -2 519 377 33 25 0 0 chr5 12707513 12707553 -190377979 + AT_rich Low_complexity Low_complexity 1 40 0 275 143 0 18 chr5 12707580 12707636 -190377896 + (TG)n Simple_repeat Simple_repeat 1 55 0 1045 240 108 39 chr5 12707654 12708088 -190377444 - MLT2B1 LTR ERVL -54 466 3 21 0 0 0 chr5 12708412 12708433 -190377099 + AT_rich Low_complexity Low_complexity 1 21 0 1130 216 115 49 chr5 12708472 12708940 -190376592 + MLT1D LTR MaLR 7 505 0 432 266 147 39 chr5 12710392 12710678 -190374854 + L2 LINE L2 2027 2343 -971 383 305 107 27 chr5 12712061 12712323 -190373209 - L2 LINE L2 -11 3302 3020 210 91 0 0 chr5 12712355 12712388 -190373144 + (CA)n Simple_repeat Simple_repeat 2 34 0 374 309 0 5 chr5 12712403 12712617 -190372915 + (CA)n Simple_repeat Simple_repeat 1 212 0 459 356 0 0 chr5 12712631 12712811 -190372721 + (CA)n Simple_repeat Simple_repeat 1 180 0 2447 130 8 3 chr5 12713134 12713496 -190372036 + THE1B LTR MaLR 1 364 0 627 391 65 15 chr5 12714075 12714617 -190370915 + L3 LINE CR1 209 777 -800 65 35 0 0 chr5 12715101 12715187 -190370345 + AT_rich Low_complexity Low_complexity 1 86 0 23 0 0 0 chr5 12717522 12717545 -190367987 + AT_rich Low_complexity Low_complexity 1 23 0 689 209 0 0 chr5 12719908 12720056 -190365476 - L1MA3 LINE L1 0 6305 6158 816 155 128 59 chr5 12720060 12720216 -190365316 - MSTA LTR MaLR -228 200 56 1995 136 51 28 chr5 12720216 12720569 -190364963 + THE1B LTR MaLR 4 364 0 11443 105 3 5 chr5 12720569 12722152 -190363380 + THE1B-int LTR MaLR 1 1580 0 1917 140 68 31 chr5 12722152 12722503 -190363029 + THE1B LTR MaLR 1 364 0 816 155 128 59 chr5 12722503 12722531 -190363001 - MSTA LTR MaLR -371 57 1 3347 183 13 10 chr5 12722533 12723243 -190362289 - L1MA3 LINE L1 -145 6160 5449 2664 175 24 0 chr5 12723247 12723934 -190361598 + L1M1 LINE L1 4783 5489 -743 482 135 0 67 chr5 12724057 12724161 -190361371 - L1PB4 LINE L1 -8 6148 6052 1833 268 44 33 chr5 12724180 12724930 -190360602 - L1ME1 LINE L1 -4 6162 5405 22 0 0 0 chr5 12725183 12725205 -190360327 + AT_rich Low_complexity Low_complexity 1 22 0 195 69 0 0 chr5 12725228 12725257 -190360275 + (TATAA)n Simple_repeat Simple_repeat 2 30 0 4918 217 45 63 chr5 12725261 12726549 -190358983 + L1 LINE L1 3302 4551 -1595 826 86 0 0 chr5 12726549 12726665 -190358867 + L1PA13 LINE L1 6041 6156 -7 4918 217 45 63 chr5 12726665 12727165 -190358367 + L1 LINE L1 4551 5058 -1088 1840 264 28 10 chr5 12727506 12728112 -190357420 + L1MD3 LINE L1 7321 7937 -58 773 259 18 54 chr5 12728128 12728460 -190357072 - L1MA9 LINE L1 -40 6272 5953 776 268 20 0 chr5 12730929 12731179 -190354353 + L1MD3 LINE L1 7741 7995 0 277 301 87 0 chr5 12731678 12731781 -190353751 - L2 LINE L2 0 3272 3161 29 60 0 0 chr5 12733493 12733543 -190351989 + AT_rich Low_complexity Low_complexity 1 50 0 189 107 0 0 chr5 12734150 12734178 -190351354 + (GAAAA)n Simple_repeat Simple_repeat 4 31 0 21 36 0 0 chr5 12735059 12735087 -190350445 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr5 12736663 12736686 -190348846 + AT_rich Low_complexity Low_complexity 1 23 0 307 94 0 0 chr5 12738690 12738743 -190346789 + AluSc SINE Alu 247 299 0 265 335 98 56 chr5 12740499 12740980 -190344552 - L2 LINE L2 -3 3310 2810 561 228 35 7 chr5 12741157 12741302 -190344230 - Tigger7 DNA MER2_type 0 2587 2439 * 1646 186 39 6 chr5 12741297 12741630 -190343902 - Tigger7 DNA MER2_type -2143 344 1 669 323 26 9 chr5 12745014 12745246 -190340286 - MIR SINE MIR -18 244 9 738 236 33 19 chr5 12747022 12747234 -190338298 + MER20 DNA MER1_type 1 215 -4 855 108 8 0 chr5 12748483 12748612 -190336920 - L1PA7 LINE L1 -1 6153 6024 220 358 0 0 chr5 12748974 12749041 -190336491 + L2 LINE L2 2448 2514 -800 222 301 83 95 chr5 12749320 12749839 -190335693 - L2 LINE L2 -264 3049 2504 22 56 0 0 chr5 12752529 12752565 -190332967 + AT_rich Low_complexity Low_complexity 1 36 0 498 194 7 21 chr5 12753156 12753300 -190332232 + GA-rich Low_complexity Low_complexity 3 144 0 1805 182 13 3 chr5 12756355 12756777 -190328755 - AluJb SINE Alu 0 425 1 4736 91 48 14 chr5 12756819 12757532 -190328000 - L1PA11 LINE L1 -2 6172 5436 1152 220 81 55 chr5 12758771 12759046 -190326486 + MLT1C LTR MaLR 1 294 -173 2127 126 3 10 chr5 12759046 12759355 -190326177 + AluSq SINE Alu 5 311 -2 1152 220 81 55 chr5 12759355 12759534 -190325998 + MLT1C LTR MaLR 294 467 0 324 279 9 36 chr5 12761964 12762075 -190323457 + MIR SINE MIR 23 130 -132 481 268 118 52 chr5 12762107 12762488 -190323044 - LTR33A LTR ERVL 0 523 118 2691 92 16 3 chr5 12763638 12764008 -190321524 + THE1C LTR MaLR 1 375 0 414 129 5 4 chr5 12764038 12764248 -190321284 - AluSc SINE Alu -18 291 1 21 36 0 0 chr5 12764281 12764309 -190321223 + AT_rich Low_complexity Low_complexity 1 28 0 1282 137 11 157 chr5 12764310 12764667 -190320865 - L1MA4 LINE L1 -281 6019 5715 1998 153 3 0 chr5 12764693 12764993 -190320539 + AluSx SINE Alu 1 301 -11 302 271 126 13 chr5 12765637 12765788 -190319744 + MER58C DNA MER1_type 44 211 -4 302 260 30 40 chr5 12765871 12765971 -190319561 - L2 LINE L2 -6 3307 3209 501 291 77 52 chr5 12766004 12766406 -190319126 - MLT1H LTR MaLR 0 549 138 215 53 0 53 chr5 12768618 12768656 -190316876 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 747 326 94 32 chr5 12769161 12769416 -190316116 + L2 LINE L2 2445 2683 -630 360 0 0 0 chr5 12769416 12769456 -190316076 + (CA)n Simple_repeat Simple_repeat 2 41 0 747 326 94 32 chr5 12769456 12770010 -190315522 + L2 LINE L2 2683 3313 0 229 293 65 49 chr5 12770127 12770250 -190315282 + MIR SINE MIR 23 147 -61 186 402 8 8 chr5 12771852 12771969 -190313563 - MIR3 SINE MIR -54 154 38 929 230 102 59 chr5 12772058 12772120 -190313412 - MLT1C LTR MaLR -4 463 405 2707 75 0 0 chr5 12772120 12772468 -190313064 + L1PA7 LINE L1 5799 6146 -8 929 230 102 59 chr5 12772468 12772844 -190312688 - MLT1C LTR MaLR -62 405 6 268 301 81 97 chr5 12773412 12773598 -190311934 - MIR SINE MIR -12 250 68 21 0 0 0 chr5 12774570 12774591 -190310941 + AT_rich Low_complexity Low_complexity 1 21 0 1462 226 88 94 chr5 12775718 12776590 -190308942 + LTR28 LTR ERV1 1 1020 0 254 372 96 5 chr5 12776696 12776884 -190308648 + MIR SINE MIR 40 244 -18 188 357 161 0 chr5 12777230 12777342 -190308190 + L2 LINE L2 2931 3060 -253 1584 225 59 47 chr5 12778073 12778684 -190306848 + MLT1B-int LTR MaLR 1 726 -645 1304 264 59 25 chr5 12779024 12779429 -190306103 + MLT1B-int LTR MaLR 1317 1735 0 810 216 98 84 chr5 12779444 12779801 -190305731 + MLT1B LTR MaLR 13 374 -16 212 179 0 0 chr5 12780652 12780691 -190304841 + T-rich Low_complexity Low_complexity 1 39 0 1014 82 0 0 chr5 12781206 12781352 -190304180 + (CAT)n Simple_repeat Simple_repeat 3 148 0 743 215 145 8 chr5 12781724 12781966 -190303566 + L1ME1 LINE L1 5887 6161 -5 209 89 44 22 chr5 12783431 12783476 -190302056 + A-rich Low_complexity Low_complexity 2 47 0 1280 174 103 88 chr5 12783605 12784002 -190301530 + MER57A LTR ERV1 1 403 0 331 282 92 6 chr5 12785558 12785732 -190299800 + LTR16A LTR ERVL 161 349 -101 301 188 0 14 chr5 12785752 12785821 -190299711 - MLT2B1 LTR ERVL -47 367 300 198 0 0 0 chr5 12785849 12785871 -190299661 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 742 261 15 44 chr5 12785920 12786192 -190299340 - MLT2B1 LTR ERVL -255 265 2 681 231 11 0 chr5 12786529 12786715 -190298817 - MER53 DNA DNA -1 188 1 1407 229 54 9 chr5 12787977 12788326 -190297206 + MLT1A1 LTR MaLR 1 365 0 28 29 0 0 chr5 12788359 12788394 -190297138 + AT_rich Low_complexity Low_complexity 1 35 0 635 327 133 35 chr5 12788959 12789620 -190295912 - L2 LINE L2 -8 3305 2563 1972 129 7 0 chr5 12790402 12790705 -190294827 - AluSq SINE Alu 0 305 1 9307 199 22 20 chr5 12791754 12795131 -190290401 - L1MA6 LINE L1 -5 6295 2915 225 323 50 0 chr5 12798086 12798185 -190287347 + MIR SINE MIR 104 207 -55 1726 185 12 0 chr5 12798249 12798595 -190286937 - MLT1B LTR MaLR -40 350 1 281 285 123 37 chr5 12798746 12799121 -190286411 - L1ME4a LINE L1 -65 6056 5650 379 315 27 9 chr5 12799139 12799250 -190286282 + L2 LINE L2 3160 3272 0 1131 178 102 6 chr5 12801221 12801540 -190283992 - MER47B DNA MER2_type 0 418 1 262 361 31 0 chr5 12802398 12802495 -190283037 - MIR SINE MIR -73 135 36 249 299 11 35 chr5 12803164 12803251 -190282281 - MER5B DNA MER1_type -73 105 21 211 313 16 16 chr5 12803194 12803258 -190282274 + MER5A DNA MER1_type 113 176 -13 * 597 219 55 7 chr5 12804550 12804696 -190280836 - MER5A DNA MER1_type -34 155 3 295 160 0 0 chr5 12805592 12805642 -190279890 + MER5A DNA MER1_type 3 52 -137 36 23 0 0 chr5 12805999 12806042 -190279490 + AT_rich Low_complexity Low_complexity 1 43 0 260 311 53 62 chr5 12811167 12811489 -190274043 - L1MEd LINE L1 -5483 636 318 499 168 40 12 chr5 12811960 12812133 -190273399 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 21 36 0 0 chr5 12813478 12813506 -190272026 + AT_rich Low_complexity Low_complexity 1 28 0 611 62 0 0 chr5 12813701 12813781 -190271751 + MADE1 DNA Mariner 1 80 0 526 261 109 32 chr5 12814437 12814840 -190270692 + MLT1J LTR MaLR 1 511 0 343 329 57 14 chr5 12815588 12815728 -190269804 - L2 LINE L2 -1 3312 3167 308 298 56 76 chr5 12816413 12816611 -190268921 - L1ME2 LINE L1 -23 6141 5948 1324 246 39 48 chr5 12816663 12817370 -190268162 - L1ME3A LINE L1 -298 5864 5153 3188 3 0 6 chr5 12817386 12817748 -190267784 - L1PA2 LINE L1 0 6155 5796 390 21 0 0 chr5 12820117 12820164 -190265368 + (CA)n Simple_repeat Simple_repeat 2 48 0 1371 217 37 80 chr5 12824080 12824568 -190260964 - MLT1C LTR MaLR 0 467 1 306 0 0 0 chr5 12824818 12824852 -190260680 + (TG)n Simple_repeat Simple_repeat 1 34 0 1763 103 91 0 chr5 12825330 12825593 -190259939 + AluSx SINE Alu 1 287 -25 472 239 45 30 chr5 12826527 12826661 -190258871 - L2 LINE L2 0 3313 3178 2064 134 0 13 chr5 12826998 12827312 -190258220 - AluSg SINE Alu 0 310 1 181 365 21 21 chr5 12827590 12827686 -190257846 + L2 LINE L2 2589 2684 -630 2811 60 0 0 chr5 12827766 12828119 -190257413 - L1PA8 LINE L1 -3 6169 5817 2517 60 0 19 chr5 12828616 12828931 -190256601 + AluY SINE Alu 1 309 -2 235 102 20 20 chr5 12830122 12830171 -190255361 + (TA)n Simple_repeat Simple_repeat 1 49 0 325 146 8 49 chr5 12830230 12830353 -190255179 + (TA)n Simple_repeat Simple_repeat 1 118 0 396 201 0 50 chr5 12830407 12830586 -190254946 + (TA)n Simple_repeat Simple_repeat 1 170 0 468 172 0 59 chr5 12830610 12831079 -190254453 + (TA)n Simple_repeat Simple_repeat 1 441 0 1591 172 58 3 chr5 12831820 12832111 -190253421 + AluJo SINE Alu 2 308 -4 323 333 32 0 chr5 12833170 12833296 -190252236 + (TATG)n Simple_repeat Simple_repeat 2 131 0 520 250 11 0 chr5 12833298 12833474 -190252058 + (TA)n Simple_repeat Simple_repeat 1 178 0 702 344 4 0 chr5 12833498 12833728 -190251804 - MIR SINE MIR -12 250 20 982 206 54 10 chr5 12833736 12833940 -190251592 - MER20 DNA MER1_type 0 219 7 234 270 119 16 chr5 12833992 12834118 -190251414 - L1ME4a LINE L1 -31 6090 5952 1499 203 3 14 chr5 12834179 12834497 -190251035 - AluJo SINE Alu 0 312 1 21 82 0 0 chr5 12834646 12834695 -190250837 + AT_rich Low_complexity Low_complexity 1 49 0 818 169 19 20 chr5 12835099 12835366 -190250166 + AluJ SINE Alu 7 306 -6 24 32 0 0 chr5 12835405 12835436 -190250096 + AT_rich Low_complexity Low_complexity 1 31 0 261 0 0 0 chr5 12835529 12835558 -190249974 + (TG)n Simple_repeat Simple_repeat 2 30 0 252 59 0 0 chr5 12836454 12836488 -190249044 + (TG)n Simple_repeat Simple_repeat 2 35 0 2595 173 12 12 chr5 12837266 12837532 -190248000 - MSTA LTR MaLR 0 428 160 2440 34 40 7 chr5 12837532 12837830 -190247702 + AluY SINE Alu 1 308 -3 2595 173 12 12 chr5 12837830 12837990 -190247542 - MSTA LTR MaLR -267 161 2 709 250 10 39 chr5 12838699 12838907 -190246625 + MER20 DNA MER1_type 14 215 -4 1913 125 16 13 chr5 12839390 12839695 -190245837 - AluSx SINE Alu -6 306 1 2290 100 0 13 chr5 12840158 12840469 -190245063 + AluSx SINE Alu 1 307 -5 445 331 0 0 chr5 12840731 12840861 -190244671 + GA-rich Low_complexity Low_complexity 2 131 0 207 286 48 36 chr5 12841064 12841148 -190244384 - L2 LINE L2 -20 3252 3168 423 0 0 0 chr5 12841587 12841634 -190243898 + (CA)n Simple_repeat Simple_repeat 2 48 0 23 33 0 0 chr5 12843064 12843094 -190242438 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr5 12843511 12843541 -190241991 + AT_rich Low_complexity Low_complexity 1 30 0 1685 309 68 25 chr5 12843548 12843918 -190241614 + L1MEc LINE L1 297 650 -5746 2209 110 3 10 chr5 12843918 12844226 -190241306 + AluSq SINE Alu 3 308 -5 1685 309 68 25 chr5 12844226 12844863 -190240669 + L1MEc LINE L1 650 1347 -5049 401 285 27 37 chr5 12845025 12845249 -190240283 - L1MCa LINE L1 -894 1893 1511 586 293 86 80 chr5 12845299 12845685 -190239847 + MLT1F1 LTR MaLR 3 390 -152 4880 115 1 0 chr5 12845687 12846348 -190239184 + THE1A-int LTR MaLR 919 1580 0 2557 113 6 8 chr5 12846348 12846702 -190238830 + THE1A LTR MaLR 1 353 -2 420 281 114 33 chr5 12846943 12847153 -190238379 + MIR SINE MIR 6 232 -30 187 356 20 20 chr5 12847567 12847668 -190237864 + MIR3 SINE MIR 65 165 -43 2364 157 3 3 chr5 12847677 12848041 -190237491 + THE1B LTR MaLR 1 364 0 931 276 85 34 chr5 12849235 12849587 -190235945 - MLT1A2 LTR MaLR -4 370 1 22 0 0 0 chr5 12849945 12849967 -190235565 + AT_rich Low_complexity Low_complexity 1 22 0 2352 110 0 0 chr5 12850632 12850942 -190234590 - AluSx SINE Alu -2 310 1 226 228 98 43 chr5 12851349 12851441 -190234091 + MIR SINE MIR 94 190 -72 264 300 31 31 chr5 12853687 12853817 -190231715 - MER5A DNA MER1_type -6 183 54 27 29 0 0 chr5 12853938 12853972 -190231560 + AT_rich Low_complexity Low_complexity 1 34 0 210 37 0 0 chr5 12855018 12855045 -190230487 + (CA)n Simple_repeat Simple_repeat 2 28 0 294 182 58 0 chr5 12855049 12855203 -190230329 + (TA)n Simple_repeat Simple_repeat 2 164 0 1680 175 77 72 chr5 12855369 12855757 -190229775 - MLT1B LTR MaLR 0 390 1 200 91 0 30 chr5 12856910 12856943 -190228589 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 2069 144 7 0 chr5 12857566 12857898 -190227634 + AluSg SINE Alu 1 334 0 1683 175 0 0 chr5 12857898 12858172 -190227360 + MER7A DNA MER2_type 65 336 -10 608 214 27 86 chr5 12859352 12859572 -190225960 + MIR SINE MIR 32 238 -24 224 174 0 22 chr5 12859586 12859632 -190225900 + (TTA)n Simple_repeat Simple_repeat 1 45 0 2094 131 3 0 chr5 12861153 12861450 -190224082 + AluSq SINE Alu 1 298 -15 2235 88 0 33 chr5 12864943 12865248 -190220284 - AluY SINE Alu -16 295 1 1402 127 0 0 chr5 12865290 12865502 -190220030 + AluSg/x SINE Alu 98 309 -3 915 104 7 30 chr5 12865651 12865786 -190219746 - L1PB1 LINE L1 -4 6147 6016 2337 163 5 21 chr5 12866594 12866975 -190218557 - THE1C LTR MaLR 0 375 1 757 231 14 53 chr5 12867455 12867663 -190217869 - MER20 DNA MER1_type -18 201 2 719 262 99 26 chr5 12867691 12867924 -190217608 - MIR SINE MIR -16 246 1 686 311 101 15 chr5 12868324 12868904 -190216628 + L1MC4 LINE L1 6336 7062 -980 2182 128 0 10 chr5 12868988 12869301 -190216231 - AluSx SINE Alu -2 310 1 381 271 62 8 chr5 12869587 12869716 -190215816 + L1MC4a LINE L1 7275 7410 -398 334 243 7 30 chr5 12871070 12871376 -190214156 + GA-rich Low_complexity Low_complexity 1 298 0 29 47 0 0 chr5 12871716 12871759 -190213773 + AT_rich Low_complexity Low_complexity 1 43 0 1874 142 35 0 chr5 12873790 12874079 -190211453 + AluSq SINE Alu 1 299 -14 922 281 29 32 chr5 12874616 12874993 -190210539 + L1MC4a LINE L1 6542 6917 -891 3582 150 47 66 chr5 12875794 12876381 -190209151 - MER50 LTR ERV1 -23 711 139 1994 129 37 0 chr5 12876381 12876676 -190208856 - AluSx SINE Alu -6 306 1 3582 150 47 66 chr5 12876676 12876813 -190208719 - MER50 LTR ERV1 -595 139 1 3582 166 33 24 chr5 12877219 12878151 -190207381 + L1MA4 LINE L1 4647 5606 -694 1994 138 3 0 chr5 12878151 12878440 -190207092 + AluSp SINE Alu 2 291 -22 3582 166 33 24 chr5 12878440 12878781 -190206751 + L1MA4 LINE L1 5606 5943 -357 2207 128 0 0 chr5 12879618 12879915 -190205617 + AluSx SINE Alu 3 299 -13 1324 217 92 73 chr5 12880054 12880338 -190205194 + MER77 LTR ERV1 180 522 -155 1727 149 34 3 chr5 12880338 12880634 -190204898 - AluSx SINE Alu -3 309 5 1324 217 92 73 chr5 12880634 12880789 -190204743 + MER77 LTR ERV1 522 673 -4 1134 261 157 76 chr5 12880901 12882209 -190203323 - HAL1 LINE L1 -1 2506 1093 23 86 0 0 chr5 12882235 12882293 -190203239 + AT_rich Low_complexity Low_complexity 1 58 0 571 277 158 55 chr5 12882372 12882896 -190202636 - HAL1 LINE L1 -1433 1074 497 234 229 330 0 chr5 12883002 12883111 -190202421 - HAL1 LINE L1 -2341 166 22 192 77 0 0 chr5 12884264 12884290 -190201242 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2480 60 13 3 chr5 12888090 12888390 -190197142 - AluY SINE Alu -8 303 1 631 132 88 0 chr5 12888787 12888901 -190196631 + MSTB LTR MaLR 1 124 -302 32 57 0 0 chr5 12892459 12892512 -190193020 + AT_rich Low_complexity Low_complexity 1 53 0 414 0 0 0 chr5 12892551 12892597 -190192935 + (TG)n Simple_repeat Simple_repeat 2 47 0 1894 169 0 0 chr5 12894453 12894749 -190190783 - AluSx SINE Alu -16 296 1 1654 236 97 39 chr5 12896378 12896517 -190189015 + MLT1F1 LTR MaLR 1 131 -436 1707 196 58 3 chr5 12896517 12896863 -190188669 + MLT1A1 LTR MaLR 1 365 0 1654 236 97 39 chr5 12896863 12897258 -190188274 + MLT1F1 LTR MaLR 131 566 -1 827 329 19 3 chr5 12897268 12897590 -190187942 + L1ME3A LINE L1 5655 5981 -189 743 263 56 5 chr5 12897659 12897872 -190187660 - MER58A DNA MER1_type 0 224 1 281 342 96 33 chr5 12899084 12899482 -190186050 + HsTC2 DNA Tc2 469 891 -1007 197 0 71 0 chr5 12900616 12900644 -190184888 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 22 35 0 0 chr5 12900972 12901001 -190184531 + AT_rich Low_complexity Low_complexity 1 29 0 677 149 11 33 chr5 12901027 12901208 -190184324 + GA-rich Low_complexity Low_complexity 2 178 0 330 93 13 53 chr5 12901208 12901283 -190184249 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 195 184 0 0 chr5 12902569 12902607 -190182925 + CT-rich Low_complexity Low_complexity 2 39 0 345 197 0 0 chr5 12903053 12903129 -190182403 + GA-rich Low_complexity Low_complexity 3 78 0 21 0 0 0 chr5 12904914 12904935 -190180597 + AT_rich Low_complexity Low_complexity 1 21 0 2924 194 28 36 chr5 12905543 12905706 -190179826 + L1MC3 LINE L1 7050 7213 -572 2150 91 13 39 chr5 12905706 12906014 -190179518 - AluY SINE Alu -11 300 1 2924 194 28 36 chr5 12906014 12906464 -190179068 + L1MC3 LINE L1 7213 7658 -127 791 146 0 6 chr5 12907672 12907836 -190177696 + (TG)n Simple_repeat Simple_repeat 2 164 0 249 33 0 0 chr5 12911277 12911307 -190174225 + (T)n Simple_repeat Simple_repeat 1 30 0 2463 53 0 7 chr5 12913942 12914244 -190171288 - AluY SINE Alu -11 300 1 315 0 0 0 chr5 12914760 12914795 -190170737 + (TG)n Simple_repeat Simple_repeat 2 36 0 278 267 0 0 chr5 12914919 12914979 -190170553 + MER63 DNA MER1_type 689 748 -313 229 188 21 0 chr5 12914982 12915030 -190170502 + MER63 DNA MER1_type 978 1026 -35 2624 199 25 12 chr5 12915224 12915712 -190169820 - MER21B LTR ERV1 -369 494 1 189 0 0 0 chr5 12916391 12916412 -190169120 + (CA)n Simple_repeat Simple_repeat 1 21 0 21 36 0 0 chr5 13018779 13018807 -190066725 + AT_rich Low_complexity Low_complexity 1 28 0 818 220 39 17 chr5 13019011 13019243 -190066289 - L1MB3 LINE L1 -7 6176 5940 2395 88 0 0 chr5 13019245 13019540 -190065992 + AluSg SINE Alu 1 295 -15 2179 105 52 50 chr5 13019540 13019903 -190065629 - THE1B LTR MaLR 0 364 1 230 190 0 17 chr5 13021155 13021213 -190064319 + (TA)n Simple_repeat Simple_repeat 1 57 0 2078 117 0 0 chr5 13021686 13021967 -190063565 + AluSc SINE Alu 5 285 -24 189 0 0 0 chr5 13021971 13021992 -190063540 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 1869 31 0 0 chr5 13022112 13022337 -190063195 - L1PA4 LINE L1 -1 6154 5930 228 100 0 0 chr5 13022461 13022501 -190063031 + (TTTTTG)n Simple_repeat Simple_repeat 5 44 0 234 0 0 0 chr5 13023246 13023272 -190062260 + (CA)n Simple_repeat Simple_repeat 2 27 0 768 201 24 6 chr5 13024142 13024306 -190061226 + FRAM SINE Alu 2 168 -8 2569 115 5 3 chr5 13024366 13024750 -190060782 - L1PA10 LINE L1 -15 6153 5769 580 239 86 24 chr5 13024759 13024989 -190060543 - L1MC4 LINE L1 -1020 7022 6689 2472 39 0 36 chr5 13025681 13026016 -190059516 - L1PA3 LINE L1 0 6155 5833 6643 62 26 2 chr5 13026176 13027800 -190057732 + L1PA8 LINE L1 4509 6166 -6 204 273 18 18 chr5 13027891 13027946 -190057586 + L2 LINE L2 3259 3313 0 379 169 0 0 chr5 13028171 13028236 -190057296 + MER89 LTR ERV1 7 71 -488 1453 223 29 14 chr5 13028244 13028594 -190056938 + MER89 LTR ERV1 185 539 -20 690 206 31 10 chr5 13028596 13028790 -190056742 + MLT1A1 LTR MaLR 1 198 -167 821 315 108 11 chr5 13029174 13029293 -190056239 - L2 LINE L2 -4 3309 3203 2503 197 14 18 chr5 13029293 13029800 -190055732 + MLT1D LTR MaLR 1 505 0 821 315 108 11 chr5 13029800 13030134 -190055398 - L2 LINE L2 -110 3203 2812 450 302 17 22 chr5 13030143 13030322 -190055210 - MER5B DNA MER1_type 0 178 1 402 338 45 13 chr5 13030322 13030349 -190055183 - L2 LINE L2 -503 2811 2787 198 0 0 0 chr5 13030349 13030371 -190055161 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 402 338 45 13 chr5 13030371 13030486 -190055046 - L2 LINE L2 -527 2787 2664 360 304 98 47 chr5 13030487 13030701 -190054831 - L2 LINE L2 -1098 2216 1992 830 309 53 25 chr5 13030729 13031127 -190054405 - LTR16A LTR ERVL -7 443 35 226 207 0 107 chr5 13031690 13031840 -190053692 + A-rich Low_complexity Low_complexity 3 136 0 2972 265 85 25 chr5 13031989 13034470 -190051062 + L1MC/D LINE L1 2663 5359 -883 234 0 0 0 chr5 13034470 13034496 -190051036 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2972 265 85 25 chr5 13034496 13034763 -190050769 + L1MC/D LINE L1 5359 5608 -634 1645 180 9 27 chr5 13034926 13035259 -190050273 - L1 LINE L1 -1977 4169 3843 1831 128 3 48 chr5 13035635 13035925 -190049607 - AluSx SINE Alu -35 277 1 24 67 0 0 chr5 13035973 13036018 -190049514 + AT_rich Low_complexity Low_complexity 1 45 0 10475 173 17 10 chr5 13036301 13038379 -190047153 + L1P LINE L1 1550 3642 -2504 648 319 63 77 chr5 13038774 13039550 -190045982 - L2 LINE L2 -128 3185 2399 401 330 135 0 chr5 13039873 13040060 -190045472 + MIR SINE MIR 40 249 -13 449 325 65 50 chr5 13040116 13040166 -190045366 - MLT1K LTR MaLR -254 334 286 1962 154 103 10 chr5 13040166 13040556 -190044976 - MSTA LTR MaLR -2 426 1 449 325 65 50 chr5 13040556 13040828 -190044704 - MLT1K LTR MaLR -302 286 7 3106 161 15 22 chr5 13041477 13042073 -190043459 - MER39B LTR ERV1 -5 648 57 750 82 0 0 chr5 13042173 13042270 -190043262 + L1PA10 LINE L1 6056 6152 -16 633 178 0 0 chr5 13042344 13042451 -190043081 + 7SLRNA srpRNA srpRNA 213 319 -1 21 36 0 0 chr5 13042525 13042553 -190042979 + AT_rich Low_complexity Low_complexity 1 28 0 362 301 44 56 chr5 13043704 13043935 -190041597 - MIR SINE MIR 0 262 36 1779 208 208 4 chr5 13044438 13044905 -190040627 - MLT1F1 LTR MaLR -1 566 5 346 333 23 34 chr5 13045569 13045746 -190039786 + HAL1 LINE L1 1116 1290 -1217 613 332 76 4 chr5 13046129 13046367 -190039165 + MIR SINE MIR 8 262 0 1142 145 6 0 chr5 13047371 13047543 -190037989 - LTR8 LTR ERV1 -9 682 510 7509 34 6 7 chr5 13047546 13049197 -190036335 - L1PA3 LINE L1 -3 6152 4505 8443 163 7 7 chr5 13049343 13050036 -190035496 + L1PA11 LINE L1 3644 4336 -1838 2826 7 0 0 chr5 13050036 13050342 -190035190 + AluY SINE Alu 1 306 -5 8443 163 7 7 chr5 13050342 13052191 -190033341 + L1PA11 LINE L1 4335 6172 -2 228 100 0 0 chr5 13053857 13053897 -190031635 + (TA)n Simple_repeat Simple_repeat 2 41 0 192 40 0 0 chr5 13053896 13053921 -190031611 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 3357 197 65 17 chr5 13054551 13055334 -190030198 + L1MB8 LINE L1 5352 6172 -6 217 354 42 0 chr5 13055592 13055688 -190029844 + L2 LINE L2 3173 3272 0 234 91 0 0 chr5 13056898 13056931 -190028601 + (TG)n Simple_repeat Simple_repeat 1 33 0 22 35 0 0 chr5 13057270 13057299 -190028233 + AT_rich Low_complexity Low_complexity 1 29 0 605 164 98 0 chr5 13058393 13058515 -190027017 - L1MB8 LINE L1 -5 6173 6040 472 161 120 16 chr5 13058610 13058802 -190026730 - L1MB8 LINE L1 -170 6008 5797 799 188 56 64 chr5 13059401 13059635 -190025897 - MER96B DNA MER1_type? -185 232 1 814 154 19 0 chr5 13060178 13060340 -190025192 + (TAGA)n Simple_repeat Simple_repeat 4 168 0 193 303 43 99 chr5 13061119 13061281 -190024251 + L2 LINE L2 3115 3267 -5 4862 91 1 41 chr5 13061518 13062299 -190023233 + L1P LINE L1 2 751 -5395 233 219 62 0 chr5 13063085 13063149 -190022383 + L3 LINE CR1 792 859 -718 355 289 243 14 chr5 13063317 13063535 -190021997 + L3 LINE CR1 967 1234 -343 2131 49 0 0 chr5 13063593 13063839 -190021693 + AluY SINE Alu 55 300 -11 315 313 23 47 chr5 13063844 13063972 -190021560 + L3 LINE CR1 1383 1507 -70 7423 101 7 19 chr5 13065096 13066181 -190019351 + MER11C LTR ERVK 1 1071 0 254 302 16 0 chr5 13066253 13066316 -190019216 - MIR SINE MIR -104 104 41 954 187 34 10 chr5 13067398 13067607 -190017925 + MER61C LTR ERV1 216 429 -5 279 0 0 0 chr5 13067647 13067678 -190017854 + (CA)n Simple_repeat Simple_repeat 1 31 0 202 281 52 118 chr5 13068279 13068414 -190017118 - MIR3 SINE MIR -45 163 38 2256 105 13 7 chr5 13068550 13068855 -190016677 + AluSg SINE Alu 3 309 -1 326 315 124 41 chr5 13069148 13069415 -190016117 + L2 LINE L2 2929 3217 -96 620 334 128 17 chr5 13069487 13069704 -190015828 - L2 LINE L2 -25 3288 3097 1633 182 0 47 chr5 13069704 13070022 -190015510 + AluJo SINE Alu 1 303 -9 620 334 128 17 chr5 13070022 13070440 -190015092 - L2 LINE L2 -216 3097 2591 295 138 313 25 chr5 13070444 13070524 -190015008 + MER51A LTR ERV1 1 103 -531 * 2280 111 2 34 chr5 13070518 13070865 -190014667 + MER51B LTR ERV1 50 377 0 262 291 0 0 chr5 13070874 13070953 -190014579 - L2 LINE L2 -741 2573 2495 244 184 13 92 chr5 13070961 13071037 -190014495 - L1MA10 LINE L1 -552 5782 5713 2395 158 59 20 chr5 13071038 13071544 -190013988 + L1MA10 LINE L1 5806 6331 -3 1377 303 141 11 chr5 13071595 13072331 -190013201 - L2 LINE L2 -865 2449 1618 2647 124 11 49 chr5 13072546 13072991 -190012541 - MSTA LTR MaLR 0 428 1 1872 134 16 26 chr5 13075857 13076163 -190009369 + AluJb SINE Alu 3 305 -7 2128 92 0 3 chr5 13076355 13076659 -190008873 - AluY SINE Alu -8 303 1 487 163 43 0 chr5 13076922 13077014 -190008518 + L1PB3 LINE L1 5985 6080 -74 40 17 0 17 chr5 13077126 13077156 -190008376 + AT_rich Low_complexity Low_complexity 1 31 -26 1905 107 3 75 chr5 13077156 13077475 -190008057 - AluSx SINE Alu -16 296 1 40 17 0 17 chr5 13077475 13077502 -190008030 + AT_rich Low_complexity Low_complexity 31 57 0 1522 57 43 19 chr5 13077510 13077719 -190007813 + AluSq SINE Alu 79 292 -21 329 281 57 62 chr5 13078630 13078840 -190006692 + MIR SINE MIR 11 219 -43 288 317 14 28 chr5 13078935 13079080 -190006452 + MIR SINE MIR 85 227 -35 30027 32 13 0 chr5 13079971 13083724 -190001808 - L1P LINE L1 -733 5422 1630 572 106 0 62 chr5 13083724 13083837 -190001695 - LTR8 LTR ERV1 -176 515 410 * 887 138 0 22 chr5 13083831 13083969 -190001563 - LTR8 LTR ERV1 -556 135 1 359 129 38 53 chr5 13084163 13084286 -190001246 + MER61B LTR ERV1 2 216 -209 1110 88 0 0 chr5 13084412 13084549 -190000983 - AluSq/x SINE Alu -176 137 1 414 225 26 89 chr5 13084555 13084746 -190000786 - L1MC5 LINE L1 -180 7781 7603 301 359 21 7 chr5 13084773 13084918 -190000614 - L1M4 LINE L1 -996 5150 5004 230 208 125 0 chr5 13085090 13085162 -190000370 + L2 LINE L2 1135 1215 -2099 1652 246 107 66 chr5 13085171 13085573 -189999959 + L2 LINE L2 1326 1710 -1604 2200 113 3 0 chr5 13085573 13085873 -189999659 - AluSq SINE Alu -12 301 1 1652 246 107 66 chr5 13085873 13085964 -189999568 + L2 LINE L2 1710 1796 -1518 2124 133 3 0 chr5 13085964 13086257 -189999275 - AluSx SINE Alu -18 294 1 1652 246 107 66 chr5 13086257 13086626 -189998906 + L2 LINE L2 1796 2224 -1090 1759 118 0 0 chr5 13086634 13086872 -189998660 + AluSx SINE Alu 56 293 -19 1580 219 6 18 chr5 13086910 13087239 -189998293 + MER82 DNA MER2_type 37 361 -292 2481 61 0 19 chr5 13087916 13088227 -189997305 + AluY SINE Alu 1 305 -6 569 249 142 20 chr5 13088410 13088607 -189996925 + MIR SINE MIR 3 223 -39 968 180 135 61 chr5 13088616 13088683 -189996849 - MLT1D LTR MaLR -2 503 442 2329 94 3 3 chr5 13088683 13088990 -189996542 + AluSp SINE Alu 1 307 -6 968 180 135 61 chr5 13088990 13089280 -189996252 - MLT1D LTR MaLR -63 442 95 2866 112 30 112 chr5 13089705 13090278 -189995254 - Tigger1 DNA MER2_type 0 2418 1893 1342 177 27 10 chr5 13090792 13091209 -189994323 + LTR54 LTR ERV1 1 510 0 288 0 0 0 chr5 13091478 13091510 -189994022 + (TC)n Simple_repeat Simple_repeat 2 33 0 333 0 0 0 chr5 13094027 13094064 -189991468 + (TG)n Simple_repeat Simple_repeat 2 38 0 586 193 56 43 chr5 13095356 13095517 -189990015 - LTR23 LTR ERV1 0 437 275 1205 167 5 33 chr5 13095868 13095953 -189989579 - MER3 DNA MER1_type 0 209 123 1884 115 0 0 chr5 13095953 13096197 -189989335 + AluSg SINE Alu 52 295 -15 1205 167 5 33 chr5 13096197 13096326 -189989206 - MER3 DNA MER1_type -86 123 1 458 181 96 50 chr5 13097040 13097272 -189988260 - LTR48 LTR ERV1 -48 739 300 420 141 94 0 chr5 13097290 13097375 -189988157 - LTR49 LTR ERV1 -349 246 154 3835 206 26 30 chr5 13097494 13098924 -189986608 + L1MA9 LINE L1 4361 5788 -524 241 191 16 48 chr5 13098947 13099010 -189986522 - L1M2 LINE L1 -512 5788 5728 2311 196 46 24 chr5 13099034 13099331 -189986201 + L1MA9 LINE L1 5776 6091 -221 1975 81 0 8 chr5 13099331 13099629 -189985903 - AluY SINE Alu 0 333 38 2311 196 46 24 chr5 13099629 13099831 -189985701 + L1MA9 LINE L1 6091 6287 -25 697 295 33 26 chr5 13099865 13100136 -189985396 + MLT1K LTR MaLR 307 579 -9 331 241 35 23 chr5 13101747 13101834 -189983698 - L2 LINE L2 -16 3297 3210 354 236 50 36 chr5 13101882 13102022 -189983510 + L1MC4 LINE L1 7900 8041 -1 2481 46 19 10 chr5 13102336 13102643 -189982889 + AluY SINE Alu 1 310 -1 207 0 0 0 chr5 13102735 13102758 -189982774 + (A)n Simple_repeat Simple_repeat 1 23 0 279 0 0 0 chr5 13103180 13103211 -189982321 + (TTA)n Simple_repeat Simple_repeat 3 33 0 306 30 0 0 chr5 13103211 13103244 -189982288 - L1PA6 LINE L1 -18 6136 6104 1457 229 66 92 chr5 13104140 13104704 -189980828 - MLT1E2 LTR MaLR -2 624 76 302 281 118 30 chr5 13104611 13104746 -189980786 - MLT2C1 LTR ERVL -199 198 52 * 225 154 0 0 chr5 13105042 13105081 -189980451 + (TA)n Simple_repeat Simple_repeat 2 40 0 2227 115 0 16 chr5 13105081 13105394 -189980138 - AluSx SINE Alu -4 308 1 497 273 32 7 chr5 13105838 13105992 -189979540 + LTR67 LTR ERVL 400 557 0 1441 179 3 102 chr5 13106350 13106674 -189978858 + AluJo SINE Alu 1 292 -20 1301 136 19 0 chr5 13106788 13107002 -189978530 + L1MA4 LINE L1 6077 6294 -6 297 0 0 0 chr5 13107205 13107238 -189978294 + (TG)n Simple_repeat Simple_repeat 1 33 0 1832 132 13 55 chr5 13107469 13107780 -189977752 - AluSq SINE Alu -14 299 2 2308 100 3 0 chr5 13107793 13108094 -189977438 - AluSc SINE Alu -7 302 1 2065 136 3 7 chr5 13108122 13108432 -189977100 - AluSg1 SINE Alu 0 309 1 235 311 41 33 chr5 13108511 13108633 -189976899 + LTR67 LTR ERVL 421 543 -14 376 295 54 27 chr5 13110209 13110358 -189975174 - MIR SINE MIR -97 165 13 2228 105 0 10 chr5 13111337 13111632 -189973900 + AluSg SINE Alu 3 294 -16 2375 75 0 31 chr5 13111634 13111955 -189973577 + AluY SINE Alu 1 311 0 369 0 0 0 chr5 13111965 13112006 -189973526 + (TG)n Simple_repeat Simple_repeat 1 41 0 216 0 0 0 chr5 13112005 13112029 -189973503 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 601 264 37 12 chr5 13112404 13112567 -189972965 - MER5A DNA MER1_type -7 182 16 317 167 56 158 chr5 13112619 13112834 -189972698 + L1M4 LINE L1 4969 5161 -985 1900 109 21 0 chr5 13112835 13113118 -189972414 - AluSq SINE Alu -15 298 10 295 271 21 49 chr5 13113442 13113586 -189971946 + C-rich Low_complexity Low_complexity 3 142 0 273 302 9 35 chr5 13114903 13115019 -189970513 + C-rich Low_complexity Low_complexity 3 115 0 552 168 84 8 chr5 13115280 13115411 -189970121 - LTR37A LTR ERV1 0 426 286 2215 112 10 0 chr5 13115513 13115817 -189969715 + AluSx SINE Alu 5 311 -1 426 190 229 45 chr5 13116415 13116594 -189968938 + LTR37A LTR ERV1 8 219 -207 708 162 0 0 chr5 13116609 13116708 -189968824 - AluJ/FLAM SINE Alu -212 100 2 3291 172 54 72 chr5 13116755 13117006 -189968526 - MER72 LTR ERV1 0 722 468 1592 172 0 34 chr5 13117006 13117302 -189968230 - AluJo SINE Alu -26 286 1 3291 172 54 72 chr5 13117302 13117771 -189967761 - MER72 LTR ERV1 -254 468 15 330 277 27 20 chr5 13117797 13117945 -189967587 + LTR37A LTR ERV1 278 426 0 850 110 16 8 chr5 13117956 13118083 -189967449 - MER4D LTR ERV1 0 903 776 1067 230 103 75 chr5 13118183 13118486 -189967046 - MLT1E2 LTR MaLR -77 549 224 1947 131 30 0 chr5 13118486 13118784 -189966748 - AluSx SINE Alu -5 307 1 1067 230 103 75 chr5 13118784 13119015 -189966517 - MLT1E2 LTR MaLR -402 224 1 419 136 0 0 chr5 13119302 13119361 -189966171 - AluJo SINE Alu -16 296 238 3761 133 49 30 chr5 13119361 13119917 -189965615 + MER50 LTR ERV1 1 574 -160 2256 104 0 7 chr5 13119917 13120225 -189965307 - AluSx SINE Alu -6 306 1 3761 133 49 30 chr5 13120225 13120366 -189965166 + MER50 LTR ERV1 574 711 -23 1357 168 16 29 chr5 13120367 13120611 -189964921 - AluJo SINE Alu -71 241 1 1117 158 254 7 chr5 13120626 13120905 -189964627 - Charlie1 DNA MER1_type -369 2392 2045 1602 168 28 7 chr5 13120906 13121191 -189964341 - AluJo SINE Alu -21 291 1 765 222 81 0 chr5 13121217 13121402 -189964130 - Charlie1a DNA MER1_type -1251 204 5 1256 173 140 0 chr5 13121808 13122080 -189963452 - MER2 DNA MER2_type -26 319 10 349 248 153 38 chr5 13122909 13123066 -189962466 + MIR SINE MIR 1 175 -87 2061 107 35 10 chr5 13124420 13124709 -189960823 - AluSq SINE Alu -17 296 1 863 111 8 0 chr5 13125029 13125146 -189960386 + MLT1B LTR MaLR 273 390 0 * 2111 157 11 11 chr5 13125146 13125494 -189960038 - MLT2C1 LTR ERVL -49 348 1 635 190 129 95 chr5 13125826 13126058 -189959474 - MIR SINE MIR -13 249 10 1969 156 3 0 chr5 13126547 13126842 -189958690 - AluJb SINE Alu -16 296 1 813 159 0 57 chr5 13127301 13127458 -189958074 + AluJo SINE Alu 11 158 -154 1930 116 0 48 chr5 13127486 13127797 -189957735 + AluSx SINE Alu 1 296 -16 2023 138 7 0 chr5 13128184 13128480 -189957052 - AluSx SINE Alu -12 300 3 709 215 99 25 chr5 13128551 13128802 -189956730 + MLT1C LTR MaLR 39 344 -123 2142 117 117 30 chr5 13128802 13129154 -189956378 + MSTA LTR MaLR 1 392 -36 2254 107 0 29 chr5 13129154 13129463 -189956069 - AluSq SINE Alu -13 300 1 2142 117 117 30 chr5 13129463 13129504 -189956028 + MSTA LTR MaLR 392 428 0 709 215 99 25 chr5 13129504 13129638 -189955894 + MLT1C LTR MaLR 344 467 0 2059 110 0 37 chr5 13129710 13130009 -189955523 + AluSx SINE Alu 1 288 -24 4004 166 11 60 chr5 13130037 13130797 -189954735 + MER72 LTR ERV1 1 722 0 365 223 93 39 chr5 13131622 13131817 -189953715 + L1MC4a LINE L1 7193 7414 -394 275 156 0 0 chr5 13131817 13131862 -189953670 - MLT1F1 LTR MaLR 0 567 523 813 199 76 0 chr5 13131889 13132060 -189953472 - MLT1F1 LTR MaLR -362 205 22 1678 126 17 55 chr5 13132060 13132353 -189953179 + AluSx SINE Alu 1 282 -30 240 232 14 14 chr5 13132354 13132423 -189953109 + GA-rich Low_complexity Low_complexity 1 69 0 530 176 15 15 chr5 13132619 13132755 -189952777 + GA-rich Low_complexity Low_complexity 1 136 0 930 106 12 12 chr5 13132761 13132921 -189952611 + (GGAA)n Simple_repeat Simple_repeat 3 162 0 2397 82 0 25 chr5 13133012 13133331 -189952201 + AluSx SINE Alu 2 312 0 1877 183 64 43 chr5 13133332 13133583 -189951949 - MER74A LTR ERVL -111 447 203 1964 146 58 18 chr5 13133583 13133913 -189951619 + MER61A LTR ERV1 1 343 0 1877 183 64 43 chr5 13133913 13134079 -189951453 - MER74A LTR ERVL -355 203 18 2246 131 3 6 chr5 13134079 13134392 -189951140 + AluSx SINE Alu 1 312 0 1877 183 64 43 chr5 13134392 13134411 -189951121 - MER74A LTR ERVL -540 18 1 1276 213 88 29 chr5 13134411 13134795 -189950737 - MLT1F1 LTR MaLR -41 526 124 2338 149 81 2 chr5 13134795 13135192 -189950340 - MSTC LTR MaLR 0 428 1 1276 213 88 29 chr5 13135192 13135231 -189950301 - MLT1F1 LTR MaLR -443 124 89 454 241 121 7 chr5 13135335 13135476 -189950056 - MSTC-int LTR MaLR 0 1371 1215 1701 142 0 73 chr5 13135690 13135992 -189949540 + AluJb SINE Alu 1 280 -32 303 341 121 0 chr5 13136022 13136195 -189949337 - MSTC-int LTR MaLR -486 885 692 937 127 20 76 chr5 13136434 13136631 -189948901 + MSTB LTR MaLR 1 186 -240 1430 179 12 4 chr5 13136648 13136894 -189948638 + AluJb SINE Alu 22 269 -43 1515 160 8 34 chr5 13136903 13137165 -189948367 - AluJo SINE Alu -57 255 1 276 125 0 0 chr5 13137165 13137205 -189948327 + MSTA LTR MaLR 389 428 0 622 292 68 13 chr5 13137205 13137513 -189948019 - MSTC-int LTR MaLR -770 601 277 850 196 37 0 chr5 13137528 13137691 -189947841 + FRAM SINE Alu 1 169 -7 259 239 146 15 chr5 13137701 13137831 -189947701 - MSTC-int LTR MaLR -1221 150 4 993 259 105 51 chr5 13137843 13138154 -189947378 - MLT1F LTR MaLR 0 542 249 234 81 0 0 chr5 13138154 13138191 -189947341 + (CA)n Simple_repeat Simple_repeat 2 38 0 993 259 105 51 chr5 13138191 13138267 -189947265 - MLT1F LTR MaLR -293 249 179 2262 104 50 50 chr5 13138267 13138365 -189947167 + THE1B LTR MaLR 1 98 -266 2274 112 0 3 chr5 13138365 13138661 -189946871 - AluSq SINE Alu -18 295 1 2262 104 50 50 chr5 13138661 13138926 -189946606 + THE1B LTR MaLR 97 364 0 993 259 105 51 chr5 13138926 13139051 -189946481 - MLT1F LTR MaLR -363 179 1 1182 134 31 76 chr5 13139980 13140203 -189945329 + AluJb SINE Alu 86 298 -14 1310 131 149 62 chr5 13140408 13140446 -189945086 - MSTC LTR MaLR 0 365 332 2123 117 0 0 chr5 13140446 13140762 -189944770 + AluSx SINE Alu 1 316 0 1310 131 149 62 chr5 13140762 13141058 -189944474 - MSTC LTR MaLR -33 332 1 454 208 10 10 chr5 13141100 13141196 -189944336 + MLT2F LTR ERVL 1 96 -567 2332 105 0 22 chr5 13141323 13141638 -189943894 + AluSx SINE Alu 1 308 -4 913 162 7 19 chr5 13141643 13141835 -189943697 + FRAM SINE Alu 1 176 0 313 207 50 83 chr5 13142080 13142201 -189943331 + L1 LINE L1 3083 3199 -2947 654 179 87 22 chr5 13142362 13142546 -189942986 - L1PB3 LINE L1 -274 5880 5685 250 232 295 11 chr5 13143572 13143667 -189941865 + MIR SINE MIR 32 153 -55 2255 125 0 3 chr5 13143747 13144052 -189941480 + AluJb SINE Alu 9 312 0 1905 169 3 13 chr5 13144140 13144271 -189941261 + AluJo SINE Alu 1 132 -180 2296 105 7 0 chr5 13144271 13144567 -189940965 + AluSg SINE Alu 1 298 -12 1905 169 3 13 chr5 13144567 13144749 -189940783 + AluJo SINE Alu 132 311 -1 2193 144 34 3 chr5 13144953 13145308 -189940224 - MER47A DNA MER2_type 0 366 1 1911 120 53 3 chr5 13145959 13146242 -189939290 - AluSx SINE Alu -15 297 1 2404 84 0 3 chr5 13146630 13146926 -189938606 - AluSg SINE Alu -13 297 3 1962 152 13 3 chr5 13146934 13147237 -189938295 - AluJb SINE Alu -6 306 1 2335 108 0 0 chr5 13147554 13147860 -189937672 - AluSx SINE Alu -6 306 1 1669 184 3 3 chr5 13148220 13148502 -189937030 + AluJo SINE Alu 1 282 -30 2138 112 0 7 chr5 13148668 13148964 -189936568 + AluSx SINE Alu 1 294 -18 2022 146 0 10 chr5 13149505 13149830 -189935702 + AluSx SINE Alu 1 312 0 2366 84 7 3 chr5 13149904 13150200 -189935332 + AluSx SINE Alu 1 297 -15 4625 161 48 9 chr5 13150701 13151563 -189933969 + MER54A LTR ERVL 1 895 -6 231 217 0 0 chr5 13151567 13151613 -189933919 + MIR SINE MIR 102 147 -115 2262 183 56 41 chr5 13152096 13152351 -189933181 - Charlie5 DNA MER1_type -30 2594 2344 1951 128 13 13 chr5 13152351 13152655 -189932877 + AluSx SINE Alu 1 304 -8 2262 183 56 41 chr5 13152655 13153010 -189932522 - Charlie5 DNA MER1_type -280 2344 1975 2304 99 10 0 chr5 13153016 13153318 -189932214 - AluSx SINE Alu -7 305 1 337 261 45 9 chr5 13153320 13153431 -189932101 - Charlie5 DNA MER1_type -2464 148 34 410 180 72 18 chr5 13153533 13153644 -189931888 + LTR34 LTR ERV1 1 117 -547 926 215 96 96 chr5 13153722 13154190 -189931342 + LTR34 LTR ERV1 136 695 -4 2791 103 0 8 chr5 13154722 13155100 -189930432 + THE1C LTR MaLR 1 375 0 263 238 60 24 chr5 13155286 13155370 -189930162 - MLT1L LTR MaLR -2 613 527 1651 135 31 0 chr5 13155963 13156223 -189929309 + MER50 LTR ERV1 1 268 -466 704 78 0 0 chr5 13156567 13156657 -189928875 + THE1C LTR MaLR 1 90 -285 1337 171 89 0 chr5 13156668 13156926 -189928606 + MER50 LTR ERV1 431 711 -23 1859 173 0 16 chr5 13157399 13157711 -189927821 - AluJb SINE Alu -5 307 1 307 342 45 42 chr5 13157812 13158052 -189927480 - MLT1I LTR MaLR -52 357 114 3173 122 75 58 chr5 13158052 13158219 -189927313 - MER39B LTR ERV1 -1 652 489 1764 155 30 0 chr5 13158219 13158490 -189927042 - AluJo SINE Alu -22 290 12 3173 122 75 58 chr5 13158490 13158959 -189926573 - MER39B LTR ERV1 -164 489 5 307 342 45 42 chr5 13158959 13159031 -189926501 - MLT1I LTR MaLR -295 114 44 660 170 78 7 chr5 13159180 13159321 -189926211 - MLT1E2 LTR MaLR -7 619 469 338 224 0 0 chr5 13159456 13159514 -189926018 - AluJ/FLAM SINE Alu -244 58 1 352 188 24 71 chr5 13160413 13160498 -189925034 + L2 LINE L2 3229 3309 -4 746 246 173 24 chr5 13160618 13161028 -189924504 - L1MC4 LINE L1 -89 7953 7483 235 267 133 0 chr5 13162009 13162099 -189923433 - MIR SINE MIR -48 214 113 241 167 0 0 chr5 13162142 13162184 -189923348 + MER2 DNA MER2_type 1 42 -303 445 202 0 0 chr5 13162185 13162269 -189923263 + MER2 DNA MER2_type 1 84 -261 675 208 8 0 chr5 13162401 13162531 -189923001 + FLAM_A SINE Alu 1 131 -2 1971 118 10 20 chr5 13162611 13162908 -189922624 - AluSx SINE Alu -18 294 1 24 0 0 0 chr5 13163006 13163030 -189922502 + AT_rich Low_complexity Low_complexity 1 24 0 1319 116 0 0 chr5 13163320 13163501 -189922031 - AluSg/x SINE Alu -12 298 118 270 185 19 0 chr5 13163820 13163874 -189921658 + MER20 DNA MER1_type 159 213 -6 187 309 112 39 chr5 13164207 13164385 -189921147 - MIR SINE MIR -10 252 62 210 260 26 39 chr5 13164809 13164886 -189920646 + L2 LINE L2 2905 2980 -333 252 0 0 0 chr5 13166017 13166045 -189919487 + (T)n Simple_repeat Simple_repeat 1 28 0 609 243 47 42 chr5 13166352 13166566 -189918966 + MIR SINE MIR 18 232 -30 211 200 40 0 chr5 13166578 13166628 -189918904 - MIR SINE MIR -144 118 67 1706 117 58 21 chr5 13166660 13166951 -189918581 - AluSx SINE Alu -9 303 2 858 120 15 0 chr5 13167249 13167382 -189918150 + FRAM SINE Alu 18 152 -24 1704 147 4 19 chr5 13168326 13168584 -189916948 + AluJo SINE Alu 34 287 -25 1686 181 29 40 chr5 13169282 13169462 -189916070 + L1MB8 LINE L1 5762 5943 -235 2055 117 3 43 chr5 13169462 13169786 -189915746 - AluSx SINE Alu -1 311 1 1686 181 29 40 chr5 13169786 13170026 -189915506 + L1MB8 LINE L1 5943 6177 -1 1922 165 3 3 chr5 13170172 13170469 -189915063 - AluJb SINE Alu -15 297 1 2390 106 0 3 chr5 13170483 13170795 -189914737 - AluY SINE Alu 0 311 1 186 260 205 24 chr5 13170813 13170940 -189914592 - MIR SINE MIR -109 153 4 2060 142 13 7 chr5 13171004 13171306 -189914226 - AluJo SINE Alu -8 304 1 6686 134 40 10 chr5 13171349 13171388 -189914144 + Tigger1 DNA MER2_type 2 38 -2380 700 204 0 23 chr5 13171388 13171520 -189914012 - FLAM_A SINE Alu -1 132 4 6686 134 40 10 chr5 13171520 13172437 -189913095 + Tigger1 DNA MER2_type 38 999 -1419 2343 91 24 0 chr5 13172437 13172733 -189912799 - AluSg SINE Alu -7 303 1 6686 134 40 10 chr5 13172733 13172894 -189912638 + Tigger1 DNA MER2_type 999 1154 -1264 1253 104 11 16 chr5 13173009 13173191 -189912341 - AluJb SINE Alu -131 181 1 2458 74 0 3 chr5 13173258 13173555 -189911977 - AluY SINE Alu -15 296 1 2370 95 3 0 chr5 13173555 13173851 -189911681 - AluSx SINE Alu -15 297 1 599 162 0 0 chr5 13173946 13174051 -189911481 - FRAM SINE Alu -8 168 64 2321 110 3 3 chr5 13174148 13174458 -189911074 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr5 13174458 13174479 -189911053 + AT_rich Low_complexity Low_complexity 1 21 0 926 229 85 98 chr5 13174485 13174614 -189910918 + L1ME1 LINE L1 5692 5821 -345 2422 88 0 28 chr5 13174614 13174933 -189910599 - AluSg SINE Alu 0 310 1 926 229 85 98 chr5 13174933 13175252 -189910280 + L1ME1 LINE L1 5821 6134 -32 705 151 19 0 chr5 13175253 13175359 -189910173 + FLAM_C SINE Alu 2 109 -34 1766 171 0 16 chr5 13175431 13175741 -189909791 - AluJo SINE Alu 0 312 8 1693 132 4 0 chr5 13176204 13176439 -189909093 - AluSq SINE Alu -14 299 64 851 242 30 36 chr5 13176723 13177117 -189908415 - MLT1H LTR MaLR 0 549 43 204 217 0 0 chr5 13177849 13177895 -189907637 + L2 LINE L2 2911 2956 -316 233 333 0 0 chr5 13179041 13179113 -189906419 + L2 LINE L2 2902 2973 -299 2125 196 52 5 chr5 13179514 13179958 -189905574 + L1MB7 LINE L1 5579 6043 -141 1979 101 7 35 chr5 13180110 13180419 -189905113 - AluY SINE Alu 0 305 5 29 47 0 0 chr5 13181538 13181581 -189903951 + AT_rich Low_complexity Low_complexity 1 43 0 1903 186 38 55 chr5 13181581 13181704 -189903828 + MLT1D LTR MaLR 1 125 -380 2153 101 10 10 chr5 13181704 13181724 -189903808 - AluSx SINE Alu -13 299 280 189 0 0 0 chr5 13181724 13181745 -189903787 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2153 101 10 10 chr5 13181745 13182022 -189903510 - AluSx SINE Alu -31 281 2 1903 186 38 55 chr5 13182022 13182404 -189903128 + MLT1D LTR MaLR 125 497 -8 908 242 54 0 chr5 13182588 13182811 -189902721 + L1MC4 LINE L1 6800 7034 -1008 1234 156 0 0 chr5 13182824 13182997 -189902535 - AluSq SINE Alu -140 173 1 1924 226 66 20 chr5 13183030 13183623 -189901909 + L1MC4 LINE L1 7043 7662 -380 192 40 0 0 chr5 13183641 13183666 -189901866 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 276 227 93 0 chr5 13183669 13183744 -189901788 + L1MB4 LINE L1 5812 5893 -278 1226 176 146 23 chr5 13183744 13184005 -189901527 + AluSg1 SINE Alu 2 294 -15 2388 104 0 0 chr5 13184007 13184314 -189901218 + AluSx SINE Alu 3 309 -3 1408 160 73 7 chr5 13184323 13184611 -189900921 + L1MB4 LINE L1 5873 6179 -1 1230 167 32 104 chr5 13184653 13184760 -189900772 + L1MC4 LINE L1 6210 6323 -1719 848 65 28 0 chr5 13184760 13184867 -189900665 + HY1 scRNA scRNA 2 111 -1 1230 167 32 104 chr5 13184867 13184880 -189900652 + L1MC4 LINE L1 6323 6335 -1707 207 114 0 0 chr5 13184880 13184915 -189900617 + (TG)n Simple_repeat Simple_repeat 2 36 0 1230 167 32 104 chr5 13184915 13184931 -189900601 + L1MC4 LINE L1 6335 6351 -1691 2428 99 0 0 chr5 13184931 13185234 -189900298 + AluSx SINE Alu 1 303 -9 1230 167 32 104 chr5 13185234 13185458 -189900074 + L1MC4 LINE L1 6351 8028 -14 3319 73 22 44 chr5 13185754 13186208 -189899324 + MLT2A1 LTR ERVL 1 444 0 821 235 105 17 chr5 13186303 13186597 -189898935 + L1ME3 LINE L1 5843 6162 0 1827 195 40 2 chr5 13187255 13187696 -189897836 - MER89 LTR ERV1 0 559 2 517 202 176 8 chr5 13187851 13187970 -189897562 + MER2 DNA MER2_type 206 344 -1 243 143 71 7 chr5 13188687 13188841 -189896691 + (TA)n Simple_repeat Simple_repeat 2 165 0 306 215 107 50 chr5 13188850 13188971 -189896561 + L1MC4 LINE L1 7910 8037 -5 350 305 48 0 chr5 13189335 13189440 -189896092 - L2 LINE L2 -2 3311 3202 371 224 135 13 chr5 13189515 13189671 -189895861 - Charlie2 DNA MER1_type -17 2845 2671 288 0 0 0 chr5 13189784 13189816 -189895716 + (CA)n Simple_repeat Simple_repeat 1 32 0 382 371 45 0 chr5 13189872 13190050 -189895482 - L1MEd LINE L1 -5482 637 452 2007 121 24 13 chr5 13190342 13190640 -189894892 + AluSx SINE Alu 1 301 -11 760 218 175 26 chr5 13191025 13191333 -189894199 - L1MC4 LINE L1 -5 8037 7684 2325 99 0 0 chr5 13191336 13191629 -189893903 + AluSg1 SINE Alu 1 293 -16 324 0 0 0 chr5 13191808 13191844 -189893688 + (CA)n Simple_repeat Simple_repeat 2 37 0 1555 150 59 28 chr5 13191892 13192014 -189893518 + AluJb SINE Alu 1 118 -194 183 42 0 0 chr5 13192014 13192038 -189893494 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1555 150 59 28 chr5 13192038 13192201 -189893331 + AluJb SINE Alu 118 295 -17 269 268 65 89 chr5 13192378 13192624 -189892908 + MLT1K LTR MaLR 189 428 -160 220 192 0 39 chr5 13192773 13192825 -189892707 + MIR SINE MIR 213 262 0 880 165 0 122 chr5 13193284 13193472 -189892060 + FRAM SINE Alu 1 165 -1 193 93 0 47 chr5 13194682 13194725 -189890807 + (TCTCCC)n Simple_repeat Simple_repeat 3 43 0 30 77 0 0 chr5 13195045 13195110 -189890422 + GC_rich Low_complexity Low_complexity 1 65 0 432 292 99 5 chr5 13195935 13196127 -189889405 - MIR SINE MIR -52 210 1 635 280 101 5 chr5 13196565 13196783 -189888749 - MIR SINE MIR -6 256 18 572 0 15 0 chr5 13197283 13197351 -189888181 + (TTTTA)n Simple_repeat Simple_repeat 2 70 0 2114 117 0 0 chr5 13197353 13197635 -189887897 - AluSx SINE Alu -30 282 1 22 0 0 0 chr5 13197647 13197669 -189887863 + AT_rich Low_complexity Low_complexity 1 22 0 205 237 136 0 chr5 13198031 13198090 -189887442 - MIR3 SINE MIR -21 187 121 21 0 0 0 chr5 13198153 13198174 -189887358 + AT_rich Low_complexity Low_complexity 1 21 0 871 215 58 174 chr5 13198661 13198905 -189886627 - L2 LINE L2 0 3313 3042 666 39 0 0 chr5 13198905 13198983 -189886549 - AluY SINE Alu -11 301 224 871 215 58 174 chr5 13198983 13199325 -189886207 - L2 LINE L2 -271 3042 2709 1196 172 43 0 chr5 13199331 13199538 -189885994 - MER2 DNA MER2_type 0 345 130 4034 133 82 20 chr5 13199538 13200244 -189885288 + Tigger2 DNA MER2_type 1 750 -1968 286 121 176 11 chr5 13200289 13200380 -189885152 + Tigger2 DNA MER2_type 2461 2566 -152 856 167 92 17 chr5 13200432 13200606 -189884926 - Tigger2 DNA MER2_type -2526 192 6 273 163 0 0 chr5 13200606 13200655 -189884877 + MER2 DNA MER2_type 128 176 -169 * 365 112 19 149 chr5 13200636 13200661 -189884871 + Tigger2 DNA MER2_type 2532 2559 -159 2184 92 0 3 chr5 13200661 13200953 -189884579 + AluSx SINE Alu 1 291 -21 365 112 19 149 chr5 13200953 13201034 -189884498 + Tigger2 DNA MER2_type 2559 2624 -94 2414 72 3 0 chr5 13201209 13201502 -189884030 - AluSp SINE Alu -19 294 1 873 171 126 31 chr5 13201845 13202289 -189883243 - Charlie1 DNA MER1_type -1 2760 2186 3757 201 89 10 chr5 13202297 13203556 -189881976 + L1MB8 LINE L1 4810 6174 -4 780 181 7 34 chr5 13203554 13203703 -189881829 + L1ME LINE L1 5421 5565 -601 * 363 236 172 19 chr5 13203879 13203957 -189881575 - LTR41 LTR ERVL -592 181 116 180 0 0 0 chr5 13203957 13203977 -189881555 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 363 236 172 19 chr5 13203977 13204055 -189881477 - LTR41 LTR ERVL -657 116 1 232 228 69 59 chr5 13204237 13204249 -189881283 - LTR33A LTR ERVL -363 160 150 2327 92 3 0 chr5 13204249 13204542 -189880990 - AluSq SINE Alu -19 294 1 232 228 69 59 chr5 13204542 13204630 -189880902 - LTR33A LTR ERVL -373 150 59 2211 76 32 0 chr5 13204733 13205031 -189880501 - AluSp SINE Alu 0 307 1 1714 146 84 0 chr5 13205386 13205661 -189879871 - AluSx SINE Alu -14 298 1 265 111 0 0 chr5 13205867 13205903 -189879629 + L1MC3 LINE L1 7238 7273 -512 482 95 0 0 chr5 13205907 13205970 -189879562 - LTR3b LTR ERVK 0 500 438 2003 162 51 56 chr5 13205970 13206401 -189879131 - LTR3 LTR ERVK 0 429 1 2218 158 113 13 chr5 13206401 13206431 -189879101 + L1MC3 LINE L1 7271 7297 -488 189 0 0 0 chr5 13206431 13206452 -189879080 + (ATATG)n Simple_repeat Simple_repeat 2 22 0 2218 158 113 13 chr5 13206452 13206882 -189878650 + L1MC3 LINE L1 7297 7777 -8 975 279 54 56 chr5 13207699 13207789 -189877743 - MLT1I LTR MaLR 0 409 320 1643 139 12 89 chr5 13207789 13208008 -189877524 + AluJo SINE Alu 1 189 -123 1845 139 30 20 chr5 13208008 13208311 -189877221 - AluSx SINE Alu -6 306 1 1643 139 12 89 chr5 13208311 13208415 -189877117 + AluJo SINE Alu 189 299 -13 975 279 54 56 chr5 13208415 13208732 -189876800 - MLT1I LTR MaLR -89 320 3 2101 195 64 50 chr5 13208927 13209486 -189876046 - L1ME1 LINE L1 -3 6163 5597 1910 155 3 10 chr5 13209534 13209844 -189875688 - AluJo SINE Alu -3 309 2 629 120 56 9 chr5 13209868 13209976 -189875556 - L1MB3 LINE L1 -4 6179 6067 242 192 0 19 chr5 13210149 13210201 -189875331 + L1M LINE L1 5310 5360 -802 222 280 220 38 chr5 13210649 13210781 -189874751 + MIR SINE MIR 82 237 -25 2316 99 74 42 chr5 13210781 13211134 -189874398 - THE1B LTR MaLR 0 364 1 763 252 52 0 chr5 13211305 13211460 -189874072 + AluJo SINE Alu 13 175 -137 888 201 99 11 chr5 13212084 13212347 -189873185 - Charlie1b DNA MER1_type -129 394 109 917 178 6 12 chr5 13212358 13212521 -189873011 + FRAM SINE Alu 1 162 -14 2851 155 18 26 chr5 13214419 13215027 -189870505 + pTR5 LTR ERV1 742 1344 -1094 4551 124 15 126 chr5 13215043 13215967 -189869565 + LTR12 LTR ERV1 5 826 0 769 231 61 47 chr5 13217662 13217874 -189867658 - MIR SINE MIR 0 262 48 684 184 56 90 chr5 13218582 13218848 -189866684 - L1MC5 LINE L1 -94 7867 7611 2417 64 0 20 chr5 13218905 13219203 -189866329 - AluY SINE Alu -18 293 2 24 0 0 0 chr5 13219207 13219231 -189866301 + AT_rich Low_complexity Low_complexity 1 24 0 764 188 0 0 chr5 13219231 13219348 -189866184 - FLAM_C SINE Alu -25 118 2 333 0 0 0 chr5 13219599 13219636 -189865896 + (TG)n Simple_repeat Simple_repeat 2 38 0 2205 117 0 3 chr5 13220087 13220386 -189865146 + AluSx SINE Alu 1 298 -14 8979 73 12 1 chr5 13220513 13221703 -189863829 - L1P LINE L1 -928 5218 4016 22 70 0 0 chr5 13222241 13222284 -189863248 + AT_rich Low_complexity Low_complexity 1 43 0 378 306 50 19 chr5 13222302 13222462 -189863070 - L1ME4a LINE L1 -26 6095 5931 2386 246 49 15 chr5 13222917 13223534 -189861998 - L1MEc LINE L1 -5722 674 37 2668 184 30 18 chr5 13224073 13224675 -189860857 - L1M4 LINE L1 -812 5334 4726 411 368 149 13 chr5 13224734 13224962 -189860570 + L2 LINE L2 2999 3257 -15 647 178 118 0 chr5 13225482 13225617 -189859915 + L1MC3 LINE L1 7634 7784 -1 394 247 37 117 chr5 13225624 13225924 -189859608 - L1ME4a LINE L1 -16 6105 5830 629 72 0 0 chr5 13225927 13226010 -189859522 - Alu SINE Alu -4 306 224 1032 147 0 0 chr5 13226010 13226160 -189859372 - AluSq SINE Alu -160 153 4 323 262 68 0 chr5 13226170 13226273 -189859259 - L1ME4a LINE L1 -2005 5803 5694 2508 54 0 0 chr5 13226275 13226573 -189858959 - AluY SINE Alu -13 298 1 246 347 47 2 chr5 13227131 13227274 -189858258 + MIR SINE MIR 9 155 -66 204 163 0 0 chr5 13228463 13228506 -189857026 + (TATG)n Simple_repeat Simple_repeat 2 44 0 354 226 32 40 chr5 13228549 13228673 -189856859 + L1M4 LINE L1 4696 4818 -1328 2687 116 11 24 chr5 13228791 13229171 -189856361 + THE1C LTR MaLR 1 375 0 275 299 20 20 chr5 13229248 13229395 -189856137 + L1M4 LINE L1 4466 4612 -1534 1412 134 20 136 chr5 13229927 13230326 -189855206 + Tigger5 DNA MER2_type 11 2322 -1 483 262 6 98 chr5 13230326 13230562 -189854970 + L1MC4 LINE L1 7040 7252 -733 1285 243 83 98 chr5 13230564 13231145 -189854387 - MLT1G LTR MaLR -3 587 16 275 345 36 24 chr5 13231166 13231334 -189854198 + L1MC4 LINE L1 7261 7430 -612 1560 170 5 0 chr5 13231344 13231627 -189853905 + MER90 LTR ERV1 1 325 -289 2396 51 7 0 chr5 13231893 13232188 -189853344 + AluY SINE Alu 1 297 -14 210 224 0 0 chr5 13232461 13232510 -189853022 + CT-rich Low_complexity Low_complexity 3 51 0 252 0 0 0 chr5 13232684 13232712 -189852820 + (A)n Simple_repeat Simple_repeat 1 28 0 1804 174 3 3 chr5 13232716 13233021 -189852511 + AluJo SINE Alu 1 305 -7 1705 101 5 0 chr5 13234447 13234665 -189850867 + AluSx SINE Alu 1 219 -93 1956 170 60 0 chr5 13235096 13235414 -189850118 + MER1B DNA MER1_type 1 337 0 1916 140 0 0 chr5 13235565 13235843 -189849689 - AluSg SINE Alu -8 302 25 40 21 0 0 chr5 13236519 13236566 -189848966 + AT_rich Low_complexity Low_complexity 1 47 0 2302 79 0 36 chr5 13236850 13237154 -189848378 + AluSp SINE Alu 1 293 -20 1919 173 0 0 chr5 13237717 13238017 -189847515 - AluJb SINE Alu -12 300 1 940 95 0 4 chr5 13239410 13239631 -189845901 + AluSg SINE Alu 2 300 -12 2120 134 3 0 chr5 13239692 13239991 -189845541 + AluSx SINE Alu 1 300 -12 373 320 114 7 chr5 13240622 13240894 -189844638 + HAL1 LINE L1 1463 1763 -744 790 228 147 75 chr5 13241129 13241646 -189843886 + L1ME3 LINE L1 4820 5368 -797 431 309 0 0 chr5 13241647 13241757 -189843775 - MER8 DNA MER2_type -127 112 3 2367 242 111 12 chr5 13241757 13242480 -189843052 + L1ME3 LINE L1 5367 6160 -2 332 292 225 15 chr5 13242688 13243017 -189842515 + L1M4 LINE L1 2217 2614 -3532 523 219 8 17 chr5 13243230 13243349 -189842183 - FLAM_C SINE Alu -21 122 5 1167 277 78 10 chr5 13243512 13244097 -189841435 - L2 LINE L2 -204 3109 2475 597 263 56 9 chr5 13244097 13244310 -189841222 - L2 LINE L2 -1327 1987 1765 245 254 83 55 chr5 13246018 13246199 -189839333 - MIR SINE MIR -6 256 71 220 160 40 20 chr5 13246347 13246397 -189839135 + MIR SINE MIR 90 140 -122 186 333 103 40 chr5 13246441 13246567 -189838965 - L2 LINE L2 -1 3271 3138 1714 171 10 10 chr5 13246815 13247107 -189838425 - AluJo SINE Alu -20 292 1 2246 130 34 6 chr5 13247774 13248128 -189837404 - THE1B LTR MaLR 0 364 1 985 200 15 15 chr5 13248128 13248333 -189837199 - MER3 DNA MER1_type -4 205 1 640 180 0 0 chr5 13248796 13248896 -189836636 - FRAM SINE Alu -32 144 45 734 167 0 0 chr5 13250128 13250242 -189835290 + FLAM_C SINE Alu 5 118 -25 933 83 0 0 chr5 13250350 13250470 -189835062 - AluSq/x SINE Alu -192 120 1 1751 175 34 3 chr5 13250537 13250829 -189834703 - AluSx SINE Alu -11 301 1 1264 216 163 25 chr5 13251318 13251716 -189833816 - MLT1H LTR MaLR 0 549 97 473 118 0 0 chr5 13252153 13252221 -189833311 + AluS SINE Alu 233 300 -12 265 324 56 0 chr5 13252331 13252439 -189833093 - L2 LINE L2 -17 3296 3183 1648 165 7 65 chr5 13252515 13252824 -189832708 - AluJb SINE Alu -21 291 1 184 282 145 30 chr5 13252829 13252960 -189832572 - L2 LINE L2 -241 3072 2927 216 268 18 0 chr5 13253205 13253261 -189832271 + L2 LINE L2 2882 2938 -334 27 0 0 0 chr5 13253468 13253495 -189832037 + AT_rich Low_complexity Low_complexity 1 27 0 2521 67 0 0 chr5 13254249 13254548 -189830984 - AluY SINE Alu -12 299 1 23 54 0 0 chr5 13254711 13254748 -189830784 + AT_rich Low_complexity Low_complexity 1 37 0 552 261 154 0 chr5 13255073 13255261 -189830271 - MLT1L LTR MaLR -8 607 391 213 245 0 167 chr5 13255568 13255760 -189829772 - L2 LINE L2 -38 3234 3075 405 221 139 17 chr5 13258678 13258850 -189826682 + Charlie7 DNA MER1_type 2417 2609 -3 431 246 56 85 chr5 13259063 13259453 -189826079 - L1MC5 LINE L1 -272 7689 7311 235 267 126 58 chr5 13259439 13259645 -189825887 - L1MC4 LINE L1 -549 7493 7274 * 628 268 83 20 chr5 13259921 13260175 -189825357 - L1MC4 LINE L1 -981 7061 6792 1996 130 29 0 chr5 13263482 13263818 -189821714 - AluSx SINE Alu 0 344 1 310 333 63 0 chr5 13263912 13264023 -189821509 - L2 LINE L2 -2 3270 3153 229 377 31 13 chr5 13264428 13264587 -189820945 - MIR3 SINE MIR -5 203 42 254 88 0 0 chr5 13265100 13265134 -189820398 + AluSp/q SINE Alu 244 277 -26 405 223 45 36 chr5 13265731 13265843 -189819689 + MER81 DNA DNA 2 114 0 326 227 134 10 chr5 13266306 13266403 -189819129 + MLT1C LTR MaLR 5 113 -354 2182 113 0 0 chr5 13266420 13266703 -189818829 - AluSx SINE Alu -29 283 1 614 129 0 11 chr5 13266775 13266868 -189818664 - AluS SINE Alu -221 92 1 1153 214 58 90 chr5 13266868 13267246 -189818286 + MLT1C LTR MaLR 102 467 0 508 112 31 0 chr5 13267705 13267803 -189817729 + CT-rich Low_complexity Low_complexity 2 102 0 283 187 13 27 chr5 13268437 13268512 -189817020 - MLT1K LTR MaLR -323 265 192 408 40 0 0 chr5 13268872 13268922 -189816610 + (GA)n Simple_repeat Simple_repeat 2 51 0 * 558 0 0 0 chr5 13268921 13268983 -189816549 + (TG)n Simple_repeat Simple_repeat 2 63 0 1278 210 102 46 chr5 13269037 13269249 -189816283 + L1MD3 LINE L1 7459 7658 -384 2414 104 0 0 chr5 13269249 13269558 -189815974 + AluSx SINE Alu 1 309 -3 1278 210 102 46 chr5 13269558 13269573 -189815959 + L1MD3 LINE L1 7658 7671 -371 3433 191 10 2 chr5 13269573 13270171 -189815361 - MER77 LTR ERV1 -2 603 1 1278 210 102 46 chr5 13270171 13270436 -189815096 + L1MD3 LINE L1 7671 8041 -1 2379 80 23 0 chr5 13270456 13270755 -189814777 + AluSx SINE Alu 1 306 -6 381 283 80 22 chr5 13271300 13271438 -189814094 + L2 LINE L2 3166 3311 -2 2060 146 0 7 chr5 13271621 13271798 -189813734 - AluSx SINE Alu -6 306 130 189 74 0 0 chr5 13271798 13271825 -189813707 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2060 146 0 7 chr5 13271825 13271955 -189813577 - AluSx SINE Alu -182 130 1 1660 187 124 26 chr5 13272349 13272767 -189812765 + MLT1C LTR MaLR 1 459 -8 266 115 19 0 chr5 13272769 13272821 -189812711 + (TATAA)n Simple_repeat Simple_repeat 1 53 0 232 247 98 46 chr5 13273070 13273264 -189812268 + L1ME3A LINE L1 5273 5476 -2332 2210 229 61 42 chr5 13273333 13273927 -189811605 + MER77 LTR ERV1 1 605 0 1502 189 70 22 chr5 13274385 13274755 -189810777 + MLT1B LTR MaLR 1 388 -2 206 245 75 0 chr5 13276526 13276579 -189808953 - L2 LINE L2 -16 3256 3200 410 303 19 19 chr5 13276600 13276755 -189808777 + MIR SINE MIR 90 244 -18 1712 159 0 70 chr5 13277056 13277371 -189808161 - AluJo SINE Alu -19 293 1 321 260 107 34 chr5 13277372 13277518 -189808014 + MER112 DNA MER1_type 6 140 -120 387 0 0 0 chr5 13277518 13277561 -189807971 + (TG)n Simple_repeat Simple_repeat 2 44 0 1416 180 67 0 chr5 13277561 13277828 -189807704 - AluJb SINE Alu -27 285 1 321 260 107 34 chr5 13277828 13277857 -189807675 + MER112 DNA MER1_type 139 195 -65 442 260 133 73 chr5 13278435 13278789 -189806743 + MLT1J2 LTR MaLR 31 405 -45 1533 224 80 23 chr5 13278904 13279341 -189806191 + MLT1C LTR MaLR 6 467 0 2170 118 3 0 chr5 13279552 13279840 -189805692 - AluSx SINE Alu -18 294 6 2144 98 3 18 chr5 13280222 13280554 -189804978 - AluSx SINE Alu 0 328 1 1158 216 16 0 chr5 13280614 13280859 -189804673 - MLT1C LTR MaLR -6 461 213 1865 149 0 17 chr5 13280860 13281169 -189804363 - AluSx SINE Alu 0 304 1 1478 260 32 46 chr5 13281186 13281709 -189803823 + L1ME3A LINE L1 5595 6110 -60 2179 95 0 63 chr5 13281828 13282145 -189803387 + AluSx SINE Alu 1 297 -15 1244 106 0 0 chr5 13282150 13282311 -189803221 + AluSq SINE Alu 139 299 -14 208 121 0 0 chr5 13282353 13282386 -189803146 + MIR SINE MIR 218 250 -12 331 230 50 20 chr5 13282502 13282602 -189802930 + L1ME3A LINE L1 6060 6162 -8 230 289 56 0 chr5 13282622 13282712 -189802820 + MIR SINE MIR 148 242 -20 568 253 143 47 chr5 13282736 13282837 -189802695 - MER46C DNA MER2_type -6 332 242 2686 161 66 19 chr5 13282837 13283323 -189802209 - LTR22 LTR ERVK 0 509 1 568 253 143 47 chr5 13283323 13283522 -189802010 - MER46C DNA MER2_type -96 242 3 350 244 56 0 chr5 13283893 13283983 -189801549 + MER53 DNA DNA 1 95 -94 * 380 191 278 8 chr5 13283909 13284035 -189801497 - MER53 DNA DNA -7 182 23 2055 171 34 8 chr5 13284099 13284479 -189801053 + MLT1B LTR MaLR 1 390 0 1901 145 21 0 chr5 13285133 13285416 -189800116 - AluSx SINE Alu -23 289 1 671 237 19 0 chr5 13285526 13285682 -189799850 - MER20 DNA MER1_type -14 205 47 259 160 40 0 chr5 13286658 13286708 -189798824 - MER5B DNA MER1_type -126 52 1 247 256 73 0 chr5 13286723 13286805 -189798727 + MER5B DNA MER1_type 58 145 -33 325 203 35 7 chr5 13286973 13287052 -189798480 + MER5A DNA MER1_type 13 109 -80 181 287 85 43 chr5 13287094 13287188 -189798344 - MIR3 SINE MIR -39 169 72 428 331 51 28 chr5 13287799 13287923 -189797609 - MARNA DNA Mariner -242 344 224 1967 132 7 26 chr5 13287923 13288226 -189797306 - AluJb SINE Alu -15 297 1 428 331 51 28 chr5 13288226 13288355 -189797177 - MARNA DNA Mariner -362 224 85 429 76 38 13 chr5 13288450 13288529 -189797003 + CT-rich Low_complexity Low_complexity 2 82 0 1706 221 35 20 chr5 13289132 13289588 -189795944 - MLT1C LTR MaLR -2 465 3 2111 121 0 0 chr5 13289650 13289959 -189795573 - AluSx SINE Alu 0 313 5 2420 84 0 10 chr5 13290066 13290415 -189795117 - AluSq SINE Alu 0 313 1 426 198 57 38 chr5 13291023 13291180 -189794352 - MLT1D LTR MaLR -16 451 292 591 180 55 0 chr5 13291272 13291400 -189794132 - MLT1D LTR MaLR -366 139 5 302 212 0 115 chr5 13291811 13291924 -189793608 + MER5A DNA MER1_type 10 109 -80 379 291 62 34 chr5 13292473 13292652 -189792880 + MLT1K LTR MaLR 145 328 -260 239 268 28 0 chr5 13292920 13292991 -189792541 + MLT1K LTR MaLR 509 581 -7 1955 156 0 3 chr5 13293270 13293558 -189791974 - AluJb SINE Alu -25 287 1 369 118 36 154 chr5 13293558 13293668 -189791864 - AluJo SINE Alu -167 135 39 401 301 75 7 chr5 13293934 13294080 -189791452 + MIR SINE MIR 107 262 0 381 246 82 58 chr5 13294861 13295032 -189790500 - MLT1C LTR MaLR -287 180 6 2281 92 17 0 chr5 13295478 13295771 -189789761 - AluSx SINE Alu -14 298 1 1140 262 36 23 chr5 13295776 13296079 -189789453 + LTR40a LTR ERVL 65 371 -148 1429 198 40 11 chr5 13296079 13296531 -189789001 + MER74A LTR ERVL 1 558 0 837 131 35 0 chr5 13296534 13296679 -189788853 + LTR40a LTR ERVL 370 519 0 443 196 0 28 chr5 13296970 13297077 -189788455 - MER5A DNA MER1_type -84 105 2 228 235 0 0 chr5 13297410 13297461 -189788071 + L2 LINE L2 3221 3271 -1 2314 89 14 0 chr5 13297674 13297965 -189787567 + AluSp SINE Alu 1 295 -18 224 295 64 27 chr5 13298381 13298496 -189787036 + MIR SINE MIR 40 157 -75 1615 192 65 57 chr5 13298941 13299399 -189786133 + MLT1C LTR MaLR 6 467 0 2204 138 0 0 chr5 13299773 13300070 -189785462 - AluSx SINE Alu -15 297 1 194 289 62 99 chr5 13300235 13300446 -189785086 + MIR SINE MIR 55 257 -5 1332 190 40 0 chr5 13300506 13300780 -189784752 + MER58B DNA MER1_type 57 341 0 367 300 138 9 chr5 13300780 13300990 -189784542 + MIR SINE MIR 26 262 0 688 281 76 38 chr5 13301556 13301926 -189783606 + MLT1J2 LTR MaLR 59 442 -8 312 269 107 54 chr5 13301926 13302075 -189783457 - MIR3 SINE MIR -40 168 12 35 0 0 0 chr5 13302081 13302116 -189783416 + AT_rich Low_complexity Low_complexity 1 35 0 1339 263 68 41 chr5 13302254 13302669 -189782863 - LTR41 LTR ERVL -6 767 342 1096 290 91 22 chr5 13302947 13303498 -189782034 - MLT1E LTR MaLR 0 593 5 2118 144 3 3 chr5 13303536 13303848 -189781684 - AluSx SINE Alu 0 312 1 1399 226 54 57 chr5 13304093 13304553 -189780979 - MLT1C LTR MaLR 0 467 9 275 238 33 90 chr5 13304837 13304959 -189780573 + MIR SINE MIR 81 195 -67 468 86 14 20 chr5 13304962 13305047 -189780485 + MLT1E1 LTR MaLR 1 81 -512 424 304 26 41 chr5 13305164 13305358 -189780174 - MLT1K LTR MaLR -244 344 154 847 313 80 17 chr5 13305762 13306222 -189779310 + LTR33 LTR ERVL 1 489 -32 2042 142 0 31 chr5 13306273 13306590 -189778942 + AluSx SINE Alu 4 310 -2 1778 164 3 40 chr5 13308215 13308519 -189777013 - AluJo SINE Alu -14 298 6 2469 73 13 0 chr5 13308544 13308844 -189776688 - AluY SINE Alu -7 304 1 2606 134 11 17 chr5 13309917 13310380 -189775152 + MER4C LTR ERV1 3 462 -3 1722 198 19 11 chr5 13310583 13310956 -189774576 + MLT1B LTR MaLR 15 390 0 2010 108 56 10 chr5 13311863 13312151 -189773381 - AluSq SINE Alu -12 301 1 2569 62 3 3 chr5 13312177 13312485 -189773047 - AluY SINE Alu -3 308 1 405 279 93 6 chr5 13313890 13314062 -189771470 + L2 LINE L2 3107 3293 -20 1980 125 25 7 chr5 13314790 13315107 -189770425 - AluSq SINE Alu 0 322 1 3144 181 71 72 chr5 13315422 13316285 -189769247 + MER21B LTR ERV1 1 862 -1 469 310 139 40 chr5 13317817 13318593 -189766939 - L2 LINE L2 -40 3273 2428 337 258 106 46 chr5 13319569 13319720 -189765812 - MER63A DNA MER1_type 0 210 51 2386 101 0 3 chr5 13321208 13321514 -189764018 - AluSq SINE Alu -8 305 1 196 297 121 0 chr5 13322836 13322927 -189762605 + MIR SINE MIR 99 200 -62 1777 174 16 7 chr5 13323295 13323599 -189761933 + AluJo SINE Alu 1 307 -5 466 254 8 8 chr5 13323798 13323916 -189761616 + L2 LINE L2 3193 3310 -3 2270 101 0 3 chr5 13325082 13325378 -189760154 + AluSx SINE Alu 1 295 -17 447 52 0 0 chr5 13325379 13325437 -189760095 + (CA)n Simple_repeat Simple_repeat 2 59 0 1918 118 54 25 chr5 13325441 13325721 -189759811 + AluSx SINE Alu 1 288 -24 401 75 0 15 chr5 13325724 13325791 -189759741 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 2389 76 9 22 chr5 13326917 13327233 -189758299 + AluSp SINE Alu 1 312 -1 2088 135 10 0 chr5 13328187 13328483 -189757049 - AluSx SINE Alu -13 299 1 299 296 171 19 chr5 13329549 13329765 -189755767 + MIR SINE MIR 14 262 0 2034 148 0 22 chr5 13329808 13330125 -189755407 - AluJb SINE Alu -2 310 1 555 225 59 59 chr5 13331016 13331047 -189754485 + MER20 DNA MER1_type 33 63 -156 2062 125 3 10 chr5 13331047 13331343 -189754189 - AluSx SINE Alu -18 294 1 555 225 59 59 chr5 13331343 13331498 -189754034 + MER20 DNA MER1_type 62 219 0 1866 180 10 0 chr5 13331770 13332076 -189753456 - AluJo SINE Alu -3 309 1 2183 85 14 3 chr5 13332449 13332754 -189752778 + AluSq SINE Alu 1 308 0 1551 178 132 64 chr5 13332997 13333394 -189752138 + MLT1D LTR MaLR 3 438 -67 2873 7 0 0 chr5 13333394 13333696 -189751836 - AluYb8 SINE Alu -16 302 1 1551 178 132 64 chr5 13333696 13333769 -189751763 + MLT1D LTR MaLR 438 505 0 804 136 0 0 chr5 13333846 13333964 -189751568 - FLAM_C SINE Alu -15 118 1 22 0 0 0 chr5 13333985 13334007 -189751525 + AT_rich Low_complexity Low_complexity 1 22 0 357 315 151 50 chr5 13336019 13336105 -189749427 + L1ME4a LINE L1 5439 5515 -2293 1791 87 101 56 chr5 13336105 13336391 -189749141 + AluSg SINE Alu 3 301 -9 357 315 151 50 chr5 13336391 13336542 -189748990 + L1ME4a LINE L1 5515 5700 -2108 331 271 192 34 chr5 13336594 13336771 -189748761 + L1ME4a LINE L1 5841 6045 -76 422 289 175 42 chr5 13336806 13337416 -189748116 - L2 LINE L2 0 3313 2625 1527 203 115 18 chr5 13337441 13337894 -189747638 - L1M4 LINE L1 -848 5298 4802 26 64 0 0 chr5 13340517 13340564 -189744968 + AT_rich Low_complexity Low_complexity 1 47 0 216 0 0 0 chr5 13340971 13340995 -189744537 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2088 110 0 22 chr5 13341020 13341339 -189744193 + AluSx SINE Alu 1 312 0 543 53 0 0 chr5 13341339 13341414 -189744118 + (TA)n Simple_repeat Simple_repeat 1 75 0 24 32 0 0 chr5 13342651 13342682 -189742850 + AT_rich Low_complexity Low_complexity 1 31 0 1982 110 45 0 chr5 13343848 13344138 -189741394 + AluSx SINE Alu 1 303 -9 190 354 108 0 chr5 13344697 13344827 -189740705 + MIR SINE MIR 100 243 -19 324 94 0 0 chr5 13345366 13345419 -189740113 + (CA)n Simple_repeat Simple_repeat 1 53 0 2297 88 0 25 chr5 13346434 13346751 -189738781 + AluSc SINE Alu 1 309 0 483 273 123 0 chr5 13346751 13346932 -189738600 + L2 LINE L2 2364 2567 -747 366 299 76 28 chr5 13347224 13347337 -189738195 + MIR3 SINE MIR 25 148 -60 2020 115 0 20 chr5 13347337 13347642 -189737890 + AluSx SINE Alu 1 299 -13 366 299 76 28 chr5 13347642 13347672 -189737860 + MIR3 SINE MIR 148 175 -33 274 347 80 15 chr5 13347919 13348118 -189737414 + MIR SINE MIR 11 222 -40 2091 117 0 16 chr5 13348397 13348713 -189736819 + AluSx SINE Alu 2 312 0 239 351 92 51 chr5 13349166 13349798 -189735734 - L2 LINE L2 -337 2977 2320 2774 151 49 31 chr5 13352219 13352774 -189732758 + MER34B LTR ERV1 1 565 0 329 324 92 61 chr5 13354287 13354580 -189730952 - HAL1 LINE L1 -1060 1447 1146 926 94 101 7 chr5 13355308 13355457 -189730075 - AluSp SINE Alu -150 163 1 23 0 0 0 chr5 13355574 13355597 -189729935 + AT_rich Low_complexity Low_complexity 1 23 0 2146 100 3 10 chr5 13355597 13355897 -189729635 - AluSp SINE Alu -15 298 1 3055 181 36 6 chr5 13355898 13356543 -189728989 - L1M4 LINE L1 -815 5331 4668 850 124 0 0 chr5 13356551 13356680 -189728852 - FLAM_C SINE Alu -1 142 14 491 93 67 0 chr5 13356776 13356851 -189728681 - MADE1 DNA Mariner 0 80 1 2053 120 7 0 chr5 13356964 13357272 -189728260 + AluSx SINE Alu 1 310 -2 329 272 48 20 chr5 13357820 13357967 -189727565 - MER77 LTR ERV1 -28 577 427 293 257 27 14 chr5 13358044 13358118 -189727414 - MER68 LTR ERV1 -264 298 224 2117 113 7 3 chr5 13358587 13359012 -189726520 + AluSq SINE Alu 1 426 0 2024 117 0 3 chr5 13359040 13359330 -189726202 + AluSx SINE Alu 1 289 -23 1299 180 21 28 chr5 13359817 13360100 -189725432 + AluJo SINE Alu 27 307 -5 472 239 72 24 chr5 13360171 13360338 -189725194 + MIR SINE MIR 62 236 -26 1940 139 0 7 chr5 13360457 13360801 -189724731 - AluSx SINE Alu 0 312 1 2198 110 0 0 chr5 13360805 13361114 -189724418 - AluSx SINE Alu -3 309 1 325 243 47 81 chr5 13361426 13361574 -189723958 - MLT1J LTR MaLR -135 376 234 736 223 16 77 chr5 13362219 13362466 -189723066 + MARNA DNA Mariner 184 415 -171 228 191 0 43 chr5 13363167 13363214 -189722318 - L2 LINE L2 0 3272 3228 2577 30 3 0 chr5 13363429 13363733 -189721799 - AluY SINE Alu -6 305 1 2163 119 86 6 chr5 13364153 13364490 -189721042 + THE1B LTR MaLR 1 364 0 297 155 0 0 chr5 13364616 13364674 -189720858 + (CA)n Simple_repeat Simple_repeat 1 58 0 692 268 84 9 chr5 13365026 13365239 -189720293 - MIR SINE MIR -19 243 15 503 256 151 77 chr5 13365323 13365869 -189719663 - MLT1G LTR MaLR -6 584 5 1838 89 4 0 chr5 13366198 13366446 -189719086 + AluSp SINE Alu 54 302 -11 1922 86 25 4 chr5 13367129 13367435 -189718097 + AluSx SINE Alu 1 312 0 412 246 0 79 chr5 13367530 13367656 -189717876 + MIR SINE MIR 115 230 -32 32 67 0 0 chr5 13368184 13368244 -189717288 + AT_rich Low_complexity Low_complexity 1 60 0 2016 124 0 7 chr5 13368250 13368548 -189716984 - AluSg SINE Alu -14 296 1 3332 225 70 78 chr5 13368574 13368637 -189716895 - L1MC4 LINE L1 -23 8019 7957 2100 121 0 3 chr5 13368637 13368942 -189716590 - AluSx SINE Alu -8 304 1 3332 225 70 78 chr5 13368942 13369544 -189715988 - L1MC4 LINE L1 -85 7957 7368 2121 108 0 14 chr5 13369544 13369840 -189715692 - AluSq SINE Alu -21 292 1 3332 225 70 78 chr5 13369840 13370447 -189715085 - L1MC4 LINE L1 -674 7368 6757 1977 122 10 0 chr5 13370662 13370958 -189714574 + AluSp SINE Alu 1 299 -14 948 238 75 34 chr5 13370962 13371227 -189714305 + MLT1C LTR MaLR 192 467 0 337 331 0 17 chr5 13371304 13371485 -189714047 + (CA)n Simple_repeat Simple_repeat 2 179 0 288 360 0 6 chr5 13371591 13371769 -189713763 + (CA)n Simple_repeat Simple_repeat 2 178 0 325 358 0 0 chr5 13371782 13371961 -189713571 + (CA)n Simple_repeat Simple_repeat 2 180 0 344 300 0 44 chr5 13371966 13372146 -189713386 + (CACG)n Simple_repeat Simple_repeat 2 173 0 247 380 16 0 chr5 13372188 13372381 -189713151 - L1MC/D LINE L1 -302 5819 5625 678 226 55 6 chr5 13372387 13372551 -189712981 - L1MA10 LINE L1 0 6334 6163 759 176 15 0 chr5 13372559 13372690 -189712842 - FLAM_A SINE Alu 0 133 1 779 205 42 6 chr5 13373248 13373414 -189712118 + MER20 DNA MER1_type 34 205 -14 2146 100 0 10 chr5 13373502 13373812 -189711720 + AluSx SINE Alu 1 307 -5 810 218 41 0 chr5 13374497 13374667 -189710865 - MER45A DNA AcHobo -1 177 1 2577 124 28 5 chr5 13374840 13375228 -189710304 - MLT2C1 LTR ERVL 0 397 1 284 209 353 14 chr5 13376320 13376459 -189709073 - MER5A DNA MER1_type -3 186 1 926 196 41 0 chr5 13376774 13376993 -189708539 + L1MB7 LINE L1 5955 6182 -2 203 287 107 57 chr5 13377169 13377291 -189708241 - MIR3 SINE MIR -5 203 76 1757 166 0 10 chr5 13377620 13377922 -189707610 - AluJb SINE Alu -13 299 1 592 188 0 60 chr5 13378530 13378647 -189706885 + MER81 DNA DNA 2 111 -3 2047 106 24 0 chr5 13379379 13379671 -189705861 + AluSq SINE Alu 1 299 -14 221 116 58 43 chr5 13379672 13379741 -189705791 + GA-rich Low_complexity Low_complexity 1 70 0 257 274 84 106 chr5 13380142 13380321 -189705211 - MIR SINE MIR -14 248 74 315 235 0 0 chr5 13380411 13380479 -189705053 - MER5A DNA MER1_type -106 83 16 490 241 196 9 chr5 13380634 13380803 -189704729 - L1MD2 LINE L1 -9 6350 6128 180 0 0 0 chr5 13380803 13380823 -189704709 + (TG)n Simple_repeat Simple_repeat 2 21 0 490 241 196 9 chr5 13380823 13380877 -189704655 - L1MD2 LINE L1 -231 6128 6085 * 601 297 61 0 chr5 13380873 13381085 -189704447 - L1MD1 LINE L1 -159 6083 5859 2206 74 7 10 chr5 13381363 13381659 -189703873 - AluSc SINE Alu -14 295 1 1573 167 3 31 chr5 13381684 13382004 -189703528 - AluJo SINE Alu 0 312 1 399 222 114 68 chr5 13382040 13382246 -189703286 - L1 LINE L1 -2799 3347 3106 323 277 92 0 chr5 13382253 13382383 -189703149 - L1 LINE L1 -3136 3010 2869 1904 130 60 41 chr5 13382916 13383284 -189702248 + THE1C LTR MaLR 1 375 0 2213 97 0 0 chr5 13383315 13383615 -189701917 - AluY SINE Alu -11 300 1 326 215 158 51 chr5 13384374 13384532 -189701000 - MER5A DNA MER1_type -6 183 9 745 196 27 71 chr5 13384547 13384613 -189700919 - MER5B DNA MER1_type 0 178 111 2474 75 0 0 chr5 13384613 13384921 -189700611 + AluSq SINE Alu 1 308 -5 745 196 27 71 chr5 13384921 13385038 -189700494 - MER5B DNA MER1_type -67 111 3 1979 107 4 0 chr5 13385300 13385607 -189699925 + AluSx SINE Alu 1 308 0 1847 159 3 7 chr5 13385943 13386252 -189699280 + AluJo SINE Alu 1 308 -4 618 289 132 0 chr5 13386272 13386500 -189699032 + MLT1H LTR MaLR 165 422 -127 2205 115 0 0 chr5 13386625 13386937 -189698595 + AluSx SINE Alu 1 312 0 261 0 0 0 chr5 13387175 13387204 -189698328 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1772 131 4 0 chr5 13387212 13387487 -189698045 - AluJb SINE Alu -36 276 1 25 0 0 0 chr5 13387738 13387763 -189697769 + AT_rich Low_complexity Low_complexity 1 25 0 1944 117 3 0 chr5 13387968 13388258 -189697274 + AluSx SINE Alu 1 291 -21 199 185 385 41 chr5 13389011 13389133 -189696399 + L2 LINE L2 2919 3080 -233 204 40 0 0 chr5 13389818 13389843 -189695689 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 406 248 73 0 chr5 13389915 13390024 -189695508 - MIR SINE MIR -35 227 111 641 72 155 0 chr5 13390661 13390758 -189694774 + THE1C LTR MaLR 1 112 -263 264 59 0 0 chr5 13391141 13391175 -189694357 + (TTTTC)n Simple_repeat Simple_repeat 5 38 0 40 0 0 0 chr5 13392335 13392375 -189693157 + GC_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr5 13392558 13392582 -189692950 + GC_rich Low_complexity Low_complexity 1 24 0 23 101 0 0 chr5 13392764 13392843 -189692689 + GC_rich Low_complexity Low_complexity 1 79 0 21 0 0 0 chr5 13394683 13394704 -189690828 + AT_rich Low_complexity Low_complexity 1 21 0 2457 61 0 22 chr5 13394773 13395106 -189690426 + AluY SINE Alu 1 311 0 1613 148 104 4 chr5 13395223 13395493 -189690039 + AluJb SINE Alu 1 297 -15 1954 138 0 7 chr5 13395820 13396096 -189689436 + AluSx SINE Alu 31 304 -8 191 314 43 0 chr5 13396325 13396395 -189689137 + MIR SINE MIR 2 74 -188 276 98 18 6 chr5 13396879 13396933 -189688599 + Alu SINE Alu 1 37 -264 223 89 0 44 chr5 13396933 13396978 -189688554 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 2482 81 0 0 chr5 13398117 13398413 -189687119 + AluSg SINE Alu 1 296 -14 205 363 29 29 chr5 13398594 13398696 -189686836 + L2 LINE L2 3210 3311 -2 961 205 6 0 chr5 13399721 13399887 -189685645 + AluJb SINE Alu 136 302 -10 2071 147 6 16 chr5 13400585 13400899 -189684633 - AluJo SINE Alu -1 311 1 243 0 0 0 chr5 13401714 13401741 -189683791 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2275 85 3 3 chr5 13401742 13402052 -189683480 - AluSq SINE Alu 0 310 1 273 146 0 0 chr5 13402653 13402701 -189682831 + (CA)n Simple_repeat Simple_repeat 1 48 0 2111 89 55 27 chr5 13403407 13403700 -189681832 + AluSx SINE Alu 1 301 -11 1436 274 65 23 chr5 13404183 13404737 -189680795 + L1ME3A LINE L1 5583 6159 -11 188 35 35 0 chr5 13404737 13404766 -189680766 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 441 119 0 0 chr5 13404772 13404831 -189680701 - AluJ/FLAM SINE Alu -252 60 2 226 360 45 9 chr5 13404888 13404999 -189680533 + MIR SINE MIR 148 262 0 2155 123 0 3 chr5 13405478 13405771 -189679761 + AluSq SINE Alu 1 292 -21 681 255 0 25 chr5 13405865 13406026 -189679506 + MIR SINE MIR 98 254 -8 2347 94 3 3 chr5 13406742 13407041 -189678491 + AluSq SINE Alu 1 299 -14 905 234 75 34 chr5 13407045 13407310 -189678222 + MLT1C LTR MaLR 192 467 0 367 341 0 0 chr5 13407431 13407610 -189677922 + (CA)n Simple_repeat Simple_repeat 2 180 0 294 366 0 0 chr5 13407667 13407842 -189677690 + (CA)n Simple_repeat Simple_repeat 2 176 0 343 352 0 0 chr5 13407877 13408056 -189677476 + (CA)n Simple_repeat Simple_repeat 2 180 0 * 346 291 0 53 chr5 13408008 13408197 -189677335 + (CACG)n Simple_repeat Simple_repeat 1 179 0 243 380 16 0 chr5 13408261 13408454 -189677078 - L1MC/D LINE L1 -302 5819 5625 648 226 55 6 chr5 13408460 13408624 -189676908 - L1MA10 LINE L1 0 6334 6163 825 188 0 0 chr5 13408632 13408765 -189676767 - FLAM_A SINE Alu 0 133 1 1610 143 4 24 chr5 13409299 13409551 -189675981 - AluJo SINE Alu -38 274 28 1070 196 50 36 chr5 13409702 13410003 -189675529 - LTR37A LTR ERV1 0 426 122 1499 214 33 82 chr5 13410009 13410495 -189675037 + MLT1C LTR MaLR 6 467 0 477 165 31 31 chr5 13410495 13410620 -189674912 - LTR37A LTR ERV1 -301 125 1 675 35 0 0 chr5 13411435 13411521 -189674011 + (GA)n Simple_repeat Simple_repeat 2 87 0 927 141 7 0 chr5 13411521 13411663 -189673869 - AluSg/x SINE Alu -41 271 129 885 189 0 0 chr5 13411681 13411824 -189673708 - FLAM_C SINE Alu 0 143 1 2352 107 0 0 chr5 13412620 13412918 -189672614 - AluSx SINE Alu -14 298 1 413 312 29 12 chr5 13412982 13413152 -189672380 + MLT1L LTR MaLR 433 605 -10 1294 140 151 65 chr5 13413759 13414063 -189671469 + AluJo SINE Alu 1 302 0 192 234 106 64 chr5 13414491 13414585 -189670947 - MIR SINE MIR -36 226 129 428 290 23 8 chr5 13414667 13414798 -189670734 - LTR67 LTR ERVL -1 556 424 180 0 0 0 chr5 13414828 13414848 -189670684 + (A)n Simple_repeat Simple_repeat 1 20 0 2387 227 48 5 chr5 13414862 13415448 -189670084 - L1MC3 LINE L1 -25 7760 7150 819 159 0 43 chr5 13415881 13416019 -189669513 + FLAM_C SINE Alu 1 132 -1 2194 109 0 61 chr5 13416078 13416407 -189669125 - AluSx SINE Alu -3 309 1 1570 189 115 9 chr5 13416664 13417002 -189668530 + MLT1A2 LTR MaLR 1 374 0 271 208 0 57 chr5 13418442 13418548 -189666984 + (CTCA)n Simple_repeat Simple_repeat 4 103 0 184 246 70 0 chr5 13419347 13419404 -189666128 + MIR SINE MIR 180 240 -22 183 146 0 0 chr5 13419967 13420008 -189665524 + (A)n Simple_repeat Simple_repeat 1 41 0 485 289 18 36 chr5 13420133 13420299 -189665233 + L1ME1 LINE L1 5953 6115 -51 330 250 7 46 chr5 13420312 13420464 -189665068 + (TTATA)n Simple_repeat Simple_repeat 3 148 0 1995 121 3 35 chr5 13420523 13420838 -189664694 + AluSx SINE Alu 1 305 -7 2108 132 3 10 chr5 13420850 13421146 -189664386 + AluJo SINE Alu 5 298 -14 216 0 0 0 chr5 13421790 13421814 -189663718 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 2317 81 14 0 chr5 13422366 13422662 -189662870 - AluSc SINE Alu -9 300 1 976 139 7 0 chr5 13422662 13422806 -189662726 - FRAM SINE Alu -14 162 18 231 248 9 55 chr5 13423332 13423441 -189662091 + G-rich Low_complexity Low_complexity 2 105 0 1644 232 64 2 chr5 13423614 13424049 -189661483 - MLT1C LTR MaLR 0 467 6 2211 111 0 3 chr5 13424491 13424780 -189660752 - AluSx SINE Alu -24 288 1 331 231 64 22 chr5 13425012 13425167 -189660365 - MER63 DNA MER1_type -2 1686 675 470 254 42 28 chr5 13425198 13425340 -189660192 - MIR SINE MIR -92 170 27 323 307 68 0 chr5 13425358 13425521 -189660011 - L1ME4a LINE L1 -224 5897 5724 413 249 6 0 chr5 13425851 13426028 -189659504 + (CA)n Simple_repeat Simple_repeat 1 178 0 2151 182 42 7 chr5 13426306 13426576 -189658956 - MLT1C LTR MaLR -16 451 192 6547 84 9 15 chr5 13426576 13426958 -189658574 + L1PA10 LINE L1 5106 5489 -679 2384 93 0 3 chr5 13426958 13427258 -189658274 + AluSp SINE Alu 1 299 -14 6547 84 9 15 chr5 13427258 13427929 -189657603 + L1PA10 LINE L1 5489 6155 -13 198 0 0 0 chr5 13427929 13427951 -189657581 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 6547 84 9 15 chr5 13427951 13427962 -189657570 + L1PA10 LINE L1 6155 6165 -3 2151 182 42 7 chr5 13427962 13428124 -189657408 - MLT1C LTR MaLR -275 192 4 189 0 0 0 chr5 13428292 13428313 -189657219 + (T)n Simple_repeat Simple_repeat 1 21 0 3970 198 45 29 chr5 13428749 13429736 -189655796 - MER70-int LTR ERVL -754 4269 3268 1445 163 39 14 chr5 13429919 13430201 -189655331 - AluJo SINE Alu -23 289 1 22 0 0 0 chr5 13430310 13430332 -189655200 + AT_rich Low_complexity Low_complexity 1 22 0 789 104 16 0 chr5 13434749 13434874 -189650658 + MER4D LTR ERV1 202 328 -575 43 35 0 0 chr5 13434982 13435039 -189650493 + AT_rich Low_complexity Low_complexity 1 57 0 238 245 83 54 chr5 13436012 13436216 -189649316 - L1P5 LINE L1 -692 5464 5255 286 285 68 50 chr5 13436253 13436695 -189648837 - L1MEd LINE L1 -4865 1254 805 504 254 159 38 chr5 13437112 13437376 -189648156 - L1M4 LINE L1 -2808 3338 3043 1921 158 144 23 chr5 13437772 13438201 -189647331 + MLT2B1 LTR ERVL 1 481 -39 23 86 0 0 chr5 13438206 13438264 -189647268 + AT_rich Low_complexity Low_complexity 1 58 0 202 145 14 14 chr5 13438286 13438355 -189647177 + (TA)n Simple_repeat Simple_repeat 1 69 0 21 95 0 0 chr5 13438367 13438430 -189647102 + AT_rich Low_complexity Low_complexity 1 63 0 788 258 174 39 chr5 13438764 13439326 -189646206 + L1ME3A LINE L1 5334 5971 -199 304 275 119 0 chr5 13439363 13439472 -189646060 + L1ME3A LINE L1 6048 6169 -1 977 274 125 38 chr5 13439536 13440265 -189645267 + L1ME4a LINE L1 4342 5133 -1013 24 0 0 0 chr5 13440285 13440309 -189645223 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr5 13441677 13441712 -189643820 + AT_rich Low_complexity Low_complexity 1 35 0 218 167 17 0 chr5 13441967 13442027 -189643505 + CT-rich Low_complexity Low_complexity 2 62 0 896 208 137 9 chr5 13443133 13443345 -189642187 + MER8 DNA MER2_type 1 239 0 405 0 0 0 chr5 13443478 13443523 -189642009 + (TG)n Simple_repeat Simple_repeat 2 46 0 31 0 0 0 chr5 13443977 13444008 -189641524 + AT_rich Low_complexity Low_complexity 1 31 0 1989 120 21 0 chr5 13444411 13444694 -189640838 - AluSx SINE Alu -23 289 1 337 226 117 29 chr5 13444792 13444929 -189640603 - L1M4 LINE L1 -2881 3265 3117 275 268 118 0 chr5 13444943 13445070 -189640462 - L1M4 LINE L1 -3136 3010 2869 549 259 157 39 chr5 13445441 13445873 -189639659 + L2 LINE L2 2831 3313 0 1955 161 7 0 chr5 13445944 13446249 -189639283 - AluJb SINE Alu -5 307 1 731 211 42 6 chr5 13446959 13447125 -189638407 + MER20 DNA MER1_type 34 205 -14 1714 111 14 18 chr5 13447217 13447496 -189638036 + AluSx SINE Alu 4 281 -31 235 286 104 26 chr5 13447695 13447887 -189637645 + L1ME LINE L1 5679 5885 -236 328 241 13 5 chr5 13448075 13448159 -189637373 + L1ME4a LINE L1 5479 5559 -562 262 297 143 15 chr5 13448247 13448590 -189636942 + L1ME4a LINE L1 5700 6086 -35 988 118 0 0 chr5 13448753 13448888 -189636644 + AluSq/x SINE Alu 1 135 -178 1083 95 0 0 chr5 13448888 13449025 -189636507 + AluSq SINE Alu 50 186 -127 354 61 0 0 chr5 13449150 13449199 -189636333 + (TA)n Simple_repeat Simple_repeat 2 50 0 547 220 46 12 chr5 13449204 13449344 -189636188 - MER31B LTR ERV1 -205 261 2 24 0 0 0 chr5 13450596 13450620 -189634912 + AT_rich Low_complexity Low_complexity 1 24 0 1788 196 25 23 chr5 13450864 13451256 -189634276 + Tigger2a DNA MER2_type 1 393 -41 204 250 0 0 chr5 13451271 13451319 -189634213 + (TA)n Simple_repeat Simple_repeat 1 48 0 543 244 68 99 chr5 13451400 13451724 -189633808 + MER39 LTR ERV1 264 577 -130 * 1128 44 0 7 chr5 13451719 13451855 -189633677 + THE1B LTR MaLR 228 362 -2 367 231 97 8 chr5 13452405 13452539 -189632993 - MER5C DNA MER1_type -164 160 15 22 0 0 0 chr5 13453671 13453693 -189631839 + AT_rich Low_complexity Low_complexity 1 22 0 1530 154 31 18 chr5 13453802 13454088 -189631444 + AluJo SINE Alu 1 290 -22 1838 181 15 52 chr5 13454224 13454628 -189630904 + MLT1B LTR MaLR 1 389 -1 276 30 0 0 chr5 13455158 13455191 -189630341 + (TG)n Simple_repeat Simple_repeat 2 34 0 1202 273 93 21 chr5 13455191 13455620 -189629912 - MLT1E LTR MaLR -24 569 110 211 340 109 13 chr5 13456009 13456165 -189629367 - L2 LINE L2 -1358 1956 1786 322 383 12 12 chr5 13456412 13456579 -189628953 - L2 LINE L2 -221 3051 2885 788 221 120 98 chr5 13456615 13456972 -189628560 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr5 13457188 13457210 -189628322 + AT_rich Low_complexity Low_complexity 1 22 0 2219 149 54 32 chr5 13458164 13458604 -189626928 - MSTA LTR MaLR 0 428 1 503 161 0 0 chr5 13458741 13458828 -189626704 - L1M2 LINE L1 -810 5481 5395 1858 121 10 43 chr5 13458841 13459146 -189626386 + THE1B LTR MaLR 68 362 -2 2315 195 4 16 chr5 13459148 13459655 -189625877 - L1M2 LINE L1 -744 5402 4902 2441 157 40 62 chr5 13459661 13460229 -189625303 + L1MA9 LINE L1 5757 6312 0 1489 190 71 6 chr5 13461278 13461604 -189623928 - MER31A LTR ERV1 -14 471 125 28 29 0 0 chr5 13461606 13461641 -189623891 + AT_rich Low_complexity Low_complexity 1 35 0 601 96 39 28 chr5 13461674 13461852 -189623680 + (TA)n Simple_repeat Simple_repeat 1 180 0 336 120 22 11 chr5 13461868 13461960 -189623572 + (TA)n Simple_repeat Simple_repeat 2 94 0 1447 115 0 0 chr5 13462075 13462292 -189623240 + HERVH LTR ERV1 2771 2987 -4726 883 135 20 0 chr5 13462286 13462434 -189623098 + HERVH LTR ERV1 3140 3290 -4423 * 3261 121 4 6 chr5 13462424 13462927 -189622605 + HERVH LTR ERV1 3492 3993 -3720 4396 142 0 1 chr5 13462929 13463592 -189621940 + HERVH LTR ERV1 4488 5149 -2564 1320 148 19 0 chr5 13463593 13463809 -189621723 + HERVH LTR ERV1 5600 5819 -1894 2368 96 50 13 chr5 13463809 13464185 -189621347 + HERVH LTR ERV1 7324 7713 0 2630 77 119 5 chr5 13464185 13464587 -189620945 + LTR7 LTR ERV1 1 448 -2 901 315 106 21 chr5 13464758 13465145 -189620387 - MLT1G1 LTR MaLR -161 434 15 1040 30 23 8 chr5 13465870 13466003 -189619529 - THE1B LTR MaLR -2 362 228 254 234 28 65 chr5 13465998 13466105 -189619427 - MER39 LTR ERV1 -130 577 475 * 301 280 0 13 chr5 13466320 13466395 -189619137 - L2 LINE L2 0 3313 3240 1390 175 51 22 chr5 13466716 13467012 -189618520 + AluJo SINE Alu 1 304 0 200 321 19 9 chr5 13467371 13467477 -189618055 - L2 LINE L2 -129 3184 3078 9475 188 14 19 chr5 13467477 13469270 -189616262 + LTR33-int LTR ERVL 2985 4768 -255 1054 222 84 53 chr5 13469459 13469815 -189615717 + MLT1C LTR MaLR 45 411 -56 305 274 66 0 chr5 13469811 13469917 -189615615 + LTR33 LTR ERVL 17 129 -392 * 1685 245 49 15 chr5 13470406 13470875 -189614657 + MLT1E3 LTR MaLR 140 624 0 1312 148 0 24 chr5 13471767 13471977 -189613555 + MLT1A1 LTR MaLR 1 205 -160 231 274 62 82 chr5 13472017 13472163 -189613369 - MIR SINE MIR -38 224 82 261 0 0 0 chr5 13472634 13472663 -189612869 + (CA)n Simple_repeat Simple_repeat 1 29 0 219 69 0 0 chr5 13473225 13473254 -189612278 + (CAT)n Simple_repeat Simple_repeat 2 30 0 346 315 88 11 chr5 13473280 13473461 -189612071 + MIR SINE MIR 20 214 -48 6193 125 19 16 chr5 13475580 13476546 -189608986 - LTR5 LTR ERVK 0 969 1 1978 80 278 6 chr5 13476826 13477178 -189608354 + LTR7 LTR ERV1 1 448 -2 17952 88 35 18 chr5 13477180 13479842 -189605690 + HERVH LTR ERV1 1 2706 -5007 311 336 52 0 chr5 13479970 13480086 -189605446 - MIR SINE MIR -71 137 16 561 275 22 14 chr5 13480804 13480942 -189604590 + LTR16A LTR ERVL 110 248 -202 477 241 44 29 chr5 13481401 13481538 -189603994 + LTR16A LTR ERVL 295 433 -17 4523 69 38 3 chr5 13482825 13483827 -189601705 + MER11A LTR ERVK 1 1266 0 24 85 0 0 chr5 13484160 13484219 -189601313 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr5 13485765 13485786 -189599746 + AT_rich Low_complexity Low_complexity 1 21 0 241 243 38 30 chr5 13486291 13486384 -189599148 + MIR SINE MIR 56 151 -57 221 203 20 7 chr5 13487690 13487843 -189597689 + (TA)n Simple_repeat Simple_repeat 1 155 0 224 205 39 0 chr5 13487859 13487937 -189597595 + (TA)n Simple_repeat Simple_repeat 2 82 0 2082 168 139 17 chr5 13487943 13488361 -189597171 - MLT2B1 LTR ERVL -51 469 1 472 251 160 39 chr5 13488773 13489080 -189596452 + L1M4 LINE L1 3052 3395 -2751 21 57 0 0 chr5 13490012 13490047 -189595485 + AT_rich Low_complexity Low_complexity 1 35 0 187 164 33 0 chr5 13490304 13490365 -189595167 + CT-rich Low_complexity Low_complexity 2 64 0 3644 142 9 17 chr5 13490701 13491342 -189594190 - L1PB2 LINE L1 -7 6144 5509 286 338 99 14 chr5 13491487 13491709 -189593823 + MIR SINE MIR 12 252 -10 220 378 44 0 chr5 13493488 13493578 -189591954 + MIR3 SINE MIR 81 174 -34 1630 63 0 0 chr5 13495116 13495322 -189590210 + AluY SINE Alu 99 304 -7 22 56 0 0 chr5 13496050 13496086 -189589446 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr5 13496366 13496401 -189589131 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr5 13496535 13496559 -189588973 + AT_rich Low_complexity Low_complexity 1 24 0 346 251 146 41 chr5 13496602 13497306 -189588226 - L1M4 LINE L1 -1027 5119 4342 958 279 184 14 chr5 13497369 13498079 -189587453 - L1ME3A LINE L1 -1 6169 5331 1290 225 19 3 chr5 13498545 13498852 -189586680 - L1MA9 LINE L1 -136 6176 5865 217 172 31 0 chr5 13499243 13499307 -189586225 + (TA)n Simple_repeat Simple_repeat 1 66 0 642 267 97 49 chr5 13499407 13499815 -189585717 - LTR38 LTR ERV1 -9 547 140 302 292 39 15 chr5 13500271 13500401 -189585131 - LTR38-int LTR ERV1 -449 6227 6095 670 309 46 33 chr5 13501596 13502003 -189583529 - LTR38-int LTR ERV1 -1214 5877 5372 1293 326 36 79 chr5 13502291 13503103 -189582429 - LTR38-int LTR ERV1 -2978 4144 3404 450 351 28 34 chr5 13503539 13503966 -189581566 - LTR38-int LTR ERV1 -1692 3262 2660 1053 45 0 32 chr5 13503967 13504122 -189581410 + (TTCC)n Simple_repeat Simple_repeat 3 152 0 746 128 0 0 chr5 13504125 13504234 -189581298 - AluSq/x SINE Alu -204 109 1 2351 312 52 67 chr5 13504414 13506271 -189579261 - LTR38-int LTR ERV1 -4778 2344 517 665 333 32 21 chr5 13506481 13506878 -189578654 - LTR38-int LTR ERV1 -1730 3224 2636 1053 45 0 32 chr5 13506879 13507034 -189578498 + (TTCC)n Simple_repeat Simple_repeat 3 152 0 630 123 28 0 chr5 13507037 13507143 -189578389 - AluSq/x SINE Alu -204 109 1 322 314 40 9 chr5 13507321 13507532 -189578000 - LTR38-int LTR ERV1 -4778 2975 2208 2137 311 49 49 chr5 13507936 13509222 -189576310 - LTR38-int LTR ERV1 -5384 1738 453 430 249 77 44 chr5 13509189 13509370 -189576162 - LTR38-int LTR ERV1 -1162 624 438 * 2917 142 15 15 chr5 13509370 13509848 -189575684 + MSTA-int LTR MaLR 1082 1559 -21 936 194 104 36 chr5 13509848 13510159 -189575373 + MSTA LTR MaLR 71 428 0 1956 201 27 12 chr5 13510863 13511277 -189574255 - MSTB LTR MaLR -2 424 5 270 223 115 20 chr5 13511905 13512053 -189573479 - Charlie7 DNA MER1_type 0 2612 2451 517 210 4 4 chr5 13512295 13512534 -189572998 + (TA)n Simple_repeat Simple_repeat 1 239 0 263 304 71 36 chr5 13513115 13513283 -189572249 + L1M4b LINE L1 28 201 -6658 2346 233 48 25 chr5 13513962 13514979 -189570553 + L1M4b LINE L1 1007 2143 -4814 464 238 40 0 chr5 13514993 13515119 -189570413 - L1M4 LINE L1 -1278 4868 4738 355 283 17 0 chr5 13515155 13515275 -189570257 - L1M4 LINE L1 -1578 4568 4447 2338 199 106 42 chr5 13515281 13515996 -189569536 + HERVL74 LTR ERVL 1336 2096 -3589 3122 271 38 43 chr5 13516154 13516721 -189568811 + HERVL74 LTR ERVL 2093 2653 -3032 2369 171 14 18 chr5 13516721 13517155 -189568377 - MSTB1 LTR MaLR 0 432 1 3122 271 38 43 chr5 13517155 13517626 -189567906 + HERVL74 LTR ERVL 2653 3125 -2560 217 322 154 7 chr5 13517872 13518021 -189567511 + MIR SINE MIR 17 187 -75 471 146 24 0 chr5 13518159 13518241 -189567291 - MSTB1 LTR MaLR -348 84 1 1300 256 53 55 chr5 13518241 13518714 -189566818 + HERVL74 LTR ERVL 2654 3125 -2560 490 317 78 9 chr5 13518969 13519199 -189566333 + MIR SINE MIR 17 262 0 2347 139 49 7 chr5 13519231 13519640 -189565892 - MSTA LTR MaLR -2 426 1 218 283 108 54 chr5 13519756 13519922 -189565610 - MIR SINE MIR -14 248 74 1891 132 3 14 chr5 13520573 13520861 -189564671 + AluSp SINE Alu 1 285 -28 368 347 62 27 chr5 13521217 13521442 -189564090 + MIR SINE MIR 30 262 0 2677 179 22 89 chr5 13522277 13523018 -189562514 + LTR8 LTR ERV1 1 691 0 455 98 134 12 chr5 13523631 13523713 -189561819 - MER34 LTR ERV1 0 542 451 * 1440 135 30 0 chr5 13523710 13523947 -189561585 + MER4D LTR ERV1 85 328 -575 44 35 0 0 chr5 13524055 13524113 -189561419 + AT_rich Low_complexity Low_complexity 1 58 0 569 318 125 26 chr5 13526064 13526528 -189559004 - L1ME3A LINE L1 -224 5946 5437 352 297 118 25 chr5 13527156 13527545 -189557987 - L1ME3A LINE L1 -236 5934 5499 684 243 130 7 chr5 13528709 13528985 -189556547 - MER5C DNA MER1_type -14 310 1 22 0 0 0 chr5 13530119 13530141 -189555391 + AT_rich Low_complexity Low_complexity 1 22 0 1612 159 21 17 chr5 13530251 13530540 -189554992 + AluJo SINE Alu 1 290 -22 1850 183 12 52 chr5 13530678 13531083 -189554449 + MLT1B LTR MaLR 1 389 -1 276 30 0 0 chr5 13531618 13531651 -189553881 + (TG)n Simple_repeat Simple_repeat 2 34 0 1376 269 74 42 chr5 13531651 13532149 -189553383 - MLT1E LTR MaLR -24 569 56 5606 169 9 3 chr5 13632664 13633647 -189451885 - L1P LINE L1 -3678 2468 1480 2460 107 26 31 chr5 13633648 13634039 -189451493 + L1PA11 LINE L1 5786 6174 0 646 226 16 45 chr5 13634581 13634929 -189450603 + MLT1C LTR MaLR 1 459 -8 2267 84 40 7 chr5 13635668 13635967 -189449565 + AluSp SINE Alu 1 309 -4 1984 95 21 67 chr5 13637531 13637858 -189447674 - AluSx SINE Alu 0 312 1 234 0 0 0 chr5 13638087 13638113 -189447419 + (CA)n Simple_repeat Simple_repeat 2 27 0 195 42 0 0 chr5 13638162 13638186 -189447346 + (CATA)n Simple_repeat Simple_repeat 2 25 0 306 252 76 50 chr5 13638426 13638545 -189446987 + L1ME LINE L1 5324 5445 -676 774 196 0 0 chr5 13638688 13638841 -189446691 + L1P LINE L1 2662 2814 -3332 2257 126 0 0 chr5 13639235 13639545 -189445987 - AluSx SINE Alu -2 310 1 195 42 0 0 chr5 13639550 13639574 -189445958 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 775 165 0 23 chr5 13639586 13639719 -189445813 - FLAM_C SINE Alu -3 130 1 828 168 8 0 chr5 13639750 13639881 -189445651 + FLAM_C SINE Alu 2 133 0 1524 223 50 17 chr5 13639890 13640289 -189445243 - L1ME2 LINE L1 -10 6154 5734 3739 183 44 39 chr5 13640309 13641127 -189444405 - L1MB4 LINE L1 -1 6179 5358 3103 213 62 14 chr5 13641164 13641900 -189443632 - L1ME2 LINE L1 -9 6155 5384 464 167 0 0 chr5 13643256 13643340 -189442192 - MER5A DNA MER1_type -97 92 9 2103 138 0 3 chr5 13643794 13644092 -189441440 - AluJb SINE Alu -15 297 1 2181 129 0 0 chr5 13644247 13644541 -189440991 - AluSx SINE Alu -18 294 1 21 36 0 0 chr5 13644835 13644863 -189440669 + AT_rich Low_complexity Low_complexity 1 28 0 2352 88 10 0 chr5 13644875 13645170 -189440362 - AluSq SINE Alu -15 298 1 2174 136 0 3 chr5 13645170 13645471 -189440061 - AluSx SINE Alu -12 300 1 237 65 0 0 chr5 13645489 13645520 -189440012 + (A)n Simple_repeat Simple_repeat 1 31 0 26 50 0 0 chr5 13645644 13645684 -189439848 + AT_rich Low_complexity Low_complexity 1 40 0 2257 208 46 17 chr5 13645829 13646348 -189439184 - MLT1F LTR MaLR -8 534 1 2369 116 0 0 chr5 13646496 13646807 -189438725 - AluSq SINE Alu -2 311 1 32 57 0 0 chr5 13647320 13647373 -189438159 + AT_rich Low_complexity Low_complexity 1 53 0 400 107 0 0 chr5 13647432 13647488 -189438044 + Alu SINE Alu 2 57 -253 1545 161 0 50 chr5 13647591 13647914 -189437618 - AluSq SINE Alu -6 307 1 949 270 58 52 chr5 13648057 13648420 -189437112 - MLT1I LTR MaLR -5 404 40 2014 136 0 29 chr5 13648950 13649258 -189436274 + AluSx SINE Alu 1 299 -13 353 200 14 0 chr5 13649799 13649869 -189435663 - MER96 DNA MER1_type? -104 71 1 922 173 146 48 chr5 13649909 13650154 -189435378 + MER33 DNA MER1_type 1 281 -2304 1768 144 47 0 chr5 13650154 13650432 -189435100 + AluJb SINE Alu 1 291 -21 922 173 146 48 chr5 13650432 13650481 -189435051 + MER33 DNA MER1_type 281 324 0 2148 152 0 0 chr5 13650510 13650819 -189434713 + AluSx SINE Alu 1 309 -3 560 311 68 7 chr5 13650829 13651109 -189434423 + L1ME4a LINE L1 5288 5584 -658 1000 171 63 15 chr5 13651141 13651346 -189434186 + MER20 DNA MER1_type 1 215 -4 2128 101 7 0 chr5 13651650 13651951 -189433581 + AluSq SINE Alu 5 307 0 1868 163 83 3 chr5 13653075 13653413 -189432119 - MLT1A1 LTR MaLR 0 365 1 1768 67 0 27 chr5 13654165 13654388 -189431144 - AluY SINE Alu -9 302 86 2240 98 0 3 chr5 13654512 13654798 -189430734 + AluSc SINE Alu 11 295 -14 1617 196 54 39 chr5 13654845 13654874 -189430658 - MLT2D LTR ERVL 0 414 387 324 0 0 0 chr5 13654874 13654910 -189430622 + (TG)n Simple_repeat Simple_repeat 2 37 0 1617 196 54 39 chr5 13654910 13655288 -189430244 - MLT2D LTR ERVL -27 387 1 669 170 0 0 chr5 13655347 13655453 -189430079 - FLAM_C SINE Alu -36 107 2 2323 108 3 0 chr5 13655488 13655784 -189429748 + AluSq SINE Alu 1 297 -16 398 335 23 36 chr5 13656158 13656459 -189429073 + L1ME4a LINE L1 5585 5881 -240 2228 121 10 0 chr5 13657168 13657466 -189428066 + AluSq SINE Alu 1 301 -12 449 189 95 0 chr5 13657685 13657780 -189427752 - MLT1A1 LTR MaLR -2 363 260 * 1181 210 18 18 chr5 13657779 13658060 -189427472 - MLT1A1 LTR MaLR -49 316 36 911 317 136 18 chr5 13658097 13659041 -189426491 + L2 LINE L2 2237 3299 -14 1773 286 163 11 chr5 13661552 13662424 -189423108 - L1MC4a LINE L1 -383 7425 6422 606 230 142 13 chr5 13662430 13662656 -189422876 - LTR37B LTR ERV1 -4 464 210 1198 143 36 41 chr5 13662664 13662982 -189422550 + MLT1A2 LTR MaLR 1 363 -11 189 121 0 0 chr5 13663671 13663704 -189421828 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 644 249 35 0 chr5 13664337 13664506 -189421026 - MLT1A1 LTR MaLR -190 175 1 2253 131 0 0 chr5 13664969 13665312 -189420220 - AluSx SINE Alu 0 343 1 601 246 7 0 chr5 13665711 13665853 -189419679 - MER5A DNA MER1_type -40 149 7 194 289 13 26 chr5 13666511 13666587 -189418945 + L2 LINE L2 3230 3304 -9 340 332 40 15 chr5 13667530 13667732 -189417800 - MLT1L LTR MaLR -221 394 188 2364 89 0 3 chr5 13669073 13669364 -189416168 - AluSq SINE Alu -23 290 1 584 136 32 136 chr5 13669365 13669520 -189416012 - AluJo SINE Alu -169 143 5 196 316 152 38 chr5 13669785 13670101 -189415431 - L2 LINE L2 -337 2977 2626 395 182 0 0 chr5 13670181 13670247 -189415285 - AluJb SINE Alu -177 125 60 382 354 125 12 chr5 13670252 13670846 -189414686 - L2 LINE L2 -787 2527 1867 1026 152 20 50 chr5 13671410 13671608 -189413924 - MER39B LTR ERV1 -28 625 434 1112 141 12 0 chr5 13671609 13671779 -189413753 + AluSg/x SINE Alu 137 308 -4 1834 123 155 37 chr5 13671779 13672160 -189413372 - MER39B LTR ERV1 -227 426 1 3706 165 19 15 chr5 13672332 13673049 -189412483 - MER72 LTR ERV1 -1 721 2 2337 98 0 16 chr5 13673652 13673969 -189411563 - AluSx SINE Alu 0 312 1 2361 100 3 0 chr5 13673979 13674280 -189411252 - AluSc SINE Alu -7 302 1 1916 232 44 3 chr5 13674290 13674944 -189410588 - L1MC3 LINE L1 0 7785 7051 276 278 208 17 chr5 13674955 13675128 -189410404 - MIR SINE MIR -56 206 1 2186 131 13 0 chr5 13675339 13675637 -189409895 - AluSx SINE Alu -10 302 1 1669 182 10 26 chr5 13677211 13677513 -189408019 + AluJo SINE Alu 1 297 -15 757 203 13 48 chr5 13677723 13677950 -189407582 + MER20 DNA MER1_type 1 219 0 342 0 0 0 chr5 13678307 13678345 -189407187 + (CA)n Simple_repeat Simple_repeat 2 39 0 251 261 23 51 chr5 13679892 13680068 -189405464 + (CGCGG)n Simple_repeat Simple_repeat 4 174 0 251 261 23 51 chr5 13680233 13680409 -189405123 + (CGCGG)n Simple_repeat Simple_repeat 4 174 0 927 194 0 7 chr5 13680604 13680896 -189404636 + (CAT)n Simple_repeat Simple_repeat 1 290 0 639 181 0 53 chr5 13680900 13681088 -189404444 + (CACCAT)n Simple_repeat Simple_repeat 2 179 0 416 250 276 0 chr5 13681120 13681272 -189404260 - MIR SINE MIR -11 251 58 776 295 86 35 chr5 13681884 13682315 -189403217 + MLT1J LTR MaLR 17 469 -42 485 340 25 0 chr5 13682316 13682475 -189403057 + MIR SINE MIR 5 167 -95 226 234 0 0 chr5 13682566 13682613 -189402919 + (ATG)n Simple_repeat Simple_repeat 2 48 0 1880 162 3 3 chr5 13682778 13683068 -189402464 + AluJb SINE Alu 1 290 -22 714 279 122 20 chr5 13683789 13684083 -189401449 + MER77 LTR ERV1 275 598 -7 1747 113 52 78 chr5 13685125 13685471 -189400061 - MER1B DNA MER1_type 0 337 1 39 60 0 0 chr5 13686854 13686921 -189398611 + AT_rich Low_complexity Low_complexity 1 67 0 277 220 93 34 chr5 13687829 13687947 -189397585 - MIR SINE MIR -115 147 23 354 341 153 27 chr5 13688211 13688545 -189396987 - L2 LINE L2 -416 2898 2523 1105 247 78 13 chr5 13688707 13689079 -189396453 + LTR53 LTR ERVL 94 489 -30 486 181 11 60 chr5 13689137 13689177 -189396355 - MER5A DNA MER1_type -68 110 70 1079 246 68 42 chr5 13689177 13689632 -189395900 + MLT1C LTR MaLR 1 467 0 486 181 11 60 chr5 13689632 13689715 -189395817 - MER5A DNA MER1_type -108 70 4 225 236 47 75 chr5 13691477 13691689 -189393843 + L1MC4a LINE L1 5038 5243 -903 2243 88 58 0 chr5 13691738 13692033 -189393499 + AluSx SINE Alu 1 312 0 368 269 62 56 chr5 13692054 13692214 -189393318 + L1MC4a LINE L1 5287 5447 -2361 451 336 64 26 chr5 13692219 13692531 -189393001 + L1MC4a LINE L1 5505 5828 -1980 223 83 21 42 chr5 13700836 13700884 -189384648 + (CCCCAG)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chr5 13701175 13701204 -189384328 + GC_rich Low_complexity Low_complexity 1 29 0 1364 148 76 0 chr5 13701924 13702160 -189383372 - AluJo SINE Alu -58 254 1 2473 72 3 0 chr5 13702238 13702531 -189383001 - AluSp SINE Alu -19 294 1 2081 170 3 27 chr5 13703003 13703379 -189382153 + MLT2C1 LTR ERVL 1 367 -30 2096 117 3 17 chr5 13703600 13703899 -189381633 + AluSx SINE Alu 1 295 -17 1087 166 47 14 chr5 13704936 13705147 -189380385 - MER20 DNA MER1_type 0 219 2 308 177 29 56 chr5 13705414 13705532 -189380000 + MLT1L LTR MaLR 389 607 -8 432 236 73 48 chr5 13706033 13706198 -189379334 + LTR16C LTR ERVL 300 468 -23 2388 102 0 13 chr5 13707162 13707475 -189378057 - AluSx SINE Alu -3 309 1 1069 186 28 19 chr5 13707589 13707804 -189377728 + MER20 DNA MER1_type 1 217 -2 2282 127 0 0 chr5 13707806 13708114 -189377418 + AluSg SINE Alu 1 308 -2 433 308 58 2 chr5 13708303 13708547 -189376985 - MIR SINE MIR 0 262 8 336 270 58 87 chr5 13709339 13709480 -189376052 + L1MD3 LINE L1 7564 7697 -298 2463 81 7 0 chr5 13709480 13709789 -189375743 + AluSx SINE Alu 1 311 -1 336 270 58 87 chr5 13709789 13709888 -189375644 + L1MD3 LINE L1 7697 7797 -198 1420 199 76 6 chr5 13709936 13710277 -189375255 + MLT1A1 LTR MaLR 1 365 0 274 250 11 65 chr5 13710444 13710536 -189374996 - MIR SINE MIR -52 210 124 222 280 97 0 chr5 13711913 13712006 -189373526 - L2 LINE L2 -12 3260 3159 347 167 0 17 chr5 13712608 13712668 -189372864 - MER20 DNA MER1_type -160 59 1 1862 187 11 11 chr5 13713198 13713562 -189371970 + MLT2D LTR ERVL 6 369 -45 198 0 0 0 chr5 13713598 13713620 -189371912 + (CA)n Simple_repeat Simple_repeat 2 23 0 221 0 0 33 chr5 13713783 13713813 -189371719 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 214 256 39 51 chr5 13715865 13715943 -189369589 + MIR SINE MIR 95 171 -91 227 303 30 15 chr5 13717259 13717325 -189368207 + MIR SINE MIR 26 92 -170 3517 145 55 66 chr5 13717332 13718145 -189367387 - L1MB8 LINE L1 -6 6172 5369 1594 224 46 30 chr5 13718541 13719001 -189366531 + MLT1C LTR MaLR 1 467 0 1887 155 24 0 chr5 13724369 13724665 -189360867 - AluJo SINE Alu -9 303 1 375 268 89 40 chr5 13725049 13725273 -189360259 - L1ME4a LINE L1 -83 6038 5804 13896 117 31 18 chr5 13726487 13728442 -189357090 + Tigger1 DNA MER2_type 6 2067 -351 2196 137 0 13 chr5 13728442 13728757 -189356775 - AluSx SINE Alu -1 311 1 13896 117 31 18 chr5 13728757 13729114 -189356418 + Tigger1 DNA MER2_type 2067 2418 0 3600 168 58 30 chr5 13730865 13731574 -189353958 - L1MB3 LINE L1 -32 6151 5423 302 242 53 0 chr5 13732709 13732804 -189352728 - Charlie5 DNA MER1_type -102 2510 2411 344 243 243 5 chr5 13733050 13733239 -189352293 - L3 LINE CR1 -283 1294 1061 297 75 0 0 chr5 13733655 13733695 -189351837 + (CA)n Simple_repeat Simple_repeat 2 41 0 341 321 78 55 chr5 13733988 13734206 -189351326 - MIR SINE MIR -1 261 39 351 338 63 0 chr5 13734769 13734911 -189350621 + MIR SINE MIR 22 172 -90 279 79 0 0 chr5 13734926 13734964 -189350568 + (CA)n Simple_repeat Simple_repeat 1 38 0 270 293 123 0 chr5 13737049 13737155 -189348377 + MIR SINE MIR 106 224 -38 225 0 0 0 chr5 13738824 13738849 -189346683 + (A)n Simple_repeat Simple_repeat 1 25 0 2296 138 122 9 chr5 13739290 13739716 -189345816 - MER101 LTR ERV1 0 474 1 264 59 0 0 chr5 13739717 13739751 -189345781 + (CCTA)n Simple_repeat Simple_repeat 2 35 0 183 343 14 0 chr5 13741183 13741253 -189344279 - L2 LINE L2 -5 3308 3238 24 0 0 0 chr5 13742106 13742130 -189343402 + AT_rich Low_complexity Low_complexity 1 24 0 352 242 11 11 chr5 13742255 13742350 -189343182 - MER94 DNA DNA 0 134 40 202 304 18 0 chr5 13742699 13742755 -189342777 + L2 LINE L2 3201 3257 -15 1011 232 49 1 chr5 13744655 13744950 -189340582 - MER46C DNA MER2_type -11 327 22 365 240 88 0 chr5 13745580 13745705 -189339827 - MER103 DNA DNA -7 159 24 855 295 33 0 chr5 13746781 13747022 -189338510 - MIR SINE MIR 0 262 14 264 270 5 63 chr5 13748091 13748280 -189337252 + (GTGTG)n Simple_repeat Simple_repeat 1 178 0 243 161 21 140 chr5 13748755 13748848 -189336684 + MER112 DNA MER1_type 2 83 -177 728 169 0 6 chr5 13748851 13749011 -189336521 + (CA)n Simple_repeat Simple_repeat 2 160 0 311 271 0 0 chr5 13749095 13749165 -189336367 + MER112 DNA MER1_type 183 252 -8 311 277 122 34 chr5 13750417 13750565 -189334967 + MER5A DNA MER1_type 20 180 -9 210 345 35 0 chr5 13750842 13750929 -189334603 - MIR SINE MIR -63 145 56 2254 145 26 0 chr5 13752529 13752881 -189332651 + MLT1B LTR MaLR 30 390 0 246 293 0 61 chr5 13753543 13753564 -189331968 + Charlie4 DNA MER1_type 44 65 -1896 330 87 0 0 chr5 13753564 13753610 -189331922 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 246 293 0 61 chr5 13753610 13753687 -189331845 + Charlie4 DNA MER1_type 65 136 -1825 301 284 58 8 chr5 13754076 13754215 -189331317 - MIR SINE MIR -61 147 12 907 230 104 77 chr5 13754681 13755046 -189330486 + Charlie4a DNA MER1_type 2 376 -132 2353 132 43 31 chr5 13755162 13755585 -189329947 + MSTA LTR MaLR 1 428 0 3086 76 25 36 chr5 13756925 13757374 -189328158 + MLT2A1 LTR ERVL 1 444 0 6856 62 7 2 chr5 13757374 13758224 -189327308 + HERVL-A1 LTR ERVL 1 854 -4800 * 19709 72 2 1 chr5 13758223 13760638 -189324894 + HERVL-A1 LTR ERVL 1462 3879 -1775 444 80 93 40 chr5 13760654 13760729 -189324803 + HERVL-A1 LTR ERVL 205 283 -5371 * 1234 72 0 0 chr5 13760726 13760878 -189324654 - HERVL LTR ERVL -2109 3545 3394 * 14079 67 19 8 chr5 13760877 13762649 -189322883 + HERVL-A1 LTR ERVL 3865 5654 0 2866 92 25 10 chr5 13762649 13763042 -189322490 + MLT2A1 LTR ERVL 1 399 -45 390 204 45 9 chr5 13763054 13763165 -189322367 - L1MCa LINE L1 -1339 6983 1995 371 237 54 0 chr5 13763065 13763177 -189322355 + L1MC4 LINE L1 6571 6646 -1139 * 186 324 95 0 chr5 13763882 13763956 -189321576 - MIR SINE MIR -105 103 23 194 208 75 0 chr5 13765005 13765058 -189320474 - MIR SINE MIR -125 137 81 284 291 122 58 chr5 13766297 13766486 -189319046 + MIR SINE MIR 14 214 -48 346 271 205 7 chr5 13766907 13767058 -189318474 + MER5A DNA MER1_type 2 182 -7 374 280 88 102 chr5 13767216 13767738 -189317794 - LTR40b LTR ERVL -2 460 3 182 258 76 91 chr5 13768080 13768278 -189317254 - L2 LINE L2 -808 2506 2312 2137 131 6 50 chr5 13768284 13768644 -189316888 + MER2 DNA MER2_type 1 344 0 200 205 0 0 chr5 13769355 13769394 -189316138 + GA-rich Low_complexity Low_complexity 1 39 0 361 349 47 31 chr5 13770626 13770818 -189314714 + L2 LINE L2 3119 3313 0 344 243 168 23 chr5 13772219 13772392 -189313140 + MLT1L LTR MaLR 178 375 -240 2912 172 61 19 chr5 13772717 13773305 -189312227 - L1MB5 LINE L1 0 6174 5562 2778 161 36 6 chr5 13773333 13773695 -189311837 - L1MB2 LINE L1 -3 6168 5784 474 18 0 0 chr5 13773695 13773750 -189311782 + (TG)n Simple_repeat Simple_repeat 2 56 0 2778 161 36 6 chr5 13773750 13773908 -189311624 - L1MB2 LINE L1 -387 5784 5632 233 280 149 47 chr5 13773989 13774096 -189311436 + MIR3 SINE MIR 88 205 -3 279 159 14 29 chr5 13775387 13775456 -189310076 + Charlie7 DNA MER1_type 83 150 -2462 972 215 85 38 chr5 13775682 13776022 -189309510 + Charlie7 DNA MER1_type 366 721 -1891 475 209 73 47 chr5 13776015 13776206 -189309326 + Charlie7 DNA MER1_type 2417 2612 0 * 1949 177 88 18 chr5 13776407 13776841 -189308691 + MLT1C LTR MaLR 1 464 -3 2238 99 3 3 chr5 13777606 13777918 -189307614 + AluSx SINE Alu 1 312 0 2819 221 67 54 chr5 13778271 13778289 -189307243 + L1MC4 LINE L1 7163 7179 -606 2190 155 52 47 chr5 13778289 13778754 -189306778 + MLT1C LTR MaLR 1 467 0 2819 221 67 54 chr5 13778754 13779463 -189306069 + L1MC4 LINE L1 7179 7641 -144 2261 100 0 0 chr5 13779463 13779773 -189305759 + AluY SINE Alu 1 310 -1 2819 221 67 54 chr5 13779773 13779920 -189305612 + L1MC4 LINE L1 7641 7785 0 1567 278 118 50 chr5 13780132 13780330 -189305202 + L1MCc LINE L1 1012 1195 -5927 297 0 0 0 chr5 13780330 13780363 -189305169 + (CA)n Simple_repeat Simple_repeat 1 33 0 1567 278 118 50 chr5 13780363 13781504 -189304028 + L1MCc LINE L1 1195 2642 -4480 727 204 22 113 chr5 13781504 13781611 -189303921 - MER63A DNA MER1_type -1478 210 134 1723 171 0 7 chr5 13781611 13781903 -189303629 + AluJb SINE Alu 1 290 -22 727 204 22 113 chr5 13781903 13782025 -189303507 - MER63A DNA MER1_type -1554 134 2 1567 278 118 50 chr5 13782025 13782161 -189303371 + L1MCc LINE L1 2642 2767 -4355 232 175 0 0 chr5 13782165 13782205 -189303327 - MER58 DNA MER1_type -3 2417 2378 837 231 29 63 chr5 13782206 13782444 -189303088 - MER82 DNA MER2_type 0 653 424 4205 211 47 75 chr5 13782450 13782795 -189302737 - L1MC4a LINE L1 -551 7257 6904 2092 99 27 0 chr5 13782795 13783089 -189302443 + AluSq SINE Alu 1 302 -11 4205 211 47 75 chr5 13783089 13783467 -189302065 - L1MC4a LINE L1 -904 6904 6517 309 51 0 0 chr5 13783467 13783506 -189302026 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 4205 211 47 75 chr5 13783506 13784102 -189301430 - L1MC4a LINE L1 -1291 6517 5974 427 318 95 14 chr5 13785149 13785360 -189300172 + MIR SINE MIR 18 245 -17 319 273 28 128 chr5 13785365 13785654 -189299878 + MIR SINE MIR 3 262 0 298 272 117 0 chr5 13786439 13786542 -189298990 + MER46C DNA MER2_type 1 115 -223 256 211 135 0 chr5 13786594 13786646 -189298886 + MER46C DNA MER2_type 194 252 -86 2150 108 0 3 chr5 13786865 13787170 -189298362 - AluSx SINE Alu -6 306 3 325 322 54 13 chr5 13787489 13787638 -189297894 + MIR SINE MIR 48 202 -60 3602 191 56 3 chr5 13789354 13790103 -189295429 - L1MB7 LINE L1 -1 6183 5395 321 326 34 7 chr5 13790140 13790287 -189295245 + MER103 DNA DNA 16 166 0 180 0 0 0 chr5 13790287 13790307 -189295225 + (T)n Simple_repeat Simple_repeat 1 20 0 180 344 120 8 chr5 13790421 13790546 -189294986 + MIR SINE MIR 45 183 -79 642 305 147 32 chr5 13791072 13791666 -189293866 - L1MEd LINE L1 -5108 1011 350 1746 178 39 21 chr5 13792111 13792494 -189293038 + MLT1B LTR MaLR 1 390 0 274 200 27 80 chr5 13793106 13793181 -189292351 + MIR SINE MIR 2 72 -136 231 257 0 0 chr5 13793181 13793255 -189292277 + (TG)n Simple_repeat Simple_repeat 1 74 0 563 278 50 22 chr5 13793255 13793435 -189292097 + MIR SINE MIR 78 262 0 252 225 0 70 chr5 13795463 13795534 -189289998 + MLT1D LTR MaLR 44 109 -517 1954 140 48 70 chr5 13795581 13795995 -189289537 + MLT1D LTR MaLR 98 502 -3 267 140 53 18 chr5 13796155 13796212 -189289320 + MLT1J2 LTR MaLR 369 427 -23 1713 167 27 10 chr5 13796408 13796701 -189288831 + AluJb SINE Alu 1 298 -14 2072 122 3 3 chr5 13797822 13798116 -189287416 - AluSq SINE Alu -19 294 1 231 203 47 0 chr5 13798173 13798237 -189287295 + MIR SINE MIR 182 248 -14 21 0 0 0 chr5 13798749 13798770 -189286762 + AT_rich Low_complexity Low_complexity 1 21 0 185 269 0 45 chr5 13799210 13799277 -189286255 - MIR3 SINE MIR -53 155 92 1926 118 15 0 chr5 13799480 13799743 -189285789 + AluSx SINE Alu 34 300 -12 2259 103 0 13 chr5 13800287 13800597 -189284935 - AluSx SINE Alu -6 306 1 29 47 0 0 chr5 13801460 13801503 -189284029 + GC_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr5 13801723 13801753 -189283779 + GC_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr5 13801779 13801802 -189283730 + GC_rich Low_complexity Low_complexity 1 23 0 303 28 0 0 chr5 13801929 13801965 -189283567 + (CGGGGG)n Simple_repeat Simple_repeat 1 36 0 220 283 33 0 chr5 13801965 13802025 -189283507 + G-rich Low_complexity Low_complexity 5 66 0 2473 151 121 29 chr5 13802384 13802939 -189282593 + MER4B LTR ERV1 1 606 -4 575 287 106 56 chr5 13803117 13803618 -189281914 + L2 LINE L2 1755 2280 -1034 226 237 0 51 chr5 13803853 13803912 -189281620 + HsTC2 DNA Tc2 95 150 -1748 779 221 32 40 chr5 13803999 13804248 -189281284 + HsTC2 DNA Tc2 1647 1893 -5 3992 135 44 44 chr5 13804421 13805130 -189280402 + MER50 LTR ERV1 3 711 -23 471 305 60 60 chr5 13805351 13805702 -189279830 + MLT1J LTR MaLR 94 444 -67 584 278 188 39 chr5 13805762 13805908 -189279624 + L2 LINE L2 2791 2914 -399 1739 183 65 3 chr5 13805908 13806231 -189279301 + MER61A LTR ERV1 1 343 0 584 278 188 39 chr5 13806231 13806504 -189279028 + L2 LINE L2 2914 3298 -15 1410 170 0 44 chr5 13807082 13807353 -189278179 - AluSx SINE Alu 0 312 54 325 267 19 29 chr5 13807477 13807582 -189277950 + MIR SINE MIR 84 187 -75 2104 140 81 21 chr5 13808026 13808398 -189277134 + MSTD LTR MaLR 3 396 0 210 224 0 0 chr5 13808627 13808676 -189276856 + (CA)n Simple_repeat Simple_repeat 2 50 0 23 68 0 0 chr5 13809387 13809431 -189276101 + AT_rich Low_complexity Low_complexity 1 44 0 230 272 0 43 chr5 13809464 13809556 -189275976 - L1ME4a LINE L1 -64 6057 5970 568 198 62 68 chr5 13809593 13809770 -189275762 - L1MC3 LINE L1 -362 7423 7248 994 211 0 5 chr5 13810859 13811063 -189274469 + MLT2D LTR ERVL 1 203 -211 287 152 14 0 chr5 13811069 13811143 -189274389 + MLT2D LTR ERVL 321 445 -19 280 98 0 5 chr5 13811148 13811160 -189274372 + MLT2C1 LTR ERVL 358 369 -28 351 0 0 0 chr5 13811160 13811199 -189274333 + (CA)n Simple_repeat Simple_repeat 1 39 0 280 98 0 5 chr5 13811199 13811237 -189274295 + MLT2C1 LTR ERVL 369 395 -2 1105 189 77 6 chr5 13811875 13812198 -189273334 - L1MB1 LINE L1 0 6168 5733 259 226 216 10 chr5 13812670 13812772 -189272760 - L2 LINE L2 -1 3312 3190 926 237 37 0 chr5 13813107 13813322 -189272210 + MER58A DNA MER1_type 1 223 -1 854 208 38 6 chr5 13813331 13813514 -189272018 + MER5A DNA MER1_type 1 189 0 867 245 42 0 chr5 13814787 13814999 -189270533 + MER58A DNA MER1_type 4 224 0 2270 85 0 0 chr5 13815222 13815527 -189270005 - AluY SINE Alu 0 305 1 512 288 45 5 chr5 13816864 13817065 -189268467 + MIR SINE MIR 33 240 -22 527 316 0 37 chr5 13817711 13817898 -189267634 + (CA)n Simple_repeat Simple_repeat 1 180 0 647 265 11 42 chr5 13818087 13818276 -189267256 + MER63A DNA MER1_type 14 196 -14 195 313 52 42 chr5 13819607 13819703 -189265829 - MIR SINE MIR -74 134 38 3733 199 60 7 chr5 13819760 13820515 -189265017 + L1M2b LINE L1 1 795 -6414 27274 80 5 7 chr5 13820520 13821772 -189263760 + L1P LINE L1 31 1284 -4862 2482 72 0 0 chr5 13821772 13822065 -189263467 - AluY SINE Alu -18 293 1 27274 80 5 7 chr5 13822065 13824407 -189261125 + L1P LINE L1 1284 3617 -2529 1875 24 0 0 chr5 13824404 13824613 -189260919 - L1P LINE L1 -1891 4255 4047 * 642 53 0 0 chr5 13824614 13824690 -189260842 - AluY SINE Alu -161 150 75 1006 132 13 0 chr5 13824690 13824842 -189260690 + L1MA5 LINE L1 5514 5667 -636 1161 191 65 0 chr5 13824844 13825059 -189260473 + AluJo SINE Alu 59 287 -25 474 18 0 0 chr5 13825059 13825114 -189260418 + (CA)n Simple_repeat Simple_repeat 2 56 0 3512 155 18 8 chr5 13825115 13825728 -189259804 + L1MA5 LINE L1 5656 6274 -26 390 252 0 10 chr5 13826042 13826145 -189259387 + MIR SINE MIR 54 155 -107 423 163 175 50 chr5 13826246 13826406 -189259126 + MER104 DNA MER2_type 1 180 0 609 194 25 50 chr5 13826726 13826886 -189258646 - MER106B DNA MER1_type 0 1059 904 263 156 22 0 chr5 13826942 13826987 -189258545 - MER106B DNA MER1_type -1012 47 2 1396 131 0 0 chr5 13827882 13828081 -189257451 + AluSg/x SINE Alu 111 309 -3 2248 93 0 0 chr5 13828612 13828890 -189256642 - AluSx SINE Alu -34 278 1 244 343 18 41 chr5 13829472 13829641 -189255891 + MIR SINE MIR 48 212 -50 1269 272 115 29 chr5 13830245 13830609 -189254923 - MLT1L LTR MaLR -5 610 180 1642 187 169 26 chr5 13830609 13830679 -189254853 - MLT2B1 LTR ERVL 0 520 461 180 77 0 0 chr5 13830679 13830705 -189254827 + (TG)n Simple_repeat Simple_repeat 2 27 0 1642 187 169 26 chr5 13830705 13831089 -189254443 - MLT2B1 LTR ERVL -59 461 1 1269 272 115 29 chr5 13831089 13831282 -189254250 - MLT1L LTR MaLR -435 180 5 255 352 0 0 chr5 13831342 13831430 -189254102 - MIR SINE MIR -5 257 170 23 0 0 0 chr5 13831733 13831756 -189253776 + AT_rich Low_complexity Low_complexity 1 23 0 2130 156 18 8 chr5 13832186 13832571 -189252961 + MLT1B LTR MaLR 2 390 0 187 293 43 86 chr5 13832685 13832965 -189252567 + L2 LINE L2 2825 3092 -180 2317 201 122 29 chr5 13832975 13833547 -189251985 + MER50 LTR ERV1 10 654 -80 2234 121 0 0 chr5 13833547 13833852 -189251680 - AluSc SINE Alu -4 305 1 2317 201 122 29 chr5 13833852 13833942 -189251590 + MER50 LTR ERV1 654 734 0 203 176 0 0 chr5 13834878 13834912 -189250620 + T-rich Low_complexity Low_complexity 1 34 0 257 287 90 42 chr5 13835394 13835561 -189249971 - LTR16A1 LTR ERVL -13 444 270 287 190 130 60 chr5 13835765 13835811 -189249721 - MER58C DNA MER1_type -2223 197 156 2183 121 32 27 chr5 13835811 13836184 -189249348 + THE1C LTR MaLR 1 375 0 287 190 130 60 chr5 13836184 13836237 -189249295 - MER58C DNA MER1_type -2264 156 91 1715 257 95 55 chr5 13836283 13836467 -189249065 - L1MC5 LINE L1 -752 7209 7034 1336 201 15 96 chr5 13836467 13836864 -189248668 - MLT1A1 LTR MaLR 0 365 1 1715 257 95 55 chr5 13836864 13837025 -189248507 - L1MC5 LINE L1 -927 7034 6881 2401 139 27 61 chr5 13837025 13837499 -189248033 - L1MB8 LINE L1 0 6178 5721 1715 257 95 55 chr5 13837499 13838673 -189246859 - L1MC5 LINE L1 -1080 6881 5612 1059 192 25 70 chr5 13838713 13838999 -189246533 - L1MC5 LINE L1 -770 7191 6919 526 301 62 49 chr5 13839001 13840001 -189245531 - L1MC5 LINE L1 -743 5403 4431 373 202 219 0 chr5 13840897 13841011 -189244521 - L2 LINE L2 0 3313 3175 940 87 16 0 chr5 13841157 13841284 -189244248 + AluSg/x SINE Alu 174 302 -8 633 232 10 63 chr5 13841671 13841878 -189243654 - L2 LINE L2 -427 2887 2692 330 236 34 22 chr5 13841911 13842000 -189243532 - MIR SINE MIR -150 112 23 22 56 0 0 chr5 13842042 13842078 -189243454 + AT_rich Low_complexity Low_complexity 1 36 0 209 286 98 90 chr5 13842143 13842276 -189243256 - L2 LINE L2 -1 3271 3138 196 228 0 70 chr5 13843528 13843585 -189241947 - L2 LINE L2 0 3313 3261 2323 91 3 0 chr5 13844024 13844321 -189241211 - AluSp SINE Alu -15 298 1 14584 116 25 8 chr5 13844924 13847131 -189238401 + Tigger1 DNA MER2_type 1 2242 -176 2483 74 0 0 chr5 13847131 13847429 -189238103 + AluY SINE Alu 1 298 -13 14584 116 25 8 chr5 13847429 13847609 -189237923 + Tigger1 DNA MER2_type 2242 2418 0 259 233 0 33 chr5 13847617 13847677 -189237855 + HsTC2 DNA Tc2 33 90 -1808 221 319 77 0 chr5 13848236 13848327 -189237205 - L2 LINE L2 -12 3260 3163 23 33 0 0 chr5 13849308 13849338 -189236194 + AT_rich Low_complexity Low_complexity 1 30 0 2163 118 0 0 chr5 13850256 13850545 -189234987 - AluSx SINE Alu -2 310 22 352 250 5 162 chr5 13851785 13852001 -189233531 - MIR3 SINE MIR -8 200 19 23386 177 29 22 chr5 13852475 13858647 -189226885 + L1PA11 LINE L1 287 6486 -3 199 315 212 7 chr5 13859191 13859337 -189226195 - MIR3 SINE MIR -8 200 25 788 163 105 17 chr5 13859442 13859614 -189225918 + MER20 DNA MER1_type 33 219 0 567 321 83 18 chr5 13859630 13859848 -189225684 + MIR SINE MIR 28 259 -3 18307 197 15 12 chr5 13859879 13864466 -189221066 - L1PA13 LINE L1 -1374 5423 808 6231 216 41 29 chr5 13864569 13866006 -189219526 - L1PA13 LINE L1 -5333 1454 1 278 282 66 18 chr5 13866081 13866308 -189219224 - HAL1 LINE L1 -1385 1122 885 5153 176 14 7 chr5 13866311 13867357 -189218175 + L1 LINE L1 786 5403 -743 1052 235 238 8 chr5 13867616 13867994 -189217538 + LTR50 LTR ERVL 1 465 -330 1863 230 126 26 chr5 13868052 13868591 -189216941 + MLT1E LTR MaLR 1 593 0 437 332 92 18 chr5 13868625 13868908 -189216624 - L1MEd LINE L1 -5758 361 58 289 296 130 0 chr5 13869908 13870016 -189215516 - MIR SINE MIR -70 192 71 3608 162 30 2 chr5 13870075 13870681 -189214851 - L1PB4 LINE L1 -5 6151 5529 1086 213 79 136 chr5 13870983 13871527 -189214005 - L1ME3A LINE L1 -5 6165 5653 21 57 0 0 chr5 13871755 13871790 -189213742 + AT_rich Low_complexity Low_complexity 1 35 0 2247 109 3 0 chr5 13871797 13872091 -189213441 + AluSx SINE Alu 1 295 -17 257 51 26 0 chr5 13872091 13872130 -189213402 + (TA)n Simple_repeat Simple_repeat 2 41 0 2367 95 10 0 chr5 13872311 13872616 -189212916 - AluSx SINE Alu -4 308 1 529 321 71 12 chr5 13873484 13873724 -189211808 + MIR SINE MIR 7 260 -2 859 227 54 111 chr5 13873825 13874195 -189211337 - MLT1A2 LTR MaLR -3 371 23 203 271 24 47 chr5 13874334 13874419 -189211113 - MIR SINE MIR -74 134 52 1518 171 60 21 chr5 13875427 13875708 -189209824 - AluJo SINE Alu -8 304 13 270 318 0 0 chr5 13875752 13875837 -189209695 - MIR SINE MIR -6 256 172 2396 92 3 0 chr5 13876893 13877196 -189208336 + AluSp SINE Alu 1 304 -9 1700 120 0 0 chr5 13977599 13977833 -189107699 + AluSx SINE Alu 63 296 -16 290 289 12 0 chr5 13977987 13978070 -189107462 - MER81 DNA DNA -29 85 2 227 291 45 62 chr5 13978234 13978413 -189107119 - L1MC/D LINE L1 -1979 5829 5654 * 2152 256 56 21 chr5 13978408 13978971 -189106561 - L1ME LINE L1 -348 5816 5197 1869 179 19 16 chr5 13978971 13979335 -189106197 + MLT1A1 LTR MaLR 1 365 0 2152 256 56 21 chr5 13979335 13979752 -189105780 - L1ME LINE L1 -967 5197 4796 385 270 55 98 chr5 13982127 13982192 -189103340 - MER110 LTR ERV1 -4 487 421 2352 199 26 59 chr5 13982192 13982764 -189102768 - MLT2B3 LTR ERVL 0 554 2 385 270 55 98 chr5 13982764 13983005 -189102527 - MER110 LTR ERV1 -70 421 194 347 243 171 7 chr5 13983102 13983242 -189102290 - MER110A LTR ERV1 -298 170 8 276 330 103 27 chr5 13983429 13983574 -189101958 - MIR SINE MIR -13 249 86 1636 179 127 21 chr5 13983574 13983992 -189101540 + MER31B LTR ERV1 5 466 0 276 330 103 27 chr5 13983992 13984031 -189101501 - MIR SINE MIR -176 86 51 183 218 0 0 chr5 13984816 13984871 -189100661 + (TTCA)n Simple_repeat Simple_repeat 4 58 0 3032 131 51 29 chr5 13985174 13985760 -189099772 + L1MA8 LINE L1 5690 6288 -3 794 191 125 0 chr5 13987259 13987427 -189098105 - MER20 DNA MER1_type 0 219 31 452 249 52 58 chr5 13987604 13987777 -189097755 - MER5B DNA MER1_type -3 175 4 1761 76 0 5 chr5 13987990 13988214 -189097318 + AluSp SINE Alu 85 307 -6 1012 239 56 54 chr5 13988512 13989012 -189096520 + L1MEc LINE L1 2100 2546 -3669 3429 41 4 82 chr5 13989179 13989665 -189095867 + L1PA7 LINE L1 5707 6154 0 294 279 54 0 chr5 13989668 13989797 -189095735 + L1MDa LINE L1 2305 2440 -4100 2121 104 7 0 chr5 13990540 13990818 -189094714 + AluSq SINE Alu 4 283 -30 207 100 0 0 chr5 13991343 13991373 -189094159 + (T)n Simple_repeat Simple_repeat 1 30 0 409 188 46 151 chr5 13991643 13991861 -189093671 - MIR SINE MIR -10 252 58 478 196 20 72 chr5 13991892 13991948 -189093584 + L1MDa LINE L1 2734 2791 -3749 2403 129 22 0 chr5 13991948 13992304 -189093228 - THE1B LTR MaLR 0 364 1 478 196 20 72 chr5 13992304 13992400 -189093132 + L1MDa LINE L1 2791 2878 -3662 277 247 286 0 chr5 13992543 13992697 -189092835 - MIR SINE MIR -15 247 50 284 349 88 5 chr5 13992800 13992992 -189092540 - MIR SINE MIR -8 254 47 1545 206 142 5 chr5 13993228 13993664 -189091868 - LTR54B LTR ERV1 -2 496 1 467 221 68 55 chr5 13993934 13993978 -189091554 - L1ME3A LINE L1 -8 6162 6120 2383 121 11 35 chr5 13993978 13994351 -189091181 - THE1B LTR MaLR 0 364 1 467 221 68 55 chr5 13994351 13994469 -189091063 - L1ME3A LINE L1 -50 6120 5998 2350 86 7 0 chr5 13995376 13995666 -189089866 + AluSc SINE Alu 1 292 -17 1889 184 28 31 chr5 13996195 13996586 -189088946 + MLT1B LTR MaLR 1 390 0 186 43 0 0 chr5 13996854 13996877 -189088655 + (TTG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr5 13996943 13996964 -189088568 + AT_rich Low_complexity Low_complexity 1 21 0 541 157 17 0 chr5 13997112 13997227 -189088305 + (TA)n Simple_repeat Simple_repeat 1 117 0 207 0 0 0 chr5 13999336 13999359 -189086173 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 479 311 68 0 chr5 13999938 14000099 -189085433 + MIR SINE MIR 35 206 -56 909 108 23 0 chr5 14000104 14000234 -189085298 - AluSq/x SINE Alu -179 133 1 2120 117 0 41 chr5 14000238 14000555 -189084977 - AluSg SINE Alu -6 304 1 377 234 52 73 chr5 14001169 14001361 -189084171 + L2 LINE L2 3126 3313 0 1889 108 7 54 chr5 14002029 14002171 -189083361 - MLT2A2 LTR ERVL -170 283 161 2010 134 28 0 chr5 14002171 14002462 -189083070 + AluSx SINE Alu 1 299 -13 1889 108 7 54 chr5 14002462 14002616 -189082916 - MLT2A2 LTR ERVL -292 161 1 1677 179 100 39 chr5 14003234 14003643 -189081889 - Tigger2a DNA MER2_type 0 434 1 296 347 92 34 chr5 14004453 14004715 -189080817 - L2 LINE L2 -2 3270 2994 475 302 157 15 chr5 14005147 14005415 -189080117 - L2 LINE L2 -3 3310 3005 239 217 0 0 chr5 14005447 14005493 -189080039 - L2 LINE L2 -660 2654 2609 1502 160 81 138 chr5 14006359 14006852 -189078680 + MER4C LTR ERV1 1 465 0 21 57 0 0 chr5 14006884 14006919 -189078613 + AT_rich Low_complexity Low_complexity 1 35 0 202 350 67 17 chr5 14009685 14009805 -189075727 - L2 LINE L2 0 3272 3147 328 283 43 0 chr5 14009836 14009928 -189075604 + MIR SINE MIR 59 154 -108 276 338 114 27 chr5 14009945 14010164 -189075368 + L3 LINE CR1 1259 1496 -81 261 309 73 44 chr5 14010260 14010396 -189075136 - L2 LINE L2 -5 3308 3169 22 0 0 0 chr5 14010744 14010766 -189074766 + AT_rich Low_complexity Low_complexity 1 22 0 192 77 0 0 chr5 14010794 14010820 -189074712 + (TTTAA)n Simple_repeat Simple_repeat 5 30 0 405 272 112 42 chr5 14012174 14012558 -189072974 + L1MB2 LINE L1 3566 3980 -2166 281 300 49 38 chr5 14012744 14013011 -189072521 + L1MB2 LINE L1 4110 4379 -1767 236 287 50 30 chr5 14013015 14013116 -189072416 - L1ME3A LINE L1 -88 6082 5980 1520 151 52 66 chr5 14013178 14013272 -189072260 + AluJo SINE Alu 1 95 -217 2375 133 30 25 chr5 14013272 14013634 -189071898 + THE1B LTR MaLR 1 364 0 1520 151 52 66 chr5 14013634 14013844 -189071688 + AluJo SINE Alu 95 301 -11 267 316 46 17 chr5 14013901 14014075 -189071457 - L1ME3A LINE L1 -248 5922 5744 813 164 0 15 chr5 14014721 14014855 -189070677 + FLAM_A SINE Alu 2 133 0 30 27 0 0 chr5 14015039 14015076 -189070456 + AT_rich Low_complexity Low_complexity 1 37 0 325 279 122 34 chr5 14015266 14015413 -189070119 + L1MB2 LINE L1 5338 5497 -681 394 212 50 10 chr5 14015419 14015518 -189070014 + L1MB2 LINE L1 5559 5661 -460 379 309 208 10 chr5 14015549 14015756 -189069776 + MIR SINE MIR 14 261 -1 592 288 211 3 chr5 14016284 14016635 -189068897 - L2 LINE L2 -22 3291 2868 * 1088 262 149 19 chr5 14016632 14017163 -189068369 - L2 LINE L2 -1203 2111 1512 189 310 0 0 chr5 14017229 14017287 -189068245 + MER5B DNA MER1_type 36 93 -85 505 160 160 0 chr5 14017720 14017820 -189067712 - MLT1A1 LTR MaLR -78 287 172 1975 168 48 0 chr5 14018072 14018423 -189067109 + L1MB2 LINE L1 5802 6169 -2 198 303 0 0 chr5 14018427 14018516 -189067016 + A-rich Low_complexity Low_complexity 1 89 0 * 886 123 11 22 chr5 14018506 14018685 -189066847 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 352 205 9 18 chr5 14019727 14019839 -189065693 + (TATG)n Simple_repeat Simple_repeat 1 111 0 256 220 0 0 chr5 14019842 14019892 -189065640 + MER4-int LTR ERV1 1111 1160 -5438 350 303 99 7 chr5 14020717 14020859 -189064673 - MIR SINE MIR -70 192 38 205 235 39 0 chr5 14022535 14022586 -189062946 - L2 LINE L2 0 3313 3261 2435 59 0 0 chr5 14022665 14022952 -189062580 + AluY SINE Alu 1 287 -24 415 13 13 53 chr5 14022955 14023031 -189062501 + (TAAAA)n Simple_repeat Simple_repeat 2 74 0 1629 152 99 9 chr5 14023682 14024005 -189061527 - L1MA8 LINE L1 -5 6286 5935 688 233 34 45 chr5 14027123 14027299 -189058233 + MER5B DNA MER1_type 2 175 -3 2089 101 11 4 chr5 14027404 14027681 -189057851 + AluSq SINE Alu 1 279 -34 641 143 20 10 chr5 14028556 14028654 -189056878 + AluJb SINE Alu 195 293 -19 257 259 133 30 chr5 14029151 14029286 -189056246 - L3 LINE CR1 -53 1524 1376 327 243 107 14 chr5 14030377 14030517 -189055015 - L3 LINE CR1 -205 1372 1220 2005 137 0 0 chr5 14030614 14030921 -189054611 + L1P3 LINE L1 1351 1657 -4804 7566 55 7 0 chr5 14030924 14032568 -189052964 + L1PA6 LINE L1 4504 6153 -1 1629 278 88 14 chr5 14033112 14033840 -189051692 - L1MEc LINE L1 -3255 2960 2179 28 0 0 0 chr5 14034201 14034229 -189051303 + AT_rich Low_complexity Low_complexity 1 28 0 906 296 85 44 chr5 14034301 14035140 -189050392 - L1MEc LINE L1 -4733 1663 791 262 224 41 61 chr5 14035308 14035406 -189050126 - L1MEc LINE L1 -5737 468 373 524 234 30 85 chr5 14035630 14035831 -189049701 - MLT1C LTR MaLR -275 192 3 4384 74 7 0 chr5 14036172 14036725 -189048807 + HERVL LTR ERVL 4018 4574 -1080 1150 141 0 0 chr5 14036731 14036901 -189048631 - LTR45B LTR ERV1 -319 170 1 203 310 14 0 chr5 14037225 14037296 -189048236 + CT-rich Low_complexity Low_complexity 4 75 0 482 298 137 0 chr5 14037441 14037602 -189047930 - MER5A DNA MER1_type -3 186 4 180 354 0 0 chr5 14038816 14038864 -189046668 - L2 LINE L2 -4 3268 3221 28 0 0 0 chr5 14041176 14041204 -189044328 + AT_rich Low_complexity Low_complexity 1 28 0 182 222 28 0 chr5 14041795 14041831 -189043701 + L3b LINE CR1 1439 1475 -108 2126 112 0 25 chr5 14041834 14042148 -189043384 + AluSx SINE Alu 3 308 -4 393 274 47 0 chr5 14042921 14043027 -189042505 - L2 LINE L2 0 3313 3203 263 295 54 27 chr5 14043437 14043586 -189041946 + L1ME2 LINE L1 6009 6161 -5 452 298 93 27 chr5 14043668 14043893 -189041639 - MIR SINE MIR -13 249 10 2462 67 0 0 chr5 14044230 14044529 -189041003 - AluY SINE Alu -12 299 1 5381 145 7 61 chr5 14045839 14045952 -189039580 + MER49 LTR ERV1 1 118 -805 5457 53 5 2 chr5 14045952 14046593 -189038939 + L1PA8 LINE L1 5526 6168 -4 5381 145 7 61 chr5 14046593 14047434 -189038098 + MER49 LTR ERV1 118 905 -18 2413 44 3 7 chr5 14047434 14047728 -189037804 - AluY SINE Alu -18 293 1 5381 145 7 61 chr5 14047728 14047744 -189037788 + MER49 LTR ERV1 905 920 -3 200 215 32 21 chr5 14047754 14047847 -189037685 + CT-rich Low_complexity Low_complexity 3 96 0 182 337 22 45 chr5 14049039 14049128 -189036404 - L2 LINE L2 -18 3254 3168 2549 129 22 0 chr5 14049263 14049619 -189035913 - THE1B LTR MaLR 0 364 1 1877 236 47 2 chr5 14051063 14051534 -189033998 - MLT1D LTR MaLR -7 498 7 1996 144 0 10 chr5 14052416 14052708 -189032824 + AluSx SINE Alu 5 293 -19 320 271 135 29 chr5 14053478 14053648 -189031884 - MLT1K LTR MaLR -26 562 375 603 312 51 38 chr5 14053726 14053963 -189031569 - MLT1K LTR MaLR -342 246 7 1427 194 90 15 chr5 14054563 14054898 -189030634 - MLT1A1 LTR MaLR 0 365 6 620 279 124 13 chr5 14054905 14055203 -189030329 - L1MEc LINE L1 -6017 379 49 308 272 67 67 chr5 14055448 14055643 -189029889 + LTR67 LTR ERVL 70 264 -293 2139 150 109 10 chr5 14055658 14056051 -189029481 - MSTB1 LTR MaLR 0 432 1 423 267 17 17 chr5 14057441 14057557 -189027975 - MIR3 SINE MIR -27 181 66 2015 176 16 11 chr5 14057557 14057920 -189027612 + MLT1A1 LTR MaLR 1 365 0 3873 88 13 2 chr5 14057970 14058502 -189027030 + L1PB1 LINE L1 5610 6147 -4 377 248 23 38 chr5 14058940 14059073 -189026459 + L3 LINE CR1 901 1031 -546 202 323 169 10 chr5 14059074 14059275 -189026257 + L3 LINE CR1 1343 1575 -2 401 253 79 42 chr5 14059291 14059481 -189026051 + MIR SINE MIR 59 255 -7 362 284 113 7 chr5 14059657 14059798 -189025734 + MLT1K LTR MaLR 376 531 -57 434 266 76 13 chr5 14060650 14060808 -189024724 - LTR52 LTR ERVL 0 421 254 475 210 94 22 chr5 14060881 14061019 -189024513 - MLT1C LTR MaLR -314 153 6 1992 189 16 13 chr5 14061517 14061893 -189023639 - MLT1B LTR MaLR -13 377 1 2180 99 7 0 chr5 14062377 14062661 -189022871 + AluSq SINE Alu 26 311 -2 1755 192 149 11 chr5 14062727 14063170 -189022362 + MLT1D LTR MaLR 1 504 -1 637 165 0 0 chr5 14063876 14063991 -189021541 - L1MB1 LINE L1 -1465 4681 4567 4935 165 25 27 chr5 14063995 14064907 -189020625 + L1MB1 LINE L1 4697 5610 -558 2272 110 48 28 chr5 14064907 14065262 -189020270 + THE1B LTR MaLR 3 364 0 4935 165 25 27 chr5 14065262 14065458 -189020074 + L1MB1 LINE L1 5610 5805 -363 795 195 87 0 chr5 14065458 14065607 -189019925 + FAM SINE Alu 2 163 -12 4935 165 25 27 chr5 14065607 14065965 -189019567 + L1MB1 LINE L1 5805 6159 -9 1787 203 47 19 chr5 14066041 14066465 -189019067 - MER63B DNA MER1_type 0 436 1 26 30 0 0 chr5 14066623 14066656 -189018876 + AT_rich Low_complexity Low_complexity 1 33 0 430 179 143 9 chr5 14066787 14066899 -189018633 + MER53 DNA DNA 1 127 -62 2316 107 13 0 chr5 14066907 14067207 -189018325 + AluSp SINE Alu 1 304 -9 2294 134 180 53 chr5 14067310 14067463 -189018069 + LTR18B LTR ERVL 1 133 -481 2214 108 0 10 chr5 14067463 14067758 -189017774 - AluSq SINE Alu -21 292 1 2294 134 180 53 chr5 14067758 14068149 -189017383 + LTR18B LTR ERVL 133 614 0 272 253 69 0 chr5 14069492 14069579 -189015953 - MLT1L LTR MaLR -155 460 368 629 272 156 82 chr5 14069794 14070346 -189015186 + MLT1G1 LTR MaLR 1 593 -2 2390 79 7 0 chr5 14071109 14071401 -189014131 - AluSp SINE Alu -19 294 1 430 205 0 0 chr5 14072668 14072751 -189012781 - MER5A DNA MER1_type -98 91 9 677 234 86 11 chr5 14072806 14072981 -189012551 + MER5A DNA MER1_type 1 188 -1 701 203 0 0 chr5 14073079 14073237 -189012295 - FLAM_A SINE Alu 0 133 3 954 217 14 27 chr5 14073561 14073782 -189011750 + MER20 DNA MER1_type 2 219 0 495 295 78 0 chr5 14074585 14074802 -189010730 - MER46C DNA MER2_type -21 317 84 210 133 67 22 chr5 14076180 14076270 -189009262 + (TCTA)n Simple_repeat Simple_repeat 3 96 0 201 129 0 0 chr5 14077583 14077614 -189007918 + (CA)n Simple_repeat Simple_repeat 2 32 0 1747 168 55 26 chr5 14079068 14079450 -189006082 - L1MB4 LINE L1 -1 6179 5787 325 204 126 68 chr5 14079450 14079553 -189005979 + L1PB4 LINE L1 6045 6153 -3 * 821 153 0 21 chr5 14079545 14079689 -189005843 - L1MB4 LINE L1 -374 5806 5666 213 94 0 0 chr5 14080594 14080626 -189004906 + (TCCA)n Simple_repeat Simple_repeat 2 33 0 430 259 23 30 chr5 14080638 14080769 -189004763 - MIR SINE MIR -118 144 15 1152 176 5 0 chr5 14082078 14082266 -189003266 + MER5A DNA MER1_type 1 189 0 2007 159 0 0 chr5 14082636 14082931 -189002601 - AluJb SINE Alu -17 295 1 6893 54 15 3 chr5 14084879 14086249 -188999283 + L1PA7 LINE L1 4788 6169 0 273 242 0 105 chr5 14086339 14086434 -188999098 - MER5A DNA MER1_type -96 93 9 240 59 0 0 chr5 14086765 14086799 -188998733 + (CA)n Simple_repeat Simple_repeat 2 35 0 3786 145 22 16 chr5 14087790 14088473 -188997059 + L1MA4 LINE L1 5606 6292 -8 296 311 95 48 chr5 14088812 14089191 -188996341 + L2 LINE L2 2581 2977 -337 227 249 50 138 chr5 14089230 14089491 -188996041 + L2 LINE L2 3076 3313 0 2221 106 0 0 chr5 14089970 14090302 -188995230 + AluSx SINE Alu 1 332 0 234 156 0 0 chr5 14091098 14091143 -188994389 + (CCA)n Simple_repeat Simple_repeat 1 45 0 376 108 18 63 chr5 14092794 14092905 -188992627 + (TCCCC)n Simple_repeat Simple_repeat 2 107 0 236 157 39 20 chr5 14093766 14093817 -188991715 + CT-rich Low_complexity Low_complexity 5 56 0 205 333 104 9 chr5 14094514 14094631 -188990901 + MER5A DNA MER1_type 1 138 -51 203 308 19 67 chr5 14095111 14095215 -188990317 + MER5B DNA MER1_type 5 103 -75 2151 107 0 0 chr5 14097085 14097396 -188988136 - AluSx SINE Alu 0 312 1 367 176 10 88 chr5 14098537 14098639 -188986893 - L1ME4a LINE L1 -62 6059 5966 289 203 236 32 chr5 14098654 14098777 -188986755 - HAL1 LINE L1 0 2507 2360 261 206 0 63 chr5 14099473 14099662 -188985870 + G-rich Low_complexity Low_complexity 2 178 0 1187 280 134 57 chr5 14099999 14101421 -188984111 - L2 LINE L2 -705 2609 1065 295 277 79 98 chr5 14101532 14101774 -188983758 - L2 LINE L2 -2784 530 298 2274 116 0 0 chr5 14101774 14102075 -188983457 - AluSc SINE Alu -8 301 1 295 277 79 98 chr5 14102075 14102262 -188983270 - L2 LINE L2 -3016 298 109 2429 84 0 0 chr5 14102490 14102787 -188982745 + AluSc SINE Alu 1 297 -12 1724 158 66 39 chr5 14103809 14104144 -188981388 - MER2 DNA MER2_type 0 344 1 2311 95 0 0 chr5 14105419 14105713 -188979819 + AluSg SINE Alu 1 294 -16 545 208 20 67 chr5 14105969 14106118 -188979414 - MER5B DNA MER1_type -36 142 1 266 286 176 8 chr5 14106576 14106695 -188978837 + L2 LINE L2 3132 3270 -2 2159 108 19 32 chr5 14109660 14109975 -188975557 + AluSp SINE Alu 1 311 -2 824 304 113 50 chr5 14110256 14111053 -188974479 - L2 LINE L2 -213 3059 2196 783 52 21 0 chr5 14111056 14111152 -188974380 + L1PA7 LINE L1 6056 6153 -1 302 248 47 54 chr5 14111454 14111583 -188973949 + MLT1J1 LTR MaLR 39 166 -280 358 245 44 57 chr5 14111599 14111758 -188973774 + MLT1J2 LTR MaLR 268 424 -26 21 36 0 0 chr5 14112138 14112166 -188973366 + AT_rich Low_complexity Low_complexity 1 28 0 189 378 0 0 chr5 14112263 14112345 -188973187 + L2 LINE L2 3232 3313 0 244 299 13 39 chr5 14113134 14113211 -188972321 + MLT1J LTR MaLR 203 277 -234 1600 187 17 43 chr5 14113344 14113691 -188971841 + MLT1D LTR MaLR 2 339 -166 622 227 68 0 chr5 14114120 14114283 -188971249 + MER69A DNA AcHobo 1 174 -3 2225 118 0 10 chr5 14116382 14116695 -188968837 - AluSx SINE Alu -2 310 1 198 0 0 0 chr5 14117160 14117182 -188968350 + (ATG)n Simple_repeat Simple_repeat 2 23 0 274 224 13 26 chr5 14117806 14117882 -188967650 - MIR SINE MIR -138 124 50 467 383 17 0 chr5 14117914 14118144 -188967388 + L3 LINE CR1 950 1183 -394 976 190 79 129 chr5 14118153 14118659 -188966873 + MER39 LTR ERV1 1 707 0 484 337 103 16 chr5 14118662 14118914 -188966618 + L3 LINE CR1 1206 1479 -98 1187 182 117 5 chr5 14121189 14121403 -188964129 - MER8 DNA MER2_type 0 239 2 2031 114 3 23 chr5 14121956 14122255 -188963277 - AluSx SINE Alu -19 293 1 327 314 0 0 chr5 14122721 14122823 -188962709 - L1MC4 LINE L1 -1348 6694 6593 4722 136 14 8 chr5 14123280 14123886 -188961646 + Tigger1 DNA MER2_type 144 756 -1662 2409 77 7 0 chr5 14123886 14124185 -188961347 - AluSg SINE Alu -9 301 1 4722 136 14 8 chr5 14124185 14124301 -188961231 + Tigger1 DNA MER2_type 756 870 -1548 581 172 0 0 chr5 14124298 14124391 -188961141 + Tigger1 DNA MER2_type 2326 2418 0 * 215 178 22 0 chr5 14125408 14125453 -188960079 + (TA)n Simple_repeat Simple_repeat 1 46 0 468 247 65 49 chr5 14128358 14128550 -188956982 + MIR SINE MIR 62 262 0 2165 129 10 0 chr5 14131526 14131835 -188953697 - AluSx SINE Alu 0 312 1 850 93 0 9 chr5 14132378 14132485 -188953047 + U6 snRNA snRNA 1 106 -1 204 40 0 0 chr5 14132781 14132806 -188952726 + (TG)n Simple_repeat Simple_repeat 2 26 0 2295 166 58 32 chr5 14133547 14133889 -188951643 - L1MB2 LINE L1 -2 6169 5808 1798 172 3 3 chr5 14133889 14134185 -188951347 - AluSx SINE Alu -14 298 3 2295 166 58 32 chr5 14134185 14134341 -188951191 - L1MB2 LINE L1 -363 5808 5658 12544 157 43 28 chr5 14134344 14136703 -188948829 - L1M4c LINE L1 -3884 2500 100 2145 220 30 65 chr5 14136703 14137275 -188948257 + MLT2B3 LTR ERVL 1 552 -2 12544 157 43 28 chr5 14137275 14137361 -188948171 - L1M4c LINE L1 -6284 100 17 1584 235 201 4 chr5 14137842 14138305 -188947227 + L1MD2 LINE L1 5793 6346 -13 2039 117 0 4 chr5 14138727 14139001 -188946531 + AluSg SINE Alu 1 273 -37 240 35 0 0 chr5 14139005 14139034 -188946498 + (CAA)n Simple_repeat Simple_repeat 1 29 0 2364 8 0 0 chr5 14140054 14140302 -188945230 - L1PA3 LINE L1 -4 6151 5904 1954 209 41 53 chr5 14140302 14140809 -188944723 - MLT1D LTR MaLR -4 501 1 1492 130 126 15 chr5 14141606 14141867 -188943665 - AluSg1 SINE Alu -19 290 1 256 205 26 111 chr5 14142663 14142780 -188942752 + MER31-int LTR ERV1 3334 3440 -1496 2225 151 3 26 chr5 14143370 14143715 -188941817 + MER1B DNA MER1_type 1 337 0 279 79 0 0 chr5 14144250 14144288 -188941244 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 2124 134 3 3 chr5 14144958 14145264 -188940268 + AluSx SINE Alu 1 306 -6 1338 112 0 0 chr5 14145270 14145449 -188940083 + AluSg/x SINE Alu 129 307 -5 384 180 29 151 chr5 14147027 14147199 -188938333 - MER103 DNA DNA -1 165 15 186 43 0 0 chr5 14149720 14149743 -188935789 + (TA)n Simple_repeat Simple_repeat 1 23 0 487 248 141 27 chr5 14150135 14150284 -188935248 - MLT1D LTR MaLR -3 464 337 2349 176 36 7 chr5 14150332 14150747 -188934785 - MSTB1 LTR MaLR 0 432 6 867 225 28 51 chr5 14150757 14151010 -188934522 - MLT1D LTR MaLR -258 247 1 2329 179 60 18 chr5 14151249 14151696 -188933836 + MLT1C LTR MaLR 2 467 0 23 0 0 0 chr5 14151906 14151929 -188933603 + AT_rich Low_complexity Low_complexity 1 23 0 262 0 26 26 chr5 14152003 14152042 -188933490 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1105 215 9 18 chr5 14154037 14154256 -188931276 - MER20 DNA MER1_type -2 217 1 2559 181 94 6 chr5 14155747 14156260 -188929272 + MER89 LTR ERV1 2 559 0 21 57 0 0 chr5 14157035 14157070 -188928462 + AT_rich Low_complexity Low_complexity 1 35 0 971 232 222 3 chr5 14157557 14157921 -188927611 + MER110A LTR ERV1 48 470 0 465 309 40 17 chr5 14159391 14159566 -188925966 - MIR SINE MIR -13 249 71 21 36 0 0 chr5 14159942 14159970 -188925562 + AT_rich Low_complexity Low_complexity 1 28 0 257 225 96 75 chr5 14160608 14160795 -188924737 + LTR48 LTR ERV1 547 737 -50 24 32 0 0 chr5 14161642 14161673 -188923859 + AT_rich Low_complexity Low_complexity 1 31 0 786 172 0 8 chr5 14161673 14161795 -188923737 - FLAM_A SINE Alu -12 121 1 237 239 22 87 chr5 14161992 14162130 -188923402 - MER5A DNA MER1_type -2 187 59 2680 111 5 24 chr5 14162433 14162804 -188922728 + THE1B LTR MaLR 1 364 0 11875 99 8 0 chr5 14162805 14164372 -188921160 + THE1B-int LTR MaLR 2 1580 0 2649 119 5 24 chr5 14164372 14164743 -188920789 + THE1B LTR MaLR 1 364 0 265 227 0 15 chr5 14165030 14165096 -188920436 + (TA)n Simple_repeat Simple_repeat 1 65 0 630 271 261 28 chr5 14166124 14166884 -188918648 + L2 LINE L2 2199 3221 -92 2138 139 0 0 chr5 14166884 14167187 -188918345 - AluSq SINE Alu -10 303 1 630 271 261 28 chr5 14167187 14167308 -188918224 + L2 LINE L2 3221 3313 0 530 204 88 15 chr5 14167882 14168019 -188917513 + Charlie2 DNA MER1_type 41 187 -2675 2431 239 89 15 chr5 14168166 14169040 -188916492 + Charlie2 DNA MER1_type 1908 2846 -16 4992 105 35 70 chr5 14170784 14171215 -188914317 + MER4E LTR ERV1 1 391 -388 2325 106 0 0 chr5 14171215 14171516 -188914016 - AluSc SINE Alu -8 301 1 4992 105 35 70 chr5 14171516 14171892 -188913640 + MER4E LTR ERV1 391 779 0 21 0 0 0 chr5 14173060 14173081 -188912451 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr5 14173308 14173329 -188912203 + AT_rich Low_complexity Low_complexity 1 21 0 268 257 14 29 chr5 14173404 14173474 -188912058 - MER5B DNA MER1_type 0 178 110 183 200 0 0 chr5 14173488 14173523 -188912009 + MER5B DNA MER1_type 138 172 -6 207 331 23 77 chr5 14173793 14173812 -188911720 - L2 LINE L2 -8 3264 3246 2487 55 0 7 chr5 14173812 14174120 -188911412 + AluY SINE Alu 1 306 -5 207 331 23 77 chr5 14174120 14174230 -188911302 - L2 LINE L2 -26 3246 3142 419 118 12 0 chr5 14174825 14174910 -188910622 + (GA)n Simple_repeat Simple_repeat 1 86 0 719 283 38 47 chr5 14175093 14175762 -188909770 + L1MCc LINE L1 1171 1949 -4887 * 880 270 81 12 chr5 14175758 14176080 -188909452 + L1MCc LINE L1 2176 2519 -4603 267 203 0 0 chr5 14176116 14176180 -188909352 + G-rich Low_complexity Low_complexity 1 64 0 1614 177 0 43 chr5 14176434 14176734 -188908798 + AluSx SINE Alu 1 287 -25 225 341 0 12 chr5 14181161 14181243 -188904289 - L2 LINE L2 -1 3271 3191 1574 287 120 15 chr5 14182312 14183362 -188902170 - L2 LINE L2 -14 3299 2142 237 344 149 0 chr5 14184726 14184947 -188900585 + L2 LINE L2 2827 3080 -233 5351 166 25 28 chr5 14184947 14185971 -188899561 + L1MA7 LINE L1 4923 5948 -343 1873 146 4 7 chr5 14185971 14186251 -188899281 + AluSx SINE Alu 1 279 -33 420 37 0 0 chr5 14186251 14186305 -188899227 + (CA)n Simple_repeat Simple_repeat 1 54 0 5351 166 25 28 chr5 14186305 14186580 -188898952 + L1MA7 LINE L1 5947 6226 -65 1261 168 58 13 chr5 14186580 14186806 -188898726 - MER46A DNA MER2_type 0 236 1 5351 166 25 28 chr5 14186806 14186862 -188898670 + L1MA7 LINE L1 6226 6281 -10 1862 125 40 3 chr5 14186884 14187181 -188898351 + L1MB5 LINE L1 5867 6174 0 552 182 40 40 chr5 14187228 14187376 -188898156 + L2 LINE L2 3158 3305 -8 265 270 110 10 chr5 14189924 14190024 -188895508 - MIR SINE MIR -70 192 83 442 335 62 5 chr5 14194222 14194446 -188891086 + MLT1J1 LTR MaLR 208 444 -2 2061 119 3 0 chr5 14194906 14195199 -188890333 + AluSx SINE Alu 1 294 -18 2432 125 15 9 chr5 14195563 14195898 -188889634 + MER1B DNA MER1_type 1 337 0 4139 256 68 30 chr5 14195986 14197478 -188888054 - L1MEc LINE L1 -4813 1583 36 2189 99 50 0 chr5 14199659 14199942 -188885590 - AluSc SINE Alu -12 297 1 1065 252 71 27 chr5 14200922 14201339 -188884193 - L1MEc LINE L1 -4904 1492 1095 185 0 40 0 chr5 14201339 14201364 -188884168 + (TTATA)n Simple_repeat Simple_repeat 1 26 0 2955 57 6 0 chr5 14201364 14201714 -188883818 - L1PA7 LINE L1 -19 6135 5784 1065 252 71 27 chr5 14201714 14201775 -188883757 - L1MEc LINE L1 -5300 1096 992 419 100 14 0 chr5 14201933 14202003 -188883529 + (GA)n Simple_repeat Simple_repeat 2 72 0 222 288 4 44 chr5 14202260 14202359 -188883173 - MIR SINE MIR -61 147 52 243 0 0 0 chr5 14203307 14203334 -188882198 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 319 285 23 15 chr5 14204609 14204739 -188880793 + L1ME4a LINE L1 5773 5903 -218 223 292 14 0 chr5 14205121 14205193 -188880339 + (TA)n Simple_repeat Simple_repeat 2 74 0 333 0 0 0 chr5 14207066 14207103 -188878429 + (TG)n Simple_repeat Simple_repeat 2 38 0 2521 90 0 0 chr5 14208149 14208460 -188877072 - AluSx SINE Alu -1 311 1 2127 132 10 0 chr5 14208567 14208871 -188876661 + AluSx SINE Alu 1 307 -5 935 217 14 5 chr5 14210499 14210716 -188874816 + MER20 DNA MER1_type 1 219 0 557 322 55 0 chr5 14211335 14211537 -188873995 + L1ME LINE L1 5588 5800 -321 473 267 60 0 chr5 14211695 14211845 -188873687 + MER97c DNA MER1_type? 20 178 -912 763 261 101 13 chr5 14211896 14212202 -188873330 + MLT1J LTR MaLR 40 372 -139 522 272 60 30 chr5 14216807 14216988 -188868544 + MIR SINE MIR 11 202 -60 1799 197 43 47 chr5 14216988 14217027 -188868505 + MLT1D LTR MaLR 1 39 -466 2484 67 0 10 chr5 14217027 14217326 -188868206 - AluY SINE Alu -14 297 2 1799 197 43 47 chr5 14217326 14217793 -188867739 + MLT1D LTR MaLR 39 505 0 522 272 60 30 chr5 14217793 14217846 -188867686 + MIR SINE MIR 202 252 -10 589 249 14 84 chr5 14217870 14218039 -188867493 + MIR SINE MIR 2 151 -111 2436 87 3 6 chr5 14218039 14218351 -188867181 + AluY SINE Alu 1 311 0 589 249 14 84 chr5 14218351 14218422 -188867110 + MIR SINE MIR 151 225 -37 877 264 5 5 chr5 14218475 14218691 -188866841 + MER58A DNA MER1_type 2 217 -7 346 207 37 24 chr5 14220990 14221072 -188864460 + MER5B DNA MER1_type 90 172 -6 209 367 24 12 chr5 14221218 14221387 -188864145 - MER5B DNA MER1_type -4 174 4 998 200 19 23 chr5 14221402 14221617 -188863915 + MER20 DNA MER1_type 5 218 -1 2131 113 0 36 chr5 14221956 14222265 -188863267 + AluSx SINE Alu 3 300 -12 438 225 116 7 chr5 14223638 14223776 -188861756 - MER5A DNA MER1_type -4 185 33 239 220 250 30 chr5 14223946 14224046 -188861486 - MIR SINE MIR -70 192 71 21 36 0 0 chr5 14224372 14224400 -188861132 + AT_rich Low_complexity Low_complexity 1 28 0 187 323 86 21 chr5 14227143 14227236 -188858296 + L2 LINE L2 3149 3247 -25 227 140 0 60 chr5 14227846 14227896 -188857636 - L1M3e LINE L1 -5955 1075 1029 557 163 8 57 chr5 14228559 14228682 -188856850 + MER20 DNA MER1_type 56 172 -47 203 186 12 116 chr5 14228787 14228873 -188856659 - MER5A DNA MER1_type -2 187 111 716 253 29 6 chr5 14229699 14229873 -188855659 - MER58C DNA MER1_type 0 215 38 2491 71 3 0 chr5 14231198 14231494 -188854038 + AluSp SINE Alu 1 297 -16 247 336 57 8 chr5 14231669 14231791 -188853741 - L2 LINE L2 -11 3261 3134 989 234 42 73 chr5 14232738 14233122 -188852410 + MLT1E2-int LTR MaLR 1000 1371 0 1503 241 109 66 chr5 14233122 14233716 -188851816 + MLT1E2 LTR MaLR 1 620 -6 720 65 75 0 chr5 14233900 14234513 -188851019 + (TA)n Simple_repeat Simple_repeat 1 658 0 2474 63 0 7 chr5 14236684 14236985 -188848547 + AluY SINE Alu 1 299 -12 1455 211 39 14 chr5 14237499 14237855 -188847677 + MLT1A1 LTR MaLR 1 365 0 2256 124 3 0 chr5 14238523 14238830 -188846702 - AluSp SINE Alu -5 308 1 1463 248 86 79 chr5 14239079 14239699 -188845833 + MLT1E2 LTR MaLR 1 626 0 1189 198 27 7 chr5 14241115 14241433 -188844099 + MLT1A1 LTR MaLR 1 357 -8 326 264 87 28 chr5 14241756 14242010 -188843522 + L2 LINE L2 2458 2781 -533 488 237 53 0 chr5 14242161 14242292 -188843240 + L2 LINE L2 3168 3305 -8 1290 229 97 26 chr5 14243028 14243597 -188841935 - MLT1E2 LTR MaLR 0 626 1 1809 144 0 0 chr5 14244182 14244439 -188841093 - AluSx SINE Alu -55 257 1 1614 189 114 43 chr5 14244895 14245361 -188840171 - MLT1D LTR MaLR -5 500 2 27 29 0 0 chr5 14245993 14246027 -188839505 + AT_rich Low_complexity Low_complexity 1 34 0 1913 180 3 0 chr5 14246126 14246432 -188839100 - AluJb SINE Alu -5 307 1 2139 151 56 8 chr5 14246984 14247362 -188838170 + MSTD LTR MaLR 1 396 0 2457 36 4 0 chr5 14247787 14248067 -188837465 - AluY SINE Alu -7 304 24 239 247 49 35 chr5 14248074 14248175 -188837357 + MIR SINE MIR 64 162 -46 2342 171 58 18 chr5 14248454 14248903 -188836629 - MLT1C LTR MaLR 0 467 1 603 162 20 116 chr5 14250207 14250309 -188835223 + MER96B DNA MER1_type? 1 76 -341 455 116 70 0 chr5 14250309 14250395 -188835137 - L1MB3 LINE L1 -9 6174 6083 603 162 20 116 chr5 14250395 14250490 -188835042 + MER96B DNA MER1_type? 76 179 -238 285 236 14 0 chr5 14250550 14250622 -188834910 - MIR SINE MIR -115 147 75 191 325 0 26 chr5 14251325 14251402 -188834130 + L2 LINE L2 3185 3259 -13 290 370 16 16 chr5 14251556 14251740 -188833792 + MIR SINE MIR 8 191 -71 212 360 26 9 chr5 14252568 14252682 -188832850 - L2 LINE L2 -328 2944 2829 2341 213 31 6 chr5 14252959 14253517 -188832015 + L1MB5 LINE L1 5566 6167 -7 2371 90 6 0 chr5 14255793 14256104 -188829428 - AluSq SINE Alu 0 313 1 1368 175 4 41 chr5 14257484 14257752 -188827780 + Tigger3(Golem) DNA MER2_type 2781 3038 0 2207 118 7 0 chr5 14258160 14258457 -188827075 + AluSx SINE Alu 1 299 -13 194 253 38 51 chr5 14259292 14259371 -188826161 + L2 LINE L2 2677 2754 -560 1989 189 52 18 chr5 14259823 14260268 -188825264 - MLT1C LTR MaLR -2 465 6 683 288 16 0 chr5 14266286 14266470 -188819062 + MER58A DNA MER1_type 30 216 -8 1974 131 0 11 chr5 14267048 14267331 -188818201 + AluSg SINE Alu 1 280 -30 180 111 0 0 chr5 14267335 14267362 -188818170 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 387 41 0 0 chr5 14268063 14268112 -188817420 + (CA)n Simple_repeat Simple_repeat 2 50 0 1293 208 79 22 chr5 14268233 14268714 -188816818 + MLT1F1 LTR MaLR 3 559 -8 1675 201 137 27 chr5 14269070 14269517 -188816015 - MLT1D LTR MaLR -8 497 2 183 80 0 0 chr5 14269620 14269645 -188815887 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 236 318 24 0 chr5 14269650 14269735 -188815797 - L2 LINE L2 -22 3291 3205 477 301 67 16 chr5 14269757 14269950 -188815582 + L2 LINE L2 2864 3066 -247 22 35 0 0 chr5 14270856 14270885 -188814647 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr5 14271252 14271294 -188814238 + AT_rich Low_complexity Low_complexity 1 42 0 2362 80 7 3 chr5 14271425 14271725 -188813807 - AluY SINE Alu -10 301 1 1693 181 0 32 chr5 14272875 14273184 -188812348 - AluJb SINE Alu -13 299 1 231 88 0 0 chr5 14273993 14274027 -188811505 + (GA)n Simple_repeat Simple_repeat 1 34 0 2050 176 74 49 chr5 14274080 14274552 -188810980 + MER110 LTR ERV1 8 491 0 466 230 197 7 chr5 14275155 14275307 -188810225 - MIR SINE MIR -3 259 79 359 204 20 20 chr5 14275565 14275663 -188809869 - L1MA8 LINE L1 -5 6286 6189 324 70 0 0 chr5 14275740 14275783 -188809749 + (CA)n Simple_repeat Simple_repeat 2 44 0 2605 129 3 6 chr5 14275922 14276287 -188809245 - THE1B LTR MaLR 0 364 1 239 351 92 7 chr5 14276356 14276540 -188808992 - MIR SINE MIR -57 205 6 268 315 82 20 chr5 14276922 14277068 -188808464 - L2 LINE L2 -203 3069 2915 296 136 254 0 chr5 14277202 14277261 -188808271 - MADE1 DNA Mariner 0 80 7 299 271 17 59 chr5 14277280 14277398 -188808134 - MER5B DNA MER1_type -33 145 33 208 188 21 21 chr5 14277576 14277624 -188807908 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 234 260 65 65 chr5 14278338 14278461 -188807071 + LTR33 LTR ERVL 99 221 -300 200 346 59 20 chr5 14278710 14278811 -188806721 - L2 LINE L2 -508 2806 2702 678 223 0 7 chr5 14278919 14279058 -188806474 - L1MB5 LINE L1 -3 6171 6034 513 299 226 26 chr5 14279066 14279601 -188805931 - L2 LINE L2 -609 2705 2064 24 0 0 0 chr5 14280804 14280828 -188804704 + AT_rich Low_complexity Low_complexity 1 24 0 249 193 53 0 chr5 14280834 14280891 -188804641 - MIR SINE MIR -17 245 186 372 316 95 7 chr5 14280904 14281216 -188804316 - L1ME LINE L1 -453 5668 5318 30 77 0 0 chr5 14282682 14282747 -188802785 + AT_rich Low_complexity Low_complexity 1 65 0 186 405 101 0 chr5 14283562 14283710 -188801822 - L2 LINE L2 -4 3268 3106 1250 113 0 27 chr5 14284319 14284505 -188801027 + AluSg/x SINE Alu 132 312 0 645 122 0 0 chr5 14284614 14284696 -188800836 - AluS SINE Alu -228 84 3 26 0 0 0 chr5 14284926 14284952 -188800580 + AT_rich Low_complexity Low_complexity 1 26 0 1946 141 82 25 chr5 14285218 14285573 -188799959 + THE1C LTR MaLR 1 375 0 874 96 39 31 chr5 14286828 14287441 -188798091 + (TG)n Simple_repeat Simple_repeat 1 617 0 2365 102 0 3 chr5 14288724 14289037 -188796495 - AluSq SINE Alu -1 312 1 243 191 0 0 chr5 14289049 14289112 -188796420 + CT-rich Low_complexity Low_complexity 1 63 0 209 333 42 61 chr5 14290291 14290504 -188795028 + L2 LINE L2 2969 3177 -95 6675 92 13 13 chr5 14292430 14293808 -188791724 + L1PA10 LINE L1 4789 6166 -2 270 280 34 42 chr5 14293938 14294056 -188791476 + MLT1J LTR MaLR 358 474 -37 402 216 35 26 chr5 14294107 14294223 -188791309 + L2 LINE L2 3101 3217 -96 241 256 0 37 chr5 14294475 14294517 -188791015 + L2 LINE L2 3235 3274 -39 2446 168 26 16 chr5 14294517 14294946 -188790586 + Tigger2a DNA MER2_type 1 433 -1 241 256 0 37 chr5 14294946 14294985 -188790547 + L2 LINE L2 3274 3313 0 828 209 44 11 chr5 14295818 14296000 -188789532 + MER58A DNA MER1_type 37 224 0 882 276 107 31 chr5 14296648 14297256 -188788276 + MLT2F LTR ERVL 2 655 -8 1850 227 29 48 chr5 14297535 14298050 -188787482 + MLT1D LTR MaLR 1 505 0 768 265 70 90 chr5 14299714 14300345 -188785187 + HAL1 LINE L1 734 1351 -1156 450 229 251 16 chr5 14300424 14300607 -188784925 + HAL1 LINE L1 1557 1782 -725 233 238 99 50 chr5 14303999 14304100 -188781432 - MIR SINE MIR -22 240 135 23 0 0 0 chr5 14304594 14304617 -188780915 + AT_rich Low_complexity Low_complexity 1 23 0 2534 64 0 3 chr5 14305845 14306157 -188779375 - AluY SINE Alu 0 311 1 466 248 113 89 chr5 14306166 14306468 -188779064 + L2 LINE L2 3004 3312 -1 252 0 0 0 chr5 14306561 14306589 -188778943 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 2413 105 0 0 chr5 14307970 14308283 -188777249 - AluSq SINE Alu 0 313 1 743 67 0 0 chr5 14308610 14308729 -188776803 - AluSg/x SINE Alu 0 311 193 832 145 0 0 chr5 14308736 14308853 -188776679 - FLAM_C SINE Alu -16 117 1 201 164 16 33 chr5 14310358 14310419 -188775113 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 221 310 178 8 chr5 14311100 14311229 -188774303 + MIR SINE MIR 89 239 -23 3045 78 3 0 chr5 14312192 14312576 -188772956 + L1PA7 LINE L1 5770 6154 0 276 259 101 62 chr5 14313210 14313546 -188771986 + L1M4 LINE L1 4310 4658 -1488 366 228 26 35 chr5 14314045 14314159 -188771373 - L1ME LINE L1 -663 5499 5387 658 272 52 35 chr5 14314159 14314574 -188770958 + L1M4 LINE L1 4418 4836 -1310 2057 78 8 0 chr5 14314861 14315119 -188770413 + AluY SINE Alu 43 302 -9 1853 148 30 3 chr5 14315306 14315603 -188769929 + AluSx SINE Alu 5 309 -3 287 277 12 0 chr5 14316179 14316262 -188769270 + MER69 DNA AcHobo 2434 2517 -9 292 349 137 11 chr5 14316571 14316746 -188768786 - L2 LINE L2 -678 2636 2440 31 0 0 0 chr5 14317088 14317119 -188768413 + AT_rich Low_complexity Low_complexity 1 31 0 268 230 11 23 chr5 14318988 14319075 -188766457 + (TA)n Simple_repeat Simple_repeat 1 86 0 437 288 86 56 chr5 14319721 14319954 -188765578 + L2 LINE L2 2670 2909 -405 489 317 18 23 chr5 14320044 14320265 -188765267 + L2 LINE L2 3075 3294 -19 1623 209 45 73 chr5 14321381 14321900 -188763632 + MLT1D LTR MaLR 2 567 0 296 264 76 69 chr5 14322888 14323032 -188762500 - MER70-int LTR ERVL -2933 2090 1946 425 120 43 0 chr5 14323164 14323256 -188762276 + CT-rich Low_complexity Low_complexity 3 98 0 1431 206 109 6 chr5 14324649 14324960 -188760572 + MLT1D LTR MaLR 1 343 -162 1741 176 7 0 chr5 14327706 14327995 -188757537 + AluJb SINE Alu 5 295 -17 606 276 190 41 chr5 14330824 14330937 -188754595 + L2 LINE L2 2788 2883 -430 1269 240 88 30 chr5 14330937 14331378 -188754154 + MLT1C LTR MaLR 1 467 0 606 276 190 41 chr5 14331378 14331598 -188753934 + L2 LINE L2 2883 3069 -244 2578 138 14 8 chr5 14331598 14331960 -188753572 - THE1B LTR MaLR 0 364 1 606 276 190 41 chr5 14331960 14332088 -188753444 + L2 LINE L2 3069 3313 0 518 223 0 25 chr5 14332477 14332598 -188752934 - MIR SINE MIR -122 140 23 2143 111 3 40 chr5 14333238 14333562 -188751970 + AluSx SINE Alu 1 312 0 1899 148 21 0 chr5 14333667 14333958 -188751574 - AluJo SINE Alu -15 297 1 929 193 6 11 chr5 14334539 14334715 -188750817 + AluJo SINE Alu 122 296 -16 258 32 0 0 chr5 14334821 14334852 -188750680 + (TG)n Simple_repeat Simple_repeat 2 32 0 363 193 0 0 chr5 14334852 14334935 -188750597 + (TA)n Simple_repeat Simple_repeat 2 84 0 186 133 0 0 chr5 14334978 14335008 -188750524 + (CATATA)n Simple_repeat Simple_repeat 5 34 0 2898 16 0 0 chr5 14335244 14335557 -188749975 + L1PA2 LINE L1 5841 6153 -2 1424 147 137 13 chr5 14336126 14336425 -188749107 + THE1C LTR MaLR 1 336 -39 10887 119 30 12 chr5 14336426 14337978 -188747554 + THE1C-int LTR MaLR 1 1580 0 2088 127 63 30 chr5 14337978 14338341 -188747191 + THE1C LTR MaLR 1 375 0 327 85 0 0 chr5 14338890 14338937 -188746595 + (TG)n Simple_repeat Simple_repeat 1 47 0 333 229 0 0 chr5 14339330 14339435 -188746097 + (CA)n Simple_repeat Simple_repeat 1 105 0 428 308 62 7 chr5 14339528 14339674 -188745858 - MIR SINE MIR -48 214 61 1745 167 89 30 chr5 14339937 14340332 -188745200 + LTR52 LTR ERVL 1 418 -3 916 204 82 0 chr5 14340688 14340884 -188744648 - MER20 DNA MER1_type -7 212 1 2538 74 0 0 chr5 14342187 14342497 -188743035 - AluY SINE Alu -1 310 1 1128 143 0 30 chr5 14342673 14342841 -188742691 - FRAM SINE Alu -1 165 3 283 188 0 25 chr5 14343861 14343941 -188741591 + (CATATA)n Simple_repeat Simple_repeat 3 80 0 203 190 0 35 chr5 14344870 14344928 -188740604 + (CCCTG)n Simple_repeat Simple_repeat 3 58 0 750 107 43 14 chr5 14345286 14345857 -188739675 + (CA)n Simple_repeat Simple_repeat 1 587 0 465 143 41 21 chr5 14345880 14346359 -188739173 + (CA)n Simple_repeat Simple_repeat 1 488 0 224 204 0 56 chr5 14346413 14346467 -188739065 + L2 LINE L2 2718 2768 -546 787 211 43 0 chr5 14347665 14347850 -188737682 + MER20 DNA MER1_type 27 219 0 222 316 24 97 chr5 14347932 14348138 -188737394 + MIR SINE MIR 22 212 -50 382 267 43 105 chr5 14348390 14348667 -188736865 + MIR SINE MIR 2 261 -1 2370 99 7 0 chr5 14349459 14349763 -188735769 - AluSx SINE Alu -6 306 1 1724 201 64 31 chr5 14350445 14350928 -188734604 + MLT1D LTR MaLR 7 505 0 382 268 159 78 chr5 14351291 14351411 -188734121 - L2 LINE L2 -64 3249 3140 1515 188 124 28 chr5 14351411 14351837 -188733695 + MLT1C LTR MaLR 1 467 0 382 268 159 78 chr5 14351837 14352218 -188733314 - L2 LINE L2 -173 3140 2690 243 298 35 0 chr5 14352219 14352318 -188733214 + L1ME2 LINE L1 6065 6324 -10 313 260 175 15 chr5 14352326 14352526 -188733006 - L2 LINE L2 -613 2701 2470 254 256 29 12 chr5 14353510 14353682 -188731850 + (TA)n Simple_repeat Simple_repeat 2 176 0 1534 221 42 16 chr5 14354425 14354805 -188730727 - MER90 LTR ERV1 0 614 225 324 0 0 0 chr5 14355635 14355671 -188729861 + (TC)n Simple_repeat Simple_repeat 2 37 0 240 35 0 0 chr5 14355670 14355699 -188729833 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 1999 155 3 0 chr5 14355699 14355995 -188729537 - AluJo SINE Alu -15 297 1 26 30 0 0 chr5 14356266 14356299 -188729233 + AT_rich Low_complexity Low_complexity 1 33 0 977 261 78 7 chr5 14356362 14356809 -188728723 - MER119 DNA MER1_type -2 581 6 27 29 0 0 chr5 14357112 14357146 -188728386 + AT_rich Low_complexity Low_complexity 1 34 0 479 306 40 69 chr5 14357698 14357948 -188727584 - MIR SINE MIR -11 251 6 2148 117 47 36 chr5 14358490 14358850 -188726682 + THE1B LTR MaLR 1 364 0 398 138 25 38 chr5 14359951 14360031 -188725501 + MER20 DNA MER1_type 141 219 0 202 387 69 15 chr5 14360962 14361166 -188724366 + L2 LINE L2 2551 2765 -549 367 298 48 42 chr5 14361557 14361725 -188723807 + L2 LINE L2 3127 3295 -18 1127 190 14 23 chr5 14361988 14362209 -188723323 - MER20 DNA MER1_type 0 219 1 1872 124 66 30 chr5 14362542 14362904 -188722628 - THE1C LTR MaLR 0 375 1 784 187 7 0 chr5 14364157 14364312 -188721220 + MLT2C1 LTR ERVL 27 182 -215 722 172 0 0 chr5 14364318 14364440 -188721092 + MLT2C2 LTR ERVL 295 416 -48 377 261 124 23 chr5 14364484 14364805 -188720727 + MLT1F LTR MaLR 231 527 -15 601 181 110 1 chr5 14365730 14365954 -188719578 - MSTD LTR MaLR -119 277 1 454 147 60 86 chr5 14367256 14367372 -188718160 + LTR54 LTR ERV1 81 193 -317 1056 170 102 18 chr5 14367376 14367659 -188717873 + LTR54B LTR ERV1 169 475 -23 2643 61 0 0 chr5 14367659 14367970 -188717562 + AluY SINE Alu 1 311 0 299 258 40 0 chr5 14368514 14368638 -188716894 + L1ME4a LINE L1 5757 5885 -236 282 95 0 0 chr5 14368670 14368712 -188716820 + (TG)n Simple_repeat Simple_repeat 1 42 0 463 306 115 25 chr5 14368954 14369232 -188716300 - L3 LINE CR1 -393 1184 882 568 162 52 15 chr5 14369375 14369511 -188716021 + MLT1C LTR MaLR 1 141 -326 491 205 0 0 chr5 14369519 14369602 -188715930 - MER58A DNA MER1_type -18 89 7 259 365 48 12 chr5 14369612 14369779 -188715753 - MIR SINE MIR -89 173 1 1884 158 0 10 chr5 14369826 14370130 -188715402 + AluSx SINE Alu 1 301 -11 2284 100 0 19 chr5 14370877 14371188 -188714344 - AluSg SINE Alu -5 305 1 2327 86 0 0 chr5 14372065 14372357 -188713175 - AluSx SINE Alu -20 292 1 1788 150 0 64 chr5 14373481 14373808 -188711724 + AluSx SINE Alu 3 308 -4 640 316 18 4 chr5 14374206 14374431 -188711101 + MIR SINE MIR 3 230 -32 350 210 20 10 chr5 14376357 14376457 -188709075 + MER112 DNA MER1_type 148 248 -12 32 57 0 0 chr5 14377174 14377227 -188708305 + AT_rich Low_complexity Low_complexity 1 53 0 1556 175 68 22 chr5 14378037 14378402 -188707130 + MER58D DNA MER1_type 2 383 -3 22 35 0 0 chr5 14378420 14378449 -188707083 + AT_rich Low_complexity Low_complexity 1 29 0 865 231 18 27 chr5 14380289 14380514 -188705018 - MIR SINE MIR -25 237 15 305 261 52 30 chr5 14381400 14381534 -188703998 - L2 LINE L2 -1059 2255 2119 668 225 89 0 chr5 14381534 14381747 -188703785 + L2 LINE L2 1981 2212 -1102 1277 235 43 56 chr5 14381767 14382235 -188703297 + MLT1C LTR MaLR 6 467 0 21 0 0 0 chr5 14382556 14382577 -188702955 + AT_rich Low_complexity Low_complexity 1 21 0 1876 146 11 0 chr5 14382679 14383009 -188702523 - AluSx SINE Alu 0 333 1 371 283 209 4 chr5 14383515 14383759 -188701773 - L2 LINE L2 0 3313 3020 289 269 52 30 chr5 14383833 14383967 -188701565 - L2 LINE L2 -1059 2255 2119 594 220 93 9 chr5 14383967 14384181 -188701351 + L2 LINE L2 1981 2212 -1102 307 281 39 23 chr5 14384198 14384326 -188701206 + MER94 DNA DNA 3 132 -2 941 283 172 40 chr5 14384329 14384793 -188700739 + L2 LINE L2 2216 2754 -560 2626 119 21 26 chr5 14384793 14385220 -188700312 - MSTA LTR MaLR -3 425 1 941 283 172 40 chr5 14385220 14385261 -188700271 + L2 LINE L2 2754 2788 -526 1253 213 37 48 chr5 14385491 14385867 -188699665 - MLT1A2 LTR MaLR 0 374 3 1856 175 25 48 chr5 14386715 14387114 -188698418 - MLT1B LTR MaLR 0 390 1 685 174 132 4 chr5 14387114 14387321 -188698211 - MLT1G1 LTR MaLR -13 582 281 204 265 0 0 chr5 14387445 14387494 -188698038 + L2 LINE L2 3247 3295 -18 2435 100 0 0 chr5 14388572 14388882 -188696650 + AluSg SINE Alu 1 310 0 3781 88 30 2 chr5 14389444 14389981 -188695551 - L1PA10 LINE L1 -1 6167 5616 1522 172 72 60 chr5 14390127 14390587 -188694945 + MER31B LTR ERV1 1 661 0 351 268 70 7 chr5 14391197 14391339 -188694193 + L1ME2 LINE L1 4906 5056 -1090 329 331 111 12 chr5 14391532 14391704 -188693828 - MIR SINE MIR -41 221 33 532 295 88 32 chr5 14391832 14392242 -188693290 + L1ME2 LINE L1 5454 5886 -278 1921 141 74 52 chr5 14392285 14392690 -188692842 + MLT2D LTR ERVL 1 414 0 291 164 0 0 chr5 14393983 14394044 -188691488 + A-rich Low_complexity Low_complexity 1 61 0 22 35 0 0 chr5 14396434 14396463 -188689069 + AT_rich Low_complexity Low_complexity 1 29 0 216 217 0 0 chr5 14396950 14396996 -188688536 + L2 LINE L2 3267 3312 -1 1627 176 91 38 chr5 14397366 14397571 -188687961 + MLT1C LTR MaLR 3 196 -271 2205 134 27 21 chr5 14397571 14397944 -188687588 + THE1C LTR MaLR 1 375 0 1627 176 91 38 chr5 14397944 14398135 -188687397 + MLT1C LTR MaLR 196 420 -47 303 270 6 103 chr5 14398161 14398335 -188687197 - MIR SINE MIR -28 234 78 4186 204 102 36 chr5 14399143 14399758 -188685774 + Charlie1a DNA MER1_type 8 581 -2180 13560 36 0 0 chr5 14399758 14402174 -188683358 + L1PA4 LINE L1 3737 6154 -1 4186 204 102 36 chr5 14402174 14402915 -188682617 + Charlie1a DNA MER1_type 581 1454 -1 1920 158 23 0 chr5 14403346 14403649 -188681883 - AluJo SINE Alu -2 310 1 551 259 114 15 chr5 14403902 14404103 -188681429 + MIR SINE MIR 2 222 -40 21 0 0 0 chr5 14404119 14404140 -188681392 + AT_rich Low_complexity Low_complexity 1 21 0 206 296 133 10 chr5 14404539 14404637 -188680895 - MIR SINE MIR -67 141 32 815 142 32 53 chr5 14405742 14405932 -188679600 + MER53 DNA DNA 3 188 -1 1929 113 28 7 chr5 14406189 14406222 -188679310 - AluSg SINE Alu -20 290 259 207 0 0 0 chr5 14406222 14406245 -188679287 + (GGCTG)n Simple_repeat Simple_repeat 5 27 0 1929 113 28 7 chr5 14406245 14406495 -188679037 - AluSg SINE Alu -51 259 1 520 337 36 8 chr5 14408509 14408761 -188676771 + MIR SINE MIR 2 260 -2 2356 100 31 31 chr5 14408977 14409326 -188676206 + THE1B LTR MaLR 1 349 -15 344 50 0 0 chr5 14409327 14409367 -188676165 + THE1B LTR MaLR 316 355 0 221 57 29 0 chr5 14409483 14409518 -188676014 + (CA)n Simple_repeat Simple_repeat 2 37 0 194 105 26 0 chr5 14409553 14409591 -188675941 + (CA)n Simple_repeat Simple_repeat 2 40 0 318 169 96 36 chr5 14409665 14409748 -188675784 - MER69 DNA AcHobo -9 2517 2430 219 36 0 0 chr5 14410125 14410153 -188675379 + (CTTG)n Simple_repeat Simple_repeat 3 30 0 671 301 31 9 chr5 14410297 14410526 -188675006 - MIR SINE MIR -21 241 8 707 344 74 40 chr5 14410774 14411467 -188674065 - L2 LINE L2 -24 3248 2525 284 289 40 59 chr5 14412204 14412356 -188673176 + MARNA DNA Mariner 86 234 -352 360 0 0 0 chr5 14412483 14412523 -188673009 + (TG)n Simple_repeat Simple_repeat 2 41 0 1825 202 14 16 chr5 14412983 14413349 -188672183 + MLT1A1 LTR MaLR 1 365 0 21 36 0 0 chr5 14413392 14413420 -188672112 + AT_rich Low_complexity Low_complexity 1 28 0 821 156 106 110 chr5 14413482 14413700 -188671832 - MER58A DNA MER1_type -4 220 4 1975 156 178 6 chr5 14413950 14414315 -188671217 - MSTA LTR MaLR 0 428 1 3822 135 8 12 chr5 14414317 14414911 -188670621 + MSTA-int LTR MaLR 989 1580 0 1742 151 177 45 chr5 14414911 14415289 -188670243 + MSTA LTR MaLR 1 428 0 287 195 78 109 chr5 14415304 14415432 -188670100 - L2 LINE L2 -1 3312 3189 * 332 241 46 19 chr5 14415405 14415513 -188670019 + L2 LINE L2 3202 3312 -1 215 244 116 58 chr5 14415538 14415710 -188669822 + L2 LINE L2 2350 2531 -783 246 290 35 0 chr5 14415902 14416047 -188669485 + (CA)n Simple_repeat Simple_repeat 2 151 0 366 233 47 6 chr5 14416066 14416238 -188669294 + (CA)n Simple_repeat Simple_repeat 1 179 0 258 279 35 6 chr5 14416345 14416517 -188669015 + (CA)n Simple_repeat Simple_repeat 1 177 0 305 273 35 6 chr5 14416697 14416869 -188668663 + (CA)n Simple_repeat Simple_repeat 1 177 0 236 237 27 11 chr5 14416912 14417097 -188668435 + (CA)n Simple_repeat Simple_repeat 1 189 0 234 174 33 16 chr5 14417108 14417229 -188668303 + (CA)n Simple_repeat Simple_repeat 1 123 0 302 225 50 6 chr5 14417269 14417429 -188668103 + (CA)n Simple_repeat Simple_repeat 1 167 0 3081 48 11 0 chr5 14417474 14417825 -188667707 - THE1A LTR MaLR 0 355 1 2205 110 132 6 chr5 14418904 14419267 -188666265 - MSTA LTR MaLR -19 409 1 1578 154 0 54 chr5 14419547 14419845 -188665687 - AluJo SINE Alu -30 282 1 703 175 28 34 chr5 14420040 14420217 -188665315 - MER53 DNA DNA 0 189 14 195 239 22 0 chr5 14421350 14421396 -188664136 - MIR SINE MIR -9 253 207 1185 137 0 0 chr5 14421396 14421571 -188663961 - AluSg/x SINE Alu -5 307 133 252 267 40 0 chr5 14421571 14421646 -188663886 - MIR SINE MIR -48 214 137 360 0 0 0 chr5 14421646 14421686 -188663846 + (TTA)n Simple_repeat Simple_repeat 3 42 0 3886 39 2 0 chr5 14421686 14422122 -188663410 - L1PA4 LINE L1 -18 6137 5701 1749 19 0 0 chr5 14422122 14422332 -188663200 + L1P2 LINE L1 5268 5477 -678 568 242 32 38 chr5 14422337 14422494 -188663038 - MIR SINE MIR -106 156 1 664 303 154 31 chr5 14423316 14424062 -188661470 + L2 LINE L2 925 1762 -1552 30 0 0 0 chr5 14424096 14424126 -188661406 + AT_rich Low_complexity Low_complexity 1 30 0 396 210 48 32 chr5 14424137 14424261 -188661271 - MIR SINE MIR -25 237 112 615 254 155 9 chr5 14424272 14424504 -188661028 + L2 LINE L2 3043 3308 -5 26 0 0 0 chr5 14424561 14424587 -188660945 + AT_rich Low_complexity Low_complexity 1 26 0 2071 127 0 0 chr5 14424677 14424998 -188660534 - AluSx SINE Alu 0 321 1 2224 123 48 31 chr5 14425655 14426013 -188659519 - THE1B LTR MaLR 0 364 1 248 109 0 22 chr5 14426896 14426942 -188658590 + (CA)n Simple_repeat Simple_repeat 1 45 0 195 42 0 0 chr5 14428211 14428235 -188657297 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1092 195 45 84 chr5 14428238 14428525 -188657007 - AluJo SINE Alu -34 278 3 293 263 162 79 chr5 14428692 14428856 -188656676 - L2 LINE L2 -835 2479 2289 487 165 13 0 chr5 14428856 14428935 -188656597 - MADE1 DNA Mariner 0 80 1 293 263 162 79 chr5 14428935 14428998 -188656534 - L2 LINE L2 -1025 2289 2233 833 175 56 94 chr5 14430456 14430776 -188654756 - Charlie2 DNA MER1_type -413 2449 2142 * 2258 232 91 25 chr5 14430775 14431443 -188654089 + MER72 LTR ERV1 10 721 -1 278 231 0 0 chr5 14431446 14431511 -188654021 - Charlie2 DNA MER1_type -711 2151 2087 208 132 85 151 chr5 14432017 14432123 -188653409 - MER5A DNA MER1_type -77 112 14 345 239 231 17 chr5 14432923 14433040 -188652492 - MER5A DNA MER1_type -2 187 46 1644 162 3 44 chr5 14433464 14433779 -188651753 - AluJb SINE Alu -6 306 5 1896 131 47 86 chr5 14434050 14434345 -188651187 - MLT1B LTR MaLR 0 390 114 2091 125 3 0 chr5 14434345 14434632 -188650900 - AluSx SINE Alu -24 288 1 1896 131 47 86 chr5 14434632 14434742 -188650790 - MLT1B LTR MaLR -276 114 1 2577 52 0 40 chr5 14435367 14435691 -188649841 + AluY SINE Alu 1 311 0 1319 141 187 38 chr5 14435716 14435978 -188649554 + AluSq SINE Alu 1 301 -2 187 286 79 0 chr5 14436784 14436847 -188648685 + L2 LINE L2 3246 3313 0 22 70 0 0 chr5 14436900 14436943 -188648589 + AT_rich Low_complexity Low_complexity 1 43 0 1307 137 43 0 chr5 14436950 14437161 -188648371 + L1MA6 LINE L1 5996 6215 -85 2481 63 3 0 chr5 14437171 14437470 -188648062 + AluSp SINE Alu 1 300 -13 2305 159 55 14 chr5 14437645 14437909 -188647623 - L1MB4 LINE L1 -3 6177 5886 2124 144 86 12 chr5 14437909 14438248 -188647284 + THE1B LTR MaLR 1 364 0 2305 159 55 14 chr5 14438248 14438422 -188647110 - L1MB4 LINE L1 -294 5886 5721 1455 164 0 4 chr5 14438429 14438661 -188646871 - AluJb SINE Alu 0 312 82 225 273 30 0 chr5 14438897 14438963 -188646569 - MLT1F LTR MaLR -178 364 297 386 328 8 0 chr5 14439013 14439144 -188646388 - MLT1F LTR MaLR -393 149 18 768 155 28 14 chr5 14439374 14439516 -188646016 + L1MA6 LINE L1 6144 6287 -13 204 255 20 0 chr5 14440197 14440248 -188645284 + CT-rich Low_complexity Low_complexity 2 53 0 4354 102 18 55 chr5 14440803 14441461 -188644071 + MER51A LTR ERV1 1 634 0 408 262 18 24 chr5 14441822 14441986 -188643546 + (TA)n Simple_repeat Simple_repeat 1 163 0 183 42 0 0 chr5 14442022 14442046 -188643486 + (CA)n Simple_repeat Simple_repeat 1 24 0 2704 23 7 3 chr5 14444105 14444415 -188641117 - AluY SINE Alu 0 311 1 697 142 0 71 chr5 14444654 14444758 -188640774 + MLT1C LTR MaLR 350 445 -22 1696 170 106 6 chr5 14444758 14445088 -188640444 + MLT1A1 LTR MaLR 3 365 0 697 142 0 71 chr5 14445088 14445110 -188640422 + MLT1C LTR MaLR 445 467 0 287 271 149 56 chr5 14445595 14445916 -188639616 + L3 LINE CR1 587 937 -640 371 297 16 0 chr5 14445981 14446109 -188639423 + MIR SINE MIR 107 236 -26 463 303 62 43 chr5 14446367 14446575 -188638957 + L3 LINE CR1 1264 1475 -102 1651 170 10 17 chr5 14446904 14447198 -188638334 + AluJo SINE Alu 2 293 -19 2414 28 43 0 chr5 14449301 14449583 -188635949 + AluY SINE Alu 2 295 -16 186 43 0 0 chr5 14449732 14449755 -188635777 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 183 80 0 0 chr5 14450945 14450970 -188634562 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 237 65 0 0 chr5 14453615 14453646 -188631886 + (A)n Simple_repeat Simple_repeat 1 31 0 27 29 0 0 chr5 14454357 14454391 -188631141 + AT_rich Low_complexity Low_complexity 1 34 0 630 265 57 14 chr5 14454497 14454708 -188630824 - MIR SINE MIR -33 229 10 1978 111 0 4 chr5 14455067 14455329 -188630203 + AluSg SINE Alu 35 295 -15 36 23 0 0 chr5 14455532 14455575 -188629957 + AT_rich Low_complexity Low_complexity 1 43 0 661 111 0 0 chr5 14457598 14457688 -188627844 + L1PA10 LINE L1 6018 6107 -61 922 132 7 0 chr5 14457603 14457747 -188627785 + L1PA10 LINE L1 6023 6167 -1 180 0 0 0 chr5 14458240 14458260 -188627272 + (T)n Simple_repeat Simple_repeat 1 20 0 344 285 158 23 chr5 14458314 14458535 -188626997 - MIR SINE MIR -11 251 1 2236 108 0 3 chr5 14458700 14458995 -188626537 + AluSg SINE Alu 1 294 -16 2447 203 38 9 chr5 14459783 14460418 -188625114 + L1MA6 LINE L1 2482 3134 -3012 7505 160 18 25 chr5 14460435 14463018 -188622514 + L1MA6 LINE L1 3730 6295 -5 25 0 0 0 chr5 14463772 14463797 -188621735 + AT_rich Low_complexity Low_complexity 1 25 0 195 42 0 0 chr5 14466193 14466217 -188619315 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2151 103 0 0 chr5 14466217 14466498 -188619034 - AluSq SINE Alu -32 281 1 818 194 0 0 chr5 14466499 14466633 -188618899 - AluJo SINE Alu -178 134 1 393 286 70 41 chr5 14466641 14466812 -188618720 + MIR SINE MIR 51 226 -36 1331 242 21 6 chr5 14467996 14468326 -188617206 - MER58B DNA MER1_type 0 341 7 23 33 0 0 chr5 14471840 14471870 -188613662 + AT_rich Low_complexity Low_complexity 1 30 0 360 322 61 22 chr5 14473902 14474082 -188611450 + MIR SINE MIR 25 211 -51 463 262 202 57 chr5 14474763 14475095 -188610437 - L2 LINE L2 -4 3309 2930 355 341 28 34 chr5 14475398 14475577 -188609955 - MER5A DNA MER1_type -3 186 9 544 206 0 9 chr5 14477916 14478023 -188607509 - MER5A DNA MER1_type -80 109 4 235 144 115 4 chr5 14478091 14478145 -188607387 - Alu SINE Alu -254 47 2 748 164 8 8 chr5 14478431 14478553 -188606979 - FLAM_A SINE Alu -10 123 2 261 279 81 68 chr5 14478687 14478848 -188606684 + MER5B DNA MER1_type 1 163 -15 261 0 0 0 chr5 14479953 14479982 -188605550 + (T)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr5 14480562 14480588 -188604944 + AT_rich Low_complexity Low_complexity 1 26 0 1715 163 82 18 chr5 14481069 14481412 -188604120 + MLT1A1 LTR MaLR 1 365 0 315 0 0 0 chr5 14481490 14481525 -188604007 + (TG)n Simple_repeat Simple_repeat 2 36 0 2245 107 0 19 chr5 14482222 14482532 -188603000 - AluSg SINE Alu -6 304 1 546 297 17 17 chr5 14484531 14484706 -188600826 + MIR SINE MIR 18 192 -70 21 71 0 0 chr5 14484709 14484751 -188600781 + AT_rich Low_complexity Low_complexity 1 42 0 1509 321 51 34 chr5 14486048 14486804 -188598728 + L2 LINE L2 2269 3036 -277 2281 84 0 0 chr5 14486863 14487190 -188598342 + AluY SINE Alu 1 327 0 821 120 0 0 chr5 14487190 14487315 -188598217 + L1PA16 LINE L1 6034 6158 -8 261 308 179 0 chr5 14487374 14487491 -188598041 + L2 LINE L2 3167 3304 -9 1829 129 4 14 chr5 14487494 14487773 -188597759 + AluSx SINE Alu 1 276 -36 459 0 0 0 chr5 14487773 14487824 -188597708 + (TG)n Simple_repeat Simple_repeat 2 52 0 484 290 116 99 chr5 14489802 14490340 -188595192 - L1M2 LINE L1 -5708 1141 585 216 0 0 0 chr5 14490340 14490364 -188595168 + (CGG)n Simple_repeat Simple_repeat 3 26 0 484 290 116 99 chr5 14490364 14490586 -188594946 - L1M2 LINE L1 -6264 585 368 203 204 0 23 chr5 14491785 14491829 -188593703 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 417 206 186 0 chr5 14491892 14491989 -188593543 + L2 LINE L2 3192 3306 -7 621 262 12 23 chr5 14492192 14492364 -188593168 + MER5B DNA MER1_type 7 176 -2 393 253 74 79 chr5 14492376 14492566 -188592966 + MER5A DNA MER1_type 1 189 0 344 271 12 0 chr5 14492582 14492667 -188592865 - MER5A DNA MER1_type -87 102 17 593 219 84 11 chr5 14493487 14493665 -188591867 + MER3 DNA MER1_type 19 209 0 1468 156 58 56 chr5 14494905 14495265 -188590267 + MER46B DNA MER2_type 1 236 0 226 214 0 0 chr5 14497230 14497272 -188588260 + GA-rich Low_complexity Low_complexity 1 42 0 695 264 153 42 chr5 14498989 14499537 -188585995 + L2 LINE L2 2687 3312 -1 25 0 0 0 chr5 14502554 14502579 -188582953 + AT_rich Low_complexity Low_complexity 1 25 0 204 304 94 47 chr5 14505898 14506069 -188579463 - MIR SINE MIR -56 206 28 442 313 99 30 chr5 14506761 14506994 -188578538 - MIR SINE MIR 0 262 14 2762 70 3 8 chr5 14508211 14508580 -188576952 - L1PA8 LINE L1 -1 6171 5805 224 303 11 11 chr5 14509044 14509133 -188576399 + L2 LINE L2 2968 3056 -257 328 136 136 12 chr5 14509152 14509233 -188576299 - Charlie1 DNA MER1_type -1 2760 2670 621 275 38 0 chr5 14509258 14509469 -188576063 - Charlie1 DNA MER1_type -2536 225 7 217 296 70 26 chr5 14509491 14509606 -188575926 + L2 LINE L2 3106 3225 -88 2174 122 26 0 chr5 14509783 14510087 -188575445 - AluSx SINE Alu 0 312 1 989 193 17 0 chr5 14510596 14510777 -188574755 + AluSc SINE Alu 117 300 -9 1976 116 7 0 chr5 14511072 14511347 -188574185 + AluSq SINE Alu 29 305 -8 417 173 27 55 chr5 14513138 14513248 -188572284 + LTR33 LTR ERVL 114 220 -301 421 296 40 11 chr5 14513264 14513440 -188572092 + LTR33 LTR ERVL 341 521 0 403 343 85 45 chr5 14514319 14514957 -188570575 - L1M4 LINE L1 -3216 2930 2268 24 0 0 0 chr5 14515178 14515202 -188570330 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr5 14515632 14515653 -188569879 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr5 14515733 14515777 -188569755 + AT_rich Low_complexity Low_complexity 1 44 0 2234 114 0 7 chr5 14516052 14516349 -188569183 - AluSg SINE Alu -15 295 1 24 67 0 0 chr5 14518463 14518508 -188567024 + AT_rich Low_complexity Low_complexity 1 45 0 289 310 44 44 chr5 14518734 14518892 -188566640 - MER5A DNA MER1_type -1 188 31 * 358 314 26 39 chr5 14518755 14518911 -188566621 + MER5A DNA MER1_type 35 188 -1 1241 239 136 21 chr5 14519094 14519529 -188566003 + MLT1D LTR MaLR 21 505 0 198 288 201 29 chr5 14519611 14519750 -188565782 - MIR SINE MIR -48 214 52 4698 100 29 0 chr5 14519778 14520459 -188565073 - L1PA14 LINE L1 0 6161 5461 1334 212 0 47 chr5 14520511 14520808 -188564724 + AluJo SINE Alu 13 295 -17 28 0 0 0 chr5 14521470 14521498 -188564034 + AT_rich Low_complexity Low_complexity 1 28 0 559 309 78 9 chr5 14522235 14522452 -188563080 - MIR SINE MIR -2 260 29 383 240 12 29 chr5 14522482 14522653 -188562879 + L1ME LINE L1 5135 5302 -844 572 291 97 15 chr5 14522711 14523103 -188562429 + L1ME LINE L1 5350 5773 -397 2319 123 5 46 chr5 14523129 14523302 -188562230 + HSMAR2 DNA Mariner 2 181 -1121 2213 95 3 0 chr5 14523302 14523621 -188561911 + AluSp SINE Alu 1 320 0 2319 123 5 46 chr5 14523621 14523862 -188561670 + HSMAR2 DNA Mariner 181 400 -902 402 100 29 0 chr5 14523896 14523966 -188561566 + HSMAR2 DNA Mariner 1230 1301 -1 345 205 0 0 chr5 14524136 14524248 -188561284 + (TA)n Simple_repeat Simple_repeat 1 112 0 2073 128 3 3 chr5 14525220 14525525 -188560007 + AluSg SINE Alu 1 305 -5 472 288 58 17 chr5 14526230 14526470 -188559062 + MER41B LTR ERV1 181 430 -205 365 258 25 55 chr5 14527029 14527177 -188558355 + MIR SINE MIR 93 233 -29 1239 217 239 11 chr5 14529275 14529630 -188555902 + L1MD2 LINE L1 5687 5960 -399 231 114 0 0 chr5 14529630 14529665 -188555867 + (CA)n Simple_repeat Simple_repeat 2 36 0 1239 217 239 11 chr5 14529665 14529844 -188555688 + L1MD2 LINE L1 5960 6343 -16 190 179 36 0 chr5 14529991 14530047 -188555485 + GA-rich Low_complexity Low_complexity 3 60 0 1744 183 121 7 chr5 14530986 14531417 -188554115 + MER31A LTR ERV1 1 480 -5 4447 208 47 21 chr5 14531516 14532453 -188553079 + MER45B DNA AcHobo 2 968 -613 2147 141 0 7 chr5 14532453 14532757 -188552775 - AluSx SINE Alu -10 302 1 4447 208 47 21 chr5 14532757 14532821 -188552711 + MER45B DNA AcHobo 968 1029 -11 2683 77 9 0 chr5 14533023 14533373 -188552159 - THE1A LTR MaLR -2 353 1 204 309 49 89 chr5 14533629 14533752 -188551780 + L2 LINE L2 3063 3180 -92 2177 123 3 0 chr5 14535147 14535448 -188550084 + AluSg SINE Alu 1 302 -8 696 283 86 47 chr5 14536524 14537058 -188548474 + MLT1H1 LTR MaLR 1 555 0 21 57 0 0 chr5 14537215 14537250 -188548282 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr5 14537299 14537319 -188548213 + (T)n Simple_repeat Simple_repeat 1 20 0 2348 83 0 7 chr5 14538140 14538440 -188547092 + AluY SINE Alu 1 298 -13 2307 249 30 31 chr5 14538460 14538600 -188546932 + L1ME2 LINE L1 5381 5520 -644 2264 166 36 24 chr5 14538600 14539021 -188546511 - MSTB LTR MaLR 0 426 1 2307 249 30 31 chr5 14539021 14539467 -188546065 + L1ME2 LINE L1 5520 5968 -196 183 80 0 0 chr5 14539467 14539492 -188546040 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 2307 249 30 31 chr5 14539492 14539679 -188545853 + L1ME2 LINE L1 5968 6154 -10 2273 75 0 26 chr5 14540280 14540619 -188544913 - AluY SINE Alu 0 311 1 668 257 74 0 chr5 14540621 14540823 -188544709 - MER58A DNA MER1_type -6 218 2 337 308 67 47 chr5 14541354 14541607 -188543925 + L3 LINE CR1 1314 1571 -6 294 258 21 43 chr5 14543443 14543536 -188541996 - L2 LINE L2 0 3313 3223 903 146 0 7 chr5 14544715 14544852 -188540680 - FRAM SINE Alu -18 158 23 549 0 0 0 chr5 14544918 14544979 -188540553 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 216 158 0 0 chr5 14544979 14545017 -188540515 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 760 164 0 22 chr5 14545017 14545151 -188540381 - FLAM_C SINE Alu -2 131 1 2076 109 0 70 chr5 14546546 14546877 -188538655 - AluSg SINE Alu -2 308 1 334 307 92 6 chr5 14547236 14547399 -188538133 - L1ME4a LINE L1 -22 6099 5923 242 92 58 42 chr5 14547955 14548075 -188537457 + (TTATA)n Simple_repeat Simple_repeat 5 126 0 210 129 81 0 chr5 14548103 14548165 -188537367 + (TA)n Simple_repeat Simple_repeat 2 68 0 859 58 53 12 chr5 14548347 14548518 -188537014 + (TG)n Simple_repeat Simple_repeat 1 178 0 318 82 71 0 chr5 14548564 14548649 -188536883 + (TG)n Simple_repeat Simple_repeat 1 91 0 246 339 51 17 chr5 14548927 14549045 -188536487 + MIR SINE MIR 51 172 -90 1543 150 0 0 chr5 14549682 14549902 -188535630 + AluSg/x SINE Alu 86 305 -7 1352 238 75 23 chr5 14550180 14550617 -188534915 - MLT1C LTR MaLR -6 461 2 2104 135 0 7 chr5 14551144 14551448 -188534084 - AluSx SINE Alu -8 304 3 285 332 72 10 chr5 14551491 14551684 -188533848 + MLT1I LTR MaLR 5 209 -200 1624 157 8 4 chr5 14552280 14552547 -188532985 + AluSx SINE Alu 42 309 -3 27 73 0 0 chr5 14553470 14553525 -188532007 + AT_rich Low_complexity Low_complexity 1 55 0 1589 146 3 106 chr5 14553859 14554180 -188531352 - AluJb SINE Alu -14 288 1 450 312 37 21 chr5 14554862 14555051 -188530481 + L2 LINE L2 3106 3297 -16 2483 82 0 3 chr5 14555795 14556101 -188529431 + AluSg SINE Alu 1 305 -5 42 0 0 0 chr5 14556241 14556283 -188529249 + AT_rich Low_complexity Low_complexity 1 42 0 1145 135 140 0 chr5 14556621 14556828 -188528704 + MER46A DNA MER2_type 1 236 0 221 300 30 80 chr5 14558245 14558345 -188527187 - MIR SINE MIR -147 115 21 2229 113 0 0 chr5 14559324 14559626 -188525906 + AluSc SINE Alu 8 309 0 2064 125 3 19 chr5 14559768 14560079 -188525453 - AluSx SINE Alu -6 306 1 180 0 0 0 chr5 14561126 14561146 -188524386 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 260 270 0 0 chr5 14562200 14562263 -188523269 - MIR SINE MIR -23 239 177 1196 131 44 48 chr5 14562302 14562508 -188523024 + AluJo SINE Alu 6 210 -102 261 283 135 10 chr5 14562658 14562754 -188522778 - MIR SINE MIR -95 113 16 338 263 291 28 chr5 14563120 14563299 -188522233 + MIR SINE MIR 24 249 -13 1555 174 9 62 chr5 14563926 14564247 -188521285 - AluJo SINE Alu -8 304 1 286 284 0 23 chr5 14564281 14564369 -188521163 + MIR SINE MIR 177 262 0 355 275 265 28 chr5 14565736 14565947 -188519585 + L2 LINE L2 2815 2975 -338 1973 127 35 0 chr5 14565947 14566230 -188519302 + AluSc SINE Alu 1 293 -16 355 275 265 28 chr5 14566230 14566414 -188519118 + L2 LINE L2 2975 3304 -9 277 288 62 0 chr5 14566821 14566901 -188518631 - MIR3 SINE MIR 0 208 124 25 31 0 0 chr5 14567815 14567847 -188517685 + AT_rich Low_complexity Low_complexity 1 32 0 31 0 0 0 chr5 14567916 14567947 -188517585 + AT_rich Low_complexity Low_complexity 1 31 0 567 211 139 36 chr5 14569279 14569473 -188516059 - L2 LINE L2 -1 3312 3099 649 325 146 2 chr5 14569545 14570003 -188515529 - L2 LINE L2 -337 2977 2454 1556 159 35 0 chr5 14571211 14571443 -188514089 - AluJo SINE Alu -36 276 37 637 294 134 43 chr5 14573823 14574375 -188511157 - L1MEd LINE L1 -5233 886 285 2139 171 13 50 chr5 14575287 14575331 -188510201 - L1MC3 LINE L1 -19 7766 7722 2217 112 10 0 chr5 14575331 14575625 -188509907 + AluSp SINE Alu 1 297 -16 2139 171 13 50 chr5 14575625 14576055 -188509477 - L1MC3 LINE L1 -63 7722 7310 351 0 0 0 chr5 14576132 14576171 -188509361 + (TA)n Simple_repeat Simple_repeat 2 40 0 2312 91 0 0 chr5 14576171 14576468 -188509064 - AluY SINE Alu -14 297 1 1049 171 23 0 chr5 14578111 14578286 -188507246 + AluSg/x SINE Alu 129 307 -5 1873 149 3 37 chr5 14581041 14581362 -188504170 - AluJb SINE Alu -2 310 1 423 301 29 0 chr5 14581520 14581656 -188503876 - MIR SINE MIR -26 236 97 1509 174 0 46 chr5 14582573 14582876 -188502656 - AluJo SINE Alu 0 312 32 5037 147 12 20 chr5 14584204 14585491 -188500041 - L1PA13 LINE L1 -21 6142 4864 369 0 0 0 chr5 14585837 14585878 -188499654 + (TG)n Simple_repeat Simple_repeat 2 42 0 525 246 29 6 chr5 14586400 14586571 -188498961 - MER96B DNA MER1_type? -241 176 2 1130 163 49 0 chr5 14586617 14586801 -188498731 + AluJb SINE Alu 86 278 -34 519 135 0 0 chr5 14586801 14586897 -188498635 + (GA)n Simple_repeat Simple_repeat 1 96 0 824 303 101 51 chr5 14587622 14588691 -188496841 - L2 LINE L2 0 3313 2197 657 296 107 70 chr5 14590129 14590548 -188494984 + L1MC/D LINE L1 4181 4583 -1661 297 75 0 0 chr5 14590548 14590588 -188494944 + (TG)n Simple_repeat Simple_repeat 1 40 0 657 296 107 70 chr5 14590588 14591415 -188494117 + L1MC/D LINE L1 4583 5478 -766 406 266 32 19 chr5 14591721 14591875 -188493657 + GA-rich Low_complexity Low_complexity 4 159 0 23 33 0 0 chr5 14592015 14592045 -188493487 + AT_rich Low_complexity Low_complexity 1 30 0 1362 204 137 0 chr5 14592767 14593125 -188492407 - MER63B DNA MER1_type -29 407 1 2289 249 47 20 chr5 14593792 14594572 -188490960 - L1ME1 LINE L1 -50 6116 5316 22 56 0 0 chr5 14594965 14595001 -188490531 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr5 14595535 14595571 -188489961 + AT_rich Low_complexity Low_complexity 1 36 0 195 167 0 0 chr5 14595812 14595854 -188489678 + (CA)n Simple_repeat Simple_repeat 2 43 0 950 194 0 11 chr5 14596040 14596215 -188489317 + AluJb SINE Alu 137 309 -3 736 241 25 63 chr5 14596534 14596771 -188488761 - MIR SINE MIR -21 241 14 208 318 0 16 chr5 14597578 14597704 -188487828 + (TA)n Simple_repeat Simple_repeat 1 124 0 330 26 0 0 chr5 14597704 14597743 -188487789 + (TG)n Simple_repeat Simple_repeat 2 40 0 236 284 0 16 chr5 14597823 14597950 -188487582 + (TA)n Simple_repeat Simple_repeat 1 125 0 1659 143 42 4 chr5 14597985 14598244 -188487288 + AluSx SINE Alu 1 269 -43 474 136 0 0 chr5 14598244 14598310 -188487222 + Alu SINE Alu 219 284 -26 21 71 0 0 chr5 14599127 14599169 -188486363 + AT_rich Low_complexity Low_complexity 1 42 0 24 53 0 0 chr5 14599670 14599708 -188485824 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr5 14600571 14600601 -188484931 + AT_rich Low_complexity Low_complexity 1 30 0 291 259 140 28 chr5 14602601 14602744 -188482788 - L2 LINE L2 -231 3082 2924 324 300 94 11 chr5 14604639 14604819 -188480713 - L1MC5 LINE L1 -64 7897 7703 417 284 58 8 chr5 14604920 14605163 -188480369 - L1MC5 LINE L1 -370 7591 7337 239 235 59 0 chr5 14605448 14605499 -188480033 + L2 LINE L2 3210 3263 -9 1203 192 43 34 chr5 14606766 14606918 -188478614 + MLT1A1 LTR MaLR 10 159 -206 2269 88 3 61 chr5 14606918 14607247 -188478285 + AluY SINE Alu 1 310 -1 1203 192 43 34 chr5 14607247 14607443 -188478089 + MLT1A1 LTR MaLR 159 361 -4 251 313 61 10 chr5 14607446 14607545 -188477987 - L2 LINE L2 -19 3294 3191 29 47 0 0 chr5 14607685 14607728 -188477804 + AT_rich Low_complexity Low_complexity 1 43 0 605 276 74 10 chr5 14607766 14607969 -188477563 + L2 LINE L2 62 277 -3037 246 62 0 0 chr5 14609441 14609473 -188476059 + (CTG)n Simple_repeat Simple_repeat 1 32 0 333 369 43 0 chr5 14611384 14611525 -188474007 + MIR SINE MIR 6 152 -110 633 272 56 12 chr5 14611619 14611869 -188473663 + L1MA9 LINE L1 6015 6275 -37 222 318 82 0 chr5 14612221 14612306 -188473226 + L2 LINE L2 2544 2635 -679 2201 115 3 0 chr5 14613818 14614113 -188471419 + AluSx SINE Alu 1 296 -16 212 330 52 31 chr5 14614869 14614966 -188470566 - L3b LINE CR1 -4 1579 1481 1604 160 7 41 chr5 14615127 14615421 -188470111 - AluJo SINE Alu -19 293 10 245 318 24 12 chr5 14615482 14615567 -188469965 + MER5A DNA MER1_type 12 97 -92 2132 116 3 3 chr5 14615840 14616132 -188469400 + AluSx SINE Alu 4 295 -17 252 229 85 102 chr5 14616590 14616708 -188468824 - MIR SINE MIR -71 137 22 26 0 0 0 chr5 14616798 14616824 -188468708 + AT_rich Low_complexity Low_complexity 1 26 0 793 216 6 23 chr5 14617291 14617462 -188468070 + MER45A DNA AcHobo 9 176 -2 24 0 0 0 chr5 14619129 14619153 -188466379 + AT_rich Low_complexity Low_complexity 1 24 0 1223 171 4 34 chr5 14619166 14619400 -188466132 + AluJo SINE Alu 83 309 -3 214 149 21 21 chr5 14619429 14619476 -188466056 + (TA)n Simple_repeat Simple_repeat 1 47 0 942 147 21 0 chr5 14619998 14620141 -188465391 - AluSg/x SINE Alu -20 290 145 1374 176 8 31 chr5 14621042 14621303 -188464229 + AluJo SINE Alu 37 291 -21 1898 237 60 21 chr5 14621439 14621525 -188464007 + L1M4 LINE L1 4066 4147 -1999 243 0 0 0 chr5 14621525 14621552 -188463980 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1898 237 60 21 chr5 14621552 14622116 -188463416 + L1M4 LINE L1 4147 4741 -1405 788 149 65 0 chr5 14622635 14622789 -188462743 - L1MA9 LINE L1 -6 6306 6143 1534 69 0 5 chr5 14622789 14622988 -188462544 + L1PA8 LINE L1 5967 6169 -3 32 0 0 0 chr5 14622988 14623020 -188462512 + AT_rich Low_complexity Low_complexity 1 32 0 478 169 0 0 chr5 14623030 14623113 -188462419 - L1MA9 LINE L1 -173 6139 6057 709 176 7 0 chr5 14623116 14623258 -188462274 + L1MA9 LINE L1 5898 6040 -272 625 176 0 0 chr5 14623269 14623371 -188462161 + Tigger3(Golem) DNA MER2_type 9 110 -2919 * 3782 104 60 53 chr5 14623360 14624107 -188461425 + Tigger3(Golem) DNA MER2_type 2277 3028 -1 189 0 0 0 chr5 14624194 14624215 -188461317 + (CA)n Simple_repeat Simple_repeat 2 22 0 213 384 88 8 chr5 14624273 14624398 -188461134 - MIR SINE MIR -115 147 13 559 344 166 11 chr5 14624418 14624773 -188460759 + L2 LINE L2 1757 2166 -1148 204 67 0 0 chr5 14624931 14624961 -188460571 + (TAGG)n Simple_repeat Simple_repeat 2 31 0 2296 107 0 25 chr5 14625042 14625360 -188460172 + AluSq SINE Alu 1 310 -3 417 249 16 124 chr5 14626517 14626710 -188458822 + MIR SINE MIR 90 261 -1 195 314 0 0 chr5 14626814 14626865 -188458667 + L2 LINE L2 3215 3265 -7 218 287 293 7 chr5 14627453 14627603 -188457929 + MIR3 SINE MIR 10 202 -6 2339 160 82 29 chr5 14630824 14631087 -188454445 + MER6A DNA MER2_type 67 315 -550 2006 151 10 0 chr5 14631087 14631386 -188454146 - AluSx SINE Alu -10 302 1 2339 160 82 29 chr5 14631386 14631634 -188453898 + MER6A DNA MER2_type 315 605 0 388 260 20 10 chr5 14631790 14631890 -188453642 - MIR SINE MIR -47 215 115 2306 170 85 4 chr5 14631890 14632432 -188453100 + L1MB4 LINE L1 5595 6180 0 330 272 22 66 chr5 14632435 14632571 -188452961 - MIR SINE MIR -132 130 1 181 266 137 73 chr5 14632913 14633037 -188452495 + L2 LINE L2 3138 3269 -3 2053 136 7 0 chr5 14636527 14636828 -188448704 + AluSx SINE Alu 1 303 -9 696 258 95 28 chr5 14637162 14637445 -188448087 + LTR16A LTR ERVL 56 357 -93 217 318 61 0 chr5 14637725 14637791 -188447741 - L2 LINE L2 -22 3291 3222 409 263 44 18 chr5 14638942 14639056 -188446476 - MER5A DNA MER1_type -65 124 8 1881 137 43 10 chr5 14639517 14639816 -188445716 + AluSq SINE Alu 2 310 -3 2111 108 14 3 chr5 14640091 14640388 -188445144 + AluSq SINE Alu 1 300 -13 410 273 62 0 chr5 14641102 14641230 -188444302 + MIR SINE MIR 124 259 -3 1766 181 3 10 chr5 14641233 14641547 -188443985 - AluJo SINE Alu 0 312 1 3857 86 0 0 chr5 14641557 14642067 -188443465 + L1PB1 LINE L1 5641 6150 -1 514 250 31 66 chr5 14642118 14642314 -188443218 + MER5A DNA MER1_type 1 189 0 2265 96 0 19 chr5 14644935 14645247 -188440285 + AluSx SINE Alu 1 306 -6 1713 136 27 0 chr5 14645697 14645955 -188439577 - AluSx SINE Alu -9 303 39 262 231 179 43 chr5 14645999 14646116 -188439416 + MIR SINE MIR 130 262 0 513 279 18 18 chr5 14646309 14646474 -188439058 + MER5B DNA MER1_type 14 178 0 566 209 41 102 chr5 14646996 14647240 -188438292 - MER106A DNA MER1_type -5 231 3 367 149 27 0 chr5 14648746 14648820 -188436712 + L1MB8 LINE L1 6097 6172 -6 477 307 47 25 chr5 14648995 14649272 -188436260 + L1MEd LINE L1 543 825 -5294 596 82 0 0 chr5 14649355 14649440 -188436092 - AluY SINE Alu -9 302 218 1048 218 87 3 chr5 14649517 14649815 -188435717 + L1ME1 LINE L1 5517 5839 -327 1808 112 7 86 chr5 14649884 14650020 -188435512 + AluSx SINE Alu 1 101 -211 2281 96 3 16 chr5 14650020 14650334 -188435198 + AluSg SINE Alu 1 310 0 1808 112 7 86 chr5 14650334 14650501 -188435031 + AluSx SINE Alu 101 280 -32 192 40 0 0 chr5 14650501 14650526 -188435006 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1933 136 36 7 chr5 14650573 14650875 -188434657 + AluSx SINE Alu 1 311 -1 911 200 109 115 chr5 14650898 14651468 -188434064 + L1MB5 LINE L1 5599 6166 -8 258 248 73 9 chr5 14651651 14651760 -188433772 + L1 LINE L1 4224 4339 -1807 327 314 64 59 chr5 14651985 14652174 -188433358 + L1ME3 LINE L1 4821 5014 -1132 1951 129 18 0 chr5 14652174 14652511 -188433021 + AluSx SINE Alu 1 342 0 327 314 64 59 chr5 14652511 14652556 -188432976 + L1ME3 LINE L1 5014 5057 -1089 465 304 96 29 chr5 14652720 14653367 -188432165 + L1ME3 LINE L1 5257 5946 -216 499 271 85 34 chr5 14655238 14655474 -188430058 - MIR SINE MIR -3 259 12 1213 169 111 29 chr5 14656621 14656773 -188428759 - AluJb SINE Alu 0 302 164 2237 121 0 6 chr5 14656773 14657087 -188428445 - AluSq SINE Alu 0 313 2 1213 169 111 29 chr5 14657087 14657213 -188428319 - AluJb SINE Alu -138 164 1 196 326 49 12 chr5 14657757 14657891 -188427641 - MIR SINE MIR -68 140 3 321 346 57 13 chr5 14659685 14659844 -188425688 + MIR SINE MIR 97 262 0 185 108 27 0 chr5 14660098 14660135 -188425397 + (TA)n Simple_repeat Simple_repeat 1 38 0 203 161 0 0 chr5 14660282 14660313 -188425219 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr5 14661316 14661339 -188424193 + AT_rich Low_complexity Low_complexity 1 23 0 983 265 71 82 chr5 14662366 14662997 -188422535 - MLT1E3 LTR MaLR 0 624 1 289 353 39 13 chr5 14663357 14663510 -188422022 - L2 LINE L2 0 3272 3116 387 0 0 0 chr5 14663531 14663574 -188421958 + (TG)n Simple_repeat Simple_repeat 1 43 0 1678 165 4 14 chr5 14663578 14663857 -188421675 - AluJb SINE Alu -33 279 4 435 238 111 22 chr5 14663924 14664105 -188421427 + MIR SINE MIR 5 201 -61 312 375 21 0 chr5 14665238 14665382 -188420150 + MIR SINE MIR 108 254 -8 2056 124 0 23 chr5 14666951 14667250 -188418282 + AluSx SINE Alu 1 292 -20 276 229 176 46 chr5 14669239 14669392 -188416140 + MLT1J2 LTR MaLR 256 428 -22 350 324 87 27 chr5 14670393 14670578 -188414954 + MIR SINE MIR 51 246 -16 317 326 0 16 chr5 14672061 14672190 -188413342 - L1MEc LINE L1 -4604 1792 1666 514 93 0 23 chr5 14672338 14672424 -188413108 - Alu SINE Alu -3 309 226 868 251 56 48 chr5 14672426 14672928 -188412604 - L1MEc LINE L1 -4915 1481 976 1631 263 140 6 chr5 14672941 14673568 -188411964 - L1MEc LINE L1 -5466 930 220 936 158 14 53 chr5 14674940 14675201 -188410331 + MLT1A1 LTR MaLR 3 365 0 2540 265 149 50 chr5 14675230 14676976 -188408556 - HAL1 LINE L1 -421 2086 168 417 238 54 81 chr5 14676977 14677162 -188408370 + MER104 DNA Tc2 1 180 0 393 272 221 26 chr5 14678237 14678432 -188407100 + MIR SINE MIR 30 262 0 384 267 144 28 chr5 14679419 14679599 -188405933 - MIR SINE MIR -13 249 49 273 386 18 6 chr5 14679789 14679952 -188405580 + L3 LINE CR1 995 1159 -418 241 327 40 7 chr5 14680873 14681023 -188404509 + L2 LINE L2 1949 2103 -1211 381 348 148 28 chr5 14681145 14681536 -188403996 + L2 LINE L2 2342 2779 -535 44 63 0 0 chr5 14681547 14681626 -188403906 + AT_rich Low_complexity Low_complexity 1 79 0 2160 101 0 0 chr5 14683572 14683850 -188401682 + AluSg SINE Alu 1 278 -32 351 44 0 0 chr5 14683852 14683897 -188401635 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 190 243 27 54 chr5 14683918 14683992 -188401540 - MIR SINE MIR -126 136 65 24 32 0 0 chr5 14684339 14684370 -188401162 + AT_rich Low_complexity Low_complexity 1 31 0 216 294 153 0 chr5 14685408 14685493 -188400039 - MIR SINE MIR -109 153 56 770 328 153 33 chr5 14685762 14686665 -188398867 - L3 LINE CR1 -7 1570 560 268 240 62 27 chr5 14687100 14687246 -188398286 + Charlie7 DNA MER1_type 2462 2612 0 212 319 0 0 chr5 14687389 14687458 -188398074 - MIR3 SINE MIR -41 167 99 21 0 0 0 chr5 14690624 14690645 -188394887 + AT_rich Low_complexity Low_complexity 1 21 0 422 0 38 0 chr5 14690665 14690718 -188394814 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 578 307 109 60 chr5 14690746 14691322 -188394210 - L2 LINE L2 -37 3276 2665 324 0 0 0 chr5 14694477 14694513 -188391019 + (CA)n Simple_repeat Simple_repeat 2 37 0 2280 88 7 0 chr5 14695248 14695544 -188389988 - AluY SINE Alu -13 298 1 608 265 100 28 chr5 14695893 14696142 -188389390 + LTR7 LTR ERV1 184 450 0 275 365 7 0 chr5 14696428 14696573 -188388959 - HAL1b LINE L1 -829 519 374 779 147 6 0 chr5 14697312 14697489 -188388043 + CT-rich Low_complexity Low_complexity 1 178 0 183 42 0 0 chr5 14697489 14697513 -188388019 + (TTCC)n Simple_repeat Simple_repeat 4 27 0 574 282 55 0 chr5 14697939 14698194 -188387338 + L1ME3A LINE L1 4638 4906 -1240 427 246 42 36 chr5 14698312 14698479 -188387053 + L1ME3A LINE L1 5065 5232 -914 852 281 69 46 chr5 14698533 14698635 -188386897 + L1ME3A LINE L1 5301 5399 -771 2534 114 6 0 chr5 14698635 14698996 -188386536 + THE1B LTR MaLR 1 363 -1 852 281 69 46 chr5 14698996 14699459 -188386073 + L1ME3A LINE L1 5399 5879 -291 355 91 127 0 chr5 14699479 14699534 -188385998 + MADE1 DNA Mariner 1 62 -18 21 36 0 0 chr5 14700627 14700655 -188384877 + AT_rich Low_complexity Low_complexity 1 28 0 1445 203 57 0 chr5 14702761 14703042 -188382490 - AluJb SINE Alu -15 297 1 412 183 61 0 chr5 14703267 14703349 -188382183 - MIR SINE MIR -90 172 86 1786 140 122 33 chr5 14704010 14704403 -188381129 - MSTA LTR MaLR 0 428 1 2201 135 0 0 chr5 14705604 14705908 -188379624 + AluSx SINE Alu 1 304 -8 24 77 0 0 chr5 14706700 14706752 -188378780 + AT_rich Low_complexity Low_complexity 1 52 0 32 43 0 0 chr5 14707303 14707349 -188378183 + AT_rich Low_complexity Low_complexity 1 46 0 346 105 64 23 chr5 14707830 14708001 -188377531 + (TA)n Simple_repeat Simple_repeat 2 179 0 256 280 190 10 chr5 14708933 14709033 -188376499 - L2 LINE L2 -6 3266 3149 242 213 33 90 chr5 14710513 14710635 -188374897 - L2 LINE L2 -104 3209 3095 302 238 95 48 chr5 14710658 14710763 -188374769 - L2 LINE L2 -512 2802 2693 1255 257 118 47 chr5 14710991 14711586 -188373946 + MLT1E2 LTR MaLR 1 626 0 591 325 23 52 chr5 14711609 14711914 -188373618 - L2 LINE L2 -829 2485 2190 2295 211 35 7 chr5 14712028 14712482 -188373050 + MLT1C LTR MaLR 1 467 0 22 0 0 0 chr5 14712612 14712634 -188372898 + AT_rich Low_complexity Low_complexity 1 22 0 1299 285 38 77 chr5 14713411 14714224 -188371308 + L2 LINE L2 2186 2957 -315 23 33 0 0 chr5 14714747 14714777 -188370755 + AT_rich Low_complexity Low_complexity 1 30 0 219 233 19 0 chr5 14715602 14715667 -188369865 - MIR SINE MIR -62 146 95 2952 83 5 5 chr5 14716150 14716524 -188369008 + THE1C LTR MaLR 1 374 -1 2020 127 0 20 chr5 14716676 14716976 -188368556 + AluSx SINE Alu 1 294 -18 578 307 109 60 chr5 14769796 14770372 -188315160 + L2 LINE L2 2665 3276 -37 351 0 0 0 chr5 14770400 14770439 -188315093 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 468 289 121 25 chr5 14772474 14772713 -188312819 - L3 LINE CR1 -756 821 560 268 240 62 27 chr5 14773148 14773294 -188312238 + Charlie7 DNA MER1_type 2462 2612 0 212 319 0 0 chr5 14773437 14773506 -188312026 - MIR3 SINE MIR -41 167 99 203 161 0 0 chr5 14773954 14773985 -188311547 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 185 108 27 0 chr5 14774132 14774169 -188311363 + (TA)n Simple_repeat Simple_repeat 1 38 0 306 342 63 13 chr5 14774423 14774581 -188310951 - MIR SINE MIR 0 262 97 23 0 0 0 chr5 14776424 14776447 -188309085 + AT_rich Low_complexity Low_complexity 1 23 0 241 327 40 7 chr5 14777336 14777486 -188308046 + L2 LINE L2 1949 2103 -1211 381 348 148 28 chr5 14777608 14777999 -188307533 + L2 LINE L2 2342 2779 -535 43 64 0 0 chr5 14778010 14778088 -188307444 + AT_rich Low_complexity Low_complexity 1 78 0 1058 165 23 0 chr5 14779024 14779200 -188306332 - AluSg/x SINE Alu -4 308 129 637 290 107 27 chr5 14780253 14780998 -188304534 - L1ME3 LINE L1 -216 5946 5148 1941 129 18 0 chr5 14781110 14781443 -188304089 - AluSx SINE Alu 0 338 1 327 336 47 8 chr5 14781443 14781571 -188303961 - L1ME3 LINE L1 -1130 5016 4884 9245 106 18 4 chr5 14781746 14783161 -188302371 + L1P LINE L1 2762 4195 -1951 302 238 95 48 chr5 14783387 14783492 -188302040 + L2 LINE L2 2693 2802 -512 242 213 33 90 chr5 14783515 14783637 -188301895 + L2 LINE L2 3095 3209 -104 180 323 194 0 chr5 14785117 14785210 -188300322 + L2 LINE L2 3149 3259 -13 344 171 26 26 chr5 14785398 14785474 -188300058 + L1MC1 LINE L1 6244 6319 -14 6373 134 16 36 chr5 14786789 14788020 -188297512 + L1P3 LINE L1 28 1123 -5023 271 203 31 117 chr5 14789588 14789716 -188295816 - MER104 DNA Tc2 -63 117 1 256 321 36 9 chr5 14789717 14789829 -188295703 + HAL1 LINE L1 168 282 -2225 995 273 172 40 chr5 14789914 14790735 -188294797 + HAL1 LINE L1 418 1346 -1161 393 272 221 26 chr5 14791393 14791588 -188293944 + MIR SINE MIR 30 262 0 346 105 64 23 chr5 14792949 14793120 -188292412 + (TA)n Simple_repeat Simple_repeat 2 179 0 32 43 0 0 chr5 14793601 14793647 -188291885 + AT_rich Low_complexity Low_complexity 1 46 0 24 77 0 0 chr5 14794198 14794250 -188291282 + AT_rich Low_complexity Low_complexity 1 52 0 2144 102 0 0 chr5 14794514 14794789 -188290743 + AluSg SINE Alu 4 278 -32 351 44 0 0 chr5 14794791 14794836 -188290696 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 190 243 27 54 chr5 14794857 14794931 -188290601 - MIR SINE MIR -126 136 65 24 32 0 0 chr5 14795278 14795309 -188290223 + AT_rich Low_complexity Low_complexity 1 31 0 216 294 153 0 chr5 14796347 14796432 -188289100 - MIR SINE MIR -109 153 56 190 303 174 58 chr5 14796701 14797011 -188288521 - L3 LINE CR1 -7 1570 1225 384 267 144 28 chr5 14797315 14797495 -188288037 - MIR SINE MIR -13 249 49 273 386 18 6 chr5 14797685 14797848 -188287684 + L3 LINE CR1 995 1159 -418 336 24 0 0 chr5 14798812 14798853 -188286679 + (GA)n Simple_repeat Simple_repeat 2 42 0 396 191 67 0 chr5 14798861 14798950 -188286582 - L1M4 LINE L1 -1202 4944 4850 288 266 0 0 chr5 14799332 14799396 -188286136 + L2 LINE L2 3250 3313 0 180 383 32 0 chr5 14799944 14800038 -188285494 + MIR SINE MIR 76 172 -90 418 165 0 25 chr5 14800137 14800216 -188285316 - THE1B LTR MaLR 0 364 288 601 230 27 0 chr5 14800226 14800374 -188285158 - L1P LINE L1 -3529 2617 2466 2201 135 0 0 chr5 14800943 14801247 -188284285 + AluSx SINE Alu 1 304 -8 270 0 0 0 chr5 14802910 14802940 -188282592 + (CA)n Simple_repeat Simple_repeat 2 31 0 2260 92 7 0 chr5 14803676 14803971 -188281561 - AluY SINE Alu -14 297 1 247 264 27 18 chr5 14805697 14805807 -188279725 + L1MEc LINE L1 36 146 -6250 1396 188 89 0 chr5 14806208 14806512 -188279020 + MER2 DNA MER2_type 8 338 -7 408 160 80 0 chr5 14807715 14807790 -188277742 - L1PA16 LINE L1 -9 6157 6077 258 282 137 55 chr5 14808225 14808679 -188276853 - L1MEd LINE L1 -5321 798 308 2280 166 13 50 chr5 14809612 14809656 -188275876 - L1MC3 LINE L1 -19 7766 7722 2188 112 10 0 chr5 14809656 14809950 -188275582 + AluSp SINE Alu 1 297 -16 2280 166 13 50 chr5 14809950 14810380 -188275152 - L1MC3 LINE L1 -63 7722 7310 243 0 0 0 chr5 14810457 14810484 -188275048 + (TA)n Simple_repeat Simple_repeat 2 28 0 2211 95 3 0 chr5 14810484 14810778 -188274754 - AluY SINE Alu -16 295 1 2056 124 0 23 chr5 14812119 14812418 -188273114 + AluSx SINE Alu 1 292 -20 813 175 8 0 chr5 14814394 14814519 -188271013 + MER1B DNA MER1_type 21 146 -151 376 20 78 0 chr5 14814519 14814570 -188270962 - MLT2A2 LTR ERVL 0 453 399 369 162 0 0 chr5 14814570 14814638 -188270894 + (CA)n Simple_repeat Simple_repeat 1 68 0 203 318 16 0 chr5 14814648 14814711 -188270821 + (CATA)n Simple_repeat Simple_repeat 4 67 0 234 245 0 43 chr5 14814711 14814805 -188270727 + L1MC4 LINE L1 6614 6703 -1339 246 208 0 0 chr5 14814808 14814861 -188270671 + (TA)n Simple_repeat Simple_repeat 1 53 0 2870 108 0 26 chr5 14814861 14815285 -188270247 - MLT2A2 LTR ERVL -40 413 1 722 196 76 71 chr5 14815292 14815476 -188270056 + MER1B DNA MER1_type 155 339 0 1881 135 35 0 chr5 14816896 14817178 -188268354 + AluSc SINE Alu 1 292 -17 337 281 158 14 chr5 14817823 14817962 -188267570 + MIR SINE MIR 35 193 -69 373 385 7 7 chr5 14818756 14818891 -188266641 + MER91A DNA MER1_type 15 149 -47 303 183 42 0 chr5 14819557 14819628 -188265904 + L1MB7 LINE L1 6106 6179 -5 555 307 47 25 chr5 14819798 14820075 -188265457 + L1MEd LINE L1 543 825 -5294 594 82 0 0 chr5 14820158 14820243 -188265289 - AluY SINE Alu -9 302 218 1132 218 87 3 chr5 14820320 14820618 -188264914 + L1ME1 LINE L1 5517 5839 -327 1800 112 7 86 chr5 14820687 14820823 -188264709 + AluSx SINE Alu 1 101 -211 2264 96 3 16 chr5 14820823 14821137 -188264395 + AluSg SINE Alu 1 310 0 1800 112 7 86 chr5 14821137 14821304 -188264228 + AluSx SINE Alu 101 280 -32 192 40 0 0 chr5 14821304 14821329 -188264203 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1902 136 36 7 chr5 14821376 14821678 -188263854 + AluSx SINE Alu 1 311 -1 1044 200 109 115 chr5 14821701 14822271 -188263261 + L1MB5 LINE L1 5599 6166 -8 1540 159 35 0 chr5 14823756 14823988 -188261544 - AluJo SINE Alu -36 276 37 21 36 0 0 chr5 14826813 14826841 -188258691 + AT_rich Low_complexity Low_complexity 1 28 0 1445 203 57 0 chr5 14828946 14829227 -188256305 - AluJb SINE Alu -15 297 1 412 183 61 0 chr5 14829452 14829534 -188255998 - MIR SINE MIR -90 172 86 966 167 19 89 chr5 14830195 14830464 -188255068 - THE1B LTR MaLR 0 364 115 500 271 85 34 chr5 14832190 14832426 -188253106 - MIR SINE MIR -3 259 12 1200 169 111 29 chr5 14833566 14833718 -188251814 - AluJb SINE Alu 0 302 164 2213 121 0 6 chr5 14833718 14834032 -188251500 - AluSq SINE Alu 0 313 2 1200 169 111 29 chr5 14834032 14834158 -188251374 - AluJb SINE Alu -138 164 1 407 215 11 21 chr5 14834739 14834832 -188250700 + LTR7 LTR ERV1 359 450 0 275 365 7 0 chr5 14835118 14835263 -188250269 - HAL1b LINE L1 -829 519 374 807 140 0 0 chr5 14836021 14836192 -188249340 + (CCTG)n Simple_repeat Simple_repeat 2 172 0 299 65 22 0 chr5 14836181 14836227 -188249305 + (TTCC)n Simple_repeat Simple_repeat 4 50 0 * 574 282 55 0 chr5 14836653 14836908 -188248624 + L1ME3A LINE L1 4638 4906 -1240 427 246 42 36 chr5 14837026 14837193 -188248339 + L1ME3A LINE L1 5065 5232 -914 889 282 71 39 chr5 14837247 14837348 -188248184 + L1ME3A LINE L1 5301 5397 -773 2371 114 17 3 chr5 14837348 14837706 -188247826 + THE1B LTR MaLR 1 363 -1 889 282 71 39 chr5 14837706 14838165 -188247367 + L1ME3A LINE L1 5397 5879 -291 355 91 127 0 chr5 14838185 14838240 -188247292 + MADE1 DNA Mariner 1 62 -18 1057 137 11 16 chr5 14839233 14839416 -188246116 - L1MC1 LINE L1 -83 6250 6069 435 193 18 97 chr5 14839463 14839510 -188246022 - L1MC1 LINE L1 -2171 5637 5588 243 79 0 0 chr5 14839510 14839548 -188245984 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 1706 119 4 8 chr5 14839548 14839785 -188245747 - AluSg SINE Alu -28 282 47 435 193 18 97 chr5 14839785 14839856 -188245676 - L1MC1 LINE L1 -2218 5590 5533 228 182 0 0 chr5 14840540 14840584 -188244948 + (TG)n Simple_repeat Simple_repeat 1 44 0 971 128 0 0 chr5 14840584 14840782 -188244750 - L1P3 LINE L1 -4677 1469 1272 1061 93 0 0 chr5 14840785 14840924 -188244608 + L1P3 LINE L1 946 1084 -5377 726 244 107 99 chr5 14841911 14842276 -188243256 + MER57B LTR ERV1 67 434 0 1875 140 35 77 chr5 14843148 14843577 -188241955 - L1 LINE L1 -1801 4345 3935 22 35 0 0 chr5 14844182 14844211 -188241321 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr5 14844616 14844644 -188240888 + AT_rich Low_complexity Low_complexity 1 28 0 1555 254 94 31 chr5 14845395 14846001 -188239531 + HsTC2a DNA Tc2 14 657 -87 240 191 36 12 chr5 14846041 14846125 -188239407 + CT-rich Low_complexity Low_complexity 3 88 0 983 265 71 82 chr5 14846771 14847402 -188238130 - MLT1E3 LTR MaLR 0 624 1 289 353 39 13 chr5 14847762 14847915 -188237617 - L2 LINE L2 0 3272 3116 369 0 0 0 chr5 14847936 14847977 -188237555 + (TG)n Simple_repeat Simple_repeat 1 41 0 1678 165 4 14 chr5 14847981 14848260 -188237272 - AluJb SINE Alu -33 279 4 435 238 111 22 chr5 14848327 14848508 -188237024 + MIR SINE MIR 5 201 -61 350 324 87 27 chr5 14850629 14850814 -188234718 + MIR SINE MIR 51 246 -16 317 326 0 16 chr5 14852300 14852429 -188233103 - L1MEc LINE L1 -4604 1792 1666 514 93 0 23 chr5 14852577 14852663 -188232869 - Alu SINE Alu -3 308 225 2313 257 126 30 chr5 14852665 14853816 -188231716 - L1MEc LINE L1 -4915 1481 220 225 219 87 0 chr5 14854886 14854962 -188230570 + MIR3 SINE MIR 99 159 -49 887 306 84 19 chr5 14855425 14855885 -188229647 + L2 LINE L2 2752 3253 -60 204 385 32 37 chr5 14855917 14856135 -188229397 - MIR SINE MIR -30 232 16 458 312 64 64 chr5 14856175 14856505 -188229027 - L2 LINE L2 -436 2878 2549 353 131 35 35 chr5 14856660 14856805 -188228727 + (TA)n Simple_repeat Simple_repeat 2 146 0 1914 163 0 3 chr5 14857329 14857636 -188227896 - AluJb SINE Alu -6 306 1 208 236 101 22 chr5 14857726 14857815 -188227717 + MIR SINE MIR 112 207 -55 986 170 72 26 chr5 14858421 14858479 -188227053 - L1P LINE L1 -3630 2516 2462 519 60 0 0 chr5 14858479 14858546 -188226986 + (TA)n Simple_repeat Simple_repeat 2 68 0 986 170 72 26 chr5 14858546 14858752 -188226780 - L1P LINE L1 -3684 2462 2240 1611 178 41 46 chr5 14858752 14859118 -188226414 - THE1B LTR MaLR 0 364 1 2457 217 16 9 chr5 14861638 14862187 -188223345 - MER74A LTR ERVL 0 558 6 21 36 0 0 chr5 14862259 14862287 -188223245 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr5 14862718 14862739 -188222793 + AT_rich Low_complexity Low_complexity 1 21 0 2127 130 0 0 chr5 14862916 14863216 -188222316 - AluSx SINE Alu -12 300 1 555 203 149 31 chr5 14863922 14864144 -188221388 + MER46C DNA MER2_type 86 333 -5 197 274 39 0 chr5 14864764 14864815 -188220717 + L2 LINE L2 3214 3266 -6 1943 147 10 0 chr5 14865435 14865727 -188219805 + AluSx SINE Alu 1 295 -17 505 110 20 20 chr5 14865732 14865832 -188219700 + (GGAA)n Simple_repeat Simple_repeat 1 100 0 347 289 60 27 chr5 14866644 14866793 -188218739 + MIR3 SINE MIR 20 173 -35 318 104 0 0 chr5 14867071 14867119 -188218413 - MADE1 DNA Mariner 0 80 33 500 266 149 0 chr5 14867393 14867581 -188217951 - MIR SINE MIR -43 219 4 453 279 127 23 chr5 14867633 14867950 -188217582 - L1ME3A LINE L1 -338 5832 5479 1781 192 3 3 chr5 14869420 14869728 -188215804 - AluJo SINE Alu -4 308 1 2025 127 0 20 chr5 14870728 14871028 -188214504 - AluSx SINE Alu -18 294 1 2762 83 5 5 chr5 14871180 14871554 -188213978 - THE1C LTR MaLR -1 374 1 216 233 19 0 chr5 14872038 14872103 -188213429 + MIR SINE MIR 95 146 -62 23 33 0 0 chr5 14872928 14872958 -188212574 + AT_rich Low_complexity Low_complexity 1 30 0 1320 294 69 71 chr5 14873300 14874294 -188211238 - L2 LINE L2 -126 3187 2186 22 0 0 0 chr5 14875071 14875093 -188210439 + AT_rich Low_complexity Low_complexity 1 22 0 2088 211 35 7 chr5 14875222 14875676 -188209856 - MLT1C LTR MaLR 0 467 1 402 305 0 58 chr5 14875790 14875964 -188209568 + L2 LINE L2 2190 2353 -961 2076 245 2 27 chr5 14876172 14876301 -188209231 - MER82 DNA MER2_type -140 513 382 2454 49 26 10 chr5 14876301 14876607 -188208925 - AluY SINE Alu 0 311 1 2076 245 2 27 chr5 14876607 14877000 -188208532 - MER82 DNA MER2_type -271 382 4 316 231 185 9 chr5 14877066 14877174 -188208358 - L2 LINE L2 -1 3312 3186 * 350 322 151 5 chr5 14877171 14877269 -188208263 - MIR SINE MIR -10 252 170 208 50 0 50 chr5 14877269 14877309 -188208223 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 350 322 151 5 chr5 14877309 14877409 -188208123 - MIR SINE MIR -92 170 25 921 251 0 0 chr5 14877414 14877617 -188207915 - MLT1A1 LTR MaLR -7 358 156 1822 123 4 14 chr5 14877944 14878221 -188207311 + AluSq SINE Alu 28 301 -12 1218 203 66 11 chr5 14878920 14879191 -188206341 - AluJo SINE Alu -16 296 11 28 48 0 0 chr5 14879212 14879254 -188206278 + AT_rich Low_complexity Low_complexity 1 42 0 2322 78 0 3 chr5 14879396 14879733 -188205799 - AluY SINE Alu 0 311 1 21 0 0 0 chr5 14879974 14879995 -188205537 + AT_rich Low_complexity Low_complexity 1 21 0 2501 18 0 11 chr5 14880050 14880333 -188205199 - AluYb8 SINE Alu 0 318 39 190 303 66 13 chr5 14881511 14881587 -188203945 - MIR SINE MIR -71 191 112 5038 146 15 22 chr5 14881793 14883030 -188202502 + L1PA13 LINE L1 4911 6142 -21 1478 179 0 46 chr5 14884359 14884661 -188200871 + AluJo SINE Alu 32 312 0 423 301 29 0 chr5 14885604 14885740 -188199792 + MIR SINE MIR 97 236 -26 1873 149 3 37 chr5 14885898 14886219 -188199313 + AluJb SINE Alu 1 310 -2 2480 71 3 3 chr5 14889575 14889885 -188195647 + AluY SINE Alu 1 310 -1 265 260 39 0 chr5 14890020 14890097 -188195435 - MIR3 SINE MIR -11 197 118 318 339 110 44 chr5 14892683 14893434 -188192098 + L2 LINE L2 1935 2780 -492 686 158 24 134 chr5 14893434 14893680 -188191852 - MER20 DNA MER1_type 0 219 1 318 339 110 44 chr5 14893680 14893997 -188191535 + L2 LINE L2 2780 3075 -197 235 276 17 0 chr5 14894627 14894685 -188190847 + L2 LINE L2 3210 3268 -4 251 288 42 8 chr5 14894789 14894907 -188190625 + MLT1K LTR MaLR 138 259 -329 312 326 16 16 chr5 14896003 14896132 -188189400 + L3 LINE CR1 326 454 -1123 2137 128 75 9 chr5 14896560 14897013 -188188519 - MER1A DNA MER1_type -4 525 1 267 269 183 32 chr5 14897017 14897203 -188188329 + L3 LINE CR1 672 885 -692 457 341 5 28 chr5 14897232 14897497 -188188035 - MIR SINE MIR 0 262 2 222 329 26 0 chr5 14897552 14897628 -188187904 + L3 LINE CR1 958 1035 -542 440 313 106 17 chr5 14897845 14898024 -188187508 + L3 LINE CR1 1371 1565 -12 243 0 0 0 chr5 14898186 14898213 -188187319 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1071 164 6 0 chr5 14898589 14898760 -188186772 - FRAM SINE Alu -4 172 1 397 240 46 139 chr5 14899474 14899612 -188185920 - L1M4 LINE L1 -791 5355 5206 2233 92 0 7 chr5 14899612 14899894 -188185638 + AluSq SINE Alu 17 296 -17 397 240 46 139 chr5 14899894 14900143 -188185389 - L1M4 LINE L1 -940 5206 5004 2232 232 41 41 chr5 14900353 14902278 -188183254 + L1M4b LINE L1 151 2160 -4799 1893 169 0 0 chr5 14902424 14902720 -188182812 + AluSg SINE Alu 1 296 -14 349 315 121 58 chr5 14903589 14904128 -188181404 - L2 LINE L2 -1122 2192 1620 2053 136 7 0 chr5 14906538 14906839 -188178693 + AluSx SINE Alu 1 303 -9 696 258 95 28 chr5 14907173 14907456 -188178076 + LTR16A LTR ERVL 56 357 -93 217 318 61 0 chr5 14907736 14907802 -188177730 - L2 LINE L2 -22 3291 3222 409 263 44 18 chr5 14908953 14909067 -188176465 - MER5A DNA MER1_type -65 124 8 1846 137 43 13 chr5 14909528 14909828 -188175704 + AluSq SINE Alu 2 310 -3 2111 108 14 3 chr5 14910103 14910400 -188175132 + AluSq SINE Alu 1 300 -13 410 273 62 0 chr5 14911114 14911242 -188174290 + MIR SINE MIR 124 259 -3 1590 175 23 10 chr5 14911245 14911553 -188173979 - AluJo SINE Alu 0 312 1 3857 86 0 0 chr5 14911563 14912073 -188173459 + L1PB1 LINE L1 5641 6150 -1 514 250 31 66 chr5 14912124 14912320 -188173212 + MER5A DNA MER1_type 1 189 0 2265 96 0 19 chr5 14914941 14915253 -188170279 + AluSx SINE Alu 1 306 -6 1713 136 27 0 chr5 14915703 14915961 -188169571 - AluSx SINE Alu -9 303 39 262 231 179 43 chr5 14916005 14916122 -188169410 + MIR SINE MIR 130 262 0 513 279 18 18 chr5 14916315 14916480 -188169052 + MER5B DNA MER1_type 14 178 0 566 209 41 102 chr5 14917001 14917245 -188168287 - MER106A DNA MER1_type -5 231 3 261 0 0 0 chr5 14919085 14919114 -188166418 + (TG)n Simple_repeat Simple_repeat 2 30 0 510 251 29 6 chr5 14919636 14919807 -188165725 - MER96B DNA MER1_type? -241 176 2 1142 158 49 0 chr5 14919853 14920037 -188165495 + AluJb SINE Alu 86 278 -34 519 135 0 0 chr5 14920037 14920133 -188165399 + (GA)n Simple_repeat Simple_repeat 1 96 0 824 303 101 51 chr5 14920858 14921927 -188163605 - L2 LINE L2 0 3313 2197 559 294 105 79 chr5 14923365 14923784 -188161748 + L1MC/D LINE L1 4181 4587 -1657 270 0 0 0 chr5 14923784 14923814 -188161718 + (TG)n Simple_repeat Simple_repeat 1 30 0 559 294 105 79 chr5 14923814 14924655 -188160877 + L1MC/D LINE L1 4587 5478 -766 406 266 32 19 chr5 14924961 14925115 -188160417 + GA-rich Low_complexity Low_complexity 4 159 0 23 33 0 0 chr5 14925255 14925285 -188160247 + AT_rich Low_complexity Low_complexity 1 30 0 1376 201 137 0 chr5 14926009 14926367 -188159165 - MER63B DNA MER1_type -29 407 1 299 308 35 21 chr5 14927034 14927177 -188158355 - L1ME1 LINE L1 -50 6116 5972 1650 214 58 8 chr5 14927486 14927974 -188157558 - L1MD1 LINE L1 -397 5769 5316 22 56 0 0 chr5 14928367 14928403 -188157129 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr5 14928936 14928972 -188156560 + AT_rich Low_complexity Low_complexity 1 36 0 195 167 0 0 chr5 14929212 14929254 -188156278 + (CA)n Simple_repeat Simple_repeat 2 43 0 950 194 0 11 chr5 14929439 14929614 -188155918 + AluJb SINE Alu 137 309 -3 736 241 25 63 chr5 14929933 14930170 -188155362 - MIR SINE MIR -21 241 14 208 318 0 16 chr5 14930977 14931103 -188154429 + (TA)n Simple_repeat Simple_repeat 1 124 0 348 24 0 0 chr5 14931103 14931144 -188154388 + (TG)n Simple_repeat Simple_repeat 2 42 0 236 284 0 16 chr5 14931224 14931351 -188154181 + (TA)n Simple_repeat Simple_repeat 1 125 0 1659 143 42 4 chr5 14931386 14931645 -188153887 + AluSx SINE Alu 1 269 -43 474 136 0 0 chr5 14931645 14931711 -188153821 + Alu SINE Alu 219 284 -26 21 71 0 0 chr5 14932528 14932570 -188152962 + AT_rich Low_complexity Low_complexity 1 42 0 24 53 0 0 chr5 14933218 14933256 -188152276 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr5 14934119 14934149 -188151383 + AT_rich Low_complexity Low_complexity 1 30 0 248 242 114 47 chr5 14936151 14936300 -188149232 - L2 LINE L2 -231 3082 2924 28 0 0 0 chr5 14940020 14940048 -188145484 + AT_rich Low_complexity Low_complexity 1 28 0 247 288 27 14 chr5 14940105 14940178 -188145354 - MIR3 SINE MIR -29 179 106 1811 153 0 4 chr5 14940878 14941152 -188144380 - AluSx SINE Alu -39 273 1 927 215 9 36 chr5 14941328 14941551 -188143981 + MER20 DNA MER1_type 3 219 0 453 248 222 7 chr5 14941561 14941714 -188143818 + MER5A DNA MER1_type 4 189 0 225 234 0 0 chr5 14943721 14943785 -188141747 + (TA)n Simple_repeat Simple_repeat 2 65 0 187 225 28 14 chr5 14943955 14944026 -188141506 + (CATATA)n Simple_repeat Simple_repeat 2 73 0 521 224 11 28 chr5 14944052 14944231 -188141301 + (CATATA)n Simple_repeat Simple_repeat 3 178 0 240 167 0 61 chr5 14944263 14944329 -188141203 - LTR66 LTR ERVL -172 438 377 884 306 92 34 chr5 14944590 14945058 -188140474 - L2 LINE L2 -4 3309 2815 1084 243 85 47 chr5 14945108 14945668 -188139864 + MER97c DNA MER1_type? 40 723 -367 3365 30 0 2 chr5 14945668 14946070 -188139462 - L1PA4 LINE L1 -3 6152 5752 1084 243 85 47 chr5 14946070 14946453 -188139079 + MER97c DNA MER1_type? 723 1090 0 2259 108 0 0 chr5 14946824 14947121 -188138411 + AluY SINE Alu 2 298 -13 1672 185 0 20 chr5 14947401 14947698 -188137834 - AluJo SINE Alu -21 291 1 22 35 0 0 chr5 14948278 14948307 -188137225 + AT_rich Low_complexity Low_complexity 1 29 0 239 172 0 17 chr5 14948480 14948538 -188136994 + CT-rich Low_complexity Low_complexity 3 59 0 480 315 38 46 chr5 14948630 14948868 -188136664 - MIR SINE MIR -10 252 17 227 283 104 0 chr5 14948920 14949026 -188136506 - L1ME LINE L1 -455 5666 5550 222 293 79 43 chr5 14950504 14950668 -188134864 + L2 LINE L2 3119 3288 -25 21 0 0 0 chr5 14950970 14950991 -188134541 + AT_rich Low_complexity Low_complexity 1 21 0 333 283 133 0 chr5 14951136 14951256 -188134276 + MIR SINE MIR 7 142 -120 2226 124 3 0 chr5 14951740 14952046 -188133486 - AluSg SINE Alu -3 307 1 486 291 23 102 chr5 14952207 14952472 -188133060 - MIR SINE MIR -4 258 15 2139 141 120 5 chr5 14952473 14952857 -188132675 + MSTA LTR MaLR 1 428 0 8928 179 19 12 chr5 14952857 14954496 -188131036 + MSTA-int LTR MaLR 1 1651 0 1986 171 119 10 chr5 14954496 14954882 -188130650 + MSTA LTR MaLR 1 428 0 2766 172 72 27 chr5 14955078 14955502 -188130030 - L1MA9 LINE L1 -67 6245 5781 396 0 0 0 chr5 14955502 14955546 -188129986 + (TG)n Simple_repeat Simple_repeat 2 45 0 2766 172 72 27 chr5 14955546 14955760 -188129772 - L1MA9 LINE L1 -531 5781 5578 359 248 66 22 chr5 14956344 14956481 -188129051 - L1ME4a LINE L1 -156 5965 5823 1336 226 27 6 chr5 14956626 14956954 -188128578 - MER58B DNA MER1_type -5 336 2 333 230 90 50 chr5 14957862 14957962 -188127570 - L2 LINE L2 0 3272 3169 496 301 87 18 chr5 14958073 14958292 -188127240 - MIR SINE MIR -21 241 8 207 281 16 16 chr5 14958341 14958405 -188127127 - L2 LINE L2 -253 3060 2997 337 264 221 24 chr5 14958493 14958701 -188126831 - L2 LINE L2 -503 2811 2563 2342 91 0 0 chr5 14958833 14959131 -188126401 - AluSg SINE Alu -12 298 1 29 78 0 0 chr5 14959392 14959456 -188126076 + AT_rich Low_complexity Low_complexity 1 64 0 218 31 0 31 chr5 14959554 14959586 -188125946 + (TA)n Simple_repeat Simple_repeat 2 32 0 1722 164 10 16 chr5 14960651 14960961 -188124571 + AluSx SINE Alu 1 308 -4 22 70 0 0 chr5 14962294 14962337 -188123195 + AT_rich Low_complexity Low_complexity 1 43 0 318 231 13 0 chr5 14962380 14962458 -188123074 - MLT1I LTR MaLR -2 407 329 268 340 40 10 chr5 14964117 14964217 -188121315 - L2 LINE L2 -16 3256 3154 312 328 84 0 chr5 14966082 14966213 -188119319 + L1ME4a LINE L1 5884 6025 -96 1423 246 35 71 chr5 14966425 14966945 -188118587 + MLT1E LTR MaLR 47 547 -46 887 282 60 0 chr5 14967087 14967420 -188118112 - L1ME1 LINE L1 -5 6161 5809 2461 53 3 3 chr5 14967463 14967763 -188117769 + AluY SINE Alu 1 300 -11 1035 174 0 0 chr5 14968710 14968871 -188116661 - AluJb SINE Alu -17 295 135 23 54 0 0 chr5 14968937 14968974 -188116558 + AT_rich Low_complexity Low_complexity 1 37 0 884 200 85 0 chr5 14969418 14969653 -188115879 - L1ME1 LINE L1 -90 6076 5822 24 0 0 0 chr5 14970662 14970686 -188114846 + AT_rich Low_complexity Low_complexity 1 24 0 2228 107 7 7 chr5 14970919 14971228 -188114304 + AluSc SINE Alu 1 309 0 2103 110 34 3 chr5 14971724 14972015 -188113517 - AluSx SINE Alu -12 300 1 21 0 0 0 chr5 14972035 14972056 -188113476 + AT_rich Low_complexity Low_complexity 1 21 0 507 257 72 0 chr5 14972191 14972343 -188113189 - MIR SINE MIR 0 262 100 417 340 70 0 chr5 14972434 14972619 -188112913 + MIR SINE MIR 65 262 0 27 62 0 0 chr5 14973191 14973239 -188112293 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr5 14973310 14973331 -188112201 + AT_rich Low_complexity Low_complexity 1 21 0 2252 114 0 16 chr5 14973956 14974264 -188111268 + AluSg SINE Alu 1 303 -7 255 332 70 2 chr5 14975106 14975277 -188110255 + MIR SINE MIR 5 185 -62 2391 73 0 22 chr5 14975282 14975595 -188109937 + AluY SINE Alu 1 306 -5 296 365 24 8 chr5 14975886 14976012 -188109520 - L3 LINE CR1 -1084 493 366 24 32 0 0 chr5 14976948 14976979 -188108553 + AT_rich Low_complexity Low_complexity 1 31 0 1022 167 0 0 chr5 14977317 14977518 -188108014 - AluSg/x SINE Alu 0 327 127 2175 121 3 3 chr5 14977519 14977826 -188107706 - AluSx SINE Alu -5 307 1 2255 120 25 33 chr5 14977910 14977950 -188107582 - THE1B LTR MaLR 0 364 325 2025 114 13 17 chr5 14977950 14978249 -188107283 + AluSx SINE Alu 1 298 -14 2255 120 25 33 chr5 14978249 14978575 -188106957 - THE1B LTR MaLR -39 325 1 184 341 83 15 chr5 14979735 14979863 -188105669 - MIR SINE MIR -55 153 20 283 342 171 0 chr5 14980334 14980486 -188105046 - L3 LINE CR1 -9 1568 1391 408 40 0 0 chr5 14980486 14980536 -188104996 + (CA)n Simple_repeat Simple_repeat 2 51 0 180 320 59 110 chr5 14981067 14981286 -188104246 - L3 LINE CR1 -218 1359 1152 30 27 0 0 chr5 14981352 14981389 -188104143 + AT_rich Low_complexity Low_complexity 1 37 0 696 266 80 11 chr5 14981458 14981863 -188103669 + L1PB4 LINE L1 5447 5884 -272 * 1912 185 15 10 chr5 14981552 14981963 -188103569 + L1MB8 LINE L1 5573 5985 -193 466 284 28 14 chr5 14982134 14982469 -188103063 - MLT1G1 LTR MaLR 0 588 217 2490 119 5 13 chr5 14983138 14983516 -188102016 - THE1C LTR MaLR 0 375 1 211 375 10 0 chr5 14984287 14984391 -188101141 - L2 LINE L2 -2 3311 3207 181 266 137 73 chr5 14985724 14985848 -188099684 - L2 LINE L2 -3 3269 3138 330 272 22 66 chr5 14986189 14986325 -188099207 + MIR SINE MIR 1 130 -132 2281 169 85 6 chr5 14986328 14986871 -188098661 - L1MB4 LINE L1 0 6180 5595 388 260 20 10 chr5 14986871 14986971 -188098561 + MIR SINE MIR 115 215 -47 2323 162 82 29 chr5 14987127 14987375 -188098157 - MER6A DNA MER2_type -260 605 372 2006 151 10 0 chr5 14987375 14987674 -188097858 + AluSx SINE Alu 1 302 -10 2323 162 82 29 chr5 14987674 14987937 -188097595 - MER6A DNA MER2_type -493 372 67 207 293 293 7 chr5 14991158 14991308 -188094224 - MIR3 SINE MIR -6 202 10 180 333 0 0 chr5 14991895 14991946 -188093586 - L2 LINE L2 -7 3265 3215 417 249 16 124 chr5 14992050 14992243 -188093289 - MIR SINE MIR -1 261 90 2304 107 0 25 chr5 14993400 14993719 -188091813 - AluSq SINE Alu -2 311 1 204 67 0 0 chr5 14993800 14993830 -188091702 + (CCTA)n Simple_repeat Simple_repeat 2 31 0 557 343 166 14 chr5 14993988 14994344 -188091188 - L2 LINE L2 -1148 2166 1757 213 384 88 8 chr5 14994364 14994489 -188091043 + MIR SINE MIR 13 147 -115 189 0 0 0 chr5 14994546 14994567 -188090965 + (TG)n Simple_repeat Simple_repeat 2 22 0 3715 99 59 49 chr5 14994730 14995445 -188090087 - Tigger3(Golem) DNA MER2_type -31 2998 2277 611 187 0 4 chr5 14995434 14995547 -188089985 - Tigger3(Golem) DNA MER2_type -2954 75 1 * 728 169 7 0 chr5 14995547 14995689 -188089843 - L1MA9 LINE L1 -272 6040 5898 478 169 0 0 chr5 14995692 14995775 -188089757 + L1MA9 LINE L1 6057 6139 -173 32 0 0 0 chr5 14995785 14995817 -188089715 + AT_rich Low_complexity Low_complexity 1 32 0 1534 69 0 5 chr5 14995817 14996021 -188089511 - L1PA8 LINE L1 -3 6169 5967 788 149 65 0 chr5 14996021 14996170 -188089362 + L1MA9 LINE L1 6143 6306 -6 1879 238 60 21 chr5 14996689 14997253 -188088279 - L1M4 LINE L1 -1405 4741 4147 243 0 0 0 chr5 14997253 14997280 -188088252 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1879 238 60 21 chr5 14997280 14997366 -188088166 - L1M4 LINE L1 -1999 4147 4066 1374 176 8 31 chr5 14997502 14997763 -188087769 - AluJo SINE Alu -21 291 37 942 147 21 0 chr5 14998663 14998806 -188086726 + AluSg/x SINE Alu 147 292 -20 214 149 21 21 chr5 14999328 14999375 -188086157 + (TA)n Simple_repeat Simple_repeat 1 47 0 1219 162 8 34 chr5 14999404 14999638 -188085894 - AluJo SINE Alu -2 310 83 24 0 0 0 chr5 14999651 14999675 -188085857 + AT_rich Low_complexity Low_complexity 1 24 0 793 216 6 23 chr5 15001341 15001512 -188084020 - MER45A DNA AcHobo -2 176 9 26 0 0 0 chr5 15001979 15002005 -188083527 + AT_rich Low_complexity Low_complexity 1 26 0 252 229 85 102 chr5 15002095 15002213 -188083319 + MIR SINE MIR 22 137 -71 2152 113 3 3 chr5 15002671 15002964 -188082568 - AluSx SINE Alu -16 296 4 245 318 24 12 chr5 15003237 15003322 -188082210 - MER5A DNA MER1_type -92 97 12 1604 160 7 41 chr5 15003383 15003677 -188081855 + AluJo SINE Alu 10 293 -19 212 330 52 31 chr5 15003838 15003935 -188081597 + L3b LINE CR1 1481 1579 -4 2177 119 3 0 chr5 15004689 15004984 -188080548 - AluSx SINE Alu -16 296 1 222 318 82 0 chr5 15006496 15006581 -188078951 - L2 LINE L2 -679 2635 2544 619 276 56 12 chr5 15006933 15007183 -188078349 - L1MA9 LINE L1 -37 6275 6015 333 369 43 0 chr5 15007277 15007418 -188078114 - MIR SINE MIR -110 152 6 246 62 0 0 chr5 15009329 15009361 -188076171 + (CAG)n Simple_repeat Simple_repeat 1 32 0 605 276 74 10 chr5 15010833 15011036 -188074496 - L2 LINE L2 -3037 277 62 29 47 0 0 chr5 15011074 15011117 -188074415 + AT_rich Low_complexity Low_complexity 1 43 0 251 313 61 10 chr5 15011257 15011356 -188074176 + L2 LINE L2 3191 3294 -19 1218 197 40 34 chr5 15011359 15011556 -188073976 - MLT1A1 LTR MaLR -4 361 160 2269 88 3 61 chr5 15011556 15011885 -188073647 - AluY SINE Alu -1 310 1 1218 197 40 34 chr5 15011885 15012037 -188073495 - MLT1A1 LTR MaLR -205 160 10 192 250 68 0 chr5 15013312 15013356 -188072176 - L2 LINE L2 -16 3256 3210 394 281 62 8 chr5 15013641 15013883 -188071649 + L1MC5 LINE L1 7337 7591 -370 334 296 101 11 chr5 15013984 15014163 -188071369 + L1MC5 LINE L1 7703 7897 -64 234 0 0 0 chr5 15064820 15064846 -188020686 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 218 318 0 0 chr5 15064896 15064959 -188020573 - MIR SINE MIR -162 100 38 223 245 128 43 chr5 15065203 15065297 -188020235 + MIR3 SINE MIR 10 111 -97 270 162 147 0 chr5 15065674 15065742 -188019790 + L1M LINE L1 5284 5361 -813 2176 155 51 0 chr5 15065742 15066096 -188019436 + MSTC LTR MaLR 1 372 -56 226 247 45 11 chr5 15066196 15066285 -188019247 + L1MC1 LINE L1 4296 4387 -1759 2514 184 80 11 chr5 15066295 15066819 -188018713 + L1MC1 LINE L1 5550 6115 -218 618 191 0 8 chr5 15066819 15066950 -188018582 + L1MB7 LINE L1 6055 6184 0 2514 184 80 11 chr5 15066950 15066978 -188018554 + L1MC1 LINE L1 6115 6140 -193 378 298 144 49 chr5 15068608 15068744 -188016788 - HAL1b LINE L1 -33 1315 1193 474 120 0 0 chr5 15068744 15068819 -188016713 + (TA)n Simple_repeat Simple_repeat 2 76 0 378 298 144 49 chr5 15068819 15069168 -188016364 - HAL1b LINE L1 -155 1193 784 187 219 47 31 chr5 15069168 15069232 -188016300 + MIR SINE MIR 191 255 -7 245 247 35 0 chr5 15069262 15069347 -188016185 - HAL1b LINE L1 -557 791 704 1655 176 22 25 chr5 15069348 15069705 -188015827 + MLT1A1 LTR MaLR 4 359 -6 2210 106 25 6 chr5 15070354 15070712 -188014820 - L1PA7 LINE L1 -867 5279 4915 6547 57 37 2 chr5 15070714 15071580 -188013952 + L1PA7 LINE L1 5258 6153 -1 530 282 0 0 chr5 15072037 15072161 -188013371 - MIR SINE MIR -42 220 97 1139 236 82 20 chr5 15072229 15072581 -188012951 - MLT1A2 LTR MaLR 0 374 1 873 222 44 0 chr5 15073114 15073317 -188012215 - MER20 DNA MER1_type -7 212 1 2638 187 24 2 chr5 15073738 15074272 -188011260 - L1MB4 LINE L1 -1 6179 5634 22 0 0 0 chr5 15074940 15074962 -188010570 + AT_rich Low_complexity Low_complexity 1 22 0 348 62 10 0 chr5 15075561 15075613 -188009919 - Alu SINE Alu -7 295 251 3814 219 15 25 chr5 15075614 15076601 -188008931 - L1P LINE L1 -822 5324 4347 6823 59 14 1 chr5 15076601 15077771 -188007761 + L1PA7 LINE L1 4952 6139 -15 3814 219 15 25 chr5 15077771 15077851 -188007681 - L1P LINE L1 -1799 4347 4268 663 158 0 0 chr5 15077892 15078006 -188007526 - L1MA2 LINE L1 0 6304 6191 2333 62 3 3 chr5 15079011 15079299 -188006233 + AluY SINE Alu 1 288 -23 211 229 66 0 chr5 15079369 15079430 -188006102 - MIR SINE MIR -49 213 149 266 293 0 27 chr5 15080173 15080248 -188005284 + L2 LINE L2 3145 3217 -55 1359 259 91 77 chr5 15081560 15082210 -188003322 + L2 LINE L2 2247 2905 -409 303 28 0 0 chr5 15082530 15082566 -188002966 + (CA)n Simple_repeat Simple_repeat 2 37 0 319 248 131 27 chr5 15082567 15082966 -188002566 + L1MC5 LINE L1 4151 7513 -448 1905 157 64 6 chr5 15083284 15083628 -188001904 + THE1B LTR MaLR 1 364 0 10513 99 33 29 chr5 15083628 15085202 -188000330 + THE1B-int LTR MaLR 1 1580 0 2165 111 38 54 chr5 15085202 15085572 -187999960 + THE1B LTR MaLR 1 364 0 642 282 80 50 chr5 15085643 15086220 -187999312 + L1MC/D LINE L1 4892 5480 -802 641 215 12 0 chr5 15086321 15086484 -187999048 + GA-rich Low_complexity Low_complexity 3 167 0 2112 128 0 0 chr5 15086521 15086809 -187998723 + AluSx SINE Alu 1 288 -24 396 331 126 53 chr5 15086919 15087182 -187998350 + L2 LINE L2 2874 3155 -158 581 260 18 40 chr5 15089706 15089929 -187995603 - MER20 DNA MER1_type 0 219 2 2323 101 3 3 chr5 15089981 15090289 -187995243 - AluSp SINE Alu 0 313 6 1448 209 34 90 chr5 15090677 15091130 -187994402 + MLT1D LTR MaLR 1 421 -84 1796 188 0 0 chr5 15091130 15091417 -187994115 + AluJo SINE Alu 4 290 -22 1448 209 34 90 chr5 15091417 15091498 -187994034 + MLT1D LTR MaLR 421 505 0 186 264 75 0 chr5 15091706 15091759 -187993773 + L2 LINE L2 3201 3257 -15 194 348 130 0 chr5 15093108 15093200 -187992332 + MIR SINE MIR 47 150 -112 2233 117 0 0 chr5 15093406 15093704 -187991828 - AluSg SINE Alu -12 298 1 28 61 0 0 chr5 15093822 15093871 -187991661 + AT_rich Low_complexity Low_complexity 1 49 0 883 213 51 121 chr5 15094055 15094259 -187991273 + Charlie4a DNA MER1_type 72 289 -1672 1551 123 111 0 chr5 15094259 15094502 -187991030 - AluSx SINE Alu -37 275 6 883 213 51 121 chr5 15094502 15094767 -187990765 + Charlie4a DNA MER1_type 289 508 0 391 238 24 0 chr5 15094825 15094909 -187990623 + MER5A DNA MER1_type 27 112 -77 26 0 0 0 chr5 15094961 15094987 -187990545 + AT_rich Low_complexity Low_complexity 1 26 0 2065 110 33 0 chr5 15095787 15096088 -187989444 - AluSq SINE Alu -2 311 1 4957 125 11 16 chr5 15096236 15097060 -187988472 - L1PA16 LINE L1 -5 6161 5342 1887 220 18 0 chr5 15097060 15097505 -187988027 + L1 LINE L1 3808 4260 -1886 * 2725 103 20 11 chr5 15097493 15097940 -187987592 + L1MA2 LINE L1 5806 6256 -48 2273 193 53 12 chr5 15099107 15099620 -187985912 - MER44D DNA MER2_type -16 589 1 1277 202 73 48 chr5 15100255 15100612 -187984920 + MLT1A2 LTR MaLR 5 370 -4 355 233 18 12 chr5 15101006 15101169 -187984363 + GA-rich Low_complexity Low_complexity 3 166 0 26 30 0 0 chr5 15101621 15101654 -187983878 + AT_rich Low_complexity Low_complexity 1 33 0 418 297 114 20 chr5 15102044 15102246 -187983286 - L1M4 LINE L1 -3025 3121 2901 228 67 0 0 chr5 15102526 15102556 -187982976 + (CAT)n Simple_repeat Simple_repeat 1 30 0 217 171 0 0 chr5 15104668 15104703 -187980829 - L3 LINE CR1 -978 599 565 1595 149 0 8 chr5 15104939 15105181 -187980351 + AluJo SINE Alu 64 303 -9 1740 162 23 44 chr5 15105457 15105845 -187979687 - MLT1B LTR MaLR -4 386 7 908 303 141 53 chr5 15105954 15106568 -187978964 - L2 LINE L2 0 3313 2644 1993 142 39 31 chr5 15106628 15106988 -187978544 + THE1B LTR MaLR 1 363 -1 572 115 50 86 chr5 15108170 15108309 -187977223 + MLT1B LTR MaLR 1 134 -256 712 113 75 23 chr5 15108330 15108463 -187977069 + THE1C LTR MaLR 3 142 -233 984 70 5 153 chr5 15108466 15108681 -187976851 + THE1C-int LTR MaLR 1398 1580 0 1710 150 102 40 chr5 15108681 15109034 -187976498 + THE1C LTR MaLR 1 375 0 1170 134 101 0 chr5 15109036 15109253 -187976279 + MLT1B LTR MaLR 152 390 0 327 25 0 0 chr5 15109262 15109302 -187976230 + (TG)n Simple_repeat Simple_repeat 2 41 0 207 0 0 0 chr5 15109462 15109485 -187976047 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 385 293 29 98 chr5 15110033 15110072 -187975460 - L1M4 LINE L1 -1851 4295 4255 2313 97 0 0 chr5 15110072 15110370 -187975162 + AluSx SINE Alu 1 298 -14 385 293 29 98 chr5 15110370 15110576 -187974956 - L1M4 LINE L1 -1891 4255 4067 226 206 68 0 chr5 15111866 15111939 -187973593 + L1ME1 LINE L1 6089 6166 0 332 140 0 0 chr5 15112079 15112129 -187973403 + LTR29 LTR ERV1 3 52 -570 296 310 41 0 chr5 15113410 15113555 -187971977 + L1M4 LINE L1 2699 2849 -3297 24 53 0 0 chr5 15113687 15113725 -187971807 + AT_rich Low_complexity Low_complexity 1 38 0 2067 134 0 0 chr5 15114003 15114328 -187971204 + AluSx SINE Alu 1 325 0 1579 168 50 92 chr5 15114550 15114680 -187970852 + MLT1B LTR MaLR 1 135 -255 2456 93 3 0 chr5 15114680 15114991 -187970541 + AluSx SINE Alu 1 312 0 1579 168 50 92 chr5 15114991 15115264 -187970268 + MLT1B LTR MaLR 135 387 -3 1194 260 140 22 chr5 15115548 15116697 -187968835 + L1MDa LINE L1 1687 2982 -3558 1037 225 42 123 chr5 15116755 15117076 -187968456 + MLT1F1 LTR MaLR 69 414 -153 428 0 19 0 chr5 15117076 15117128 -187968404 + (CA)n Simple_repeat Simple_repeat 1 53 0 1037 225 42 123 chr5 15117128 15117281 -187968251 + MLT1F1 LTR MaLR 414 496 -71 2139 135 0 0 chr5 15117281 15117585 -187967947 - AluSx SINE Alu -8 304 1 1037 225 42 123 chr5 15117585 15117652 -187967880 + MLT1F1 LTR MaLR 496 567 0 30 0 0 0 chr5 15117691 15117721 -187967811 + AT_rich Low_complexity Low_complexity 1 30 0 218 56 28 0 chr5 15117801 15117837 -187967695 + (TA)n Simple_repeat Simple_repeat 1 37 0 851 283 85 34 chr5 15117841 15118513 -187967019 + L1MDa LINE L1 3873 4578 -1962 2074 198 46 32 chr5 15118515 15119011 -187966521 + MLT1D LTR MaLR 3 505 0 1071 269 55 16 chr5 15119101 15119611 -187965921 + L1MDa LINE L1 4715 5244 -1296 362 265 73 60 chr5 15119646 15119880 -187965652 - Charlie2 DNA MER1_type -2516 266 30 2066 185 19 19 chr5 15120581 15120992 -187964540 + LTR57 LTR ERVL 1 411 0 401 330 144 3 chr5 15121186 15121471 -187964061 + L3 LINE CR1 560 884 -693 1314 304 95 13 chr5 15122188 15122891 -187962641 + MER69B DNA AcHobo 114 874 -352 595 199 121 48 chr5 15122891 15123057 -187962475 + MER20 DNA MER1_type 2 179 -40 1188 8 0 0 chr5 15123057 15123190 -187962342 + AluYb8 SINE Alu 184 316 -2 303 100 0 0 chr5 15123190 15123230 -187962302 + MER20 DNA MER1_type 172 211 -8 818 213 158 26 chr5 15123235 15123545 -187961987 + MER69B DNA AcHobo 863 1213 -13 712 261 132 69 chr5 15123583 15124062 -187961470 - MLT1H LTR MaLR 0 549 41 245 206 29 0 chr5 15124134 15124202 -187961330 - L1MEd LINE L1 -4992 1127 1058 1565 137 391 44 chr5 15124202 15124632 -187960900 - LTR18B LTR ERVL -13 601 23 612 294 64 47 chr5 15124648 15125114 -187960418 - L1MEd LINE L1 -5074 1045 572 2241 130 28 0 chr5 15125313 15125667 -187959865 - THE1B LTR MaLR 0 364 1 344 276 135 21 chr5 15125730 15125922 -187959610 - L1MEd LINE L1 -5904 215 2 25 0 0 0 chr5 15126559 15126584 -187958948 + AT_rich Low_complexity Low_complexity 1 25 0 1394 175 56 28 chr5 15126922 15127208 -187958324 - AluJo SINE Alu -8 294 1 195 69 0 0 chr5 15128233 15128262 -187957270 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 267 305 136 0 chr5 15128269 15128387 -187957145 - L2 LINE L2 0 3313 3180 598 298 41 25 chr5 15128420 15128736 -187956796 - L1MC/D LINE L1 -2162 5646 5326 1723 223 113 18 chr5 15128754 15129320 -187956212 - L1MC4a LINE L1 -114 7694 7075 285 361 19 7 chr5 15130350 15130505 -187955027 + MLT1I LTR MaLR 253 409 0 339 235 12 0 chr5 15130523 15130608 -187954924 - L1P5 LINE L1 -471 5680 5595 477 264 8 0 chr5 15130749 15130874 -187954658 - Charlie1 DNA MER1_type -7 2754 2629 242 179 0 75 chr5 15131497 15131564 -187953968 + CT-rich Low_complexity Low_complexity 3 64 0 202 143 16 48 chr5 15133745 15133808 -187951724 + (TA)n Simple_repeat Simple_repeat 2 62 0 193 93 0 47 chr5 15133945 15133988 -187951544 + (TA)n Simple_repeat Simple_repeat 1 41 0 2550 190 141 136 chr5 15135281 15135863 -187949669 - L1MD3 LINE L1 -7 7988 7411 502 220 17 8 chr5 15135863 15135981 -187949551 - MLT1F1 LTR MaLR -448 119 1 2550 190 141 136 chr5 15135981 15136543 -187948989 - L1MD3 LINE L1 -584 7411 6720 900 294 49 53 chr5 15137245 15137738 -187947794 - MLT1J LTR MaLR 0 511 21 24 32 0 0 chr5 15139562 15139593 -187945939 + AT_rich Low_complexity Low_complexity 1 31 0 503 230 37 15 chr5 15141379 15141514 -187944018 - MLT1E LTR MaLR -455 138 1 1330 210 162 125 chr5 15141572 15142158 -187943374 + MLT1E2 LTR MaLR 43 622 -4 185 208 42 10 chr5 15142314 15142410 -187943122 + (TA)n Simple_repeat Simple_repeat 1 99 0 1206 105 2 0 chr5 15143268 15143738 -187941794 + (CTA)n Simple_repeat Simple_repeat 1 471 0 4367 184 85 14 chr5 15143827 15145105 -187940427 - L1MA5A LINE L1 -5 6292 4939 6784 174 25 29 chr5 15145169 15145859 -187939673 - L1MA5A LINE L1 -1207 4939 4247 6919 60 8 0 chr5 15145859 15147219 -187938313 - L1PA7 LINE L1 -11 6143 4778 6784 174 25 29 chr5 15147219 15148030 -187937502 - L1MA5A LINE L1 -1899 4247 3445 4635 172 48 39 chr5 15148024 15149164 -187936368 + L1MA5A LINE L1 2296 3446 -2700 * 796 180 0 0 chr5 15149166 15149327 -187936205 - MER53 DNA DNA -28 161 1 2399 91 0 0 chr5 15149642 15149949 -187935583 - AluY SINE Alu -4 307 1 21 0 0 0 chr5 15150210 15150231 -187935301 + AT_rich Low_complexity Low_complexity 1 21 0 2075 161 70 0 chr5 15150239 15150611 -187934921 - L1MC3 LINE L1 -88 7697 7300 2134 132 0 16 chr5 15151416 15151719 -187933813 - AluSg SINE Alu -12 298 1 258 209 43 87 chr5 15153336 15153451 -187932081 - L2 LINE L2 -100 3213 3104 235 330 21 0 chr5 15153669 15153763 -187931769 - L2 LINE L2 -669 2645 2550 281 266 34 110 chr5 15154871 15155108 -187930424 + L2 LINE L2 2834 3052 -261 24 53 0 0 chr5 15155376 15155414 -187930118 + AT_rich Low_complexity Low_complexity 1 38 0 211 280 32 89 chr5 15156099 15156256 -187929276 + L2 LINE L2 3153 3300 -13 540 267 56 11 chr5 15156446 15156626 -187928906 - MER5A DNA MER1_type 0 189 2 310 312 172 13 chr5 15156915 15157072 -187928460 - MIR SINE MIR -67 195 14 283 325 67 8 chr5 15157485 15157605 -187927927 - MIR SINE MIR -113 149 23 342 265 31 10 chr5 15157715 15157813 -187927719 - L2 LINE L2 0 3313 3214 260 179 0 0 chr5 15157872 15157928 -187927604 + MLT2C2 LTR ERVL 1 56 -408 2080 273 111 36 chr5 15157928 15159182 -187926350 - L2 LINE L2 -124 3189 1835 192 158 0 0 chr5 15161019 15161057 -187924475 + (CA)n Simple_repeat Simple_repeat 2 39 0 2000 208 18 0 chr5 15161080 15161479 -187924053 - MLT2C2 LTR ERVL -58 406 1 23 33 0 0 chr5 15162200 15162230 -187923302 + AT_rich Low_complexity Low_complexity 1 30 0 772 52 0 0 chr5 15162233 15162330 -187923202 - L1PA7 LINE L1 -6 6148 6052 2120 130 45 28 chr5 15162941 15163294 -187922238 + THE1B LTR MaLR 6 364 0 492 336 86 12 chr5 15163297 15163541 -187921991 - MLT1K LTR MaLR -172 416 155 29 60 0 0 chr5 15163899 15163949 -187921583 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr5 15164292 15164316 -187921216 + AT_rich Low_complexity Low_complexity 1 24 0 5314 165 29 11 chr5 15164545 15165141 -187920391 - L1MA6 LINE L1 -4 6296 5712 261 0 0 0 chr5 15165141 15165170 -187920362 + (TA)n Simple_repeat Simple_repeat 2 30 0 5314 165 29 11 chr5 15165170 15165921 -187919611 - L1MA6 LINE L1 -588 5712 4924 22 0 0 0 chr5 15166727 15166749 -187918783 + AT_rich Low_complexity Low_complexity 1 22 0 734 299 83 64 chr5 15167084 15167560 -187917972 - MLT1G1 LTR MaLR -4 591 101 2468 129 11 5 chr5 15167560 15167933 -187917599 + THE1C LTR MaLR 1 375 0 734 299 83 64 chr5 15167933 15168021 -187917511 - MLT1G1 LTR MaLR -494 101 16 316 350 10 0 chr5 15168039 15168142 -187917390 - MIR SINE MIR -6 256 153 252 367 114 6 chr5 15168533 15168691 -187916841 - MIR3 SINE MIR -10 198 24 23 33 0 0 chr5 15169393 15169423 -187916109 + AT_rich Low_complexity Low_complexity 1 30 0 261 189 38 0 chr5 15169792 15169845 -187915687 + MLT1B LTR MaLR 1 55 -335 246 128 0 0 chr5 15170495 15170534 -187914998 + (A)n Simple_repeat Simple_repeat 1 39 0 965 218 29 124 chr5 15170537 15170923 -187914609 + MLT1B LTR MaLR 42 390 0 706 335 30 46 chr5 15171181 15171641 -187913891 + L1MB1 LINE L1 173 625 -5688 605 79 0 11 chr5 15171768 15171857 -187913675 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 2431 240 42 32 chr5 15171900 15173111 -187912421 + L1MB1 LINE L1 795 1895 -4489 10084 215 44 29 chr5 15173244 15173636 -187911896 + L1MB1 LINE L1 2170 2555 -3849 2187 173 28 30 chr5 15173636 15174063 -187911469 - MSTB LTR MaLR 0 426 1 10084 215 44 29 chr5 15174063 15174172 -187911360 + L1MB1 LINE L1 2555 2661 -3743 245 75 25 0 chr5 15174172 15174212 -187911320 + (TA)n Simple_repeat Simple_repeat 2 42 0 10084 215 44 29 chr5 15174212 15174372 -187911160 + L1MB1 LINE L1 2661 2817 -3587 1706 189 33 19 chr5 15174372 15174732 -187910800 - MLT1A1 LTR MaLR 0 365 1 10084 215 44 29 chr5 15174732 15174977 -187910555 + L1MB1 LINE L1 2817 3057 -3347 4129 162 25 6 chr5 15174977 15175685 -187909847 + MER72 LTR ERV1 1 722 0 10084 215 44 29 chr5 15175685 15176236 -187909296 + L1MB1 LINE L1 3057 3598 -2806 1363 255 28 6 chr5 15176236 15176593 -187908939 - MLT1A1 LTR MaLR 0 365 1 10084 215 44 29 chr5 15176593 15177401 -187908131 + L1MB1 LINE L1 3598 4393 -2011 386 52 0 17 chr5 15177401 15177459 -187908073 + (CA)n Simple_repeat Simple_repeat 2 58 0 10084 215 44 29 chr5 15177459 15177623 -187907909 + L1MB1 LINE L1 4393 4553 -1851 1817 219 14 0 chr5 15177623 15177980 -187907552 - MLT1A1 LTR MaLR 0 365 4 10084 215 44 29 chr5 15177980 15179467 -187906065 + L1MB1 LINE L1 4553 6155 -249 1117 226 80 50 chr5 15179696 15180059 -187905473 + MLT1A2 LTR MaLR 1 374 0 400 313 95 9 chr5 15184041 15184507 -187901025 + L1ME4a LINE L1 5316 5822 -299 306 264 85 0 chr5 15184606 15184712 -187900820 + L1ME4a LINE L1 6004 6118 -3 384 275 26 52 chr5 15187965 15188158 -187897374 - MIR SINE MIR -53 209 22 26 0 0 0 chr5 15188801 15188827 -187896705 + AT_rich Low_complexity Low_complexity 1 26 0 417 292 134 90 chr5 15191900 15192753 -187892779 + L1M2 LINE L1 291 1142 -5707 209 319 11 11 chr5 15193303 15193394 -187892138 + CT-rich Low_complexity Low_complexity 3 93 0 315 293 16 81 chr5 15195824 15195947 -187889585 - L2 LINE L2 0 3313 3199 236 273 0 45 chr5 15196591 15196679 -187888853 + MIR SINE MIR 172 255 -7 250 322 41 25 chr5 15197571 15197692 -187887840 - L2 LINE L2 0 3313 3191 894 171 84 60 chr5 15197890 15198281 -187887251 - MLT1C LTR MaLR 0 390 1 196 253 0 133 chr5 15198331 15198414 -187887118 - L2 LINE L2 -44 3269 3198 396 103 0 0 chr5 15199196 15199254 -187886278 + (TG)n Simple_repeat Simple_repeat 2 59 0 212 365 67 10 chr5 15200592 15200696 -187884836 - L3 LINE CR1 -249 1328 1219 656 181 44 0 chr5 15200700 15200882 -187884650 - Charlie5 DNA MER1_type 0 2624 2435 2313 93 0 0 chr5 15200882 15201184 -187884348 - AluY SINE Alu -9 302 1 180 303 79 46 chr5 15201212 15201364 -187884168 - L3 LINE CR1 -686 891 735 192 290 73 73 chr5 15201546 15201670 -187883862 - L3 LINE CR1 -1083 494 371 389 295 9 9 chr5 15201823 15201935 -187883597 - MIR3 SINE MIR -7 201 90 189 366 24 0 chr5 15202567 15202649 -187882883 + MIR SINE MIR 151 234 -28 354 100 0 0 chr5 15203814 15203874 -187881658 + (TC)n Simple_repeat Simple_repeat 2 61 0 277 260 24 51 chr5 15203876 15204245 -187881287 + MLT1G LTR MaLR 190 584 -6 516 250 18 0 chr5 15204741 15204909 -187880623 - MER104 DNA Tc2 -5 175 5 209 56 0 28 chr5 15205924 15205960 -187879572 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 213 372 28 28 chr5 15206441 15206586 -187878946 - MIR3 SINE MIR -6 202 58 2273 253 24 33 chr5 15207508 15208451 -187877081 + L1M4 LINE L1 2844 3778 -2368 1632 188 24 7 chr5 15208480 15208773 -187876759 - AluJb SINE Alu -14 298 1 688 137 41 14 chr5 15209059 15209205 -187876327 - L1MA8 LINE L1 -2 6289 6140 2106 232 58 62 chr5 15209691 15209808 -187875724 - L1ME1 LINE L1 -9 6226 6110 2239 116 0 0 chr5 15209808 15210109 -187875423 + AluSx SINE Alu 1 301 -11 2106 232 58 62 chr5 15210109 15210661 -187874871 - L1ME1 LINE L1 -125 6110 5558 2061 164 0 0 chr5 15210661 15210973 -187874559 - AluJb SINE Alu 0 312 1 2106 232 58 62 chr5 15210973 15211324 -187874208 - L1ME1 LINE L1 -677 5558 5207 2357 92 3 3 chr5 15211324 15211630 -187873902 - AluY SINE Alu -5 306 1 2106 232 58 62 chr5 15211630 15211949 -187873583 - L1ME1 LINE L1 -1028 5207 4888 2459 57 3 0 chr5 15211949 15212245 -187873287 - AluY SINE Alu -13 298 2 2106 232 58 62 chr5 15212245 15212766 -187872766 - L1ME1 LINE L1 -1347 4888 4376 887 270 22 32 chr5 15212767 15212965 -187872567 - L1PA13 LINE L1 -6512 275 76 2065 133 48 23 chr5 15212965 15213319 -187872213 - THE1B LTR MaLR -1 363 1 11204 103 13 4 chr5 15213319 15214884 -187870648 - THE1B-int LTR MaLR 0 1580 1 2061 124 47 47 chr5 15214884 15215077 -187870455 - THE1B LTR MaLR 0 364 169 2225 117 0 0 chr5 15215077 15215384 -187870148 - AluSq SINE Alu -6 307 1 2061 124 47 47 chr5 15215384 15215554 -187869978 - THE1B LTR MaLR -194 170 1 887 270 22 32 chr5 15215554 15215631 -187869901 - L1PA13 LINE L1 -6708 79 1 1795 282 79 27 chr5 15215650 15217761 -187867771 - L1ME1 LINE L1 -2440 3775 1598 685 132 0 0 chr5 15217867 15217981 -187867551 - MLT1A1-int LTR MaLR -1620 115 2 1698 224 6 8 chr5 15217983 15218349 -187867183 - MLT1A1 LTR MaLR 0 365 1 268 290 59 2 chr5 15218451 15218604 -187866928 + HAL1b LINE L1 372 1614 -815 192 234 0 0 chr5 15218779 15218826 -187866706 + (TA)n Simple_repeat Simple_repeat 1 47 0 241 271 24 0 chr5 15218829 15218914 -187866618 + L1MC4 LINE L1 6617 6703 -1339 192 152 0 0 chr5 15218917 15218950 -187866582 + (TA)n Simple_repeat Simple_repeat 2 34 0 654 211 0 0 chr5 15218996 15219110 -187866422 + FLAM_A SINE Alu 1 114 -19 470 304 104 47 chr5 15219177 15219648 -187865884 + L1ME3A LINE L1 4082 4579 -1567 3335 92 0 4 chr5 15219785 15220468 -187865064 + L1PA13 LINE L1 5509 6168 0 317 82 49 16 chr5 15220408 15220469 -187865063 + L1PA13 LINE L1 6101 6163 0 1439 128 179 0 chr5 15220601 15220858 -187864674 + AluJb SINE Alu 1 303 -9 299 291 56 42 chr5 15220912 15221125 -187864407 + L1ME3A LINE L1 5347 5562 -600 409 330 90 29 chr5 15221154 15221466 -187864066 + L1ME3A LINE L1 5528 5858 -312 21 0 0 0 chr5 15222293 15222314 -187863218 + AT_rich Low_complexity Low_complexity 1 21 0 2374 65 0 3 chr5 15223090 15223398 -187862134 + AluY SINE Alu 1 307 -4 291 140 0 0 chr5 15223622 15223672 -187861860 + (CA)n Simple_repeat Simple_repeat 1 50 0 22 35 0 0 chr5 15223959 15223988 -187861544 + AT_rich Low_complexity Low_complexity 1 29 0 415 342 45 23 chr5 15224329 15224639 -187860893 + L1M4 LINE L1 2892 3208 -2938 1517 161 14 3 chr5 15224639 15224930 -187860602 + L1MA9 LINE L1 6017 6310 -2 493 298 72 44 chr5 15225031 15225420 -187860112 + L1M4 LINE L1 3692 4091 -2055 1969 127 3 0 chr5 15225736 15226019 -187859513 + AluY SINE Alu 1 284 -27 222 91 0 0 chr5 15226023 15226056 -187859476 + (TAA)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr5 15226574 15226597 -187858935 + AT_rich Low_complexity Low_complexity 1 23 0 2087 99 3 13 chr5 15226933 15227236 -187858296 - AluSc SINE Alu -9 300 1 35 24 0 0 chr5 15228489 15228531 -187857001 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr5 15228714 15228743 -187856789 + AT_rich Low_complexity Low_complexity 1 29 0 1121 67 0 0 chr5 15231112 15231246 -187854286 - AluSg/x SINE Alu -23 289 156 206 320 0 0 chr5 15231412 15231462 -187854070 - MIR SINE MIR -62 146 97 25 95 0 0 chr5 15234441 15234515 -187851017 + AT_rich Low_complexity Low_complexity 1 74 0 201 332 128 33 chr5 15234738 15234949 -187850583 - L2 LINE L2 -570 2744 2514 1803 224 0 38 chr5 15235596 15236072 -187849460 + MER89 LTR ERV1 2 557 -2 1272 286 99 63 chr5 15236074 15236187 -187849345 + MER89-int LTR ERV1 1 108 -6693 1933 143 53 34 chr5 15236187 15236544 -187848988 - THE1B LTR MaLR 0 364 1 1272 286 99 63 chr5 15236544 15236599 -187848933 + MER89-int LTR ERV1 108 160 -6641 1975 134 137 13 chr5 15236599 15236980 -187848552 + MSTA LTR MaLR 1 428 0 1272 286 99 63 chr5 15236980 15237309 -187848223 + MER89-int LTR ERV1 160 534 -6267 261 0 0 0 chr5 15237309 15237338 -187848194 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 1272 286 99 63 chr5 15237338 15237534 -187847998 + MER89-int LTR ERV1 534 721 -6080 2425 251 73 24 chr5 15237584 15238338 -187847194 + MER89-int LTR ERV1 1741 2531 -4270 2350 255 90 58 chr5 15238503 15239457 -187846075 + MER89-int LTR ERV1 213 3328 -3473 2202 288 73 40 chr5 15239470 15240426 -187845106 + MER89-int LTR ERV1 3435 4422 -2379 975 255 15 22 chr5 15240447 15240714 -187844818 - MER89-int LTR ERV1 -2119 4682 4418 507 113 0 0 chr5 15240718 15240798 -187844734 + (GGAA)n Simple_repeat Simple_repeat 2 81 0 320 305 193 27 chr5 15240798 15241043 -187844489 - LTR16B LTR ERVL -151 313 22 1770 190 26 26 chr5 15241043 15241433 -187844099 + MLT1B LTR MaLR 1 390 0 320 305 193 27 chr5 15241433 15241446 -187844086 - LTR16B LTR ERVL -442 22 12 362 250 167 15 chr5 15241480 15241612 -187843920 - MIR SINE MIR -94 168 17 230 330 0 75 chr5 15242133 15242239 -187843293 + MIR3 SINE MIR 64 161 -47 24 0 0 0 chr5 15242642 15242666 -187842866 + AT_rich Low_complexity Low_complexity 1 24 0 185 136 0 23 chr5 15243337 15243381 -187842151 + (ATG)n Simple_repeat Simple_repeat 2 44 0 365 292 31 84 chr5 15243395 15243621 -187841911 - MIR SINE MIR -6 256 43 283 315 117 31 chr5 15243868 15244030 -187841502 + MIR3 SINE MIR 28 203 -5 1772 196 32 50 chr5 15244685 15245124 -187840408 - MSTB2 LTR MaLR -12 445 15 2196 161 57 43 chr5 15245198 15245590 -187839942 - L1MB8 LINE L1 -6 6172 5770 3125 133 36 82 chr5 15245590 15245871 -187839661 - MER7C DNA MER2_type -2426 602 310 2070 125 6 3 chr5 15245871 15246182 -187839350 + AluSx SINE Alu 1 312 0 3125 133 36 82 chr5 15246182 15246530 -187839002 - MER7C DNA MER2_type -2718 310 2 2196 161 57 43 chr5 15246530 15246666 -187838866 - L1MB8 LINE L1 -408 5770 5637 240 35 0 0 chr5 15246735 15246764 -187838768 + (TG)n Simple_repeat Simple_repeat 1 29 0 349 275 37 108 chr5 15347513 15347782 -187737750 + L1ME LINE L1 5548 5797 -324 231 259 0 0 chr5 15348108 15348162 -187737370 + L1ME LINE L1 5368 5421 -753 398 307 71 17 chr5 15348248 15348486 -187737046 + L1ME LINE L1 5497 5747 -374 16912 202 24 28 chr5 15348546 15351574 -187733958 + L1PA15 LINE L1 1990 4971 -2632 2256 89 7 3 chr5 15351574 15351866 -187733666 + AluSg SINE Alu 1 293 -17 16912 202 24 28 chr5 15351866 15354477 -187731055 + L1PA15 LINE L1 4971 7591 -12 185 359 113 0 chr5 15354494 15354600 -187730932 - L2 LINE L2 -33 3239 3122 330 264 38 0 chr5 15354888 15354994 -187730538 + (TA)n Simple_repeat Simple_repeat 2 111 0 195 129 0 0 chr5 15355011 15355042 -187730490 + (TA)n Simple_repeat Simple_repeat 2 32 0 226 217 0 0 chr5 15355042 15355111 -187730421 - L1MC4 LINE L1 -1339 6703 6635 418 392 76 3 chr5 15355159 15355447 -187730085 - L2 LINE L2 -715 2599 2291 387 269 19 0 chr5 15355618 15355726 -187729806 + MLT1L LTR MaLR 142 251 -364 2170 173 57 40 chr5 15356018 15356474 -187729058 + MLT2C2 LTR ERVL 1 464 0 2229 47 0 106 chr5 15356499 15356838 -187728694 - AluY SINE Alu -8 303 1 34 0 0 0 chr5 15357893 15357927 -187727605 + AT_rich Low_complexity Low_complexity 1 34 0 211 315 98 0 chr5 15358047 15358139 -187727393 - L2 LINE L2 0 3313 3213 908 349 44 14 chr5 15358568 15358935 -187726597 - L2 LINE L2 -2795 519 142 464 297 16 23 chr5 15359134 15359262 -187726270 + MER5A DNA MER1_type 9 135 -54 5263 2 0 0 chr5 15359272 15359854 -187725678 + L1HS LINE L1 5558 6139 -16 318 26 0 0 chr5 15359854 15359893 -187725639 + (TAAAA)n Simple_repeat Simple_repeat 4 42 0 182 138 0 0 chr5 15359923 15359952 -187725580 - MER5B DNA MER1_type -129 49 21 1515 180 21 28 chr5 15361627 15361910 -187723622 - AluJb SINE Alu -31 281 1 26 64 0 0 chr5 15362059 15362106 -187723426 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr5 15362366 15362388 -187723144 + AT_rich Low_complexity Low_complexity 1 22 0 2583 155 9 16 chr5 15362748 15363175 -187722357 + MSTC LTR MaLR 5 428 0 896 317 48 8 chr5 15363986 15364342 -187721190 + LTR16A LTR ERVL 76 445 -5 203 179 0 0 chr5 15365705 15365744 -187719788 + (TA)n Simple_repeat Simple_repeat 2 40 0 262 320 10 0 chr5 15365903 15366003 -187719529 + L1M4 LINE L1 4876 4976 -1170 1507 281 112 20 chr5 15366056 15367159 -187718373 + L1MC4 LINE L1 6097 7406 -636 497 305 81 29 chr5 15367207 15367372 -187718160 + L1MC4 LINE L1 7545 7700 -342 2331 69 0 13 chr5 15367372 15367678 -187717854 + AluY SINE Alu 1 302 -9 497 305 81 29 chr5 15367678 15367856 -187717676 + L1MC4 LINE L1 7700 7906 -136 199 338 0 0 chr5 15369091 15369162 -187716370 + L2 LINE L2 3154 3224 -48 1660 233 81 11 chr5 15369172 15369640 -187715892 + MLT1D LTR MaLR 3 503 -2 511 269 22 0 chr5 15369659 15369793 -187715739 - MLT1D LTR MaLR -82 423 287 269 77 0 0 chr5 15370449 15370488 -187715044 - MLT2A2 LTR ERVL -414 39 1 332 155 0 17 chr5 15370488 15370546 -187714986 - MLT1A1-int LTR MaLR -1310 61 5 1272 184 30 110 chr5 15370553 15370585 -187714947 - MLT1A1 LTR MaLR -4 453 420 2693 7 0 0 chr5 15370585 15370880 -187714652 + AluYa5 SINE Alu 17 311 0 1272 184 30 110 chr5 15370880 15371248 -187714284 - MLT1A1 LTR MaLR -37 420 1 1978 258 21 2 chr5 15371254 15371769 -187713763 - L1ME1 LINE L1 -58 6108 5584 1747 118 20 0 chr5 15371776 15372031 -187713501 + AluSq SINE Alu 1 260 -53 2766 143 5 5 chr5 15372087 15372515 -187713017 + MSTA LTR MaLR 1 428 0 653 194 252 34 chr5 15372528 15372822 -187712710 + LTR37A LTR ERV1 61 418 -8 970 283 77 74 chr5 15372830 15373452 -187712080 - L1ME LINE L1 -5446 624 1 21 71 0 0 chr5 15376841 15376883 -187708649 + AT_rich Low_complexity Low_complexity 1 42 0 41 58 0 0 chr5 15377221 15377290 -187708242 + AT_rich Low_complexity Low_complexity 1 69 0 810 269 60 62 chr5 15378641 15379087 -187706445 + MLT1E LTR MaLR 3 504 -89 929 193 6 11 chr5 15379087 15379263 -187706269 - FAM SINE Alu 0 175 1 810 269 60 62 chr5 15379263 15379353 -187706179 + MLT1E LTR MaLR 504 593 0 197 159 23 0 chr5 15381936 15381980 -187703552 + CT-rich Low_complexity Low_complexity 3 47 0 261 374 106 11 chr5 15382810 15382989 -187702543 + L2 LINE L2 3073 3268 -4 452 222 0 9 chr5 15383131 15383239 -187702293 + FLAM_C SINE Alu 1 107 -36 1863 156 148 8 chr5 15383458 15383829 -187701703 - MSTA LTR MaLR 0 428 6 181 339 142 47 chr5 15384252 15384379 -187701153 - L2 LINE L2 0 3272 3134 2315 81 0 3 chr5 15385413 15385710 -187699822 + AluY SINE Alu 1 296 -15 263 349 37 9 chr5 15385785 15385894 -187699638 + MIR SINE MIR 30 141 -121 27 0 0 0 chr5 15385961 15385988 -187699544 + AT_rich Low_complexity Low_complexity 1 27 0 1501 173 3 48 chr5 15385989 15386140 -187699392 - AluJo SINE Alu -30 282 149 192 97 0 0 chr5 15386140 15386171 -187699361 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1501 173 3 48 chr5 15386171 15386308 -187699224 - AluJo SINE Alu -163 149 7 225 287 43 85 chr5 15386708 15386896 -187698636 + MIR3 SINE MIR 1 180 -28 36 23 0 0 chr5 15387678 15387721 -187697811 + AT_rich Low_complexity Low_complexity 1 43 0 5069 102 7 0 chr5 15387722 15388441 -187697091 - L1PA10 LINE L1 -5 6163 5440 2219 157 14 0 chr5 15388458 15388873 -187696659 + L1P LINE L1 2955 3375 -2771 271 301 124 26 chr5 15389211 15389437 -187696095 + L2 LINE L2 2614 2861 -453 670 298 39 21 chr5 15389535 15389923 -187695609 - L1 LINE L1 -2161 3985 3587 205 86 0 29 chr5 15390084 15390119 -187695413 + (CTTTA)n Simple_repeat Simple_repeat 2 35 0 24 32 0 0 chr5 15390427 15390458 -187695074 + AT_rich Low_complexity Low_complexity 1 31 0 2225 98 0 22 chr5 15390689 15391032 -187694500 - AluSc SINE Alu 0 336 1 376 378 22 16 chr5 15391138 15391323 -187694209 + L2 LINE L2 2829 3014 -299 5410 159 108 8 chr5 15391326 15392373 -187693159 - Tigger1 DNA MER2_type -1266 1152 1 1352 228 94 12 chr5 15394874 15395216 -187690316 - MLT1A2 LTR MaLR -4 370 1 1948 235 65 5 chr5 15395216 15395663 -187689869 - MLT1A2-int LTR MaLR 0 1735 1262 230 344 0 16 chr5 15395659 15395720 -187689812 - MLT1A2-int LTR MaLR -416 1319 1260 * 2233 219 68 3 chr5 15395850 15396487 -187689045 - MLT1A2-int LTR MaLR -482 889 1 685 248 57 1 chr5 15396491 15396796 -187688736 - MLT1A2 LTR MaLR -4 370 7 30445 118 12 56 chr5 15397616 15404039 -187681493 - L1PA7 LINE L1 -8 6146 18 588 331 12 6 chr5 15404041 15404207 -187681325 - LTR16C LTR ERVL -257 234 68 28 0 0 0 chr5 15404719 15404747 -187680785 + AT_rich Low_complexity Low_complexity 1 28 0 1568 132 0 60 chr5 15404796 15405077 -187680455 - L1P LINE L1 -2521 3625 3362 1662 132 16 0 chr5 15405172 15405422 -187680110 - MER47A DNA MER2_type -100 266 13 2516 59 0 0 chr5 15405530 15405836 -187679696 + AluY SINE Alu 1 306 -5 4653 194 25 6 chr5 15406310 15407297 -187678235 + L1 LINE L1 3382 4387 -1759 245 305 12 0 chr5 15407296 15407378 -187678154 + L1PB4 LINE L1 2632 2714 -3432 * 1393 133 4 34 chr5 15407377 15407751 -187677781 + L1MA2 LINE L1 5117 5479 -743 2652 168 21 6 chr5 15407751 15408265 -187677267 + L1MA2 LINE L1 5774 6298 -6 2010 188 22 18 chr5 15408265 15408713 -187676819 + L1PB4 LINE L1 4364 4813 -1333 1873 178 14 6 chr5 15408812 15409160 -187676372 + L1PB4 LINE L1 5432 5782 -374 737 242 6 17 chr5 15409165 15409343 -187676189 + FRAM SINE Alu 1 176 0 282 70 0 53 chr5 15409345 15409402 -187676130 + (GGA)n Simple_repeat Simple_repeat 3 56 0 804 220 12 3 chr5 15409428 15409743 -187675789 + GA-rich Low_complexity Low_complexity 1 317 0 1909 150 48 3 chr5 15409751 15410085 -187675447 + L1PB4 LINE L1 5770 6118 -38 1622 173 29 45 chr5 15410104 15410156 -187675376 + L1MA9 LINE L1 5937 5988 -324 1566 165 210 11 chr5 15410156 15410513 -187675019 + MSTA LTR MaLR 1 428 0 1622 173 29 45 chr5 15410513 15410842 -187674690 + L1MA9 LINE L1 5988 6312 0 21 0 0 0 chr5 15411486 15411507 -187674025 + AT_rich Low_complexity Low_complexity 1 21 0 257 232 107 54 chr5 15412190 15412302 -187673230 - L1MDa LINE L1 -4567 1859 1592 25 65 0 0 chr5 15412697 15412743 -187672789 + AT_rich Low_complexity Low_complexity 1 46 0 2405 130 5 16 chr5 15412788 15413156 -187672376 - THE1B LTR MaLR 0 364 1 657 326 72 14 chr5 15413166 15413608 -187671924 - L1MDa LINE L1 -5219 1197 730 195 42 0 0 chr5 15414767 15414791 -187670741 + (TA)n Simple_repeat Simple_repeat 2 25 0 24 53 0 0 chr5 15415143 15415181 -187670351 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr5 15417479 15417510 -187668022 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr5 15418123 15418148 -187667384 + AT_rich Low_complexity Low_complexity 1 25 0 228 252 237 37 chr5 15418247 15418382 -187667150 + MLT1H LTR MaLR 1 162 -387 354 295 161 51 chr5 15418447 15418664 -187666868 + MLT1H LTR MaLR 309 549 0 28 0 0 0 chr5 15418739 15418767 -187666765 + AT_rich Low_complexity Low_complexity 1 28 0 51 65 0 0 chr5 15418805 15418898 -187666634 + AT_rich Low_complexity Low_complexity 1 93 0 16805 210 18 20 chr5 15418928 15424194 -187661338 - L1PA15 LINE L1 -15 7588 2319 261 348 89 19 chr5 15425197 15425456 -187660076 - L1PA15 LINE L1 -7301 280 4 2861 38 8 16 chr5 15425625 15425991 -187659541 - L1PA6 LINE L1 -5 6149 5787 12042 68 11 0 chr5 15425991 15428089 -187657443 - L1PA6 LINE L1 -298 5856 3734 1538 154 0 8 chr5 15428791 15429044 -187656488 - L1MC1 LINE L1 -14 6319 6069 309 133 0 0 chr5 15429091 15429136 -187656396 - L1MC1 LINE L1 -2171 5637 5593 1540 115 5 9 chr5 15429136 15429381 -187656151 - AluSg/x SINE Alu 0 311 68 13427 138 12 16 chr5 15429381 15431598 -187653934 - L1P LINE L1 -3927 2219 11 22 0 0 0 chr5 15432163 15432185 -187653347 + AT_rich Low_complexity Low_complexity 1 22 0 2056 68 0 0 chr5 15432461 15432726 -187652806 - L1PA10 LINE L1 -287 5881 5617 1718 114 38 0 chr5 15432722 15432984 -187652548 + L1PA10 LINE L1 5877 6148 -20 * 333 0 0 0 chr5 15432987 15433024 -187652508 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 6512 151 43 13 chr5 15433267 15434462 -187651070 - Tigger3b DNA MER2_type 0 1231 1 223 299 15 0 chr5 15435321 15435388 -187650144 + MIR3 SINE MIR 119 186 -22 566 212 68 0 chr5 15436614 15436760 -187648772 - L1MD2 LINE L1 -22 6337 6182 270 81 0 0 chr5 15436768 15436805 -187648727 + (TG)n Simple_repeat Simple_repeat 2 38 0 546 207 0 25 chr5 15436809 15436930 -187648602 - L1MD2 LINE L1 -229 6130 6013 423 308 56 69 chr5 15437066 15437443 -187648089 - LTR16C LTR ERVL -3 488 117 1344 170 156 22 chr5 15437763 15437808 -187647724 - MLT2D LTR ERVL 0 414 376 906 29 36 7 chr5 15437808 15437947 -187647585 + (TAGA)n Simple_repeat Simple_repeat 2 144 0 1344 170 156 22 chr5 15437947 15438266 -187647266 - MLT2D LTR ERVL -38 376 1 1172 216 57 14 chr5 15439170 15439452 -187646080 + MLT1D LTR MaLR 1 294 -211 442 252 162 56 chr5 15439910 15440176 -187645356 + L2 LINE L2 3020 3313 0 279 167 0 0 chr5 15443368 15443434 -187642098 + GA-rich Low_complexity Low_complexity 2 67 0 1001 172 28 189 chr5 15444610 15444964 -187640568 + MLT1A1 LTR MaLR 64 360 -5 337 324 76 25 chr5 15445952 15446319 -187639213 - L1MEc LINE L1 -4564 1832 1447 29 0 0 0 chr5 15446758 15446787 -187638745 + AT_rich Low_complexity Low_complexity 1 29 0 188 83 0 28 chr5 15447161 15447197 -187638335 + (TA)n Simple_repeat Simple_repeat 2 36 0 2192 177 114 0 chr5 15447707 15448147 -187637385 + LTR44 LTR ERV1 26 515 -4 445 227 70 39 chr5 15448974 15449102 -187636430 - MER20 DNA MER1_type -87 132 1 772 143 42 0 chr5 15449408 15449527 -187636005 + MER2 DNA MER2_type 1 124 -221 468 121 30 202 chr5 15449659 15449857 -187635675 + MER2 DNA MER2_type 125 288 -57 716 325 28 0 chr5 15450235 15450487 -187635045 - MIR SINE MIR -3 259 1 1080 183 27 5 chr5 15450849 15451068 -187634464 + MLT1C LTR MaLR 1 224 -243 351 270 98 54 chr5 15553640 15553844 -187531688 - L1MC4 LINE L1 -1 8041 7829 594 211 34 91 chr5 15553886 15554095 -187531437 - L1ME2 LINE L1 -19 6145 5949 408 144 22 44 chr5 15554161 15554251 -187531281 - L1M1 LINE L1 -512 5793 5706 286 114 0 0 chr5 15554246 15554290 -187531242 + L1M2 LINE L1 5787 5830 -482 * 817 362 111 21 chr5 15554292 15555106 -187530426 + L2 LINE L2 2075 2961 -353 2186 117 3 7 chr5 15555265 15555572 -187529960 + AluSx SINE Alu 1 306 -6 360 269 19 10 chr5 15555609 15555713 -187529819 + MLT1J LTR MaLR 119 223 -288 300 200 0 0 chr5 15555809 15555879 -187529653 + (CA)n Simple_repeat Simple_repeat 2 71 0 287 339 79 18 chr5 15555992 15556157 -187529375 + L2 LINE L2 3139 3313 0 228 341 23 0 chr5 15556258 15556346 -187529186 - MER5B DNA MER1_type -82 96 7 339 96 0 0 chr5 15557014 15557066 -187528466 + (TA)n Simple_repeat Simple_repeat 1 52 0 385 168 30 30 chr5 15558032 15558133 -187527399 - MER53 DNA DNA -88 101 1 411 208 0 0 chr5 15558252 15558324 -187527208 + LTR16B LTR ERVL 393 464 0 351 271 98 20 chr5 15559042 15559294 -187526238 + L1ME1 LINE L1 5914 6141 -25 185 0 40 0 chr5 15559663 15559688 -187525844 + (CAAAAA)n Simple_repeat Simple_repeat 5 30 0 336 303 70 13 chr5 15559948 15560149 -187525383 + L1MEc LINE L1 1010 1196 -5009 4617 68 45 0 chr5 15560149 15560750 -187524782 + MER11D LTR ERVK 270 897 0 7842 207 24 19 chr5 15560750 15563301 -187522231 - L1MA6 LINE L1 -328 5972 3338 574 200 9 0 chr5 15563302 15563407 -187522125 - U6 snRNA snRNA 0 107 2 342 306 110 23 chr5 15563416 15563635 -187521897 + L1MEc LINE L1 1220 1457 -4758 236 316 32 0 chr5 15563661 15563756 -187521776 + L1MC4 LINE L1 7573 7670 -372 1575 294 37 55 chr5 15564785 15565405 -187520127 + L1MA5 LINE L1 1 609 -6600 11889 236 35 36 chr5 15565756 15567375 -187518157 + L1MA5 LINE L1 1762 3381 -3827 1704 163 176 6 chr5 15567375 15567738 -187517794 + MSTA LTR MaLR 1 425 -3 11889 236 35 36 chr5 15567738 15568646 -187516886 + L1MA5 LINE L1 3381 4288 -2920 2160 176 31 12 chr5 15568646 15569066 -187516466 - MSTA LTR MaLR 0 428 1 11889 236 35 36 chr5 15569066 15571190 -187514342 + L1MA5 LINE L1 4288 6415 -793 836 88 64 0 chr5 15571190 15571315 -187514217 + MER85 DNA T2_type 1 133 -6 4905 163 30 4 chr5 15571316 15572239 -187513293 + L1MA5 LINE L1 6414 7360 -2 2492 253 40 12 chr5 15573052 15573772 -187511760 - L1ME1 LINE L1 -44 6122 5383 288 111 0 0 chr5 15573863 15573908 -187511624 + (GAAAA)n Simple_repeat Simple_repeat 2 46 0 1288 175 13 4 chr5 15574004 15574233 -187511299 + AluJb SINE Alu 82 312 0 450 324 92 33 chr5 15574435 15574770 -187510762 + L1M4 LINE L1 3392 3769 -2377 679 127 40 33 chr5 15574770 15574920 -187510612 + L1MA9 LINE L1 6162 6312 0 450 324 92 33 chr5 15574920 15575093 -187510439 + L1M4 LINE L1 3769 3930 -2216 763 234 139 50 chr5 15575237 15575284 -187510248 + LTR37B LTR ERV1 10 51 -417 1812 157 149 11 chr5 15575284 15575660 -187509872 - MSTA LTR MaLR 0 428 1 763 234 139 50 chr5 15575660 15575898 -187509634 + LTR37B LTR ERV1 51 346 -122 189 0 0 0 chr5 15575898 15575919 -187509613 + (TA)n Simple_repeat Simple_repeat 1 21 0 763 234 139 50 chr5 15575919 15576050 -187509482 + LTR37B LTR ERV1 346 464 -4 24 32 0 0 chr5 15576165 15576196 -187509336 + AT_rich Low_complexity Low_complexity 1 31 0 416 226 59 58 chr5 15577047 15577273 -187508259 + MER5C DNA MER1_type 6 321 -3 1828 206 72 28 chr5 15579164 15579624 -187505908 - L1MB7 LINE L1 0 6184 5705 1616 175 22 3 chr5 15579624 15579938 -187505594 + L1MB1 LINE L1 5848 6167 -1 243 0 0 0 chr5 15580004 15580031 -187505501 + (T)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr5 15580266 15580293 -187505239 + AT_rich Low_complexity Low_complexity 1 27 0 26 30 0 0 chr5 15581751 15581784 -187503748 + AT_rich Low_complexity Low_complexity 1 33 0 212 402 0 0 chr5 15582155 15582237 -187503295 + MIR SINE MIR 32 113 -149 324 307 150 38 chr5 15582812 15583105 -187502427 + L2 LINE L2 2827 3152 -161 288 307 59 10 chr5 15583132 15583233 -187502299 - MIR SINE MIR -125 137 32 244 349 148 10 chr5 15583499 15583708 -187501824 + MIR SINE MIR 18 255 -7 596 187 2 15 chr5 15583753 15583888 -187501644 - L1MD3 LINE L1 -1 7980 7666 510 250 78 31 chr5 15583877 15584069 -187501463 - L1MC4 LINE L1 -1226 6816 6616 * 23 33 0 0 chr5 15584191 15584221 -187501311 + AT_rich Low_complexity Low_complexity 1 30 0 3604 146 74 9 chr5 15584303 15584993 -187500539 + L1MA6 LINE L1 5564 6298 -2 1551 167 6 77 chr5 15585039 15585362 -187500170 - AluJo SINE Alu -12 300 1 4134 98 48 32 chr5 15585515 15586168 -187499364 - L1PA13 LINE L1 -4 6159 5497 4090 226 50 2 chr5 15586168 15586970 -187498562 - L1PA13 LINE L1 -5923 864 25 1745 162 66 41 chr5 15587089 15587453 -187498079 + Tigger2 DNA MER2_type 2334 2706 -12 3528 257 90 12 chr5 15587636 15589125 -187496407 + L1M4b LINE L1 1098 2693 -4874 435 258 0 0 chr5 15589128 15589221 -187496311 + MLT1A2 LTR MaLR 1 93 -281 225 182 0 0 chr5 15589232 15589265 -187496267 + MLT1A2 LTR MaLR 237 269 -96 231 94 0 0 chr5 15589292 15589324 -187496208 + LTR9 LTR ERV1 581 612 0 316 175 111 0 chr5 15589373 15589436 -187496096 + MLT1A2 LTR MaLR 293 362 -12 1401 244 40 93 chr5 15589475 15590118 -187495414 + LTR9 LTR ERV1 4 612 0 425 290 6 12 chr5 15590187 15590349 -187495183 + L1M4b LINE L1 2850 3010 -4555 2222 154 21 14 chr5 15590584 15591005 -187494527 + L1MA3 LINE L1 5882 6305 0 325 254 55 26 chr5 15591101 15591389 -187494143 + L1M4b LINE L1 3364 3625 -3942 374 284 69 0 chr5 15591420 15591536 -187493996 + L1M4b LINE L1 4567 4690 -2875 702 217 60 9 chr5 15591547 15591764 -187493768 + L1MB8 LINE L1 3657 3884 -3681 * 2038 250 28 17 chr5 15591762 15592507 -187493025 + L1MB8 LINE L1 4531 5283 -2282 1561 181 19 161 chr5 15592508 15592949 -187492583 + LTR60 LTR ERV1 1 340 -246 2091 164 22 11 chr5 15592949 15593320 -187492212 - THE1C LTR MaLR 0 375 1 1561 181 19 161 chr5 15593320 15593462 -187492070 + LTR60 LTR ERV1 340 501 -85 855 175 86 129 chr5 15593341 15593667 -187491865 + TAR1 Satellite telomeric 2 313 -1798 * 3937 212 54 73 chr5 15593667 15593801 -187491731 + L1MB8 LINE L1 5282 5417 -2186 2244 124 48 20 chr5 15593801 15594155 -187491377 + THE1B LTR MaLR 1 364 0 3937 212 54 73 chr5 15594155 15594267 -187491265 + L1MB8 LINE L1 5417 5530 -2073 3124 92 0 22 chr5 15594267 15594724 -187490808 - L1PA7 LINE L1 -5 6149 5703 3937 212 54 73 chr5 15594724 15595453 -187490079 + L1MB8 LINE L1 5530 6271 -1332 2254 74 0 3 chr5 15595453 15595759 -187489773 + AluY SINE Alu 2 306 0 3937 212 54 73 chr5 15595759 15595975 -187489557 + L1MB8 LINE L1 6271 6490 -1113 3828 111 45 2 chr5 15595975 15596552 -187488980 - LTR43 LTR ERV1 0 602 1 3937 212 54 73 chr5 15596552 15596846 -187488686 + L1MB8 LINE L1 6490 6788 -815 4368 110 16 6 chr5 15596846 15597484 -187488048 + LTR9B LTR ERV1 1 644 0 3937 212 54 73 chr5 15597484 15597945 -187487587 + L1MB8 LINE L1 6788 7206 -397 2240 145 78 15 chr5 15597947 15598150 -187487382 + LTR59 LTR ERV1 1 190 -407 4475 135 54 4 chr5 15598150 15598892 -187486640 - MER4E LTR ERV1 0 779 1 2240 145 78 15 chr5 15598892 15599096 -187486436 + LTR59 LTR ERV1 190 434 -163 6222 146 1 24 chr5 15599114 15599500 -187486032 - L1PB1 LINE L1 -2 6149 5756 234 0 0 0 chr5 15599500 15599526 -187486006 + (GA)n Simple_repeat Simple_repeat 2 27 0 6222 146 1 24 chr5 15599526 15600525 -187485007 - L1PB1 LINE L1 -395 5756 4800 2170 120 0 0 chr5 15600525 15600825 -187484707 - AluSg SINE Alu -10 300 1 6222 146 1 24 chr5 15600825 15600929 -187484603 - L1PB1 LINE L1 -1351 4800 4695 891 179 0 35 chr5 15600929 15601102 -187484430 + LTR59 LTR ERV1 426 592 -5 1228 223 67 32 chr5 15601105 15601478 -187484054 + L1MB8 LINE L1 7211 7596 -1 190 209 70 116 chr5 15602031 15602117 -187483415 - MIR SINE MIR -116 146 65 279 349 83 18 chr5 15603889 15604118 -187481414 - LTR16A1 LTR ERVL 0 457 214 353 259 143 19 chr5 15604315 15604493 -187481039 - MLT1H1 LTR MaLR -305 250 73 622 333 15 26 chr5 15604574 15604838 -187480694 - HERVL40 LTR ERVL -4017 1513 1253 1264 297 59 34 chr5 15604911 15605416 -187480116 - HERVL40 LTR ERVL -4415 1115 598 2289 85 0 19 chr5 15605444 15605762 -187479770 - AluSx SINE Alu 0 312 1 923 227 82 32 chr5 15605942 15606277 -187479255 + MSTD LTR MaLR 8 396 0 608 275 22 17 chr5 15606313 15606491 -187479041 - MLT1J2 LTR MaLR -251 199 21 21 0 0 0 chr5 15607566 15607587 -187477945 + AT_rich Low_complexity Low_complexity 1 21 0 2360 67 0 0 chr5 15607674 15607983 -187477549 - AluSg SINE Alu 0 309 1 27 29 0 0 chr5 15608597 15608631 -187476901 + AT_rich Low_complexity Low_complexity 1 34 0 27 73 0 0 chr5 15609206 15609261 -187476271 + AT_rich Low_complexity Low_complexity 1 55 0 2237 112 0 0 chr5 15611399 15611695 -187473837 - AluSg SINE Alu -14 296 1 1684 171 61 25 chr5 15612188 15612550 -187472982 + THE1C LTR MaLR 1 375 0 9643 138 7 33 chr5 15612553 15614139 -187471393 + THE1C-int LTR MaLR 4 1547 -33 2021 102 3 31 chr5 15614402 15614696 -187470836 - AluSp SINE Alu -8 305 20 1390 198 7 4 chr5 15614977 15615250 -187470282 - AluJo SINE Alu -14 298 25 35 41 0 0 chr5 15615622 15615671 -187469861 + AT_rich Low_complexity Low_complexity 1 49 0 2570 48 0 7 chr5 15617113 15617423 -187468109 - AluY SINE Alu 0 311 4 398 281 72 60 chr5 15617424 15617659 -187467873 - L1MDb LINE L1 -5082 1862 1625 271 300 0 0 chr5 15618143 15618213 -187467319 + (TG)n Simple_repeat Simple_repeat 2 71 0 6617 149 19 33 chr5 15618402 15619273 -187466259 - Tigger3b DNA MER2_type -1833 1195 344 2081 123 3 10 chr5 15619273 15619574 -187465958 - AluSx SINE Alu -9 303 5 6617 149 19 33 chr5 15619574 15619913 -187465619 - Tigger3b DNA MER2_type -2684 344 2 2317 53 0 7 chr5 15620276 15620559 -187464973 + AluY SINE Alu 3 283 -28 21 36 0 0 chr5 15621448 15621476 -187464056 + AT_rich Low_complexity Low_complexity 1 28 0 402 313 53 60 chr5 15621886 15621913 -187463619 + L2 LINE L2 1205 1231 -2083 2050 124 59 34 chr5 15621913 15622268 -187463264 - THE1B LTR MaLR 0 364 1 402 313 53 60 chr5 15622268 15622540 -187462992 + L2 LINE L2 1231 1502 -1812 562 217 39 34 chr5 15622541 15622720 -187462812 + MER33 DNA MER1_type 1 166 -93 1023 166 5 0 chr5 15622721 15622908 -187462624 + L1M2 LINE L1 2499 2686 -4163 515 204 34 54 chr5 15622908 15623055 -187462477 + MER33 DNA MER1_type 216 359 -4 2486 315 75 51 chr5 15623065 15624571 -187460961 + L2 LINE L2 1515 3054 -259 204 40 0 0 chr5 15625093 15625118 -187460414 + (A)n Simple_repeat Simple_repeat 1 25 0 210 71 0 0 chr5 15625176 15625204 -187460328 + (TTA)n Simple_repeat Simple_repeat 2 29 0 809 200 7 7 chr5 15625206 15625351 -187460181 - FRAM SINE Alu -30 146 2 22 35 0 0 chr5 15626824 15626853 -187458679 + AT_rich Low_complexity Low_complexity 1 29 0 1108 251 101 79 chr5 15627542 15627831 -187457701 - L1MDb LINE L1 -5017 1406 1125 2243 82 0 16 chr5 15627831 15628147 -187457385 - AluY SINE Alu 0 311 1 1108 251 101 79 chr5 15628147 15628463 -187457069 - L1MDb LINE L1 -5298 1125 788 24 0 0 0 chr5 15630154 15630178 -187455354 + AT_rich Low_complexity Low_complexity 1 24 0 922 186 16 5 chr5 15631682 15631870 -187453662 - Tigger4(Zombi) DNA MER2_type -2 2729 2540 * 1440 159 44 30 chr5 15631858 15632128 -187453404 - MER7A DNA MER2_type -64 282 11 679 343 56 75 chr5 15632346 15633055 -187452477 - L1MEd LINE L1 -5032 1087 392 409 106 0 15 chr5 15633732 15633798 -187451734 + L1PB4 LINE L1 6080 6144 -12 1140 232 89 35 chr5 15634103 15634473 -187451059 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr5 15635812 15635834 -187449698 + AT_rich Low_complexity Low_complexity 1 22 0 450 79 0 0 chr5 15636071 15636134 -187449398 + (TG)n Simple_repeat Simple_repeat 1 63 0 326 320 10 0 chr5 15637507 15637610 -187447922 + GA-rich Low_complexity Low_complexity 2 105 0 201 348 82 27 chr5 15637641 15637825 -187447707 + MIR SINE MIR 22 215 -47 1049 220 102 34 chr5 15637906 15638201 -187447331 - MLT1A1 LTR MaLR 0 365 51 27 81 0 0 chr5 15638271 15638333 -187447199 + AT_rich Low_complexity Low_complexity 1 62 0 289 313 0 24 chr5 15639002 15639085 -187446447 - L1MEd LINE L1 -5467 652 572 284 258 30 91 chr5 15639773 15639905 -187445627 - L2 LINE L2 -1 3271 3148 210 344 43 74 chr5 15639964 15640000 -187445532 - MIR3 SINE MIR -18 190 154 2116 91 0 0 chr5 15640000 15640287 -187445245 + L1PA5 LINE L1 5867 6153 -1 210 344 43 74 chr5 15640287 15640413 -187445119 - MIR3 SINE MIR -54 154 33 34 0 0 0 chr5 15640566 15640600 -187444932 + AT_rich Low_complexity Low_complexity 1 34 0 474 293 223 4 chr5 15642986 15643259 -187442273 - MLT1H LTR MaLR -16 533 201 736 346 74 0 chr5 15643314 15643623 -187441909 - MLT2E LTR ERVL -258 370 39 275 289 91 3 chr5 15643721 15643867 -187441665 - L1ME2 LINE L1 -49 6113 5967 1622 271 89 14 chr5 15643895 15644815 -187440717 - L1MD2 LINE L1 -462 5897 4899 4020 161 1 1 chr5 15644900 15645571 -187439961 - L1PA15 LINE L1 -3 7600 6930 10042 218 49 14 chr5 15645594 15647683 -187437849 - L1PA15 LINE L1 -913 6671 4473 1180 116 83 0 chr5 15647683 15647864 -187437668 + MER107 DNA MER1_type 1 196 -1 10042 218 49 14 chr5 15647864 15648344 -187437188 - L1PA15 LINE L1 -3111 4473 4011 4632 235 31 10 chr5 15648345 15650119 -187435413 - L1PA15 LINE L1 -3749 3835 2022 456 326 39 26 chr5 15651456 15651766 -187433766 - L1PA15 LINE L1 -7261 320 7 1623 264 129 38 chr5 15651787 15653176 -187432356 - L1MCb LINE L1 -4491 2073 570 649 282 116 70 chr5 15653381 15653796 -187431736 - L1MCb LINE L1 -5673 372 65 24 32 0 0 chr5 15653818 15653849 -187431683 + AT_rich Low_complexity Low_complexity 1 31 0 2139 119 0 0 chr5 15654032 15654335 -187431197 - AluY SINE Alu -8 303 1 1774 203 48 8 chr5 15655074 15655449 -187430083 + MLT1B LTR MaLR 1 390 0 190 325 60 0 chr5 15655941 15656024 -187429508 - L2 LINE L2 0 3313 3226 511 325 69 12 chr5 15656659 15656979 -187428553 - MER46C DNA MER2_type 0 338 1 549 311 98 36 chr5 15657114 15657963 -187427569 - HAL1 LINE L1 -732 1775 875 251 362 54 33 chr5 15658296 15658572 -187426960 - HERV16 LTR ERVL -4006 990 709 249 213 16 0 chr5 15658773 15658834 -187426698 - MLT1E3 LTR MaLR 0 624 563 2059 255 74 12 chr5 15658844 15659409 -187426123 - MLT1E3 LTR MaLR -24 600 1 608 211 164 18 chr5 15659549 15659842 -187425690 + MLT1C LTR MaLR 6 352 -38 1240 239 4 0 chr5 15660234 15660502 -187425030 - MLT2D LTR ERVL -141 273 5 2193 104 0 7 chr5 15660506 15660815 -187424717 + AluSc SINE Alu 1 307 -2 240 250 47 0 chr5 15661045 15661109 -187424423 - MIR3 SINE MIR -19 189 123 25 105 0 0 chr5 15661611 15661706 -187423826 + AT_rich Low_complexity Low_complexity 1 95 0 2332 97 0 3 chr5 15661784 15662095 -187423437 - AluSg SINE Alu 0 310 1 22 56 0 0 chr5 15662281 15662317 -187423215 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr5 15662397 15662426 -187423106 + AT_rich Low_complexity Low_complexity 1 29 0 1699 259 111 8 chr5 15662785 15662806 -187422726 + L1MD2 LINE L1 3796 3813 -2333 5005 52 0 0 chr5 15662806 15663421 -187422111 + L1PA5 LINE L1 5534 6148 -6 1699 259 111 8 chr5 15663421 15664021 -187421511 + L1MD2 LINE L1 3813 4481 -1665 2658 267 98 16 chr5 15664097 15664859 -187420673 + L1MD2 LINE L1 4641 5339 -1020 213 39 0 0 chr5 15664859 15664885 -187420647 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 2658 267 98 16 chr5 15664885 15665703 -187419829 + L1MD2 LINE L1 5339 6348 -11 2180 190 13 43 chr5 15665871 15666093 -187419439 + MER74C LTR ERVL 11 213 -247 1865 181 39 31 chr5 15666093 15666480 -187419052 + MLT1B LTR MaLR 1 390 0 2180 190 13 43 chr5 15666480 15666721 -187418811 + MER74C LTR ERVL 213 460 0 293 266 58 22 chr5 15666741 15666880 -187418652 + L1MDa LINE L1 2311 2454 -4086 909 276 121 29 chr5 15666936 15667564 -187417968 + L1MDa LINE L1 2607 3292 -3248 1526 224 94 4 chr5 15667584 15668222 -187417310 - L1MCa LINE L1 -3947 2479 1867 375 183 149 10 chr5 15668225 15668402 -187417130 - MER67D LTR ERV1 0 514 236 1512 239 66 20 chr5 15668403 15668902 -187416630 - L1MCa LINE L1 -4756 1670 1149 246 207 17 0 chr5 15668907 15668965 -187416567 + L1ME2 LINE L1 6079 6137 -27 1412 176 3 76 chr5 15668983 15669272 -187416260 + AluJb SINE Alu 1 268 -44 1544 103 5 5 chr5 15669272 15669486 -187416046 + AluSg/x SINE Alu 93 306 -4 14732 176 25 17 chr5 15671624 15673658 -187411874 - L1MA2 LINE L1 0 7723 5707 2087 118 0 16 chr5 15673658 15673964 -187411568 - AluSx SINE Alu -11 301 1 14732 176 25 17 chr5 15673964 15674983 -187410549 - L1MA2 LINE L1 -2016 5707 4698 2275 88 6 31 chr5 15674983 15675302 -187410230 - AluY SINE Alu 0 311 1 14732 176 25 17 chr5 15675302 15679906 -187405626 - L1MA2 LINE L1 -3025 4698 16 1571 270 56 51 chr5 15680124 15680746 -187404786 + MLT1E2 LTR MaLR 2 626 0 368 262 94 78 chr5 15680808 15680999 -187404533 - MIR SINE MIR -14 248 55 481 271 68 50 chr5 15681004 15681443 -187404089 - Charlie2a DNA MER1_type -486 2376 1930 337 211 61 9 chr5 15681490 15681604 -187403928 - Charlie2a DNA MER1_type -1236 1626 1507 452 349 68 24 chr5 15682514 15682763 -187402769 - MIR SINE MIR 0 262 3 1139 195 46 4 chr5 15683722 15683963 -187401569 + L1PA16 LINE L1 5913 6163 -3 26 64 0 0 chr5 15684012 15684059 -187401473 + AT_rich Low_complexity Low_complexity 1 47 0 1437 301 86 32 chr5 15684175 15684932 -187400600 + L2 LINE L2 20 817 -2497 690 294 84 4 chr5 15684935 15685197 -187400335 + L2 LINE L2 1413 1695 -1619 1049 222 77 14 chr5 15685742 15686039 -187399493 + L1ME1 LINE L1 5847 6162 -4 37 99 0 0 chr5 15686200 15686321 -187399211 + AT_rich Low_complexity Low_complexity 1 121 0 1691 174 65 11 chr5 15686438 15686794 -187398738 + THE1C LTR MaLR 1 375 0 9245 138 12 39 chr5 15686796 15688417 -187397115 + THE1C-int LTR MaLR 3 1580 0 1598 182 78 28 chr5 15688417 15688774 -187396758 + THE1C LTR MaLR 1 375 0 3886 247 43 22 chr5 15688781 15690143 -187395389 + L1M4 LINE L1 3906 5296 -850 630 234 22 0 chr5 15690125 15690309 -187395223 + L1MA7 LINE L1 6104 6291 0 * 293 176 0 0 chr5 15690356 15690407 -187395125 + L1MD3 LINE L1 7749 7799 -196 * 1183 204 40 30 chr5 15690401 15690430 -187395102 + L1MC2 LINE L1 6013 6040 -304 805 241 172 30 chr5 15690430 15690836 -187394696 + MER31B LTR ERV1 3 466 0 1183 204 40 30 chr5 15690836 15691110 -187394422 + L1MC2 LINE L1 6040 6319 -25 366 341 139 8 chr5 15691191 15691443 -187394089 - L2 LINE L2 -1004 2310 2026 335 103 21 98 chr5 15691679 15691873 -187393659 + (TA)n Simple_repeat Simple_repeat 2 180 0 639 87 0 77 chr5 15691920 15692115 -187393417 + (TA)n Simple_repeat Simple_repeat 1 180 0 654 75 0 80 chr5 15692155 15692342 -187393190 + (TA)n Simple_repeat Simple_repeat 1 172 0 726 72 0 77 chr5 15692358 15692553 -187392979 + (TA)n Simple_repeat Simple_repeat 1 180 0 1886 147 4 0 chr5 15692557 15692836 -187392696 - AluSx SINE Alu -32 280 1 241 319 35 26 chr5 15692847 15692963 -187392569 + MER89 LTR ERV1 405 521 -38 1283 244 90 17 chr5 15694150 15694617 -187390915 - MLT1D LTR MaLR 0 505 5 23 0 0 0 chr5 15694774 15694797 -187390735 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr5 15695586 15695616 -187389916 + AT_rich Low_complexity Low_complexity 1 30 0 413 276 0 0 chr5 15696546 15696644 -187388888 - MER5A DNA MER1_type -81 108 11 23 33 0 0 chr5 15696777 15696807 -187388725 + AT_rich Low_complexity Low_complexity 1 30 0 545 281 79 0 chr5 15697462 15697626 -187387906 + MIR SINE MIR 78 254 -8 1648 172 75 26 chr5 15697626 15697974 -187387558 - MLT1A1 LTR MaLR 0 365 1 646 249 150 43 chr5 15698147 15698400 -187387132 - MER110 LTR ERV1 -6 485 206 293 67 0 22 chr5 15699084 15699129 -187386403 + (TTCCC)n Simple_repeat Simple_repeat 5 48 0 326 195 22 28 chr5 15699137 15699317 -187386215 + CT-rich Low_complexity Low_complexity 1 179 0 307 60 40 0 chr5 15699315 15699365 -187386167 + (TCC)n Simple_repeat Simple_repeat 3 54 0 * 186 226 11 32 chr5 15700187 15700280 -187385252 + GA-rich Low_complexity Low_complexity 2 92 0 246 132 85 19 chr5 15700586 15700692 -187384840 + (TA)n Simple_repeat Simple_repeat 2 114 0 1387 141 60 56 chr5 15700703 15700987 -187384545 - THE1B LTR MaLR 0 364 80 620 51 26 0 chr5 15701129 15701207 -187384325 - THE1B LTR MaLR -284 80 1 340 208 0 62 chr5 15701259 15701355 -187384177 - L1MC4 LINE L1 -1339 6703 6614 48 32 0 0 chr5 15701531 15701593 -187383939 + AT_rich Low_complexity Low_complexity 1 62 0 863 181 80 43 chr5 15701959 15702147 -187383385 - MER20 DNA MER1_type -24 195 1 25 0 0 0 chr5 15702377 15702402 -187383130 + AT_rich Low_complexity Low_complexity 1 25 0 504 278 50 6 chr5 15703082 15703262 -187382270 + MER5A DNA MER1_type 2 189 0 375 23 0 0 chr5 15704162 15704206 -187381326 + (TG)n Simple_repeat Simple_repeat 2 45 0 2291 57 0 17 chr5 15705049 15705348 -187380184 - AluY SINE Alu -17 294 1 251 319 48 32 chr5 15705720 15705908 -187379624 - MARNA DNA Mariner -15 571 381 29 28 0 0 chr5 15705911 15705947 -187379585 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr5 15706043 15706064 -187379468 + AT_rich Low_complexity Low_complexity 1 21 0 269 109 22 0 chr5 15706107 15706153 -187379379 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 34 24 0 0 chr5 15706185 15706226 -187379306 + AT_rich Low_complexity Low_complexity 1 41 0 1672 147 3 20 chr5 15706483 15706789 -187378743 - AluJo SINE Alu -8 304 4 293 280 0 0 chr5 15707382 15707475 -187378057 + GA-rich Low_complexity Low_complexity 2 94 0 396 0 0 0 chr5 15708763 15708807 -187376725 + (CA)n Simple_repeat Simple_repeat 2 45 0 200 289 0 0 chr5 15708819 15708871 -187376661 + GA-rich Low_complexity Low_complexity 2 53 0 1340 222 40 0 chr5 15708872 15709196 -187376336 - MLT2C2 LTR ERVL -61 336 1 747 313 85 42 chr5 15709199 15709944 -187375588 + L2 LINE L2 2424 3192 -121 29 47 0 0 chr5 15710346 15710389 -187375143 + AT_rich Low_complexity Low_complexity 1 43 0 501 311 8 56 chr5 15710550 15710801 -187374731 + L1MDa LINE L1 102 340 -6200 1653 254 89 24 chr5 15711003 15711990 -187373542 + L1MDa LINE L1 990 5739 -801 1765 239 91 6 chr5 15712051 15712577 -187372955 + L1M2c LINE L1 1387 1957 -4832 654 224 39 54 chr5 15712584 15712843 -187372689 - MER69 DNA AcHobo -91 2435 2181 5182 158 2 36 chr5 15712856 15713874 -187371658 - L1PA15 LINE L1 -2 6163 5180 771 152 0 33 chr5 15714170 15714321 -187371211 + L1MA4 LINE L1 6151 6296 -4 29 28 0 0 chr5 15714368 15714404 -187371128 + AT_rich Low_complexity Low_complexity 1 36 0 7007 51 12 0 chr5 15715501 15717201 -187368331 + L1PA7 LINE L1 4437 6146 -8 1797 187 14 36 chr5 15717646 15718066 -187367466 + MLT1B LTR MaLR 1 390 0 3343 11 0 0 chr5 15718525 15718906 -187366626 - L1HS LINE L1 -1 6154 5774 16219 23 0 0 chr5 15718906 15720834 -187364698 + L1P LINE L1 2419 4346 -1800 2109 72 4 0 chr5 15721855 15722119 -187363413 - AluSq SINE Alu -26 287 23 221 224 35 47 chr5 15723086 15723171 -187362361 + GA-rich Low_complexity Low_complexity 2 85 0 791 355 61 28 chr5 15723285 15723778 -187361754 + LTR33 LTR ERVL 6 514 -7 23 0 0 0 chr5 15724575 15724598 -187360934 + AT_rich Low_complexity Low_complexity 1 23 0 491 254 66 75 chr5 15724772 15724985 -187360547 - MLT1H LTR MaLR -338 211 1 483 291 71 11 chr5 15725495 15725677 -187359855 - MLT1E1 LTR MaLR -83 571 379 399 258 210 0 chr5 15725759 15725926 -187359606 - MLT1E1 LTR MaLR -420 204 3 4406 89 8 2 chr5 15726576 15727184 -187358348 + LTR10E LTR ERV1 1 612 -21 1089 354 70 23 chr5 15727309 15728845 -187356687 + HERVL LTR ERVL 2061 3628 -2026 480 276 76 30 chr5 15729340 15729604 -187355928 + L1ME3 LINE L1 5650 5925 -237 2796 131 9 9 chr5 15729389 15729847 -187355685 + L1PA16 LINE L1 5709 6166 0 396 364 96 29 chr5 15731030 15731373 -187354159 + L2 LINE L2 2942 3307 -6 21 0 0 0 chr5 15732018 15732039 -187353493 + AT_rich Low_complexity Low_complexity 1 21 0 342 67 0 0 chr5 15732696 15732741 -187352791 + (TG)n Simple_repeat Simple_repeat 1 45 0 282 95 0 0 chr5 15732743 15732785 -187352747 + (GA)n Simple_repeat Simple_repeat 2 43 0 17896 200 16 12 chr5 15732946 15739652 -187345880 + L1PA13 LINE L1 1 6746 -68 1003 215 45 4 chr5 15739639 15739885 -187345647 + L1M4 LINE L1 3514 3769 -2377 * 340 222 20 0 chr5 15739891 15739990 -187345542 + L1M4 LINE L1 4949 5049 -1097 2475 198 50 9 chr5 15741436 15741971 -187343561 - MER89 LTR ERV1 -2 557 1 617 347 125 15 chr5 15742011 15742420 -187343112 + L2 LINE L2 2812 3265 -48 487 289 65 18 chr5 15743203 15743542 -187341990 + L1MC/D LINE L1 3105 3459 -2687 391 279 58 0 chr5 15743607 15743779 -187341753 + L1MC/D LINE L1 3592 3773 -2373 1357 250 82 52 chr5 15743871 15744683 -187340849 + L1MC/D LINE L1 4229 5065 -1081 411 21 0 0 chr5 15744834 15744882 -187340650 + (TG)n Simple_repeat Simple_repeat 2 49 0 322 256 11 0 chr5 15744889 15744979 -187340553 + L1ME1 LINE L1 6070 6160 -6 230 346 8 8 chr5 15744986 15745113 -187340419 + L1MEc LINE L1 1624 1750 -4646 308 77 19 0 chr5 15745352 15745404 -187340128 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 1848 137 0 45 chr5 15745406 15745698 -187339834 - AluSx SINE Alu -33 279 1 505 304 60 54 chr5 15745727 15746319 -187339213 + L1MEc LINE L1 2047 2676 -3539 269 209 12 23 chr5 15746374 15746460 -187339072 + L1MC/D LINE L1 5265 5349 -797 487 322 51 30 chr5 15746516 15746811 -187338721 + L1MC/D LINE L1 5462 5762 -2046 337 239 31 8 chr5 15746811 15746941 -187338591 + (TA)n Simple_repeat Simple_repeat 1 133 0 248 299 72 66 chr5 15748197 15748364 -187337168 + L2 LINE L2 2797 2964 -350 342 67 0 0 chr5 15748551 15748596 -187336936 + (TG)n Simple_repeat Simple_repeat 2 46 0 207 268 127 0 chr5 15748597 15748668 -187336864 + L2 LINE L2 3193 3272 0 2669 184 39 35 chr5 15749590 15750182 -187335350 + L1MB1 LINE L1 5547 6140 -49 1739 210 71 5 chr5 15750186 15750385 -187335147 - MSTB LTR MaLR -4 422 237 270 0 0 0 chr5 15750385 15750415 -187335117 + (GA)n Simple_repeat Simple_repeat 1 30 0 1739 210 71 5 chr5 15750415 15750611 -187334921 - MSTB LTR MaLR -189 237 1 4191 179 35 5 chr5 15750611 15751372 -187334160 - MSTB-int LTR MaLR 0 1651 868 1754 159 159 5 chr5 15751481 15751851 -187333681 + MSTA LTR MaLR 1 427 -1 612 116 54 0 chr5 15751855 15751967 -187333565 - L1MA7 LINE L1 -2 6289 6172 2380 67 0 0 chr5 15752453 15752770 -187332762 - AluY SINE Alu 0 317 1 206 259 7 140 chr5 15753375 15753518 -187332014 + L2 LINE L2 3186 3309 -4 951 322 98 33 chr5 15753663 15754232 -187331300 + L1MA6 LINE L1 89 694 -6155 715 321 4 2 chr5 15754470 15754688 -187330844 + L1MA6 LINE L1 1335 1565 -5284 * 3764 235 99 6 chr5 15754685 15755965 -187329567 + L1MA6 LINE L1 2799 4202 -2646 760 73 0 18 chr5 15755969 15756078 -187329454 + LTR7 LTR ERV1 342 448 -2 15538 104 52 12 chr5 15756080 15758919 -187326613 + HERVH LTR ERV1 1 2995 -4718 944 140 7 0 chr5 15758898 15759048 -187326484 + HERVH LTR ERV1 3140 3290 -4423 * 1053 142 0 6 chr5 15759038 15759200 -187326332 + HERVH LTR ERV1 3492 3652 -4061 * 4607 62 5 8 chr5 15759192 15759802 -187325730 + HERVH LTR ERV1 7106 7713 0 1587 127 65 113 chr5 15759802 15760235 -187325297 + LTR7 LTR ERV1 1 412 -38 4611 205 69 52 chr5 15760276 15761084 -187324448 + L1MA6 LINE L1 4212 5005 -2015 1214 123 5 5 chr5 15761084 15761288 -187324244 - L1MA2 LINE L1 0 6304 6101 4611 205 69 52 chr5 15761288 15763184 -187322348 + L1MA6 LINE L1 5005 7020 0 3259 93 9 9 chr5 15763291 15763743 -187321789 - MLT2A2 LTR ERVL -1 452 1 25 31 0 0 chr5 15764394 15764426 -187321106 + AT_rich Low_complexity Low_complexity 1 32 0 2034 131 0 26 chr5 15765294 15765607 -187319925 + AluSg SINE Alu 1 305 -5 252 59 0 0 chr5 15765670 15765704 -187319828 + (TG)n Simple_repeat Simple_repeat 2 35 0 738 278 66 5 chr5 15766017 15766229 -187319303 + MIR SINE MIR 8 232 -30 21 57 0 0 chr5 15766254 15766289 -187319243 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr5 15766329 15766361 -187319171 + AT_rich Low_complexity Low_complexity 1 32 0 556 115 18 0 chr5 15766657 15766770 -187318762 + (TAGA)n Simple_repeat Simple_repeat 3 117 0 264 353 98 20 chr5 15766778 15767073 -187318459 + L2 LINE L2 2325 2642 -672 327 305 69 11 chr5 15767139 15767313 -187318219 - MIR SINE MIR -16 246 63 185 254 164 74 chr5 15767520 15767642 -187317890 + L2 LINE L2 3139 3271 -1 705 238 84 5 chr5 15768583 15768785 -187316747 - MLT1A1 LTR MaLR 0 365 148 3204 123 20 2 chr5 15768830 15769332 -187316200 - L1PA13 LINE L1 0 6163 5653 549 148 11 0 chr5 15769332 15769420 -187316112 + L1PA13 LINE L1 5529 5620 -543 2353 126 0 17 chr5 15769420 15769776 -187315756 + THE1C LTR MaLR 24 373 -2 14513 186 20 2 chr5 15769783 15772647 -187312885 - L1PA13 LINE L1 -845 5301 2386 561 283 26 7 chr5 15772651 15772803 -187312729 - MLT1A1 LTR MaLR -209 156 2 19615 168 14 10 chr5 15772987 15775655 -187309877 - L1PA11 LINE L1 0 6174 3472 2172 122 24 29 chr5 15775655 15776032 -187309500 + THE1C LTR MaLR 1 375 0 19615 168 14 10 chr5 15776032 15778008 -187307524 - L1PA11 LINE L1 -2702 3472 1507 295 146 18 18 chr5 15778069 15778124 -187307408 - THE1C-int LTR MaLR -1594 57 3 1859 137 76 25 chr5 15778126 15778483 -187307049 - THE1C LTR MaLR 0 375 1 1120 190 35 9 chr5 15778483 15778715 -187306817 - THE1C LTR MaLR -137 238 1 275 267 12 12 chr5 15778745 15778831 -187306701 + LTR37B LTR ERV1 222 307 -161 24 0 0 0 chr5 15779938 15779962 -187305570 + AT_rich Low_complexity Low_complexity 1 24 0 808 222 27 53 chr5 15780555 15780780 -187304752 - MER20 DNA MER1_type 0 219 1 244 214 0 0 chr5 15780973 15781015 -187304517 + MLT1K LTR MaLR 201 242 -346 1375 192 75 153 chr5 15781636 15781674 -187303858 - MER67D LTR ERV1 0 514 475 2358 124 14 8 chr5 15781674 15782036 -187303496 + THE1B LTR MaLR 1 364 0 1375 192 75 153 chr5 15782036 15782554 -187302978 - MER67D LTR ERV1 -39 475 1 21 0 0 0 chr5 15782627 15782648 -187302884 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr5 15782686 15782721 -187302811 + AT_rich Low_complexity Low_complexity 1 35 0 2551 91 14 0 chr5 15783799 15784149 -187301383 - THE1A LTR MaLR 0 355 1 6215 151 65 7 chr5 15784149 15784743 -187300789 - THE1A-int LTR MaLR 0 1651 1093 1945 138 0 33 chr5 15784743 15785047 -187300485 - AluSq SINE Alu -19 294 1 6215 151 65 7 chr5 15785047 15785877 -187299655 - THE1A-int LTR MaLR -558 1093 3 1865 116 8 0 chr5 15785879 15786146 -187299386 - THE1A LTR MaLR 0 355 87 2367 160 31 12 chr5 15786153 15786571 -187298961 + MSTB LTR MaLR 1 426 0 352 275 0 0 chr5 15786671 15786762 -187298770 - MER3 DNA MER1_type -111 98 8 2231 160 28 28 chr5 15787308 15787740 -187297792 + MSTB1 LTR MaLR 1 432 0 938 338 51 20 chr5 15787961 15788552 -187296980 - L2 LINE L2 -906 2408 1800 30 0 0 0 chr5 15788989 15789019 -187296513 + AT_rich Low_complexity Low_complexity 1 30 0 21 89 0 0 chr5 15789346 15789402 -187296130 + AT_rich Low_complexity Low_complexity 1 56 0 2878 217 133 60 chr5 15789641 15790157 -187295375 - L1MC3 LINE L1 -60 7725 7248 2668 48 6 0 chr5 15790157 15790490 -187295042 + L1PA4 LINE L1 5821 6155 0 2878 217 133 60 chr5 15790490 15790969 -187294563 - L1MC3 LINE L1 -537 7248 6657 2220 198 14 14 chr5 15791052 15791472 -187294060 - MSTC LTR MaLR -6 422 3 3024 284 43 30 chr5 15791473 15792612 -187292920 - L1MCb LINE L1 -4889 1156 3 1280 160 0 5 chr5 15793302 15793515 -187292017 - L1PA15 LINE L1 0 6165 5954 356 286 121 57 chr5 15794499 15794779 -187290753 - L2 LINE L2 -4 3309 3012 * 481 295 0 0 chr5 15794772 15794911 -187290621 - MIR SINE MIR -38 224 86 212 186 17 0 chr5 15795146 15795205 -187290327 + (TA)n Simple_repeat Simple_repeat 2 61 0 329 277 36 9 chr5 15795395 15795507 -187290025 - MIR SINE MIR 0 262 148 26 0 0 0 chr5 15795633 15795659 -187289873 + AT_rich Low_complexity Low_complexity 1 26 0 1038 247 60 60 chr5 15796507 15797037 -187288495 - L1M4 LINE L1 -967 5179 4650 665 279 116 22 chr5 15797099 15797608 -187287924 - L1MEc LINE L1 -4153 2243 1687 13170 252 25 26 chr5 15797643 15799509 -187286023 + L1PB4 LINE L1 1 1868 -4939 2114 103 3 14 chr5 15799509 15799799 -187285733 - AluSx SINE Alu -12 300 14 13170 252 25 26 chr5 15799799 15800265 -187285267 + L1PB4 LINE L1 1868 2333 -4474 5550 28 0 0 chr5 15800265 15800914 -187284618 + L1PA3 LINE L1 5507 6155 0 13170 252 25 26 chr5 15800914 15801026 -187284506 + L1PB4 LINE L1 2333 2444 -4363 2357 157 23 23 chr5 15801026 15801382 -187284150 + MSTA LTR MaLR 1 359 -69 1664 189 18 0 chr5 15801382 15801668 -187283864 - AluJb SINE Alu -16 296 6 2357 157 23 23 chr5 15801668 15801739 -187283793 + MSTA LTR MaLR 358 428 0 13170 252 25 26 chr5 15801739 15802267 -187283265 + L1PB4 LINE L1 2444 2971 -3836 3069 139 12 10 chr5 15802267 15802779 -187282753 + MER75 DNA T2_type 1 513 -1 13170 252 25 26 chr5 15802779 15806069 -187279463 + L1PB4 LINE L1 2971 6807 0 25 75 0 0 chr5 15806073 15806126 -187279406 + AT_rich Low_complexity Low_complexity 1 53 0 465 350 69 41 chr5 15806231 15806341 -187279191 + L1ME3A LINE L1 5282 5387 -783 761 167 0 0 chr5 15806341 15806461 -187279071 + L1PB4 LINE L1 6022 6141 -15 465 350 69 41 chr5 15806461 15806991 -187278541 + L1ME3A LINE L1 5387 5940 -230 26 64 0 0 chr5 15807051 15807098 -187278434 + AT_rich Low_complexity Low_complexity 1 47 0 443 320 57 21 chr5 15807842 15808036 -187277496 + MIR SINE MIR 1 201 -61 1793 90 25 4 chr5 15808356 15808714 -187276818 + AluSc SINE Alu 35 397 0 212 231 15 31 chr5 15809309 15809374 -187276158 + (TATG)n Simple_repeat Simple_repeat 3 66 0 2377 114 0 11 chr5 15809940 15810291 -187275241 - THE1B LTR MaLR -17 347 1 1838 125 25 4 chr5 15810774 15811054 -187274478 - AluSg SINE Alu -24 286 1 25 51 0 0 chr5 15811054 15811093 -187274439 + AT_rich Low_complexity Low_complexity 1 39 0 265 130 0 56 chr5 15811098 15811152 -187274380 - AluSg/x SINE Alu -132 170 120 21 36 0 0 chr5 15811152 15811180 -187274352 + AT_rich Low_complexity Low_complexity 1 28 0 595 24 12 12 chr5 15812492 15812574 -187272958 + (TA)n Simple_repeat Simple_repeat 2 83 0 22 35 0 0 chr5 15812875 15812904 -187272628 + AT_rich Low_complexity Low_complexity 1 29 0 499 299 61 50 chr5 15813025 15813469 -187272063 + HAL1b LINE L1 149 597 -751 267 238 76 121 chr5 15813707 15813831 -187271701 - L2 LINE L2 -12 3301 3190 2043 162 12 0 chr5 15813831 15814164 -187271368 + MER1B DNA MER1_type 1 337 0 267 238 76 121 chr5 15814164 15814262 -187271270 - L2 LINE L2 -123 3190 3089 514 270 0 43 chr5 15814364 15814549 -187270983 - HERVL40 LTR ERVL -4256 1274 1098 1248 101 66 53 chr5 15814701 15814928 -187270604 - MER30 DNA MER1_type 0 230 1 1261 238 13 50 chr5 15815028 15815407 -187270125 - MLT1A1 LTR MaLR 0 365 1 237 330 27 9 chr5 15815482 15815594 -187269938 + LTR16C LTR ERVL 378 491 0 212 162 0 0 chr5 15815988 15816025 -187269507 + (CAA)n Simple_repeat Simple_repeat 2 38 0 683 236 17 28 chr5 15816060 15816238 -187269294 - FRAM SINE Alu 0 176 1 23 33 0 0 chr5 15816396 15816426 -187269106 + AT_rich Low_complexity Low_complexity 1 30 0 32 57 0 0 chr5 15818296 15818349 -187267183 + AT_rich Low_complexity Low_complexity 1 53 0 1799 168 3 0 chr5 15818785 15819070 -187266462 + AluJb SINE Alu 6 291 -21 24 0 0 0 chr5 15819229 15819253 -187266279 + AT_rich Low_complexity Low_complexity 1 24 0 2261 60 42 0 chr5 15819528 15819813 -187265719 + AluY SINE Alu 1 297 -14 27 49 0 0 chr5 15820025 15820066 -187265466 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr5 15820917 15820940 -187264592 + AT_rich Low_complexity Low_complexity 1 23 0 2213 105 3 0 chr5 15821259 15821564 -187263968 + AluSg1 SINE Alu 1 306 -3 30 0 0 0 chr5 15821854 15821884 -187263648 + AT_rich Low_complexity Low_complexity 1 30 0 2111 124 0 3 chr5 15822041 15822347 -187263185 - AluSx SINE Alu -7 305 1 2592 192 98 32 chr5 15823178 15823872 -187261660 - MER45R DNA AcHobo -1 1580 828 2084 187 57 9 chr5 15823872 15824278 -187261254 - LOR1b LTR ERV1 -2 459 29 257 50 0 25 chr5 15824278 15824318 -187261214 + (CAA)n Simple_repeat Simple_repeat 1 39 0 2084 187 57 9 chr5 15824318 15824349 -187261183 - LOR1b LTR ERV1 -432 29 1 2592 192 98 32 chr5 15824349 15824429 -187261103 - MER45R DNA AcHobo -753 828 755 22 0 0 0 chr5 15824617 15824639 -187260893 + AT_rich Low_complexity Low_complexity 1 22 0 1308 207 17 20 chr5 15824655 15824950 -187260582 - AluJo SINE Alu -18 294 1 296 346 0 44 chr5 15825627 15825763 -187259769 + LTR33 LTR ERVL 17 146 -375 2792 235 88 17 chr5 15825881 15825957 -187259575 - L1M4 LINE L1 -869 5277 5208 1684 181 25 0 chr5 15825957 15826271 -187259261 - L1PA16 LINE L1 0 6166 5845 2792 235 88 17 chr5 15826271 15827177 -187258355 - L1M4 LINE L1 -938 5208 4226 186 133 0 0 chr5 15827204 15827234 -187258298 + (TATG)n Simple_repeat Simple_repeat 1 30 0 492 287 33 0 chr5 15827356 15827478 -187258054 - L1M4 LINE L1 -2022 4124 3999 677 187 0 8 chr5 15827508 15827631 -187257901 - L1PA16 LINE L1 -3 6163 6042 242 183 0 61 chr5 15828799 15828881 -187256651 + (TA)n Simple_repeat Simple_repeat 2 78 0 894 192 78 0 chr5 15828991 15829158 -187256374 - AluJo SINE Alu -132 180 1 241 221 0 35 chr5 15829636 15829722 -187255810 - L1ME3A LINE L1 -194 5976 5894 1986 142 64 6 chr5 15829798 15830142 -187255390 - THE1B LTR MaLR 0 364 1 10269 105 1 2 chr5 15830142 15831723 -187253809 - THE1B-int LTR MaLR 0 1580 1 2388 122 48 20 chr5 15831723 15832077 -187253455 - THE1B LTR MaLR 0 364 1 238 255 51 10 chr5 15832093 15832191 -187253341 - L1ME3A LINE L1 -382 5796 5695 320 349 34 7 chr5 15832213 15832359 -187253173 + LTR16A LTR ERVL 1 150 -300 655 349 49 0 chr5 15832548 15832832 -187252700 + MERVL LTR ERVL 8 305 -4691 411 313 61 15 chr5 15832839 15833037 -187252495 + MERVL LTR ERVL 1693 1899 -3097 287 385 29 10 chr5 15833260 15833465 -187252067 + MERVL LTR ERVL 4738 4946 -539 517 274 75 53 chr5 15833991 15834552 -187250980 - L1ME3A LINE L1 -1319 4827 4255 713 138 9 0 chr5 15834554 15834663 -187250869 - THE1C LTR MaLR 0 375 266 28 29 0 0 chr5 15935256 15935291 -187150241 + AT_rich Low_complexity Low_complexity 1 35 0 186 103 0 0 chr5 15935291 15935320 -187150212 + (TG)n Simple_repeat Simple_repeat 2 30 0 913 62 62 0 chr5 15935587 15935716 -187149816 + L1PA13 LINE L1 6027 6163 0 25 75 0 0 chr5 15935840 15935893 -187149639 + AT_rich Low_complexity Low_complexity 1 53 0 4092 208 32 23 chr5 15937991 15938850 -187146682 + L1MC3 LINE L1 6725 7575 -210 2338 81 7 0 chr5 15938850 15939159 -187146373 + AluY SINE Alu 1 311 0 4092 208 32 23 chr5 15939159 15939223 -187146309 + L1MC3 LINE L1 7575 7637 -148 1224 163 42 102 chr5 15939223 15939584 -187145948 - MER44D DNA MER2_type 0 609 1 4092 208 32 23 chr5 15939584 15939659 -187145873 + L1MC3 LINE L1 7637 7733 -52 630 208 0 11 chr5 15939659 15939795 -187145737 + MLT1A1 LTR MaLR 8 126 -239 522 83 24 0 chr5 15939985 15940069 -187145463 - L1PA13 LINE L1 -147 6016 5931 857 286 22 41 chr5 15940097 15940637 -187144895 - L1ME3A LINE L1 -2369 3777 3254 350 246 51 51 chr5 15940785 15940903 -187144629 + L2 LINE L2 2102 2219 -1095 222 37 0 0 chr5 15941305 15941332 -187144200 + (TG)n Simple_repeat Simple_repeat 2 28 0 220 218 18 0 chr5 15942635 15942690 -187142842 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 338 178 11 33 chr5 15943386 15943476 -187142056 + L1MA8 LINE L1 6200 6287 -4 267 271 67 51 chr5 15943482 15943737 -187141795 + L1M4 LINE L1 4349 4607 -1539 954 101 25 0 chr5 15944009 15944167 -187141365 - HERVL LTR ERVL -147 5507 5346 182 316 40 13 chr5 15944275 15944351 -187141181 - L2 LINE L2 -780 2534 2457 699 210 7 45 chr5 15944413 15944701 -187140831 - MLT1A1 LTR MaLR 0 374 1 31 26 0 0 chr5 15944728 15944766 -187140766 + AT_rich Low_complexity Low_complexity 1 38 0 280 383 93 35 chr5 15944766 15945336 -187140196 - L2 LINE L2 -962 2352 1750 342 143 0 0 chr5 15945448 15945504 -187140028 - MLT2A2 LTR ERVL 0 515 460 265 344 0 0 chr5 15945506 15945631 -187139901 + (CATA)n Simple_repeat Simple_repeat 4 128 0 2987 91 20 2 chr5 15945632 15946038 -187139494 - MLT2A2 LTR ERVL -40 413 1 856 259 87 54 chr5 15946558 15947005 -187138527 - MLT1C LTR MaLR 0 467 6 737 229 18 6 chr5 15948592 15948758 -187136774 - L1MC3 LINE L1 -1218 6567 6400 3767 234 84 17 chr5 15948759 15949162 -187136370 - L1MC3 LINE L1 -748 5398 5024 306 0 0 0 chr5 15949162 15949196 -187136336 + (CA)n Simple_repeat Simple_repeat 2 35 0 3767 234 84 17 chr5 15949196 15950577 -187134955 - L1MC3 LINE L1 -1122 5024 4385 21 0 0 0 chr5 15951788 15951809 -187133723 + AT_rich Low_complexity Low_complexity 1 21 0 2076 117 10 0 chr5 15951862 15952161 -187133371 + AluSp SINE Alu 1 302 -11 213 152 43 0 chr5 15952656 15952702 -187132830 + (TG)n Simple_repeat Simple_repeat 1 48 0 21 0 0 0 chr5 15953120 15953141 -187132391 + AT_rich Low_complexity Low_complexity 1 21 0 323 334 132 24 chr5 15954054 15954470 -187131062 - L1MC3 LINE L1 -3417 2729 2269 37 62 0 0 chr5 15954633 15954698 -187130834 + AT_rich Low_complexity Low_complexity 1 65 0 247 258 16 0 chr5 15955269 15955331 -187130201 + (TG)n Simple_repeat Simple_repeat 2 64 0 342 0 0 0 chr5 15956109 15956147 -187129385 + (CA)n Simple_repeat Simple_repeat 2 39 0 303 49 0 0 chr5 15956146 15956187 -187129345 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 12905 159 44 8 chr5 15956187 15958512 -187127020 - Tigger1 DNA MER2_type -9 2409 1 486 290 50 35 chr5 15958512 15958795 -187126737 - L1MC4 LINE L1 -134 7908 7622 295 239 34 60 chr5 15959998 15960115 -187125417 + MER104 DNA Tc2 20 133 -47 425 238 50 38 chr5 15961080 15961240 -187124292 + MER46C DNA MER2_type 103 264 -74 24 53 0 0 chr5 15961306 15961344 -187124188 + AT_rich Low_complexity Low_complexity 1 38 0 1835 207 16 8 chr5 15961405 15961792 -187123740 - MLT1B LTR MaLR 0 390 1 21 0 0 0 chr5 15962256 15962277 -187123255 + AT_rich Low_complexity Low_complexity 1 21 0 1948 151 26 32 chr5 15962288 15962665 -187122867 + THE1C LTR MaLR 1 375 0 185 305 0 73 chr5 15963420 15963502 -187122030 - L3 LINE CR1 -617 960 885 674 236 72 29 chr5 15964390 15964737 -187120795 - L1M4 LINE L1 -2598 3548 3187 1097 229 103 0 chr5 15964798 15965069 -187120463 + L1MC3 LINE L1 7027 7325 -460 649 249 5 11 chr5 15965068 15965257 -187120275 + L1MC3 LINE L1 7594 7781 -4 * 2318 124 21 0 chr5 15965294 15965672 -187119860 - L1PA13 LINE L1 -1 6162 5777 959 135 12 5 chr5 15965672 15965832 -187119700 + L1PA13 LINE L1 5607 5754 -409 208 367 65 43 chr5 15966732 15966871 -187118661 + MIR SINE MIR 8 149 -113 1786 258 105 37 chr5 15967162 15967178 -187118354 + L1ME1 LINE L1 4979 4992 -1172 198 118 0 0 chr5 15967178 15967212 -187118320 + (CA)n Simple_repeat Simple_repeat 2 35 0 1786 258 105 37 chr5 15967212 15968280 -187117252 + L1ME1 LINE L1 4992 6152 -12 2048 122 0 34 chr5 15968411 15968732 -187116800 - AluSg SINE Alu 0 310 1 322 262 0 47 chr5 15968931 15969021 -187116511 + T-rich Low_complexity Low_complexity 3 85 -59 1567 112 23 11 chr5 15969021 15969281 -187116251 - L1MA1 LINE L1 0 6302 6040 322 262 0 47 chr5 15969281 15969339 -187116193 + T-rich Low_complexity Low_complexity 85 144 0 1460 196 31 78 chr5 15969484 15969867 -187115665 - MLT1A1 LTR MaLR 0 365 1 2272 70 0 7 chr5 15970883 15971182 -187114350 + AluY SINE Alu 1 297 -14 34 55 0 0 chr5 15972631 15972686 -187112846 + AT_rich Low_complexity Low_complexity 1 55 0 36670 95 10 3 chr5 15974188 15979177 -187106355 - HERVL LTR ERVL -2 5652 626 2591 164 38 10 chr5 15980032 15980539 -187104993 - L1PA16 LINE L1 0 6166 5646 772 216 0 0 chr5 15980558 15980725 -187104807 - L1P LINE L1 -2631 3515 3349 1024 242 0 9 chr5 15981439 15981662 -187103870 - MER58A DNA MER1_type -1 223 3 21 36 0 0 chr5 15982102 15982130 -187103402 + AT_rich Low_complexity Low_complexity 1 28 0 2470 59 0 0 chr5 15982375 15982680 -187102852 - AluY SINE Alu -6 305 1 312 270 117 55 chr5 15982776 15982939 -187102593 - MIR SINE MIR -50 212 40 33 25 0 0 chr5 15983042 15983082 -187102450 + AT_rich Low_complexity Low_complexity 1 40 0 6217 137 36 3 chr5 15983333 15984340 -187101192 + Tigger2 DNA MER2_type 1676 2715 -3 11759 161 41 47 chr5 15988464 15990018 -187095514 + Tigger1 DNA MER2_type 1 1535 -883 2325 93 3 0 chr5 15990018 15990320 -187095212 + AluSx SINE Alu 1 303 -9 11759 161 41 47 chr5 15990320 15991199 -187094333 + Tigger1 DNA MER2_type 1535 2418 0 283 281 153 44 chr5 15991551 15991754 -187093778 - MLT1F LTR MaLR -298 244 20 1744 126 43 22 chr5 15993207 15993484 -187092048 + AluSq SINE Alu 1 283 -30 314 109 36 0 chr5 15993484 15993539 -187091993 + GA-rich Low_complexity Low_complexity 2 58 0 271 289 0 0 chr5 15993548 15993637 -187091895 + (CTGGGG)n Simple_repeat Simple_repeat 1 89 0 24 75 0 0 chr5 15993800 15993840 -187091692 + GC_rich Low_complexity Low_complexity 1 40 0 428 144 29 10 chr5 15994881 15994985 -187090547 + (TA)n Simple_repeat Simple_repeat 2 107 0 181 224 86 17 chr5 15996862 15996920 -187088612 + L2 LINE L2 3192 3253 -60 773 294 163 11 chr5 15997006 15997282 -187088250 - MLT1E2 LTR MaLR -7 619 302 2502 56 3 3 chr5 15997303 15997622 -187087910 + L1PA7 LINE L1 5835 6153 -1 523 228 0 105 chr5 15997779 15997965 -187087567 - MLT1E3 LTR MaLR -306 210 59 233 36 0 0 chr5 15998205 15998233 -187087299 + MSTA LTR MaLR 342 369 -59 388 261 107 102 chr5 15999738 15999954 -187085578 - L2 LINE L2 -1 3312 3092 192 77 0 0 chr5 15999954 15999980 -187085552 + (TG)n Simple_repeat Simple_repeat 2 27 0 388 261 107 102 chr5 15999980 16000146 -187085386 - L2 LINE L2 -221 3092 2928 561 268 98 16 chr5 16000156 16000350 -187085182 + MER63A DNA MER1_type 1 210 0 280 313 16 55 chr5 16000350 16000478 -187085054 - L2 LINE L2 -455 2859 2737 1595 179 152 16 chr5 16001319 16001693 -187083839 + MSTA LTR MaLR 1 425 -3 297 0 0 0 chr5 16002326 16002359 -187083173 + (TG)n Simple_repeat Simple_repeat 1 33 0 1544 186 68 22 chr5 16002466 16002788 -187082744 + MER1B DNA MER1_type 1 337 0 297 197 0 0 chr5 16002798 16002869 -187082663 + CT-rich Low_complexity Low_complexity 1 71 0 381 284 28 37 chr5 16005288 16005397 -187080135 - MLT1E LTR MaLR -441 152 45 379 284 97 94 chr5 16005524 16005866 -187079666 - MLT1E-int LTR MaLR -44 1327 985 317 310 47 35 chr5 16006003 16006174 -187079358 - MLT1E-int LTR MaLR -488 883 711 1042 293 48 6 chr5 16006421 16006888 -187078644 - MLT1E-int LTR MaLR -765 606 1 1776 275 65 27 chr5 16006893 16007449 -187078083 - MLT1E LTR MaLR -7 586 10 22 56 0 0 chr5 16008942 16008978 -187076554 + AT_rich Low_complexity Low_complexity 1 36 0 1232 184 31 0 chr5 16010000 16010223 -187075309 - AluJb SINE Alu -82 230 1 229 239 37 18 chr5 16010670 16010779 -187074753 + (TA)n Simple_repeat Simple_repeat 2 112 0 273 146 0 0 chr5 16010821 16010869 -187074663 + (TG)n Simple_repeat Simple_repeat 1 48 0 21 0 0 0 chr5 16010919 16010940 -187074592 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr5 16011016 16011047 -187074485 + AT_rich Low_complexity Low_complexity 1 31 0 1656 130 8 4 chr5 16011787 16012049 -187073483 - L1PA11 LINE L1 -15 6159 5897 353 260 16 16 chr5 16012761 16012884 -187072648 - LTR33 LTR ERVL -7 514 392 4955 235 50 10 chr5 16013856 16015205 -187070327 - L1M1 LINE L1 -5750 1815 22 306 0 0 0 chr5 16015244 16015278 -187070254 + (TA)n Simple_repeat Simple_repeat 2 35 0 216 0 0 0 chr5 16015279 16015303 -187070229 + (GA)n Simple_repeat Simple_repeat 1 24 0 273 277 118 30 chr5 16015303 16015599 -187069933 - L1MCc LINE L1 -4620 2502 2181 35 24 0 0 chr5 16015607 16015649 -187069883 + AT_rich Low_complexity Low_complexity 1 42 0 237 122 49 0 chr5 16015658 16015699 -187069833 - L1MA3 LINE L1 -23 6282 6240 1356 274 64 83 chr5 16015711 16017383 -187068149 - L1MCc LINE L1 -4906 1517 365 283 317 94 28 chr5 16017829 16018116 -187067416 - L1MCc LINE L1 -6100 323 18 204 40 0 0 chr5 16018338 16018363 -187067169 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5209 190 49 23 chr5 16018930 16020333 -187065199 - L1MCa LINE L1 -4413 2013 483 258 49 0 0 chr5 16020405 16020446 -187065086 + L1MA3 LINE L1 6265 6305 0 1638 245 55 39 chr5 16020464 16020953 -187064579 - L1MCa LINE L1 -5929 497 1 1092 277 19 60 chr5 16021044 16021474 -187064058 + MER92A LTR ERV1 1 412 0 275 377 29 0 chr5 16021719 16021857 -187063675 - MIR SINE MIR -115 147 6 406 240 10 0 chr5 16022417 16022513 -187063019 - FLAM_C SINE Alu -6 127 31 2289 133 55 38 chr5 16022516 16022739 -187062793 - MSTA LTR MaLR 0 428 193 2210 112 3 13 chr5 16022739 16023051 -187062481 - AluSx SINE Alu -3 309 1 2289 133 55 38 chr5 16023051 16023248 -187062284 - MSTA LTR MaLR -235 193 1 619 183 26 0 chr5 16024336 16024451 -187061081 - L1MC3 LINE L1 -1645 6140 6023 * 1114 215 102 50 chr5 16024444 16025222 -187060310 - L1MC3 LINE L1 -743 5403 4746 280 289 18 0 chr5 16025217 16025331 -187060201 - L1MC3 LINE L1 -1798 4348 4233 * 2076 232 40 8 chr5 16025341 16026000 -187059532 - L1 LINE L1 -2650 3496 2817 1665 161 3 31 chr5 16026018 16026336 -187059196 - AluSx SINE Alu 0 310 1 3344 247 45 47 chr5 16026336 16027531 -187058001 - L1M4 LINE L1 -1489 4657 3461 7606 27 3 7 chr5 16027531 16028877 -187056655 - L1PA4 LINE L1 0 6155 4810 3344 247 45 47 chr5 16028877 16028924 -187056608 - L1M4 LINE L1 -2685 3461 3415 2385 98 0 0 chr5 16028924 16029229 -187056303 + AluSc SINE Alu 3 307 -2 3344 247 45 47 chr5 16029229 16029623 -187055909 - L1M4 LINE L1 -2731 3415 3024 751 320 119 8 chr5 16029616 16029985 -187055547 - L1MCb LINE L1 -5430 615 206 * 5485 136 37 0 chr5 16029990 16030819 -187054713 - HERVL18 LTR ERVL -790 5257 4398 5626 172 1 2 chr5 16030825 16031686 -187053846 - HERVL18 LTR ERVL -2468 3579 2720 1429 137 11 2 chr5 16031685 16031956 -187053576 - HERVL18 LTR ERVL -3595 2452 2119 * 1140 188 17 10 chr5 16031955 16032312 -187053220 - HERVL18 LTR ERVL -4237 1810 1388 * 471 209 0 0 chr5 16032300 16032391 -187053141 - HERVL18 LTR ERVL -5086 961 871 * 3965 219 22 3 chr5 16032389 16033144 -187052388 - HERVL18 LTR ERVL -5277 770 1 713 254 136 55 chr5 16033150 16033480 -187052052 - LTR18A LTR ERVL 0 357 1 1009 269 86 35 chr5 16033619 16034047 -187051485 - MLT1D LTR MaLR -5 500 51 2302 60 7 0 chr5 16035152 16035434 -187050098 - AluY SINE Alu -27 284 1 27 62 0 0 chr5 16035441 16035489 -187050043 + AT_rich Low_complexity Low_complexity 1 48 0 190 385 101 0 chr5 16035877 16035986 -187049546 - L3 LINE CR1 -417 1160 1041 852 234 155 33 chr5 16036499 16036951 -187048581 + Charlie4a DNA MER1_type 1 507 -1 2184 86 16 13 chr5 16036957 16037261 -187048271 + AluY SINE Alu 1 305 -6 4991 186 16 0 chr5 16037467 16038395 -187047137 - L1MC1 LINE L1 -5 6328 5386 263 189 0 0 chr5 16038408 16038461 -187047071 + Tigger1 DNA MER2_type 7 59 -2359 5648 91 23 9 chr5 16038461 16038754 -187046778 - L1PA10 LINE L1 -15 6153 5861 1419 228 48 70 chr5 16038754 16039655 -187045877 - L1MC3 LINE L1 -757 5389 4978 2123 115 3 3 chr5 16039952 16040247 -187045285 - AluSx SINE Alu -17 295 1 352 356 79 50 chr5 16041757 16042400 -187043132 + HERVL LTR ERVL 1454 2115 -3539 699 252 45 36 chr5 16042467 16042796 -187042736 - L1MC3 LINE L1 -1503 4643 4307 382 292 121 38 chr5 16042806 16043121 -187042411 - L1MC3 LINE L1 -2003 4143 3803 894 76 61 0 chr5 16043528 16043659 -187041873 - MER85 DNA T2_type 0 139 1 495 255 26 57 chr5 16044161 16044353 -187041179 + Ricksha DNA DNA 9 194 -3052 * 931 186 89 13 chr5 16044212 16044449 -187041083 - Ricksha DNA DNA -14 3232 2978 2489 154 39 25 chr5 16044449 16044884 -187040648 - Ricksha DNA DNA -1116 2130 1690 871 186 42 7 chr5 16044876 16045075 -187040457 - Ricksha DNA DNA -1899 147 1 * 1012 203 188 32 chr5 16045328 16045732 -187039800 + MLT1C LTR MaLR 1 467 0 306 125 0 0 chr5 16046329 16046377 -187039155 + (A)n Simple_repeat Simple_repeat 1 48 0 22 80 0 0 chr5 16046730 16046780 -187038752 + AT_rich Low_complexity Low_complexity 1 50 0 1407 237 106 3 chr5 16048993 16049351 -187036181 - MSTD LTR MaLR 0 396 2 1408 160 109 37 chr5 16049677 16050027 -187035505 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr5 16050138 16050159 -187035373 + AT_rich Low_complexity Low_complexity 1 21 0 387 313 61 30 chr5 16050518 16050716 -187034816 + MLT1H LTR MaLR 5 208 -341 410 284 15 8 chr5 16051586 16051642 -187033890 - MLT1E3 LTR MaLR 0 624 570 1561 101 4 40 chr5 16051642 16051906 -187033626 + AluSp SINE Alu 65 320 0 410 284 15 8 chr5 16051906 16051982 -187033550 - MLT1E3 LTR MaLR -54 570 490 5485 90 19 3 chr5 16051982 16052728 -187032804 - HERVL LTR ERVL -3248 2406 1649 833 184 74 23 chr5 16053118 16053335 -187032197 - L1ME LINE L1 -614 5548 5321 1732 282 52 16 chr5 16053351 16054180 -187031352 - L1ME LINE L1 -907 5239 4381 332 281 116 14 chr5 16054441 16054587 -187030945 + MLT1H LTR MaLR 382 542 -7 21 0 0 0 chr5 16054918 16054939 -187030593 + AT_rich Low_complexity Low_complexity 1 21 0 185 371 126 0 chr5 16055147 16055314 -187030218 - L2 LINE L2 -672 2642 2455 1884 114 53 23 chr5 16056397 16056696 -187028836 - AluSg SINE Alu 0 310 3 185 196 18 0 chr5 16057026 16057082 -187028450 + CT-rich Low_complexity Low_complexity 2 58 0 23 33 0 0 chr5 16057437 16057467 -187028065 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr5 16058677 16058708 -187026824 + AT_rich Low_complexity Low_complexity 1 31 0 587 313 100 42 chr5 16058967 16059376 -187026156 - L2 LINE L2 0 3313 2881 48 67 0 0 chr5 16059665 16059755 -187025777 + AT_rich Low_complexity Low_complexity 1 90 0 302 115 19 0 chr5 16059921 16059973 -187025559 + GA-rich Low_complexity Low_complexity 4 56 0 381 58 0 0 chr5 16060494 16060546 -187024986 + (TG)n Simple_repeat Simple_repeat 2 53 0 278 270 95 16 chr5 16061253 16061379 -187024153 + MIR SINE MIR 75 210 -52 1883 27 0 0 chr5 16061527 16061747 -187023785 - L1PA3 LINE L1 -1949 4197 3978 9789 28 8 0 chr5 16061748 16063686 -187021846 + L1PA3 LINE L1 4211 6155 0 3322 156 52 17 chr5 16063686 16064314 -187021218 + L1PB4 LINE L1 5484 6140 -16 1209 283 120 25 chr5 16064423 16065258 -187020274 - L1ME3A LINE L1 -86 6084 5173 860 272 16 10 chr5 16065473 16065785 -187019747 - L1ME3A LINE L1 -1367 4779 4466 22 35 0 0 chr5 16065819 16065848 -187019684 + AT_rich Low_complexity Low_complexity 1 29 0 1042 207 82 28 chr5 16065863 16066159 -187019373 - L1MB8 LINE L1 -12 6166 5848 271 344 48 0 chr5 16066862 16066987 -187018545 + L2 LINE L2 3179 3309 -4 22 0 0 0 chr5 16067353 16067375 -187018157 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr5 16067870 16067895 -187017637 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr5 16068667 16068688 -187016844 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr5 16068927 16068950 -187016582 + (A)n Simple_repeat Simple_repeat 1 23 0 362 341 114 26 chr5 16069684 16069992 -187015540 + MLT1I LTR MaLR 1 335 -74 25 0 0 0 chr5 16070138 16070163 -187015369 + AT_rich Low_complexity Low_complexity 1 25 0 528 190 72 138 chr5 16070478 16070606 -187014926 + MER20 DNA MER1_type 38 150 -69 477 0 0 0 chr5 16070606 16070659 -187014873 + (CA)n Simple_repeat Simple_repeat 1 53 0 528 190 72 138 chr5 16070659 16070725 -187014807 + MER20 DNA MER1_type 150 219 0 1868 112 42 14 chr5 16071016 16071303 -187014229 + AluSx SINE Alu 1 295 -17 305 375 33 25 chr5 16071727 16071970 -187013562 - L2 LINE L2 -869 2445 2201 * 707 284 28 14 chr5 16071962 16072180 -187013352 - MIR SINE MIR -2 260 40 1484 242 14 16 chr5 16072746 16073110 -187012422 - MLT1A1 LTR MaLR -2 363 1 21 36 0 0 chr5 16073158 16073186 -187012346 + AT_rich Low_complexity Low_complexity 1 28 0 423 0 0 0 chr5 16073867 16073914 -187011618 + (CA)n Simple_repeat Simple_repeat 2 48 0 218 284 204 0 chr5 16076186 16076274 -187009258 - L2 LINE L2 0 3313 3208 245 167 15 76 chr5 16076466 16076532 -187009000 - L1MCa LINE L1 -5720 844 783 204 231 19 0 chr5 16076615 16076667 -187008865 + T-rich Low_complexity Low_complexity 2 54 0 1244 264 82 23 chr5 16076670 16077185 -187008347 - L1MCa LINE L1 -5493 552 8 7547 202 41 5 chr5 16078637 16081259 -187004273 + L1PA16 LINE L1 3437 6153 -13 51 0 0 0 chr5 16081259 16081310 -187004222 + AT_rich Low_complexity Low_complexity 1 51 0 221 270 10 0 chr5 16081650 16081750 -187003782 + GA-rich Low_complexity Low_complexity 4 104 0 1983 261 83 26 chr5 16081783 16082638 -187002894 - L1M4 LINE L1 -5034 1821 908 231 205 154 0 chr5 16082650 16082728 -187002804 - L1M4 LINE L1 -6664 195 106 543 280 143 19 chr5 16082837 16083376 -187002156 + L1M4 LINE L1 3898 4503 -1643 5317 118 2 2 chr5 16083410 16085015 -187000517 - L1PA13 LINE L1 -4 6159 4533 10586 209 44 22 chr5 16085126 16088387 -186997145 + L1M1 LINE L1 2233 5562 -743 455 144 89 0 chr5 16088547 16088637 -186996895 + MER4A LTR ERV1 1 98 -566 1518 134 22 76 chr5 16088637 16089002 -186996530 + MER4A LTR ERV1 261 664 0 226 156 22 0 chr5 16089187 16089232 -186996300 - MLT2B1 LTR ERVL 0 464 419 1278 213 94 2 chr5 16089313 16089686 -186995846 - MLT2B1 LTR ERVL -56 459 1 1485 188 0 17 chr5 16089793 16090091 -186995441 - MER4A LTR ERV1 0 664 372 406 125 42 31 chr5 16090140 16090236 -186995296 - MER4A LTR ERV1 -567 97 1 353 293 78 53 chr5 16090313 16090596 -186994936 + L1M4 LINE L1 3086 3375 -2771 1768 135 55 50 chr5 16091843 16092205 -186993327 - THE1B LTR MaLR 0 364 1 11797 102 4 0 chr5 16092205 16093779 -186991753 - THE1B-int LTR MaLR 0 1580 1 1741 138 92 43 chr5 16093779 16094126 -186991406 - THE1B LTR MaLR 0 364 1 315 209 0 30 chr5 16094301 16094368 -186991164 + MER50 LTR ERV1 11 75 -659 2057 207 49 6 chr5 16094483 16094994 -186990538 + MER50 LTR ERV1 202 734 0 324 291 68 19 chr5 16095738 16095841 -186989691 - MIR SINE MIR -122 140 33 253 315 117 5 chr5 16096539 16096752 -186988780 - MLT1I-int LTR MaLR -850 521 285 1592 178 36 0 chr5 16097105 16097380 -186988152 - AluJb SINE Alu -17 295 11 1983 183 57 20 chr5 16097785 16098245 -186987287 + LTR9B LTR ERV1 7 483 -161 189 0 0 0 chr5 16098964 16098985 -186986547 + (TA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr5 16099523 16099545 -186985987 + AT_rich Low_complexity Low_complexity 1 22 0 1881 147 77 14 chr5 16100800 16101153 -186984379 + THE1C LTR MaLR 1 375 0 391 210 1 10 chr5 16101170 16101269 -186984263 - MLT1I LTR MaLR -3 421 317 200 208 0 57 chr5 16101730 16101783 -186983749 + A-rich Low_complexity Low_complexity 4 53 0 21 0 0 0 chr5 16101809 16101830 -186983702 + AT_rich Low_complexity Low_complexity 1 21 0 385 274 76 61 chr5 16102034 16102231 -186983301 + MIR SINE MIR 63 262 0 1562 194 7 10 chr5 16102309 16102598 -186982934 - AluJb SINE Alu -23 289 2 27 0 0 0 chr5 16102598 16102625 -186982907 + AT_rich Low_complexity Low_complexity 1 27 0 1285 225 10 40 chr5 16102699 16103001 -186982531 - AluJb SINE Alu -15 297 5 506 245 22 14 chr5 16103010 16103149 -186982383 - FLAM_C SINE Alu -3 140 1 1523 187 3 10 chr5 16103213 16103502 -186982030 + AluJb SINE Alu 13 299 -13 1122 249 52 33 chr5 16103655 16104020 -186981512 - MLT1A2 LTR MaLR -2 372 1 1365 196 66 0 chr5 16104080 16104381 -186981151 + L1MA9 LINE L1 5468 5788 -503 2409 168 46 5 chr5 16104387 16104798 -186980734 - MSTA LTR MaLR 0 428 1 293 222 0 14 chr5 16104798 16104870 -186980662 - MSTA-int LTR MaLR 0 1651 1581 8044 193 16 23 chr5 16104876 16106513 -186979019 - MSTA-int LTR MaLR -24 1627 2 2059 199 49 2 chr5 16106522 16106929 -186978603 - MSTA LTR MaLR -2 426 1 2011 185 27 35 chr5 16106943 16107457 -186978075 + L1MA9 LINE L1 5803 6312 0 217 358 0 0 chr5 16107793 16107860 -186977672 - L2 LINE L2 -84 3188 3122 45 79 0 0 chr5 16109936 16110037 -186975495 + AT_rich Low_complexity Low_complexity 1 101 0 4656 153 42 25 chr5 16110560 16111448 -186974084 - MER4D LTR ERV1 0 903 1 1236 240 121 37 chr5 16112776 16113142 -186972390 + MER90 LTR ERV1 1 424 -151 1853 178 7 0 chr5 16113142 16113446 -186972086 + AluSx SINE Alu 1 306 -6 1236 240 121 37 chr5 16113446 16113592 -186971940 + MER90 LTR ERV1 424 556 -19 353 212 18 26 chr5 16113601 16113714 -186971818 + Charlie1a DNA MER1_type 69 180 -1275 1345 95 16 33 chr5 16113833 16114075 -186971457 + L1MA1 LINE L1 6064 6301 -1 954 208 14 0 chr5 16114087 16114299 -186971233 - L1MD3 LINE L1 -52 7943 7729 551 172 20 0 chr5 16114915 16115014 -186970518 + FLAM_C SINE Alu 13 113 -30 622 150 158 8 chr5 16116494 16116621 -186968911 + MSTA LTR MaLR 283 428 0 234 234 78 0 chr5 16116764 16116841 -186968691 - Charlie8 DNA MER1_type -989 1428 1346 * 257 257 32 53 chr5 16116840 16117059 -186968473 - Charlie8 DNA MER1_type -2116 301 26 1758 113 3 42 chr5 16117094 16117404 -186968128 - AluSx SINE Alu -10 302 5 806 127 54 95 chr5 16117456 16117771 -186967761 + L1PA14 LINE L1 5770 6071 -90 640 250 44 40 chr5 16117939 16118187 -186967345 - LTR10D LTR ERV1 -145 368 120 237 283 0 0 chr5 16118541 16118594 -186966938 + MER5A DNA MER1_type 1 53 -136 264 178 0 0 chr5 16119131 16119176 -186966356 - Alu SINE Alu -254 45 1 261 343 86 0 chr5 16119180 16119285 -186966247 - MIR SINE MIR -59 149 36 1837 169 23 7 chr5 16119325 16119632 -186965900 + AluJo SINE Alu 1 312 0 1822 146 7 14 chr5 16119654 16119970 -186965562 - AluSx SINE Alu 0 314 1 752 206 88 21 chr5 16120024 16120218 -186965314 + MER20 DNA MER1_type 13 219 0 1393 52 0 0 chr5 16120287 16120461 -186965071 + THE1B LTR MaLR 1 174 -190 2201 126 3 7 chr5 16120780 16121089 -186964443 - AluSg SINE Alu -2 308 1 1943 238 65 22 chr5 16121144 16121698 -186963834 - MLT1E LTR MaLR -4 589 12 868 127 169 0 chr5 16121884 16122050 -186963482 - MSTA LTR MaLR -232 196 3 234 91 0 0 chr5 16122081 16122114 -186963418 + (A)n Simple_repeat Simple_repeat 1 33 0 1482 123 46 42 chr5 16122256 16122516 -186963016 - THE1B LTR MaLR 0 364 104 347 82 0 0 chr5 16122510 16122559 -186962973 - AluSq SINE Alu -121 182 134 * 722 182 0 0 chr5 16122559 16122691 -186962841 - AluJo/FLAM SINE Alu -170 132 1 510 301 101 37 chr5 16122808 16123183 -186962349 + LTR33 LTR ERVL 1 399 -122 231 198 83 62 chr5 16124715 16124811 -186960721 - MIR3 SINE MIR -48 160 63 2116 154 23 5 chr5 16125743 16126140 -186959392 + MSTA-int LTR MaLR 1248 1651 0 492 173 19 10 chr5 16126140 16126244 -186959288 + MSTA LTR MaLR 1 105 -323 299 286 125 5 chr5 16126347 16126571 -186958961 - MER113 DNA MER1_type? -107 414 164 2236 96 0 0 chr5 16126598 16126928 -186958604 - AluSq SINE Alu 0 331 2 990 188 0 0 chr5 16126963 16127128 -186958404 + AluJb SINE Alu 132 296 -16 1200 174 100 22 chr5 16127128 16127398 -186958134 - L1MB8 LINE L1 -124 6054 5764 23 0 0 0 chr5 16128011 16128034 -186957498 + AT_rich Low_complexity Low_complexity 1 23 0 271 367 54 0 chr5 16129070 16129217 -186956315 + L2 LINE L2 2797 2951 -363 327 325 56 6 chr5 16130097 16130257 -186955275 + L1MC4a LINE L1 5591 5758 -2050 262 211 130 32 chr5 16130266 16130389 -186955143 + L1MC4a LINE L1 5785 5919 -1889 1306 248 98 19 chr5 16130621 16131287 -186954245 - Looper DNA T2_type -805 753 36 270 314 16 0 chr5 16131855 16131976 -186953556 + L1MEd LINE L1 596 718 -5401 2089 241 76 105 chr5 16132014 16133139 -186952393 - MER52A LTR ERV1 0 1755 664 621 305 87 40 chr5 16133147 16133550 -186951982 + L1MEd LINE L1 755 1176 -4943 343 317 38 11 chr5 16134064 16134247 -186951285 + L1MEd LINE L1 2455 2642 -3487 361 268 67 6 chr5 16134417 16134581 -186950951 + L1MEd LINE L1 2866 3039 -3090 1364 243 56 12 chr5 16134887 16135747 -186949785 + Charlie1 DNA MER1_type 1645 2601 -160 2100 130 140 13 chr5 16135763 16136141 -186949391 - MSTA LTR MaLR 0 428 3 8140 209 35 3 chr5 16136148 16137742 -186947790 - MSTA-int LTR MaLR -6 1645 1 1624 155 160 37 chr5 16137742 16138123 -186947409 - MSTA LTR MaLR 0 428 1 260 257 73 15 chr5 16138156 16138292 -186947240 + Charlie1 DNA MER1_type 2618 2761 0 5197 141 104 36 chr5 16138549 16139732 -186945800 - MER11A LTR ERVK 0 1266 4 6833 75 4 0 chr5 16140054 16141495 -186944037 - L1PA8 LINE L1 -7 6165 4726 30 27 0 0 chr5 16141526 16141563 -186943969 + AT_rich Low_complexity Low_complexity 1 37 0 284 209 0 30 chr5 16145786 16145853 -186939679 - MIR SINE MIR -70 192 128 199 308 0 0 chr5 16146089 16146141 -186939391 + MIR SINE MIR 3 54 -208 256 131 66 0 chr5 16146158 16146219 -186939313 + MER41B LTR ERV1 481 545 -90 1718 237 109 31 chr5 16146935 16147708 -186937824 + Looper DNA T2_type 19 851 -707 427 228 22 52 chr5 16148496 16148632 -186936900 - LTR45 LTR ERV1 0 525 394 1945 217 80 5 chr5 16148772 16149196 -186936336 + LTR32 LTR ERVL 16 471 0 1192 91 0 0 chr5 16150026 16150191 -186935341 - L1PA8 LINE L1 -5 6167 6003 362 316 84 10 chr5 16150480 16150696 -186934836 + MIR SINE MIR 19 250 -12 2068 134 3 0 chr5 16151258 16151557 -186933975 + AluSq SINE Alu 1 300 -13 2097 124 7 3 chr5 16151782 16152080 -186933452 + AluSx SINE Alu 1 299 -13 436 242 121 16 chr5 16153463 16153587 -186931945 - MIR SINE MIR -125 137 1 198 279 48 77 chr5 16153587 16153639 -186931893 + MIR SINE MIR 154 202 -60 38 51 0 0 chr5 16154647 16154706 -186930826 + AT_rich Low_complexity Low_complexity 1 59 0 12428 199 42 16 chr5 16154707 16158829 -186926703 + L1MA6 LINE L1 2747 6999 -3 1012 171 25 75 chr5 16159324 16159563 -186925969 + L1M2 LINE L1 5533 5759 -541 5865 255 30 22 chr5 16159583 16161554 -186923978 + L1MC1 LINE L1 2879 4866 -1280 2479 189 17 11 chr5 16161561 16162081 -186923451 + L1MC1 LINE L1 5800 6322 -11 26 50 0 0 chr5 16162183 16162223 -186923309 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr5 16162351 16162373 -186923159 + AT_rich Low_complexity Low_complexity 1 22 0 1033 164 0 38 chr5 16162780 16162963 -186922569 - AluJo SINE Alu -17 295 120 712 199 8 0 chr5 16162997 16163128 -186922404 - AluJo SINE Alu -170 132 1 3512 148 2 2 chr5 16165582 16166109 -186919423 + MER1A DNA MER1_type 1 527 0 475 333 41 52 chr5 16166112 16166499 -186919033 + L1ME3A LINE L1 662 1044 -5352 253 294 28 35 chr5 16166602 16166745 -186918787 + L1ME3A LINE L1 2731 2872 -3343 1674 283 64 30 chr5 16166989 16167554 -186917978 - MLT1E LTR MaLR -9 584 1 757 298 104 53 chr5 16167566 16167697 -186917835 + LTR33 LTR ERVL 26 149 -372 2190 117 0 0 chr5 16167697 16167995 -186917537 + AluSx SINE Alu 15 312 0 757 298 104 53 chr5 16167995 16168333 -186917199 + LTR33 LTR ERVL 149 519 -2 478 258 66 59 chr5 16168353 16168640 -186916892 + L1ME3A LINE L1 3947 4235 -1980 26 0 0 0 chr5 16168773 16168799 -186916733 + AT_rich Low_complexity Low_complexity 1 26 0 228 182 0 0 chr5 16168857 16168901 -186916631 + L1ME3A LINE L1 4637 4680 -1535 446 278 115 36 chr5 16168976 16169394 -186916138 + L1ME3A LINE L1 4702 5152 -1063 1779 284 71 24 chr5 16169498 16169661 -186915871 + L1ME3A LINE L1 5324 5478 -761 2071 115 7 0 chr5 16169661 16169956 -186915576 + AluY SINE Alu 1 297 -14 1779 284 71 24 chr5 16169956 16170454 -186915078 + L1ME3A LINE L1 5478 6037 -202 261 0 0 0 chr5 16170454 16170483 -186915049 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1779 284 71 24 chr5 16170483 16170683 -186914849 + L1ME3A LINE L1 6037 6226 -13 383 316 113 39 chr5 16170694 16171029 -186914503 + L1MC3 LINE L1 5480 5839 -1946 29 28 0 0 chr5 16174094 16174130 -186911402 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr5 16174212 16174234 -186911298 + AT_rich Low_complexity Low_complexity 1 22 0 2521 153 2 5 chr5 16176333 16176738 -186908794 + MSTB-int LTR MaLR 1248 1651 0 927 219 55 48 chr5 16176738 16177030 -186908502 + MSTB LTR MaLR 1 294 -132 322 372 11 27 chr5 16177312 16177495 -186908037 + MER5A DNA MER1_type 7 186 -3 290 276 98 57 chr5 16177907 16178084 -186907448 - MIR3 SINE MIR -62 200 14 29 28 0 0 chr5 16178287 16178323 -186907209 + AT_rich Low_complexity Low_complexity 1 36 0 5007 67 6 0 chr5 16178424 16179078 -186906454 + L1PA7 LINE L1 5497 6154 0 296 219 0 0 chr5 16179489 16179553 -186905979 + MLT1A2 LTR MaLR 309 372 -2 315 0 0 0 chr5 16179716 16179751 -186905781 + (TG)n Simple_repeat Simple_repeat 2 36 0 2639 113 0 3 chr5 16180615 16180987 -186904545 + THE1C LTR MaLR 5 375 0 21 36 0 0 chr5 16181585 16181613 -186903919 + AT_rich Low_complexity Low_complexity 1 28 0 249 172 0 0 chr5 16182463 16182527 -186903005 + (TA)n Simple_repeat Simple_repeat 1 64 0 685 258 31 0 chr5 16183323 16183486 -186902046 - MER5A DNA MER1_type -6 183 16 399 138 11 32 chr5 16183993 16184087 -186901445 + GA-rich Low_complexity Low_complexity 2 93 0 676 282 7 0 chr5 16184177 16184326 -186901206 + MER45A DNA AcHobo 1 150 -28 1734 174 7 0 chr5 16185406 16185700 -186899832 - AluSx SINE Alu -14 298 3 388 347 67 0 chr5 16185829 16186022 -186899510 + MIR SINE MIR 31 236 -26 225 381 36 0 chr5 16186368 16186507 -186899025 - MIR3 SINE MIR -18 190 47 300 301 11 0 chr5 16187053 16187146 -186898386 + (TA)n Simple_repeat Simple_repeat 2 95 0 34 42 0 0 chr5 16187184 16187232 -186898300 + AT_rich Low_complexity Low_complexity 1 48 0 297 362 38 48 chr5 16187569 16187859 -186897673 + L2 LINE L2 2665 2950 -363 688 289 111 14 chr5 16188762 16189112 -186896420 + L1MC4a LINE L1 5591 5974 -1834 25 51 0 0 chr5 16189133 16189172 -186896360 + AT_rich Low_complexity Low_complexity 1 39 0 6565 79 14 0 chr5 16189320 16190632 -186894900 + L1PA8 LINE L1 4838 6169 -3 2886 202 66 28 chr5 16190756 16192277 -186893255 - L1MA9 LINE L1 -10 6302 4548 417 291 10 15 chr5 16192257 16192463 -186893069 + L1 LINE L1 3024 3228 -4337 * 5153 188 15 19 chr5 16192465 16193181 -186892351 + L1 LINE L1 4873 5585 -1980 2269 101 0 3 chr5 16193181 16193489 -186892043 + AluY SINE Alu 1 307 -4 5153 188 15 19 chr5 16193489 16193892 -186891640 + L1 LINE L1 5585 5988 -1577 1983 143 3 3 chr5 16193900 16194201 -186891331 - AluSq SINE Alu -12 301 1 4970 71 27 1 chr5 16195153 16195830 -186889702 + L1PA8 LINE L1 5465 6158 -14 2990 227 72 38 chr5 16196005 16196911 -186888621 - Charlie1 DNA MER1_type -199 2562 1626 2101 131 3 10 chr5 16197482 16197796 -186887736 - AluSx SINE Alu 0 312 1 25 31 0 0 chr5 16199312 16199344 -186886188 + AT_rich Low_complexity Low_complexity 1 32 0 202 203 43 14 chr5 16199808 16199877 -186885655 + (AAATG)n Simple_repeat Simple_repeat 4 74 0 811 221 169 66 chr5 16200157 16200515 -186885017 + MER50 LTR ERV1 10 439 -295 3189 111 47 12 chr5 16200515 16201009 -186884523 - MER9 LTR ERVK 0 511 1 811 221 169 66 chr5 16201009 16201166 -186884366 + MER50 LTR ERV1 439 578 -156 4337 31 4 0 chr5 16201207 16201725 -186883807 - L1PA3 LINE L1 0 6155 5636 4744 18 0 5 chr5 16201725 16202511 -186883021 + L1PA3 LINE L1 4825 5608 -547 852 204 0 0 chr5 16202512 16202674 -186882858 + MER50 LTR ERV1 573 734 0 2338 178 18 7 chr5 16202876 16203332 -186882200 + LOR1b LTR ERV1 1 461 0 22 56 0 0 chr5 16203442 16203478 -186882054 + AT_rich Low_complexity Low_complexity 1 36 0 307 336 18 0 chr5 16204004 16204117 -186881415 + (TG)n Simple_repeat Simple_repeat 2 116 0 1965 193 49 27 chr5 16204230 16204580 -186880952 - LOR1b LTR ERV1 -1 460 96 1966 140 3 0 chr5 16204580 16204873 -186880659 + AluSx SINE Alu 17 310 -2 1965 193 49 27 chr5 16204873 16204972 -186880560 - LOR1b LTR ERV1 -365 96 1 3389 21 9 17 chr5 16205311 16205730 -186879802 - L1PA3 LINE L1 -3 6152 5737 1869 202 77 7 chr5 16207740 16208155 -186877377 + MSTB2 LTR MaLR 14 457 0 207 0 0 0 chr5 16209377 16209400 -186876132 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 225 0 0 0 chr5 16209673 16209698 -186875834 + (TG)n Simple_repeat Simple_repeat 2 26 0 349 327 119 0 chr5 16210732 16210891 -186874641 - MIR SINE MIR 0 262 85 250 376 12 0 chr5 16211094 16211179 -186874353 + MLT1I LTR MaLR 223 308 -101 502 272 89 103 chr5 16211285 16211722 -186873810 - LTR16A LTR ERVL -3 447 17 523 338 40 15 chr5 16212047 16212248 -186873284 - LTR16A LTR ERVL -162 288 83 13832 74 6 3 chr5 16212331 16214112 -186871420 - HERVL-A1 LTR ERVL -3867 1787 1 2823 101 47 7 chr5 16214112 16214152 -186871380 - MLT2A1 LTR ERVL 0 444 407 486 88 0 0 chr5 16214152 16214220 -186871312 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 2823 101 47 7 chr5 16214220 16214606 -186870926 - MLT2A1 LTR ERVL -37 407 1 225 0 0 0 chr5 16215302 16215327 -186870205 + (TG)n Simple_repeat Simple_repeat 2 26 0 213 269 0 11 chr5 16215857 16215950 -186869582 + T-rich Low_complexity Low_complexity 5 96 0 8350 121 12 7 chr5 16216071 16217377 -186868155 - L1PA8A LINE L1 -1205 4941 3629 6156 95 3 1 chr5 16217377 16218557 -186866975 + L1PA8A LINE L1 4949 6127 -4 215 227 34 11 chr5 16218560 16218648 -186866884 + (TA)n Simple_repeat Simple_repeat 2 91 0 306 0 0 0 chr5 16218665 16218699 -186866833 + (TA)n Simple_repeat Simple_repeat 1 34 0 28 0 0 0 chr5 16219389 16219417 -186866115 + AT_rich Low_complexity Low_complexity 1 28 0 2301 92 7 0 chr5 16220265 16220571 -186864961 - AluSq SINE Alu -5 308 1 250 254 0 0 chr5 16220807 16220862 -186864670 + MLT1J LTR MaLR 110 164 -347 1987 97 0 71 chr5 16220981 16221292 -186864240 + AluSx SINE Alu 1 289 -23 262 239 28 0 chr5 16221517 16221588 -186863944 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 324 342 10 1 chr5 16221603 16221726 -186863806 + MIR SINE MIR 21 143 -65 2070 134 7 0 chr5 16222826 16223132 -186862400 - AluSc SINE Alu -1 308 1 2378 75 0 0 chr5 16223213 16223505 -186862027 + AluY SINE Alu 1 292 -19 339 150 0 0 chr5 16224048 16224108 -186861424 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 1221 212 43 11 chr5 16224367 16224645 -186860887 + MER90 LTR ERV1 328 614 0 3055 252 55 77 chr5 16225503 16226387 -186859145 - L1M4 LINE L1 -1328 4818 3991 314 22 0 65 chr5 16226387 16226433 -186859099 - L1PA12 LINE L1 -10 6158 6116 3055 252 55 77 chr5 16226433 16227302 -186858230 - L1M4 LINE L1 -2155 3991 3104 226 222 111 0 chr5 16228547 16228610 -186856922 + L1ME LINE L1 5675 5744 -377 183 318 11 80 chr5 16228848 16228936 -186856596 + L2 LINE L2 3181 3262 -10 22 0 0 0 chr5 16229037 16229059 -186856473 + AT_rich Low_complexity Low_complexity 1 22 0 225 286 32 0 chr5 16229920 16229983 -186855549 - L2 LINE L2 -7 3306 3242 369 0 0 0 chr5 16230072 16230087 -186855445 + (TG)n Simple_repeat Simple_repeat 1 56 0 369 0 0 0 chr5 16230087 16230128 -186855404 + (TG)n Simple_repeat Simple_repeat 2 42 0 2425 160 2 5 chr5 16230234 16230634 -186854898 - Tigger2 DNA MER2_type -53 2665 2267 360 246 0 0 chr5 16230618 16230687 -186854845 - Tigger2 DNA MER2_type -2649 69 1 * 373 338 113 42 chr5 16230723 16231102 -186854430 - L2 LINE L2 -2071 1243 838 1549 179 71 15 chr5 16232808 16233132 -186852400 - L1M3 LINE L1 -524 5810 5469 * 1648 182 119 7 chr5 16233130 16233543 -186851989 + L1MA10 LINE L1 5873 6331 -3 691 295 48 0 chr5 16233591 16233798 -186851734 + MIR SINE MIR 15 231 -31 832 251 4 39 chr5 16234013 16234244 -186851288 - MER58A DNA MER1_type -1 223 1 225 263 0 0 chr5 16235809 16235866 -186849666 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 538 287 113 12 chr5 16236741 16236943 -186848589 + MER5C DNA MER1_type 1 234 -90 3755 171 24 19 chr5 16236943 16237698 -186847834 - L1MA9 LINE L1 -13 6299 5541 538 287 113 12 chr5 16237698 16237742 -186847790 + MER5C DNA MER1_type 234 272 -52 318 67 0 0 chr5 16237746 16237791 -186847741 + (CA)n Simple_repeat Simple_repeat 1 45 0 366 42 0 0 chr5 16238602 16238650 -186846882 + (CA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr5 16238913 16238935 -186846597 + AT_rich Low_complexity Low_complexity 1 22 0 582 78 0 0 chr5 16239451 16239528 -186846004 + MADE1 DNA Mariner 1 77 -3 180 77 0 0 chr5 16240323 16240349 -186845183 + (CACCAT)n Simple_repeat Simple_repeat 2 27 0 25 90 0 0 chr5 16240922 16240989 -186844543 + AT_rich Low_complexity Low_complexity 1 67 0 589 302 94 47 chr5 16241798 16242182 -186843350 + MLT1I LTR MaLR 8 409 0 335 195 0 58 chr5 16243969 16244056 -186841476 - MER53 DNA DNA -85 104 23 * 402 178 0 56 chr5 16243978 16244068 -186841464 + MER53 DNA DNA 105 189 0 250 320 88 7 chr5 16245564 16245711 -186839821 - MIR SINE MIR -57 205 47 881 232 45 114 chr5 16245887 16245984 -186839548 + MLT1A1 LTR MaLR 3 105 -321 3136 166 103 3 chr5 16245984 16246636 -186838896 + LTR62 LTR ERVK 1 717 -2 881 232 45 114 chr5 16246636 16246931 -186838601 + MLT1A1 LTR MaLR 105 426 0 300 371 53 50 chr5 16246957 16247294 -186838238 + L2 LINE L2 2480 2817 -497 304 77 39 0 chr5 16247378 16247430 -186838102 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 205 148 19 19 chr5 16247573 16247627 -186837905 + CT-rich Low_complexity Low_complexity 4 57 0 1679 171 52 3 chr5 16247925 16248253 -186837279 - L1PB4 LINE L1 0 6156 5813 514 292 67 54 chr5 16248380 16248678 -186836854 - MLT1I LTR MaLR -29 380 79 285 272 37 12 chr5 16248831 16248912 -186836620 + L2 LINE L2 3186 3268 -4 288 91 0 0 chr5 16251008 16251052 -186834480 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr5 16251126 16251147 -186834385 + AT_rich Low_complexity Low_complexity 1 21 0 403 301 82 0 chr5 16253458 16253604 -186831928 + LTR16C LTR ERVL 108 265 -226 849 260 18 18 chr5 16253608 16253835 -186831697 - AluJo SINE Alu -16 296 70 2230 148 41 24 chr5 16256249 16256668 -186828864 - MSTA LTR MaLR -2 426 1 628 316 92 25 chr5 16257289 16257647 -186827885 - MLT1K LTR MaLR -27 561 180 288 0 0 0 chr5 16257647 16257679 -186827853 + (T)n Simple_repeat Simple_repeat 1 32 0 930 247 37 15 chr5 16258305 16258633 -186826899 - LTR37A LTR ERV1 -3 423 89 308 268 76 0 chr5 16260099 16260265 -186825267 + L1P LINE L1 3739 3920 -2226 376 61 0 0 chr5 16260375 16260424 -186825108 + MLT2A1 LTR ERVL 1 49 -404 1550 104 0 9 chr5 16260425 16260646 -186824886 + MLT2A1 LTR ERVL 219 437 -7 41269 84 23 7 chr5 16260647 16266209 -186819323 + HERVL-A1-A1 LTR ERVL 1 5654 0 2918 90 0 5 chr5 16266209 16266597 -186818935 + MLT2A1 LTR ERVL 1 386 -58 1616 143 122 31 chr5 16266597 16266918 -186818614 - THE1B LTR MaLR 0 364 15 10894 103 13 2 chr5 16266920 16268483 -186817049 - THE1B-int LTR MaLR 0 1580 1 503 109 0 87 chr5 16268483 16268575 -186816957 - THE1B LTR MaLR 0 355 272 252 121 61 91 chr5 16268573 16268639 -186816893 + MLT2A1 LTR ERVL 390 453 0 * 586 304 185 14 chr5 16268717 16269138 -186816394 - L1M4 LINE L1 -1540 4606 4114 450 174 37 9 chr5 16269176 16269285 -186816247 - L1MB7 LINE L1 0 6184 6073 459 283 60 46 chr5 16269292 16269436 -186816096 + L1ME LINE L1 5129 5270 -900 1935 153 27 0 chr5 16269436 16269731 -186815801 + AluSx SINE Alu 1 303 -9 459 283 60 46 chr5 16269731 16269934 -186815598 + L1ME LINE L1 5270 5481 -689 256 188 145 42 chr5 16270109 16270240 -186815292 + L1ME LINE L1 5725 5865 -305 211 345 25 50 chr5 16270534 16270653 -186814879 - MIR3 SINE MIR -84 124 9 231 227 0 15 chr5 16271639 16271705 -186813827 + L1MC4 LINE L1 7965 8029 -13 526 282 129 37 chr5 16271787 16272297 -186813235 - L1MC4 LINE L1 -412 7630 7074 26 50 0 0 chr5 16272687 16272727 -186812805 + AT_rich Low_complexity Low_complexity 1 40 0 2411 161 25 0 chr5 16273120 16273566 -186811966 + L1MA4 LINE L1 5838 6294 -6 236 318 123 53 chr5 16273736 16273906 -186811626 - MIR SINE MIR -47 215 34 4566 19 0 2 chr5 16274949 16275526 -186810006 + L1PA2 LINE L1 5619 6194 0 21 0 0 0 chr5 16276729 16276750 -186808782 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr5 16276942 16276970 -186808562 + AT_rich Low_complexity Low_complexity 1 28 0 270 374 62 65 chr5 16278305 16278658 -186806874 - L2 LINE L2 -5 3267 2916 222 321 101 34 chr5 16278705 16278942 -186806590 + L2 LINE L2 1472 1724 -1590 261 370 47 30 chr5 16278947 16279182 -186806350 - L2 LINE L2 -527 2787 2549 219 69 0 0 chr5 16279771 16279800 -186805732 + (CA)n Simple_repeat Simple_repeat 2 30 0 191 257 59 69 chr5 16279959 16280060 -186805472 + MIR3 SINE MIR 109 208 0 565 286 132 12 chr5 16280212 16280586 -186804946 - LTR16C LTR ERVL -10 481 33 249 196 0 0 chr5 16281711 16281762 -186803770 + (TG)n Simple_repeat Simple_repeat 1 51 0 303 326 0 22 chr5 16281762 16281854 -186803678 - L1MC4 LINE L1 -1340 6702 6613 305 143 111 0 chr5 16281777 16281840 -186803692 + L1MCa LINE L1 1995 2064 -4362 1309 238 79 9 chr5 16281898 16282239 -186803293 + MLT1A1 LTR MaLR 1 365 0 6545 210 83 34 chr5 16282239 16283894 -186801638 + MLT1A1-int LTR MaLR 1 1735 0 1114 261 64 3 chr5 16283894 16284188 -186801344 + MLT1A1 LTR MaLR 1 312 -53 2806 134 7 0 chr5 16284188 16284614 -186800918 + MER57B LTR ERV1 1 429 -5 355 158 0 0 chr5 16284619 16284676 -186800856 + MLT1A1 LTR MaLR 309 365 0 282 257 43 0 chr5 16284676 16284745 -186800787 + MLT1C LTR MaLR 84 155 -350 564 255 41 7 chr5 16284804 16284949 -186800583 + MLT1C LTR MaLR 318 467 0 1187 222 56 56 chr5 16285286 16285660 -186799872 - MLT1A2 LTR MaLR 0 374 1 26 30 0 0 chr5 16286453 16286486 -186799046 + AT_rich Low_complexity Low_complexity 1 33 0 365 168 69 59 chr5 16286596 16286697 -186798835 + MLT1A1 LTR MaLR 27 128 -377 * 1228 207 16 43 chr5 16286677 16286982 -186798550 + MLT1D LTR MaLR 209 505 0 892 178 35 11 chr5 16287132 16287306 -186798226 + L1MA2 LINE L1 16 193 -7372 * 9439 171 42 6 chr5 16287290 16289907 -186795625 + L1MA2 LINE L1 4025 6813 -910 262 67 44 0 chr5 16289907 16289952 -186795580 + (CTAAT)n Simple_repeat Simple_repeat 3 49 0 9439 171 42 6 chr5 16289952 16290894 -186794638 + L1MA2 LINE L1 6813 7720 -3 2253 109 0 0 chr5 16290915 16291218 -186794314 + AluSg SINE Alu 1 303 -7 242 164 18 0 chr5 16293225 16293280 -186792252 + (TA)n Simple_repeat Simple_repeat 1 56 0 1985 152 3 0 chr5 16294568 16294865 -186790667 + AluJb SINE Alu 1 298 -14 451 294 78 65 chr5 16295302 16295476 -186790056 + HAL1 LINE L1 1810 1980 -527 1908 224 32 60 chr5 16295476 16296043 -186789489 - MLT2B3 LTR ERVL 0 554 4 451 294 78 65 chr5 16296043 16296252 -186789280 + HAL1 LINE L1 1980 2198 -309 1986 321 37 11 chr5 16296781 16297529 -186788003 - ERVL LTR ERVL -2956 2808 2041 1763 237 63 83 chr5 16297752 16298727 -186786805 - L1M LINE L1 -749 5397 4460 190 342 13 25 chr5 16298857 16298936 -186786596 - MIR3 SINE MIR -32 176 99 397 276 152 69 chr5 16299243 16299913 -186785619 - LTR41 LTR ERVL -47 726 1 201 292 83 0 chr5 16300221 16300293 -186785239 + L2 LINE L2 1561 1638 -1676 2510 309 78 40 chr5 16300305 16301347 -186784185 + L2 LINE L2 1772 2864 -449 1726 246 52 6 chr5 16301347 16301830 -186783702 - MLT1D LTR MaLR 0 505 1 2510 309 78 40 chr5 16301830 16301960 -186783572 + L2 LINE L2 2864 2988 -325 395 303 14 28 chr5 16402313 16402458 -186683074 - L1M2 LINE L1 -5782 1067 925 316 263 68 25 chr5 16402621 16402739 -186682793 - L1M2 LINE L1 -6018 831 709 877 288 29 34 chr5 16403268 16403685 -186681847 - L1PA12 LINE L1 -7166 415 1 184 380 30 48 chr5 16404432 16404598 -186680934 - L2 LINE L2 -264 3008 2846 206 339 139 17 chr5 16404765 16404880 -186680652 + MIR3 SINE MIR 59 187 -21 4428 164 73 32 chr5 16404959 16405831 -186679701 - MER21A LTR ERV1 0 931 24 189 74 0 0 chr5 16405831 16405858 -186679674 + (TC)n Simple_repeat Simple_repeat 2 28 0 240 143 0 0 chr5 16405861 16405903 -186679629 + (CA)n Simple_repeat Simple_repeat 1 42 0 212 282 35 12 chr5 16408836 16408921 -186676611 + (CATA)n Simple_repeat Simple_repeat 4 90 0 387 0 0 0 chr5 16409513 16409556 -186675976 + (TG)n Simple_repeat Simple_repeat 1 43 0 753 191 33 16 chr5 16409891 16410074 -186675458 + L1MA6 LINE L1 6112 6297 -3 403 249 100 53 chr5 16410338 16410417 -186675115 - L1ME3A LINE L1 -286 5884 5810 387 315 11 11 chr5 16410417 16410595 -186674937 + MER5B DNA MER1_type 1 178 0 403 249 100 53 chr5 16410595 16410796 -186674736 - L1ME3A LINE L1 -360 5810 5591 2601 105 8 0 chr5 16410834 16411195 -186674337 - THE1B LTR MaLR 0 364 1 3627 197 57 3 chr5 16411347 16412355 -186673177 + L1PA16 LINE L1 4517 5575 -591 2653 146 81 6 chr5 16412364 16412857 -186672675 + L1PA16 LINE L1 5637 6166 0 1645 196 17 8 chr5 16412857 16413212 -186672320 + L1MB4 LINE L1 5815 6179 -1 422 300 141 7 chr5 16413377 16413654 -186671878 + L1M4 LINE L1 4514 4827 -1319 495 0 0 0 chr5 16413712 16413767 -186671765 + (CA)n Simple_repeat Simple_repeat 2 56 0 236 290 86 27 chr5 16413802 16414023 -186671509 + L1M4 LINE L1 5045 5278 -868 3327 212 97 54 chr5 16414177 16415403 -186670129 - L1M4 LINE L1 -1599 4547 3269 446 211 108 58 chr5 16415509 16415732 -186669800 - L1M4 LINE L1 -2314 3832 3599 2335 184 29 66 chr5 16415988 16416515 -186669017 + MLT2B2 LTR ERVL 1 507 -8 491 297 44 29 chr5 16416520 16416867 -186668665 - L1M4 LINE L1 -2841 3305 2932 23 0 0 0 chr5 16417009 16417032 -186668500 + AT_rich Low_complexity Low_complexity 1 23 0 1653 211 63 41 chr5 16419125 16419617 -186665915 + MLT1D LTR MaLR 3 505 0 2262 167 2 18 chr5 16421514 16421729 -186663803 - MLT1B LTR MaLR 0 390 173 901 29 50 7 chr5 16421729 16421868 -186663664 + (TCTA)n Simple_repeat Simple_repeat 2 146 0 2043 117 14 0 chr5 16421869 16422150 -186663382 - AluSx SINE Alu -25 287 3 2262 167 2 18 chr5 16422150 16422328 -186663204 - MLT1B LTR MaLR -216 174 1 443 188 26 60 chr5 16422754 16422871 -186662661 - MIR SINE MIR -44 218 106 1703 238 88 62 chr5 16422886 16423486 -186662046 - MLT1E2 LTR MaLR -8 618 1 271 298 75 92 chr5 16423565 16423954 -186661578 - MLT1H LTR MaLR -145 404 23 712 269 122 0 chr5 16424091 16424288 -186661244 - MER58A DNA MER1_type -3 221 1 888 308 39 57 chr5 16424293 16424635 -186660897 + MSTB2 LTR MaLR 1 414 -43 184 250 0 67 chr5 16425605 16425665 -186659867 + MER5B DNA MER1_type 3 58 -120 726 271 143 31 chr5 16425804 16426356 -186659176 - MLT1G LTR MaLR -7 583 13 228 159 87 58 chr5 16427131 16427200 -186658332 - L2 LINE L2 -1 3312 3242 186 189 0 0 chr5 16427926 16427963 -186657569 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 225 245 20 0 chr5 16429177 16429226 -186656306 - L2 LINE L2 -23 3290 3241 910 193 10 40 chr5 16429418 16429620 -186655912 + MSTC LTR MaLR 31 226 -202 696 24 0 0 chr5 16429645 16429727 -186655805 + (TG)n Simple_repeat Simple_repeat 1 82 0 1665 192 34 3 chr5 16429952 16430295 -186655237 - MLT2C1 LTR ERVL -39 425 1 276 301 62 9 chr5 16430902 16431015 -186654517 - MIR SINE MIR -66 196 78 2743 16 7 0 chr5 16431817 16432125 -186653407 - AluY SINE Alu -1 310 1 245 392 31 31 chr5 16433332 16433559 -186651973 + MIR SINE MIR 6 232 -30 187 364 0 0 chr5 16433851 16433917 -186651615 - L3 LINE CR1 -863 714 649 1028 296 71 21 chr5 16434085 16434608 -186650924 - MLT1H1 LTR MaLR 0 555 1 238 268 78 56 chr5 16434636 16434778 -186650754 - MLT1H1-int LTR MaLR -30 1341 1197 2268 95 0 3 chr5 16435312 16435606 -186649926 - AluSg SINE Alu -1 309 17 661 128 0 0 chr5 16435618 16435712 -186649820 - L1P LINE L1 -1545 4601 4508 573 266 32 48 chr5 16435976 16436038 -186649494 + MER20 DNA MER1_type 35 96 -123 2705 165 18 8 chr5 16436038 16436528 -186649004 - LOR1a LTR ERV1 -2 495 1 573 266 32 48 chr5 16436528 16436653 -186648879 + MER20 DNA MER1_type 96 219 0 5056 134 29 1 chr5 16436700 16437550 -186647982 - L1PA11 LINE L1 -804 5342 4469 5214 117 22 16 chr5 16437551 16438365 -186647167 + L1PA11 LINE L1 5356 6174 0 331 293 0 28 chr5 16438450 16438556 -186646976 - MLT1H1-int LTR MaLR -856 515 413 289 267 29 9 chr5 16438537 16438642 -186646890 - MLT1H1-int LTR MaLR -1261 110 4 * 1126 269 52 3 chr5 16438645 16439118 -186646414 - MLT1H1 LTR MaLR 0 555 1 189 0 0 0 chr5 16439709 16439730 -186645802 + (A)n Simple_repeat Simple_repeat 1 21 0 1676 166 16 29 chr5 16439737 16440050 -186645482 + AluJb SINE Alu 1 309 -3 342 301 109 60 chr5 16440432 16440862 -186644670 + HAL1b LINE L1 12 394 -954 1120 170 25 23 chr5 16440919 16441239 -186644293 + THE1C LTR MaLR 1 375 0 339 321 177 9 chr5 16441247 16441462 -186644070 + HAL1b LINE L1 478 728 -620 2517 69 0 0 chr5 16442040 16442344 -186643188 + AluY SINE Alu 1 304 -7 453 286 18 41 chr5 16442360 16442580 -186642952 + L1MC5 LINE L1 6963 7177 -784 391 272 80 34 chr5 16442778 16443017 -186642515 + L1MC5 LINE L1 7323 7572 -389 991 194 108 108 chr5 16443155 16443569 -186641963 + MLT1E2 LTR MaLR 137 553 -73 5660 114 18 18 chr5 16443569 16444599 -186640933 + L1PA15 LINE L1 5128 6165 0 991 194 108 108 chr5 16444599 16444674 -186640858 + MLT1E2 LTR MaLR 552 626 0 262 294 49 0 chr5 16444679 16444781 -186640751 + L1MC4 LINE L1 7761 7867 -175 304 259 38 84 chr5 16445461 16445592 -186639940 - L2 LINE L2 -10 3303 3179 758 235 94 0 chr5 16446144 16446357 -186639175 - MER33 DNA MER1_type -91 233 1 904 249 75 25 chr5 16446977 16447258 -186638274 - MLT1H LTR MaLR -19 530 236 219 69 0 0 chr5 16448222 16448251 -186637281 + (TG)n Simple_repeat Simple_repeat 2 30 0 950 249 100 39 chr5 16448251 16448661 -186636871 - L1ME LINE L1 -2377 3703 3269 323 122 92 6 chr5 16448735 16448899 -186636633 + (TA)n Simple_repeat Simple_repeat 2 179 0 334 132 66 32 chr5 16448899 16449321 -186636211 + (TATATG)n Simple_repeat Simple_repeat 1 436 0 242 89 63 25 chr5 16449421 16449500 -186636032 + (TA)n Simple_repeat Simple_repeat 1 82 0 1007 261 89 66 chr5 16449500 16450534 -186634998 - L1ME LINE L1 -4425 1655 482 319 294 18 88 chr5 16450685 16450898 -186634634 - L1ME LINE L1 -5592 478 273 306 328 118 20 chr5 16451303 16451498 -186634034 - L1ME LINE L1 -5845 225 12 23 54 0 0 chr5 16451837 16451874 -186633658 + AT_rich Low_complexity Low_complexity 1 37 0 575 271 135 14 chr5 16451894 16452175 -186633357 - MER46C DNA MER2_type -6 332 18 23 0 0 0 chr5 16452257 16452280 -186633252 + AT_rich Low_complexity Low_complexity 1 23 0 2008 175 39 3 chr5 16452446 16452828 -186632704 - MSTD LTR MaLR 0 396 1 22 99 0 0 chr5 16453515 16453586 -186631946 + AT_rich Low_complexity Low_complexity 1 71 0 5664 163 20 21 chr5 16454354 16454780 -186630752 + L1MA5 LINE L1 4683 5108 -1192 1824 122 0 0 chr5 16454780 16455034 -186630498 + AluSg SINE Alu 47 300 -10 5664 163 20 21 chr5 16455034 16456221 -186629311 + L1MA5 LINE L1 5108 6294 -6 505 231 32 26 chr5 16457302 16457458 -186628074 - LTR37B LTR ERV1 -1 467 311 420 207 47 98 chr5 16457572 16457765 -186627767 - LTR37B LTR ERV1 -206 262 80 21 36 0 0 chr5 16458100 16458128 -186627404 + AT_rich Low_complexity Low_complexity 1 28 0 346 304 41 50 chr5 16458320 16458540 -186626992 - L2 LINE L2 0 3313 3096 1565 229 24 41 chr5 16458540 16458955 -186626577 + LTR52 LTR ERVL 1 408 -13 579 305 110 64 chr5 16458968 16459662 -186625870 - L2 LINE L2 -227 3086 2360 4921 67 6 21 chr5 16459851 16460318 -186625214 - L1PA8 LINE L1 -4 6168 5712 1865 146 45 0 chr5 16460318 16460605 -186624927 + AluSx SINE Alu 1 300 -12 4921 67 6 21 chr5 16460605 16460807 -186624725 - L1PA8 LINE L1 -460 5712 5509 6461 106 19 11 chr5 16460810 16461493 -186624039 - L1P LINE L1 -755 5391 4696 315 0 0 0 chr5 16461493 16461528 -186624004 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6461 106 19 11 chr5 16461528 16461868 -186623664 - L1P LINE L1 -1450 4696 4360 528 219 16 8 chr5 16462591 16462719 -186622813 + L1MB7 LINE L1 6033 6161 -23 23 33 0 0 chr5 16463224 16463254 -186622278 + AT_rich Low_complexity Low_complexity 1 30 0 2563 190 91 12 chr5 16463483 16463978 -186621554 + MLT2B3 LTR ERVL 2 535 -19 225 0 0 0 chr5 16463979 16464004 -186621528 + (CCTA)n Simple_repeat Simple_repeat 3 27 0 341 346 6 19 chr5 16464160 16464316 -186621216 + MLT1I LTR MaLR 79 232 -177 315 0 0 0 chr5 16464769 16464804 -186620728 + (TA)n Simple_repeat Simple_repeat 1 35 0 231 289 0 11 chr5 16464804 16464894 -186620638 - L1MC4 LINE L1 -1339 6703 6615 225 234 0 16 chr5 16464865 16464929 -186620603 - L1MC4 LINE L1 -1339 6703 6641 * 226 250 0 33 chr5 16464973 16465065 -186620467 + L1MC4 LINE L1 6614 6702 -1340 236 239 28 0 chr5 16465126 16465197 -186620335 + L1MC3 LINE L1 6574 6646 -1139 256 240 0 62 chr5 16465205 16465301 -186620231 + L1MC4 LINE L1 6614 6703 -1339 324 341 7 22 chr5 16465745 16465883 -186619649 - MLT1I LTR MaLR -177 232 97 246 234 63 72 chr5 16465950 16466061 -186619471 - L1MC4 LINE L1 -1324 6718 6609 276 179 64 0 chr5 16466061 16466139 -186619393 + (TA)n Simple_repeat Simple_repeat 1 83 0 994 270 56 20 chr5 16466484 16466899 -186618633 - MLT2F LTR ERVL -122 541 67 1710 245 62 29 chr5 16467645 16468130 -186617402 - MLT1E2 LTR MaLR -9 617 117 3811 71 29 20 chr5 16469003 16469552 -186615980 + MER41A LTR ERV1 1 554 0 270 130 338 13 chr5 16469552 16469629 -186615903 + MER41A-int LTR ERV1 1 102 -5844 2095 182 50 66 chr5 16470449 16470695 -186614837 + MER67D LTR ERV1 6 254 -260 2030 106 48 10 chr5 16470695 16470987 -186614545 + AluSx SINE Alu 1 303 -9 2095 182 50 66 chr5 16470987 16471257 -186614275 + MER67D LTR ERV1 254 514 0 1433 249 78 42 chr5 16471708 16472207 -186613325 - LTR40a LTR ERVL 0 519 3 519 298 123 52 chr5 16472280 16472606 -186612926 + L2 LINE L2 2438 2786 -528 443 285 133 67 chr5 16472648 16473009 -186612523 + L2 LINE L2 2920 3304 -9 767 210 11 54 chr5 16473353 16473539 -186611993 - L1MC1 LINE L1 -1 6332 6155 1954 145 3 0 chr5 16473539 16473835 -186611697 + AluSx SINE Alu 1 297 -15 1590 176 0 17 chr5 16473845 16474135 -186611397 + AluSx SINE Alu 2 286 -26 1307 132 4 33 chr5 16474154 16474396 -186611136 - L1MC1 LINE L1 -174 6159 5925 1422 189 81 39 chr5 16474400 16474700 -186610832 + MER7A DNA MER2_type 2 317 -2721 2255 122 18 52 chr5 16474700 16475086 -186610446 + THE1C LTR MaLR 1 373 -2 1422 189 81 39 chr5 16475086 16475118 -186610414 + MER7A DNA MER2_type 317 346 0 2252 185 21 19 chr5 16475118 16475583 -186609949 - L1MC1 LINE L1 -410 5923 5458 3047 97 43 7 chr5 16476105 16476567 -186608965 - L1MA1 LINE L1 -5 6297 5819 328 62 0 0 chr5 16476594 16476642 -186608890 - Alu SINE Alu 0 300 253 2711 120 0 0 chr5 16476642 16477043 -186608489 - L1MA1 LINE L1 -474 5828 5428 7601 204 29 16 chr5 16477057 16478854 -186606678 - L1PB4 LINE L1 0 6156 4317 1455 97 0 5 chr5 16478854 16479061 -186606471 - AluY SINE Alu 0 311 106 7601 204 29 16 chr5 16479061 16479757 -186605775 - L1PB4 LINE L1 -1839 4317 3632 1023 193 14 41 chr5 16480068 16480286 -186605246 + AluJo SINE Alu 89 300 -12 989 264 56 56 chr5 16480371 16480834 -186604698 - MLT1C LTR MaLR -4 463 1 299 294 28 14 chr5 16480993 16481136 -186604396 + L1ME1 LINE L1 4980 5124 -1022 287 262 134 55 chr5 16481192 16481356 -186604176 + L1MD2 LINE L1 6011 6187 -172 2266 235 113 33 chr5 16481391 16482175 -186603357 + L1ME1 LINE L1 5315 6161 -5 220 349 173 34 chr5 16482410 16482943 -186602589 + L2 LINE L2 1642 2248 -1066 21 0 0 0 chr5 16483345 16483366 -186602166 + AT_rich Low_complexity Low_complexity 1 21 0 277 200 0 0 chr5 16483407 16483462 -186602070 - MSTD LTR MaLR -13 383 329 1102 221 31 3 chr5 16483462 16483788 -186601744 + L1 LINE L1 4844 5193 -953 * 2058 171 5 3 chr5 16483784 16484170 -186601362 - L1P LINE L1 -978 5168 4782 1980 139 3 15 chr5 16484170 16484495 -186601037 + L1PA13 LINE L1 5831 6163 0 3097 145 30 0 chr5 16484496 16485073 -186600459 + L1P5 LINE L1 5184 5773 -381 216 97 0 0 chr5 16485079 16485110 -186600422 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 1914 186 63 32 chr5 16485259 16485722 -186599810 + L1MC2 LINE L1 5858 6334 -10 5779 84 12 24 chr5 16485748 16486609 -186598923 + L1PA11 LINE L1 5363 6213 0 22 35 0 0 chr5 16486616 16486645 -186598887 + AT_rich Low_complexity Low_complexity 1 29 0 657 333 46 11 chr5 16486649 16487021 -186598511 - MLT1I LTR MaLR -10 399 15 207 0 0 0 chr5 16487812 16487835 -186597697 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 312 155 0 0 chr5 16487865 16487936 -186597596 + CT-rich Low_complexity Low_complexity 2 72 0 740 223 28 107 chr5 16487989 16488247 -186597285 + L1M4c LINE L1 1371 1648 -4735 2602 105 0 21 chr5 16488247 16488619 -186596913 - THE1B LTR MaLR 0 364 1 740 223 28 107 chr5 16488619 16488716 -186596816 + L1M4c LINE L1 1648 2100 -4283 3982 233 41 11 chr5 16488851 16490039 -186595493 + L1 LINE L1 4110 5333 -813 1115 279 16 32 chr5 16490041 16490480 -186595052 + L1 LINE L1 1621 2063 -5146 * 3394 183 77 8 chr5 16490479 16491268 -186594264 + L1 LINE L1 5072 5915 -1293 1912 87 48 84 chr5 16492198 16492507 -186593025 - AluSx SINE Alu -14 298 1 21 57 0 0 chr5 16492639 16492674 -186592858 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr5 16492807 16492828 -186592704 + AT_rich Low_complexity Low_complexity 1 21 0 934 241 4 13 chr5 16493188 16493425 -186592107 + L1PA16 LINE L1 1361 1595 -5254 6948 221 40 12 chr5 16493431 16494611 -186590921 + L1PA16 LINE L1 1731 2877 -3972 2381 91 3 0 chr5 16494611 16494918 -186590614 + AluY SINE Alu 1 308 -3 6948 221 40 12 chr5 16494918 16496718 -186588814 + L1PA16 LINE L1 2877 4804 -2045 497 250 14 0 chr5 16496719 16496863 -186588669 + L1 LINE L1 4868 5013 -1836 1499 155 99 40 chr5 16496863 16497217 -186588315 + THE1C LTR MaLR 1 375 0 9494 131 16 37 chr5 16497219 16498832 -186586700 + THE1C-int LTR MaLR 3 1580 0 792 174 85 57 chr5 16498832 16499044 -186586488 + THE1C LTR MaLR 1 218 -146 4230 162 53 30 chr5 16499044 16499453 -186586079 + L1PA16 LINE L1 5530 5928 -941 2398 140 57 2 chr5 16499453 16499859 -186585673 - MSTA LTR MaLR 0 428 1 4230 162 53 30 chr5 16499859 16500768 -186584764 + L1PA16 LINE L1 5928 6869 0 832 274 93 17 chr5 16501727 16502147 -186583385 + HsTC2 DNA Tc2 40 491 -1407 409 206 58 26 chr5 16502217 16502372 -186583160 + HsTC2 DNA Tc2 1741 1900 0 478 234 72 9 chr5 16504245 16504356 -186581176 + MER5C DNA MER1_type 2 119 -205 200 233 183 0 chr5 16504475 16504535 -186580997 + MER5C DNA MER1_type 247 317 -7 189 0 0 0 chr5 16505136 16505157 -186580375 + (CA)n Simple_repeat Simple_repeat 1 21 0 282 116 0 0 chr5 16505211 16505254 -186580278 + (CA)n Simple_repeat Simple_repeat 1 43 0 201 121 0 0 chr5 16505310 16505343 -186580189 + (CA)n Simple_repeat Simple_repeat 1 33 0 204 97 0 0 chr5 16505415 16505446 -186580086 + (CA)n Simple_repeat Simple_repeat 1 31 0 468 314 103 0 chr5 16505699 16505874 -186579658 + MIR SINE MIR 40 232 -30 200 35 35 0 chr5 16506396 16506425 -186579107 + (GA)n Simple_repeat Simple_repeat 2 31 0 1701 166 51 7 chr5 16507030 16507325 -186578207 - AluJb SINE Alu -4 308 1 1530 195 35 27 chr5 16507744 16507924 -186577608 + L1MB8 LINE L1 5462 5639 -527 2161 130 18 50 chr5 16507924 16508323 -186577209 + MLT1B LTR MaLR 5 390 0 1530 195 35 27 chr5 16508323 16508695 -186576837 + L1MB8 LINE L1 5639 6121 -45 699 86 0 0 chr5 16508732 16508825 -186576707 - AluS SINE Alu -212 101 9 1352 134 19 0 chr5 16508825 16509034 -186576498 + AluSg/x SINE Alu 97 309 -3 235 372 28 0 chr5 16511820 16511953 -186573579 - MIR3 SINE MIR -15 193 53 2670 178 46 48 chr5 16512036 16512055 -186573477 + L1MC3 LINE L1 6603 6621 -1164 449 141 26 0 chr5 16512055 16512133 -186573399 + MADE1 DNA Mariner 1 80 0 2670 178 46 48 chr5 16512133 16512827 -186572705 + L1MC3 LINE L1 6621 7315 -470 461 296 0 40 chr5 16512828 16512980 -186572552 + MLT1G1 LTR MaLR 167 312 -283 593 219 18 43 chr5 16513000 16513164 -186572368 - MLT1G1 LTR MaLR -435 160 1 522 325 181 42 chr5 16513164 16514079 -186571453 - L2 LINE L2 -1568 1746 704 276 239 86 129 chr5 16514880 16515135 -186570397 - L2 LINE L2 -57 3256 3013 722 250 128 76 chr5 16515574 16516106 -186569426 - MLT1F1 LTR MaLR -4 563 10 2286 128 5 16 chr5 16517746 16518114 -186567418 - THE1B LTR MaLR 0 364 1 1367 159 29 40 chr5 16518114 16518391 -186567141 - MER50 LTR ERV1 -28 706 433 1237 129 36 18 chr5 16518385 16518610 -186566922 - MER50 LTR ERV1 -505 229 1 * 386 244 79 55 chr5 16518697 16518861 -186566671 - MLT1H LTR MaLR 0 549 382 744 212 139 124 chr5 16518901 16519377 -186566155 + MER21B LTR ERV1 9 491 -372 3586 275 35 53 chr5 16519399 16521476 -186564056 + L1M4c LINE L1 48 1976 -5192 1921 163 78 3 chr5 16521787 16522148 -186563384 + MLT1B LTR MaLR 1 388 -2 1199 94 49 67 chr5 16522242 16522466 -186563066 + MER50 LTR ERV1 1 220 -514 1517 272 103 28 chr5 16522592 16523156 -186562376 - L2 LINE L2 -802 2512 1895 213 39 0 0 chr5 16523156 16523182 -186562350 + (ATG)n Simple_repeat Simple_repeat 3 28 0 1517 272 103 28 chr5 16523182 16523250 -186562282 - L2 LINE L2 -1419 1895 1833 354 298 33 13 chr5 16523326 16523477 -186562055 - L2 LINE L2 -2241 1073 920 377 197 0 0 chr5 16523482 16523553 -186561979 - MLT1A2 LTR MaLR -2 372 302 1734 194 38 29 chr5 16523553 16524101 -186561431 + MLT2A2 LTR ERVL 1 554 0 1078 103 62 36 chr5 16524217 16524411 -186561121 + MER50 LTR ERV1 22 220 -514 1428 124 3 78 chr5 16524413 16524695 -186560837 + MER50 LTR ERV1 437 697 -37 1144 266 43 26 chr5 16525480 16525901 -186559631 - LTR16A LTR ERVL -9 441 14 258 353 37 20 chr5 16526368 16526668 -186558864 - HERV16 LTR ERVL -764 5000 4696 1261 365 51 29 chr5 16526761 16528297 -186557235 - HERV16 LTR ERVL -1206 4558 2988 41122 30 22 1 chr5 16528542 16534571 -186550961 + L1HS LINE L1 1 6154 -1 306 292 110 38 chr5 16534574 16534783 -186550749 + L1M4c LINE L1 3006 3229 -3940 1971 296 69 36 chr5 16534975 16536034 -186549498 - HERV16 LTR ERVL -3710 1286 193 263 301 69 45 chr5 16536081 16536333 -186549199 - LTR16A LTR ERVL -139 311 61 22 35 0 0 chr5 16536674 16536703 -186548829 + AT_rich Low_complexity Low_complexity 1 29 0 241 356 69 20 chr5 16536928 16537029 -186548503 + L2 LINE L2 3161 3266 -6 572 244 199 42 chr5 16537522 16537878 -186547654 + MLT1J LTR MaLR 53 464 -47 1625 223 61 51 chr5 16538779 16539286 -186546246 - LTR40a LTR ERVL -7 512 1 2321 56 0 11 chr5 16539330 16539701 -186545831 + AluY SINE Alu 1 368 0 727 204 50 0 chr5 16539701 16539882 -186545650 + MER3 DNA MER1_type 19 208 -1 1614 215 33 62 chr5 16540196 16540716 -186544816 - MLT1D LTR MaLR 0 505 1 754 328 67 51 chr5 16540771 16541303 -186544229 - L2 LINE L2 -82 3231 2709 1896 155 0 13 chr5 16541303 16541607 -186543925 - AluSx SINE Alu -7 305 6 754 328 67 51 chr5 16541607 16542060 -186543472 - L2 LINE L2 -604 2709 2210 300 53 0 0 chr5 16542060 16542098 -186543434 + (TA)n Simple_repeat Simple_repeat 2 39 0 754 328 67 51 chr5 16542098 16542276 -186543256 - L2 LINE L2 -1103 2210 2036 1548 129 14 7 chr5 16542276 16542555 -186542977 + L1MA7 LINE L1 6011 6291 0 3777 170 7 3 chr5 16542560 16543279 -186542253 - L1PA15 LINE L1 -2026 4120 3399 5440 162 20 11 chr5 16543281 16543768 -186541764 + L1PA15 LINE L1 4153 4634 -1531 1598 188 67 0 chr5 16543768 16544050 -186541482 + AluSx SINE Alu 1 301 -11 5440 162 20 11 chr5 16544050 16545431 -186540101 + L1PA15 LINE L1 4634 6034 -131 1824 126 22 7 chr5 16545435 16545706 -186539826 + AluSx SINE Alu 1 275 -37 417 103 0 15 chr5 16545706 16545774 -186539758 + L1PA15 LINE L1 6092 6158 -7 216 216 0 0 chr5 16545898 16545949 -186539583 + (TA)n Simple_repeat Simple_repeat 1 51 0 717 308 152 38 chr5 16545966 16546551 -186538981 - L2 LINE L2 -1268 2046 1395 457 298 62 19 chr5 16546894 16547055 -186538477 - MIR SINE MIR -74 188 21 1889 155 15 48 chr5 16549031 16549339 -186536193 - MLT1B LTR MaLR 0 390 96 2140 109 0 0 chr5 16549339 16549623 -186535909 + AluSg SINE Alu 7 290 -20 1889 155 15 48 chr5 16549623 16549708 -186535824 - MLT1B LTR MaLR -294 96 10 3430 25 5 0 chr5 16549712 16550113 -186535419 + L1PA3 LINE L1 5743 6145 -10 188 308 154 0 chr5 16550385 16550502 -186535030 - L2 LINE L2 -242 3030 2896 25 0 0 0 chr5 16551552 16551577 -186533955 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr5 16551793 16551821 -186533711 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr5 16552760 16552802 -186532730 + AT_rich Low_complexity Low_complexity 1 42 0 182 171 98 0 chr5 16552994 16553035 -186532497 - L2 LINE L2 -5 3267 3223 25 65 0 0 chr5 16553826 16553872 -186531660 + AT_rich Low_complexity Low_complexity 1 46 0 208 182 15 45 chr5 16554060 16554126 -186531406 + A-rich Low_complexity Low_complexity 1 64 0 218 240 219 0 chr5 16555043 16555139 -186530393 - MIR SINE MIR -24 238 122 331 319 83 13 chr5 16555418 16555607 -186529925 + MIR SINE MIR 13 214 -48 338 265 0 13 chr5 16556431 16556582 -186528950 + (CATATA)n Simple_repeat Simple_repeat 6 154 0 32 0 0 0 chr5 16556798 16556830 -186528702 + AT_rich Low_complexity Low_complexity 1 32 0 1338 41 18 0 chr5 16558412 16558581 -186526951 + L1PA4 LINE L1 5984 6155 0 1581 292 143 8 chr5 16558666 16559434 -186526098 + L2 LINE L2 35 906 -2408 766 149 6 48 chr5 16559450 16559482 -186526050 + MLT1A2 LTR MaLR 2 34 -340 2367 137 18 0 chr5 16559482 16559868 -186525664 - L1PA11 LINE L1 -5 6169 5777 766 149 6 48 chr5 16559868 16560003 -186525529 + MLT1A2 LTR MaLR 34 162 -212 339 25 0 0 chr5 16560021 16560061 -186525471 + (TC)n Simple_repeat Simple_repeat 2 41 0 234 0 0 0 chr5 16560938 16560964 -186524568 + (A)n Simple_repeat Simple_repeat 1 26 0 306 73 0 0 chr5 16561114 16561155 -186524377 + (TG)n Simple_repeat Simple_repeat 1 41 0 196 231 83 37 chr5 16561367 16561475 -186524057 + L2 LINE L2 2975 3087 -226 1327 220 52 65 chr5 16561481 16561945 -186523587 + MLT2C2 LTR ERVL 7 464 0 287 159 0 0 chr5 16562214 16562272 -186523260 + MLT2C1 LTR ERVL 350 397 0 499 288 35 53 chr5 16562435 16562661 -186522871 - MIR SINE MIR -36 226 5 215 171 0 0 chr5 16564666 16564701 -186520831 + L3 LINE CR1 932 966 -611 407 284 32 13 chr5 16564938 16565093 -186520439 + MER90 LTR ERV1 404 561 -14 425 257 151 0 chr5 16565155 16565307 -186520225 - MER5A DNA MER1_type -6 183 9 189 336 217 14 chr5 16565323 16565466 -186520066 + MER5B DNA MER1_type 1 172 -6 404 308 60 33 chr5 16567629 16567928 -186517604 + L1ME4a LINE L1 5078 5384 -762 607 317 35 16 chr5 16568013 16568385 -186517147 + L1ME4a LINE L1 5483 5861 -260 729 197 58 24 chr5 16568887 16569174 -186516358 - MLT1A2 LTR MaLR -1 373 43 1718 172 35 3 chr5 16569272 16569557 -186515975 + AluJb SINE Alu 1 294 -18 342 0 0 0 chr5 16569564 16569602 -186515930 + (TA)n Simple_repeat Simple_repeat 2 39 0 206 317 79 10 chr5 16570315 16570416 -186515116 + MIR SINE MIR 42 149 -59 344 214 0 24 chr5 16570455 16570539 -186514993 + L1ME4a LINE L1 5960 6041 -80 24 67 0 0 chr5 16570654 16570699 -186514833 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr5 16570859 16570880 -186514652 + AT_rich Low_complexity Low_complexity 1 21 0 1622 194 56 31 chr5 16571306 16571662 -186513870 + MLT1A1 LTR MaLR 1 365 0 2087 178 34 15 chr5 16571974 16572370 -186513162 - L1MA8 LINE L1 0 6291 5904 2601 145 9 23 chr5 16572370 16572804 -186512728 + MSTC LTR MaLR 1 428 0 2087 178 34 15 chr5 16572804 16572861 -186512671 - L1MA8 LINE L1 -387 5904 5826 216 0 0 0 chr5 16572861 16572885 -186512647 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2087 178 34 15 chr5 16572885 16572896 -186512636 - L1MA8 LINE L1 -465 5826 5817 * 5277 141 23 18 chr5 16572890 16573572 -186511960 - L1PA15 LINE L1 -5 6811 6134 2192 112 36 7 chr5 16573572 16573876 -186511656 - AluSq SINE Alu 0 313 1 5277 141 23 18 chr5 16573876 16575183 -186510349 - L1PA15 LINE L1 -682 6134 4829 5638 217 11 60 chr5 16575194 16576263 -186509269 - L1PA15 LINE L1 -3078 3719 2599 2282 87 3 0 chr5 16576263 16576550 -186508982 + AluY SINE Alu 1 288 -23 5638 217 11 60 chr5 16576550 16577984 -186507548 - L1PA15 LINE L1 -4198 2599 1332 2111 291 19 26 chr5 16578061 16578790 -186506742 - L1PA15 LINE L1 -6063 724 1 9852 174 24 66 chr5 16578806 16579314 -186506218 - L1MA8 LINE L1 -478 5822 5294 2468 104 14 14 chr5 16579314 16579669 -186505863 - THE1A LTR MaLR 0 355 1 9852 174 24 66 chr5 16579669 16581464 -186504068 - L1MA8 LINE L1 -1006 5294 3518 1188 65 19 0 chr5 16581464 16581662 -186503870 - AluY SINE Alu 0 327 127 9852 174 24 66 chr5 16581662 16582263 -186503269 - L1MA8 LINE L1 -2782 3518 2893 2115 212 38 26 chr5 16582264 16582844 -186502688 + MER49 LTR ERV1 180 766 -157 680 255 0 5 chr5 16582983 16583167 -186502365 - L1MA8 LINE L1 -3251 2895 2713 1044 230 119 28 chr5 16583384 16583565 -186501967 + MSTD LTR MaLR 1 164 -232 2009 130 29 35 chr5 16583565 16583941 -186501591 - THE1C LTR MaLR 0 375 2 1044 230 119 28 chr5 16583941 16584120 -186501412 + MSTD LTR MaLR 164 394 -2 6404 228 62 35 chr5 16584122 16585694 -186499838 + MSTD-int LTR MaLR 2 1623 -112 2310 98 0 7 chr5 16585694 16586001 -186499531 - AluSq SINE Alu -8 305 1 6404 228 62 35 chr5 16586001 16586118 -186499414 + MSTD-int LTR MaLR 1623 1735 0 910 210 55 53 chr5 16586118 16586460 -186499072 + MLT1A1 LTR MaLR 1 429 -3 280 319 203 12 chr5 16587020 16587183 -186498349 + MIR SINE MIR 37 230 -32 931 234 152 34 chr5 16587537 16588155 -186497377 + LTR50 LTR ERVL 4 791 -4 334 197 0 0 chr5 16588231 16588292 -186497240 - MER81 DNA DNA -1 113 53 1305 176 119 62 chr5 16588557 16588926 -186496606 - MLT1B LTR MaLR 0 390 1 26 0 0 0 chr5 16588979 16589005 -186496527 + AT_rich Low_complexity Low_complexity 1 26 0 216 125 0 0 chr5 16590748 16590780 -186494752 + L2 LINE L2 3240 3271 -1 3153 77 31 4 chr5 16591011 16591465 -186494067 - MER41A LTR ERV1 0 554 89 2121 244 31 4 chr5 16591568 16592078 -186493454 + MLT-int LTR MaLR 1050 1625 -110 2466 79 0 6 chr5 16592079 16592394 -186493138 - AluSq SINE Alu 0 313 1 1576 123 68 0 chr5 16592797 16593033 -186492499 - AluSx SINE Alu -18 294 43 1517 188 21 3 chr5 16594193 16594518 -186491014 + L1MB3 LINE L1 5851 6181 -2 2432 111 28 8 chr5 16594624 16595096 -186490436 + MER1A DNA MER1_type 2 529 0 228 274 53 32 chr5 16595371 16595466 -186490066 - L3 LINE CR1 -3 1574 1478 2340 114 14 3 chr5 16598216 16598567 -186486965 - THE1A LTR MaLR 0 355 1 198 182 30 121 chr5 16599550 16599616 -186485916 - L2 LINE L2 -1 3312 3253 305 314 126 42 chr5 16599757 16600018 -186485514 - L2 LINE L2 -182 3090 2808 329 265 112 39 chr5 16600865 16601064 -186484468 - MIR SINE MIR -46 216 2 897 135 11 17 chr5 16601384 16601562 -186483970 + CT-rich Low_complexity Low_complexity 4 180 0 190 303 71 30 chr5 16604056 16604155 -186481377 + MER5B DNA MER1_type 31 133 -45 281 316 53 23 chr5 16604351 16604484 -186481048 - MIR3 SINE MIR -51 157 21 457 124 41 28 chr5 16604484 16604629 -186480903 + (TCTA)n Simple_repeat Simple_repeat 3 149 0 385 296 228 29 chr5 16605459 16606051 -186479481 + L2 LINE L2 2157 2866 -448 187 283 22 0 chr5 16606166 16606212 -186479320 + L2 LINE L2 3015 3061 -252 801 201 41 55 chr5 16609297 16609516 -186476016 + MER20 DNA MER1_type 3 218 -1 808 59 0 0 chr5 16610666 16610768 -186474764 + AluY SINE Alu 206 307 -4 463 336 7 7 chr5 16611274 16611420 -186474112 + MIR3 SINE MIR 27 172 -36 1927 140 70 22 chr5 16611528 16611886 -186473646 - THE1C LTR MaLR 0 375 1 226 324 65 14 chr5 16612417 16612556 -186472976 + L2 LINE L2 1714 1859 -1455 2237 115 0 3 chr5 16612583 16612888 -186472644 + AluSx SINE Alu 1 304 -8 923 247 57 22 chr5 16614366 16614735 -186470797 - L1ME3 LINE L1 0 6162 5781 1539 204 45 47 chr5 16614741 16615163 -186470369 + MER63B DNA MER1_type 6 426 -10 785 258 155 15 chr5 16615176 16615871 -186469661 - L1ME3 LINE L1 -383 5787 5004 1201 101 9 85 chr5 16618488 16618804 -186466728 - AluY SINE Alu -19 292 1 532 291 59 25 chr5 16619639 16619842 -186465690 - MIR SINE MIR 0 262 53 31 0 0 0 chr5 16619872 16619903 -186465629 + AT_rich Low_complexity Low_complexity 1 31 0 556 246 126 6 chr5 16620739 16620922 -186464610 + MER58C DNA MER1_type 9 213 -2 216 0 0 0 chr5 16621600 16621624 -186463908 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1785 150 34 0 chr5 16621624 16621891 -186463641 - AluJb SINE Alu -32 280 5 235 257 0 40 chr5 16622027 16622101 -186463431 + MER69 DNA AcHobo 2456 2526 0 1039 165 30 9 chr5 16622359 16622589 -186462943 - L1PA13 LINE L1 -790 5356 5122 5529 94 5 4 chr5 16622595 16623420 -186462112 + L1PA13 LINE L1 5338 6163 0 304 239 54 15 chr5 16624708 16624838 -186460694 - L1ME4a LINE L1 -246 5875 5741 2083 117 4 4 chr5 16625115 16625396 -186460136 + AluSp SINE Alu 1 281 -32 635 60 0 0 chr5 16625839 16625923 -186459609 + L1PA4 LINE L1 6069 6152 -3 1640 115 70 25 chr5 16627231 16627545 -186457987 - MER46B DNA MER2_type -1 235 33 1620 179 50 52 chr5 16628016 16628436 -186457096 + LTR52 LTR ERVL 1 419 -2 222 195 0 0 chr5 16628490 16628531 -186457001 + CT-rich Low_complexity Low_complexity 4 44 0 21 57 0 0 chr5 16628657 16628692 -186456840 + AT_rich Low_complexity Low_complexity 1 35 0 211 292 0 0 chr5 16629851 16629899 -186455633 + polypyrimidine Low_complexity Low_complexity 6 53 0 226 278 19 0 chr5 16629926 16629980 -186455552 - L3 LINE CR1 -4 1573 1519 204 97 0 0 chr5 16630409 16630440 -186455092 + (CAA)n Simple_repeat Simple_repeat 3 33 0 10136 35 7 0 chr5 16631049 16633057 -186452475 + L1PA5 LINE L1 4128 6146 -8 21 57 0 0 chr5 16634083 16634118 -186451414 + AT_rich Low_complexity Low_complexity 1 35 0 6471 109 23 21 chr5 16635316 16636623 -186448909 - L1MA5A LINE L1 0 6297 4993 287 96 19 0 chr5 16636725 16636777 -186448755 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 319 311 110 26 chr5 16637963 16638183 -186447349 - MIR SINE MIR -11 251 16 852 271 121 31 chr5 16638912 16639293 -186446239 - L2 LINE L2 0 3313 2898 503 200 350 0 chr5 16639293 16639433 -186446099 + MER5A DNA MER1_type 1 189 0 1907 252 96 17 chr5 16639445 16640081 -186445451 - L2 LINE L2 -426 2888 2203 2102 137 16 26 chr5 16640394 16640773 -186444759 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr5 16641692 16641720 -186443812 + AT_rich Low_complexity Low_complexity 1 28 0 2002 148 0 16 chr5 16641856 16642173 -186443359 - AluSx SINE Alu 0 312 1 986 114 8 0 chr5 16642178 16642310 -186443222 - AluSq/x SINE Alu -179 133 1 1959 96 0 99 chr5 16643226 16643548 -186441984 + AluSq SINE Alu 1 290 -23 24 0 0 0 chr5 16643848 16643872 -186441660 + AT_rich Low_complexity Low_complexity 1 24 0 507 304 54 87 chr5 16644974 16645422 -186440110 - L2 LINE L2 -13 3300 2868 1473 186 29 43 chr5 16645599 16645971 -186439561 - MLT1A2 LTR MaLR -4 622 1 216 238 0 0 chr5 16646190 16646253 -186439279 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 394 308 178 0 chr5 16646708 16646877 -186438655 + MIR SINE MIR 63 261 -1 1314 188 19 58 chr5 16647131 16647286 -186438246 + MLT1A1 LTR MaLR 1 160 -205 2181 100 3 10 chr5 16647286 16647577 -186437955 + AluSx SINE Alu 3 291 -21 1314 188 19 58 chr5 16647577 16647783 -186437749 + MLT1A1 LTR MaLR 160 348 -17 1630 192 49 3 chr5 16647814 16648101 -186437431 - AluJo SINE Alu -12 300 1 222 195 39 65 chr5 16648130 16648207 -186437325 + MIR3 SINE MIR 130 204 -4 2157 97 13 13 chr5 16648949 16649247 -186436285 + AluSp SINE Alu 1 298 -15 2046 80 0 0 chr5 16649250 16649523 -186436009 + AluY SINE Alu 32 304 0 227 325 197 21 chr5 16649998 16650186 -186435346 - MIR SINE MIR -12 250 30 23 0 0 0 chr5 16650368 16650391 -186435141 + AT_rich Low_complexity Low_complexity 1 23 0 221 265 0 0 chr5 16650905 16650954 -186434578 + CT-rich Low_complexity Low_complexity 3 51 0 181 345 12 12 chr5 16651840 16651924 -186433608 - L2 LINE L2 -1 3271 3188 22 0 0 0 chr5 16652153 16652175 -186433357 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr5 16652479 16652528 -186433004 + AT_rich Low_complexity Low_complexity 1 49 0 258 311 126 38 chr5 16653541 16653724 -186431808 + L2 LINE L2 2606 2804 -510 2101 122 7 0 chr5 16654001 16654289 -186431243 + AluSg SINE Alu 1 290 -20 386 307 36 115 chr5 16654512 16654955 -186430577 + L2 LINE L2 2865 3272 0 2667 129 55 0 chr5 16654969 16655371 -186430161 - MSTB LTR MaLR -2 424 1 2211 147 39 0 chr5 16655371 16655760 -186429772 - MSTB-int LTR MaLR 0 1651 1248 1220 228 54 0 chr5 16656109 16656407 -186429125 + MER58B DNA MER1_type 1 314 -27 1491 171 87 7 chr5 16659281 16659567 -186425965 + AluJb SINE Alu 3 311 -1 633 282 89 4 chr5 16660088 16660336 -186425196 - HAL1 LINE L1 -1814 693 425 309 181 14 28 chr5 16660341 16660413 -186425119 - HAL1 LINE L1 -2234 273 203 483 282 20 0 chr5 16660426 16660575 -186424957 - HAL1 LINE L1 -2355 152 1 289 267 118 30 chr5 16661594 16661729 -186423803 + MIR3 SINE MIR 21 167 -41 26 30 0 0 chr5 16661912 16661945 -186423587 + AT_rich Low_complexity Low_complexity 1 33 0 1198 158 48 0 chr5 16663960 16664169 -186421363 - MER20 DNA MER1_type 0 219 1 316 265 29 0 chr5 16664773 16664875 -186420657 + (TCTCTG)n Simple_repeat Simple_repeat 1 105 0 2342 126 11 0 chr5 16666103 16666467 -186419065 - L1PB1 LINE L1 -2 6149 5782 327 241 23 23 chr5 16666467 16666554 -186418978 - L1MC4 LINE L1 -1340 6702 6616 310 287 0 21 chr5 16666479 16666573 -186418959 + L1MC4 LINE L1 6615 6706 -1336 * 348 248 0 0 chr5 16666575 16666724 -186418808 + (TA)n Simple_repeat Simple_repeat 1 149 0 325 214 0 82 chr5 16666734 16666832 -186418700 - L1MC4 LINE L1 -1339 6703 6614 9007 187 25 13 chr5 16666854 16669545 -186415987 - L1P5 LINE L1 -369 6498 3774 1787 183 87 3 chr5 16669554 16670160 -186415372 - L1P5 LINE L1 -5162 1701 901 797 279 8 0 chr5 16670159 16670421 -186415111 - L1P5 LINE L1 -6593 270 7 * 239 57 0 0 chr5 16670492 16670527 -186415005 - L1MA1 LINE L1 -120 6182 6148 40 21 0 0 chr5 16670538 16670585 -186414947 + AT_rich Low_complexity Low_complexity 1 47 0 292 210 0 32 chr5 16671086 16671148 -186414384 + L2 LINE L2 3254 3313 0 207 139 0 0 chr5 16671446 16671482 -186414050 + (T)n Simple_repeat Simple_repeat 1 36 0 418 313 30 8 chr5 16672066 16672197 -186413335 - MIR SINE MIR -104 158 25 3629 155 32 60 chr5 16672289 16673095 -186412437 - LTR1 LTR ERV1 -1 784 1 1255 208 46 74 chr5 16673895 16674356 -186411176 - MLT1C LTR MaLR -16 451 4 2033 131 25 68 chr5 16674471 16674660 -186410872 - L1MA8 LINE L1 -2 6289 6093 2257 87 3 10 chr5 16674660 16674959 -186410573 + AluY SINE Alu 1 297 -14 2033 131 25 68 chr5 16674959 16675213 -186410319 - L1MA8 LINE L1 -198 6093 5865 250 272 22 22 chr5 16676025 16676117 -186409415 - MLT1J1 LTR MaLR -289 157 66 365 307 58 117 chr5 16676297 16676476 -186409056 - L2 LINE L2 -2480 834 646 798 255 57 9 chr5 16676476 16676688 -186408844 + MIR SINE MIR 7 228 -34 365 307 58 117 chr5 16676688 16676932 -186408600 - L2 LINE L2 -2668 646 237 188 302 56 71 chr5 16677174 16677300 -186408232 + L2 LINE L2 2380 2503 -811 2235 116 0 7 chr5 16680235 16680536 -186404996 - AluSg SINE Alu -11 299 1 427 358 116 20 chr5 16680542 16680844 -186404688 - L2 LINE L2 0 3272 2942 328 326 57 14 chr5 16680856 16680997 -186404535 - L2 LINE L2 -6 3307 3161 2919 208 40 3 chr5 16681005 16681626 -186403906 - MER82 DNA MER2_type -8 645 2 1676 211 47 23 chr5 16681685 16682069 -186403463 - MSTD LTR MaLR 0 396 4 206 220 17 51 chr5 16682582 16682641 -186402891 + L2 LINE L2 3255 3311 -2 399 183 0 0 chr5 16684077 16684159 -186401373 + (TG)n Simple_repeat Simple_repeat 1 82 0 588 302 53 26 chr5 16684199 16684388 -186401144 - MIR SINE MIR -18 244 51 479 270 60 30 chr5 16684885 16685085 -186400447 + MIR SINE MIR 3 208 -54 915 196 37 28 chr5 16686216 16686430 -186399102 - MER20 DNA MER1_type -1 218 3 619 205 60 7 chr5 16686947 16687098 -186398434 + MER69A DNA AcHobo 19 177 0 23 78 0 0 chr5 16688568 16688619 -186396913 + AT_rich Low_complexity Low_complexity 1 51 0 309 314 57 0 chr5 16688650 16688755 -186396777 + L1ME LINE L1 5513 5623 -498 292 284 52 52 chr5 16690105 16690221 -186395311 - L2 LINE L2 0 3272 3157 1756 131 57 41 chr5 16690271 16690638 -186394894 - THE1C LTR MaLR 0 375 3 9049 131 47 36 chr5 16690640 16692201 -186393331 - THE1C-int LTR MaLR 0 1580 3 1396 142 112 30 chr5 16692205 16692547 -186392985 - THE1C LTR MaLR -2 426 1 533 165 23 23 chr5 16692761 16692894 -186392638 - L1MA7 LINE L1 -3 6288 6156 894 154 0 0 chr5 16692909 16693071 -186392461 - L1MA6 LINE L1 -5 6295 6134 225 313 72 0 chr5 16693485 16693568 -186391964 - L2 LINE L2 -229 3084 2996 1775 82 50 14 chr5 16693993 16694274 -186391258 + L1MA3 LINE L1 6015 6305 0 457 292 46 29 chr5 16698093 16698305 -186387227 + MIR SINE MIR 2 218 -44 1871 168 31 11 chr5 16698433 16698791 -186386741 + MLT1A1 LTR MaLR 1 365 0 414 237 178 13 chr5 16699250 16699402 -186386130 + MER5B DNA MER1_type 2 178 0 1548 117 17 176 chr5 16699411 16699814 -186385718 + MER44D DNA MER2_type 1 609 0 436 296 66 13 chr5 16700147 16700299 -186385233 - MER5A DNA MER1_type 0 189 30 2039 235 87 17 chr5 16700314 16700833 -186384699 - L1M4c LINE L1 -3656 3301 2819 2171 186 104 8 chr5 16700833 16701302 -186384230 + MER67D LTR ERV1 1 514 0 2039 235 87 17 chr5 16701302 16701746 -186383786 - L1M4c LINE L1 -4138 2819 2321 409 224 0 0 chr5 16702158 16702234 -186383298 - MER2 DNA MER2_type -3 342 267 769 188 0 8 chr5 16702287 16702420 -186383112 - MER2 DNA MER2_type -213 132 1 1568 206 124 16 chr5 16702612 16703063 -186382469 - MLT1D LTR MaLR 0 505 6 414 39 0 0 chr5 16703211 16703263 -186382269 + (CAT)n Simple_repeat Simple_repeat 1 52 0 377 319 0 0 chr5 16703327 16703421 -186382111 + MER5A DNA MER1_type 12 105 -84 512 234 120 33 chr5 16703472 16703656 -186381876 - MIR SINE MIR -50 212 13 1285 190 16 71 chr5 16704500 16704514 -186381018 + AluJo SINE Alu 1 14 -298 2300 98 47 36 chr5 16704514 16704873 -186380659 - THE1B LTR MaLR 0 364 2 1285 190 16 71 chr5 16704873 16705168 -186380364 + AluJo SINE Alu 14 293 -19 297 267 103 26 chr5 16705403 16705519 -186380013 - MIR SINE MIR -70 192 68 2355 49 0 7 chr5 16706742 16707078 -186378454 - AluY SINE Alu 0 334 1 405 230 31 42 chr5 16707321 16707500 -186378032 - L1M4c LINE L1 -4563 2315 2136 1782 157 67 14 chr5 16707500 16707856 -186377676 + THE1C LTR MaLR 1 375 0 405 230 31 42 chr5 16707856 16707872 -186377660 - L1M4c LINE L1 -4742 2136 1721 332 213 0 54 chr5 16707879 16707994 -186377538 - L1M4c LINE L1 -5062 1895 1679 2186 197 22 9 chr5 16708000 16708180 -186377352 + MLT1C LTR MaLR 1 177 -290 3353 80 18 7 chr5 16708180 16708628 -186376904 + MLT2A2 LTR ERVL 1 453 0 2186 197 22 9 chr5 16708628 16708908 -186376624 + MLT1C LTR MaLR 177 467 0 446 158 55 24 chr5 16708914 16709041 -186376491 - L1M4c LINE L1 -5179 1680 1550 1377 111 0 18 chr5 16709041 16709266 -186376266 - L1PA13 LINE L1 0 6163 5943 2372 142 23 40 chr5 16709274 16709715 -186375817 + L1P4 LINE L1 4861 5297 -866 1987 42 23 8 chr5 16709715 16709956 -186375576 + L1PA4 LINE L1 5887 6152 -3 2372 142 23 40 chr5 16709956 16710258 -186375274 + L1P4 LINE L1 5297 5603 -560 1157 204 21 71 chr5 16710261 16710639 -186374893 - L1M4c LINE L1 -5296 1563 1205 513 288 33 66 chr5 16711252 16711526 -186374006 - L1M4c LINE L1 -5914 945 681 1536 298 58 12 chr5 16711527 16712118 -186373414 - L1M4c LINE L1 -6231 628 11 209 348 116 34 chr5 16712453 16712660 -186372872 - L2 LINE L2 -24 3248 3025 455 299 118 16 chr5 16713295 16713482 -186372050 - MIR SINE MIR -23 239 34 22 0 0 0 chr5 16714413 16714435 -186371097 + AT_rich Low_complexity Low_complexity 1 22 0 262 235 29 39 chr5 16715019 16715121 -186370411 + CT-rich Low_complexity Low_complexity 1 101 0 288 0 0 0 chr5 16715459 16715491 -186370041 + (TG)n Simple_repeat Simple_repeat 1 32 0 402 267 67 0 chr5 16716991 16717096 -186368436 + MIR SINE MIR 81 192 -70 1720 38 0 0 chr5 16717785 16717995 -186367537 - L1PA4 LINE L1 0 6155 5946 2035 216 29 86 chr5 16718146 16718771 -186366761 + MLT1E LTR MaLR 5 593 0 231 190 0 0 chr5 16719464 16719522 -186366010 + A-rich Low_complexity Low_complexity 1 58 0 43 0 0 0 chr5 16719548 16719591 -186365941 + AT_rich Low_complexity Low_complexity 1 43 0 399 281 33 0 chr5 16721002 16721123 -186364409 + MER90 LTR ERV1 451 575 0 1509 234 87 15 chr5 16721129 16721671 -186363861 - L1ME3A LINE L1 -85 6085 5505 446 313 8 8 chr5 16721672 16721803 -186363729 + MER5B DNA MER1_type 48 178 0 417 207 31 56 chr5 16722279 16722416 -186363116 - L1PA8A LINE L1 -636 5495 5367 2134 101 3 7 chr5 16722416 16722714 -186362818 - AluY SINE Alu -14 297 1 417 207 31 56 chr5 16722714 16722739 -186362793 - L1PA8A LINE L1 -764 5367 5343 216 298 0 0 chr5 16722781 16722828 -186362704 + MIR SINE MIR 48 94 -168 21 36 0 0 chr5 16722924 16722952 -186362580 + AT_rich Low_complexity Low_complexity 1 28 0 207 293 19 47 chr5 16723143 16723249 -186362283 - MIR SINE MIR -129 133 31 262 256 207 0 chr5 16723455 16723537 -186361995 - L2 LINE L2 -17 3255 3157 284 48 24 0 chr5 16723602 16723644 -186361888 + (TG)n Simple_repeat Simple_repeat 2 44 0 517 312 177 48 chr5 16724540 16725299 -186360233 + L2 LINE L2 1985 2870 -444 1925 164 0 10 chr5 16725299 16725597 -186359935 - AluSx SINE Alu -17 295 1 517 312 177 48 chr5 16725597 16725703 -186359829 + L2 LINE L2 2870 2961 -353 25 0 0 0 chr5 16726017 16726042 -186359490 + AT_rich Low_complexity Low_complexity 1 25 0 1022 247 30 13 chr5 16726864 16727099 -186358433 - MIR SINE MIR -1 261 23 2189 134 8 35 chr5 16727179 16727553 -186357979 - THE1B LTR MaLR 0 364 1 11454 92 17 3 chr5 16727553 16729110 -186356422 - THE1B-int LTR MaLR 0 1580 1 2177 133 8 37 chr5 16729110 16729485 -186356047 - THE1B LTR MaLR 0 364 1 350 317 49 75 chr5 16730183 16730448 -186355084 + MIR SINE MIR 5 262 0 234 265 0 0 chr5 16730611 16730660 -186354872 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 429 344 69 45 chr5 16730660 16730951 -186354581 - L2 LINE L2 -5 3267 2970 747 250 37 14 chr5 16731232 16731448 -186354084 + LTR16C LTR ERVL 271 491 0 469 236 172 6 chr5 16731499 16731656 -186353876 + MLT2E LTR ERVL 31 213 -415 621 219 7 7 chr5 16731737 16731888 -186353644 + MLT2E LTR ERVL 472 622 -6 573 289 124 30 chr5 16731926 16732127 -186353405 - MIR SINE MIR -18 244 25 2418 204 32 6 chr5 16732370 16732869 -186352663 + MLT2B1 LTR ERVL 1 512 -8 1986 157 31 9 chr5 16732898 16733248 -186352284 - THE1B LTR MaLR -2 362 5 297 344 60 33 chr5 16733250 16733433 -186352099 - MIR SINE MIR -53 209 22 405 271 69 78 chr5 16735334 16735552 -186349980 + MLT1J LTR MaLR 256 471 -40 904 298 127 26 chr5 16735581 16736081 -186349451 + L2 LINE L2 2764 3313 0 762 305 34 17 chr5 16737233 16737472 -186348060 + MIR SINE MIR 3 245 -17 2708 118 7 41 chr5 16738374 16738816 -186346716 - MSTA LTR MaLR -1 427 1 26 98 0 0 chr5 16738965 16739047 -186346485 + AT_rich Low_complexity Low_complexity 1 82 0 27 29 0 0 chr5 16739469 16739503 -186346029 + AT_rich Low_complexity Low_complexity 1 34 0 371 258 11 0 chr5 16740243 16740332 -186345200 + MIR SINE MIR 1 90 -172 1929 128 11 4 chr5 16741054 16741335 -186344197 + AluSx SINE Alu 3 285 -27 360 70 35 0 chr5 16742308 16742365 -186343167 - MADE1 DNA Mariner 0 80 22 2255 172 28 15 chr5 16743015 16743481 -186342051 - L1MA8 LINE L1 -5 6286 5815 1573 46 0 0 chr5 16743483 16743677 -186341855 + L1PA4 LINE L1 5962 6155 0 27 0 0 0 chr5 16743706 16743733 -186341799 + AT_rich Low_complexity Low_complexity 1 27 0 1586 138 11 0 chr5 16743737 16744012 -186341520 - L1MA8 LINE L1 -486 5805 5528 234 281 16 0 chr5 16744034 16744098 -186341434 + L2 LINE L2 2280 2344 -970 248 216 21 93 chr5 16744166 16744263 -186341269 + L2 LINE L2 3158 3247 -66 314 141 0 16 chr5 16744277 16744341 -186341191 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 212 83 0 28 chr5 16744642 16744678 -186340854 + (GAAA)n Simple_repeat Simple_repeat 3 37 0 21 0 0 0 chr5 16744730 16744751 -186340781 + AT_rich Low_complexity Low_complexity 1 21 0 2076 125 42 33 chr5 16744991 16745352 -186340180 - THE1B LTR MaLR 0 364 1 191 320 24 40 chr5 16745595 16745720 -186339812 - MER5A DNA MER1_type -4 185 63 21 36 0 0 chr5 16746231 16746259 -186339273 + AT_rich Low_complexity Low_complexity 1 28 0 375 185 0 0 chr5 16746333 16746398 -186339134 + Tigger2 DNA MER2_type 5 69 -2649 774 271 0 0 chr5 16746433 16746610 -186338922 - MER8 DNA MER2_type -62 177 1 248 68 0 23 chr5 16746611 16746655 -186338877 + (CA)n Simple_repeat Simple_repeat 2 44 0 891 270 102 47 chr5 16746723 16747215 -186338317 - LTR33A LTR ERVL -4 519 1 319 340 93 15 chr5 16747541 16747800 -186337732 + L2 LINE L2 1790 2068 -1246 4661 165 30 25 chr5 16747801 16749420 -186336112 - L1PA15 LINE L1 0 6165 4532 228 343 59 62 chr5 16749425 16749746 -186335786 + L2 LINE L2 2076 2395 -919 1881 180 8 8 chr5 16749853 16750214 -186335318 + MLT1A1 LTR MaLR 2 362 -3 290 278 56 0 chr5 16750263 16750335 -186335197 + L2 LINE L2 3151 3226 -46 2167 137 0 0 chr5 16750563 16750869 -186334663 - AluSx SINE Alu -6 306 1 2174 113 0 0 chr5 16751124 16751139 -186334393 - AluSc SINE Alu -17 292 278 207 0 0 0 chr5 16751139 16751162 -186334370 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2174 113 0 0 chr5 16751162 16751438 -186334094 - AluSc SINE Alu -30 279 1 1461 181 0 19 chr5 16751939 16752199 -186333333 - AluJo SINE Alu -16 296 42 3328 166 48 21 chr5 16752206 16752916 -186332616 - L1PB4 LINE L1 -1 6155 5427 1033 104 38 47 chr5 16753038 16753295 -186332237 - L1M LINE L1 -762 5384 5163 2088 181 36 90 chr5 16753318 16753904 -186331628 + MLT2B3 LTR ERVL 1 554 0 204 200 18 18 chr5 16756213 16756268 -186329264 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 3259 173 74 28 chr5 16757283 16758010 -186327522 - LTR48 LTR ERV1 0 787 27 374 354 38 14 chr5 16758800 16759012 -186326520 - L2 LINE L2 -554 2760 2544 200 209 0 0 chr5 16759016 16759059 -186326473 + (ACTAG)n Simple_repeat Simple_repeat 5 47 0 240 330 52 21 chr5 16759082 16759179 -186326353 - L2 LINE L2 -776 2538 2439 266 280 0 21 chr5 16759187 16759280 -186326252 - L2 LINE L2 -1296 2018 1928 211 353 0 14 chr5 16760012 16760098 -186325434 + MIR SINE MIR 77 162 -46 6884 121 14 16 chr5 16760353 16765992 -186319540 - L1PA8 LINE L1 -15 6472 768 853 116 0 0 chr5 16765985 16766106 -186319426 - L1PA8 LINE L1 -6330 131 11 * 1550 182 69 21 chr5 16766293 16766584 -186318948 - AluJb SINE Alu -7 305 1 2209 111 7 3 chr5 16767133 16767430 -186318102 + AluSx SINE Alu 1 298 -14 364 307 93 0 chr5 16767438 16767578 -186317954 + MIR3 SINE MIR 44 196 -12 183 374 24 0 chr5 16767887 16767970 -186317562 + MIR SINE MIR 2 86 -176 515 281 8 48 chr5 16770377 16770626 -186314906 - HAL1 LINE L1 -17 2490 2252 307 280 84 21 chr5 16770627 16770770 -186314762 - HAL1 LINE L1 -833 1674 1523 241 253 182 0 chr5 16770817 16770987 -186314545 - HAL1 LINE L1 -1058 1449 1249 5463 117 15 9 chr5 16771075 16771947 -186313585 - L1MA3 LINE L1 -8 6297 5421 3009 185 23 19 chr5 16771947 16772609 -186312923 - L1MB1 LINE L1 -240 5928 5260 1324 166 40 68 chr5 16773053 16773349 -186312183 - AluJb SINE Alu -7 305 18 657 191 77 10 chr5 16773659 16773868 -186311664 + MER69 DNA AcHobo 2294 2516 -10 262 408 0 0 chr5 16773892 16773995 -186311537 + L2 LINE L2 3145 3247 -25 189 317 8 98 chr5 16774243 16774289 -186311243 + MIR SINE MIR 110 159 -103 1657 170 60 7 chr5 16774289 16774571 -186310961 + AluJo SINE Alu 9 305 -7 189 317 8 98 chr5 16774571 16774647 -186310885 + MIR SINE MIR 159 221 -41 1996 118 50 68 chr5 16775094 16775476 -186310056 - THE1C LTR MaLR 0 375 1 210 71 0 0 chr5 16775777 16775805 -186309727 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr5 16775954 16775976 -186309556 + AT_rich Low_complexity Low_complexity 1 22 0 210 301 150 9 chr5 16776032 16776145 -186309387 - L2 LINE L2 0 3313 3185 1141 212 58 69 chr5 16777762 16778224 -186307308 - LTR16A1 LTR ERVL 0 457 1 412 271 42 42 chr5 16778723 16779066 -186306466 + MLT1J1 LTR MaLR 63 446 0 1045 269 37 50 chr5 16780553 16781095 -186304437 + L1MC5 LINE L1 5255 5789 -2019 644 261 55 100 chr5 16781729 16781897 -186303635 + L1MC5 LINE L1 6668 6842 -1119 1507 187 21 28 chr5 16781897 16782181 -186303351 + AluJb SINE Alu 5 286 -26 644 261 55 100 chr5 16782181 16782561 -186302971 + L1MC5 LINE L1 6842 7191 -770 622 272 24 70 chr5 16782740 16782928 -186302604 + L1MDa LINE L1 64 228 -6312 2323 101 48 31 chr5 16782928 16783286 -186302246 + THE1B LTR MaLR 1 364 0 622 272 24 70 chr5 16783286 16783468 -186302064 + L1MDa LINE L1 228 417 -6123 534 230 105 52 chr5 16783616 16783864 -186301668 - L1MC4a LINE L1 -1623 6185 5925 490 272 117 10 chr5 16784021 16784227 -186301305 - MIR SINE MIR -19 243 16 488 315 84 60 chr5 16786455 16786906 -186298626 + L2 LINE L2 2811 3272 0 1534 132 0 0 chr5 16787335 16787555 -186297977 + AluSg/x SINE Alu 83 302 -10 270 0 0 0 chr5 16787619 16787649 -186297883 + (TG)n Simple_repeat Simple_repeat 2 31 0 225 373 60 7 chr5 16789432 16789582 -186295950 + L2 LINE L2 3151 3308 -5 2318 110 0 0 chr5 16789910 16790211 -186295321 - AluSx SINE Alu -11 301 1 24 32 0 0 chr5 16790898 16790929 -186294603 + AT_rich Low_complexity Low_complexity 1 31 0 641 285 113 88 chr5 16791256 16792318 -186293214 + L1ME LINE L1 4479 5561 -560 577 62 62 0 chr5 16792374 16792495 -186293037 + L1PA5 LINE L1 6051 6176 0 1033 191 84 82 chr5 16792545 16792731 -186292801 - LTR52 LTR ERVL -6 415 231 1518 64 5 20 chr5 16792731 16792935 -186292597 + L1PA10 LINE L1 5964 6164 -4 1033 191 84 82 chr5 16792935 16793162 -186292370 - LTR52 LTR ERVL -190 231 1 362 255 9 19 chr5 16794123 16794229 -186291303 - MIR SINE MIR -127 135 31 2368 97 3 0 chr5 16794308 16794617 -186290915 - AluSx SINE Alu -2 310 1 1132 198 46 73 chr5 16794654 16795022 -186290510 - LTR47B LTR ERVL -85 358 1 364 170 27 125 chr5 16795073 16795185 -186290347 - L1PA16 LINE L1 -9 6157 6057 * 2917 200 3 2 chr5 16795182 16795817 -186289715 + L1 LINE L1 4394 5029 -1117 456 279 188 26 chr5 16797925 16798233 -186287299 + L2 LINE L2 2956 3313 0 25 0 0 0 chr5 16798581 16798606 -186286926 + AT_rich Low_complexity Low_complexity 1 25 0 1540 184 146 82 chr5 16799259 16799780 -186285752 - MLT2B3 LTR ERVL 0 554 1 3646 98 217 116 chr5 16799964 16801366 -186284166 - pTR5 LTR ERV1 0 2438 743 40 21 0 0 chr5 16801770 16801817 -186283715 + AT_rich Low_complexity Low_complexity 1 47 0 24 0 0 0 chr5 16803568 16803592 -186281940 + AT_rich Low_complexity Low_complexity 1 24 0 1906 140 31 0 chr5 16804368 16804660 -186280872 - AluSx SINE Alu -11 301 1 216 326 134 44 chr5 16808292 16808902 -186276630 + L2 LINE L2 1359 2023 -1291 285 337 43 43 chr5 16810695 16810781 -186274751 + MIR SINE MIR 51 139 -123 1700 161 67 78 chr5 16810781 16811217 -186274315 - MSTB1 LTR MaLR -1 431 1 285 337 43 43 chr5 16811217 16811293 -186274239 + MIR SINE MIR 138 213 -49 1398 256 62 22 chr5 16811299 16811848 -186273684 - MLT1F1 LTR MaLR 0 567 1 200 361 8 54 chr5 16812244 16812374 -186273158 - L2 LINE L2 -211 3061 2938 817 202 67 29 chr5 16812419 16812627 -186272905 + MER58A DNA MER1_type 9 224 0 1992 143 6 34 chr5 16813470 16813791 -186271741 - AluSx SINE Alu 0 312 1 2140 132 48 28 chr5 16814121 16814478 -186271054 - THE1B LTR MaLR 0 364 1 2014 189 18 73 chr5 16814529 16814856 -186270676 - L1MC3 LINE L1 0 7785 7504 2035 151 19 24 chr5 16814856 16815233 -186270299 - THE1C LTR MaLR 0 375 1 2014 189 18 73 chr5 16815233 16815504 -186270028 - L1MC3 LINE L1 -281 7504 7220 426 145 48 0 chr5 16815501 16815584 -186269948 - L1MC3 LINE L1 -781 7004 6918 * 225 116 0 0 chr5 16815599 16815642 -186269890 - LTR66 LTR ERVL -174 436 394 * 283 191 0 0 chr5 16815605 16815673 -186269859 + LTR66 LTR ERVL 395 462 -148 6672 196 54 14 chr5 16815673 16817614 -186267918 - L1MC3 LINE L1 -743 5403 4815 2197 75 0 3 chr5 16817626 16817921 -186267611 - L1PA10 LINE L1 -14 6154 5861 1541 130 0 0 chr5 16817921 16818159 -186267373 + L1P4 LINE L1 5479 5716 -452 * 2422 248 65 16 chr5 16818139 16819044 -186266488 - L1MC3 LINE L1 -1313 4833 3884 216 97 0 0 chr5 16819227 16819258 -186266274 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 267 54 0 0 chr5 16819748 16819785 -186265747 + (CA)n Simple_repeat Simple_repeat 2 38 0 2056 189 30 69 chr5 16821171 16821387 -186264145 + MLT1D LTR MaLR 1 224 -281 2003 172 12 10 chr5 16821387 16821788 -186263744 + L1MA4 LINE L1 5893 6294 -6 2056 189 30 69 chr5 16821788 16822096 -186263436 + MLT1D LTR MaLR 224 505 0 207 0 0 0 chr5 16823038 16823061 -186262471 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 2168 83 14 3 chr5 16823528 16823816 -186261716 + AluY SINE Alu 1 291 -20 1622 118 7 0 chr5 16824409 16824681 -186260851 - L1MA2 LINE L1 0 6304 6031 853 151 0 8 chr5 16824925 16825051 -186260481 - FLAM_C SINE Alu -18 125 1 709 108 0 17 chr5 16825110 16825230 -186260302 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 449 269 102 12 chr5 16826568 16826735 -186258797 - MLT1L LTR MaLR -4 611 430 704 276 6 0 chr5 16826970 16827126 -186258406 + MER5A DNA MER1_type 2 158 -31 1488 236 110 70 chr5 16828082 16828683 -186256849 - MLT1E1 LTR MaLR -29 625 1 1352 175 119 26 chr5 16829794 16830182 -186255350 + MLT1C LTR MaLR 44 467 0 25 0 0 0 chr5 16830716 16830741 -186254791 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr5 16831928 16831967 -186253565 + AT_rich Low_complexity Low_complexity 1 39 0 227 279 87 19 chr5 16832073 16832177 -186253355 - MIR SINE MIR -35 227 117 538 274 142 47 chr5 16832206 16832545 -186252987 - MLT1J2 LTR MaLR -8 442 72 27 0 0 0 chr5 16832701 16832728 -186252804 + AT_rich Low_complexity Low_complexity 1 27 0 346 295 0 19 chr5 16833476 16833581 -186251951 - L2 LINE L2 -8 3264 3162 684 245 77 10 chr5 16834681 16834889 -186250643 + MLT1G LTR MaLR 369 590 0 24 0 0 0 chr5 16835385 16835409 -186250123 + AT_rich Low_complexity Low_complexity 1 24 0 957 193 65 103 chr5 16835691 16836136 -186249396 - LTR8A LTR ERV1 -13 714 287 685 176 154 147 chr5 16836174 16836453 -186249079 - LTR8 LTR ERV1 -446 281 1 238 314 0 0 chr5 16837075 16837145 -186248387 + MLT1E1 LTR MaLR 1 70 -584 1051 233 101 3 chr5 16837262 16837550 -186247982 + MLT1E2 LTR MaLR 303 618 -8 2150 186 94 34 chr5 16838315 16838900 -186246632 + Cheshire DNA MER1_type 1782 2401 -19 420 276 120 100 chr5 16838924 16839414 -186246118 + L2 LINE L2 2811 3310 -3 1072 311 73 31 chr5 16840111 16840156 -186245376 - MER115 DNA AcHobo -28 665 623 1927 138 31 56 chr5 16840156 16840512 -186245020 - MER7A DNA MER2_type 0 346 2 1072 311 73 31 chr5 16840512 16840948 -186244584 - MER115 DNA AcHobo -70 623 164 780 179 50 0 chr5 16840947 16841113 -186244419 - MER58B DNA MER1_type -8 333 157 * 522 218 21 28 chr5 16841424 16841566 -186243966 - L2 LINE L2 -702 2612 2472 1789 216 39 28 chr5 16841608 16842070 -186243462 - MLT1C LTR MaLR 0 467 1 207 0 0 0 chr5 16842488 16842511 -186243021 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1036 168 0 6 chr5 16842924 16843091 -186242441 - AluJo SINE Alu -22 290 125 21 0 0 0 chr5 16844064 16844085 -186241447 + AT_rich Low_complexity Low_complexity 1 21 0 580 234 71 50 chr5 16844297 16844497 -186241035 - L1MDa LINE L1 -5764 776 449 1379 245 58 41 chr5 16844663 16845129 -186240403 - MLT1E2 LTR MaLR -2 624 151 667 275 66 30 chr5 16845408 16845713 -186239819 - MLT1J2 LTR MaLR -129 321 6 25 31 0 0 chr5 16846459 16846491 -186239041 + AT_rich Low_complexity Low_complexity 1 32 0 2374 83 0 13 chr5 16847596 16847896 -186237636 + AluY SINE Alu 1 296 -15 412 272 177 7 chr5 16847896 16848043 -186237489 + MER5A DNA MER1_type 17 188 -1 186 43 0 0 chr5 16848077 16848100 -186237432 + (CA)n Simple_repeat Simple_repeat 2 24 0 3977 152 6 13 chr5 16848914 16849546 -186235986 + LTR48B LTR ERV1 1 628 -16 202 255 79 26 chr5 16850810 16850921 -186234611 - MIR SINE MIR -64 144 56 375 268 84 21 chr5 16850958 16851100 -186234432 + MIR SINE MIR 30 180 -82 686 322 62 11 chr5 16851525 16851798 -186233734 + LTR16A1 LTR ERVL 49 335 -122 1749 167 75 56 chr5 16851798 16852184 -186233348 - MSTA LTR MaLR 0 428 34 257 276 57 9 chr5 16852197 16852302 -186233230 + LTR16A1 LTR ERVL 348 457 0 2822 152 56 51 chr5 16852571 16852606 -186232926 - MER67C LTR ERV1 -1 709 676 1774 199 38 30 chr5 16852606 16852977 -186232555 + MLT1A2 LTR MaLR 1 374 0 2822 152 56 51 chr5 16852977 16853513 -186232019 - MER67C LTR ERV1 -34 676 135 796 177 8 0 chr5 16853514 16853638 -186231894 - FLAM_C SINE Alu -17 126 2 671 204 62 0 chr5 16853639 16853801 -186231731 - MER67C LTR ERV1 -538 172 1 839 149 39 72 chr5 16854125 16854304 -186231228 - LTR8A LTR ERV1 0 727 555 1935 163 18 127 chr5 16854304 16854856 -186230676 + LTR22B LTR ERVK 1 492 0 2675 132 108 32 chr5 16854912 16855413 -186230119 - LTR8A LTR ERV1 -188 539 1 298 275 88 0 chr5 16855775 16855866 -186229666 - MIR SINE MIR -62 146 48 4014 128 62 3 chr5 16856010 16856119 -186229413 - LTR9 LTR ERV1 0 612 511 185 0 0 39 chr5 16856119 16856145 -186229387 + (GAGAA)n Simple_repeat Simple_repeat 2 26 0 4014 128 62 3 chr5 16856145 16856613 -186228919 - LTR9 LTR ERV1 -101 511 1 257 269 0 54 chr5 16856626 16856719 -186228813 - MER112 DNA MER1_type -17 243 156 542 150 110 24 chr5 16856734 16856861 -186228671 + L1MA8 LINE L1 6148 6285 -6 283 231 77 0 chr5 16856877 16856955 -186228577 - MER112 DNA MER1_type -103 157 74 367 328 63 11 chr5 16856986 16857160 -186228372 - MIR3 SINE MIR -19 189 7 201 39 0 0 chr5 16857587 16857613 -186227919 + (GGCTG)n Simple_repeat Simple_repeat 1 26 0 285 215 15 15 chr5 16857653 16857718 -186227814 + MIR SINE MIR 89 153 -109 855 129 29 0 chr5 16857996 16858135 -186227397 + L1MC3 LINE L1 6905 7047 -738 1787 131 3 77 chr5 16858141 16858514 -186227018 - MER4A LTR ERV1 0 664 261 514 161 54 0 chr5 16858514 16858607 -186226925 - MER4A LTR ERV1 -566 98 1 2511 172 203 20 chr5 16858607 16858980 -186226552 + L1MC3 LINE L1 7038 7341 -444 2440 71 3 0 chr5 16858980 16859277 -186226255 - AluSc SINE Alu -11 298 1 2511 172 203 20 chr5 16859277 16859513 -186226019 + L1MC3 LINE L1 7341 7759 -26 234 279 293 7 chr5 16859779 16859926 -186225606 - L2 LINE L2 -923 2391 2203 216 365 31 0 chr5 16860018 16860114 -186225418 + MIR SINE MIR 56 154 -108 313 314 66 15 chr5 16861603 16861740 -186223792 + MIR SINE MIR 47 190 -72 2714 74 19 93 chr5 16862091 16862173 -186223359 - MLT2A1 LTR ERVL 0 444 357 315 0 0 0 chr5 16862173 16862208 -186223324 + (CA)n Simple_repeat Simple_repeat 2 36 0 2714 74 19 93 chr5 16862208 16862597 -186222935 - MLT2A1 LTR ERVL -87 357 8 1675 206 90 30 chr5 16862743 16863145 -186222387 + MLT1C LTR MaLR 1 426 -41 459 223 76 76 chr5 16863185 16863342 -186222190 + L2 LINE L2 3153 3309 -4 1423 227 56 82 chr5 16863735 16863946 -186221586 - MLT1D LTR MaLR 0 505 290 2462 127 16 21 chr5 16863946 16864323 -186221209 - THE1C LTR MaLR 0 375 1 11054 117 15 30 chr5 16864323 16865927 -186219605 - THE1C-int LTR MaLR 0 1580 1 2073 124 69 36 chr5 16865927 16866290 -186219242 - THE1C LTR MaLR 0 375 1 1423 227 56 82 chr5 16866290 16866566 -186218966 - MLT1D LTR MaLR -213 292 27 450 36 0 0 chr5 16866566 16866622 -186218910 + (TG)n Simple_repeat Simple_repeat 1 56 0 1423 227 56 82 chr5 16866622 16866646 -186218886 - MLT1D LTR MaLR -478 27 4 443 268 51 25 chr5 16866892 16867049 -186218483 + MER103 DNA DNA 4 164 -2 2586 125 37 0 chr5 16867382 16867758 -186217774 + MLT1B LTR MaLR 1 390 0 1745 183 134 78 chr5 16869172 16869648 -186215884 - MLT1D LTR MaLR 0 505 3 243 319 64 14 chr5 16870844 16870985 -186214547 + MIR SINE MIR 61 208 -54 2202 97 23 19 chr5 16871773 16872083 -186213449 - AluY SINE Alu 0 311 1 228 250 29 15 chr5 16872139 16872207 -186213325 - L2 LINE L2 -16 3297 3229 1695 296 131 23 chr5 16872210 16872340 -186213192 + L2 LINE L2 2043 2158 -1155 923 222 27 40 chr5 16872340 16872565 -186212967 - MER58A DNA MER1_type 0 224 3 1695 296 131 23 chr5 16872565 16873568 -186211964 + L2 LINE L2 2158 3313 0 26 0 0 0 chr5 16874963 16874989 -186210543 + AT_rich Low_complexity Low_complexity 1 26 0 1467 176 119 62 chr5 16875042 16875411 -186210121 + MLT1B LTR MaLR 1 390 0 359 197 0 0 chr5 16875676 16875737 -186209795 + MER81 DNA DNA 53 113 -1 1078 233 152 34 chr5 16875813 16876431 -186209101 - LTR50 LTR ERVL -4 791 4 267 346 39 15 chr5 16876818 16876948 -186208584 - MIR SINE MIR -93 169 37 1021 212 55 53 chr5 16877508 16877850 -186207682 - MLT1A1 LTR MaLR -3 429 1 7043 233 57 33 chr5 16877850 16877967 -186207565 - MSTD-int LTR MaLR 0 1735 1622 2379 95 0 6 chr5 16877967 16878282 -186207250 + AluSq SINE Alu 1 313 0 7043 233 57 33 chr5 16878282 16879858 -186205674 - MSTD-int LTR MaLR -113 1622 2 1199 227 119 28 chr5 16879860 16880039 -186205493 - MSTD LTR MaLR -2 394 233 2170 133 29 35 chr5 16880039 16880415 -186205117 + THE1C LTR MaLR 2 375 0 1199 227 119 28 chr5 16880415 16880596 -186204936 - MSTD LTR MaLR -163 233 1 793 245 0 5 chr5 16880813 16880997 -186204535 + L1MA8 LINE L1 2713 2895 -3251 2355 214 43 28 chr5 16881088 16881716 -186203816 - MER49 LTR ERV1 -66 766 180 9794 199 26 31 chr5 16881728 16882320 -186203212 + L1MA8 LINE L1 2903 3496 -2795 1204 65 19 0 chr5 16882320 16882518 -186203014 + AluY SINE Alu 127 327 0 9794 199 26 31 chr5 16882518 16884313 -186201219 + L1MA8 LINE L1 3496 5318 -973 2660 101 14 14 chr5 16884313 16884668 -186200864 + THE1A LTR MaLR 1 355 0 9794 199 26 31 chr5 16884668 16885208 -186200324 + L1MA8 LINE L1 5318 5859 -432 2367 282 30 26 chr5 16885192 16885913 -186199619 + L1PA15 LINE L1 1 724 -6063 * 6191 225 13 42 chr5 16885990 16887374 -186198158 + L1PA15 LINE L1 1332 2621 -4176 2292 87 3 0 chr5 16887374 16887661 -186197871 - AluY SINE Alu -23 288 1 6191 225 13 42 chr5 16887661 16888730 -186196802 + L1PA15 LINE L1 2621 3719 -3078 5797 136 14 18 chr5 16888738 16890048 -186195484 + L1PA15 LINE L1 4826 6128 -688 2179 112 36 7 chr5 16890048 16890352 -186195180 + AluSq SINE Alu 1 313 0 5797 136 14 18 chr5 16890352 16891034 -186194498 + L1PA15 LINE L1 6128 6811 -5 216 0 0 0 chr5 16891039 16891063 -186194469 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2336 180 32 15 chr5 16891063 16891120 -186194412 + L1MA8 LINE L1 5823 5878 -413 2775 150 9 23 chr5 16891120 16891554 -186193978 - MSTC LTR MaLR 0 428 1 2336 180 32 15 chr5 16891554 16891951 -186193581 + L1MA8 LINE L1 5878 6291 0 1797 191 56 31 chr5 16892263 16892619 -186192913 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr5 16893045 16893066 -186192466 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr5 16893226 16893271 -186192261 + AT_rich Low_complexity Low_complexity 1 45 0 383 214 0 24 chr5 16893386 16893470 -186192062 - L1ME4a LINE L1 -80 6041 5960 194 297 79 10 chr5 16893509 16893610 -186191922 - MIR SINE MIR -59 149 42 270 0 0 0 chr5 16894323 16894353 -186191179 + (TA)n Simple_repeat Simple_repeat 2 31 0 1707 171 35 3 chr5 16894360 16894646 -186190886 - AluJb SINE Alu -17 295 1 830 190 68 25 chr5 16894731 16895031 -186190501 + MLT1A2 LTR MaLR 1 373 -1 733 324 52 21 chr5 16895529 16896108 -186189424 - L1ME4a LINE L1 -260 5861 5258 397 245 10 20 chr5 16898491 16898589 -186186943 + MER5B DNA MER1_type 82 178 0 424 257 151 0 chr5 16898605 16898757 -186186775 + MER5A DNA MER1_type 9 183 -6 459 284 32 13 chr5 16898819 16898974 -186186558 - MER90 LTR ERV1 -14 561 404 215 171 0 0 chr5 16899211 16899246 -186186286 - L3 LINE CR1 -611 966 932 499 288 35 53 chr5 16901251 16901477 -186184055 + MIR SINE MIR 5 226 -36 287 159 0 0 chr5 16901640 16901698 -186183834 - MLT2C1 LTR ERVL 0 397 350 1327 220 52 65 chr5 16901967 16902431 -186183101 - MLT2C2 LTR ERVL 0 464 7 196 231 83 37 chr5 16902437 16902545 -186182987 - L2 LINE L2 -226 3087 2975 360 64 0 0 chr5 16902757 16902804 -186182728 + (CA)n Simple_repeat Simple_repeat 1 47 0 243 0 0 0 chr5 16902954 16902981 -186182551 + (T)n Simple_repeat Simple_repeat 1 27 0 2260 103 60 20 chr5 16903673 16904023 -186181509 - THE1B LTR MaLR 0 364 1 11193 90 37 3 chr5 16904023 16905551 -186179981 - THE1B-int LTR MaLR 0 1580 1 2139 126 51 28 chr5 16905551 16905907 -186179625 - THE1B LTR MaLR 0 364 1 2602 141 30 2 chr5 16907049 16907518 -186178014 - L1MB2 LINE L1 -2 6169 5688 329 310 108 8 chr5 16908147 16908276 -186177256 + MIR SINE MIR 47 188 -74 635 259 99 12 chr5 16909764 16910007 -186175525 - LTR16B LTR ERVL -12 452 189 541 329 52 49 chr5 16910027 16910799 -186174733 - ERVL LTR ERVL -388 5376 4603 1265 303 38 28 chr5 16910800 16910898 -186174634 - ERVL LTR ERVL -2765 2231 2135 2028 118 55 30 chr5 16910898 16911264 -186174268 + THE1C LTR MaLR 1 375 0 1265 303 38 28 chr5 16911264 16911666 -186173866 - ERVL LTR ERVL -2861 2135 1726 2207 220 56 58 chr5 16911666 16912405 -186173127 - L1M4c LINE L1 -4703 1943 1205 4353 63 4 0 chr5 16912405 16912962 -186172570 + L1PA8 LINE L1 5606 6164 -8 2207 220 56 58 chr5 16912962 16913193 -186172339 - L1M4c LINE L1 -5441 1205 975 468 108 14 0 chr5 16913300 16913374 -186172158 - AluY SINE Alu -11 300 226 1185 105 6 0 chr5 16913374 16913536 -186171996 - AluY SINE Alu -148 163 1 2607 224 43 87 chr5 16913546 16914513 -186171019 - L1M4c LINE L1 -5613 929 5 1278 315 116 34 chr5 16914812 16916020 -186169512 + L2 LINE L2 1420 2726 -588 249 295 16 33 chr5 16916757 16916879 -186168653 + MLT1H LTR MaLR 411 530 -19 201 147 0 0 chr5 16917785 16917819 -186167713 + (TA)n Simple_repeat Simple_repeat 1 34 0 194 62 31 0 chr5 16918710 16918742 -186166790 + (TA)n Simple_repeat Simple_repeat 2 34 0 1413 208 30 30 chr5 16919519 16919880 -186165652 - MLT1A1 LTR MaLR 0 365 5 1215 176 19 85 chr5 16920096 16920415 -186165117 + MER67D LTR ERV1 14 311 -203 701 235 104 0 chr5 16920469 16920652 -186164880 + MER67D LTR ERV1 310 511 -3 1051 261 157 28 chr5 16921092 16921725 -186163807 - L2 LINE L2 0 3313 2580 715 207 36 72 chr5 16921727 16921949 -186163583 - MER20 DNA MER1_type -5 214 1 304 333 175 0 chr5 16921950 16922070 -186163462 - L2 LINE L2 -725 2589 2449 281 306 127 8 chr5 16922071 16922205 -186163327 - LTR16A LTR ERVL -300 150 1 359 280 99 74 chr5 16923329 16923465 -186162067 - MIR SINE MIR 0 262 116 1989 149 7 0 chr5 16923465 16923761 -186161771 + AluSx SINE Alu 1 298 -14 359 280 99 74 chr5 16923761 16923867 -186161665 - MIR SINE MIR -146 116 14 222 150 0 0 chr5 16924746 16924786 -186160746 + (CA)n Simple_repeat Simple_repeat 2 41 0 249 295 95 42 chr5 16926115 16926305 -186159227 + L2 LINE L2 3050 3249 -64 1522 17 0 0 chr5 16926611 16926784 -186158748 + L1PA3 LINE L1 5979 6151 -4 278 294 20 0 chr5 16927095 16927197 -186158335 + (TA)n Simple_repeat Simple_repeat 1 104 0 200 280 27 40 chr5 16928992 16929067 -186156465 - L2 LINE L2 -522 2792 2719 1006 302 40 3 chr5 16929559 16929959 -186155573 - L2 LINE L2 -252 3061 2646 189 250 0 0 chr5 16931163 16931211 -186154321 - L2 LINE L2 0 3313 3266 4029 81 9 4 chr5 16932498 16933083 -186152449 + L1PA14 LINE L1 5327 5913 -248 2099 119 19 25 chr5 16933084 16933446 -186152086 + THE1C LTR MaLR 15 374 -1 1884 86 0 0 chr5 16933446 16933702 -186151830 + L1PA14 LINE L1 5906 6161 0 22 0 0 0 chr5 16933707 16933729 -186151803 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr5 16934178 16934222 -186151310 + AT_rich Low_complexity Low_complexity 1 44 0 22 70 0 0 chr5 16934527 16934570 -186150962 + AT_rich Low_complexity Low_complexity 1 43 0 2329 60 0 7 chr5 16937298 16937605 -186147927 + AluY SINE Alu 1 305 0 18753 55 1 7 chr5 16937646 16940833 -186144699 + L1PA6 LINE L1 2970 6153 -1 2009 117 33 0 chr5 16941346 16941680 -186143852 - AluSx SINE Alu 0 343 1 1025 160 0 11 chr5 16942296 16942483 -186143049 - Tigger4(Zombi) DNA MER2_type 0 2731 2547 33 0 0 0 chr5 16942537 16942570 -186142962 + AT_rich Low_complexity Low_complexity 1 33 0 254 149 0 0 chr5 16942574 16942621 -186142911 - Tigger4(Zombi) DNA MER2_type -191 2540 2494 1280 165 41 0 chr5 16942627 16942869 -186142663 - Tigger4(Zombi) DNA MER2_type -2479 252 1 417 253 63 76 chr5 16943476 16943634 -186141898 + L2 LINE L2 3158 3313 0 365 293 66 82 chr5 16943635 16943698 -186141834 + L2 LINE L2 2444 2506 -808 2310 128 103 5 chr5 16943698 16944088 -186141444 + MSTA LTR MaLR 1 428 0 365 293 66 82 chr5 16944088 16944341 -186141191 + L2 LINE L2 2506 2755 -559 22 0 0 0 chr5 16944676 16944698 -186140834 + AT_rich Low_complexity Low_complexity 1 22 0 236 317 98 32 chr5 16945274 16945397 -186140135 - MER91C DNA MER1_type -9 131 1 203 432 0 0 chr5 16945401 16945489 -186140043 + MIR SINE MIR 31 118 -90 221 258 22 22 chr5 16945513 16945602 -186139930 + (TA)n Simple_repeat Simple_repeat 2 90 0 24 0 0 0 chr5 16945779 16945803 -186139729 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr5 16946701 16946723 -186138809 + AT_rich Low_complexity Low_complexity 1 22 0 312 229 110 18 chr5 16946787 16946896 -186138636 + MER94 DNA DNA 3 121 -13 249 265 1 27 chr5 16947613 16947688 -186137844 + MER21B LTR ERV1 24 125 -480 2183 119 0 0 chr5 16947832 16948125 -186137407 + AluSc SINE Alu 1 293 -16 1060 266 58 44 chr5 16948139 16948567 -186136965 + MER21B LTR ERV1 254 687 -176 1853 181 16 5 chr5 16950384 16950562 -186134970 + MLT1B LTR MaLR 1 176 -214 2321 114 13 0 chr5 16950562 16950870 -186134662 + AluSx SINE Alu 1 312 0 1853 181 16 5 chr5 16950870 16951072 -186134460 + MLT1B LTR MaLR 176 385 -5 2404 46 0 3 chr5 16951292 16951575 -186133957 + AluY SINE Alu 1 282 -29 22 0 0 0 chr5 16952028 16952050 -186133482 + AT_rich Low_complexity Low_complexity 1 22 0 2312 68 0 43 chr5 16953073 16953395 -186132137 + AluY SINE Alu 1 308 -3 3370 112 89 4 chr5 16953399 16953960 -186131572 + L1MA3 LINE L1 5697 6305 0 945 272 41 0 chr5 16954535 16954781 -186130751 - MIR SINE MIR -1 261 6 1936 177 0 0 chr5 16954921 16955220 -186130312 - AluJb SINE Alu -13 299 1 277 349 23 16 chr5 16956080 16956209 -186129323 - MER5B DNA MER1_type -48 130 1 21 0 0 0 chr5 16956644 16956665 -186128867 + AT_rich Low_complexity Low_complexity 1 21 0 181 222 0 44 chr5 16957258 16957303 -186128229 - L2 LINE L2 -2894 420 378 722 250 282 0 chr5 16957676 16957992 -186127540 - L2 LINE L2 -1 3312 2908 830 205 21 7 chr5 16957998 16958244 -186127288 + MLT1A1 LTR MaLR 5 334 -31 791 286 99 40 chr5 16958377 16958874 -186126658 - L2 LINE L2 -986 2328 1803 1150 95 0 0 chr5 16960931 16961079 -186124453 + AluSg SINE Alu 1 148 -162 477 299 120 0 chr5 16962591 16962775 -186122757 + MIR SINE MIR 47 252 -10 2388 83 0 7 chr5 16963157 16963459 -186122073 + AluSg SINE Alu 1 300 -10 798 112 112 22 chr5 16963514 16963692 -186121840 + L1MB3 LINE L1 5988 6181 -2 633 316 30 30 chr5 16964018 16964252 -186121280 - MIR SINE MIR -26 236 3 22 35 0 0 chr5 16964277 16964306 -186121226 + AT_rich Low_complexity Low_complexity 1 29 0 1457 205 47 10 chr5 16964399 16964696 -186120836 - AluJo SINE Alu -4 308 1 1984 157 3 3 chr5 16964853 16965165 -186120367 - AluJb SINE Alu 0 312 1 24 0 0 0 chr5 16966149 16966173 -186119359 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr5 16966279 16966325 -186119207 + AT_rich Low_complexity Low_complexity 1 46 0 3331 142 13 31 chr5 16967576 16967675 -186117857 + L1MB2 LINE L1 5569 5668 -503 1903 150 7 7 chr5 16967675 16967955 -186117577 + AluSx SINE Alu 2 281 -31 270 0 0 0 chr5 16967961 16967991 -186117541 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 3331 142 13 31 chr5 16967991 16968498 -186117034 + L1MB2 LINE L1 5673 6171 0 2626 102 11 5 chr5 16968978 16969349 -186116183 + THE1C LTR MaLR 1 373 -2 3875 108 65 76 chr5 16969349 16970100 -186115432 + THE1C-int LTR MaLR 4 746 -834 1512 88 5 5 chr5 16970100 16970317 -186115215 + THE1C-int LTR MaLR 1364 1580 0 2621 102 16 5 chr5 16970317 16970688 -186114844 + THE1C LTR MaLR 1 375 0 1908 250 37 47 chr5 16971047 16971618 -186113914 + MLT1E LTR MaLR 29 593 0 21 0 0 0 chr5 16971927 16971948 -186113584 + AT_rich Low_complexity Low_complexity 1 21 0 392 229 83 14 chr5 16973585 16973729 -186111803 + MER103 DNA DNA 4 157 -9 343 264 101 27 chr5 16974440 16974610 -186110922 - MIR SINE MIR -52 210 30 946 92 0 14 chr5 16974635 16974777 -186110755 + L1PA13 LINE L1 6023 6162 -1 269 321 75 0 chr5 16975250 16975356 -186110176 + L2 LINE L2 3197 3310 -3 2249 107 0 13 chr5 16975773 16976072 -186109460 + AluSg SINE Alu 1 295 -15 266 254 105 27 chr5 16976173 16976297 -186109235 - MIR3 SINE MIR -49 159 25 21 0 0 0 chr5 16976841 16976862 -186108670 + AT_rich Low_complexity Low_complexity 1 21 0 241 232 18 0 chr5 16977105 16977161 -186108371 - L2 LINE L2 -1 3312 3256 717 279 135 22 chr5 16977184 16977630 -186107902 - L2 LINE L2 -219 3094 2590 1937 112 22 0 chr5 16977638 16977905 -186107627 + AluSx SINE Alu 22 294 -18 3247 153 44 10 chr5 16977907 16978526 -186107006 + LTR9B LTR ERV1 5 644 0 185 325 26 34 chr5 16978534 16978651 -186106881 - L2 LINE L2 -749 2565 2450 372 208 0 0 chr5 16978672 16978744 -186106788 - MLT1D LTR MaLR -433 72 1 1241 285 148 4 chr5 16978759 16979271 -186106261 - L2 LINE L2 -881 2433 1848 1436 244 99 38 chr5 16979277 16979851 -186105681 + MLT1E2 LTR MaLR 13 621 -5 327 284 341 21 chr5 16979854 16980273 -186105259 - L2 LINE L2 -1457 1857 1305 2095 122 6 13 chr5 16980307 16980618 -186104914 - AluY SINE Alu -2 309 1 452 194 0 0 chr5 16980635 16980738 -186104794 - L1MA7 LINE L1 -2 6289 6187 315 301 30 38 chr5 16980816 16980865 -186104667 - MIR3 SINE MIR -9 199 151 3234 108 16 85 chr5 16980865 16981428 -186104104 + MER1A DNA MER1_type 4 527 0 315 301 30 38 chr5 16981428 16981511 -186104021 - MIR3 SINE MIR -57 151 68 2120 113 0 0 chr5 16984712 16985134 -186100398 + AluSq SINE Alu 1 422 0 535 196 0 10 chr5 16985290 16985392 -186100140 + MER69A DNA AcHobo 4 104 -73 412 334 88 34 chr5 16985694 16986047 -186099485 + L2 LINE L2 2475 2846 -468 577 180 16 8 chr5 16986048 16986170 -186099362 + MLT1C LTR MaLR 1 123 -344 368 80 293 13 chr5 16986169 16986244 -186099288 + MLT1C LTR MaLR 372 467 0 * 250 322 53 13 chr5 16986297 16986449 -186099083 + L2 LINE L2 2921 3078 -194 252 315 0 0 chr5 16986764 16986818 -186098714 + L2 LINE L2 3202 3255 -17 28 0 0 0 chr5 16988370 16988398 -186097134 + AT_rich Low_complexity Low_complexity 1 28 0 1951 149 0 38 chr5 16988437 16988753 -186096779 - AluSx SINE Alu -8 304 1 1355 99 25 0 chr5 16988759 16988960 -186096572 - L1PA15 LINE L1 -16 6149 5944 1992 140 16 13 chr5 16990057 16990365 -186095167 + AluSx SINE Alu 1 309 -3 180 97 0 0 chr5 16990383 16990414 -186095118 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 3075 123 25 82 chr5 16990975 16991534 -186093998 - MER1A DNA MER1_type 0 527 1 454 32 63 0 chr5 16991673 16991736 -186093796 - L1PA4 LINE L1 -2 6153 6087 21 57 0 0 chr5 16993814 16993849 -186091683 + AT_rich Low_complexity Low_complexity 1 35 0 1953 154 3 7 chr5 16993926 16994224 -186091308 - AluJb SINE Alu -15 297 1 24545 103 26 67 chr5 16994395 16994778 -186090754 + L1PA7 LINE L1 8 405 -6056 2372 89 3 0 chr5 16994778 16995081 -186090451 - AluSp SINE Alu -9 304 1 24545 103 26 67 chr5 16995081 16997819 -186087713 + L1PA7 LINE L1 405 2851 -3610 2831 0 0 0 chr5 16997819 16998122 -186087410 - AluYa5 SINE Alu -8 303 1 24545 103 26 67 chr5 16998122 17000616 -186084916 + L1PA7 LINE L1 2851 5446 -1015 4454 67 3 0 chr5 17000616 17001193 -186084339 + L1PA7 LINE L1 5887 6469 0 273 250 74 48 chr5 17002809 17002958 -186082574 + MLT1J LTR MaLR 1 126 -320 701 235 24 24 chr5 17002986 17003156 -186082376 - MER5B DNA MER1_type -7 171 2 503 303 15 20 chr5 17003213 17003408 -186082124 + MLT1J LTR MaLR 315 508 -3 401 252 41 32 chr5 17003583 17003706 -186081826 + L2 LINE L2 3186 3309 -4 2186 110 13 0 chr5 17004291 17004590 -186080942 + AluSx SINE Alu 4 306 -6 29 28 0 0 chr5 17005455 17005491 -186080041 + AT_rich Low_complexity Low_complexity 1 36 0 590 301 167 53 chr5 17005776 17006586 -186078946 + L2 LINE L2 2072 2973 -341 2158 98 49 0 chr5 17007620 17007906 -186077626 - AluSc SINE Alu -9 300 1 344 311 34 0 chr5 17009550 17009669 -186075863 + L2 LINE L2 3149 3271 -1 2114 113 26 47 chr5 17009825 17010205 -186075327 + THE1C LTR MaLR 2 373 -2 233 271 29 0 chr5 17010779 17010849 -186074683 + MIR SINE MIR 117 188 -74 238 258 108 42 chr5 17012250 17012417 -186073115 + L1ME4a LINE L1 5944 6121 0 216 0 0 0 chr5 17012419 17012443 -186073089 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 249 255 255 0 chr5 17012717 17012815 -186072717 + MIR SINE MIR 82 204 -58 614 245 137 8 chr5 17012817 17013183 -186072349 + LTR16A1 LTR ERVL 8 442 -15 254 282 119 66 chr5 17014596 17014915 -186070617 - LTR33 LTR ERVL -183 338 3 368 323 55 30 chr5 17014921 17015156 -186070376 - L1M4 LINE L1 -1535 4611 4371 917 210 10 68 chr5 17015463 17015748 -186069784 + L1PB4 LINE L1 5903 6296 -2 201 208 21 0 chr5 17015943 17015991 -186069541 + (TTA)n Simple_repeat Simple_repeat 1 49 0 215 79 26 0 chr5 17016255 17016293 -186069239 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 814 174 0 0 chr5 17016293 17016414 -186069118 - FLAM_C SINE Alu -22 121 1 1750 199 3 0 chr5 17017138 17017430 -186068102 - AluSx SINE Alu -19 293 1 2271 103 10 0 chr5 17017799 17018100 -186067432 + AluSq SINE Alu 1 304 -9 2068 251 30 48 chr5 17019509 17020345 -186065187 + L1M3de LINE L1 938 1867 -5619 6732 234 15 14 chr5 17020359 17021907 -186063625 + L1M3de LINE L1 1199 2535 -4951 534 165 11 0 chr5 17021907 17021998 -186063534 - Tigger5 DNA MER2_type 0 2323 2232 286 240 0 27 chr5 17022047 17022122 -186063410 - Tigger5 DNA MER2_type 0 2323 2251 286 175 0 35 chr5 17022089 17022146 -186063386 - Tigger5 DNA MER2_type -2268 55 1 6117 222 52 31 chr5 17022146 17025159 -186060373 + L1M3de LINE L1 2259 5293 -2272 188 109 0 109 chr5 17025794 17025840 -186059692 + L2 LINE L2 3273 3313 0 25 0 0 0 chr5 17026558 17026583 -186058949 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr5 17026938 17026962 -186058570 + AT_rich Low_complexity Low_complexity 1 24 0 418 212 53 44 chr5 17027017 17027130 -186058402 + MIR SINE MIR 90 203 -59 2030 116 7 13 chr5 17027168 17027471 -186058061 + AluSx SINE Alu 1 301 -11 25 0 0 0 chr5 17027475 17027500 -186058032 + AT_rich Low_complexity Low_complexity 1 25 0 195 129 0 0 chr5 17027520 17027551 -186057981 + (CA)n Simple_repeat Simple_repeat 1 31 0 327 104 0 0 chr5 17027879 17027927 -186057605 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 542 259 157 5 chr5 17029398 17029583 -186055949 + MIR SINE MIR 50 262 0 364 330 146 40 chr5 17030082 17030891 -186054641 + L2 LINE L2 748 1642 -1672 435 283 101 25 chr5 17030943 17031141 -186054391 + L2 LINE L2 2916 3128 -185 660 296 45 42 chr5 17031309 17031711 -186053821 + L1ME4a LINE L1 5530 5932 -189 24 67 0 0 chr5 17031774 17031819 -186053713 + AT_rich Low_complexity Low_complexity 1 45 0 1681 206 138 16 chr5 17032040 17032541 -186052991 + MER68 LTR ERV1 1 562 0 2139 111 3 3 chr5 17032738 17033035 -186052497 + AluSx SINE Alu 1 297 -15 693 167 65 14 chr5 17034888 17035026 -186050506 + MLT1D LTR MaLR 1 145 -360 233 306 62 42 chr5 17035288 17035432 -186050100 - L3b LINE CR1 -133 1450 1304 255 229 0 0 chr5 17036100 17036161 -186049371 + L1MA7 LINE L1 6197 6257 -34 24 67 0 0 chr5 17036206 17036251 -186049281 + AT_rich Low_complexity Low_complexity 1 45 0 364 252 37 0 chr5 17036660 17036767 -186048765 - MER103 DNA DNA -45 121 11 2689 3 0 3 chr5 17037597 17037891 -186047641 + AluYa5 SINE Alu 1 293 -18 1628 265 122 53 chr5 17038254 17039301 -186046231 + L2 LINE L2 2183 3305 -8 368 155 70 120 chr5 17039615 17039757 -186045775 - MER103 DNA DNA -12 154 20 238 347 57 32 chr5 17040017 17040141 -186045391 - MIR3 SINE MIR -67 141 15 1458 301 44 9 chr5 17040397 17040856 -186044676 + MLT1H1 LTR MaLR 26 500 -55 474 303 55 55 chr5 17041120 17041358 -186044174 + MIR SINE MIR 3 240 -22 1404 293 54 71 chr5 17041400 17041534 -186043998 + L2 LINE L2 1894 2029 -1285 2289 107 7 0 chr5 17041534 17041844 -186043688 - AluSx SINE Alu 0 312 1 1404 293 54 71 chr5 17041844 17042748 -186042784 + L2 LINE L2 2029 2914 -400 27 87 0 0 chr5 17044224 17044293 -186041239 + AT_rich Low_complexity Low_complexity 1 69 0 446 326 160 39 chr5 17044809 17045196 -186040336 + L1MEd LINE L1 29 462 -5657 348 250 12 0 chr5 17045209 17045293 -186040239 - MER58 DNA MER1_type -60 281 197 501 309 77 50 chr5 17045359 17046103 -186039429 + L1MEd LINE L1 489 1252 -4867 25 51 0 0 chr5 17046166 17046205 -186039327 + AT_rich Low_complexity Low_complexity 1 39 0 464 344 41 36 chr5 17046212 17046575 -186038957 + L1MEd LINE L1 1321 1685 -4444 340 281 154 19 chr5 17046661 17046921 -186038611 + L1MEd LINE L1 1877 2171 -3958 197 199 60 0 chr5 17046935 17047101 -186038431 + (TA)n Simple_repeat Simple_repeat 1 176 0 288 246 20 91 chr5 17047184 17047242 -186038290 + L1MEd LINE L1 2196 2257 -3872 1961 167 0 0 chr5 17047242 17047553 -186037979 + AluJb SINE Alu 1 311 -1 288 246 20 91 chr5 17047553 17047693 -186037839 + L1MEd LINE L1 2257 2380 -3749 1596 196 125 3 chr5 17047806 17048159 -186037373 + MSTD LTR MaLR 1 396 0 4866 143 37 18 chr5 17048165 17049057 -186036475 + L1MC1 LINE L1 5425 6333 0 593 301 54 24 chr5 17049124 17049699 -186035833 + L1MEd LINE L1 2647 3238 -2891 2239 82 7 0 chr5 17049762 17050042 -186035490 + AluSx SINE Alu 1 282 -30 1734 136 55 16 chr5 17051768 17052076 -186033456 - MER44D DNA MER2_type 0 609 20 277 351 97 9 chr5 17052390 17052504 -186033028 + L2 LINE L2 3137 3260 -12 956 259 8 29 chr5 17052786 17053029 -186032503 + MIR SINE MIR 4 241 -21 239 270 40 10 chr5 17055019 17055119 -186030413 + (TA)n Simple_repeat Simple_repeat 1 103 0 239 257 28 37 chr5 17055181 17055290 -186030242 + (TA)n Simple_repeat Simple_repeat 1 108 0 212 250 0 0 chr5 17055481 17055525 -186030007 - L2 LINE L2 -2 3311 3268 180 200 40 20 chr5 17056005 17056055 -186029477 + L2 LINE L2 3263 3313 0 388 230 20 0 chr5 17057860 17057960 -186027572 + L1MC5 LINE L1 7797 7898 -63 37 0 0 0 chr5 17058722 17058759 -186026773 + AT_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr5 17059209 17059239 -186026293 + AT_rich Low_complexity Low_complexity 1 30 0 237 197 33 0 chr5 17059560 17059621 -186025911 + L1MC4 LINE L1 6641 6703 -1339 233 342 13 0 chr5 17060254 17060333 -186025199 - L2 LINE L2 0 3313 3234 1536 201 102 56 chr5 17060595 17061079 -186024453 + MLT1F1 LTR MaLR 7 513 -54 2190 99 13 7 chr5 17061079 17061381 -186024151 - AluSg SINE Alu -6 304 1 1536 201 102 56 chr5 17061381 17061439 -186024093 + MLT1F1 LTR MaLR 513 567 0 1181 125 31 18 chr5 17062247 17062413 -186023119 - L1MA4A LINE L1 0 6303 6132 522 42 111 0 chr5 17062413 17062485 -186023047 - MADE1 DNA Mariner 0 80 1 1181 125 31 18 chr5 17062485 17062542 -186022990 - L1MA4A LINE L1 -171 6132 6077 572 27 0 0 chr5 17063629 17063702 -186021830 + L1PA4 LINE L1 6080 6152 -3 426 79 0 0 chr5 17064026 17064089 -186021443 + (TC)n Simple_repeat Simple_repeat 2 64 0 396 0 0 0 chr5 17064089 17064133 -186021399 + (CA)n Simple_repeat Simple_repeat 1 44 0 2294 99 0 3 chr5 17065059 17065362 -186020170 + AluSx SINE Alu 2 303 -9 2263 85 3 7 chr5 17066375 17066670 -186018862 + AluSq SINE Alu 1 294 -19 238 273 0 136 chr5 17066686 17066796 -186018736 - MIR SINE MIR -104 104 10 564 275 60 64 chr5 17066862 17067007 -186018525 + MIR SINE MIR 12 157 -105 2400 90 3 0 chr5 17067007 17067308 -186018224 + AluSp SINE Alu 1 302 -11 564 275 60 64 chr5 17067308 17067413 -186018119 + MIR SINE MIR 157 261 -1 2188 127 5 42 chr5 17068028 17068405 -186017127 - THE1B LTR MaLR -1 363 1 381 203 0 0 chr5 17068468 17068542 -186016990 + MER81 DNA DNA 10 83 -31 30 27 0 0 chr5 17069684 17069721 -186015811 + AT_rich Low_complexity Low_complexity 1 37 0 2130 90 3 72 chr5 17069826 17070158 -186015374 + AluSc SINE Alu 1 309 0 3923 135 33 19 chr5 17071422 17072124 -186013408 + L1MB2 LINE L1 5457 6168 -3 378 266 53 9 chr5 17072556 17072669 -186012863 + MIR SINE MIR 141 258 -4 578 267 9 59 chr5 17072815 17073036 -186012496 - MER63A DNA MER1_type 0 210 1 292 269 145 0 chr5 17074022 17074167 -186011365 - L1ME4a LINE L1 -1 6120 5955 262 269 76 19 chr5 17074461 17074632 -186010900 - L1ME4a LINE L1 -206 5915 5728 231 200 20 0 chr5 17074712 17074762 -186010770 - L2 LINE L2 -1 3312 3262 192 390 88 48 chr5 17075062 17075357 -186010175 - L2 LINE L2 -367 2947 2641 232 321 124 22 chr5 17075400 17075537 -186009995 - L2 LINE L2 -926 2388 2238 804 221 38 9 chr5 17075543 17075756 -186009776 - MER20 DNA MER1_type 0 219 1 277 256 64 13 chr5 17075843 17075921 -186009611 - MER91B DNA MER1_type -107 83 2 225 188 0 42 chr5 17075926 17075974 -186009558 + L2 LINE L2 3268 3313 0 2269 113 7 0 chr5 17076123 17076423 -186009109 + AluSx SINE Alu 1 302 -10 766 292 144 14 chr5 17076548 17077061 -186008471 + MLT1G1 LTR MaLR 8 587 -8 275 331 47 24 chr5 17077121 17077248 -186008284 - L2 LINE L2 -1480 1834 1705 560 298 36 6 chr5 17078730 17078898 -186006634 + MIR3 SINE MIR 18 190 -18 355 270 88 15 chr5 17079628 17079765 -186005767 - MIR SINE MIR -74 188 42 3349 167 12 78 chr5 17080559 17081303 -186004229 + MER44D DNA MER2_type 10 704 -1 258 348 25 8 chr5 17081711 17081829 -186003703 + L2 LINE L2 3188 3307 -6 22 0 0 0 chr5 17083019 17083041 -186002491 + AT_rich Low_complexity Low_complexity 1 22 0 748 191 23 23 chr5 17083112 17083285 -186002247 - MER5B DNA MER1_type -5 173 1 261 286 78 0 chr5 17083494 17083571 -186001961 + L2 LINE L2 3231 3313 0 1809 158 7 17 chr5 17083689 17083986 -186001546 + AluJo SINE Alu 6 299 -13 2622 117 33 35 chr5 17085062 17085548 -185999984 + MER31A LTR ERV1 1 485 0 243 305 84 130 chr5 17085820 17086128 -185999404 - L2 LINE L2 0 3272 2979 23 0 0 0 chr5 17086808 17086831 -185998701 + AT_rich Low_complexity Low_complexity 1 23 0 1811 160 7 10 chr5 17088217 17088517 -185997015 - AluJb SINE Alu -13 299 1 285 281 11 22 chr5 17089438 17089527 -185996005 - L2 LINE L2 -1 3312 3225 499 204 68 20 chr5 17089550 17089697 -185995835 - MER104 DNA Tc2 -26 154 1 213 313 45 15 chr5 17089946 17090013 -185995519 + MIR SINE MIR 5 73 -189 854 291 10 14 chr5 17090552 17090841 -185994691 + HsTC2b DNA Tc2 64 351 -564 529 218 218 5 chr5 17090837 17091039 -185994493 + HsTC2b DNA Tc2 640 884 -34 * 2200 88 32 3 chr5 17092904 17093189 -185992343 - AluSp SINE Alu -20 293 1 2076 148 0 10 chr5 17093822 17094133 -185991399 - AluJo SINE Alu -4 308 1 941 114 0 23 chr5 17095405 17095536 -185989996 - FRAM SINE Alu -24 152 25 21 0 0 0 chr5 17095663 17095684 -185989848 + AT_rich Low_complexity Low_complexity 1 21 0 2285 115 0 6 chr5 17096307 17096621 -185988911 - AluSx SINE Alu 0 312 1 2254 131 91 10 chr5 17097627 17098023 -185987509 + MSTA LTR MaLR 1 428 0 311 218 0 0 chr5 17098918 17098973 -185986559 + L2 LINE L2 3211 3265 -7 36 0 0 0 chr5 17100173 17100209 -185985323 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr5 17100422 17100464 -185985068 + AT_rich Low_complexity Low_complexity 1 42 0 201 182 0 0 chr5 17100567 17100600 -185984932 + (TA)n Simple_repeat Simple_repeat 1 33 0 454 287 56 9 chr5 17100606 17100822 -185984710 - L1ME4a LINE L1 -238 5883 5658 249 229 29 131 chr5 17100904 17101079 -185984453 - L1ME4a LINE L1 -2337 5471 5315 1917 120 45 0 chr5 17101570 17101858 -185983674 - AluSx SINE Alu 0 302 3 2282 89 3 3 chr5 17102299 17102591 -185982941 + AluSq SINE Alu 1 292 -21 952 239 42 5 chr5 17103026 17103239 -185982293 + MER58A DNA MER1_type 4 224 0 27 49 0 0 chr5 17103786 17103827 -185981705 + AT_rich Low_complexity Low_complexity 1 41 0 256 185 0 0 chr5 17103832 17103886 -185981646 - MIR SINE MIR -108 154 101 220 217 0 0 chr5 17103927 17103973 -185981559 - MIR SINE MIR -114 148 103 2365 112 0 0 chr5 17103975 17104287 -185981245 + AluSx SINE Alu 1 312 0 22 35 0 0 chr5 17104514 17104543 -185980989 + AT_rich Low_complexity Low_complexity 1 29 0 1026 126 11 33 chr5 17104608 17104791 -185980741 - L1MA10 LINE L1 0 6334 6156 21 0 0 0 chr5 17104880 17104901 -185980631 + AT_rich Low_complexity Low_complexity 1 21 0 834 183 102 42 chr5 17105101 17105470 -185980062 - MER31B LTR ERV1 0 466 1 1690 156 30 13 chr5 17105722 17105909 -185979623 + LTR64 LTR ERVK 1 197 -361 2269 85 3 3 chr5 17105909 17106222 -185979310 + AluSx SINE Alu 1 313 0 1690 156 30 13 chr5 17106222 17106335 -185979197 + LTR64 LTR ERVK 197 307 -251 1199 142 118 5 chr5 17106356 17106568 -185978964 - AluJo SINE Alu -66 246 11 860 211 211 0 chr5 17106582 17106809 -185978723 + LTR64 LTR ERVK 284 558 0 259 56 0 0 chr5 17108421 17108457 -185977075 - L1PB1 LINE L1 -1 6866 6831 18121 134 59 24 chr5 17108519 17108814 -185976718 - L1PB1 LINE L1 -40 6827 6544 210 71 0 0 chr5 17108814 17108842 -185976690 + (TG)n Simple_repeat Simple_repeat 2 29 0 18121 134 59 24 chr5 17108842 17109461 -185976071 - L1PB1 LINE L1 -323 6544 5948 2087 134 6 13 chr5 17109461 17109775 -185975757 - AluSx SINE Alu 0 312 1 18121 134 59 24 chr5 17109775 17110235 -185975297 - L1PB1 LINE L1 -919 5948 5505 210 37 0 0 chr5 17110235 17110262 -185975270 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 18121 134 59 24 chr5 17110262 17115479 -185970053 - L1PB1 LINE L1 -1362 5505 4 282 95 0 0 chr5 17115528 17115570 -185969962 + AluJo SINE Alu 89 130 -172 1879 225 83 7 chr5 17115578 17116022 -185969510 + MLT1D LTR MaLR 28 505 0 272 93 167 0 chr5 17116133 17116187 -185969345 + MIR SINE MIR 84 146 -116 2228 159 21 45 chr5 17116296 17116718 -185968814 + MER65A LTR ERV1 1 412 -33 1845 148 40 3 chr5 17116740 17117037 -185968495 - AluJb SINE Alu -3 309 2 254 204 0 0 chr5 17117037 17117086 -185968446 + MER65A LTR ERV1 397 445 0 1814 142 78 26 chr5 17117684 17118029 -185967503 - THE1B LTR MaLR 0 364 2 240 264 27 109 chr5 17118384 17118494 -185967038 + LTR67 LTR ERVL 100 200 -357 731 224 48 0 chr5 17118503 17118650 -185966882 + AluJo SINE Alu 137 290 -22 2124 206 60 37 chr5 17118845 17119303 -185966229 + MER44D DNA MER2_type 1 447 -2040 198 0 0 0 chr5 17119303 17119325 -185966207 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 294 29 0 0 chr5 17119324 17119359 -185966173 + (CA)n Simple_repeat Simple_repeat 2 36 0 2124 206 60 37 chr5 17119325 17119438 -185966094 + MER44D DNA MER2_type 447 605 0 21 36 0 0 chr5 17119571 17119599 -185965933 + AT_rich Low_complexity Low_complexity 1 28 0 598 185 35 17 chr5 17119990 17120126 -185965406 - MLT1A1 LTR MaLR -2 570 260 1669 190 78 13 chr5 17120820 17121134 -185964398 + MLT2D LTR ERVL 6 351 -63 2023 159 45 0 chr5 17121134 17121467 -185964065 + MER7A DNA MER2_type 1 346 0 1669 190 78 13 chr5 17121467 17121536 -185963996 + MLT2D LTR ERVL 351 414 0 644 305 35 39 chr5 17121580 17122134 -185963398 + L2 LINE L2 2725 3312 -1 * 1081 250 167 56 chr5 17122123 17122446 -185963086 + L2 LINE L2 1700 1986 -1327 2186 108 3 16 chr5 17122446 17122751 -185962781 - AluSc SINE Alu -8 301 1 1081 250 167 56 chr5 17122751 17123857 -185961675 + L2 LINE L2 1986 3308 -5 262 260 78 0 chr5 17123912 17123989 -185961543 + L2 LINE L2 3149 3231 -41 2377 141 16 33 chr5 17124416 17124843 -185960689 + MER95 LTR ERV 7 426 -5 202 401 0 0 chr5 17125082 17125259 -185960273 + (TGAA)n Simple_repeat Simple_repeat 1 177 0 262 360 27 0 chr5 17125599 17125749 -185959783 + MER5B DNA MER1_type 1 154 -24 774 184 7 0 chr5 17125954 17126095 -185959437 - Charlie1 DNA MER1_type 0 2761 2620 435 223 291 0 chr5 17126089 17126264 -185959268 - Charlie1 DNA MER1_type -2534 227 2 * 763 211 94 55 chr5 17126519 17126827 -185958705 + MLT1D LTR MaLR 9 328 -177 5049 41 0 2 chr5 17126827 17127437 -185958095 - L1P LINE L1 -1679 4467 3859 5319 36 0 0 chr5 17127437 17128043 -185957489 + L1PA5 LINE L1 5528 6143 -11 333 0 0 0 chr5 17128044 17128081 -185957451 + (TA)n Simple_repeat Simple_repeat 1 37 0 754 164 26 77 chr5 17128081 17128276 -185957256 + MLT1D LTR MaLR 320 504 -1 362 255 50 56 chr5 17129731 17129892 -185955640 + LTR16C LTR ERVL 332 491 0 2124 92 50 3 chr5 17130185 17130467 -185955065 + AluSx SINE Alu 2 296 -16 2297 108 0 13 chr5 17131030 17131335 -185954197 - AluSx SINE Alu -11 301 1 2234 97 0 23 chr5 17131341 17131640 -185953892 - AluSg SINE Alu -18 292 1 324 219 91 91 chr5 17131909 17132096 -185953436 + L1ME4a LINE L1 5787 5976 -145 2561 63 0 0 chr5 17132096 17132396 -185953136 - AluY SINE Alu -11 300 1 324 219 91 91 chr5 17132396 17132495 -185953037 + L1ME4a LINE L1 5975 6073 -48 1086 211 9 5 chr5 17132506 17132724 -185952808 - MIR SINE MIR -26 236 18 195 139 0 0 chr5 17132766 17132802 -185952730 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 2398 87 0 3 chr5 17132884 17133195 -185952337 + AluY SINE Alu 1 310 -1 2220 122 3 0 chr5 17133199 17133503 -185952029 + AluSq SINE Alu 1 305 -8 738 119 22 0 chr5 17134099 17134233 -185951299 + GA-rich Low_complexity Low_complexity 3 139 0 1887 223 57 94 chr5 17138070 17138811 -185946721 - MER69B DNA AcHobo -9 1217 505 392 145 36 36 chr5 17138830 17138913 -185946619 - MLT1A1 LTR MaLR -282 83 1 4045 196 63 20 chr5 17138921 17139733 -185945799 - MLT1A1-int LTR MaLR -2 1733 887 3382 118 58 74 chr5 17139737 17140099 -185945433 - MLT1A1-int LTR MaLR -1107 628 243 280 0 28 0 chr5 17140099 17140135 -185945397 - tRNA-Cys-TGC tRNA tRNA -38 37 1 3382 118 58 74 chr5 17140135 17140375 -185945157 - MLT1A1-int LTR MaLR -1492 243 1 1635 206 13 68 chr5 17140375 17140460 -185945072 - MLT1A1 LTR MaLR 0 365 277 2380 101 0 0 chr5 17140460 17140756 -185944776 - AluSx SINE Alu -16 296 1 1635 206 13 68 chr5 17140756 17141054 -185944478 - MLT1A1 LTR MaLR -88 277 3 518 162 179 0 chr5 17141058 17141175 -185944357 - MER69B DNA AcHobo -1087 139 2 2209 119 0 0 chr5 17141490 17141784 -185943748 - AluSx SINE Alu -18 294 1 3841 169 34 18 chr5 17141811 17142549 -185942983 - L1MB1 LINE L1 -1 6167 5418 1513 201 87 47 chr5 17142636 17143083 -185942449 + MLT1C LTR MaLR 1 465 -2 703 102 17 17 chr5 17143085 17143203 -185942329 - L1P LINE L1 -747 5419 5302 4585 129 17 8 chr5 17143203 17143925 -185941607 + L1PA16 LINE L1 5438 6166 0 2339 96 3 19 chr5 17143961 17144274 -185941258 - AluY SINE Alu -3 308 1 192 77 0 0 chr5 17144277 17144303 -185941229 + (T)n Simple_repeat Simple_repeat 1 26 0 2209 116 0 0 chr5 17144516 17144808 -185940724 - AluSc SINE Alu -17 292 1 27 0 0 0 chr5 17145435 17145462 -185940070 + AT_rich Low_complexity Low_complexity 1 27 0 883 211 161 70 chr5 17146153 17146698 -185938834 + MLT1G1 LTR MaLR 1 595 0 328 254 91 0 chr5 17147150 17147260 -185938272 + MIR SINE MIR 25 144 -64 374 300 33 0 chr5 17147365 17147485 -185938047 + MIR3 SINE MIR 54 177 -31 323 308 8 38 chr5 17148737 17148870 -185936662 + MIR SINE MIR 13 141 -121 1882 179 54 14 chr5 17148947 17149316 -185936216 - MLT1B LTR MaLR -6 384 1 271 244 24 12 chr5 17149674 17149756 -185935776 + L2 LINE L2 3197 3279 -34 2282 119 3 0 chr5 17150502 17150813 -185934719 + AluSx SINE Alu 1 312 0 225 239 25 25 chr5 17150850 17150951 -185934581 + GA-rich Low_complexity Low_complexity 2 105 -55 1874 115 28 65 chr5 17150951 17151272 -185934260 + AluSx SINE Alu 1 309 -3 225 239 25 25 chr5 17151272 17151329 -185934203 + GA-rich Low_complexity Low_complexity 104 160 0 229 229 0 43 chr5 17151338 17151408 -185934124 + L2 LINE L2 3246 3312 -1 524 245 123 19 chr5 17152524 17152785 -185932747 - L1ME4a LINE L1 -2 6119 5832 195 69 0 0 chr5 17154465 17154494 -185931038 + (CGCGG)n Simple_repeat Simple_repeat 3 31 0 1593 115 24 77 chr5 17155017 17155355 -185930177 - MER33 DNA MER1_type 0 324 5 3342 131 10 4 chr5 17155368 17155858 -185929674 - MER1A DNA MER1_type 0 529 37 2245 94 3 7 chr5 17155969 17156266 -185929266 - AluSq SINE Alu -17 296 1 2045 118 20 10 chr5 17156266 17156563 -185928969 - AluSx SINE Alu -12 300 1 302 264 65 52 chr5 17157022 17157177 -185928355 - MIR SINE MIR -47 215 59 2204 125 0 0 chr5 17157920 17158209 -185927323 - AluSx SINE Alu -23 289 1 209 241 69 0 chr5 17158277 17158335 -185927197 + L2 LINE L2 3244 3305 -8 2368 108 10 0 chr5 17158488 17158795 -185926737 + AluSg SINE Alu 1 310 0 244 306 0 0 chr5 17158836 17158898 -185926634 - MIR SINE MIR -105 103 42 826 292 58 65 chr5 17160451 17161003 -185924529 + LTR67 LTR ERVL 2 549 -8 5603 125 2 6 chr5 17161008 17161872 -185923660 - L1P LINE L1 -1033 5113 4253 2195 108 35 20 chr5 17161872 17162201 -185923331 + L1PA10 LINE L1 5817 6164 -4 237 214 0 18 chr5 17162491 17162547 -185922985 - MLT2C1 LTR ERVL -2 518 464 420 20 0 0 chr5 17162563 17162612 -185922920 + (CA)n Simple_repeat Simple_repeat 1 49 0 739 229 78 0 chr5 17162638 17162804 -185922728 - MLT2C1 LTR ERVL -40 357 179 778 163 23 8 chr5 17163292 17163421 -185922111 + AluJ SINE Alu 5 135 -177 7143 23 0 1 chr5 17163421 17164236 -185921296 - L1PA4 LINE L1 -4 6151 5338 914 216 0 0 chr5 17164237 17164404 -185921128 + AluJ SINE Alu 134 300 -12 693 248 40 0 chr5 17164737 17164939 -185920593 + LTR37B LTR ERV1 4 213 -255 438 204 0 45 chr5 17165003 17165091 -185920441 + FLAM_A SINE Alu 36 119 -23 186 133 0 0 chr5 17165104 17165134 -185920398 + (TA)n Simple_repeat Simple_repeat 1 30 0 237 239 22 43 chr5 17165135 17165227 -185920305 + L1MC4 LINE L1 6614 6703 -1339 253 278 0 0 chr5 17165227 17165299 -185920233 + LTR37B LTR ERV1 217 288 -180 329 204 54 0 chr5 17165345 17165438 -185920094 + LTR37B LTR ERV1 368 465 -3 1319 218 35 58 chr5 17166392 17166791 -185918741 - MLT1B LTR MaLR 0 390 1 198 316 231 0 chr5 17166893 17167010 -185918522 - L2 LINE L2 0 3272 3129 2153 122 3 7 chr5 17167530 17167825 -185917707 - AluSx SINE Alu -18 294 1 32 43 0 0 chr5 17167886 17167932 -185917600 + AT_rich Low_complexity Low_complexity 1 46 0 208 158 0 26 chr5 17168533 17168571 -185916961 + (TG)n Simple_repeat Simple_repeat 2 38 0 2307 116 0 0 chr5 17169320 17169621 -185915911 - AluSx SINE Alu -11 301 1 3759 164 13 80 chr5 17170512 17171230 -185914302 + L1MB8 LINE L1 5382 6036 -142 1874 148 32 3 chr5 17171230 17171514 -185914018 + AluJb SINE Alu 1 292 -20 3759 164 13 80 chr5 17171514 17171648 -185913884 + L1MB8 LINE L1 6036 6177 -1 208 327 69 40 chr5 17172927 17173129 -185912403 + L2 LINE L2 1168 1375 -1939 598 256 63 5 chr5 17173335 17173526 -185912006 + MIR SINE MIR 51 252 -10 200 203 62 16 chr5 17173543 17173607 -185911925 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 1420 120 0 0 chr5 17173641 17173825 -185911707 - AluSg SINE Alu -126 184 1 269 290 206 0 chr5 17174413 17174520 -185911012 - MER94 DNA DNA -4 130 2 243 319 33 44 chr5 17174755 17174937 -185910595 + L2 LINE L2 2221 2400 -914 228 320 70 33 chr5 17175185 17175429 -185910103 + L2 LINE L2 1789 2041 -1273 218 277 89 0 chr5 17175429 17175541 -185909991 - L2 LINE L2 -917 2397 2276 528 156 11 0 chr5 17175546 17175636 -185909896 - MER3 DNA MER1_type 0 209 119 387 206 0 0 chr5 17176079 17176152 -185909380 + L2 LINE L2 3240 3312 -1 257 109 22 0 chr5 17176153 17176199 -185909333 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 291 280 127 38 chr5 17176934 17176993 -185908539 - MIR SINE MIR -67 195 143 2247 108 76 15 chr5 17176993 17177336 -185908196 - THE1B LTR MaLR 0 364 1 291 280 127 38 chr5 17177336 17177433 -185908099 - MIR SINE MIR -119 143 25 1399 228 13 0 chr5 17177699 17177997 -185907535 + MLT1H1 LTR MaLR 254 555 0 249 338 45 15 chr5 17178942 17179075 -185906457 - L3b LINE CR1 -8 1575 1439 227 167 48 0 chr5 17179199 17179241 -185906291 - MER91 DNA MER1_type -11 185 142 1183 183 19 60 chr5 17180299 17180527 -185905005 + L1MB5 LINE L1 5912 6129 -45 2281 99 3 0 chr5 17180527 17180821 -185904711 + AluSx SINE Alu 1 295 -17 1183 183 19 60 chr5 17180821 17180860 -185904672 + L1MB5 LINE L1 6129 6168 -6 293 103 0 0 chr5 17180909 17180948 -185904584 + Charlie8 DNA MER1_type 123 161 -2256 1405 205 88 57 chr5 17181336 17181789 -185903743 - MLT1C LTR MaLR 0 467 1 354 233 35 0 chr5 17181830 17181916 -185903616 + L2 LINE L2 3206 3294 -19 325 274 26 26 chr5 17182324 17182437 -185903095 + MER5A DNA MER1_type 2 114 -75 749 297 40 11 chr5 17182686 17182962 -185902570 + MLT1L LTR MaLR 7 290 -325 2277 170 60 44 chr5 17183089 17183588 -185901944 - LTR53 LTR ERVL -2 517 11 262 111 0 0 chr5 17183943 17183979 -185901553 + LTR16C LTR ERVL 456 491 0 2121 121 46 35 chr5 17184907 17185278 -185900254 + THE1C LTR MaLR 1 375 0 264 206 44 15 chr5 17185560 17185628 -185899904 + MIR SINE MIR 79 148 -114 735 199 18 47 chr5 17185634 17185805 -185899727 + MER45A DNA AcHobo 6 171 -7 2104 139 0 0 chr5 17185902 17186219 -185899313 + AluJb SINE Alu 1 317 0 414 256 62 23 chr5 17186688 17186817 -185898715 + MER46C DNA MER2_type 4 137 -201 1701 186 0 4 chr5 17186890 17187170 -185898362 + AluJb SINE Alu 1 279 -33 1058 99 0 8 chr5 17187171 17187438 -185898094 + (GAAA)n Simple_repeat Simple_repeat 1 264 0 292 213 33 0 chr5 17187438 17187499 -185898033 + MER46C DNA MER2_type 275 337 -1 2105 122 3 16 chr5 17187572 17187884 -185897648 + AluSq SINE Alu 1 308 -5 2673 144 32 18 chr5 17187890 17188389 -185897143 + L1MB3 LINE L1 5668 6173 -10 2175 114 0 10 chr5 17188389 17188695 -185896837 - AluSc SINE Alu -6 303 1 2011 195 54 40 chr5 17189114 17189612 -185895920 - MLT1D LTR MaLR 0 505 1 2358 81 14 0 chr5 17189652 17189821 -185895711 - AluY SINE Alu -11 300 124 252 0 0 0 chr5 17189821 17189849 -185895683 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2358 81 14 0 chr5 17189849 17189975 -185895557 - AluY SINE Alu -187 124 1 1257 285 101 41 chr5 17190142 17190679 -185894853 + L1ME2 LINE L1 1 569 -5550 917 216 33 29 chr5 17191449 17191722 -185893810 + L1ME2 LINE L1 4388 4661 -1468 602 174 36 151 chr5 17191731 17191821 -185893711 - LTR16B LTR ERVL 0 464 412 2266 115 0 0 chr5 17191821 17192116 -185893416 + AluSq SINE Alu 1 295 -18 602 174 36 151 chr5 17192116 17192244 -185893288 - LTR16B LTR ERVL -52 412 271 387 228 48 120 chr5 17192290 17192457 -185893075 - LTR16B LTR ERVL -307 157 3 3144 225 77 28 chr5 17192457 17192883 -185892649 + L1ME2 LINE L1 4665 5069 -1078 1690 66 5 5 chr5 17192883 17193094 -185892438 + AluY SINE Alu 92 302 -9 3144 225 77 28 chr5 17193094 17194065 -185891467 + L1ME2 LINE L1 5069 6138 -9 987 164 7 0 chr5 17194104 17194256 -185891276 + AluJb SINE Alu 137 289 -23 2310 92 16 7 chr5 17194457 17194762 -185890770 - AluSq SINE Alu -5 308 1 1984 255 73 43 chr5 17194875 17195658 -185889874 - L2 LINE L2 -3 3310 2473 2198 117 3 32 chr5 17195658 17195974 -185889558 + AluSx SINE Alu 6 312 0 1984 255 73 43 chr5 17195974 17196164 -185889368 - L2 LINE L2 -840 2473 2290 5001 113 54 22 chr5 17196164 17196341 -185889191 + Tigger3(Golem) DNA MER2_type 2188 2358 -670 2376 78 3 3 chr5 17196341 17196636 -185888896 + AluSq SINE Alu 1 295 -18 5001 113 54 22 chr5 17196636 17197273 -185888259 + Tigger3(Golem) DNA MER2_type 2358 3028 0 285 61 61 61 chr5 17197273 17197322 -185888210 + MLT2B1 LTR ERVL 472 520 0 300 242 161 32 chr5 17197323 17197509 -185888023 - L2 LINE L2 -2208 1106 897 1160 194 24 0 chr5 17198524 17198735 -185886797 + MER20 DNA MER1_type 2 217 -2 2081 149 28 3 chr5 17198827 17199190 -185886342 + L1PA16 LINE L1 5794 6165 -1 184 255 117 43 chr5 17199199 17199293 -185886239 - MIR SINE MIR -157 105 5 2526 49 0 0 chr5 17199320 17199608 -185885924 + AluY SINE Alu 19 306 -5 736 211 31 6 chr5 17199845 17200006 -185885526 + MIR SINE MIR 76 240 -22 2900 173 59 2 chr5 17200728 17201305 -185884227 - L1MB5 LINE L1 -13 6161 5552 376 316 153 4 chr5 17201414 17201642 -185883890 + MIR SINE MIR 1 262 0 347 253 0 0 chr5 17201892 17201987 -185883545 - L2 LINE L2 0 3313 3219 542 182 0 10 chr5 17201987 17202086 -185883446 + MER4A LTR ERV1 1 98 -566 1551 145 155 97 chr5 17202086 17202466 -185883066 + MER4A LTR ERV1 263 664 0 224 224 69 0 chr5 17202467 17202525 -185883007 - L2 LINE L2 -92 3221 3160 452 297 109 17 chr5 17202526 17202579 -185882953 - MIR SINE MIR 0 262 215 1107 237 0 18 chr5 17202579 17202807 -185882725 + MER58A DNA MER1_type 1 224 0 452 297 109 17 chr5 17202807 17202992 -185882540 - MIR SINE MIR -47 215 2 457 317 145 25 chr5 17203139 17203615 -185881917 - L2 LINE L2 -347 2967 2435 334 158 0 18 chr5 17203909 17203966 -185881566 - LTR67 LTR ERVL -388 169 114 284 125 0 94 chr5 17203925 17203989 -185881543 - MLT1J LTR MaLR -363 148 91 * 2224 92 0 10 chr5 17204056 17204350 -185881182 + AluSx SINE Alu 1 291 -21 245 327 36 0 chr5 17204441 17204551 -185880981 - L2 LINE L2 -893 2421 2308 26 64 0 0 chr5 17204757 17204804 -185880728 + AT_rich Low_complexity Low_complexity 1 47 0 2552 205 58 45 chr5 17205101 17206308 -185879224 + L1ME1 LINE L1 4603 5869 -309 413 218 0 0 chr5 17206312 17206399 -185879133 - MER119 DNA MER1_type -36 547 461 * 454 296 114 0 chr5 17206393 17206525 -185879007 - MER119 DNA MER1_type -436 147 1 641 196 120 48 chr5 17206525 17206734 -185878798 + L1ME1 LINE L1 5938 6161 -5 1510 139 4 24 chr5 17206747 17206998 -185878534 + AluJo SINE Alu 31 276 -36 2191 121 3 3 chr5 17206999 17207304 -185878228 + AluSp SINE Alu 1 305 -8 206 108 54 0 chr5 17207319 17207356 -185878176 + A-rich Low_complexity Low_complexity 2 40 0 466 272 58 5 chr5 17207868 17208059 -185877473 - MIR SINE MIR -5 257 57 463 216 32 32 chr5 17208917 17209042 -185876490 - MER94 DNA DNA -9 125 1 764 228 19 0 chr5 17209152 17209314 -185876218 + MER33 DNA MER1_type 1 165 -159 1116 136 0 0 chr5 17209314 17209468 -185876064 + AluJb SINE Alu 133 286 -26 2021 127 3 10 chr5 17209537 17209828 -185875704 - AluSx SINE Alu -19 293 5 1722 159 3 28 chr5 17209834 17210117 -185875415 - AluJo SINE Alu -21 291 16 467 180 150 0 chr5 17210186 17210286 -185875246 + MER33 DNA MER1_type 210 324 0 2311 109 0 0 chr5 17210407 17210710 -185874822 + AluSg SINE Alu 1 303 -7 301 250 25 0 chr5 17210721 17210801 -185874731 + GA-rich Low_complexity Low_complexity 2 83 0 458 232 10 10 chr5 17211966 17212065 -185873467 + MER99 DNA DNA 3 101 -727 988 195 0 0 chr5 17212072 17212236 -185873296 - AluJb SINE Alu -11 301 138 2226 114 3 0 chr5 17212320 17212617 -185872915 - AluSx SINE Alu -14 298 1 2766 199 41 30 chr5 17212622 17213038 -185872494 + MER99 DNA DNA 158 585 -243 1946 200 15 10 chr5 17213038 17213428 -185872104 - MSTD LTR MaLR -2 394 3 2766 199 41 30 chr5 17213428 17213670 -185871862 + MER99 DNA DNA 585 823 -5 192 317 99 76 chr5 17213833 17214095 -185871437 - L2 LINE L2 0 3272 3005 244 68 23 23 chr5 17214739 17214783 -185870749 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 379 264 60 36 chr5 17215167 17215334 -185870198 + L1ME2 LINE L1 5404 5574 -592 747 294 54 59 chr5 17215351 17215409 -185870123 - LTR16A LTR ERVL -10 440 383 2309 111 0 0 chr5 17215409 17215707 -185869825 + AluSx SINE Alu 1 298 -14 747 294 54 59 chr5 17215707 17216002 -185869530 - LTR16A LTR ERVL -67 383 89 334 314 64 50 chr5 17216006 17216289 -185869243 + L1ME2 LINE L1 5591 5877 -287 207 100 0 0 chr5 17216735 17216765 -185868767 + (CA)n Simple_repeat Simple_repeat 1 30 0 1521 208 0 40 chr5 17217348 17217651 -185867881 + AluJo SINE Alu 1 291 -21 325 301 0 11 chr5 17217792 17217885 -185867647 - MLT1I LTR MaLR 0 409 318 1025 231 98 11 chr5 17217930 17218216 -185867316 - MLT1C LTR MaLR -141 326 16 382 274 52 7 chr5 17218243 17218378 -185867154 - MLT1J2 LTR MaLR -236 214 74 619 42 0 0 chr5 17219538 17219609 -185865923 + MER30 DNA MER1_type 12 82 -148 1859 136 7 23 chr5 17219612 17219914 -185865618 + AluSx SINE Alu 1 297 -15 968 155 19 0 chr5 17219939 17220100 -185865432 + MER30 DNA MER1_type 66 229 -1 1727 136 48 22 chr5 17220657 17220930 -185864602 + AluJo SINE Alu 11 290 -22 2237 105 3 0 chr5 17221090 17221384 -185864148 + AluSx SINE Alu 5 299 -13 249 146 0 42 chr5 17221436 17221484 -185864048 + Alu SINE Alu 234 274 -29 250 192 24 40 chr5 17221507 17221632 -185863900 + (TAAA)n Simple_repeat Simple_repeat 1 123 0 1131 167 51 0 chr5 17221632 17221847 -185863685 + L1PB4 LINE L1 5922 6147 -9 2248 91 3 3 chr5 17221847 17222132 -185863400 - AluY SINE Alu -21 290 6 740 215 0 6 chr5 17222704 17222876 -185862656 - Charlie1 DNA MER1_type 0 2761 2591 848 141 78 0 chr5 17222884 17223026 -185862506 - AluJb SINE Alu -22 290 138 1805 141 0 59 chr5 17223048 17223354 -185862178 - AluJb SINE Alu -24 288 1 189 86 99 12 chr5 17223413 17223494 -185862038 + (TATAA)n Simple_repeat Simple_repeat 3 90 0 1054 239 62 7 chr5 17223513 17223822 -185861710 - Charlie1 DNA MER1_type -147 2614 2289 1219 107 6 0 chr5 17223922 17224081 -185861451 - AluSx SINE Alu -148 164 5 1678 161 7 28 chr5 17224087 17224372 -185861160 - AluJo SINE Alu -21 291 13 467 180 150 0 chr5 17224420 17224520 -185861012 + Charlie5 DNA MER1_type 2471 2585 -27 2327 108 0 0 chr5 17224641 17224946 -185860586 + AluSg SINE Alu 1 305 -5 301 250 25 0 chr5 17224958 17225038 -185860494 + GA-rich Low_complexity Low_complexity 2 83 0 470 222 10 10 chr5 17226203 17226302 -185859230 + MER99 DNA DNA 3 101 -727 952 200 0 0 chr5 17226309 17226469 -185859063 - AluJb SINE Alu -15 297 138 2226 114 3 0 chr5 17226553 17226850 -185858682 - AluSx SINE Alu -14 298 1 2766 199 41 30 chr5 17226855 17227271 -185858261 + MER99 DNA DNA 158 585 -243 1946 200 15 10 chr5 17227271 17227661 -185857871 - MSTD LTR MaLR -2 394 3 2766 199 41 30 chr5 17227661 17227903 -185857629 + MER99 DNA DNA 585 823 -5 192 317 99 76 chr5 17228066 17228328 -185857204 - L2 LINE L2 0 3272 3005 244 68 23 23 chr5 17228972 17229016 -185856516 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 379 264 60 36 chr5 17229400 17229567 -185855965 + L1ME2 LINE L1 5404 5574 -592 747 294 54 59 chr5 17229584 17229642 -185855890 - LTR16A LTR ERVL -10 440 383 2309 111 0 0 chr5 17229642 17229940 -185855592 + AluSx SINE Alu 1 298 -14 747 294 54 59 chr5 17229940 17230235 -185855297 - LTR16A LTR ERVL -67 383 89 334 314 64 50 chr5 17230239 17230522 -185855010 + L1ME2 LINE L1 5591 5877 -287 207 100 0 0 chr5 17230969 17230999 -185854533 + (CA)n Simple_repeat Simple_repeat 1 30 0 1527 209 0 36 chr5 17231579 17231881 -185853651 + AluJo SINE Alu 1 291 -21 325 301 0 11 chr5 17232021 17232114 -185853418 - MLT1I LTR MaLR 0 409 318 1007 234 98 11 chr5 17232159 17232445 -185853087 - MLT1C LTR MaLR -141 326 16 379 263 45 8 chr5 17232474 17232607 -185852925 - MLT1J2 LTR MaLR -239 211 74 1362 99 12 115 chr5 17233767 17233840 -185851692 + MER30 DNA MER1_type 12 91 -139 2062 146 3 0 chr5 17233840 17234149 -185851383 + AluSx SINE Alu 1 310 -2 1362 99 12 115 chr5 17234149 17234318 -185851214 + MER30 DNA MER1_type 91 229 -1 1696 139 48 22 chr5 17234875 17235148 -185850384 + AluJo SINE Alu 11 290 -22 2237 105 3 0 chr5 17235308 17235602 -185849930 + AluSx SINE Alu 5 299 -13 234 171 0 0 chr5 17235661 17235702 -185849830 + Alu SINE Alu 234 274 -29 250 192 24 40 chr5 17235725 17235850 -185849682 + (TAAA)n Simple_repeat Simple_repeat 1 123 0 1207 166 42 0 chr5 17235850 17236067 -185849465 + L1PB4 LINE L1 5922 6147 -9 2248 91 3 3 chr5 17236067 17236352 -185849180 - AluY SINE Alu -21 290 6 750 209 0 6 chr5 17236924 17237096 -185848436 - Charlie1a DNA MER1_type 0 1455 1285 848 141 78 0 chr5 17237104 17237246 -185848286 - AluJb SINE Alu -22 290 138 1762 141 3 59 chr5 17237268 17237573 -185847959 - AluJb SINE Alu -24 288 1 189 86 99 12 chr5 17237632 17237713 -185847819 + (TATAA)n Simple_repeat Simple_repeat 3 90 0 4897 206 64 25 chr5 17237732 17238265 -185847267 - Charlie1a DNA MER1_type -1453 1308 797 2414 66 7 3 chr5 17238265 17238566 -185846966 - AluSp SINE Alu -11 302 1 4897 206 64 25 chr5 17238566 17239289 -185846243 - Charlie1a DNA MER1_type -1964 797 3 1081 252 52 14 chr5 17239344 17239634 -185845898 - LTR16C LTR ERVL -4 487 187 429 316 47 57 chr5 17239671 17240054 -185845478 + L2 LINE L2 2935 3313 0 207 0 0 0 chr5 17240608 17240631 -185844901 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 566 284 14 32 chr5 17242366 17242584 -185842948 - MIR SINE MIR -22 240 27 2464 42 0 11 chr5 17242802 17243125 -185842407 + AluY SINE Alu 1 320 0 1777 158 9 29 chr5 17243470 17243786 -185841746 + AluJo SINE Alu 1 310 -2 2346 89 7 0 chr5 17244504 17244795 -185840737 + AluSq SINE Alu 1 293 -20 2593 208 66 36 chr5 17245438 17245639 -185839893 + L1MC4 LINE L1 6812 7005 -1037 2276 98 7 0 chr5 17245639 17245935 -185839597 + AluSx SINE Alu 1 298 -14 2593 208 66 36 chr5 17245935 17246427 -185839105 + L1MC4 LINE L1 7005 7526 -516 2340 82 0 14 chr5 17246527 17246821 -185838711 + AluSx SINE Alu 23 312 0 1168 224 98 90 chr5 17246821 17247330 -185838202 + L1MC4 LINE L1 7518 8030 -12 241 277 96 21 chr5 17247819 17247913 -185837619 + MLT1H LTR MaLR 432 532 -17 2211 95 0 7 chr5 17247925 17248241 -185837291 + AluSq SINE Alu 1 314 0 1992 130 3 14 chr5 17248321 17248613 -185836919 + AluJo SINE Alu 9 297 -15 2524 73 0 3 chr5 17249340 17249643 -185835889 + AluSq SINE Alu 1 302 -11 229 291 23 35 chr5 17251364 17251450 -185834082 - MIR SINE MIR -163 99 15 2265 110 10 3 chr5 17252557 17252867 -185832665 - AluSx SINE Alu 0 312 1 6200 192 49 20 chr5 17253021 17254486 -185831046 + L1MB7 LINE L1 3960 5516 -668 2360 115 0 0 chr5 17254486 17254798 -185830734 + AluSx SINE Alu 1 312 0 6200 192 49 20 chr5 17254798 17255488 -185830044 + L1MB7 LINE L1 5516 6184 0 1965 161 0 0 chr5 17255551 17255843 -185829689 - AluJb SINE Alu -20 292 1 599 273 113 30 chr5 17255871 17256102 -185829430 + MLT1L LTR MaLR 1 250 -365 692 219 65 7 chr5 17256153 17256308 -185829224 + FRAM SINE Alu 1 164 -2 1015 123 0 11 chr5 17256288 17256467 -185829065 + (GGAA)n Simple_repeat Simple_repeat 2 178 0 2097 136 3 0 chr5 17257012 17257321 -185828211 - AluSx SINE Alu -2 310 1 2042 81 33 0 chr5 17257867 17258138 -185827394 + AluSc SINE Alu 8 287 -22 1290 177 52 30 chr5 17258155 17258426 -185827106 + AluJo SINE Alu 1 277 -35 2302 100 0 0 chr5 17258427 17258738 -185826794 - AluSx SINE Alu -1 311 1 5643 208 52 16 chr5 17258785 17260006 -185825526 + L1M4b LINE L1 90 1353 -5506 1026 225 66 68 chr5 17260029 17260510 -185825022 + LTR10B LTR ERV1 17 542 -4 862 198 5 11 chr5 17260528 17260715 -185824817 + L1M4b LINE L1 1349 1534 -5325 2237 96 0 0 chr5 17260715 17261016 -185824516 + AluY SINE Alu 1 301 -10 240 266 21 21 chr5 17261041 17261135 -185824397 + L1M4b LINE L1 2630 2723 -4415 304 255 6 89 chr5 17261152 17261309 -185824223 + L1MEc LINE L1 1762 1905 -4491 1878 147 3 0 chr5 17261400 17261692 -185823840 - AluSx SINE Alu -19 293 1 327 283 144 29 chr5 17261692 17261865 -185823667 + L1MEc LINE L1 1928 2120 -4097 2206 86 3 49 chr5 17262317 17262644 -185822888 + AluSp SINE Alu 1 312 -1 1932 141 0 26 chr5 17263468 17263780 -185821752 - AluSx SINE Alu -8 304 1 307 223 0 108 chr5 17264034 17264173 -185821359 - L1MEd LINE L1 -4865 1254 1131 1002 216 126 48 chr5 17264394 17264751 -185820781 - L1ME2 LINE L1 -16 6148 5764 231 349 167 19 chr5 17264896 17265154 -185820378 + L2 LINE L2 2954 3249 -23 377 305 0 11 chr5 17266266 17266361 -185819171 - MIR SINE MIR -66 142 49 633 269 13 118 chr5 17267679 17267984 -185817548 + MLT1J LTR MaLR 156 428 -83 218 274 0 0 chr5 17268484 17268535 -185816997 + GA-rich Low_complexity Low_complexity 4 54 0 189 0 0 0 chr5 17268546 17268567 -185816965 + (AATAG)n Simple_repeat Simple_repeat 2 22 0 2209 121 3 16 chr5 17268759 17269073 -185816459 + MER1B DNA MER1_type 30 339 0 734 224 12 47 chr5 17269073 17269243 -185816289 - MIR SINE MIR -64 198 35 479 254 25 25 chr5 17269341 17269463 -185816069 + L2 LINE L2 3191 3312 -1 282 198 136 25 chr5 17269684 17269765 -185815767 - MIR SINE MIR -50 212 123 775 250 135 56 chr5 17269987 17270513 -185815019 - MLT1G1 LTR MaLR -38 529 1 1993 116 11 0 chr5 17270964 17271296 -185814236 - AluSc SINE Alu 0 309 6 3187 153 9 22 chr5 17272126 17272663 -185812869 - LTR26B LTR ERV1 0 531 2 1879 227 74 16 chr5 17272799 17273208 -185812324 - MLT2B2 LTR ERVL -2 513 70 2479 62 0 0 chr5 17273208 17273516 -185812016 - AluY SINE Alu -3 308 1 1879 227 74 16 chr5 17273516 17273591 -185811941 - MLT2B2 LTR ERVL -445 70 1 393 318 26 0 chr5 17273652 17273803 -185811729 + MIR SINE MIR 98 252 -10 2134 105 0 0 chr5 17273834 17274141 -185811391 + AluSq SINE Alu 1 307 0 436 229 28 28 chr5 17274530 17274639 -185810893 - L2 LINE L2 -1 3312 3204 313 257 176 20 chr5 17274639 17274787 -185810745 - MARNA DNA Mariner -208 378 208 247 253 44 66 chr5 17274916 17275007 -185810525 - L1ME4a LINE L1 -73 6048 5960 423 309 16 0 chr5 17275203 17275326 -185810206 - MARNA DNA Mariner -393 193 69 1822 157 3 10 chr5 17277410 17277709 -185807823 + AluSx SINE Alu 3 299 -13 1016 194 144 19 chr5 17278200 17278355 -185807177 - AluJo SINE Alu -10 302 168 297 0 0 0 chr5 17278355 17278388 -185807144 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1016 194 144 19 chr5 17278388 17278495 -185807037 - AluJo SINE Alu -144 168 7 649 236 176 5 chr5 17278999 17279198 -185806334 - LTR16A LTR ERVL -193 257 25 1947 130 0 13 chr5 17279478 17279614 -185805918 + AluSx SINE Alu 1 137 -175 2126 112 3 0 chr5 17279614 17279910 -185805622 + AluSq SINE Alu 1 297 -16 1947 130 0 13 chr5 17279910 17280074 -185805458 + AluSx SINE Alu 137 297 -15 426 345 130 25 chr5 17280195 17280801 -185804731 - L2 LINE L2 -641 2673 2004 230 244 12 24 chr5 17281309 17281391 -185804141 - L2 LINE L2 -1442 1872 1792 2223 89 7 0 chr5 17281722 17282015 -185803517 + AluSp SINE Alu 1 295 -18 408 207 189 9 chr5 17282106 17282223 -185803309 - MLT1I LTR MaLR 0 446 277 403 194 61 31 chr5 17282318 17282416 -185803116 - MLT1J2 LTR MaLR -331 119 19 2305 89 0 6 chr5 17282621 17282935 -185802597 - AluSq SINE Alu 0 313 2 214 209 93 0 chr5 17283019 17283062 -185802470 + L2 LINE L2 3257 3303 -10 197 289 87 87 chr5 17283577 17283681 -185801851 - L2 LINE L2 -9 3304 3201 1911 106 40 0 chr5 17284113 17284416 -185801116 - AluSq SINE Alu 0 314 1 531 291 115 0 chr5 17284758 17284940 -185800592 - MIR SINE MIR -56 206 4 582 104 0 0 chr5 17285102 17285198 -185800334 + (TCCA)n Simple_repeat Simple_repeat 3 98 0 820 258 50 50 chr5 17287710 17287970 -185797562 - MIR SINE MIR 0 262 3 1596 202 0 0 chr5 17288005 17288307 -185797225 - AluJo SINE Alu -10 302 1 1968 120 31 0 chr5 17288370 17288661 -185796871 - AluSx SINE Alu -12 300 1 700 290 34 0 chr5 17289090 17289297 -185796235 + LTR33 LTR ERVL 1 214 -307 3986 171 23 32 chr5 17289899 17290010 -185795522 - L1MB7 LINE L1 -11 6173 6063 2156 96 0 0 chr5 17290010 17290290 -185795242 - AluSx SINE Alu -24 288 9 3986 171 23 32 chr5 17290290 17290662 -185794870 - L1MB7 LINE L1 -121 6063 5697 1621 161 12 43 chr5 17290662 17290984 -185794548 + AluJo SINE Alu 1 312 0 3986 171 23 32 chr5 17290984 17291319 -185794213 - L1MB7 LINE L1 -487 5697 5361 252 297 0 0 chr5 17291329 17291393 -185794139 - MER46C DNA MER2_type -3 335 272 2383 121 19 16 chr5 17292460 17292833 -185792699 + THE1C LTR MaLR 1 374 -1 335 217 0 0 chr5 17293113 17293173 -185792359 - MIR SINE MIR -107 101 42 818 293 111 40 chr5 17293842 17294043 -185791489 + L2 LINE L2 2771 2956 -357 2178 112 0 0 chr5 17294043 17294338 -185791194 - AluSx SINE Alu -16 296 2 818 293 111 40 chr5 17294338 17294636 -185790896 + L2 LINE L2 2956 3313 0 860 196 33 0 chr5 17294840 17294993 -185790539 - FRAM SINE Alu -5 161 4 231 167 0 0 chr5 17295548 17295590 -185789942 + (CA)n Simple_repeat Simple_repeat 2 43 0 2214 87 0 3 chr5 17296748 17297057 -185788475 - AluY SINE Alu -3 308 1 2253 62 31 0 chr5 17297059 17297349 -185788183 - AluSc SINE Alu -10 299 1 6530 168 28 54 chr5 17297921 17299352 -185786180 - L1MC3 LINE L1 -2 7783 6390 32 0 0 0 chr5 17300438 17300470 -185785062 + GC_rich Low_complexity Low_complexity 1 32 0 203 157 61 43 chr5 17300479 17300594 -185784938 + (CGCGG)n Simple_repeat Simple_repeat 5 121 0 * 234 296 0 0 chr5 17300573 17300671 -185784861 + (CCG)n Simple_repeat Simple_repeat 1 98 0 25 51 0 0 chr5 17301451 17301490 -185784042 + GC_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr5 17301778 17301799 -185783733 + (CGG)n Simple_repeat Simple_repeat 2 22 0 387 283 99 81 chr5 17303355 17303638 -185781894 + L3 LINE CR1 1286 1573 -4 279 352 62 25 chr5 17304038 17304200 -185781332 - MIR3 SINE MIR -31 177 10 701 219 113 42 chr5 17307052 17307290 -185778242 + L1ME1 LINE L1 5862 6116 -50 234 149 64 0 chr5 17307507 17307554 -185777978 + L1ME LINE L1 5388 5437 -684 381 75 0 0 chr5 17308242 17308295 -185777237 + (TG)n Simple_repeat Simple_repeat 2 54 0 186 43 0 0 chr5 17309175 17309198 -185776334 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2248 82 0 7 chr5 17309229 17309540 -185775992 - AluSg1 SINE Alu 0 312 4 5877 202 71 44 chr5 17312065 17313601 -185771931 - L1MC4 LINE L1 -76 7966 6390 915 164 0 4 chr5 17314254 17314499 -185771033 + CT-rich Low_complexity Low_complexity 1 244 0 1742 176 17 10 chr5 17314511 17314807 -185770725 - AluJb SINE Alu -14 298 1 2294 96 0 0 chr5 17315064 17315357 -185770175 + AluSc SINE Alu 1 293 -16 252 204 23 102 chr5 17315381 17315469 -185770063 + L1MB7 LINE L1 5996 6076 -108 1784 167 3 22 chr5 17315469 17315787 -185769745 + AluJo SINE Alu 1 312 0 241 271 102 8 chr5 17315844 17315962 -185769570 - MIR SINE MIR -56 206 78 2253 87 20 13 chr5 17316486 17316785 -185768747 - AluSc SINE Alu -8 301 1 2031 124 21 0 chr5 17317835 17318126 -185767406 - AluSx SINE Alu -15 297 1 273 258 96 107 chr5 17318524 17318658 -185766874 - MER5A DNA MER1_type -2 187 43 1450 216 28 0 chr5 17318658 17318940 -185766592 - AluJo SINE Alu -22 290 1 273 258 96 107 chr5 17318940 17318983 -185766549 - MER5A DNA MER1_type -146 43 1 1805 114 51 89 chr5 17319722 17319921 -185765611 - AluSg SINE Alu -6 304 120 2678 87 5 23 chr5 17319921 17320310 -185765222 - L1PA8 LINE L1 -3 6169 5788 1805 114 51 89 chr5 17320310 17320426 -185765106 - AluSg SINE Alu -190 120 1 2632 142 47 2 chr5 17322041 17322484 -185763048 - L1PA16 LINE L1 0 6166 5704 185 229 0 0 chr5 17323527 17323562 -185761970 + MIR SINE MIR 218 252 -10 183 129 0 0 chr5 17326147 17326178 -185759354 + (T)n Simple_repeat Simple_repeat 1 31 0 201 74 0 0 chr5 17326958 17326985 -185758547 + (GGGAGA)n Simple_repeat Simple_repeat 1 27 0 215 255 0 0 chr5 17327385 17327432 -185758100 - L2 LINE L2 -2 3270 3224 2017 125 16 0 chr5 17327449 17327754 -185757778 - AluSx SINE Alu -2 310 1 2383 121 19 16 chr5 17328903 17329276 -185756256 - THE1C LTR MaLR -1 374 1 250 297 0 0 chr5 17330343 17330407 -185755125 + MER46C DNA MER2_type 272 335 -3 4024 171 23 32 chr5 17330417 17330752 -185754780 + L1MB7 LINE L1 5361 5697 -487 1700 171 12 40 chr5 17330752 17331073 -185754459 - AluJo SINE Alu 0 312 1 4024 171 23 32 chr5 17331073 17331445 -185754087 + L1MB7 LINE L1 5697 6063 -121 2282 96 0 0 chr5 17331445 17331725 -185753807 + AluSx SINE Alu 9 288 -24 4024 171 23 32 chr5 17331725 17331836 -185753696 + L1MB7 LINE L1 6063 6173 -11 677 290 34 0 chr5 17332438 17332645 -185752887 - LTR33 LTR ERVL -307 214 1 2067 117 31 7 chr5 17333074 17333365 -185752167 + AluSx SINE Alu 1 298 -14 1701 201 0 0 chr5 17333428 17333727 -185751805 + AluJo SINE Alu 1 299 -13 732 225 58 5 chr5 17333768 17333959 -185751573 + MIR SINE MIR 6 206 -56 582 104 0 0 chr5 17336537 17336633 -185748899 + (TGGA)n Simple_repeat Simple_repeat 3 98 0 483 295 109 0 chr5 17336795 17336978 -185748554 + MIR SINE MIR 4 206 -56 2355 69 31 0 chr5 17337321 17337611 -185747921 + AluSc SINE Alu 1 299 -10 2332 87 0 3 chr5 17337613 17337922 -185747610 + AluY SINE Alu 1 308 -3 231 167 0 0 chr5 17339082 17339124 -185746408 + (TG)n Simple_repeat Simple_repeat 2 43 0 857 196 33 0 chr5 17339679 17339832 -185745700 + FRAM SINE Alu 4 161 -5 657 291 111 40 chr5 17340036 17340334 -185745198 - L2 LINE L2 0 3313 2956 2307 112 0 0 chr5 17340334 17340629 -185744903 + AluSx SINE Alu 2 296 -16 657 291 111 40 chr5 17340629 17340830 -185744702 - L2 LINE L2 -357 2956 2771 226 234 0 0 chr5 17341499 17341546 -185743986 + MIR SINE MIR 42 88 -120 24 0 0 29 chr5 17342460 17342479 -185743053 + AT_rich Low_complexity Low_complexity 1 20 -14 2135 120 3 7 chr5 17342479 17342771 -185742761 - AluSx SINE Alu -21 291 1 24 0 0 29 chr5 17342771 17342786 -185742746 + AT_rich Low_complexity Low_complexity 20 34 0 1117 187 53 78 chr5 17342794 17342931 -185742601 - AluJo SINE Alu -35 277 149 2227 103 10 0 chr5 17342931 17343231 -185742301 - AluSq SINE Alu -10 303 1 1117 187 53 78 chr5 17343231 17343377 -185742155 - AluJo SINE Alu -163 149 1 2511 58 3 0 chr5 17343657 17343949 -185741583 - AluY SINE Alu -18 293 1 287 232 167 51 chr5 17346118 17346256 -185739276 + Charlie1 DNA MER1_type 1419 1572 -1189 198 0 0 0 chr5 17348550 17348572 -185736960 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 236 307 109 0 chr5 17348799 17348936 -185736596 - MIR SINE MIR -27 235 84 600 213 89 6 chr5 17349566 17349735 -185735797 + L1MC5 LINE L1 7720 7902 -59 1914 133 151 34 chr5 17350800 17351183 -185734349 + MSTA LTR MaLR 1 428 0 208 314 85 8 chr5 17353245 17353363 -185732169 - MIR SINE MIR -36 226 100 189 0 0 0 chr5 17354982 17355003 -185730529 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 397 242 40 16 chr5 17355075 17355199 -185730333 + L2 LINE L2 3114 3240 -73 219 186 0 0 chr5 17356319 17356362 -185729170 + (TA)n Simple_repeat Simple_repeat 1 43 0 226 125 54 0 chr5 17356363 17356419 -185729113 - L1MCa LINE L1 -4362 2064 2006 267 157 0 0 chr5 17356424 17356475 -185729057 + (TA)n Simple_repeat Simple_repeat 2 52 0 249 262 70 66 chr5 17356529 17356773 -185728759 + L1MC4a LINE L1 5786 6030 -1778 2512 241 143 51 chr5 17357177 17358482 -185727050 + L1MC5 LINE L1 6512 7925 -36 721 176 171 9 chr5 17358643 17358851 -185726681 - MLT1A1 LTR MaLR -125 249 1 813 176 149 0 chr5 17359200 17359388 -185726144 + L1MB7 LINE L1 5953 6168 -16 299 239 145 8 chr5 17362655 17362772 -185722760 + L1ME LINE L1 85 217 -5853 478 223 10 114 chr5 17362817 17363010 -185722522 + L1ME LINE L1 438 610 -5460 250 303 53 0 chr5 17365912 17365988 -185719544 + L2 LINE L2 3223 3302 -11 1522 158 19 15 chr5 17366012 17366278 -185719254 + AluSx SINE Alu 41 307 -5 192 135 0 0 chr5 17366279 17366316 -185719216 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 21 82 0 0 chr5 17366876 17366925 -185718607 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr5 17367793 17367821 -185717711 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr5 17368145 17368180 -185717352 + AT_rich Low_complexity Low_complexity 1 35 0 212 260 0 0 chr5 17368554 17368604 -185716928 + (CATA)n Simple_repeat Simple_repeat 3 52 0 250 306 20 10 chr5 17374253 17374351 -185711181 + MIR SINE MIR 45 143 -119 259 250 56 69 chr5 17375781 17375925 -185709607 - L1ME3 LINE L1 -66 6096 5955 2278 163 60 8 chr5 17375926 17376326 -185709206 + MSTB LTR MaLR 1 421 -5 538 262 74 37 chr5 17376403 17376445 -185709087 - L1ME3 LINE L1 -222 5948 5909 2187 143 37 8 chr5 17376445 17376796 -185708736 + MER46B DNA MER2_type 1 236 0 538 262 74 37 chr5 17376796 17376997 -185708535 - L1ME3 LINE L1 -261 5909 5696 1556 81 61 0 chr5 17377936 17378134 -185707398 + AluSg/x SINE Alu 72 281 -29 291 200 46 15 chr5 17378151 17378216 -185707316 - Charlie1b DNA MER1_type -46 477 411 1514 229 98 10 chr5 17378246 17378644 -185706888 - Charlie1b DNA MER1_type -90 433 1 1469 152 65 14 chr5 17378692 17378969 -185706563 + AluJb SINE Alu 1 291 -21 304 303 138 0 chr5 17381379 17381488 -185704044 + MIR SINE MIR 90 213 -49 291 274 69 10 chr5 17383276 17383378 -185702154 + L2 LINE L2 3155 3262 -10 203 323 62 8 chr5 17383458 17383588 -185701944 + MIR SINE MIR 96 232 -30 2357 96 0 0 chr5 17384248 17384549 -185700983 - AluSg SINE Alu -9 301 1 1038 186 10 29 chr5 17389542 17389746 -185695786 + AluJo SINE Alu 87 286 -26 731 283 68 0 chr5 17390123 17390342 -185695190 + MIR SINE MIR 7 240 -22 22 0 0 0 chr5 17390663 17390685 -185694847 + AT_rich Low_complexity Low_complexity 1 22 0 277 289 134 43 chr5 17392628 17392815 -185692717 + MIR SINE MIR 11 214 -48 261 295 50 58 chr5 17393381 17393520 -185692012 - MIR SINE MIR -89 173 36 1214 176 8 64 chr5 17394983 17395233 -185690299 + MER46A DNA MER2_type 1 236 0 835 200 126 33 chr5 17395423 17395638 -185689894 + L1MB8 LINE L1 5939 6173 -5 842 143 0 16 chr5 17396372 17396498 -185689034 + FLAM_C SINE Alu 5 128 -5 24 0 0 0 chr5 17396498 17396522 -185689010 + AT_rich Low_complexity Low_complexity 1 24 0 193 371 63 25 chr5 17396805 17396964 -185688568 - MIR SINE MIR -64 198 34 28 86 0 0 chr5 17397354 17397424 -185688108 + AT_rich Low_complexity Low_complexity 1 70 0 1455 186 39 39 chr5 17398240 17398552 -185686980 + AluJo SINE Alu 1 312 0 603 150 42 58 chr5 17398578 17398698 -185686834 + AluJo SINE Alu 87 204 -108 1779 163 0 30 chr5 17398828 17399129 -185686403 - AluJb SINE Alu -16 296 5 237 231 333 8 chr5 17399735 17399852 -185685680 - L2 LINE L2 0 3313 3159 383 237 86 20 chr5 17400156 17400308 -185685224 + MIR SINE MIR 65 226 -36 254 247 34 45 chr5 17401313 17401402 -185684130 - MIR SINE MIR -36 226 139 260 156 0 0 chr5 17401874 17401919 -185683613 + MER20B DNA MER1_type 43 87 -696 318 26 0 0 chr5 17401956 17401995 -185683537 + (CA)n Simple_repeat Simple_repeat 2 40 0 607 256 43 6 chr5 17402072 17402236 -185683296 + MER20B DNA MER1_type 288 457 -326 482 222 141 65 chr5 17402918 17403103 -185682429 + MER58A DNA MER1_type 9 207 -17 24 32 0 0 chr5 17403214 17403245 -185682287 + AT_rich Low_complexity Low_complexity 1 31 0 1021 78 0 0 chr5 17403437 17403565 -185681967 - AluSg/x SINE Alu -6 306 179 1436 185 114 81 chr5 17406467 17407041 -185678491 + MLT1E1 LTR MaLR 2 641 -13 204 236 67 34 chr5 17407341 17407430 -185678102 - MIR3 SINE MIR -36 172 81 36 23 0 0 chr5 17408027 17408070 -185677462 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr5 17408163 17408188 -185677344 + AT_rich Low_complexity Low_complexity 1 25 0 187 238 0 0 chr5 17409132 17409174 -185676358 - MIR3 SINE MIR -5 203 162 330 286 34 25 chr5 17409645 17409659 -185675873 + MER5A DNA MER1_type 3 17 -172 246 308 128 15 chr5 17409659 17409792 -185675740 - MER5A DNA MER1_type -2 187 40 334 203 0 0 chr5 17409940 17410004 -185675528 + MER112 DNA MER1_type 4 67 -193 14371 116 50 25 chr5 17410007 17412295 -185673237 - Tigger1 DNA MER2_type -19 2399 55 210 143 0 0 chr5 17412296 17412331 -185673201 + (GAA)n Simple_repeat Simple_repeat 2 36 0 269 212 68 76 chr5 17412403 17412521 -185673011 + MER112 DNA MER1_type 79 195 -65 260 290 97 11 chr5 17412615 17412708 -185672824 - MER5A DNA MER1_type -63 126 26 305 247 75 0 chr5 17415390 17415483 -185670049 + MIR SINE MIR 7 106 -156 788 262 104 9 chr5 17416226 17416447 -185669085 - MIR SINE MIR -9 253 12 246 333 56 0 chr5 17416741 17416831 -185668701 - MIR3 SINE MIR -6 202 108 259 192 10 40 chr5 17418962 17419061 -185666471 + (TA)n Simple_repeat Simple_repeat 2 97 0 213 193 18 35 chr5 17419091 17419148 -185666384 + GA-rich Low_complexity Low_complexity 5 60 0 1598 156 6 95 chr5 17420198 17420524 -185665008 - AluJo SINE Alu -15 297 1 21 36 0 0 chr5 17420734 17420762 -185664770 + AT_rich Low_complexity Low_complexity 1 28 0 255 303 11 22 chr5 17421384 17421473 -185664059 + G-rich Low_complexity Low_complexity 5 92 0 180 77 0 0 chr5 17421724 17421750 -185663782 + (CAA)n Simple_repeat Simple_repeat 2 27 0 262 221 151 0 chr5 17423180 17423266 -185662266 + MIR SINE MIR 72 170 -92 1126 214 148 28 chr5 17423434 17423793 -185661739 - MER57B LTR ERV1 -32 402 1 3295 194 57 16 chr5 17423794 17424621 -185660911 - L1ME1 LINE L1 -122 6044 5195 180 0 0 0 chr5 17424621 17424641 -185660891 + (TC)n Simple_repeat Simple_repeat 2 21 0 866 178 0 33 chr5 17424641 17424793 -185660739 - FRAM SINE Alu -30 146 1 335 122 10 31 chr5 17424795 17424893 -185660639 + (TG)n Simple_repeat Simple_repeat 2 97 0 418 129 12 59 chr5 17424921 17425091 -185660441 + (TG)n Simple_repeat Simple_repeat 1 162 0 782 147 17 0 chr5 17425091 17425207 -185660325 - FLAM_C SINE Alu -23 120 3 585 232 138 6 chr5 17425209 17425390 -185660142 - L1ME1 LINE L1 -950 5196 4992 1552 189 10 7 chr5 17425996 17426298 -185659234 + AluJb SINE Alu 1 303 -9 2037 134 3 7 chr5 17426323 17426622 -185658910 + AluSx SINE Alu 1 298 -14 606 212 35 24 chr5 17427415 17427585 -185657947 - MIR SINE MIR -5 257 86 443 307 98 16 chr5 17429031 17429275 -185656257 - MARNA DNA Mariner -95 491 228 269 232 53 53 chr5 17429281 17429376 -185656156 - MLT1H LTR MaLR -1 548 454 26 50 0 0 chr5 17429386 17429426 -185656106 + AT_rich Low_complexity Low_complexity 1 40 0 1809 142 14 142 chr5 17429437 17429854 -185655678 - THE1B LTR MaLR 0 364 1 1229 67 6 39 chr5 17429923 17430101 -185655431 + MER30 DNA MER1_type 1 172 -58 2189 53 15 0 chr5 17430214 17430479 -185655053 - L1PA4 LINE L1 0 6155 5887 2452 77 3 6 chr5 17431054 17431367 -185654165 - AluSp SINE Alu -1 312 1 341 288 97 45 chr5 17431780 17432068 -185653464 - L2 LINE L2 0 3313 3011 1700 124 158 0 chr5 17433124 17433389 -185652143 - AluSx SINE Alu -5 307 1 222 243 27 40 chr5 17433877 17433951 -185651581 + MIR3 SINE MIR 135 207 -1 279 257 134 37 chr5 17434049 17434236 -185651296 + L1ME4a LINE L1 5850 6054 -67 2420 202 58 22 chr5 17434255 17434756 -185650776 + LTR40a LTR ERVL 1 519 0 265 246 0 18 chr5 17434783 17434840 -185650692 + LTR67 LTR ERVL 499 554 -3 181 282 14 14 chr5 17434965 17435036 -185650496 - L2 LINE L2 -20 3252 3182 309 191 174 61 chr5 17435580 17435695 -185649837 + MIR SINE MIR 19 146 -116 2366 92 0 7 chr5 17435901 17436206 -185649326 - AluSx SINE Alu -9 303 1 3125 224 87 50 chr5 17436492 17437561 -185647971 + L1MC4 LINE L1 6935 8042 0 1501 152 0 69 chr5 17439809 17440098 -185645434 + AluJb SINE Alu 40 308 -4 407 103 15 44 chr5 17440788 17440856 -185644676 - AluJo SINE Alu -11 301 236 939 190 11 17 chr5 17440857 17441031 -185644501 - AluJo SINE Alu -139 173 1 1734 151 31 17 chr5 17442321 17442613 -185642919 + AluJo SINE Alu 2 297 -15 549 211 99 14 chr5 17443885 17444027 -185641505 + MIR SINE MIR 1 154 -108 2135 138 0 0 chr5 17445464 17445768 -185639764 + AluSx SINE Alu 1 304 -8 409 312 59 15 chr5 17450151 17450353 -185635179 + L3 LINE CR1 667 877 -700 1735 164 15 0 chr5 17451517 17451785 -185633747 - AluJo SINE Alu -40 272 1 2275 91 0 28 chr5 17452211 17452530 -185633002 - AluSx SINE Alu 0 312 3 1246 154 133 87 chr5 17452606 17452892 -185632640 + AluJb SINE Alu 1 299 -3 22 0 0 0 chr5 17452901 17452923 -185632609 + AT_rich Low_complexity Low_complexity 1 22 0 420 320 31 0 chr5 17453711 17453839 -185631693 - MER94 DNA DNA -2 132 1 1372 161 88 19 chr5 17455598 17455859 -185629673 + AluJb SINE Alu 1 279 -33 2391 65 3 0 chr5 17455861 17456151 -185629381 - AluY SINE Alu -20 291 1 708 156 0 74 chr5 17456183 17456318 -185629214 - FLAM_C SINE Alu -7 126 2 476 92 0 40 chr5 17457032 17457108 -185628424 + L1PA8 LINE L1 6094 6166 -6 1106 216 151 26 chr5 17457191 17457576 -185627956 - Charlie4a DNA MER1_type -37 471 39 2041 97 38 60 chr5 17458829 17459148 -185626384 + AluSx SINE Alu 1 312 0 315 278 68 30 chr5 17460230 17460363 -185625169 + L1MC4 LINE L1 7904 8041 -1 1887 125 16 0 chr5 17461536 17461839 -185623693 + AluSx SINE Alu 1 308 -4 203 204 114 0 chr5 17461856 17461900 -185623632 + L2 LINE L2 3224 3272 0 201 74 0 0 chr5 17462300 17462327 -185623205 + (TCTCCC)n Simple_repeat Simple_repeat 1 27 0 202 229 0 0 chr5 17465697 17465732 -185619800 - MIR SINE MIR -10 252 218 2622 142 47 2 chr5 17466773 17467216 -185618316 + L1PA16 LINE L1 5704 6166 0 1805 114 53 37 chr5 17468831 17468947 -185616585 + AluSg SINE Alu 1 114 -196 2797 88 0 13 chr5 17468947 17469324 -185616208 + L1PA8 LINE L1 5788 6159 -13 197 33 33 0 chr5 17469329 17469359 -185616173 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1805 114 53 37 chr5 17469359 17469535 -185615997 + AluSg SINE Alu 117 304 -6 319 258 96 107 chr5 17470273 17470316 -185615216 + MER5B DNA MER1_type 1 43 -135 1352 216 28 0 chr5 17470316 17470598 -185614934 + AluJo SINE Alu 1 290 -22 319 258 96 107 chr5 17470598 17470732 -185614800 + MER5B DNA MER1_type 43 176 -2 1908 124 21 0 chr5 17471130 17471421 -185614111 + AluSx SINE Alu 1 297 -15 2113 90 20 13 chr5 17472470 17472769 -185612763 + AluSc SINE Alu 1 301 -8 299 272 99 7 chr5 17473280 17473417 -185612115 + MIR SINE MIR 64 213 -49 1737 168 3 16 chr5 17473468 17473784 -185611748 - AluJo SINE Alu 0 312 1 248 204 23 102 chr5 17473784 17473872 -185611660 - L1MB7 LINE L1 -108 6076 5996 2171 96 0 0 chr5 17473896 17474189 -185611343 - AluSc SINE Alu -16 293 1 1624 170 17 10 chr5 17474443 17474731 -185610801 + AluJb SINE Alu 1 290 -22 954 144 0 0 chr5 17474731 17474911 -185610621 + (GA)n Simple_repeat Simple_repeat 1 180 0 537 185 0 0 chr5 17474912 17475031 -185610501 + GA-rich Low_complexity Low_complexity 2 120 0 5639 201 78 43 chr5 17475684 17477208 -185608324 + L1MC4 LINE L1 6390 7966 -76 2124 82 0 7 chr5 17479716 17480027 -185605505 + AluSg1 SINE Alu 4 312 0 186 43 0 0 chr5 17480058 17480081 -185605451 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 363 78 0 0 chr5 17480961 17481012 -185604520 + (CA)n Simple_repeat Simple_repeat 2 52 0 233 149 64 0 chr5 17481700 17481747 -185603785 - L1ME LINE L1 -684 5437 5388 710 214 168 32 chr5 17481914 17482202 -185603330 - L1ME1 LINE L1 -50 6116 5862 279 352 62 25 chr5 17485055 17485217 -185600315 + MIR3 SINE MIR 10 177 -31 387 283 99 81 chr5 17485617 17485900 -185599632 - L3 LINE CR1 -4 1573 1286 189 0 0 0 chr5 17487456 17487477 -185598055 + (CCG)n Simple_repeat Simple_repeat 2 22 0 25 51 0 0 chr5 17487765 17487804 -185597728 + GC_rich Low_complexity Low_complexity 1 39 0 234 296 0 0 chr5 17488583 17488681 -185596851 + (CGG)n Simple_repeat Simple_repeat 1 98 0 203 157 61 43 chr5 17488660 17488775 -185596757 + (CCGCG)n Simple_repeat Simple_repeat 5 121 0 * 32 0 0 0 chr5 17488784 17488816 -185596716 + GC_rich Low_complexity Low_complexity 1 32 0 6515 168 28 54 chr5 17489902 17491333 -185594199 + L1MC3 LINE L1 6390 7783 -2 2336 60 30 0 chr5 17491905 17492205 -185593327 + AluSc SINE Alu 1 309 0 2190 91 0 3 chr5 17492213 17492522 -185593010 + AluY SINE Alu 1 308 -3 231 167 0 0 chr5 17493680 17493722 -185591810 + (TG)n Simple_repeat Simple_repeat 2 43 0 845 199 33 0 chr5 17494277 17494428 -185591104 + FRAM SINE Alu 4 159 -7 812 293 111 40 chr5 17494632 17494930 -185590602 - L2 LINE L2 0 3313 2956 2178 112 0 0 chr5 17494930 17495225 -185590307 + AluSx SINE Alu 2 296 -16 812 293 111 40 chr5 17495225 17495426 -185590106 - L2 LINE L2 -357 2956 2771 334 217 0 0 chr5 17496095 17496155 -185589377 + MIR SINE MIR 42 101 -107 2383 121 19 16 chr5 17496435 17496808 -185588724 - THE1C LTR MaLR -1 374 1 252 297 0 0 chr5 17497875 17497939 -185587593 + MER46C DNA MER2_type 272 335 -3 3945 171 23 35 chr5 17497949 17498287 -185587245 + L1MB7 LINE L1 5361 5702 -482 1612 166 12 44 chr5 17498287 17498607 -185586925 - AluJo SINE Alu -2 310 1 3945 171 23 35 chr5 17498607 17498979 -185586553 + L1MB7 LINE L1 5702 6062 -122 2140 100 0 0 chr5 17498979 17499259 -185586273 + AluSx SINE Alu 9 288 -24 3945 171 23 35 chr5 17499259 17499370 -185586162 + L1MB7 LINE L1 6062 6173 -11 700 290 34 0 chr5 17499972 17500179 -185585353 - LTR33 LTR ERVL -307 214 1 1968 120 31 0 chr5 17500608 17500899 -185584633 + AluSx SINE Alu 1 300 -12 1542 209 0 0 chr5 17500962 17501264 -185584268 + AluJo SINE Alu 1 302 -10 820 258 50 50 chr5 17501299 17501559 -185583973 + MIR SINE MIR 3 262 0 546 109 0 0 chr5 17504071 17504163 -185581369 + (TGGA)n Simple_repeat Simple_repeat 3 94 0 554 295 109 0 chr5 17504325 17504508 -185581024 + MIR SINE MIR 4 206 -56 1912 106 40 0 chr5 17504851 17505159 -185580373 + AluSq SINE Alu 1 319 0 197 289 87 87 chr5 17505591 17505695 -185579837 + L2 LINE L2 3201 3304 -9 214 209 93 0 chr5 17506210 17506253 -185579279 - L2 LINE L2 -10 3303 3257 2270 93 0 6 chr5 17506337 17506650 -185578882 + AluSq SINE Alu 2 312 -1 403 194 61 31 chr5 17506855 17506953 -185578579 + MLT1J2 LTR MaLR 19 119 -331 408 207 189 9 chr5 17507048 17507165 -185578367 + MLT1I LTR MaLR 277 446 0 2208 92 7 0 chr5 17507256 17507549 -185577983 - AluSp SINE Alu -18 295 1 230 244 12 24 chr5 17507880 17507962 -185577570 + L2 LINE L2 1792 1872 -1442 432 343 130 25 chr5 17508470 17509076 -185576456 + L2 LINE L2 2004 2673 -641 1947 130 0 13 chr5 17509197 17509361 -185576171 - AluSx SINE Alu -15 297 132 2149 108 3 0 chr5 17509361 17509658 -185575874 - AluSq SINE Alu -15 298 1 1947 130 0 13 chr5 17509658 17509728 -185575804 - AluSx SINE Alu -179 133 2 487 92 0 0 chr5 17509728 17509793 -185575739 - AluS SINE Alu -247 66 2 649 236 176 5 chr5 17510074 17510273 -185575259 + LTR16A LTR ERVL 25 257 -193 1116 194 144 19 chr5 17510776 17510883 -185574649 + AluJo SINE Alu 7 99 -213 378 0 0 0 chr5 17510883 17510925 -185574607 + (TAA)n Simple_repeat Simple_repeat 1 42 0 1116 194 144 19 chr5 17510925 17511080 -185574452 + AluJo SINE Alu 99 302 -10 1941 157 3 10 chr5 17511570 17511869 -185573663 - AluSx SINE Alu -13 299 3 439 303 15 8 chr5 17513945 17514077 -185571455 + MARNA DNA Mariner 61 193 -393 284 231 44 66 chr5 17514273 17514364 -185571168 + L1ME4a LINE L1 5960 6048 -73 323 257 176 20 chr5 17514493 17514641 -185570891 + MARNA DNA Mariner 208 378 -208 389 229 28 28 chr5 17514641 17514750 -185570782 + L2 LINE L2 3204 3312 -1 2257 105 0 0 chr5 17515139 17515446 -185570086 - AluSq SINE Alu 0 307 1 320 318 26 0 chr5 17515477 17515628 -185569904 - MIR SINE MIR -10 252 98 1332 223 62 101 chr5 17515689 17515764 -185569768 + MLT2B2 LTR ERVL 1 77 -438 2400 70 0 0 chr5 17515764 17516049 -185569483 + AluY SINE Alu 1 285 -26 1332 223 62 101 chr5 17516049 17516507 -185569025 + MLT2B2 LTR ERVL 77 513 -2 2869 150 13 42 chr5 17516643 17517189 -185568343 + LTR26B LTR ERV1 2 531 0 2112 103 11 0 chr5 17518021 17518340 -185567192 + AluSc SINE Alu 6 327 0 750 251 135 59 chr5 17518804 17519331 -185566201 + MLT1G1 LTR MaLR 1 529 -38 248 198 136 25 chr5 17519553 17519634 -185565898 + MIR SINE MIR 123 212 -50 427 254 25 25 chr5 17519854 17519976 -185565556 - L2 LINE L2 -1 3312 3191 1609 156 6 95 chr5 17520760 17521086 -185564446 - AluJo SINE Alu -15 297 1 22 35 0 0 chr5 17521296 17521325 -185564207 + AT_rich Low_complexity Low_complexity 1 29 0 255 303 11 22 chr5 17521947 17522036 -185563496 + G-rich Low_complexity Low_complexity 5 92 0 180 77 0 0 chr5 17522287 17522313 -185563219 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1873 181 36 0 chr5 17523331 17523667 -185561865 - MER7A DNA MER2_type 0 346 1 2416 73 0 0 chr5 17524810 17525096 -185560436 + AluSx SINE Alu 15 300 -12 190 312 167 22 chr5 17525974 17526112 -185559420 + MIR3 SINE MIR 17 174 -34 21 36 0 0 chr5 17527761 17527789 -185557743 + AT_rich Low_complexity Low_complexity 1 28 0 2713 107 0 3 chr5 17528869 17529234 -185556298 + THE1B LTR MaLR 1 364 0 542 261 113 15 chr5 17530639 17530842 -185554690 - MIR SINE MIR -12 250 28 594 287 143 0 chr5 17533374 17533597 -185551935 - MIR SINE MIR -2 260 6 2282 272 123 26 chr5 17534619 17535743 -185549789 - L1MC4 LINE L1 0 7808 6613 750 200 7 5 chr5 17535747 17536316 -185549216 + (TCCA)n Simple_repeat Simple_repeat 1 570 0 349 251 6 12 chr5 17536390 17536553 -185548979 + (CCCA)n Simple_repeat Simple_repeat 2 163 0 588 249 80 24 chr5 17536553 17536766 -185548766 - L1MC4 LINE L1 -1355 6687 6463 183 273 0 0 chr5 17537180 17537224 -185548308 - L2 LINE L2 -22 3250 3207 319 269 9 19 chr5 17537257 17537365 -185548167 + T-rich Low_complexity Low_complexity 3 109 0 2159 116 0 10 chr5 17538156 17538450 -185547082 - AluSx SINE Alu -21 291 1 22 0 0 0 chr5 17540051 17540073 -185545459 + AT_rich Low_complexity Low_complexity 1 22 0 292 218 85 128 chr5 17541189 17541377 -185544155 - MER3 DNA MER1_type 0 209 30 244 274 66 28 chr5 17545233 17545339 -185540193 + MER5A DNA MER1_type 23 132 -57 1211 131 0 0 chr5 17547829 17547997 -185537535 - AluSg/x SINE Alu -13 299 132 2167 100 50 13 chr5 17547997 17548162 -185537370 - AluSx SINE Alu 0 312 130 2273 107 0 3 chr5 17548162 17548462 -185537070 - AluSx SINE Alu -13 299 1 2167 100 50 13 chr5 17548462 17548597 -185536935 - AluSx SINE Alu -182 130 1 232 250 15 15 chr5 17549882 17549950 -185535582 + (CA)n Simple_repeat Simple_repeat 1 68 0 22 35 0 0 chr5 17550168 17550197 -185535335 + AT_rich Low_complexity Low_complexity 1 29 0 2420 67 0 10 chr5 17550756 17551055 -185534477 + AluSc SINE Alu 1 296 -13 1153 295 45 22 chr5 17551673 17552181 -185533351 + MER20B DNA MER1_type 264 783 0 662 271 92 75 chr5 17552305 17552759 -185532773 + MLT1J LTR MaLR 1 462 -49 1484 95 128 128 chr5 17655422 17655663 -185429869 + L1MCa LINE L1 1706 1946 -4480 2161 115 0 3 chr5 17655663 17655975 -185429557 - AluY SINE Alu 0 311 1 1484 95 128 128 chr5 17655975 17655996 -185429536 + L1MCa LINE L1 1946 1966 -4460 2002 124 13 19 chr5 17655996 17656310 -185429222 - AluSx SINE Alu 0 312 1 1484 95 128 128 chr5 17656310 17656437 -185429095 + L1MCa LINE L1 1965 2096 -4330 986 279 182 21 chr5 17657686 17658170 -185427362 - L2 LINE L2 -386 2928 2367 712 161 42 14 chr5 17658341 17658484 -185427048 + Charlie4 DNA MER1_type 1815 1961 0 1826 186 0 3 chr5 17658507 17658814 -185426718 - LOR1a LTR ERV1 0 497 192 2644 105 32 2 chr5 17658814 17659214 -185426318 + LOR1-int LTR ERV1 2946 3357 -4763 745 193 50 22 chr5 17659226 17659407 -185426125 + LOR1a LTR ERV1 266 451 -46 273 98 0 0 chr5 17659708 17659749 -185425783 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 225 0 0 0 chr5 17659875 17659900 -185425632 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 2211 181 78 71 chr5 17660276 17660811 -185424721 - MLT1F LTR MaLR 0 542 4 433 0 35 0 chr5 17661099 17661156 -185424376 + (TG)n Simple_repeat Simple_repeat 2 60 0 374 212 10 0 chr5 17661974 17662073 -185423459 + CT-rich Low_complexity Low_complexity 4 103 0 304 301 24 48 chr5 17662316 17662482 -185423050 + LTR16A LTR ERVL 1 162 -288 1214 167 20 80 chr5 17662673 17662972 -185422560 - LTR55 LTR ERV -266 282 2 2361 87 0 13 chr5 17662990 17663299 -185422233 - AluSg SINE Alu -5 305 1 327 365 0 0 chr5 17663638 17663745 -185421787 + L2 LINE L2 3182 3288 -25 279 0 0 0 chr5 17663746 17663777 -185421755 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 243 94 0 94 chr5 17664115 17664168 -185421364 - L1MA10 LINE L1 -2 6332 6285 680 174 14 7 chr5 17664171 17664235 -185421297 - MLT1A1 LTR MaLR 0 365 303 2272 98 6 16 chr5 17664235 17664551 -185420981 + AluSq SINE Alu 1 313 0 680 174 14 7 chr5 17664551 17664624 -185420908 - MLT1A1 LTR MaLR -62 303 227 439 188 20 30 chr5 17664823 17664924 -185420608 - MLT1A1 LTR MaLR -265 100 1 351 109 0 31 chr5 17664924 17664988 -185420544 - L1MA10 LINE L1 -48 6286 6225 242 194 16 16 chr5 17665249 17665311 -185420221 - L1P LINE L1 -948 5198 5137 1701 136 40 48 chr5 17665488 17665864 -185419668 - L1MA8 LINE L1 -10 6281 5909 1922 190 16 13 chr5 17665866 17666250 -185419282 - MSTD LTR MaLR -11 385 1 3729 151 35 0 chr5 17666250 17667305 -185418227 - L1MA8 LINE L1 -379 5912 4825 209 222 0 0 chr5 17667905 17667950 -185417582 + (TTA)n Simple_repeat Simple_repeat 2 46 0 848 242 123 89 chr5 17667954 17668491 -185417041 - MLT1L LTR MaLR -56 559 5 21 57 0 0 chr5 17668782 17668817 -185416715 + AT_rich Low_complexity Low_complexity 1 35 0 345 264 68 47 chr5 17670111 17670259 -185415273 - MIR SINE MIR -38 224 74 234 0 0 0 chr5 17671213 17671239 -185414293 + (A)n Simple_repeat Simple_repeat 1 26 0 334 173 0 25 chr5 17671606 17671687 -185413845 - Charlie4 DNA MER1_type -1829 132 54 6295 92 6 0 chr5 17671869 17672775 -185412757 - L1P LINE L1 -1751 4395 3485 7057 54 6 6 chr5 17672778 17673754 -185411778 + L1PA8 LINE L1 5184 6159 -13 215 266 138 18 chr5 17673913 17674022 -185411510 - MIR SINE MIR 0 262 141 498 223 84 9 chr5 17674152 17674395 -185411137 + MER33 DNA MER1_type 1 361 -2 403 338 136 26 chr5 17674403 17674456 -185411076 - L2 LINE L2 -4 3309 3263 2080 161 64 5 chr5 17674456 17674860 -185410672 - MSTA LTR MaLR 0 428 1 403 338 136 26 chr5 17674860 17675152 -185410380 - L2 LINE L2 -50 3263 2926 400 204 57 70 chr5 17676814 17676971 -185408561 - Charlie4 DNA MER1_type 0 1961 1807 6319 165 46 19 chr5 17676971 17678312 -185407220 + L1MCa LINE L1 1 1377 -5049 34406 88 17 17 chr5 17678416 17683757 -185401775 + L1P LINE L1 50 5393 -753 182 271 51 34 chr5 17683918 17683977 -185401555 + MIR3 SINE MIR 118 177 -31 24 0 0 0 chr5 17684039 17684063 -185401469 + AT_rich Low_complexity Low_complexity 1 24 0 3586 134 4 9 chr5 17684491 17685021 -185400511 - MER1A DNA MER1_type 0 527 1 210 301 68 80 chr5 17685145 17685321 -185400211 + L3b LINE CR1 1322 1495 -88 222 37 0 0 chr5 17685322 17685349 -185400183 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 218 254 91 0 chr5 17685666 17685721 -185399811 + L3 LINE CR1 1425 1484 -93 233 179 12 0 chr5 17685868 17685952 -185399580 + (CA)n Simple_repeat Simple_repeat 1 85 0 528 221 8 25 chr5 17687174 17687296 -185398236 + MER94 DNA DNA 3 122 -12 22 0 0 0 chr5 17689204 17689226 -185396306 + AT_rich Low_complexity Low_complexity 1 22 0 734 189 47 21 chr5 17689538 17689728 -185395804 - MER20 DNA MER1_type -7 212 18 3789 155 138 7 chr5 17689814 17690544 -185394988 + LTR1B LTR ERV1 1 826 0 200 215 46 15 chr5 17690632 17690697 -185394835 - L3b LINE CR1 -197 1386 1320 273 330 146 0 chr5 17692176 17692279 -185393253 - L2 LINE L2 -5 3308 3191 1057 224 149 17 chr5 17692617 17693019 -185392513 + L1MC4 LINE L1 7438 7892 -150 1797 173 35 3 chr5 17693064 17693406 -185392126 - MLT2C2 LTR ERVL -111 353 1 283 311 74 7 chr5 17693452 17693587 -185391945 - L2 LINE L2 -924 2390 2247 313 278 20 80 chr5 17693906 17693992 -185391540 + MIR SINE MIR 65 140 -122 2428 103 0 0 chr5 17693992 17694304 -185391228 + AluSq SINE Alu 1 312 -1 313 278 20 80 chr5 17694304 17694368 -185391164 + MIR SINE MIR 140 206 -56 2494 64 0 0 chr5 17694432 17694729 -185390803 + AluY SINE Alu 1 297 -14 509 182 101 0 chr5 17695430 17695529 -185390003 - L2 LINE L2 -4 3309 3201 180 371 57 0 chr5 17695538 17695608 -185389924 - L2 LINE L2 -10 3262 3189 3410 169 12 2 chr5 17695738 17696342 -185389190 - MER72 LTR ERV1 -22 700 91 25 0 0 0 chr5 17696726 17696751 -185388781 + AT_rich Low_complexity Low_complexity 1 25 0 180 77 0 0 chr5 17696889 17696915 -185388617 + (CA)n Simple_repeat Simple_repeat 2 27 0 328 410 87 3 chr5 17696945 17697255 -185388277 - L2 LINE L2 -512 2802 2467 197 274 53 95 chr5 17698367 17698462 -185387070 - MER5A DNA MER1_type -7 182 92 308 344 91 82 chr5 17700024 17700364 -185385168 - L2 LINE L2 -105 3167 2825 595 325 68 37 chr5 17701140 17701598 -185383934 - L1MEd LINE L1 -5204 915 444 442 328 45 76 chr5 17701691 17702048 -185383484 - L1MEd LINE L1 -5770 349 4 204 300 33 0 chr5 17703313 17703373 -185382159 + MIR SINE MIR 9 70 -192 2088 175 8 3 chr5 17703401 17703784 -185381748 + MLT1B LTR MaLR 6 390 0 2043 144 73 52 chr5 17703828 17703888 -185381644 - MSTB1 LTR MaLR 0 432 375 2358 98 0 3 chr5 17703888 17704194 -185381338 - AluY SINE Alu -6 305 1 2043 144 73 52 chr5 17704194 17704556 -185380976 - MSTB1 LTR MaLR -57 375 1 2700 23 0 0 chr5 17704576 17704876 -185380656 + AluYb8 SINE Alu 1 300 -18 246 32 0 0 chr5 17704876 17704907 -185380625 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 21 36 0 0 chr5 17705013 17705041 -185380491 + AT_rich Low_complexity Low_complexity 1 28 0 2078 155 0 0 chr5 17708882 17709185 -185376347 + AluSx SINE Alu 1 303 -9 2074 84 77 0 chr5 17709495 17709781 -185375751 + AluY SINE Alu 1 308 -3 1738 157 43 6 chr5 17709805 17710156 -185375376 - Tigger1 DNA MER2_type 0 2418 2055 5421 58 29 7 chr5 17710161 17710920 -185374612 - L1PA6 LINE L1 0 6154 5379 507 272 136 17 chr5 17711218 17711519 -185374013 + MER46C DNA MER2_type 2 338 0 266 267 147 42 chr5 17711631 17711822 -185373710 - MIR SINE MIR -32 230 20 1945 211 25 25 chr5 17711937 17712453 -185373079 + Charlie1b DNA MER1_type 7 522 -1 743 270 109 0 chr5 17712453 17712664 -185372868 + MIR SINE MIR 8 241 -21 456 146 109 88 chr5 17713574 17713711 -185371821 + MIR SINE MIR 79 218 -44 807 244 218 36 chr5 17713797 17714296 -185371236 - MLT1G LTR MaLR 0 590 1 1989 117 39 0 chr5 17714462 17714745 -185370787 + AluSx SINE Alu 1 294 -18 364 266 16 14 chr5 17715123 17715260 -185370272 - MLT1J LTR MaLR -291 194 21 23 33 0 0 chr5 17715276 17715306 -185370226 + AT_rich Low_complexity Low_complexity 1 30 0 2125 104 0 0 chr5 17715870 17716138 -185369394 + AluSx SINE Alu 35 302 -10 231 197 171 13 chr5 17716173 17716249 -185369283 + MIR SINE MIR 82 169 -93 2494 75 0 0 chr5 17716548 17716853 -185368679 - AluY SINE Alu -6 305 1 463 90 0 0 chr5 17717018 17717085 -185368447 + L1MA2 LINE L1 6234 6300 -4 1799 164 3 10 chr5 17717732 17718030 -185367502 + AluJo SINE Alu 1 296 -16 193 248 227 43 chr5 17718769 17718910 -185366622 - MIR SINE MIR -18 244 78 293 259 137 33 chr5 17720480 17720692 -185364840 - MIR SINE MIR -28 234 1 395 63 16 0 chr5 17721536 17721599 -185363933 + (TA)n Simple_repeat Simple_repeat 2 65 0 1277 147 43 5 chr5 17721706 17721917 -185363615 + MER20 DNA MER1_type 1 219 0 2528 66 0 3 chr5 17722202 17722507 -185363025 + AluY SINE Alu 1 304 -7 763 224 36 18 chr5 17722644 17722863 -185362669 + MER58A DNA MER1_type 2 224 0 192 282 0 115 chr5 17722935 17723013 -185362519 + MER5A DNA MER1_type 1 69 -120 12329 107 17 19 chr5 17723941 17725837 -185359695 + HERVH LTR ERV1 641 2532 -5181 1050 169 0 0 chr5 17725829 17726007 -185359525 + HERVH LTR ERV1 2810 2987 -4726 * 914 130 20 0 chr5 17726001 17726147 -185359385 + HERVH LTR ERV1 3140 3288 -4425 * 3411 113 4 8 chr5 17726139 17726642 -185358890 + HERVH LTR ERV1 3492 3992 -3721 4502 135 0 3 chr5 17726645 17727306 -185358226 + HERVH LTR ERV1 4488 5146 -2567 1352 126 17 42 chr5 17727289 17727527 -185358005 + HERVH LTR ERV1 5588 5819 -1894 * 2397 96 53 13 chr5 17727525 17727902 -185357630 + HERVH LTR ERV1 7322 7713 0 2858 71 95 5 chr5 17727902 17728313 -185357219 + LTR7 LTR ERV1 1 448 -2 629 245 37 0 chr5 17729147 17729310 -185356222 - MIR SINE MIR -38 224 56 587 189 79 31 chr5 17730175 17730302 -185355230 + FLAM_A SINE Alu 1 133 0 252 0 0 0 chr5 17731023 17731051 -185354481 + (CCCCAG)n Simple_repeat Simple_repeat 4 31 0 232 264 0 42 chr5 17731144 17731216 -185354316 - MIR SINE MIR -19 243 175 851 265 111 21 chr5 17731586 17731911 -185353621 + L1MC5 LINE L1 5537 5890 -1918 23 54 0 0 chr5 17732173 17732210 -185353322 + AT_rich Low_complexity Low_complexity 1 37 0 1555 171 30 23 chr5 17732220 17732519 -185353013 + AluJb SINE Alu 1 301 -11 1973 108 90 4 chr5 17732525 17732802 -185352730 + AluSx SINE Alu 1 301 -11 2133 172 6 6 chr5 17733133 17733494 -185352038 + MLT2D LTR ERVL 1 361 -53 294 148 0 0 chr5 17733495 17733549 -185351983 + (GA)n Simple_repeat Simple_repeat 2 55 0 265 93 70 0 chr5 17733549 17733592 -185351940 + MLT2D LTR ERVL 419 464 0 216 351 92 30 chr5 17733680 17733811 -185351721 + L2 LINE L2 3128 3266 -6 246 250 92 0 chr5 17735212 17735288 -185350244 + L1ME LINE L1 5590 5672 -449 * 354 231 137 53 chr5 17735281 17735580 -185349952 + L1MC5 LINE L1 6778 7101 -860 540 274 147 5 chr5 17735737 17735934 -185349598 + LTR16A LTR ERVL 212 436 -14 2671 275 83 40 chr5 17735950 17736693 -185348839 + HERV16 LTR ERVL 3 813 -4183 1107 229 5 0 chr5 17736693 17736911 -185348621 + MER58A DNA MER1_type 3 221 -3 2671 275 83 40 chr5 17736911 17737301 -185348231 + HERV16 LTR ERVL 813 1185 -3811 1833 148 63 27 chr5 17737302 17737634 -185347898 - MER2 DNA MER2_type 0 344 1 3323 155 55 0 chr5 17737636 17738177 -185347355 + Tigger7 DNA MER2_type 1 571 -162 676 123 9 44 chr5 17738171 17738285 -185347247 + Tigger7 DNA MER2_type 2382 2491 0 * 519 312 13 0 chr5 17738285 17738442 -185347090 + HERV16 LTR ERVL 1185 1343 -3653 455 325 21 11 chr5 17738507 17738698 -185346834 + HERV16 LTR ERVL 1375 1567 -3429 1471 304 73 21 chr5 17738715 17739413 -185346119 + HERV16 LTR ERVL 1705 2486 -2716 866 356 6 6 chr5 17739421 17739764 -185345768 + HERVL LTR ERVL 4198 4540 -1114 4648 122 87 65 chr5 17739838 17741276 -185344256 - pTR5 LTR ERV1 0 2438 66 1899 112 19 0 chr5 17741371 17741639 -185343893 + AluSx SINE Alu 1 273 -39 371 267 80 17 chr5 17741652 17741828 -185343704 + HERVL LTR ERVL 4785 4971 -793 704 286 41 15 chr5 17742394 17742660 -185342872 + LTR16A LTR ERVL 173 445 -5 1358 206 85 135 chr5 17743614 17743768 -185341764 - L1MC5 LINE L1 -36 7925 7765 408 55 0 0 chr5 17743768 17743823 -185341709 + (CA)n Simple_repeat Simple_repeat 1 55 0 1358 206 85 135 chr5 17743823 17744876 -185340656 - L1MC5 LINE L1 -196 7765 6778 248 232 101 0 chr5 17744869 17744938 -185340594 - L1ME LINE L1 -449 5672 5597 * 596 209 139 11 chr5 17746557 17746744 -185338788 - Charlie1a DNA MER1_type 0 1455 1245 973 189 51 108 chr5 17746745 17747079 -185338453 + L1MA7 LINE L1 5997 6311 -1 4033 196 21 33 chr5 17747265 17748201 -185337331 - Charlie1a DNA MER1_type -337 1118 194 1133 223 64 63 chr5 17748269 17748691 -185336841 - MER39 LTR ERV1 -88 619 9 622 246 11 44 chr5 17748718 17748901 -185336631 - Charlie1a DNA MER1_type -1275 180 4 280 119 0 2 chr5 17749022 17749072 -185336460 - L1ME LINE L1 -652 5522 5474 25 31 0 0 chr5 17749073 17749105 -185336427 + AT_rich Low_complexity Low_complexity 1 32 0 216 244 139 12 chr5 17750625 17750711 -185334821 + MIR SINE MIR 58 154 -108 202 284 12 37 chr5 17750787 17750868 -185334664 - L2 LINE L2 -86 3186 3108 411 21 0 0 chr5 17751162 17751210 -185334322 + (CA)n Simple_repeat Simple_repeat 1 48 0 1746 206 23 3 chr5 17751210 17751564 -185333968 + MLT1A1 LTR MaLR 2 362 -3 234 0 0 0 chr5 17751564 17751590 -185333942 + (CA)n Simple_repeat Simple_repeat 2 27 0 2155 119 3 6 chr5 17752049 17752360 -185333172 + AluSx SINE Alu 2 311 -1 210 37 0 0 chr5 17754907 17754934 -185330598 + (TG)n Simple_repeat Simple_repeat 1 27 0 273 301 24 0 chr5 17755527 17755610 -185329922 - L2 LINE L2 -4 3309 3225 2258 109 3 10 chr5 17755615 17755926 -185329606 + AluSx SINE Alu 1 309 -3 212 266 0 0 chr5 17755969 17756033 -185329499 - L2 LINE L2 -83 3230 3167 797 294 12 8 chr5 17756054 17756299 -185329233 + MIR SINE MIR 8 253 -9 300 298 105 5 chr5 17756316 17756648 -185328884 - L2 LINE L2 -167 3146 2781 498 271 54 12 chr5 17757418 17757584 -185327948 - MER5B DNA MER1_type 0 178 6 481 202 101 17 chr5 17757909 17758028 -185327504 - L2 LINE L2 -3 3310 3182 798 259 79 40 chr5 17758137 17758558 -185326974 + LTR33 LTR ERVL 49 518 -3 285 276 0 0 chr5 17759419 17759477 -185326055 - MER81 DNA DNA -2 112 55 206 247 236 0 chr5 17760156 17760245 -185325287 - MER5B DNA MER1_type -7 171 62 1113 64 0 14 chr5 17760274 17760415 -185325117 - Alu SINE Alu -7 304 166 220 236 69 0 chr5 17760544 17760616 -185324916 - MIR3 SINE MIR -19 189 113 182 150 25 0 chr5 17761252 17761292 -185324240 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 348 127 0 0 chr5 17761807 17761862 -185323670 + (TA)n Simple_repeat Simple_repeat 1 55 0 261 152 0 0 chr5 17761864 17761910 -185323622 - LTR66 LTR ERVL -171 439 394 367 242 0 22 chr5 17762822 17762913 -185322619 - L2 LINE L2 -6 3266 3178 462 311 8 0 chr5 17762982 17763114 -185322418 - L2 LINE L2 -252 3061 2929 2531 261 211 29 chr5 17763891 17764125 -185321407 + L2 LINE L2 601 791 -2523 2334 113 0 0 chr5 17764125 17764425 -185321107 - AluSx SINE Alu -12 300 1 2531 261 211 29 chr5 17764425 17765566 -185319966 + L2 LINE L2 791 2208 -1106 1028 132 19 6 chr5 17765671 17765830 -185319702 - AluJb SINE Alu -151 161 1 2292 180 92 29 chr5 17765831 17766436 -185319096 + L1MCa LINE L1 1926 2608 -3999 1777 177 14 3 chr5 17766436 17766730 -185318802 + AluJb SINE Alu 1 297 -15 2292 180 92 29 chr5 17766730 17766850 -185318682 + L1MCa LINE L1 2608 2719 -3888 653 117 48 19 chr5 17766852 17766955 -185318577 + AluSx SINE Alu 3 108 -205 471 70 0 0 chr5 17766980 17767051 -185318481 + L1MC1 LINE L1 1926 1996 -4430 1476 116 14 0 chr5 17767051 17767258 -185318274 + AluSx SINE Alu 86 295 -15 7766 203 86 18 chr5 17767258 17769145 -185316387 + L1MC1 LINE L1 2672 4429 -2184 1091 214 78 42 chr5 17769145 17769477 -185316055 + MER2 DNA MER2_type 1 344 0 7766 203 86 18 chr5 17769477 17771252 -185314280 + L1MC1 LINE L1 4429 6600 -13 22 35 0 0 chr5 17771252 17771281 -185314251 + AT_rich Low_complexity Low_complexity 1 29 0 1013 188 79 4 chr5 17771287 17771553 -185313979 - Charlie4a DNA MER1_type -153 355 70 41126 33 21 1 chr5 17771565 17777595 -185307937 + L1PA2 LINE L1 2 6155 0 272 221 44 0 chr5 17777600 17777668 -185307864 - Charlie4a DNA MER1_type -421 87 17 1745 178 45 31 chr5 17777896 17778255 -185307277 + MLT1A1 LTR MaLR 1 364 -1 263 234 32 32 chr5 17778661 17778755 -185306777 + MLT1I LTR MaLR 291 384 -25 1195 200 39 60 chr5 17779077 17779446 -185306086 + MLT1A2 LTR MaLR 11 374 0 550 303 144 5 chr5 17779675 17779870 -185305662 - MIR SINE MIR -25 237 16 2070 82 3 55 chr5 17780040 17780370 -185305162 - L1PA13 LINE L1 -2 6161 5849 256 139 292 14 chr5 17780451 17780523 -185305009 + MER39 LTR ERV1 1 92 -615 478 165 91 0 chr5 17780533 17780654 -185304878 + LTR48 LTR ERV1 177 308 -479 516 234 98 61 chr5 17780663 17780997 -185304535 + LTR48 LTR ERV1 238 774 0 531 298 88 0 chr5 17781077 17781292 -185304240 - L2 LINE L2 0 3313 3080 3939 148 21 27 chr5 17781486 17782201 -185303331 - MER50 LTR ERV1 -23 711 1 1162 214 132 82 chr5 17782641 17782973 -185302559 + MLT1E2 LTR MaLR 111 477 -149 2351 99 3 0 chr5 17782973 17783285 -185302247 - AluSp SINE Alu 0 313 1 1162 214 132 82 chr5 17783285 17783443 -185302089 + MLT1E2 LTR MaLR 477 626 0 315 49 0 0 chr5 17784237 17784278 -185301254 + (TTAGGG)n Simple_repeat Simple_repeat 3 43 0 1561 177 9 47 chr5 17784490 17784807 -185300725 + AluJo SINE Alu 1 305 -7 202 234 21 0 chr5 17785115 17785162 -185300370 - L2 LINE L2 -8 3264 3217 22 0 0 0 chr5 17785554 17785576 -185299956 + AT_rich Low_complexity Low_complexity 1 22 0 296 260 10 50 chr5 17785587 17785687 -185299845 - L1MEd LINE L1 -5585 534 439 21 0 0 0 chr5 17785837 17785858 -185299674 + AT_rich Low_complexity Low_complexity 1 21 0 863 233 91 24 chr5 17786022 17786352 -185299180 - MER34 LTR ERV1 -45 520 146 240 174 33 76 chr5 17786362 17786454 -185299078 - MER65A LTR ERV1 -2 443 356 347 252 38 15 chr5 17786630 17786761 -185298771 - MER65A LTR ERV1 -311 134 1 445 236 18 9 chr5 17786779 17786889 -185298643 - MER34 LTR ERV1 -431 111 1 1269 226 53 55 chr5 17786924 17787358 -185298174 - LTR47B LTR ERVL 0 443 11 270 0 0 0 chr5 17787369 17787399 -185298133 + (CA)n Simple_repeat Simple_repeat 2 31 0 198 167 0 0 chr5 17787790 17787826 -185297706 + (CA)n Simple_repeat Simple_repeat 1 36 0 2287 89 0 19 chr5 17788079 17788392 -185297140 + AluSx SINE Alu 1 307 -5 260 270 27 14 chr5 17788392 17788466 -185297066 + MER21B LTR ERV1 16 90 -773 468 271 28 40 chr5 17788519 17788696 -185296836 + MER21B LTR ERV1 98 272 -591 5853 144 16 8 chr5 17788699 17789823 -185295709 + L1P LINE L1 4293 5418 -750 4824 132 40 2 chr5 17789938 17790739 -185294793 - Tigger1 DNA MER2_type -1585 833 3 259 219 14 0 chr5 17790741 17790814 -185294718 - MER82 DNA MER2_type -453 200 127 2320 146 24 19 chr5 17790875 17791300 -185294232 - MSTA LTR MaLR 0 428 2 512 275 69 48 chr5 17791328 17791703 -185293829 - L1ME LINE L1 -471 5691 5309 390 291 106 20 chr5 17791908 17792162 -185293370 - L1ME LINE L1 -966 5180 4905 358 207 193 0 chr5 17792177 17792317 -185293215 - L1ME LINE L1 -1497 4649 4483 22 0 0 0 chr5 17792409 17792431 -185293101 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr5 17792468 17792511 -185293021 + AT_rich Low_complexity Low_complexity 1 43 0 226 263 68 17 chr5 17792521 17792639 -185292893 - L1ME LINE L1 -1954 4192 4069 2120 164 53 10 chr5 17794144 17794541 -185290991 - MLT2D LTR ERVL 0 414 1 628 76 0 0 chr5 17794542 17794634 -185290898 + L1PB1 LINE L1 6060 6151 0 2409 71 0 14 chr5 17795207 17795504 -185290028 - AluY SINE Alu -18 293 1 2245 125 0 0 chr5 17795598 17795903 -185289629 - AluSx SINE Alu -7 305 1 217 233 0 0 chr5 17796316 17796359 -185289173 - L2 LINE L2 -2 3311 3269 1063 199 130 51 chr5 17797703 17798034 -185287498 + MLT1A1 LTR MaLR 1 357 -8 433 246 25 34 chr5 17798164 17798310 -185287222 + MIR SINE MIR 27 172 -63 235 274 17 120 chr5 17798513 17798630 -185286902 + MER5B DNA MER1_type 6 110 -68 251 91 0 23 chr5 17799483 17799527 -185286005 + (CA)n Simple_repeat Simple_repeat 2 44 0 183 156 0 0 chr5 17799529 17799561 -185285971 + (TG)n Simple_repeat Simple_repeat 1 32 0 254 335 164 7 chr5 17799756 17799908 -185285624 - MLT1L LTR MaLR -88 527 352 635 249 46 20 chr5 17800502 17800699 -185284833 - MLT1A2 LTR MaLR -16 358 157 586 193 8 0 chr5 17800791 17800910 -185284622 + MER96B DNA MER1_type? 298 417 0 21 71 0 0 chr5 17800978 17801020 -185284512 + AT_rich Low_complexity Low_complexity 1 42 0 302 320 33 53 chr5 17802109 17802259 -185283273 + MIR3 SINE MIR 30 176 -32 1441 224 58 18 chr5 17802545 17803089 -185282443 - MER90 LTR ERV1 0 614 10 733 165 256 6 chr5 17803927 17804091 -185281441 - MER7A DNA MER2_type -143 203 1 960 187 74 37 chr5 17804097 17804396 -185281136 + L1MC5 LINE L1 7601 7910 -51 2149 98 39 0 chr5 17804398 17804683 -185280849 + AluSq SINE Alu 1 296 -17 23 0 0 0 chr5 17804693 17804716 -185280816 + AT_rich Low_complexity Low_complexity 1 23 0 269 305 153 3 chr5 17805026 17805205 -185280327 + MIR SINE MIR 4 262 0 1834 204 22 53 chr5 17805306 17805811 -185279721 - MER65B LTR ERV1 -42 489 1 2150 152 33 35 chr5 17805814 17806243 -185279289 - Tigger2a DNA MER2_type 0 434 7 313 309 72 15 chr5 17806843 17807036 -185278496 - MIR SINE MIR 0 208 5 288 130 0 0 chr5 17807108 17807154 -185278378 + (GA)n Simple_repeat Simple_repeat 1 46 0 25 95 0 0 chr5 17807221 17807295 -185278237 + AT_rich Low_complexity Low_complexity 1 74 0 2441 58 0 35 chr5 17807375 17807685 -185277847 - AluY SINE Alu -12 299 1 2674 76 103 5 chr5 17807872 17808280 -185277252 + LTR7 LTR ERV1 1 448 -2 3857 81 12 7 chr5 17808282 17808864 -185276668 + HERVH LTR ERV1 1 585 -7128 919 153 71 53 chr5 17810162 17810332 -185275200 - AluJb SINE Alu -7 305 133 259 222 181 0 chr5 17811820 17811892 -185273640 + MIR SINE MIR 63 147 -115 606 192 46 91 chr5 17813016 17813235 -185272297 + MER3 DNA MER1_type 1 209 0 1790 239 82 23 chr5 17813321 17814063 -185271469 + L1ME3A LINE L1 5285 6122 -48 1622 151 80 19 chr5 17814063 17814387 -185271145 + MER2 DNA MER2_type 1 344 0 1790 239 82 23 chr5 17814387 17814434 -185271098 + L1ME3A LINE L1 6122 6165 -5 279 233 41 41 chr5 17814501 17814574 -185270958 + MIR SINE MIR 184 256 -6 672 212 0 29 chr5 17814632 17814769 -185270763 - FLAM_A SINE Alu 0 133 1 2200 275 113 20 chr5 17814962 17815989 -185269543 - L2 LINE L2 -70 3243 2119 1627 183 39 3 chr5 17816446 17816731 -185268801 + AluJb SINE Alu 1 295 -17 1619 188 58 50 chr5 17818210 17818571 -185266961 + MLT1A1 LTR MaLR 2 365 0 269 245 53 21 chr5 17818851 17818945 -185266587 - L2 LINE L2 -4 3309 3213 933 215 88 8 chr5 17820432 17820683 -185264849 - MER33 DNA MER1_type -13 311 41 2277 84 0 7 chr5 17820738 17821037 -185264495 + AluSx SINE Alu 1 297 -15 305 300 114 64 chr5 17821177 17821521 -185264011 + L2 LINE L2 2736 3102 -211 1471 215 217 25 chr5 17821531 17821968 -185263564 - MLT1F LTR MaLR 0 542 22 435 228 0 0 chr5 17822025 17822104 -185263428 - MER81 DNA DNA -34 80 2 279 224 214 10 chr5 17822128 17822226 -185263306 + L2 LINE L2 3192 3309 -4 216 0 0 0 chr5 17822907 17822931 -185262601 + (T)n Simple_repeat Simple_repeat 1 24 0 2387 142 83 0 chr5 17823575 17823970 -185261562 + MSTA LTR MaLR 1 428 0 257 251 133 94 chr5 17824693 17824844 -185260688 + MIR SINE MIR 3 160 -48 1705 199 53 3 chr5 17824865 17825187 -185260345 - MER58B DNA MER1_type 0 341 4 395 328 23 0 chr5 17825192 17825323 -185260209 - MIR SINE MIR -66 196 63 216 135 0 0 chr5 17828759 17828796 -185256736 + (T)n Simple_repeat Simple_repeat 1 37 0 250 306 20 10 chr5 17934378 17934476 -185151056 + MIR SINE MIR 45 143 -119 237 257 56 69 chr5 17935906 17936050 -185149482 - L1ME3 LINE L1 -66 6096 5955 2278 163 60 8 chr5 17936051 17936451 -185149081 + MSTB LTR MaLR 1 421 -5 538 262 74 37 chr5 17936528 17936570 -185148962 - L1ME3 LINE L1 -222 5948 5909 2187 143 37 8 chr5 17936570 17936921 -185148611 + MER46B DNA MER2_type 1 236 0 538 262 74 37 chr5 17936921 17937122 -185148410 - L1ME3 LINE L1 -261 5909 5696 339 282 28 7 chr5 17937389 17937531 -185148001 + (CCA)n Simple_repeat Simple_repeat 1 145 0 365 303 148 27 chr5 17941864 17942230 -185143302 + MLT1J LTR MaLR 87 496 -15 234 248 139 20 chr5 17942427 17942528 -185143004 - L2 LINE L2 -15 3257 3145 2359 112 0 0 chr5 17943233 17943545 -185141987 + AluSx SINE Alu 1 312 0 26 50 0 0 chr5 17943545 17943585 -185141947 + AT_rich Low_complexity Low_complexity 1 40 0 2298 60 0 3 chr5 17943937 17944219 -185141313 - AluY SINE Alu -8 303 23 23 0 0 0 chr5 17945139 17945162 -185140370 + AT_rich Low_complexity Low_complexity 1 23 0 247 231 48 115 chr5 17946333 17946437 -185139095 + L2 LINE L2 3164 3260 -12 6965 51 15 12 chr5 17946619 17946933 -185138599 - L1PA7 LINE L1 -20 6134 5822 2426 78 3 7 chr5 17946933 17947240 -185138292 - AluY SINE Alu -5 306 1 6965 51 15 12 chr5 17947240 17947889 -185137643 - L1PA7 LINE L1 -332 5822 5171 671 177 194 16 chr5 17951606 17951792 -185133740 - MER20 DNA MER1_type 0 219 1 365 285 117 46 chr5 17953667 17954018 -185131514 + L2 LINE L2 2856 3231 -82 314 294 65 33 chr5 17954428 17954612 -185130920 - L1MC4a LINE L1 -1838 5970 5781 488 260 96 14 chr5 17954890 17955109 -185130423 - L1ME3 LINE L1 -2302 5506 5270 291 361 17 0 chr5 17955783 17955902 -185129630 - MER5A DNA MER1_type 0 189 69 729 137 29 79 chr5 17956785 17956924 -185128608 - AluJo SINE Alu -140 172 41 568 217 38 0 chr5 17956929 17957035 -185128497 + FRAM SINE Alu 37 146 -30 183 42 0 0 chr5 17957037 17957061 -185128471 + (CA)n Simple_repeat Simple_repeat 2 25 0 252 174 0 45 chr5 17957082 17957138 -185128394 + Alu SINE Alu 245 283 -19 245 225 0 10 chr5 17957182 17957238 -185128294 + FAM SINE Alu 107 158 -17 408 276 74 28 chr5 17957755 17957972 -185127560 + MARNA DNA Mariner 178 404 -182 1971 62 39 0 chr5 17959124 17959381 -185126151 - L1P3 LINE L1 -350 5804 5538 343 252 0 41 chr5 17959629 17959752 -185125780 + G-rich Low_complexity Low_complexity 3 120 0 2350 116 0 0 chr5 17961144 17961455 -185124077 + AluSq SINE Alu 1 311 -2 2251 112 0 13 chr5 17962454 17962767 -185122765 + AluSx SINE Alu 1 309 -3 380 269 111 50 chr5 17963230 17963509 -185122023 + L1MC5 LINE L1 5635 5930 -1878 183 379 29 0 chr5 17963872 17963975 -185121557 + L2 LINE L2 2491 2596 -718 214 175 105 18 chr5 17965017 17965074 -185120458 + MIR SINE MIR 72 133 -129 241 264 132 33 chr5 17965941 17966062 -185119470 + MLT1F1 LTR MaLR 188 320 -247 241 252 78 43 chr5 17966055 17966170 -185119362 + MLT1E LTR MaLR 384 502 -91 * 289 267 38 61 chr5 17966165 17966296 -185119236 - MER58B DNA MER1_type -17 324 197 672 268 0 0 chr5 17966514 17966671 -185118861 - L1MC5 LINE L1 -1169 6792 6636 2133 148 16 47 chr5 17966752 17967138 -185118394 + THE1C LTR MaLR 1 374 -1 873 215 125 81 chr5 17967140 17967549 -185117983 + L1MC5 LINE L1 6807 7233 -728 207 0 0 0 chr5 17967727 17967750 -185117782 + (TC)n Simple_repeat Simple_repeat 1 23 0 656 235 163 45 chr5 17967798 17968062 -185117470 + L1MC5 LINE L1 7308 7540 -421 1952 161 0 3 chr5 17968062 17968361 -185117171 + AluJo SINE Alu 1 298 -14 656 235 163 45 chr5 17968361 17968649 -185116883 + L1MC5 LINE L1 7540 7925 -36 1573 162 96 35 chr5 17968723 17969068 -185116464 - MER47A DNA MER2_type 0 366 1 922 143 0 43 chr5 17969735 17969896 -185115636 + FRAM SINE Alu 22 175 -1 401 238 67 72 chr5 17973968 17974191 -185111341 + MLT1J LTR MaLR 97 318 -193 243 254 0 0 chr5 17976384 17976439 -185109093 + L1MB7 LINE L1 6120 6174 -10 234 182 0 0 chr5 17976463 17976507 -185109025 + L1MC3 LINE L1 6885 6928 -857 2177 121 7 3 chr5 17976703 17977001 -185108531 + AluSx SINE Alu 1 299 -13 2050 122 14 0 chr5 17977888 17978167 -185107365 - AluSq SINE Alu -30 283 1 28 29 0 0 chr5 17978751 17978786 -185106746 + AT_rich Low_complexity Low_complexity 1 35 0 200 267 6 19 chr5 17979912 17980073 -185105459 + GA-rich Low_complexity Low_complexity 1 159 0 21 0 0 0 chr5 17981387 17981408 -185104124 + AT_rich Low_complexity Low_complexity 1 21 0 204 150 50 0 chr5 17981460 17981500 -185104032 + GA-rich Low_complexity Low_complexity 5 46 0 324 221 32 32 chr5 17982884 17982902 -185102630 - L1MA10 LINE L1 -2 6332 6315 2560 235 75 19 chr5 17982902 17983668 -185101864 - L1ME2 LINE L1 -9 6155 5356 245 298 12 12 chr5 17984042 17984126 -185101406 - MIR3 SINE MIR -33 175 92 226 294 87 76 chr5 17984400 17984584 -185100948 + MIR SINE MIR 6 191 -71 506 310 51 0 chr5 17986279 17986437 -185099095 + MIR SINE MIR 11 176 -86 2058 103 45 7 chr5 17986440 17986732 -185098800 + AluSx SINE Alu 1 303 -9 1916 153 0 54 chr5 17988850 17989183 -185096349 + MER1B DNA MER1_type 1 315 -24 2413 114 11 3 chr5 17989922 17990282 -185095250 + L1PA15 LINE L1 5799 6161 -4 419 311 0 22 chr5 17990677 17990860 -185094672 + (CA)n Simple_repeat Simple_repeat 1 179 0 368 333 6 17 chr5 17990886 17991066 -185094466 + (CA)n Simple_repeat Simple_repeat 1 178 0 355 331 0 22 chr5 17991164 17991345 -185094187 + (CA)n Simple_repeat Simple_repeat 2 178 0 205 387 6 12 chr5 17991359 17991527 -185094005 + (CATA)n Simple_repeat Simple_repeat 4 170 0 210 237 34 51 chr5 17993230 17993289 -185092243 - L3 LINE CR1 -1075 502 445 1933 119 78 0 chr5 17994163 17994432 -185091100 + AluSx SINE Alu 1 290 -22 195 212 136 45 chr5 17995489 17995555 -185089977 - MIR SINE MIR -111 151 80 3404 192 30 66 chr5 17996081 17996954 -185088578 + L1MD2 LINE L1 5505 6345 -14 284 222 19 0 chr5 17997008 17997062 -185088470 + Tigger5 DNA MER2_type 1 55 -2268 * 300 156 26 91 chr5 17997033 17997110 -185088422 + Tigger5 DNA MER2_type 2252 2323 0 249 400 39 0 chr5 17998466 17998596 -185086936 - L2 LINE L2 -2 3270 3136 2541 65 0 10 chr5 17999582 17999891 -185085641 - AluY SINE Alu -5 306 1 1120 137 22 22 chr5 18000752 18000934 -185084598 - AluJb SINE Alu -15 297 116 1090 143 22 22 chr5 18001295 18001477 -185084055 - AluJb SINE Alu -15 297 116 193 373 0 0 chr5 18002283 18002358 -185083174 - L2 LINE L2 -562 2752 2678 21 0 0 0 chr5 18003167 18003188 -185082344 + AT_rich Low_complexity Low_complexity 1 21 0 1842 159 6 25 chr5 18004549 18004863 -185080669 - AluJo SINE Alu -4 308 1 592 261 5 59 chr5 18005317 18005503 -185080029 + L1MC4 LINE L1 6457 6633 -1409 180 0 0 0 chr5 18005503 18005523 -185080009 + (CA)n Simple_repeat Simple_repeat 2 21 0 592 261 5 59 chr5 18005523 18005539 -185079993 + L1MC4 LINE L1 6633 6648 -1394 363 222 94 17 chr5 18006374 18006491 -185079041 - MIR SINE MIR -80 182 57 291 280 200 7 chr5 18007678 18007828 -185077704 - MIR SINE MIR -21 241 63 265 293 28 0 chr5 18009109 18009204 -185076328 - MIR SINE MIR -63 145 76 309 215 77 0 chr5 18010494 18010559 -185074973 + Tigger2 DNA MER2_type 2 71 -2647 245 224 103 0 chr5 18010563 18010621 -185074911 - MER2 DNA MER2_type 0 345 282 * 352 246 0 0 chr5 18010598 18010663 -185074869 - MER8 DNA MER2_type -62 177 113 1586 182 75 3 chr5 18010925 18011260 -185074272 - MLT1A1 LTR MaLR -2 363 5 259 282 0 0 chr5 18011747 18011825 -185073707 + MIR SINE MIR 78 155 -107 25 0 0 0 chr5 18012863 18012888 -185072644 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr5 18013052 18013074 -185072458 + AT_rich Low_complexity Low_complexity 1 22 0 2351 106 3 0 chr5 18013080 18013392 -185072140 + AluSq SINE Alu 1 313 0 23 0 0 0 chr5 18013596 18013619 -185071913 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr5 18014867 18014890 -185070642 + (TC)n Simple_repeat Simple_repeat 2 24 0 2294 145 51 12 chr5 18014890 18015303 -185070229 + MSTB1 LTR MaLR 2 430 -2 638 260 92 36 chr5 18015545 18015795 -185069737 + MER46C DNA MER2_type 36 299 -39 182 222 185 0 chr5 18015830 18015884 -185069648 - MIR SINE MIR -109 153 90 184 345 0 0 chr5 18017230 18017285 -185068247 + MIR SINE MIR 97 151 -57 2743 107 0 0 chr5 18018493 18018857 -185066675 - THE1B LTR MaLR 0 364 1 189 307 46 46 chr5 18019184 18019402 -185066130 + L2 LINE L2 2834 3051 -221 21 36 0 0 chr5 18019935 18019963 -185065569 + AT_rich Low_complexity Low_complexity 1 28 0 1275 175 6 86 chr5 18022072 18022397 -185063135 - AluSx SINE Alu -13 299 1 2256 107 0 3 chr5 18022399 18022699 -185062833 - AluSx SINE Alu -13 299 1 1008 105 8 0 chr5 18022701 18022834 -185062698 - AluSq/x SINE Alu -179 134 1 232 250 15 15 chr5 18024119 18024187 -185061345 + (CA)n Simple_repeat Simple_repeat 1 68 0 22 35 0 0 chr5 18024405 18024434 -185061098 + AT_rich Low_complexity Low_complexity 1 29 0 2422 63 0 10 chr5 18024993 18025292 -185060240 + AluSc SINE Alu 1 296 -13 1123 296 54 22 chr5 18025910 18026414 -185059118 + MER20B DNA MER1_type 264 783 0 634 283 91 71 chr5 18026538 18026991 -185058541 + MLT1J LTR MaLR 1 462 -49 2141 116 0 10 chr5 18029558 18029852 -185055680 + AluSx SINE Alu 1 291 -21 319 269 9 19 chr5 18030644 18030752 -185054780 + A-rich Low_complexity Low_complexity 3 109 0 199 273 0 0 chr5 18030785 18030829 -185054703 + L2 LINE L2 3207 3250 -22 599 244 80 24 chr5 18031243 18031456 -185054076 + L1MC4 LINE L1 6463 6687 -1355 349 251 6 12 chr5 18031456 18031619 -185053913 + (TGGG)n Simple_repeat Simple_repeat 2 163 0 820 222 26 6 chr5 18031622 18031940 -185053592 + (TGGA)n Simple_repeat Simple_repeat 1 324 0 601 198 6 16 chr5 18031962 18032144 -185053388 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 693 278 48 39 chr5 18032265 18032710 -185052822 + L1MC4 LINE L1 7386 7808 0 1958 184 36 0 chr5 18033677 18034013 -185051519 - MER7A DNA MER2_type 0 346 1 184 274 39 0 chr5 18034212 18034263 -185051269 - L2 LINE L2 -15 3298 3246 357 250 223 6 chr5 18034521 18034720 -185050812 + MIR SINE MIR 2 230 -32 284 264 66 28 chr5 18035496 18035602 -185049930 - MER5A DNA MER1_type -57 132 23 299 218 85 128 chr5 18039314 18039502 -185046030 + MER3 DNA MER1_type 30 209 0 22 0 0 0 chr5 18040618 18040640 -185044892 + AT_rich Low_complexity Low_complexity 1 22 0 605 261 113 15 chr5 18042219 18042422 -185043110 - MIR SINE MIR -12 250 28 674 283 143 0 chr5 18044955 18045178 -185040354 - MIR SINE MIR -2 260 6 1395 130 4 48 chr5 18045594 18045824 -185039708 - AluJo SINE Alu -9 303 84 235 307 160 20 chr5 18046956 18047106 -185038426 - MIR3 SINE MIR -21 187 17 2463 74 0 0 chr5 18047984 18048280 -185037252 - AluSx SINE Alu -2 310 15 24 0 0 29 chr5 18049924 18049943 -185035589 + AT_rich Low_complexity Low_complexity 1 20 -14 2150 116 3 7 chr5 18049943 18050235 -185035297 - AluSx SINE Alu -21 291 1 24 0 0 29 chr5 18050235 18050250 -185035282 + AT_rich Low_complexity Low_complexity 20 34 0 1105 187 53 78 chr5 18050258 18050395 -185035137 - AluJo SINE Alu -35 277 149 2209 103 10 0 chr5 18050395 18050695 -185034837 - AluSq SINE Alu -10 303 1 1105 187 53 78 chr5 18050695 18050841 -185034691 - AluJo SINE Alu -163 149 1 2476 61 3 0 chr5 18051121 18051414 -185034118 - AluY SINE Alu -17 294 1 285 225 167 51 chr5 18053583 18053721 -185031811 + Charlie1 DNA MER1_type 1419 1572 -1189 198 0 0 0 chr5 18056015 18056037 -185029495 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 271 307 109 0 chr5 18056264 18056401 -185029131 - MIR SINE MIR -27 235 84 612 217 76 14 chr5 18057032 18057239 -185028293 + L1MD3 LINE L1 7720 7993 -2 2000 135 151 39 chr5 18058266 18058651 -185026881 + MSTA LTR MaLR 1 428 0 238 314 85 8 chr5 18060710 18060828 -185024704 - MIR SINE MIR -36 226 100 189 0 0 0 chr5 18062450 18062471 -185023061 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 416 262 35 28 chr5 18062526 18062667 -185022865 + L2 LINE L2 3099 3240 -73 219 186 0 0 chr5 18063787 18063830 -185021702 + (TA)n Simple_repeat Simple_repeat 1 43 0 235 125 54 0 chr5 18063831 18063887 -185021645 - L1MCa LINE L1 -4362 2064 2006 251 140 20 0 chr5 18063892 18063942 -185021590 + (TA)n Simple_repeat Simple_repeat 2 52 0 383 319 49 45 chr5 18063996 18064262 -185021270 + L1MC4a LINE L1 5786 6052 -1756 2512 241 143 51 chr5 18064645 18065950 -185019582 + L1MC5 LINE L1 6512 7925 -36 708 182 171 9 chr5 18066111 18066319 -185019213 - MLT1A1 LTR MaLR -125 249 1 813 176 149 0 chr5 18066668 18066856 -185018676 + L1MB7 LINE L1 5953 6168 -16 307 239 145 8 chr5 18070124 18070241 -185015291 + L1ME LINE L1 85 217 -5853 477 223 10 114 chr5 18070286 18070479 -185015053 + L1ME LINE L1 438 610 -5460 260 303 53 0 chr5 18073450 18073526 -185012006 + L2 LINE L2 3223 3302 -11 1451 158 19 15 chr5 18073550 18073816 -185011716 + AluSx SINE Alu 41 307 -5 192 135 0 0 chr5 18073817 18073854 -185011678 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 21 82 0 0 chr5 18074414 18074463 -185011069 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr5 18075331 18075359 -185010173 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr5 18075683 18075718 -185009814 + AT_rich Low_complexity Low_complexity 1 35 0 212 260 0 0 chr5 18076092 18076142 -185009390 + (CATA)n Simple_repeat Simple_repeat 3 52 0 1510 214 14 103 chr5 18085937 18086530 -184999002 + L1ME LINE L1 2248 2787 -3293 649 178 78 0 chr5 18089339 18089468 -184996064 - FLAM_A SINE Alu -3 139 1 283 308 22 22 chr5 18089521 18089612 -184995920 + L2 LINE L2 3198 3288 -25 998 192 9 57 chr5 18089806 18090035 -184995497 - MER20 DNA MER1_type 0 219 2 1228 182 40 121 chr5 18090302 18090698 -184994834 + MLT1A1 LTR MaLR 1 364 -1 393 212 25 76 chr5 18092632 18092750 -184992782 + MIR3 SINE MIR 66 177 -31 207 0 0 0 chr5 18094380 18094403 -184991129 + (TA)n Simple_repeat Simple_repeat 1 23 0 5202 94 42 7 chr5 18094965 18095697 -184989835 - L1PA7 LINE L1 -13 6141 5384 1301 67 0 0 chr5 18095700 18095864 -184989668 - L1PA4 LINE L1 -3 6152 5989 2009 121 10 0 chr5 18098664 18098961 -184986571 - AluSx SINE Alu -12 300 1 242 306 22 72 chr5 18098962 18099142 -184986390 + MIR3 SINE MIR 36 206 -2 2065 157 48 45 chr5 18100424 18100865 -184984667 - MER65A LTR ERV1 0 445 4 708 218 0 0 chr5 18101335 18101468 -184984064 + FLAM_A SINE Alu 1 133 0 280 250 33 94 chr5 18101767 18101947 -184983585 - L2 LINE L2 0 3313 3145 2298 81 3 0 chr5 18103177 18103484 -184982048 - AluSx SINE Alu -4 308 1 253 351 36 56 chr5 18103768 18104019 -184981513 + L2 LINE L2 2838 3083 -189 426 286 140 12 chr5 18104920 18105091 -184980441 + MIR3 SINE MIR 16 208 0 474 242 11 0 chr5 18105097 18105192 -184980340 + MIR SINE MIR 81 176 -86 545 132 28 0 chr5 18105251 18105357 -184980175 - L1MA8 LINE L1 0 6291 6183 2583 178 36 4 chr5 18105374 18105869 -184979663 - L1MB5 LINE L1 -8 6166 5656 2524 159 28 30 chr5 18107513 18107986 -184977546 + MER70A LTR ERVL 1 472 0 3077 191 46 3 chr5 18107986 18109059 -184976473 + MER70A-int LTR ERVL 1 1191 -3832 1864 186 40 40 chr5 18109080 18109505 -184976027 + MER70A-int LTR ERVL 2387 2811 -2212 * 5461 164 31 41 chr5 18109490 18110222 -184975310 + MER70A-int LTR ERVL 2947 3685 -1338 1996 174 88 8 chr5 18110222 18110618 -184974914 + MSTA LTR MaLR 1 428 0 5461 164 31 41 chr5 18110618 18110820 -184974712 + MER70A-int LTR ERVL 3685 3888 -1135 2173 119 3 0 chr5 18110820 18111131 -184974401 - AluSx SINE Alu 0 312 1 5461 164 31 41 chr5 18111131 18111587 -184973945 + MER70A-int LTR ERVL 3888 4347 -676 963 51 7 15 chr5 18111587 18111724 -184973808 - L1PA4 LINE L1 0 6155 6020 5461 164 31 41 chr5 18111724 18112195 -184973337 + MER70A-int LTR ERVL 4347 4882 -141 2208 209 15 0 chr5 18112195 18112607 -184972925 + MER70A LTR ERVL 55 472 0 2060 92 3 38 chr5 18113053 18113369 -184972163 + AluSp SINE Alu 3 307 -6 217 253 76 38 chr5 18113784 18113863 -184971669 + L2 LINE L2 2412 2493 -821 21 0 0 0 chr5 18118475 18118496 -184967036 + AT_rich Low_complexity Low_complexity 1 21 0 1887 125 17 0 chr5 18118937 18119269 -184966263 - AluSx SINE Alu 0 337 1 1845 181 65 11 chr5 18119952 18120322 -184965210 - MLT1B LTR MaLR 0 390 1 311 297 183 15 chr5 18120380 18120582 -184964950 - MIR SINE MIR -25 237 2 354 281 53 18 chr5 18120618 18120732 -184964800 - MIR3 SINE MIR -77 131 14 21 0 0 0 chr5 18122742 18122763 -184962769 + AT_rich Low_complexity Low_complexity 1 21 0 3788 226 92 29 chr5 18122765 18122992 -184962540 - L1MC4a LINE L1 -5 7803 7592 516 118 53 0 chr5 18122992 18123068 -184962464 + MADE1 DNA Mariner 1 80 0 3788 226 92 29 chr5 18123068 18123347 -184962185 - L1MC4a LINE L1 -216 7592 7332 1676 164 80 22 chr5 18123347 18123671 -184961861 - MER61A LTR ERV1 0 343 1 3788 226 92 29 chr5 18123671 18124266 -184961266 - L1MC4a LINE L1 -476 7332 6631 2118 114 93 32 chr5 18124355 18124698 -184960834 - THE1B LTR MaLR 0 364 1 4204 80 25 6 chr5 18124698 18125248 -184960284 - THE1B-int LTR MaLR 0 1580 1020 694 202 87 149 chr5 18125275 18125690 -184959842 - L1MC4a LINE L1 -1226 6582 6194 1532 190 104 20 chr5 18125729 18126076 -184959456 - MLT1B LTR MaLR -12 378 3 2223 123 20 0 chr5 18127268 18127569 -184957963 - AluSg SINE Alu -3 307 1 192 238 139 30 chr5 18130889 18130990 -184954542 + L3 LINE CR1 1424 1535 -42 309 300 11 0 chr5 18131072 18131162 -184954370 + MIR SINE MIR 65 155 -107 207 200 33 33 chr5 18132776 18132836 -184952696 + MIR SINE MIR 77 136 -126 207 69 0 0 chr5 18134390 18134419 -184951113 + (TCCC)n Simple_repeat Simple_repeat 3 31 0 2094 122 10 7 chr5 18135203 18135507 -184950025 + AluSx SINE Alu 1 305 -7 27 0 0 0 chr5 18135687 18135714 -184949818 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr5 18136369 18136392 -184949140 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 251 295 21 0 chr5 18140669 18140764 -184944768 - MIR SINE MIR -120 142 46 248 311 47 0 chr5 18140808 18140914 -184944618 - L2 LINE L2 -14 3299 3189 201 191 24 0 chr5 18141296 18141338 -184944194 + T-rich Low_complexity Low_complexity 4 46 0 2120 118 17 0 chr5 18142195 18142483 -184943049 - AluSx SINE Alu -19 293 1 229 296 31 31 chr5 18142855 18142953 -184942579 - L2 LINE L2 -2 3270 3173 6500 122 144 125 chr5 18143002 18144679 -184940853 - pTR5 LTR ERV1 0 2438 375 24 0 0 0 chr5 18145628 18145652 -184939880 + GC_rich Low_complexity Low_complexity 1 24 0 321 284 11 0 chr5 18146532 18146627 -184938905 - L2 LINE L2 -24 3289 3194 184 306 14 56 chr5 18147032 18147104 -184938428 + L2 LINE L2 3162 3230 -42 1158 147 11 0 chr5 18147833 18148010 -184937522 + AluSg/x SINE Alu 124 302 -10 2473 84 0 3 chr5 18148157 18148468 -184937064 - AluY SINE Alu -1 310 1 1578 201 194 11 chr5 18154016 18154460 -184931072 - MER77 LTR ERV1 -4 601 77 231 291 35 12 chr5 18154931 18155017 -184930515 - L1ME4a LINE L1 -98 6023 5936 247 273 11 34 chr5 18155068 18155156 -184930376 - L1ME4a LINE L1 -1940 5868 5783 725 202 60 27 chr5 18155173 18155356 -184930176 - MIR SINE MIR -17 245 57 21 0 0 0 chr5 18155360 18155381 -184930151 + AT_rich Low_complexity Low_complexity 1 21 0 1910 140 17 3 chr5 18155786 18156079 -184929453 + AluJo SINE Alu 1 297 -15 261 250 107 6 chr5 18157346 18157514 -184928018 + L1M4 LINE L1 3029 3213 -2933 388 268 27 0 chr5 18160191 18160303 -184925229 + L2 LINE L2 3156 3270 -2 28 48 0 0 chr5 18161158 18161200 -184924332 + AT_rich Low_complexity Low_complexity 1 42 0 278 245 21 43 chr5 18162739 18162833 -184922699 + MIR SINE MIR 153 244 -18 1810 158 3 38 chr5 18162918 18163234 -184922298 - AluJo SINE Alu -7 305 1 23 33 0 0 chr5 18164159 18164189 -184921343 + AT_rich Low_complexity Low_complexity 1 30 0 2298 112 6 6 chr5 18164770 18165082 -184920450 + AluSx SINE Alu 1 312 0 4706 210 96 9 chr5 18165615 18166770 -184918762 - Charlie1a DNA MER1_type -200 1255 1 1548 182 13 48 chr5 18166931 18167244 -184918288 + AluJo SINE Alu 1 302 -10 29 28 0 0 chr5 18167911 18167947 -184917585 + AT_rich Low_complexity Low_complexity 1 36 0 990 176 0 6 chr5 18169072 18169242 -184916290 + FAM SINE Alu 3 171 -4 773 142 0 0 chr5 18169325 18169438 -184916094 + FLAM_A SINE Alu 21 133 -9 222 91 0 0 chr5 18170022 18170055 -184915477 + (T)n Simple_repeat Simple_repeat 1 33 0 228 135 0 0 chr5 18170530 18170567 -184914965 - MER5A DNA MER1_type -152 37 1 203 326 57 46 chr5 18171420 18171595 -184913937 - L2 LINE L2 -39 3274 3098 27 29 0 0 chr5 18172458 18172492 -184913040 + AT_rich Low_complexity Low_complexity 1 34 0 1994 177 55 13 chr5 18172858 18173315 -184912217 - L1MB3 LINE L1 -2 6181 5706 693 321 19 0 chr5 18173617 18173829 -184911703 - MIR SINE MIR -41 221 6 2416 87 0 7 chr5 18173964 18174262 -184911270 + AluSp SINE Alu 1 296 -17 405 205 0 0 chr5 18175760 18175877 -184909655 + (CGG)n Simple_repeat Simple_repeat 3 119 0 27 73 0 0 chr5 18176026 18176081 -184909451 + GC_rich Low_complexity Low_complexity 1 55 0 1938 101 42 49 chr5 18178259 18178546 -184906986 + AluSg SINE Alu 1 285 -25 234 0 0 0 chr5 18181360 18181386 -184904146 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1311 239 30 66 chr5 18181448 18181513 -184904019 - MLT2D LTR ERVL -2 412 346 9452 150 77 92 chr5 18181513 18182880 -184902652 + Tigger1 DNA MER2_type 1 1387 -1031 2130 141 0 0 chr5 18182880 18183179 -184902353 + AluSx SINE Alu 1 299 -13 9452 150 77 92 chr5 18183179 18183950 -184901582 + Tigger1 DNA MER2_type 1387 2101 -317 2236 96 7 7 chr5 18183950 18184242 -184901290 + AluY SINE Alu 1 292 -19 9452 150 77 92 chr5 18184242 18184556 -184900976 + Tigger1 DNA MER2_type 2101 2418 0 1311 239 30 66 chr5 18184556 18184917 -184900615 - MLT2D LTR ERVL -68 346 1 2357 87 3 3 chr5 18188035 18188335 -184897197 + AluY SINE Alu 1 300 -11 1899 145 23 13 chr5 18188875 18189179 -184896353 + AluJb SINE Alu 1 307 -5 22 56 0 0 chr5 18189319 18189355 -184896177 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr5 18189459 18189481 -184896051 + AT_rich Low_complexity Low_complexity 1 22 0 869 237 48 24 chr5 18190466 18190757 -184894775 - MER33 DNA MER1_type 0 324 27 300 301 70 6 chr5 18191098 18191254 -184894278 + MER105 DNA DNA 2 167 -37 433 233 137 9 chr5 18191793 18192012 -184893520 - MLT1H LTR MaLR -230 319 73 335 212 82 0 chr5 18193812 18193897 -184891635 + MER69A DNA AcHobo 32 123 -54 557 287 79 0 chr5 18194679 18194881 -184890651 + MIR SINE MIR 35 252 -10 218 231 0 19 chr5 18194998 18195050 -184890482 - MIR SINE MIR -118 144 94 415 278 11 28 chr5 18199542 18199722 -184885810 + (TGG)n Simple_repeat Simple_repeat 3 179 0 206 302 75 9 chr5 18200778 18200884 -184884648 + MIR SINE MIR 79 191 -71 362 376 18 0 chr5 18201808 18201973 -184883559 + MIR SINE MIR 86 253 -9 1365 254 13 11 chr5 18202675 18203062 -184882470 + MER54A LTR ERVL 472 896 -5 28 48 0 0 chr5 18204148 18204190 -184881342 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr5 18204403 18204433 -184881099 + AT_rich Low_complexity Low_complexity 1 30 0 2510 64 0 3 chr5 18205096 18205394 -184880138 + AluY SINE Alu 8 304 -7 1549 197 10 27 chr5 18207146 18207445 -184878087 - AluJo SINE Alu -18 294 1 2363 119 0 0 chr5 18207512 18207824 -184877708 - AluSx SINE Alu 0 312 1 456 181 43 0 chr5 18208419 18208513 -184877019 + MIR SINE MIR 65 162 -100 320 297 27 18 chr5 18208932 18209043 -184876489 - L2 LINE L2 -1 3312 3201 278 156 0 47 chr5 18210147 18210211 -184875321 - L1MB2 LINE L1 0 6171 6111 196 258 48 32 chr5 18213367 18213429 -184872103 - L2 LINE L2 -5 3267 3205 477 0 0 0 chr5 18216764 18216817 -184868715 + (TTTTA)n Simple_repeat Simple_repeat 2 54 0 2219 114 3 3 chr5 18216853 18217152 -184868380 + AluSx SINE Alu 1 299 -13 690 194 0 0 chr5 18218375 18218499 -184867033 + FLAM_A SINE Alu 1 124 -9 207 0 0 0 chr5 18219456 18219479 -184866053 + (T)n Simple_repeat Simple_repeat 1 23 0 577 170 0 0 chr5 18219497 18219603 -184865929 + FRAM SINE Alu 70 175 -1 2582 173 44 23 chr5 18220589 18221129 -184864403 - L1MB3 LINE L1 -12 6171 5617 1883 181 34 0 chr5 18221129 18221482 -184864050 + MLT1A1 LTR MaLR 1 365 0 2582 173 44 23 chr5 18221482 18221512 -184864020 - L1MB3 LINE L1 -566 5617 5589 233 304 59 20 chr5 18221636 18221738 -184863794 + L2 LINE L2 2701 2806 -508 213 286 0 0 chr5 18221744 18221793 -184863739 + (CA)n Simple_repeat Simple_repeat 1 49 0 180 0 0 0 chr5 18225746 18225766 -184859766 + (A)n Simple_repeat Simple_repeat 1 20 0 2047 125 14 0 chr5 18226209 18226552 -184858980 - AluSx SINE Alu 0 347 1 1856 178 65 11 chr5 18227235 18227605 -184857927 - MLT1B LTR MaLR 0 390 1 226 309 62 0 chr5 18227712 18227793 -184857739 - MIR SINE MIR -78 184 99 320 272 53 18 chr5 18227902 18228016 -184857516 - MIR3 SINE MIR -77 131 14 21 0 0 0 chr5 18230025 18230046 -184855486 + AT_rich Low_complexity Low_complexity 1 21 0 3788 226 92 29 chr5 18230048 18230275 -184855257 - L1MC4a LINE L1 -5 7803 7592 516 118 53 0 chr5 18230275 18230351 -184855181 + MADE1 DNA Mariner 1 80 0 3788 226 92 29 chr5 18230351 18230630 -184854902 - L1MC4a LINE L1 -216 7592 7332 1664 167 80 22 chr5 18230630 18230954 -184854578 - MER61A LTR ERV1 0 343 1 3788 226 92 29 chr5 18230954 18231549 -184853983 - L1MC4a LINE L1 -476 7332 6631 2118 114 93 32 chr5 18231638 18231981 -184853551 - THE1B LTR MaLR 0 364 1 4204 80 25 6 chr5 18231981 18232531 -184853001 - THE1B-int LTR MaLR 0 1580 1020 670 207 80 142 chr5 18232558 18232973 -184852559 - L1MC4a LINE L1 -1226 6582 6194 1528 189 103 26 chr5 18233012 18233361 -184852171 - MLT1B LTR MaLR -12 378 3 2237 120 20 0 chr5 18234553 18234854 -184850678 - AluSg SINE Alu -3 307 1 192 238 139 30 chr5 18238174 18238275 -184847257 + L3 LINE CR1 1424 1535 -42 309 300 11 0 chr5 18238357 18238447 -184847085 + MIR SINE MIR 65 155 -107 207 200 33 33 chr5 18240062 18240122 -184845410 + MIR SINE MIR 77 136 -126 207 69 0 0 chr5 18241676 18241705 -184843827 + (TCCC)n Simple_repeat Simple_repeat 3 31 0 2094 122 10 7 chr5 18242489 18242793 -184842739 + AluSx SINE Alu 1 305 -7 27 0 0 0 chr5 18242973 18243000 -184842532 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr5 18243655 18243678 -184841854 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 251 295 21 0 chr5 18247955 18248050 -184837482 - MIR SINE MIR -120 142 46 248 311 47 0 chr5 18248094 18248200 -184837332 - L2 LINE L2 -14 3299 3189 201 191 24 0 chr5 18248582 18248624 -184836908 + T-rich Low_complexity Low_complexity 4 46 0 2120 118 17 0 chr5 18249481 18249769 -184835763 - AluSx SINE Alu -19 293 1 229 296 31 31 chr5 18250141 18250239 -184835293 - L2 LINE L2 -2 3270 3173 6517 122 144 125 chr5 18250288 18251965 -184833567 - pTR5 LTR ERV1 0 2438 375 28 0 0 0 chr5 18252914 18252942 -184832590 + GC_rich Low_complexity Low_complexity 1 28 0 321 284 11 0 chr5 18253820 18253915 -184831617 - L2 LINE L2 -24 3289 3194 184 306 14 56 chr5 18254320 18254392 -184831140 + L2 LINE L2 3162 3230 -42 1158 147 11 0 chr5 18255121 18255298 -184830234 + AluSg/x SINE Alu 124 302 -10 2438 87 0 3 chr5 18255445 18255756 -184829776 - AluY SINE Alu -1 310 1 1578 201 194 11 chr5 18261304 18261748 -184823784 - MER77 LTR ERV1 -4 601 77 231 291 35 12 chr5 18262219 18262305 -184823227 - L1ME4a LINE L1 -98 6023 5936 247 273 11 34 chr5 18262356 18262444 -184823088 - L1ME4a LINE L1 -1940 5868 5783 725 202 60 27 chr5 18262461 18262644 -184822888 - MIR SINE MIR -17 245 57 21 0 0 0 chr5 18262648 18262669 -184822863 + AT_rich Low_complexity Low_complexity 1 21 0 1910 140 17 3 chr5 18263074 18263367 -184822165 + AluJo SINE Alu 1 297 -15 261 250 107 6 chr5 18264630 18264798 -184820734 + L1M4 LINE L1 3029 3213 -2933 392 261 27 0 chr5 18267472 18267583 -184817949 + L2 LINE L2 3157 3270 -2 28 48 0 0 chr5 18268440 18268482 -184817050 + AT_rich Low_complexity Low_complexity 1 42 0 278 245 21 43 chr5 18270020 18270114 -184815418 + MIR SINE MIR 153 244 -18 1810 158 3 38 chr5 18270199 18270515 -184815017 - AluJo SINE Alu -7 305 1 23 33 0 0 chr5 18271439 18271469 -184814063 + AT_rich Low_complexity Low_complexity 1 30 0 2298 112 6 6 chr5 18272050 18272362 -184813170 + AluSx SINE Alu 1 312 0 4471 203 100 10 chr5 18272895 18274050 -184811482 - Charlie1a DNA MER1_type -200 1255 1 1621 176 13 48 chr5 18274211 18274524 -184811008 + AluJo SINE Alu 1 302 -10 29 28 0 0 chr5 18275191 18275227 -184810305 + AT_rich Low_complexity Low_complexity 1 36 0 1017 176 0 6 chr5 18276352 18276522 -184809010 + FAM SINE Alu 3 171 -4 802 142 0 0 chr5 18276605 18276718 -184808814 + FLAM_A SINE Alu 21 133 -9 222 91 0 0 chr5 18277302 18277335 -184808197 + (T)n Simple_repeat Simple_repeat 1 33 0 265 84 42 141 chr5 18277776 18277847 -184807685 - MER5A DNA MER1_type -125 64 1 222 326 57 46 chr5 18278700 18278875 -184806657 - L2 LINE L2 -39 3274 3098 27 29 0 0 chr5 18279738 18279772 -184805760 + AT_rich Low_complexity Low_complexity 1 34 0 2120 177 55 13 chr5 18280138 18280595 -184804937 - L1MB3 LINE L1 -2 6181 5706 731 321 19 0 chr5 18280897 18281109 -184804423 - MIR SINE MIR -41 221 6 2410 87 0 7 chr5 18281244 18281542 -184803990 + AluSp SINE Alu 1 296 -17 405 205 0 0 chr5 18283040 18283157 -184802375 + (CGG)n Simple_repeat Simple_repeat 3 119 0 27 73 0 0 chr5 18283306 18283361 -184802171 + GC_rich Low_complexity Low_complexity 1 55 0 1925 101 42 49 chr5 18285537 18285824 -184799708 + AluSg SINE Alu 1 285 -25 234 0 0 0 chr5 18288639 18288665 -184796867 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1256 239 30 66 chr5 18288727 18288792 -184796740 - MLT2D LTR ERVL -2 412 346 10260 148 78 91 chr5 18288792 18290157 -184795375 + Tigger1 DNA MER2_type 1 1383 -1035 2103 144 0 0 chr5 18290157 18290456 -184795076 + AluSx SINE Alu 1 299 -13 10260 148 78 91 chr5 18290456 18291227 -184794305 + Tigger1 DNA MER2_type 1383 2101 -317 2223 96 7 7 chr5 18291227 18291519 -184794013 + AluY SINE Alu 1 292 -19 10260 148 78 91 chr5 18291519 18291833 -184793699 + Tigger1 DNA MER2_type 2101 2418 0 1256 239 30 66 chr5 18291833 18292194 -184793338 - MLT2D LTR ERVL -68 346 1 2348 87 3 3 chr5 18295310 18295610 -184789922 + AluY SINE Alu 1 300 -11 1894 145 23 13 chr5 18296150 18296454 -184789078 + AluJb SINE Alu 1 307 -5 226 200 0 0 chr5 18296552 18296602 -184788930 + L1ME3A LINE L1 6113 6162 -8 22 0 0 0 chr5 18296734 18296756 -184788776 + AT_rich Low_complexity Low_complexity 1 22 0 871 237 68 23 chr5 18297741 18298049 -184787483 - MER33 DNA MER1_type 0 324 3 274 301 70 6 chr5 18298373 18298529 -184787003 + MER105 DNA DNA 2 167 -37 390 228 151 23 chr5 18299068 18299287 -184786245 - MLT1H LTR MaLR -230 319 73 324 188 82 0 chr5 18301087 18301172 -184784360 + MER69A DNA AcHobo 32 123 -54 592 282 79 0 chr5 18301954 18302156 -184783376 + MIR SINE MIR 35 252 -10 229 231 0 19 chr5 18302273 18302325 -184783207 - MIR SINE MIR -118 144 94 431 228 60 20 chr5 18306931 18307080 -184778452 - L1M4 LINE L1 -1383 4763 4609 477 0 0 0 chr5 18307166 18307219 -184778313 + (TC)n Simple_repeat Simple_repeat 2 54 0 477 0 0 0 chr5 18307218 18307271 -184778261 + (TA)n Simple_repeat Simple_repeat 2 54 0 2227 70 11 21 chr5 18307271 18307558 -184777974 - AluY SINE Alu -27 284 1 572 223 74 75 chr5 18307565 18307815 -184777717 - L1ME3 LINE L1 -19 6147 5894 * 4171 208 54 23 chr5 18307810 18307885 -184777647 - L1MD1 LINE L1 0 6636 6565 2431 101 0 3 chr5 18307885 18308193 -184777339 + AluSp SINE Alu 1 307 -6 4171 208 54 23 chr5 18308193 18308761 -184776771 - L1MD1 LINE L1 -71 6565 6016 1830 103 10 164 chr5 18308761 18309157 -184776375 - MER1B DNA MER1_type -2 335 1 4171 208 54 23 chr5 18309157 18309828 -184775704 - L1MD1 LINE L1 -620 6016 5367 2284 108 0 0 chr5 18309828 18310125 -184775407 + AluY SINE Alu 1 297 -14 4171 208 54 23 chr5 18310125 18310753 -184774779 - L1MD1 LINE L1 -1269 5367 4628 2282 105 6 10 chr5 18310769 18311082 -184774450 - AluSx SINE Alu 0 312 1 472 182 23 0 chr5 18311117 18311205 -184774327 + Tigger5 DNA MER2_type 2234 2323 0 1458 184 48 6 chr5 18311205 18311521 -184774011 - L1MD1 LINE L1 -4332 2208 1880 399 266 42 91 chr5 18311526 18311767 -184773765 - MER34 LTR ERV1 0 542 314 1142 221 13 4 chr5 18311787 18312018 -184773514 + AluJo SINE Alu 1 233 -79 495 163 12 0 chr5 18312018 18312098 -184773434 - AluS SINE Alu -229 83 3 452 122 14 0 chr5 18312100 18312174 -184773358 - AluS SINE Alu -7 304 230 541 145 0 0 chr5 18312175 18312251 -184773281 + AluJo SINE Alu 217 292 -20 2289 224 43 8 chr5 18312511 18313061 -184772471 - L1MD1 LINE L1 -5638 902 18 5786 109 9 56 chr5 18314028 18314720 -184770812 - L1PA14 LINE L1 -3 6158 5557 2464 87 0 0 chr5 18314720 18315019 -184770513 - AluSx SINE Alu -11 301 3 5786 109 9 56 chr5 18315019 18315750 -184769782 - L1PA14 LINE L1 -604 5557 4793 2409 98 7 0 chr5 18316130 18316437 -184769095 + AluSx SINE Alu 1 309 -3 1057 251 98 24 chr5 18316607 18317057 -184768475 - MLT1D LTR MaLR 0 505 23 274 308 228 8 chr5 18317184 18317447 -184768085 + L2 LINE L2 2422 2742 -572 246 281 56 119 chr5 18317560 18317863 -184767669 + L2 LINE L2 2933 3216 -56 2332 106 0 0 chr5 18317924 18318225 -184767307 - AluSx SINE Alu -1 311 11 280 213 75 11 chr5 18318810 18318904 -184766628 - LTR33 LTR ERVL -2 519 420 481 232 86 7 chr5 18318960 18319111 -184766421 - LTR33 LTR ERVL -338 183 21 4760 139 39 44 chr5 18319148 18319531 -184766001 + L1MC1 LINE L1 5452 5836 -497 2185 128 0 0 chr5 18319531 18319829 -184765703 + AluSx SINE Alu 3 300 -12 4760 139 39 44 chr5 18319829 18320323 -184765209 + L1MC1 LINE L1 5836 6324 -9 2237 104 0 0 chr5 18320326 18320647 -184764885 + AluSx SINE Alu 3 323 0 2437 98 0 0 chr5 18321626 18321933 -184763599 - AluSx SINE Alu -5 307 1 22 0 0 0 chr5 18322062 18322084 -184763448 + AT_rich Low_complexity Low_complexity 1 22 0 2377 78 3 3 chr5 18322674 18322969 -184762563 - AluSc SINE Alu -14 295 1 1156 253 40 33 chr5 18323198 18323335 -184762197 + L1ME LINE L1 4369 4504 -1642 2335 101 0 3 chr5 18323335 18323632 -184761900 - AluSg SINE Alu -14 296 1 1156 253 40 33 chr5 18323632 18323959 -184761573 + L1ME LINE L1 4504 4815 -1331 2165 114 14 3 chr5 18323993 18324290 -184761242 - AluSx SINE Alu -12 300 1 242 296 0 0 chr5 18324752 18324833 -184760699 + L1ME LINE L1 5727 5807 -314 22 0 0 0 chr5 18324891 18324913 -184760619 + AT_rich Low_complexity Low_complexity 1 22 0 329 143 16 16 chr5 18325185 18325248 -184760284 + MER5A DNA MER1_type 9 71 -118 1866 98 4 0 chr5 18325325 18325571 -184759961 - AluSx SINE Alu -10 302 56 263 234 290 0 chr5 18325843 18325950 -184759582 + MER5A DNA MER1_type 46 183 -6 2183 115 13 0 chr5 18326094 18326398 -184759134 + AluSp SINE Alu 2 309 -4 358 253 152 0 chr5 18327212 18327311 -184758221 - MER81 DNA DNA 0 114 1 2481 57 3 29 chr5 18328634 18328949 -184756583 - AluY SINE Alu -4 307 1 2074 113 46 65 chr5 18329040 18329368 -184756164 + THE1B LTR MaLR 1 323 -41 2603 64 0 6 chr5 18329368 18329679 -184755853 - AluY SINE Alu -2 309 1 2074 113 46 65 chr5 18329679 18329721 -184755811 + THE1B LTR MaLR 323 364 0 2379 95 3 9 chr5 18330731 18331046 -184754486 - AluSq SINE Alu 0 313 1 719 208 8 0 chr5 18331093 18331218 -184754314 + FLAM_A SINE Alu 2 127 -6 825 197 26 0 chr5 18331661 18331813 -184753719 + FRAM SINE Alu 1 156 -20 1248 174 4 37 chr5 18331876 18332118 -184753414 - L1MD3 LINE L1 -1022 6973 6740 2021 113 3 7 chr5 18332119 18332425 -184753107 + AluSx SINE Alu 1 305 0 2535 53 0 10 chr5 18332523 18332822 -184752710 - AluY SINE Alu -15 296 1 8263 166 23 88 chr5 18332823 18333916 -184751616 - L1M2 LINE L1 -1765 5443 4280 2188 122 20 0 chr5 18333916 18334219 -184751313 - AluSx SINE Alu 0 312 4 8263 166 23 88 chr5 18334219 18334714 -184750818 - L1M2 LINE L1 -2928 4280 3754 2311 118 0 6 chr5 18334714 18335028 -184750504 - AluSx SINE Alu 0 312 1 8263 166 23 88 chr5 18335028 18335347 -184750185 - L1M2 LINE L1 -3454 3754 3686 1734 114 0 0 chr5 18335347 18335574 -184749958 - AluSg/x SINE Alu -8 302 76 8263 166 23 88 chr5 18335574 18335793 -184749739 - L1M2 LINE L1 -3522 3686 3454 2259 127 99 23 chr5 18335796 18336189 -184749343 - MSTA LTR MaLR 0 428 6 5048 198 89 41 chr5 18336245 18337683 -184747849 - L1M2 LINE L1 -3788 3420 1920 327 260 53 77 chr5 18337683 18337852 -184747680 - MLT1K LTR MaLR -19 569 405 466 245 76 54 chr5 18337853 18338196 -184747336 - L1M2 LINE L1 -5297 1912 1539 * 2097 253 137 30 chr5 18338172 18338871 -184746661 - L1M2 LINE L1 -6399 810 37 1167 134 21 0 chr5 18338871 18339057 -184746475 - AluSg/x SINE Alu -2 310 121 278 213 0 0 chr5 18339059 18339106 -184746426 - L1 LINE L1 -6790 59 13 232 261 0 31 chr5 18339260 18339325 -184746207 + MLT1K LTR MaLR 1 63 -525 411 259 85 110 chr5 18339374 18339810 -184745722 + MLT1K LTR MaLR 164 588 0 355 241 7 7 chr5 18341043 18341180 -184744352 + CT-rich Low_complexity Low_complexity 2 138 0 453 321 18 87 chr5 18341748 18341782 -184743750 - L2 LINE L2 -1 3312 3277 294 29 0 0 chr5 18341782 18341817 -184743715 + (TG)n Simple_repeat Simple_repeat 1 35 0 453 321 18 87 chr5 18341817 18341948 -184743584 - L2 LINE L2 -36 3277 3139 2224 135 15 42 chr5 18341948 18342349 -184743183 + MLT1B LTR MaLR 1 390 0 453 321 18 87 chr5 18342349 18342562 -184742970 - L2 LINE L2 -174 3139 2959 14481 118 32 53 chr5 18342787 18342964 -184742568 - Tigger1 DNA MER2_type 0 2418 2239 2179 121 7 0 chr5 18342964 18343261 -184742271 + AluSc SINE Alu 1 299 -10 14481 118 32 53 chr5 18343261 18343686 -184741846 - Tigger1 DNA MER2_type -179 2239 1807 2432 91 0 0 chr5 18343686 18343995 -184741537 + AluSg SINE Alu 1 309 -1 14481 118 32 53 chr5 18343995 18345860 -184739672 - Tigger1 DNA MER2_type -611 1807 1 2068 238 24 24 chr5 18346768 18347226 -184738306 + LTR40a LTR ERVL 62 519 0 22 56 0 0 chr5 18347244 18347280 -184738252 + AT_rich Low_complexity Low_complexity 1 36 0 1896 88 0 0 chr5 18347338 18347566 -184737966 - AluSc SINE Alu -21 288 61 555 329 32 5 chr5 18347606 18347822 -184737710 - MIR SINE MIR -4 258 37 2011 178 20 0 chr5 18347968 18348316 -184737216 + MLT1A1 LTR MaLR 11 365 0 1885 117 50 18 chr5 18348775 18349057 -184736475 + AluSq SINE Alu 1 291 -22 2190 133 33 28 chr5 18349831 18350193 -184735339 + THE1B LTR MaLR 1 364 0 2504 78 0 0 chr5 18350759 18351065 -184734467 - AluY SINE Alu -5 306 1 236 307 58 58 chr5 18351091 18351228 -184734304 + MER5B DNA MER1_type 20 156 -22 2791 135 57 60 chr5 18351410 18352011 -184733521 - MER4D LTR ERV1 -1 865 307 2285 117 0 0 chr5 18352011 18352310 -184733222 + AluSx SINE Alu 1 299 -13 4031 145 45 24 chr5 18352319 18352600 -184732932 + MER50 LTR ERV1 1 275 -459 1934 108 0 7 chr5 18352600 18352878 -184732654 - AluSc SINE Alu 0 309 34 4031 145 45 24 chr5 18352878 18353293 -184732239 + MER50 LTR ERV1 275 711 -23 4583 119 26 45 chr5 18353294 18353979 -184731553 + MER49 LTR ERV1 196 892 -31 2081 130 0 26 chr5 18353979 18354286 -184731246 + AluSx SINE Alu 1 299 -13 222 37 0 0 chr5 18354286 18354313 -184731219 + (GA)n Simple_repeat Simple_repeat 2 28 0 4583 119 26 45 chr5 18354313 18354368 -184731164 + MER49 LTR ERV1 890 923 0 2368 99 0 7 chr5 18354772 18355074 -184730458 + AluSx SINE Alu 2 301 -11 2227 105 3 0 chr5 18356319 18356615 -184728917 + AluSp SINE Alu 1 297 -16 316 229 160 38 chr5 18357092 18357223 -184728309 - MIR SINE MIR 0 262 116 946 188 17 6 chr5 18357230 18357406 -184728126 - MLT1A1 LTR MaLR -185 180 3 954 248 58 69 chr5 18357411 18357802 -184727730 - MLT1G LTR MaLR -217 338 16 429 54 0 0 chr5 18358516 18358572 -184726960 + (TG)n Simple_repeat Simple_repeat 1 56 0 451 276 0 24 chr5 18358713 18358840 -184726692 + MLT1K LTR MaLR 437 560 -28 703 276 112 53 chr5 18359806 18359892 -184725640 - HAL1 LINE L1 -127 2380 2300 2056 126 10 7 chr5 18359892 18360201 -184725331 - AluSx SINE Alu -2 310 1 703 276 112 53 chr5 18360201 18360658 -184724874 - HAL1 LINE L1 -207 2300 1805 1440 124 179 19 chr5 18360800 18360915 -184724617 - AluSg1 SINE Alu -11 298 203 2487 99 8 6 chr5 18360915 18361269 -184724263 - THE1A LTR MaLR 0 355 1 11621 105 5 1 chr5 18361269 18362842 -184722690 - THE1A-int LTR MaLR 0 1580 1 2485 107 8 8 chr5 18362842 18363197 -184722335 - THE1A LTR MaLR 0 355 1 1440 124 179 19 chr5 18363197 18363336 -184722196 - AluSg1 SINE Alu -105 204 1 259 301 21 11 chr5 18363585 18363678 -184721854 + MIR SINE MIR 31 124 -138 181 261 23 68 chr5 18363919 18364007 -184721525 - MIR SINE MIR -1 261 178 2072 140 10 0 chr5 18364021 18364452 -184721080 - AluSx SINE Alu 0 434 1 454 222 90 35 chr5 18364498 18364642 -184720890 + MIR SINE MIR 111 262 0 196 261 0 0 chr5 18365009 18365055 -184720477 + L2 LINE L2 3256 3301 -12 1489 78 74 18 chr5 18365277 18365494 -184720038 - MER30 DNA MER1_type -1 229 1 296 198 209 11 chr5 18365703 18365794 -184719738 - L2 LINE L2 0 3313 3205 1987 159 0 3 chr5 18366257 18366558 -184718974 + AluJb SINE Alu 1 300 -12 707 228 7 0 chr5 18367131 18367280 -184718252 + MER58B DNA MER1_type 7 156 -185 1019 168 0 6 chr5 18367282 18367443 -184718089 + FRAM SINE Alu 1 155 -21 715 207 14 21 chr5 18367518 18367663 -184717869 + MER58B DNA MER1_type 196 339 -2 316 268 109 7 chr5 18367859 18367997 -184717535 - L1ME4a LINE L1 -39 6082 5931 455 274 91 32 chr5 18368050 18368236 -184717296 - MLT1K LTR MaLR -111 477 281 1857 190 16 38 chr5 18368270 18368643 -184716889 - MLT1A1 LTR MaLR 0 365 1 345 329 20 13 chr5 18368749 18368898 -184716634 - MIR3 SINE MIR -2 206 57 650 229 0 0 chr5 18369032 18369163 -184716369 + FLAM_A SINE Alu 2 132 -1 2449 91 3 0 chr5 18369165 18369474 -184716058 + AluY SINE Alu 1 310 -1 193 308 145 38 chr5 18369953 18370068 -184715464 - L2 LINE L2 -2 3270 3132 2203 117 0 13 chr5 18370068 18370377 -184715155 - AluSx SINE Alu -7 305 1 193 308 145 38 chr5 18370377 18370420 -184715112 - L2 LINE L2 -140 3132 3095 21 0 0 0 chr5 18370989 18371010 -184714522 + AT_rich Low_complexity Low_complexity 1 21 0 349 125 0 0 chr5 18371023 18371079 -184714453 - Alu SINE Alu -1 301 246 1340 160 38 52 chr5 18371081 18371368 -184714164 - L1M3 LINE L1 -557 5623 5341 1244 184 5 9 chr5 18371371 18371594 -184713938 - AluJo SINE Alu -5 307 86 963 262 0 5 chr5 18371651 18371872 -184713660 - AluJo SINE Alu -92 220 1 458 252 31 25 chr5 18372145 18372304 -184713228 - MIR SINE MIR -55 207 48 1317 123 238 12 chr5 18372361 18372605 -184712927 - AluSg1 SINE Alu -10 299 1 6741 167 123 38 chr5 18372634 18374199 -184711333 + pTR5 LTR ERV1 741 2438 0 238 156 0 0 chr5 18374557 18374593 -184710939 + L1MB3 LINE L1 6107 6145 -38 2090 119 7 14 chr5 18374593 18374886 -184710646 + AluSx SINE Alu 1 291 -21 632 261 101 5 chr5 18375468 18375656 -184709876 - MIR SINE MIR -30 232 27 464 225 46 40 chr5 18376195 18376346 -184709186 + MIR SINE MIR 109 260 -2 23 0 0 0 chr5 18377347 18377370 -184708162 + GC_rich Low_complexity Low_complexity 1 23 0 183 42 0 0 chr5 18377507 18377531 -184708001 + (CGGGG)n Simple_repeat Simple_repeat 1 24 0 2058 92 3 68 chr5 18378054 18378380 -184707152 + AluSg SINE Alu 1 305 -5 1200 231 132 21 chr5 18384097 18384549 -184700983 - MLT1J LTR MaLR -4 482 7 412 272 185 30 chr5 18384591 18385029 -184700503 - L2 LINE L2 -1 3312 2807 684 154 9 0 chr5 18385044 18385154 -184700378 + MER81 DNA DNA 3 113 -1 1926 130 35 3 chr5 18385209 18385493 -184700039 + AluSx SINE Alu 1 293 -19 217 232 147 32 chr5 18385787 18385882 -184699650 + MER5B DNA MER1_type 7 112 -66 268 247 78 0 chr5 18385924 18386001 -184699531 - MER5A DNA MER1_type -106 83 1 270 288 62 0 chr5 18386684 18386764 -184698768 + L3 LINE CR1 762 846 -731 431 327 82 67 chr5 18387232 18387341 -184698191 + L3 LINE CR1 911 1017 -560 1519 219 60 0 chr5 18387341 18387660 -184697872 + MER58B DNA MER1_type 4 341 0 431 327 82 67 chr5 18387660 18387880 -184697652 + L3 LINE CR1 1017 1245 -332 224 298 0 0 chr5 18388232 18388289 -184697243 + L3 LINE CR1 1254 1310 -267 240 306 114 42 chr5 18388352 18388712 -184696820 + L2 LINE L2 2885 3270 -2 199 295 98 0 chr5 18388722 18388844 -184696688 + L3 LINE CR1 1363 1496 -81 243 0 0 0 chr5 18391181 18391208 -184694324 + (T)n Simple_repeat Simple_repeat 1 27 0 855 185 107 56 chr5 18392211 18392570 -184692962 - MSTC LTR MaLR 0 428 1 261 255 51 20 chr5 18392582 18392680 -184692852 + MIR SINE MIR 47 147 -115 260 324 28 19 chr5 18392701 18392809 -184692723 - MIR SINE MIR 0 262 154 247 298 48 24 chr5 18392886 18393010 -184692522 - MIR SINE MIR -105 157 31 312 297 11 0 chr5 18393016 18393107 -184692425 + MIR SINE MIR 153 244 -18 375 335 65 6 chr5 18393969 18394139 -184691393 + L1MC/D LINE L1 5578 5757 -2051 685 136 0 59 chr5 18394147 18394265 -184691267 + FRAM SINE Alu 43 153 -23 228 268 14 0 chr5 18394290 18394361 -184691171 + L1MC/D LINE L1 5788 5859 -1949 2109 125 3 3 chr5 18394747 18395044 -184690488 + AluSp SINE Alu 1 297 -16 2757 77 30 6 chr5 18395580 18395946 -184689586 + THE1C LTR MaLR 1 375 0 245 289 132 35 chr5 18396140 18396254 -184689278 - MIR SINE MIR -118 144 20 23 86 0 0 chr5 18396322 18396380 -184689152 + AT_rich Low_complexity Low_complexity 1 58 0 1745 180 10 3 chr5 18397981 18398276 -184687256 - AluJb SINE Alu -15 297 1 3597 180 85 12 chr5 18398428 18399323 -184686209 - L1ME1 LINE L1 -29 6137 5180 203 161 0 0 chr5 18399425 18399456 -184686076 + (TG)n Simple_repeat Simple_repeat 2 32 0 1443 206 4 11 chr5 18399590 18399862 -184685670 + AluJo SINE Alu 1 270 -42 291 57 0 0 chr5 18399862 18399897 -184685635 - THE1A LTR MaLR 0 355 321 * 332 80 22 0 chr5 18399885 18399939 -184685593 - THE1B LTR MaLR -300 55 1 10897 97 12 46 chr5 18399939 18401574 -184683958 - THE1B-int LTR MaLR 0 1580 1 2156 116 53 44 chr5 18401574 18401935 -184683597 - THE1B LTR MaLR 0 364 1 296 219 68 68 chr5 18402053 18402199 -184683333 - MIR SINE MIR -57 205 60 2285 102 0 3 chr5 18402487 18402782 -184682750 + AluSx SINE Alu 1 294 -18 432 330 97 0 chr5 18403400 18403606 -184681926 + MIR SINE MIR 19 244 -18 1583 202 36 28 chr5 18403757 18404114 -184681418 - MLT1A1 LTR MaLR -5 360 1 2532 30 40 0 chr5 18405163 18405459 -184680073 - AluY SINE Alu -3 308 1 261 238 0 0 chr5 18406372 18406452 -184679080 + (TA)n Simple_repeat Simple_repeat 1 80 0 2017 184 25 70 chr5 18406659 18407186 -184678346 + MLT1D LTR MaLR 1 503 -2 656 122 47 61 chr5 18408423 18408470 -184677062 - L1MB3 LINE L1 -4 6179 6133 2241 96 7 3 chr5 18408470 18408763 -184676769 - AluSq SINE Alu -19 294 1 656 122 47 61 chr5 18408763 18408863 -184676669 - L1MB3 LINE L1 -50 6133 6034 277 247 112 0 chr5 18411527 18411616 -184673916 - MER5C DNA MER1_type 0 324 226 257 164 104 15 chr5 18411628 18411695 -184673837 - MER5C DNA MER1_type -202 122 50 2143 109 6 16 chr5 18412659 18412970 -184672562 + AluSx SINE Alu 1 308 -4 2393 93 0 13 chr5 18413607 18413919 -184671613 + AluSq SINE Alu 3 310 -3 300 212 0 0 chr5 18413919 18413985 -184671547 + (TA)n Simple_repeat Simple_repeat 1 66 0 1095 106 0 0 chr5 18414054 18414196 -184671336 + AluSg/x SINE Alu 155 296 -14 2240 228 101 136 chr5 18416795 18417472 -184668060 + L1MEc LINE L1 588 1287 -5109 1852 164 13 7 chr5 18417472 18417776 -184667756 + AluJo SINE Alu 1 306 -6 2240 228 101 136 chr5 18417776 18418132 -184667400 + L1MEc LINE L1 1287 1654 -4742 791 195 0 0 chr5 18418132 18418260 -184667272 + FAM SINE Alu 41 168 -17 2240 228 101 136 chr5 18418260 18418290 -184667242 + L1MEc LINE L1 1654 1684 -4712 2055 138 6 10 chr5 18418290 18418601 -184666931 + AluSx SINE Alu 1 310 -2 2240 228 101 136 chr5 18418601 18418801 -184666731 + L1MEc LINE L1 1684 1889 -4507 2360 95 0 0 chr5 18418801 18419096 -184666436 + AluSx SINE Alu 1 295 -17 2240 228 101 136 chr5 18419096 18419191 -184666341 + L1MEc LINE L1 1889 1986 -4410 2299 101 0 23 chr5 18419191 18419497 -184666035 + AluSc SINE Alu 1 299 -10 2240 228 101 136 chr5 18419497 18419769 -184665763 + L1MEc LINE L1 1986 2288 -4108 264 200 0 0 chr5 18419908 18419968 -184665564 + (TA)n Simple_repeat Simple_repeat 1 60 0 27 29 0 0 chr5 18420276 18420310 -184665222 + AT_rich Low_complexity Low_complexity 1 34 0 245 192 104 104 chr5 18420548 18420673 -184664859 - MLT1K LTR MaLR 0 588 464 1942 167 24 0 chr5 18422487 18422816 -184662716 + L1MA9 LINE L1 5376 5712 -600 494 143 62 27 chr5 18422849 18422961 -184662571 - L1MA9 LINE L1 -30 6282 6167 2031 172 154 44 chr5 18423008 18423100 -184662432 + L1MA9 LINE L1 5681 5762 -550 345 24 0 0 chr5 18423100 18423142 -184662390 + (CA)n Simple_repeat Simple_repeat 1 42 0 2031 172 154 44 chr5 18423142 18423596 -184661936 + L1MA9 LINE L1 5762 6287 -25 4782 141 19 70 chr5 18424261 18424648 -184660884 - L1MB8 LINE L1 -6 6172 5767 1591 191 32 0 chr5 18424648 18424930 -184660602 - AluJb SINE Alu -17 295 5 4782 141 19 70 chr5 18424930 18425409 -184660123 - L1MB8 LINE L1 -411 5767 5265 2121 133 36 30 chr5 18425409 18425770 -184659762 - THE1B LTR MaLR 0 364 2 2075 117 7 7 chr5 18425770 18426051 -184659481 - AluSx SINE Alu -31 281 1 4782 141 19 70 chr5 18426051 18426205 -184659327 - L1MB8 LINE L1 -911 5267 5180 21 0 0 0 chr5 18426662 18426683 -184658849 + AT_rich Low_complexity Low_complexity 1 21 0 2012 141 7 7 chr5 18426963 18427268 -184658264 - AluJb SINE Alu -7 305 1 186 235 0 0 chr5 18427548 18427582 -184657950 + MIR SINE MIR 25 58 -150 2410 97 3 0 chr5 18427622 18427930 -184657602 - AluSx SINE Alu -3 309 1 2241 111 7 0 chr5 18428472 18428779 -184656753 + AluSc SINE Alu 1 309 0 261 342 63 9 chr5 18428838 18428949 -184656583 - L2 LINE L2 -12 3260 3144 1967 122 3 18 chr5 18429074 18429360 -184656172 + AluSx SINE Alu 30 311 -1 504 179 75 0 chr5 18429590 18429696 -184655836 + L1PA8A LINE L1 5990 6103 -28 393 226 11 21 chr5 18431081 18431174 -184654358 + L1PA8A LINE L1 6038 6150 -4 222 37 0 0 chr5 18431232 18431259 -184654273 + (CA)n Simple_repeat Simple_repeat 2 28 0 448 163 50 0 chr5 18431260 18431340 -184654192 + L2 LINE L2 3175 3258 -55 853 181 0 0 chr5 18432760 18432893 -184652639 - FLAM_C SINE Alu -10 133 1 2609 62 3 0 chr5 18433511 18433818 -184651714 - AluSp SINE Alu -5 308 1 5010 131 26 33 chr5 18433840 18434679 -184650853 - L1PB4 LINE L1 -7 6149 5317 5787 167 16 104 chr5 18436656 18437020 -184648512 - L1PB4 LINE L1 -1069 5077 4682 237 90 28 0 chr5 18437020 18437059 -184648473 - Alu SINE Alu -11 288 253 5787 167 16 104 chr5 18437059 18437077 -184648455 - L1PB4 LINE L1 -1464 4682 4664 1224 157 104 74 chr5 18437077 18437376 -184648156 - AluSg SINE Alu 0 310 3 5787 167 16 104 chr5 18437376 18437559 -184647973 - L1PB4 LINE L1 -1482 4664 4466 1761 92 4 0 chr5 18437559 18437787 -184647745 - AluY SINE Alu -1 310 82 5787 167 16 104 chr5 18437787 18438133 -184647399 - L1PB4 LINE L1 -1680 4466 4091 2297 113 3 0 chr5 18438133 18438442 -184647090 + AluSx SINE Alu 1 310 -2 5787 167 16 104 chr5 18438442 18439301 -184646231 - L1PB4 LINE L1 -2055 4091 3465 1368 54 12 6 chr5 18439301 18439469 -184646063 - L1MA1 LINE L1 -4 6298 6130 5787 167 16 104 chr5 18439469 18439537 -184645995 - L1PB4 LINE L1 -2681 3465 3393 2251 105 10 3 chr5 18439546 18439842 -184645690 - AluSq SINE Alu -15 298 1 1842 187 56 37 chr5 18439870 18440263 -184645269 + Charlie1b DNA MER1_type 50 455 -2306 2831 178 30 44 chr5 18440263 18440829 -184644703 - MER74A LTR ERVL 0 558 1 1842 187 56 37 chr5 18440829 18440900 -184644632 + Charlie1b DNA MER1_type 455 523 0 348 189 14 27 chr5 18440900 18440972 -184644560 - MLT1I LTR MaLR -16 393 323 336 233 41 0 chr5 18441744 18441817 -184643715 + MIR SINE MIR 3 78 -184 1272 122 0 94 chr5 18443110 18443365 -184642167 - AluSg/x SINE Alu -5 307 77 439 105 0 79 chr5 18443365 18443387 -184642145 - AluSq/x SINE Alu -166 146 124 189 0 0 0 chr5 18443387 18443408 -184642124 + (TA)n Simple_repeat Simple_repeat 1 21 0 439 105 0 79 chr5 18443408 18443461 -184642071 - AluSq/x SINE Alu -188 124 77 1066 57 0 0 chr5 18443499 18443621 -184641911 - AluSg SINE Alu -188 122 1 2588 48 0 16 chr5 18443644 18443957 -184641575 - AluY SINE Alu -3 308 1 442 250 110 22 chr5 18444745 18444881 -184640651 - MIR SINE MIR -37 225 78 760 204 0 58 chr5 18445018 18445169 -184640363 + MLT1A2 LTR MaLR 1 142 -232 1519 170 110 28 chr5 18445169 18445487 -184640045 - MER2 DNA MER2_type 0 344 1 760 204 0 58 chr5 18445487 18445507 -184640025 + MLT1A2 LTR MaLR 142 162 -212 1552 199 33 16 chr5 18445511 18445817 -184639715 + AluJo SINE Alu 1 311 -1 2732 161 14 6 chr5 18445820 18446312 -184639220 + L1MA4 LINE L1 4701 5196 -950 1011 153 153 5 chr5 18446312 18446560 -184638972 + AluJo SINE Alu 73 350 0 2547 139 83 14 chr5 18446563 18447059 -184638473 + L1MA4 LINE L1 5769 6298 -2 1151 210 306 9 chr5 18448964 18449196 -184636336 - Charlie2 DNA MER1_type -290 2572 2410 1621 169 24 0 chr5 18449196 18449444 -184636088 + AluJo SINE Alu 1 254 -58 1151 210 306 9 chr5 18449444 18449783 -184635749 - Charlie2 DNA MER1_type -452 2410 1831 641 245 121 109 chr5 18449825 18450234 -184635298 - Charlie2b DNA MER1_type -2099 683 265 1216 181 67 38 chr5 18450234 18450397 -184635135 - MER33 DNA MER1_type -2261 324 167 1973 149 7 0 chr5 18450397 18450685 -184634847 + AluJb SINE Alu 1 290 -22 1216 181 67 38 chr5 18450685 18450836 -184634696 - MER33 DNA MER1_type -2418 167 1 641 245 121 109 chr5 18450836 18450965 -184634567 - Charlie2b DNA MER1_type -2517 265 139 3311 84 8 61 chr5 18451302 18451780 -184633752 - MLT2A2 LTR ERVL 0 453 1 1415 165 59 87 chr5 18452071 18452428 -184633104 - MLT1A2 LTR MaLR -27 347 1 1026 57 0 0 chr5 18452856 18452979 -184632553 + L1PA8 LINE L1 6050 6172 0 2197 115 0 34 chr5 18453728 18454049 -184631483 + AluSx SINE Alu 1 310 -2 326 186 302 25 chr5 18454128 18454263 -184631269 - Charlie7 DNA MER1_type -35 2577 2481 2200 109 0 7 chr5 18454263 18454557 -184630975 - AluSx SINE Alu -14 298 7 326 186 302 25 chr5 18454557 18454663 -184630869 - Charlie7 DNA MER1_type -131 2481 2269 1783 172 10 0 chr5 18454664 18454955 -184630577 - AluSx SINE Alu -14 298 5 2584 140 45 51 chr5 18454982 18455116 -184630416 - L1MC3 LINE L1 -6 7779 7646 1969 131 10 10 chr5 18455116 18455406 -184630126 - AluJb SINE Alu -11 301 12 2584 140 45 51 chr5 18455406 18455784 -184629748 - L1MC3 LINE L1 -139 7646 7270 1469 203 25 69 chr5 18455784 18455978 -184629554 - ERVL LTR ERVL -2346 3418 3242 1294 176 80 83 chr5 18455978 18456267 -184629265 - AluJo SINE Alu -14 288 1 1469 203 25 69 chr5 18456267 18456392 -184629140 - ERVL LTR ERVL -2522 3242 3113 6072 223 64 12 chr5 18456421 18457204 -184628328 - ERVL LTR ERVL -2769 2995 2254 2177 91 0 49 chr5 18457204 18457512 -184628020 - AluSg SINE Alu -17 293 1 6072 223 64 12 chr5 18457512 18458369 -184627163 - ERVL LTR ERVL -3510 2254 1205 792 158 16 8 chr5 18458374 18458501 -184627031 + ERVL LTR ERVL 2065 2192 -3572 443 252 39 31 chr5 18458498 18458625 -184626907 - ERVL LTR ERVL -4509 1171 1018 * 1710 234 55 7 chr5 18458625 18459065 -184626467 - MLT1C LTR MaLR 0 467 7 295 271 181 65 chr5 18459219 18459544 -184625988 + L2 LINE L2 2599 2961 -353 23 97 0 0 chr5 18460456 18460528 -184625004 + GC_rich Low_complexity Low_complexity 1 72 0 30 27 0 0 chr5 18460556 18460593 -184624939 + GC_rich Low_complexity Low_complexity 1 37 0 329 135 19 0 chr5 18461525 18461577 -184623955 - MSTB LTR MaLR -373 53 1 1781 163 7 7 chr5 18462951 18463245 -184622287 - AluJo SINE Alu -16 296 3 2254 101 0 3 chr5 18464654 18464950 -184620582 + AluSq SINE Alu 1 295 -18 1716 181 7 3 chr5 18465062 18465349 -184620183 + AluJo SINE Alu 1 288 -24 1497 103 48 44 chr5 18465387 18465639 -184619893 - L1MA5A LINE L1 -24 6273 6021 22 35 0 0 chr5 18465943 18465972 -184619560 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr5 18465993 18466021 -184619511 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr5 18466159 18466182 -184619350 + AT_rich Low_complexity Low_complexity 1 23 0 1196 192 4 4 chr5 18466186 18466415 -184619117 - AluJo SINE Alu -21 291 63 349 212 40 71 chr5 18466890 18466989 -184618543 - MIR3 SINE MIR -23 185 90 393 313 52 57 chr5 18467435 18467646 -184617886 - MIR SINE MIR -45 217 8 299 262 124 34 chr5 18468118 18468385 -184617147 - HAL1 LINE L1 -2060 447 157 2031 102 56 22 chr5 18470000 18470046 -184615486 - HSMAR2 DNA Mariner -2 1300 1257 1909 159 10 0 chr5 18470046 18470348 -184615184 + AluJo SINE Alu 1 305 -7 2031 102 56 22 chr5 18470348 18470625 -184614907 - HSMAR2 DNA Mariner -45 1257 966 1524 101 5 0 chr5 18470618 18470836 -184614696 - HSMAR2 DNA Mariner -1081 221 3 * 876 232 71 5 chr5 18471440 18471638 -184613894 + MER58A DNA MER1_type 4 214 -10 316 304 18 9 chr5 18471662 18471774 -184613758 - L1MEd LINE L1 -5771 348 236 270 256 128 23 chr5 18471905 18471991 -184613541 + L2 LINE L2 3151 3245 -27 22 0 0 0 chr5 18472698 18472720 -184612812 + AT_rich Low_complexity Low_complexity 1 22 0 515 283 66 33 chr5 18472720 18472932 -184612600 + L2 LINE L2 3046 3264 -8 461 270 215 59 chr5 18473484 18474147 -184611385 - L2 LINE L2 -5 3308 2528 235 238 16 0 chr5 18474920 18474983 -184610549 + L2 LINE L2 2484 2547 -767 23 33 0 0 chr5 18475199 18475229 -184610303 + AT_rich Low_complexity Low_complexity 1 30 0 2239 99 0 3 chr5 18476349 18476643 -184608889 + AluSq SINE Alu 1 293 -20 435 81 0 54 chr5 18477838 18477912 -184607620 + L1PA16 LINE L1 6097 6166 0 1099 90 6 6 chr5 18477912 18478068 -184607464 + Tigger1 DNA MER2_type 2083 2238 -180 387 315 81 81 chr5 18478072 18478630 -184606902 + L3 LINE CR1 787 1344 -233 656 137 36 86 chr5 18478709 18478848 -184606684 + FLAM_A SINE Alu 1 132 -1 229 225 0 0 chr5 18479154 18479194 -184606338 + Alu SINE Alu 145 184 -119 25 31 0 0 chr5 18481822 18481854 -184603678 + AT_rich Low_complexity Low_complexity 1 32 0 1114 186 0 29 chr5 18481877 18482087 -184603445 - AluJo SINE Alu -16 296 93 395 270 95 16 chr5 18484003 18484129 -184601403 + L2 LINE L2 3136 3271 -1 467 244 120 49 chr5 18484540 18484765 -184600767 - MIR SINE MIR 0 262 22 2626 189 51 2 chr5 18485904 18486416 -184599116 - MLT1F1 LTR MaLR -29 538 2 3039 158 58 75 chr5 18487242 18488234 -184597298 - L1MB8 LINE L1 -81 6089 5234 23 0 0 0 chr5 18488252 18488275 -184597257 + AT_rich Low_complexity Low_complexity 1 23 0 331 167 0 0 chr5 18489061 18489115 -184596417 - tRNA-Met-e tRNA tRNA -21 54 1 24 0 0 0 chr5 18490830 18490854 -184594678 + AT_rich Low_complexity Low_complexity 1 24 0 219 139 0 0 chr5 18492619 18492655 -184592877 + (TG)n Simple_repeat Simple_repeat 2 37 0 2067 115 3 0 chr5 18492762 18493049 -184592483 - AluSx SINE Alu -24 288 1 197 259 155 0 chr5 18494366 18494424 -184591108 + MIR SINE MIR 176 242 -20 239 296 126 37 chr5 18494460 18494595 -184590937 + MIR SINE MIR 46 192 -70 284 252 184 27 chr5 18495590 18495737 -184589795 - L1MC/D LINE L1 -2322 5486 5317 217 235 92 51 chr5 18496007 18496105 -184589427 - L2 LINE L2 -3 3269 3168 260 279 0 36 chr5 18496132 18496272 -184589260 + C-rich Low_complexity Low_complexity 4 138 0 266 286 14 0 chr5 18497496 18497566 -184587966 - MER91 DNA MER1_type -3 137 67 220 256 22 89 chr5 18497881 18497971 -184587561 - L2 LINE L2 -1005 2309 2226 199 320 72 21 chr5 18498634 18498731 -184586801 - MIR SINE MIR -69 139 38 351 0 0 0 chr5 18498897 18498936 -184586596 + (A)n Simple_repeat Simple_repeat 1 39 0 2353 75 0 3 chr5 18499622 18499928 -184585604 + AluSc SINE Alu 1 305 -4 193 283 65 22 chr5 18500007 18500099 -184585433 + L3 LINE CR1 1043 1138 -439 842 160 0 0 chr5 18500600 18500731 -184584801 - FLAM_A SINE Alu -2 131 1 365 225 36 36 chr5 18500954 18501065 -184584467 - MIR3 SINE MIR -1 207 97 2116 117 0 3 chr5 18504468 18504766 -184580766 - AluSq SINE Alu -16 297 1 27 29 0 0 chr5 18505469 18505503 -184580029 + AT_rich Low_complexity Low_complexity 1 34 0 187 139 0 0 chr5 18507067 18507103 -184578429 - L2 LINE L2 -24 3248 3213 1085 294 256 15 chr5 18507180 18508345 -184577187 + L2 LINE L2 463 1908 -1406 2175 99 7 3 chr5 18510701 18511003 -184574529 - AluSq SINE Alu -10 303 1 315 316 37 15 chr5 18511598 18511734 -184573798 - L1ME1 LINE L1 -18 6148 6010 1792 122 37 0 chr5 18511793 18512091 -184573441 + AluSx SINE Alu 2 309 0 2912 248 163 73 chr5 18512923 18513282 -184572250 + HAL1 LINE L1 117 443 -2064 1423 158 8 0 chr5 18513282 18513516 -184572016 - MER46A DNA MER2_type 0 236 1 2912 248 163 73 chr5 18513516 18514102 -184571430 + HAL1 LINE L1 443 975 -1532 1909 104 3 31 chr5 18514102 18514390 -184571142 + AluSp SINE Alu 2 281 -32 2912 248 163 73 chr5 18514390 18515257 -184570275 + HAL1 LINE L1 975 2092 -415 2469 56 3 0 chr5 18517222 18517527 -184568005 + AluY SINE Alu 1 306 -5 3804 216 92 20 chr5 18517944 18518944 -184566588 + L1MC3 LINE L1 6702 7773 -12 1371 166 109 7 chr5 18518955 18519238 -184566294 + AluJo SINE Alu 1 312 0 2047 130 3 0 chr5 18519610 18519911 -184565621 + AluSp SINE Alu 3 304 -9 245 310 82 6 chr5 18520706 18520864 -184564668 + MIR SINE MIR 16 185 -77 181 244 67 0 chr5 18520875 18520920 -184564612 + MER5C DNA MER1_type 31 78 -246 337 191 148 26 chr5 18521206 18521321 -184564211 + L1ME4a LINE L1 5990 6118 -3 1516 91 0 0 chr5 18521323 18521521 -184564011 - AluSc SINE Alu -16 293 96 290 287 30 0 chr5 18521889 18521990 -184563542 - L2 LINE L2 -491 2823 2720 561 204 116 33 chr5 18523273 18523454 -184562078 + L1MB2 LINE L1 5976 6171 0 389 255 161 21 chr5 18523723 18523915 -184561617 - MIR SINE MIR -23 239 21 2140 89 10 0 chr5 18524628 18524921 -184560611 - AluSx SINE Alu -12 300 5 991 81 7 0 chr5 18524923 18525059 -184560473 - AluSq/x SINE Alu -175 137 1 480 363 11 6 chr5 18528244 18528426 -184557106 - MIR SINE MIR -74 188 6 1782 154 173 23 chr5 18529657 18530083 -184555449 + LTR10A LTR ERV1 13 548 -61 458 100 0 0 chr5 18530764 18530834 -184554698 + L1MA3 LINE L1 6236 6305 0 1549 195 160 15 chr5 18531069 18531475 -184554057 - MLT1C LTR MaLR -2 465 1 288 0 0 0 chr5 18531579 18531611 -184553921 + (T)n Simple_repeat Simple_repeat 1 32 0 205 228 11 54 chr5 18532196 18532288 -184553244 + CT-rich Low_complexity Low_complexity 2 89 0 272 254 0 0 chr5 18532312 18532367 -184553165 + MER91A DNA MER1_type 1 55 -141 531 132 211 44 chr5 18534219 18534333 -184551199 + FLAM_C SINE Alu 1 133 0 215 360 81 0 chr5 18534512 18534623 -184550909 - L2 LINE L2 -21 3251 3132 2223 112 0 0 chr5 18534707 18535012 -184550520 + AluSx SINE Alu 1 305 -7 301 222 148 64 chr5 18535243 18535428 -184550104 + MIR3 SINE MIR 14 202 -6 180 176 0 0 chr5 18541859 18541893 -184543639 + CT-rich Low_complexity Low_complexity 2 35 0 3654 63 21 7 chr5 18541900 18542414 -184543118 - LTR8 LTR ERV1 -104 587 1 570 79 40 0 chr5 18542414 18542490 -184543042 - HUERS-P1 LTR ERV1 0 6263 6185 204 238 32 32 chr5 18542493 18542556 -184542976 - MIR SINE MIR -196 66 4 1506 147 77 25 chr5 18542870 18543155 -184542377 + AluJo SINE Alu 1 300 -12 286 337 151 35 chr5 18543387 18543586 -184541946 + MIR SINE MIR 34 255 -7 406 310 70 0 chr5 18544405 18544534 -184540998 + MIR3 SINE MIR 24 161 -47 182 234 43 0 chr5 18545936 18545983 -184539549 + L2 LINE L2 2995 3043 -229 1543 190 7 7 chr5 18547598 18547888 -184537644 + AluJo SINE Alu 1 290 -22 549 336 184 16 chr5 18548325 18548831 -184536701 - L2 LINE L2 -1366 1948 1358 216 0 0 0 chr5 18549368 18549392 -184536140 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2014 109 53 0 chr5 18550366 18550651 -184534881 + AluSq SINE Alu 1 300 -13 234 271 57 0 chr5 18550662 18550732 -184534800 - L3 LINE CR1 -23 1554 1481 226 79 53 0 chr5 18551263 18551301 -184534231 - L2 LINE L2 -2 3311 3272 35 0 0 0 chr5 18552986 18553021 -184532511 + AT_rich Low_complexity Low_complexity 1 35 0 3169 186 55 2 chr5 18553386 18554019 -184531513 + L1MB3 LINE L1 5517 6183 0 286 331 8 8 chr5 18554543 18554676 -184530856 - L1ME LINE L1 -355 5766 5634 184 245 61 0 chr5 18554841 18554890 -184530642 + L2 LINE L2 3221 3272 0 1807 164 3 22 chr5 18555040 18555352 -184530180 + AluJo SINE Alu 1 306 -6 540 176 0 0 chr5 18555353 18555455 -184530077 + GA-rich Low_complexity Low_complexity 5 106 0 2646 172 15 13 chr5 18556428 18556894 -184528638 + MLT1C LTR MaLR 1 467 0 773 238 144 61 chr5 18557054 18557335 -184528197 + LTR56 LTR ERV1 1 328 -117 2188 100 3 7 chr5 18557335 18557636 -184527896 - AluSx SINE Alu -12 300 1 773 238 144 61 chr5 18557636 18557765 -184527767 + LTR56 LTR ERV1 328 445 0 193 343 82 0 chr5 18558951 18559024 -184526508 - L2 LINE L2 -9 3263 3185 1947 120 40 0 chr5 18559380 18559680 -184525852 + AluSx SINE Alu 1 312 0 1743 249 55 38 chr5 18559685 18560212 -184525320 + MLT1H LTR MaLR 1 536 -13 1740 170 0 14 chr5 18561683 18561995 -184523537 + AluJo SINE Alu 1 308 0 29 28 0 0 chr5 18563060 18563096 -184522436 + AT_rich Low_complexity Low_complexity 1 36 0 186 103 0 0 chr5 18565198 18565227 -184520305 + (TG)n Simple_repeat Simple_repeat 1 29 0 1097 138 20 26 chr5 18565709 18565904 -184519628 - L1MC1 LINE L1 0 6333 6140 1691 90 65 29 chr5 18565906 18566185 -184519347 - Tigger7 DNA MER2_type 0 2487 2199 996 207 6 0 chr5 18566174 18566348 -184519184 - Tigger7 DNA MER2_type -2312 175 1 * 481 130 0 26 chr5 18566353 18566430 -184519102 - L1MC1 LINE L1 -194 6139 6065 610 91 0 0 chr5 18566855 18566932 -184518600 + LTR32 LTR ERVL 12 88 -383 272 170 0 57 chr5 18566912 18566965 -184518567 + LTR32 LTR ERVL 15 64 -407 * 1153 132 21 32 chr5 18566979 18567168 -184518364 + LTR32 LTR ERVL 285 471 0 2072 125 23 0 chr5 18567212 18567517 -184518015 + AluSx SINE Alu 1 312 0 368 177 35 71 chr5 18567534 18567647 -184517885 - MER104 DNA Tc2 -66 114 6 964 246 56 59 chr5 18568300 18568691 -184516841 + LTR16A1 LTR ERVL 1 390 -67 231 36 0 0 chr5 18568924 18568952 -184516580 + (T)n Simple_repeat Simple_repeat 1 28 0 307 316 11 11 chr5 18569144 18569239 -184516293 + MIR SINE MIR 20 114 -148 336 226 69 29 chr5 18569314 18569416 -184516116 + L2 LINE L2 3208 3313 0 1103 118 0 0 chr5 18570018 18570179 -184515353 - AluSg/x SINE Alu -19 291 131 534 205 67 80 chr5 18570221 18570445 -184515087 + L2 LINE L2 3092 3312 -1 683 136 10 0 chr5 18570516 18570619 -184514913 - MER44D DNA MER2_type -9 596 493 1442 144 4 61 chr5 18570631 18570909 -184514623 - AluJo SINE Alu -14 298 37 1152 96 126 0 chr5 18570910 18571108 -184514424 - MER44D DNA MER2_type -115 494 2 758 261 131 97 chr5 18571148 18572071 -184513461 - L2 LINE L2 -254 3059 2120 2113 112 0 10 chr5 18572573 18572885 -184512647 + AluSq SINE Alu 1 309 -4 438 346 120 37 chr5 18573979 18574976 -184510556 + L2 LINE L2 685 1764 -1550 276 371 21 14 chr5 18575045 18575188 -184510344 + L2 LINE L2 3122 3265 -7 2082 125 7 0 chr5 18575834 18576137 -184509395 + AluSx SINE Alu 1 305 -7 583 272 161 27 chr5 18577816 18578040 -184507492 - MIR SINE MIR -6 256 3 392 0 21 0 chr5 18578863 18578911 -184506621 + (CA)n Simple_repeat Simple_repeat 2 50 0 203 333 23 0 chr5 18579789 18579876 -184505656 - MIR SINE MIR -86 176 88 2479 139 45 17 chr5 18580796 18581200 -184504332 + MSTB LTR MaLR 1 415 -11 2198 98 30 7 chr5 18581346 18581642 -184503890 + AluSg SINE Alu 1 303 -7 334 340 6 19 chr5 18581820 18581982 -184503550 + L1ME4a LINE L1 4456 4615 -1531 501 293 84 73 chr5 18582147 18582605 -184502927 + L1ME4a LINE L1 5374 5844 -277 2438 93 0 0 chr5 18582605 18582906 -184502626 + AluSx SINE Alu 1 301 -11 501 293 84 73 chr5 18582906 18583094 -184502438 + L1ME4a LINE L1 5844 6028 -93 2227 101 3 3 chr5 18584519 18584807 -184500725 + AluSx SINE Alu 1 288 -24 1921 133 7 0 chr5 18585304 18585582 -184499950 - AluSx SINE Alu -32 280 1 1880 148 0 7 chr5 18586204 18586482 -184499050 - AluSx SINE Alu -36 276 1 229 356 28 34 chr5 18586512 18586689 -184498843 - MIR SINE MIR -30 232 57 191 244 0 0 chr5 18587444 18587485 -184498047 - L2 LINE L2 -19 3253 3213 2228 95 0 7 chr5 18588265 18588548 -184496984 + AluSq SINE Alu 1 281 -32 742 106 7 7 chr5 18588548 18588699 -184496833 + (TA)n Simple_repeat Simple_repeat 2 152 0 2012 128 3 33 chr5 18591139 18591444 -184494088 + AluSx SINE Alu 1 296 -16 15377 121 22 10 chr5 18594077 18596291 -184489241 + Tigger1 DNA MER2_type 58 2302 -116 1938 166 7 3 chr5 18596291 18596598 -184488934 - AluJo SINE Alu -4 308 1 15377 121 22 10 chr5 18596598 18596716 -184488816 + Tigger1 DNA MER2_type 2302 2417 -1 242 299 174 12 chr5 18597394 18597561 -184487971 - MER112 DNA MER1_type -35 225 32 319 349 105 33 chr5 18597652 18598203 -184487329 + L2 LINE L2 2242 2832 -482 258 143 0 0 chr5 18598445 18598487 -184487045 + L2 LINE L2 3265 3306 -7 299 235 53 46 chr5 18598590 18598767 -184486765 - MER112 DNA MER1_type 0 260 2 2133 144 0 6 chr5 18598839 18599152 -184486380 - AluSx SINE Alu -1 311 1 2318 96 0 0 chr5 18599475 18599768 -184485764 - AluSq SINE Alu -20 293 1 232 219 14 41 chr5 18599771 18599844 -184485688 - MIR SINE MIR -116 146 76 1326 77 6 0 chr5 18600560 18600729 -184484803 + MLT2A1 LTR ERVL 1 170 -274 1251 163 75 3 chr5 18601694 18601989 -184483543 + MER33 DNA MER1_type 5 320 -4 2284 63 42 3 chr5 18602358 18602644 -184482888 + AluY SINE Alu 1 297 -14 411 38 0 0 chr5 18603945 18603998 -184481534 + (TG)n Simple_repeat Simple_repeat 1 53 0 437 213 46 0 chr5 18604280 18604388 -184481144 - MER81 DNA DNA -1 113 1 483 279 82 0 chr5 18607574 18607721 -184477811 + MIR SINE MIR 13 171 -91 2217 107 7 7 chr5 18607938 18608236 -184477296 + AluSx SINE Alu 1 298 -14 452 250 14 21 chr5 18608259 18608403 -184477129 + MIR SINE MIR 114 256 -6 15210 40 12 0 chr5 18609117 18611711 -184473821 + L1PA5 LINE L1 3552 6151 -3 917 62 0 23 chr5 18611712 18611840 -184473692 + L1PA4 LINE L1 6031 6155 0 29 28 0 0 chr5 18611840 18611876 -184473656 + AT_rich Low_complexity Low_complexity 1 36 0 203 333 23 0 chr5 18612764 18612851 -184472681 - MIR SINE MIR -86 176 88 2479 139 45 17 chr5 18613771 18614175 -184471357 + MSTB LTR MaLR 1 415 -11 2198 98 30 7 chr5 18614321 18614617 -184470915 + AluSg SINE Alu 1 303 -7 334 340 6 19 chr5 18614795 18614957 -184470575 + L1ME4a LINE L1 4456 4615 -1531 504 293 84 73 chr5 18615123 18615581 -184469951 + L1ME4a LINE L1 5374 5844 -277 2427 96 0 0 chr5 18615581 18615882 -184469650 + AluSx SINE Alu 1 301 -11 504 293 84 73 chr5 18615882 18616070 -184469462 + L1ME4a LINE L1 5844 6028 -93 2082 113 17 7 chr5 18617497 18617797 -184467735 + AluSx SINE Alu 1 303 -9 2049 113 14 0 chr5 18618636 18618911 -184466621 + AluSx SINE Alu 1 279 -33 391 0 0 0 chr5 18618911 18618953 -184466579 + LTR17 LTR ERV1 1 42 -738 2040 98 4 4 chr5 18619114 18619378 -184466154 - AluSq SINE Alu -49 264 1 329 193 211 26 chr5 18619747 18619861 -184465671 - AluJo SINE Alu -163 139 5 258 213 7 37 chr5 18620251 18620387 -184465145 + CT-rich Low_complexity Low_complexity 1 132 0 398 136 53 24 chr5 18620409 18620578 -184464954 + CT-rich Low_complexity Low_complexity 2 175 0 193 232 33 20 chr5 18620554 18620705 -184464827 + T-rich Low_complexity Low_complexity 5 157 0 * 372 73 0 18 chr5 18620769 18620824 -184464708 + MLT2A2 LTR ERVL 400 453 0 2194 132 0 0 chr5 18622350 18622653 -184462879 - AluSx SINE Alu -7 305 3 382 196 131 65 chr5 18623341 18623494 -184462038 - L1ME4a LINE L1 -3 6118 5956 900 97 0 0 chr5 18623723 18623837 -184461695 + AluJb SINE Alu 1 114 -198 6771 11 0 1 chr5 18623839 18624589 -184460943 + L1HS LINE L1 5407 6155 0 207 188 0 0 chr5 18624589 18624637 -184460895 + A-rich Low_complexity Low_complexity 1 48 0 892 170 31 6 chr5 18624638 18624797 -184460735 + AluJb SINE Alu 122 284 -28 2261 97 3 7 chr5 18625401 18625699 -184459833 - AluSq SINE Alu -16 297 1 216 67 0 0 chr5 18627358 18627388 -184458144 + (A)n Simple_repeat Simple_repeat 1 30 0 1020 113 113 87 chr5 18627758 18627988 -184457544 + MER31B LTR ERV1 1 236 -230 349 130 0 43 chr5 18627973 18628042 -184457490 + MER31B LTR ERV1 401 466 0 * 1593 187 0 4 chr5 18628231 18628493 -184457039 + AluJo SINE Alu 33 293 -19 217 245 235 20 chr5 18629456 18629554 -184455978 + L2 LINE L2 3137 3255 -17 1801 150 14 31 chr5 18629559 18629852 -184455680 + AluJo SINE Alu 1 288 -24 202 260 91 26 chr5 18631487 18631564 -184453968 + MIR3 SINE MIR 89 170 -38 21 0 0 0 chr5 18632211 18632232 -184453300 + AT_rich Low_complexity Low_complexity 1 21 0 1380 142 0 39 chr5 18633108 18633341 -184452191 + AluSg/x SINE Alu 86 309 0 2442 90 0 10 chr5 18633605 18633916 -184451616 + AluSq SINE Alu 1 308 -5 1736 181 0 0 chr5 18634830 18635141 -184450391 + AluJb SINE Alu 1 311 0 351 0 0 0 chr5 18635147 18635186 -184450346 + (CA)n Simple_repeat Simple_repeat 2 40 0 1788 156 125 51 chr5 18635599 18636030 -184449502 - MER31B LTR ERV1 -3 463 1 1790 158 10 10 chr5 18636062 18636359 -184449173 + AluJb SINE Alu 1 297 -15 1232 160 78 3 chr5 18637347 18637641 -184447891 + MER33 DNA MER1_type 5 320 -4 2324 60 42 0 chr5 18638010 18638293 -184447239 + AluY SINE Alu 1 295 -16 2189 124 0 10 chr5 18638890 18639197 -184446335 + AluSx SINE Alu 1 304 -8 2163 141 0 3 chr5 18640592 18640898 -184444634 - AluJb SINE Alu -7 305 1 328 242 11 22 chr5 18641713 18641804 -184443728 + MIR SINE MIR 108 197 -65 665 217 104 64 chr5 18642068 18642317 -184443215 + MLT1J2 LTR MaLR 21 279 -171 445 284 83 54 chr5 18642471 18642675 -184442857 - MIR SINE MIR -41 221 12 1755 111 15 114 chr5 18643455 18643805 -184441727 + AluSp SINE Alu 1 313 0 216 158 0 0 chr5 18643806 18643844 -184441688 + T-rich Low_complexity Low_complexity 3 40 0 2292 98 3 3 chr5 18644150 18644455 -184441077 + AluSg SINE Alu 1 305 -5 375 41 0 0 chr5 18645756 18645805 -184439727 + (TG)n Simple_repeat Simple_repeat 1 49 0 437 213 46 0 chr5 18646087 18646195 -184439337 - MER81 DNA DNA -1 113 1 464 274 89 0 chr5 18649381 18649527 -184436005 + MIR SINE MIR 13 171 -91 2217 107 7 7 chr5 18649744 18650042 -184435490 + AluSx SINE Alu 1 298 -14 477 255 7 21 chr5 18650065 18650210 -184435322 + MIR SINE MIR 114 256 -6 15320 39 12 0 chr5 18650924 18653518 -184432014 + L1PA5 LINE L1 3552 6151 -3 947 55 0 23 chr5 18653519 18653647 -184431885 + L1PA4 LINE L1 6031 6155 0 29 28 0 0 chr5 18653647 18653683 -184431849 + AT_rich Low_complexity Low_complexity 1 36 0 1782 175 14 20 chr5 18656498 18656541 -184428991 - L1MB3 LINE L1 0 6183 6141 2155 140 0 0 chr5 18656541 18656841 -184428691 - AluSx SINE Alu -11 301 2 1782 175 14 20 chr5 18656841 18657152 -184428380 - L1MB3 LINE L1 -42 6141 5831 2092 151 3 0 chr5 18658416 18658721 -184426811 - AluSx SINE Alu -6 306 1 180 0 0 0 chr5 18658795 18658815 -184426717 + (A)n Simple_repeat Simple_repeat 1 20 0 192 77 0 0 chr5 18660590 18660616 -184424916 + (TA)n Simple_repeat Simple_repeat 2 27 0 2447 89 0 10 chr5 18661092 18661405 -184424127 - AluSq SINE Alu -3 310 1 1894 144 6 51 chr5 18661958 18662271 -184423261 + AluSx SINE Alu 1 299 -13 2035 116 14 0 chr5 18663109 18663384 -184422148 + AluSx SINE Alu 1 279 -33 4971 92 10 34 chr5 18663384 18664110 -184421422 + LTR17 LTR ERV1 1 708 -72 1285 77 0 12 chr5 18664192 18664362 -184421170 - LTR17 LTR ERV1 -612 168 1 1930 168 7 0 chr5 18667248 18667546 -184417986 + AluJo SINE Alu 1 300 -12 577 109 0 20 chr5 18667766 18667867 -184417665 - L1PA13 LINE L1 -5 6158 6060 1953 163 0 3 chr5 18668542 18668837 -184416695 + AluJb SINE Alu 1 294 -18 435 110 0 0 chr5 18668906 18668979 -184416553 - AluSp/q SINE Alu -6 307 235 1665 131 55 70 chr5 18669646 18669958 -184415574 + AluJo SINE Alu 1 307 -5 206 360 93 22 chr5 18670048 18670370 -184415162 + L2 LINE L2 2560 2904 -410 288 310 108 8 chr5 18670546 18670675 -184414857 + L2 LINE L2 3172 3313 0 228 67 0 0 chr5 18671080 18671110 -184414422 + (A)n Simple_repeat Simple_repeat 1 30 0 607 128 4 25 chr5 18671282 18671519 -184414013 + AluJ SINE Alu 1 312 0 263 247 104 0 chr5 18671661 18671738 -184413794 - MIR SINE MIR -113 149 65 2266 105 16 10 chr5 18672622 18672926 -184412606 + AluSq SINE Alu 2 307 -6 390 245 93 0 chr5 18673205 18673344 -184412188 + L1ME2 LINE L1 5648 5799 -322 1200 108 154 0 chr5 18673393 18673588 -184411944 - L1PB2 LINE L1 -2 6149 5925 2033 118 0 4 chr5 18673683 18674018 -184411514 + AluSg SINE Alu 2 335 0 1928 177 67 10 chr5 18674262 18674652 -184410880 - L1MB4 LINE L1 0 6180 5769 604 181 78 42 chr5 18674896 18675062 -184410470 + L1ME2 LINE L1 5963 6134 -30 293 175 0 0 chr5 18676010 18676067 -184409465 - AluSq SINE Alu 0 301 245 1984 97 19 0 chr5 18676072 18676329 -184409203 - AluSq SINE Alu -51 262 1 2203 120 7 0 chr5 18677205 18677505 -184408027 + AluSq SINE Alu 1 302 -11 21 0 0 0 chr5 18678464 18678485 -184407047 + AT_rich Low_complexity Low_complexity 1 21 0 1744 177 10 0 chr5 18679183 18679482 -184406050 + AluJo SINE Alu 1 302 -10 209 316 10 20 chr5 18680099 18680197 -184405335 + (CATA)n Simple_repeat Simple_repeat 4 100 0 * 359 255 115 67 chr5 18680186 18680229 -184405303 + L1ME4a LINE L1 5902 5941 -180 2317 87 3 0 chr5 18680229 18680517 -184405015 + AluSp SINE Alu 1 289 -24 30 27 0 0 chr5 18680517 18680554 -184404978 + AT_rich Low_complexity Low_complexity 1 37 0 359 255 115 67 chr5 18680554 18680681 -184404851 + L1ME4a LINE L1 5940 6119 -2 1779 88 4 0 chr5 18681314 18681553 -184403979 - AluSq SINE Alu -72 241 2 1801 132 55 0 chr5 18682138 18682427 -184403105 + AluJb SINE Alu 1 305 -7 331 240 0 37 chr5 18682520 18682666 -184402866 + MIR SINE MIR 49 260 -2 2384 15 0 0 chr5 18682803 18683071 -184402461 - AluYb8 SINE Alu -14 304 37 1830 124 3 58 chr5 18683627 18683957 -184401575 - AluSx SINE Alu 0 312 1 651 79 0 264 chr5 18683957 18684135 -184401397 - AluJo/FLAM SINE Alu -171 131 1 336 175 0 0 chr5 18686008 18686071 -184399461 + A-rich Low_complexity Low_complexity 1 63 0 33 80 0 0 chr5 18686768 18686843 -184398689 + GC_rich Low_complexity Low_complexity 1 75 0 1960 184 126 2 chr5 18688402 18688816 -184396716 - L1MB5 LINE L1 0 6174 5710 22 0 0 0 chr5 18689216 18689238 -184396294 + AT_rich Low_complexity Low_complexity 1 22 0 383 226 68 9 chr5 18689362 18689480 -184396052 - MLT1J2 LTR MaLR -278 233 70 795 296 61 20 chr5 18689720 18690496 -184395036 + HERV16 LTR ERVL 1607 2433 -2563 1099 229 66 104 chr5 18691723 18692157 -184393375 - MLT1D LTR MaLR 0 505 43 700 170 23 53 chr5 18692260 18692431 -184393101 - L1MB1 LINE L1 -66 6102 5937 2069 102 0 23 chr5 18692484 18692787 -184392745 + AluSx SINE Alu 1 296 -16 444 155 0 155 chr5 18693169 18693440 -184392092 - AluJo SINE Alu -80 232 4 262 229 0 0 chr5 18694079 18694127 -184391405 + MIR3 SINE MIR 112 159 -49 185 207 183 24 chr5 18695553 18695635 -184389897 - MIR SINE MIR -60 148 54 2328 82 0 0 chr5 18695712 18696016 -184389516 + AluY SINE Alu 2 305 -6 2064 163 34 11 chr5 18696587 18696944 -184388588 + MLT1A1 LTR MaLR 1 365 0 189 278 0 19 chr5 18697039 18697093 -184388439 - MIR3 SINE MIR -5 203 151 2011 95 7 3 chr5 18698441 18698749 -184386783 - AluSp SINE Alu 0 309 1 650 200 50 22 chr5 18698953 18699133 -184386399 - MER5A DNA MER1_type -1 188 4 3172 29 19 9 chr5 18699492 18699973 -184385559 + L1P2 LINE L1 5185 5670 -485 4244 127 34 0 chr5 18700121 18700805 -184384727 - L1PA13 LINE L1 -146 6017 5311 1883 102 0 0 chr5 18702055 18702310 -184383222 - AluSx SINE Alu -57 255 1 500 282 56 49 chr5 18702313 18702597 -184382935 + HAL1 LINE L1 352 637 -1870 451 276 283 14 chr5 18703112 18703554 -184381978 + L2 LINE L2 233 793 -2521 2200 88 13 3 chr5 18703570 18703877 -184381655 - AluY SINE Alu -1 310 1 1204 182 84 65 chr5 18704421 18704729 -184380803 + MLT2B1 LTR ERVL 206 519 -1 2167 67 21 3 chr5 18704878 18705160 -184380372 + L1PA5 LINE L1 5866 6152 -2 1079 218 45 73 chr5 18705329 18705567 -184379965 + L1ME2 LINE L1 5662 5884 -280 1925 95 4 0 chr5 18705567 18705831 -184379701 + AluSx SINE Alu 35 299 -13 1079 218 45 73 chr5 18705831 18706033 -184379499 + L1ME2 LINE L1 5884 6090 -74 210 347 0 20 chr5 18706446 18706544 -184378988 + GA-rich Low_complexity Low_complexity 2 97 0 196 280 90 80 chr5 18706839 18706939 -184378593 - MER5A DNA MER1_type -35 154 54 * 244 224 20 0 chr5 18706927 18706976 -184378556 - L2 LINE L2 -7 3306 3257 354 308 75 0 chr5 18707320 18707479 -184378053 + MER112 DNA MER1_type 74 244 -16 2108 108 3 0 chr5 18710083 18710380 -184375152 - AluSx SINE Alu -13 299 2 2382 78 3 0 chr5 18710769 18711077 -184374455 + AluSc SINE Alu 1 309 0 1613 166 38 3 chr5 18711960 18712250 -184373282 + AluJo SINE Alu 5 304 -8 1972 123 17 0 chr5 18713409 18713702 -184371830 + AluSx SINE Alu 5 302 -10 2250 160 59 7 chr5 18714146 18714552 -184370980 + MSTA LTR MaLR 1 427 -1 280 216 62 21 chr5 18715334 18715431 -184370101 + MER104 DNA Tc2 35 135 -45 28 48 0 0 chr5 18715724 18715766 -184369766 + AT_rich Low_complexity Low_complexity 1 42 0 1178 128 57 18 chr5 18715859 18716086 -184369446 - L1PB1 LINE L1 -2 6149 5914 261 177 108 54 chr5 18716312 18716442 -184369090 + MLT1F LTR MaLR 189 325 -217 194 350 100 0 chr5 18716537 18716657 -184368875 + L2 LINE L2 2287 2418 -896 1621 178 69 72 chr5 18716682 18717049 -184368483 + MLT2D LTR ERVL 2 369 -45 416 19 0 19 chr5 18717049 18717103 -184368429 + (CA)n Simple_repeat Simple_repeat 1 53 0 1621 178 69 72 chr5 18717103 18717139 -184368393 + MLT2D LTR ERVL 369 404 -10 183 156 0 0 chr5 18718135 18718167 -184367365 + (TG)n Simple_repeat Simple_repeat 2 33 0 345 318 74 42 chr5 18718351 18718568 -184366964 + L2 LINE L2 3045 3268 -4 800 252 102 15 chr5 18720172 18720446 -184365086 - MLT1H LTR MaLR -243 306 9 1581 176 89 35 chr5 18720521 18720925 -184364607 + MSTB LTR MaLR 1 426 0 408 174 62 104 chr5 18721213 18721357 -184364175 + MLT1J LTR MaLR 1 138 -373 714 248 207 51 chr5 18721357 18721865 -184363667 + MLT1G LTR MaLR 1 587 -3 228 275 145 15 chr5 18721868 18721999 -184363533 + MLT1G-int LTR MaLR 2 149 -1222 1048 227 59 18 chr5 18722504 18722790 -184362742 - LTR16C LTR ERVL 0 491 194 1958 240 45 6 chr5 18722993 18723509 -184362023 + MER82 DNA MER2_type 1 536 -117 2063 124 3 0 chr5 18723958 18724256 -184361276 + AluSx SINE Alu 1 299 -13 1701 130 10 33 chr5 18725176 18725476 -184360056 - AluSx SINE Alu -12 300 8 357 93 0 0 chr5 18725679 18725733 -184359799 + Alu SINE Alu 247 300 0 7137 43 28 0 chr5 18725902 18727451 -184358081 - L1PA4 LINE L1 -18 6137 4563 1969 106 57 0 chr5 18728248 18728531 -184357001 - AluSg SINE Alu -11 299 1 557 239 14 7 chr5 18728731 18728873 -184356659 - L2 LINE L2 -319 2994 2852 1926 202 14 11 chr5 18729804 18730165 -184355367 + MLT1A1 LTR MaLR 1 362 -3 1892 125 17 3 chr5 18731130 18731426 -184354106 - AluSx SINE Alu -12 300 1 1613 153 28 10 chr5 18731649 18731937 -184353595 + AluSp SINE Alu 1 293 -20 21 57 0 0 chr5 18731972 18732007 -184353525 + AT_rich Low_complexity Low_complexity 1 35 0 16168 55 24 4 chr5 18732557 18734683 -184350849 + L1P LINE L1 593 2760 -3386 2777 146 24 0 chr5 18736291 18736744 -184348788 - L1MC2 LINE L1 -234 6110 5647 276 292 219 28 chr5 18736760 18737182 -184348350 - L3 LINE CR1 -608 969 423 323 275 22 11 chr5 18737639 18737730 -184347802 - MER45C DNA AcHobo -378 575 484 881 301 127 29 chr5 18737920 18738164 -184347368 + L2 LINE L2 2425 2644 -669 1793 152 10 3 chr5 18738164 18738467 -184347065 + AluSx SINE Alu 1 305 -7 881 301 127 29 chr5 18738467 18738781 -184346751 + L2 LINE L2 2644 3035 -278 7369 71 8 15 chr5 18738783 18739770 -184345762 + L1P LINE L1 1 980 -5166 23 68 0 0 chr5 18739954 18739998 -184345534 + AT_rich Low_complexity Low_complexity 1 44 0 912 134 6 137 chr5 18739999 18740313 -184345219 - AluSx SINE Alu -28 284 12 22 35 0 0 chr5 18740847 18740876 -184344656 + AT_rich Low_complexity Low_complexity 1 29 0 189 237 0 0 chr5 18741192 18741230 -184344302 + L3 LINE CR1 925 962 -615 1104 32 0 0 chr5 18741539 18741684 -184343848 + L1PA10 LINE L1 6025 6169 0 382 18 36 0 chr5 18741944 18741999 -184343533 + (TG)n Simple_repeat Simple_repeat 2 58 0 1024 192 42 9 chr5 18742086 18742300 -184343232 + MER45C DNA AcHobo 3 223 -730 1309 174 15 104 chr5 18742490 18742817 -184342715 - AluJb SINE Alu -4 298 1 208 272 97 29 chr5 18743135 18743238 -184342294 - L2 LINE L2 -238 3034 2925 557 271 133 57 chr5 18743268 18743688 -184341844 - L2 LINE L2 -5 3267 2816 402 266 87 52 chr5 18744372 18744545 -184340987 - MIR SINE MIR -6 256 78 1177 254 38 83 chr5 18745258 18745744 -184339788 - L1MC5 LINE L1 -516 7445 6993 2261 127 30 25 chr5 18745744 18746105 -184339427 + THE1B LTR MaLR 1 363 -1 1177 254 38 83 chr5 18746105 18746253 -184339279 - L1MC5 LINE L1 -968 6993 6840 484 236 139 6 chr5 18746665 18746830 -184338702 - L3 LINE CR1 -7 1570 1384 469 309 115 20 chr5 18746871 18747166 -184338366 - L2 LINE L2 -37 3235 2913 591 242 129 0 chr5 18747288 18747482 -184338050 - MIR SINE MIR -37 225 7 2105 86 38 0 chr5 18749705 18749996 -184335536 - AluY SINE Alu -9 302 1 711 219 62 21 chr5 18750300 18750492 -184335040 - MER58A DNA MER1_type -3 221 22 13769 34 16 7 chr5 18750636 18752394 -184333138 - L1P LINE L1 -1550 4596 2822 739 259 28 53 chr5 18752668 18752915 -184332617 - MLT1F1 LTR MaLR -326 241 1 343 276 42 121 chr5 18752928 18753283 -184332249 - MLT1F1-int LTR MaLR -16 1355 1029 2037 129 3 0 chr5 18753612 18753907 -184331625 + AluSx SINE Alu 1 296 -16 226 191 11 85 chr5 18754369 18754463 -184331069 - HsTC2 DNA Tc2 -1811 87 1 479 236 9 9 chr5 18755059 18755165 -184330367 + MER94 DNA DNA 9 114 -20 1790 194 23 127 chr5 18755904 18756511 -184329021 + MER21B LTR ERV1 1 544 -319 1392 181 4 11 chr5 18756514 18756790 -184328742 + AluJo SINE Alu 1 274 -38 229 101 11 79 chr5 18756793 18756882 -184328650 + (TG)n Simple_repeat Simple_repeat 2 84 0 1021 242 125 45 chr5 18757732 18758181 -184327351 + L1MC4 LINE L1 6505 6924 -884 1163 155 5 23 chr5 18758198 18758417 -184327115 + AluJb SINE Alu 83 297 -15 770 304 117 50 chr5 18758422 18758822 -184326710 + L1MC4 LINE L1 7107 7479 -563 1914 139 0 3 chr5 18758822 18759123 -184326409 - AluSq SINE Alu -13 300 1 1822 129 61 0 chr5 18759123 18759402 -184326130 - AluSx SINE Alu -15 297 1 770 304 117 50 chr5 18759402 18759741 -184325791 + L1MC4 LINE L1 7479 7916 -126 383 0 0 21 chr5 18759741 18759789 -184325743 + (TG)n Simple_repeat Simple_repeat 2 48 0 770 304 117 50 chr5 18759789 18759918 -184325614 + L1MC4 LINE L1 7916 8035 -7 2220 109 0 0 chr5 18761059 18761361 -184324171 - AluSx SINE Alu -10 302 1 379 253 163 11 chr5 18762155 18762345 -184323187 - L2 LINE L2 -117 3196 2978 22 0 0 0 chr5 18764438 18764460 -184321072 + AT_rich Low_complexity Low_complexity 1 22 0 1130 172 23 18 chr5 18766233 18766454 -184319078 - AluJb SINE Alu -10 302 81 681 205 94 12 chr5 18766608 18766779 -184318753 + MER21B LTR ERV1 622 806 -57 2318 183 16 55 chr5 18766800 18766849 -184318683 - LTR54 LTR ERV1 0 510 461 2419 61 0 10 chr5 18766849 18767162 -184318370 + AluY SINE Alu 1 310 -1 2318 183 16 55 chr5 18767162 18767625 -184317907 - LTR54 LTR ERV1 -49 461 18 746 100 0 0 chr5 18767625 18767725 -184317807 + HY1 scRNA scRNA 1 100 -12 1486 129 125 4 chr5 18767758 18768022 -184317510 - AluJb SINE Alu -16 296 1 275 331 106 7 chr5 18768825 18768967 -184316565 + L2 LINE L2 2264 2419 -895 188 83 0 28 chr5 18769936 18769972 -184315560 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 1492 107 0 41 chr5 18770180 18770450 -184315082 + AluSq SINE Alu 37 295 -18 2367 70 0 0 chr5 18770501 18770799 -184314733 + AluY SINE Alu 1 298 -13 21 57 0 0 chr5 18770933 18770968 -184314564 + AT_rich Low_complexity Low_complexity 1 35 0 790 144 50 29 chr5 18771358 18771497 -184314035 - FLAM_C SINE Alu 0 143 2 1991 117 0 3 chr5 18771502 18771792 -184313740 - AluSg SINE Alu -21 289 1 1877 166 0 0 chr5 18772465 18772767 -184312765 - AluSx SINE Alu -10 302 1 24 0 0 0 chr5 18773632 18773656 -184311876 + AT_rich Low_complexity Low_complexity 1 24 0 2307 80 0 3 chr5 18773733 18774034 -184311498 - AluSq SINE Alu -13 300 1 252 329 108 13 chr5 18775326 18775484 -184310048 - MIR SINE MIR -70 192 20 308 137 40 63 chr5 18775667 18775691 -184309841 + MLT1H LTR MaLR 477 500 -49 1927 119 13 7 chr5 18775691 18775994 -184309538 + AluSp SINE Alu 1 305 -8 308 137 40 63 chr5 18775994 18776057 -184309475 + MLT1H LTR MaLR 500 549 0 847 194 4 106 chr5 18777030 18777257 -184308275 - MER63A DNA MER1_type 0 210 7 1798 105 49 0 chr5 18777493 18777759 -184307773 + AluSg SINE Alu 1 279 -31 222 333 68 68 chr5 18777800 18777992 -184307540 - L2 LINE L2 -524 2790 2599 836 278 28 0 chr5 18778664 18778880 -184306652 - MER58A DNA MER1_type 0 224 3 1870 164 7 0 chr5 18779215 18779525 -184306007 - AluJo SINE Alu 0 312 1 2394 125 14 6 chr5 18779554 18779915 -184305617 + THE1B LTR MaLR 1 364 0 226 233 0 0 chr5 18780215 18780275 -184305257 + T-rich Low_complexity Low_complexity 1 60 0 822 199 13 0 chr5 18780471 18780622 -184304910 + AluJb SINE Alu 140 292 -20 1071 164 19 56 chr5 18780640 18780853 -184304679 - MER2 DNA MER2_type -140 205 1 1565 250 59 27 chr5 18781994 18782551 -184302981 + L1MC4a LINE L1 5254 5828 -1980 25 51 0 0 chr5 18782782 18782821 -184302711 + AT_rich Low_complexity Low_complexity 1 39 0 2519 45 0 10 chr5 18782826 18783138 -184302394 + AluY SINE Alu 1 309 -2 21 0 0 0 chr5 18784295 18784316 -184301216 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr5 18784481 18784505 -184301027 + GC_rich Low_complexity Low_complexity 1 24 0 2120 116 73 14 chr5 18785071 18785425 -184300107 - THE1C LTR MaLR 0 375 1 191 254 34 34 chr5 18787136 18787195 -184298337 + L2 LINE L2 3200 3258 -14 292 227 19 63 chr5 18787212 18787345 -184298187 - L1ME3A LINE L1 -4 6166 6038 415 181 14 35 chr5 18787819 18787963 -184297569 + GA-rich Low_complexity Low_complexity 1 141 0 198 0 0 0 chr5 18788528 18788550 -184296982 + (CCG)n Simple_repeat Simple_repeat 2 23 0 203 213 27 40 chr5 18788560 18788635 -184296897 + G-rich Low_complexity Low_complexity 1 74 0 31 107 0 0 chr5 18788672 18788794 -184296738 + GC_rich Low_complexity Low_complexity 1 122 0 705 179 179 0 chr5 18789598 18789749 -184295783 + MER45A DNA AcHobo 1 178 0 837 132 62 7 chr5 18789973 18790138 -184295394 + AluY SINE Alu 136 308 0 26 30 0 0 chr5 18790953 18790986 -184294546 + AT_rich Low_complexity Low_complexity 1 33 0 182 36 0 36 chr5 18791466 18791494 -184294038 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1964 118 0 20 chr5 18791496 18791793 -184293739 - AluSq SINE Alu -20 293 3 313 232 99 49 chr5 18792027 18792169 -184293363 + L1ME4a LINE L1 5956 6104 -17 23 33 0 0 chr5 18792169 18792199 -184293333 + AT_rich Low_complexity Low_complexity 1 30 0 660 237 147 30 chr5 18793235 18793383 -184292149 + L1MC4a LINE L1 5807 5936 -1872 315 0 0 0 chr5 18793383 18793418 -184292114 + (TG)n Simple_repeat Simple_repeat 1 35 0 660 237 147 30 chr5 18793418 18793602 -184291930 + L1MC4a LINE L1 5936 6178 -1630 21 0 0 0 chr5 18794203 18794224 -184291308 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr5 18794711 18794735 -184290797 + (A)n Simple_repeat Simple_repeat 1 24 0 3568 134 13 19 chr5 18794971 18795153 -184290379 + MER1A DNA MER1_type 2 184 -2516 2345 80 0 0 chr5 18795153 18795453 -184290079 - AluSc SINE Alu -9 300 1 3568 134 13 19 chr5 18795453 18795799 -184289733 + MER1A DNA MER1_type 184 527 0 192 40 0 0 chr5 18795912 18795937 -184289595 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 894 141 0 0 chr5 18795940 18796082 -184289450 - AluSg/x SINE Alu -39 273 132 841 147 0 37 chr5 18796298 18796434 -184289098 + AluJo SINE Alu 1 131 -171 368 269 90 22 chr5 18796522 18796656 -184288876 - MIR SINE MIR -17 245 103 264 313 0 0 chr5 18796675 18796742 -184288790 - L3 LINE CR1 -3 1574 1508 839 220 0 0 chr5 18796767 18796935 -184288597 + AluJo SINE Alu 137 304 -8 267 182 30 15 chr5 18797547 18797613 -184287919 - MLT1K LTR MaLR -339 249 183 298 274 36 0 chr5 18797923 18798007 -184287525 - MLT1D LTR MaLR -418 87 1 821 129 41 18 chr5 18798007 18798033 -184287499 - Charlie5 DNA MER1_type -55 2569 2545 2270 97 0 0 chr5 18798033 18798342 -184287190 + AluSg SINE Alu 1 309 -1 821 129 41 18 chr5 18798342 18798485 -184287047 - Charlie5 DNA MER1_type -79 2545 2396 284 200 147 0 chr5 18799217 18799292 -184286240 - MLT1K LTR MaLR -320 268 183 2430 98 48 25 chr5 18800075 18800431 -184285101 + THE1B LTR MaLR 1 364 0 192 273 36 0 chr5 18801158 18801213 -184284319 - MIR SINE MIR -27 235 179 * 716 226 177 16 chr5 18801200 18801443 -184284089 - L2 LINE L2 -2 3311 3030 1578 287 136 19 chr5 18801543 18802321 -184283211 - L2 LINE L2 -550 2764 1896 181 209 23 0 chr5 18802320 18802363 -184283169 - MIR SINE MIR -82 180 137 * 2125 101 9 22 chr5 18802373 18802689 -184282843 - AluSx SINE Alu 0 312 1 359 309 0 137 chr5 18802689 18802750 -184282782 - MIR SINE MIR -62 146 78 3746 149 17 46 chr5 18802750 18803303 -184282229 + L1MA8 LINE L1 5568 6135 -156 2083 102 7 7 chr5 18803303 18803598 -184281934 + AluY SINE Alu 1 295 -16 3746 149 17 46 chr5 18803598 18803663 -184281869 + L1MA8 LINE L1 6135 6200 -91 1934 144 0 0 chr5 18803663 18803954 -184281578 - AluSx SINE Alu -21 291 1 3746 149 17 46 chr5 18803954 18804040 -184281492 + L1MA8 LINE L1 6200 6253 -38 2282 72 0 3 chr5 18804040 18804332 -184281200 - AluY SINE Alu -20 291 1 3746 149 17 46 chr5 18804332 18804370 -184281162 + L1MA8 LINE L1 6253 6291 0 359 309 0 137 chr5 18804370 18804478 -184281054 - MIR SINE MIR -130 78 5 1457 171 61 11 chr5 18805229 18805509 -184280023 - AluJb SINE Alu -15 297 4 1121 261 68 30 chr5 18805533 18805959 -184279573 - MLT1C LTR MaLR -3 464 23 285 256 143 57 chr5 18806236 18806466 -184279066 + MIR SINE MIR 6 255 -7 198 0 0 0 chr5 18807199 18807221 -184278311 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 503 291 146 0 chr5 18807536 18807694 -184277838 - MER5A DNA MER1_type 0 189 9 2125 124 13 0 chr5 18807816 18808122 -184277410 - AluSx SINE Alu -2 310 1 1883 154 55 19 chr5 18808463 18808788 -184276744 + MER1B DNA MER1_type 1 337 0 300 316 92 40 chr5 18809025 18809199 -184276333 - MIR SINE MIR -70 192 10 2079 106 0 0 chr5 18809398 18809711 -184275821 + AluSx SINE Alu 1 313 0 1625 86 5 5 chr5 18809822 18810075 -184275457 + AluSq SINE Alu 64 316 0 1768 190 16 25 chr5 18810531 18810742 -184274790 - MLT1A1 LTR MaLR 0 365 157 2139 110 3 0 chr5 18810742 18811042 -184274490 - AluSq SINE Alu -12 301 1 1768 190 16 25 chr5 18811042 18811198 -184274334 - MLT1A1 LTR MaLR -208 157 1 1953 131 10 0 chr5 18811806 18812097 -184273435 + AluSq SINE Alu 1 294 -19 384 77 0 0 chr5 18812568 18812620 -184272912 + (TA)n Simple_repeat Simple_repeat 2 53 0 1858 117 43 0 chr5 18812620 18812901 -184272631 - AluSg SINE Alu -17 293 1 246 148 37 19 chr5 18812902 18812956 -184272576 - Alu SINE Alu 0 308 254 949 246 86 0 chr5 18813024 18813256 -184272276 + MIR SINE MIR 8 259 -3 819 198 113 35 chr5 18813367 18813624 -184271908 - LTR19C LTR ERV1 -13 766 490 * 1464 199 24 95 chr5 18813606 18813738 -184271794 - LTR9 LTR ERV1 -221 391 251 2028 95 3 3 chr5 18813738 18814034 -184271498 - AluSx SINE Alu -16 296 1 1464 199 24 95 chr5 18814034 18814253 -184271279 - LTR9 LTR ERV1 -361 251 72 1941 96 10 14 chr5 18814253 18814546 -184270986 + AluSx SINE Alu 1 292 -20 1464 199 24 95 chr5 18814546 18814614 -184270918 - LTR9 LTR ERV1 -540 72 1 425 276 5 95 chr5 18814846 18815056 -184270476 + L1ME3A LINE L1 5704 5894 -276 1981 118 14 0 chr5 18815151 18815439 -184270093 + AluSx SINE Alu 3 294 -18 524 268 196 30 chr5 18815620 18815665 -184269867 - L1ME4a LINE L1 -11 6110 6074 2070 96 7 16 chr5 18815665 18815968 -184269564 - AluY SINE Alu -3 308 9 3525 62 0 17 chr5 18815976 18816440 -184269092 - L1PA7 LINE L1 -1 6153 5698 2118 115 0 31 chr5 18816448 18816771 -184268761 + AluSq SINE Alu 1 313 0 524 268 196 30 chr5 18816771 18817110 -184268422 - L1ME4a LINE L1 -57 6064 5641 192 125 47 0 chr5 18817133 18817197 -184268335 + (TA)n Simple_repeat Simple_repeat 2 68 0 413 214 14 93 chr5 18817198 18817338 -184268194 - L1ME LINE L1 -446 5675 5547 412 280 28 156 chr5 18818178 18818639 -184266893 + L2 LINE L2 2871 3272 0 26 0 0 0 chr5 18818710 18818736 -184266796 + AT_rich Low_complexity Low_complexity 1 26 0 2287 79 3 0 chr5 18818790 18819081 -184266451 - AluSg1 SINE Alu -17 292 1 190 156 250 0 chr5 18819103 18819167 -184266365 + MIR SINE MIR 72 151 -111 189 296 0 0 chr5 18820739 18820783 -184264749 + L2 LINE L2 3191 3234 -79 2308 86 3 6 chr5 18820919 18821233 -184264299 - AluSp SINE Alu 0 313 1 2907 132 5 2 chr5 18823641 18824067 -184261465 + MSTA LTR MaLR 2 428 0 2126 93 0 4 chr5 18824099 18824378 -184261154 + AluSq SINE Alu 19 296 -17 198 0 0 0 chr5 18824841 18824863 -184260669 + (TA)n Simple_repeat Simple_repeat 2 23 0 2000 119 7 0 chr5 18824879 18825173 -184260359 - AluSg SINE Alu -14 296 1 263 189 38 0 chr5 18825806 18825859 -184259673 + Tigger5 DNA MER2_type 1 55 -2268 293 165 0 165 chr5 18825869 18825972 -184259560 + Tigger5 DNA MER2_type 2237 2322 -1 366 183 0 0 chr5 18825987 18826058 -184259474 + (TG)n Simple_repeat Simple_repeat 2 72 0 1097 228 57 15 chr5 18826071 18826334 -184259198 - MLT2D LTR ERVL -50 364 91 577 185 20 80 chr5 18826406 18826557 -184258975 - MER103 DNA DNA -22 144 3 1984 76 0 0 chr5 18827052 18827302 -184258230 - AluY SINE Alu -12 299 50 597 75 0 12 chr5 18827468 18827548 -184257984 - MADE1 DNA Mariner -1 79 1 1986 147 39 52 chr5 18827996 18828039 -184257493 - MER57A LTR ERV1 0 403 361 1874 121 4 4 chr5 18828039 18828319 -184257213 + AluJb SINE Alu 1 280 -32 180 0 0 0 chr5 18828320 18828340 -184257192 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1986 147 39 52 chr5 18828340 18828702 -184256830 - MER57A LTR ERV1 -41 362 1 1984 115 11 0 chr5 18829735 18830022 -184255510 - AluSx SINE Alu -22 290 1 554 267 16 37 chr5 18830483 18830674 -184254858 + LTR33 LTR ERVL 1 187 -334 198 0 0 0 chr5 18830682 18830704 -184254828 + (T)n Simple_repeat Simple_repeat 1 22 0 1922 85 4 0 chr5 18830794 18831053 -184254479 - AluSp SINE Alu -53 260 1 4148 117 13 13 chr5 18831108 18831741 -184253791 + MER51A LTR ERV1 1 633 -1 680 286 65 13 chr5 18832256 18832487 -184253045 - MIR SINE MIR 0 262 20 653 273 157 0 chr5 18833240 18833456 -184252076 + MIR SINE MIR 13 262 0 194 254 0 84 chr5 18833477 18833503 -184252029 - MIR SINE MIR -86 122 95 2207 158 30 25 chr5 18833503 18833865 -184251667 + THE1B LTR MaLR 1 364 0 194 254 0 84 chr5 18833865 18833909 -184251623 - MIR SINE MIR -113 95 58 236 299 11 58 chr5 18834225 18834312 -184251220 + L2 LINE L2 3230 3312 -1 234 357 49 21 chr5 18834714 18834857 -184250675 - L2 LINE L2 -671 2643 2497 180 77 0 0 chr5 18835151 18835177 -184250355 + (TC)n Simple_repeat Simple_repeat 1 26 0 1094 33 22 44 chr5 18836126 18836309 -184249223 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 862 219 0 0 chr5 18836331 18836477 -184249055 - FRAM SINE Alu -30 146 1 737 236 64 55 chr5 18836593 18836909 -184248623 + MER39 LTR ERV1 1 533 -174 1348 136 84 1 chr5 18836932 18837337 -184248195 - LTR54 LTR ERV1 -5 505 10 700 189 8 0 chr5 18837357 18837489 -184248043 + MER39 LTR ERV1 553 685 -22 3637 149 18 43 chr5 18837565 18837905 -184247627 + MER39B LTR ERV1 1 317 -336 2038 143 10 0 chr5 18837905 18838212 -184247320 + AluSx SINE Alu 1 310 -2 3637 149 18 43 chr5 18838212 18838537 -184246995 + MER39B LTR ERV1 317 649 -4 2274 90 7 0 chr5 18838621 18838920 -184246612 + AluSx SINE Alu 12 312 0 2099 137 0 0 chr5 18840025 18840317 -184245215 - AluSx SINE Alu -8 304 13 302 365 34 17 chr5 18840573 18840751 -184244781 - L1MC4a LINE L1 -1836 5972 5792 1219 176 70 19 chr5 18840931 18841244 -184244288 + L1MC4a LINE L1 6163 6491 -1317 1500 183 3 24 chr5 18841335 18841759 -184243773 - AluJo SINE Alu 0 418 1 288 280 43 11 chr5 18843230 18843323 -184242209 - MIR3 SINE MIR -3 205 110 2020 110 0 18 chr5 18843382 18843663 -184241869 - AluSx SINE Alu -36 276 1 1977 141 0 3 chr5 18844668 18844959 -184240573 - AluSx SINE Alu -18 294 5 2149 90 38 3 chr5 18845100 18845389 -184240143 + AluSc SINE Alu 1 299 -10 1743 163 3 29 chr5 18845419 18845725 -184239807 + AluJo SINE Alu 1 298 -14 207 0 0 0 chr5 18845932 18845955 -184239577 + (TA)n Simple_repeat Simple_repeat 2 24 0 2488 161 91 106 chr5 18845957 18846913 -184238619 + MER21A LTR ERV1 26 924 -7 2306 92 0 3 chr5 18847047 18847340 -184238192 - AluSx SINE Alu -20 292 1 1693 101 20 2 chr5 18847589 18847903 -184237629 + MER51B LTR ERV1 1 377 0 234 326 93 88 chr5 18847905 18847964 -184237568 + MIR SINE MIR 69 126 -136 2237 118 0 13 chr5 18847964 18848278 -184237254 - AluSx SINE Alu 0 312 3 234 326 93 88 chr5 18848278 18848411 -184237121 + MIR SINE MIR 126 262 0 2415 48 3 29 chr5 18848533 18848844 -184236688 + AluY SINE Alu 1 303 -8 2424 97 0 0 chr5 18848874 18849182 -184236350 - AluSq SINE Alu -5 308 1 1504 172 24 31 chr5 18849263 18849553 -184235979 + AluJo SINE Alu 5 292 -20 2309 107 0 0 chr5 18849612 18849912 -184235620 - AluSg1 SINE Alu -9 300 1 300 300 0 0 chr5 18849999 18850079 -184235453 - L1MC/D LINE L1 -2024 5784 5705 2924 186 36 42 chr5 18850180 18850819 -184234713 + L1MB5 LINE L1 5527 6161 -13 1641 141 116 0 chr5 18851486 18851763 -184233769 + AluJb SINE Alu 1 309 -3 3784 185 24 10 chr5 18851944 18852659 -184232873 - L1MB5 LINE L1 -8 6166 5442 4251 209 44 59 chr5 18852667 18853980 -184231552 - L1MB5 LINE L1 -755 5391 4099 252 246 33 0 chr5 18853979 18854040 -184231492 + L1MB5 LINE L1 4068 4130 -2016 * 2267 120 0 0 chr5 18854930 18855231 -184230301 + AluSx SINE Alu 1 301 -11 618 219 39 16 chr5 18855419 18855547 -184229985 + MER94 DNA DNA 4 134 0 2210 96 7 0 chr5 18855572 18855865 -184229667 - AluSq SINE Alu -16 297 3 213 289 122 33 chr5 18856841 18857028 -184228504 + MIR SINE MIR 41 241 -21 2353 88 3 0 chr5 18857226 18857522 -184228010 - AluSq SINE Alu -16 297 1 262 301 43 11 chr5 18857894 18857987 -184227545 - MLT1L LTR MaLR -366 249 154 2045 100 82 0 chr5 18858865 18859145 -184226387 + AluSx SINE Alu 1 303 -9 29 0 0 0 chr5 18859670 18859699 -184225833 + AT_rich Low_complexity Low_complexity 1 29 0 2552 63 0 0 chr5 18859936 18860236 -184225296 - AluY SINE Alu -11 300 1 2300 99 7 3 chr5 18860796 18861099 -184224433 - AluSx SINE Alu -8 304 1 23 0 0 0 chr5 18861240 18861263 -184224269 + AT_rich Low_complexity Low_complexity 1 23 0 304 272 19 58 chr5 18863244 18863347 -184222185 + L2 LINE L2 3191 3289 -24 229 386 35 7 chr5 18864052 18864197 -184221335 - MIR3 SINE MIR -2 206 58 2894 239 72 27 chr5 18864884 18865812 -184219720 - L1ME3A LINE L1 -5 6234 5265 369 109 0 0 chr5 18865813 18865868 -184219664 + (TCCCC)n Simple_repeat Simple_repeat 4 58 0 1840 172 7 0 chr5 18865895 18866198 -184219334 - AluJb SINE Alu -7 305 1 773 271 75 47 chr5 18866198 18866692 -184218840 - L1ME3A LINE L1 -948 5267 4760 658 256 80 67 chr5 18866893 18867206 -184218326 - L1ME3A LINE L1 -1980 4235 3919 914 173 0 84 chr5 18867223 18867425 -184218107 - MLT1A1 LTR MaLR -46 319 135 316 288 16 40 chr5 18867433 18867558 -184217974 - L1ME3A LINE L1 -2301 3914 3793 2579 189 53 4 chr5 18867558 18868070 -184217462 - MER90 LTR ERV1 0 614 78 2092 142 9 15 chr5 18868062 18868387 -184217145 + MER1B DNA MER1_type 17 339 0 * 1130 169 25 158 chr5 18868430 18868792 -184216740 + MER31B LTR ERV1 1 314 -152 318 286 139 61 chr5 18868795 18869089 -184216443 - L1ME3A LINE L1 -4205 2191 1875 2234 123 3 0 chr5 18869547 18869849 -184215683 - AluSx SINE Alu -9 303 1 1745 158 133 36 chr5 18871651 18872011 -184213521 - MLT2C1 LTR ERVL -1 396 2 32 0 0 0 chr5 18872526 18872558 -184212974 + AT_rich Low_complexity Low_complexity 1 32 0 1664 168 4 18 chr5 18872565 18872845 -184212687 - AluJo SINE Alu -36 276 1 2616 146 54 5 chr5 18873982 18874387 -184211145 - MSTB LTR MaLR -1 425 1 2220 125 3 0 chr5 18874602 18874907 -184210625 - AluSg SINE Alu -4 306 1 358 215 23 17 chr5 18875079 18875256 -184210276 + (CCTAT)n Simple_repeat Simple_repeat 3 180 0 252 0 0 0 chr5 18875518 18875546 -184209986 + (TG)n Simple_repeat Simple_repeat 2 29 0 993 169 47 0 chr5 18879211 18879383 -184206149 - MER5A DNA MER1_type -7 182 3 364 326 160 15 chr5 18879472 18880009 -184205523 + L2 LINE L2 1895 2509 -805 2179 89 7 20 chr5 18880167 18880471 -184205061 - AluY SINE Alu -11 300 1 1790 155 3 26 chr5 18880585 18880894 -184204638 - AluJo SINE Alu -10 302 1 218 222 32 16 chr5 18880922 18880985 -184204547 - MIR SINE MIR -95 167 104 656 207 76 0 chr5 18881294 18881439 -184204093 - L1MD2 LINE L1 -10 6349 6194 1320 185 63 15 chr5 18881445 18881715 -184203817 - L1MD2 LINE L1 -218 6141 5859 277 123 35 18 chr5 18881714 18881771 -184203761 - L1MDa LINE L1 -3918 2622 2565 * 6064 210 76 36 chr5 18881767 18881794 -184203738 - L1MDa LINE L1 -4781 1759 1735 2104 119 0 13 chr5 18881794 18881812 -184203720 - AluSx SINE Alu -6 306 289 210 71 0 0 chr5 18881812 18881840 -184203692 + (TATG)n Simple_repeat Simple_repeat 2 29 0 2104 119 0 13 chr5 18881840 18882131 -184203401 - AluSx SINE Alu -23 289 1 6064 210 76 36 chr5 18882131 18882433 -184203099 - L1MDa LINE L1 -4805 1735 1447 1462 122 0 0 chr5 18882433 18882629 -184202903 - AluSx SINE Alu -116 196 1 6064 210 76 36 chr5 18882629 18883661 -184201871 - L1MDa LINE L1 -5093 1447 318 2315 109 0 6 chr5 18883661 18883974 -184201558 - AluSx SINE Alu -1 311 1 6064 210 76 36 chr5 18883974 18884232 -184201300 - L1MDa LINE L1 -6222 318 72 257 292 14 0 chr5 18884602 18884674 -184200858 + L2 LINE L2 2588 2660 -654 182 373 71 28 chr5 18884803 18885015 -184200517 + L2 LINE L2 2829 3049 -223 645 283 150 4 chr5 18885136 18885362 -184200170 + MIR SINE MIR 3 261 -1 1219 206 42 8 chr5 18885964 18886225 -184199307 - MLT1A1 LTR MaLR -2 363 94 1613 135 69 99 chr5 18886225 18886506 -184199026 + MER47A DNA MER2_type 1 270 -2053 1853 150 0 7 chr5 18886506 18886780 -184198752 - AluSx SINE Alu -21 291 20 1613 135 69 99 chr5 18886780 18886862 -184198670 + MER47A DNA MER2_type 270 353 -13 445 141 54 43 chr5 18886872 18886964 -184198568 - MLT1A1 LTR MaLR -279 95 3 901 183 7 0 chr5 18887006 18887159 -184198373 - L1PB4 LINE L1 -5 6151 5998 1591 128 143 0 chr5 18887553 18887804 -184197728 - AluSx SINE Alu -24 288 2 236 116 47 0 chr5 18888047 18888090 -184197442 + L2 LINE L2 2935 2979 -334 217 254 60 15 chr5 18888087 18888154 -184197378 - L2 LINE L2 -370 2944 2875 * 1919 157 6 10 chr5 18888392 18888705 -184196827 + AluJo SINE Alu 1 312 0 798 221 60 45 chr5 18888955 18889255 -184196277 + MLT1J2 LTR MaLR 64 367 -42 489 283 177 0 chr5 18889342 18889540 -184195992 + MIR SINE MIR 7 239 -23 439 213 66 37 chr5 18889820 18889956 -184195576 + MLT1G LTR MaLR 56 195 -372 1686 187 7 14 chr5 18889991 18890275 -184195257 - AluJo SINE Alu -30 282 1 833 248 0 0 chr5 18890283 18890440 -184195092 - FRAM SINE Alu -18 158 2 588 264 203 5 chr5 18890494 18890706 -184194826 + MLT1G LTR MaLR 251 504 -86 1590 247 84 40 chr5 18890706 18891229 -184194303 + L1ME3A LINE L1 5391 5936 -234 674 259 32 48 chr5 18891335 18891586 -184193946 + L1ME3A LINE L1 5924 6170 0 366 263 21 0 chr5 18891653 18891748 -184193784 + MLT1G LTR MaLR 499 595 0 277 324 45 36 chr5 18891860 18891971 -184193561 + L2 LINE L2 3155 3266 -6 2401 92 3 0 chr5 18892366 18892669 -184192863 - AluSx SINE Alu -8 304 1 431 319 64 43 chr5 18892840 18893028 -184192504 + MIR3 SINE MIR 14 205 -3 1929 146 14 3 chr5 18893088 18893382 -184192150 - AluSq SINE Alu -16 297 1 2471 154 73 0 chr5 18895314 18895710 -184189822 - MSTB LTR MaLR 0 426 2 289 265 12 12 chr5 18895782 18895865 -184189667 + MIR SINE MIR 172 254 -8 586 260 47 58 chr5 18895957 18896215 -184189317 - MLT1H LTR MaLR 0 549 295 465 244 148 0 chr5 18896277 18896412 -184189120 - MLT1H LTR MaLR -394 155 1 1213 254 81 73 chr5 18896819 18897323 -184188209 + MLT1K LTR MaLR 67 574 -14 298 311 175 39 chr5 18898164 18898473 -184187059 + L2 LINE L2 2921 3271 -1 2232 124 16 59 chr5 18898599 18898952 -184186580 - MER4D LTR ERV1 0 872 536 1685 112 16 8 chr5 18898952 18899210 -184186322 + AluSq SINE Alu 54 313 0 2232 124 16 59 chr5 18899210 18899244 -184186288 - MER4D LTR ERV1 -336 536 502 2124 88 56 7 chr5 18899243 18899549 -184185983 - MER4D LTR ERV1 -551 321 1 * 5072 135 58 15 chr5 18899801 18900659 -184184873 + MER4D LTR ERV1 1 895 -8 583 110 9 46 chr5 18901554 18901663 -184183869 + L1MA4 LINE L1 6196 6300 0 1111 224 56 14 chr5 18902026 18902312 -184183220 - LTR16C LTR ERVL 0 491 194 3101 227 19 9 chr5 18902516 18903163 -184182369 + MER82 DNA MER2_type 1 653 0 2398 88 3 0 chr5 18903165 18903462 -184182070 - AluSq SINE Alu -13 300 3 1861 98 0 0 chr5 18903990 18904234 -184181298 + AluSq SINE Alu 52 295 -18 1906 128 17 27 chr5 18904397 18904731 -184180801 + AluSx SINE Alu 1 312 0 764 243 23 18 chr5 18905013 18905231 -184180301 - L2 LINE L2 -1 3312 3094 265 313 98 40 chr5 18905428 18905776 -184179756 + LTR16C LTR ERVL 122 489 -2 1623 141 0 104 chr5 18905827 18906174 -184179358 + AluY SINE Alu 1 311 0 291 281 83 8 chr5 18906304 18906425 -184179107 - L2 LINE L2 -428 2886 2757 185 195 24 0 chr5 18906688 18906729 -184178803 - L2 LINE L2 -1 3312 3271 1099 120 29 17 chr5 18906790 18906965 -184178567 - L1MB4 LINE L1 0 6180 6004 1655 196 62 57 chr5 18906978 18907397 -184178135 + MER31B LTR ERV1 1 421 -45 3739 172 32 15 chr5 18907436 18907503 -184178029 - L1MB4 LINE L1 -190 5990 5926 1930 199 37 0 chr5 18907503 18907855 -184177677 - MLT1A1 LTR MaLR 0 365 1 3739 172 32 15 chr5 18907855 18908528 -184177004 - L1MB4 LINE L1 -254 5926 5240 1513 223 105 50 chr5 18908545 18909030 -184176502 + MLT2B1 LTR ERVL 1 512 -8 1693 145 0 0 chr5 18909317 18909559 -184175973 - AluSq SINE Alu -71 242 1 371 186 356 17 chr5 18909776 18909894 -184175638 + MER5A DNA MER1_type 32 189 0 4084 120 62 74 chr5 18909918 18911309 -184174223 - pTR5 LTR ERV1 0 2438 66 334 336 25 17 chr5 18911342 18911461 -184174071 - MIR3 SINE MIR -5 203 84 266 255 112 20 chr5 18911555 18911653 -184173879 - MIR3 SINE MIR -11 197 91 780 281 33 83 chr5 18911670 18911732 -184173800 - MLT1I LTR MaLR -3 406 342 2154 105 3 11 chr5 18911732 18912045 -184173487 - AluSx SINE Alu 0 311 1 780 281 33 83 chr5 18912045 18912340 -184173192 - MLT1I LTR MaLR -67 342 66 569 217 169 63 chr5 18912340 18912529 -184173003 + MER63A DNA MER1_type 1 209 -1 2139 114 20 0 chr5 18912593 18912891 -184172641 + AluSx SINE Alu 3 306 -6 25 0 0 0 chr5 18913471 18913496 -184172036 + AT_rich Low_complexity Low_complexity 1 25 0 1917 169 0 3 chr5 18913496 18913804 -184171728 - AluJo SINE Alu -5 307 1 893 260 31 35 chr5 18914339 18914593 -184170939 - MIR SINE MIR -2 260 8 240 305 61 53 chr5 18914945 18915076 -184170456 - L3 LINE CR1 -251 1326 1195 526 244 15 37 chr5 18916042 18916177 -184169355 - MER94 DNA DNA -2 132 1 468 328 101 4 chr5 18916909 18917147 -184168385 + MIR SINE MIR 2 262 0 1590 90 11 93 chr5 18917376 18917644 -184167888 + L1MA5 LINE L1 6053 6298 -2 283 95 0 0 chr5 18917687 18917729 -184167803 - AluSx SINE Alu -4 297 256 1688 96 0 0 chr5 18917730 18917939 -184167593 - AluSx SINE Alu -93 219 11 264 351 23 15 chr5 18918543 18918674 -184166858 - MIR SINE MIR -128 134 3 272 75 25 0 chr5 18919142 18919182 -184166350 + MADE1 DNA Mariner 40 80 0 371 268 62 39 chr5 18920803 18920982 -184164550 - MIR SINE MIR -14 248 66 568 298 19 29 chr5 18921109 18921317 -184164215 + MIR SINE MIR 2 207 -55 25 83 0 0 chr5 18921346 18921406 -184164126 + AT_rich Low_complexity Low_complexity 1 60 0 2083 135 7 0 chr5 18921993 18922289 -184163243 - AluSx SINE Alu -14 298 1 256 324 18 36 chr5 18922364 18922475 -184163057 + L2 LINE L2 2660 2768 -546 322 316 86 48 chr5 18922510 18922719 -184162813 + L2 LINE L2 2757 2973 -341 786 218 12 18 chr5 18922755 18922925 -184162607 + MER5B DNA MER1_type 7 175 -3 618 344 39 23 chr5 18922925 18923182 -184162350 + L2 LINE L2 3011 3271 -1 222 88 18 35 chr5 18926414 18926471 -184159061 + (TA)n Simple_repeat Simple_repeat 1 56 0 470 300 64 55 chr5 18926477 18926697 -184158835 - MIR SINE MIR -28 234 13 201 74 0 0 chr5 18926842 18926869 -184158663 + (TAA)n Simple_repeat Simple_repeat 3 29 0 1624 194 105 25 chr5 18927522 18927711 -184157821 - MLT1B LTR MaLR 0 390 218 2095 141 0 3 chr5 18927711 18928015 -184157517 - AluSx SINE Alu -9 303 1 1624 194 105 25 chr5 18928015 18928186 -184157346 - MLT1B LTR MaLR -172 218 1 235 313 113 9 chr5 18928549 18928664 -184156868 - L2 LINE L2 -9 3263 3137 2820 158 41 6 chr5 18929056 18929524 -184156008 - MER31A LTR ERV1 0 485 2 2188 99 0 40 chr5 18929571 18929893 -184155639 + AluSc SINE Alu 1 309 0 318 411 8 0 chr5 18929997 18930121 -184155411 - L2 LINE L2 -3 3269 3145 25 31 0 0 chr5 18930860 18930892 -184154640 + AT_rich Low_complexity Low_complexity 1 32 0 734 168 0 9 chr5 18931059 18931172 -184154360 + FLAM_A SINE Alu 6 117 -25 449 268 89 56 chr5 18931313 18931526 -184154006 + MIR SINE MIR 4 223 -39 2312 91 3 10 chr5 18932021 18932330 -184153202 - AluSq SINE Alu -6 307 1 432 329 13 0 chr5 18932554 18932709 -184152823 - MLT1K LTR MaLR -8 580 424 613 143 0 38 chr5 18932919 18933024 -184152508 - MER45C DNA AcHobo 0 953 853 1180 78 0 0 chr5 18933027 18933168 -184152364 + AluSp/q SINE Alu 156 296 -17 1735 254 88 70 chr5 18933168 18933194 -184152338 - MER45C DNA AcHobo -716 865 841 345 47 0 0 chr5 18933194 18933237 -184152295 + (TA)n Simple_repeat Simple_repeat 2 44 0 1735 254 88 70 chr5 18933237 18933518 -184152014 - MER45C DNA AcHobo -740 841 566 2534 128 26 0 chr5 18933518 18933870 -184151662 - THE1B LTR MaLR -3 361 1 1735 254 88 70 chr5 18933870 18934359 -184151173 - MER45C DNA AcHobo -1015 566 54 2144 109 0 34 chr5 18934845 18935165 -184150367 - AluSc SINE Alu 0 309 1 27 0 0 0 chr5 18935519 18935546 -184149986 + AT_rich Low_complexity Low_complexity 1 27 0 927 113 0 0 chr5 18935546 18935670 -184149862 - AluJb SINE Alu -187 125 2 2208 110 3 0 chr5 18936788 18937079 -184148453 + AluSx SINE Alu 1 292 -20 709 235 12 0 chr5 18938206 18938368 -184147164 + MER20 DNA MER1_type 56 219 0 2192 126 0 3 chr5 18939105 18939414 -184146118 + AluSx SINE Alu 1 308 -4 1569 259 92 36 chr5 18939442 18940026 -184145506 - HERVL LTR ERVL -1575 4079 3463 1444 216 276 28 chr5 18940026 18940555 -184144977 - MLT2F LTR ERVL 0 663 4 709 265 25 10 chr5 18940558 18940754 -184144778 - HERVL LTR ERVL -2258 3506 3308 4434 58 0 2 chr5 18940809 18941331 -184144201 - L1PA8 LINE L1 -6 6166 5646 310 350 73 32 chr5 18941435 18941749 -184143783 - L1MEd LINE L1 -5044 1075 749 2983 149 60 9 chr5 18944268 18944798 -184140734 + MER89 LTR ERV1 2 558 -1 2236 114 68 52 chr5 18945093 18945462 -184140070 - THE1C LTR MaLR 0 375 1 228 329 0 0 chr5 18945493 18945566 -184139966 - L2 LINE L2 -15 3298 3226 273 57 0 0 chr5 18945739 18945774 -184139758 + (TG)n Simple_repeat Simple_repeat 2 36 0 231 333 22 11 chr5 18945785 18945875 -184139657 + MIR SINE MIR 84 174 -88 369 294 196 0 chr5 18946349 18946512 -184139020 + L2 LINE L2 2563 2757 -557 23 33 0 0 chr5 18947215 18947245 -184138287 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr5 18947468 18947497 -184138035 + AT_rich Low_complexity Low_complexity 1 29 0 430 327 96 56 chr5 18947531 18948085 -184137447 + L2 LINE L2 2736 3311 -2 325 303 97 7 chr5 18948090 18948245 -184137287 - L1ME4a LINE L1 -176 5945 5777 261 116 0 0 chr5 18948255 18948298 -184137234 - L1M4 LINE L1 -971 5175 5133 300 287 87 20 chr5 18948904 18949054 -184136478 + HAL1b LINE L1 424 583 -765 189 0 0 0 chr5 18949397 18949418 -184136114 + (T)n Simple_repeat Simple_repeat 1 21 0 2310 102 0 0 chr5 18949700 18949994 -184135538 + AluSc SINE Alu 1 294 -15 1500 242 142 11 chr5 18950067 18950616 -184134916 + L2 LINE L2 1591 2211 -1103 490 205 70 16 chr5 18950621 18950752 -184134780 - MLT1C LTR MaLR 0 467 345 1898 150 72 85 chr5 18951090 18951426 -184134106 - MSTD LTR MaLR 0 396 64 790 183 15 0 chr5 18951426 18951557 -184133975 + FLAM_C SINE Alu 1 133 0 1898 150 72 85 chr5 18951557 18951621 -184133911 - MSTD LTR MaLR -332 64 1 302 310 84 35 chr5 18952303 18952445 -184133087 + MIR SINE MIR 12 160 -102 1751 109 4 0 chr5 18952656 18952886 -184132646 - AluSx SINE Alu -81 231 1 2887 171 62 10 chr5 18954633 18955113 -184130419 - MLT1D LTR MaLR 0 505 1 258 358 29 15 chr5 18955276 18955413 -184130119 - ERVL LTR ERVL -499 5265 5127 844 265 81 58 chr5 18955622 18956451 -184129081 - L1MEd LINE L1 -4863 1256 520 400 363 126 27 chr5 18956980 18957465 -184128067 - ERVL LTR ERVL -1148 4616 4084 212 162 0 0 chr5 18957834 18957871 -184127661 + (TATG)n Simple_repeat Simple_repeat 3 39 0 2878 157 32 52 chr5 18957910 18958423 -184127109 - L1MA9 LINE L1 -33 6279 5758 6566 138 84 12 chr5 18958423 18958860 -184126672 - Tigger3b DNA MER2_type -1797 1231 827 2233 116 0 0 chr5 18958860 18959152 -184126380 + AluSg SINE Alu 1 292 -18 6566 138 84 12 chr5 18959152 18959863 -184125669 - Tigger3b DNA MER2_type -2201 827 1 264 30 0 0 chr5 18959863 18959896 -184125636 + (TA)n Simple_repeat Simple_repeat 1 33 0 2878 157 32 52 chr5 18959896 18959998 -184125534 - L1MA9 LINE L1 -552 5760 5675 222 296 91 11 chr5 18961908 18961996 -184123536 - L2 LINE L2 -1 3312 3218 237 65 0 0 chr5 18962064 18962095 -184123437 + (GA)n Simple_repeat Simple_repeat 2 32 0 1131 288 81 22 chr5 18962131 18962740 -184122792 - L2 LINE L2 0 3313 2661 3174 116 30 25 chr5 18963014 18963544 -184121988 + MLT2A2 LTR ERVL 1 520 0 348 313 31 25 chr5 18964130 18964290 -184121242 + L3 LINE CR1 1412 1572 -5 743 243 29 33 chr5 18964579 18964789 -184120743 + MER3 DNA MER1_type 1 209 0 623 163 20 7 chr5 18964969 18965122 -184120410 + (TCTA)n Simple_repeat Simple_repeat 4 158 0 28 48 0 0 chr5 18966724 18966766 -184118766 + AT_rich Low_complexity Low_complexity 1 42 0 14920 204 32 32 chr5 18966766 18971643 -184113889 - L1MA5 LINE L1 -6 7315 2455 6815 130 17 247 chr5 18971624 18974219 -184111313 - L1MA5 LINE L1 -5167 2001 5 * 309 308 15 31 chr5 18974261 18974391 -184111141 - LTR16B LTR ERVL -298 166 39 2506 60 7 0 chr5 18974482 18974783 -184110749 + MLT2A1 LTR ERVL 8 310 -134 45505 65 9 1 chr5 18974783 18980383 -184105149 + HERVL-A1-A1 LTR ERVL 13 5654 0 3736 65 0 9 chr5 18980383 18980831 -184104701 + MLT2A1 LTR ERVL 1 444 0 499 313 71 6 chr5 18980832 18981014 -184104518 - ERVL LTR ERVL -1487 4277 4084 1240 146 58 120 chr5 18982346 18982655 -184102877 - L1MC/D LINE L1 -2008 5777 5488 * 1433 165 189 3 chr5 18982652 18983022 -184102510 + L1MCa LINE L1 1830 2268 -4158 240 250 0 0 chr5 18983229 18983297 -184102235 - L1MC4 LINE L1 -1339 6703 6636 507 197 88 15 chr5 18983321 18983458 -184102074 + HAL1b LINE L1 349 495 -853 227 268 145 22 chr5 18983449 18983587 -184101945 - HAL1b LINE L1 -473 875 721 * 4734 43 9 0 chr5 18983731 18984312 -184101220 - L1P LINE L1 -751 5395 4810 6859 184 10 12 chr5 18984412 18986097 -184099435 + L1P5 LINE L1 3885 5564 -587 1603 232 5 19 chr5 18986284 18986663 -184098869 + MLT1A2 LTR MaLR 1 374 0 770 263 202 11 chr5 18986667 18987058 -184098474 + MLT1C LTR MaLR 1 466 -1 184 280 20 20 chr5 18987305 18987355 -184098177 + L2 LINE L2 3223 3272 0 244 255 0 0 chr5 18987549 18987596 -184097936 + polypurine Low_complexity Low_complexity 4 50 0 511 252 7 28 chr5 18987686 18987829 -184097703 - MLT1D LTR MaLR -365 140 1 3802 146 140 7 chr5 18988036 18988764 -184096768 + LTR1B LTR ERV1 2 826 0 210 301 55 0 chr5 18988824 18988897 -184096635 + MIR SINE MIR 71 147 -115 639 272 72 38 chr5 18989283 18989518 -184096014 - MIR SINE MIR -16 246 4 365 149 149 37 chr5 18991517 18991624 -184093908 - L1MB7 LINE L1 -19 6165 6047 22 0 0 0 chr5 18992466 18992488 -184093044 + AT_rich Low_complexity Low_complexity 1 22 0 288 303 53 53 chr5 18992518 18992670 -184092862 + MIR SINE MIR 79 230 -32 1595 152 114 20 chr5 18993644 18993986 -184091546 + THE1C LTR MaLR 2 375 0 288 179 51 51 chr5 18994161 18994239 -184091293 + MLT1L LTR MaLR 231 390 -203 1651 192 36 9 chr5 18996631 18996964 -184088568 - L1PA16 LINE L1 -22 6144 5803 612 363 49 14 chr5 18997193 18997559 -184087973 - LTR16C LTR ERVL 0 491 113 242 210 0 60 chr5 18998151 18998318 -184087214 + (TA)n Simple_repeat Simple_repeat 2 158 0 2227 147 0 16 chr5 18998361 18998735 -184086797 + L1PB1 LINE L1 5776 6143 -8 24 32 0 0 chr5 18998741 18998772 -184086760 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr5 19000433 19000458 -184085074 + AT_rich Low_complexity Low_complexity 1 25 0 356 390 52 0 chr5 19001317 19001662 -184083870 - ERVL LTR ERVL -3700 2064 1656 1162 119 0 0 chr5 19002340 19002528 -184083004 - AluSg/x SINE Alu 0 321 134 1770 96 118 11 chr5 19002528 19002799 -184082733 - AluSg1 SINE Alu -9 300 1 2300 112 48 31 chr5 19003640 19003998 -184081534 + THE1B LTR MaLR 1 364 0 258 62 0 0 chr5 19003998 19004030 -184081502 + THE1B-int LTR MaLR 1 32 -1548 * 3421 111 62 0 chr5 19004028 19004525 -184081007 + THE1B-int LTR MaLR 1053 1580 0 2094 133 48 25 chr5 19004527 19004881 -184080651 + THE1B LTR MaLR 3 364 0 2266 113 0 0 chr5 19005589 19005890 -184079642 - AluSx SINE Alu -11 301 1 303 291 43 10 chr5 19005918 19006037 -184079495 + MIR3 SINE MIR 78 202 -6 184 70 47 47 chr5 19006514 19006557 -184078975 + T-rich Low_complexity Low_complexity 2 44 0 717 185 143 37 chr5 19006587 19006776 -184078756 + MER3 DNA MER1_type 1 209 0 805 216 38 56 chr5 19006955 19007168 -184078364 + MER58A DNA MER1_type 1 209 -15 2128 104 22 32 chr5 19007561 19007877 -184077655 - AluSq SINE Alu 0 313 1 304 281 107 8 chr5 19008384 19008505 -184077027 + MLT1H1 LTR MaLR 422 554 -1 2311 105 0 3 chr5 19008766 19009072 -184076460 + AluSx SINE Alu 1 305 -7 3014 127 82 24 chr5 19009151 19009649 -184075883 + MER1A DNA MER1_type 1 527 0 353 361 5 25 chr5 19009714 19009916 -184075616 - L2 LINE L2 -3 3310 3113 282 341 157 18 chr5 19009935 19010152 -184075380 - L2 LINE L2 -885 2429 2183 941 235 110 25 chr5 19010452 19010558 -184074974 + L1M4 LINE L1 2728 2824 -3322 2286 108 0 9 chr5 19010558 19010873 -184074659 + AluSq SINE Alu 1 312 -1 941 235 110 25 chr5 19010873 19011276 -184074256 + L1M4 LINE L1 2824 3280 -2866 1179 133 5 0 chr5 19011470 19011666 -184073866 - L1MA2 LINE L1 0 6304 6108 778 69 0 0 chr5 19011723 19011824 -184073708 - L1P1 LINE L1 -414 5741 5641 * 2528 74 17 14 chr5 19011744 19012096 -184073436 + L1PA2 LINE L1 5657 6009 -146 853 51 8 17 chr5 19012280 19012397 -184073135 - L1PA8 LINE L1 0 6172 6057 180 0 0 0 chr5 19012397 19012417 -184073115 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1685 101 0 0 chr5 19012472 19012709 -184072823 - L1PA8 LINE L1 -11 6161 5925 2150 130 0 0 chr5 19015407 19015715 -184069817 - AluSx SINE Alu -2 310 3 194 300 56 56 chr5 19015887 19015977 -184069555 - L3b LINE CR1 -94 1489 1400 2193 121 0 0 chr5 19016312 19016609 -184068923 - AluSx SINE Alu -13 299 3 188 253 147 27 chr5 19016905 19016980 -184068552 - MIR SINE MIR -69 139 56 233 312 11 21 chr5 19017903 19017996 -184067536 - MIR SINE MIR -81 127 36 339 328 90 25 chr5 19018327 19018528 -184067004 + MIR SINE MIR 20 233 -29 237 65 0 0 chr5 19019438 19019469 -184066063 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 3495 219 55 32 chr5 19020020 19020118 -184065414 - L1MD1 LINE L1 -3 6633 6539 1291 261 19 11 chr5 19020118 19020489 -184065043 - MLT1A2 LTR MaLR 0 374 1 3495 219 55 32 chr5 19020489 19022291 -184063241 - L1MD1 LINE L1 -97 6539 4654 1750 164 31 65 chr5 19022290 19022627 -184062905 - L1MD1 LINE L1 -4582 1958 1638 * 997 69 0 0 chr5 19022627 19022758 -184062774 - L1PB1 LINE L1 -1 6150 6020 1750 164 31 65 chr5 19022758 19022866 -184062666 - L1MD1 LINE L1 -4902 1638 1528 1682 194 66 17 chr5 19022868 19023232 -184062300 - MLT2D LTR ERVL -40 480 1 3841 243 56 21 chr5 19023232 19024513 -184061019 - L1MD1 LINE L1 -5038 1502 19 35 24 0 0 chr5 19025085 19025127 -184060405 + AT_rich Low_complexity Low_complexity 1 42 0 32 0 0 0 chr5 19025156 19025188 -184060344 + AT_rich Low_complexity Low_complexity 1 32 0 278 249 27 141 chr5 19025312 19025497 -184060035 - MIR SINE MIR -79 183 20 4264 276 98 56 chr5 19025763 19027579 -184057953 + L1MEc LINE L1 82 1821 -4394 2256 96 13 10 chr5 19027579 19027881 -184057651 + AluSc SINE Alu 1 303 -6 4264 276 98 56 chr5 19027881 19028938 -184056594 + L1MEc LINE L1 1821 2833 -3382 2235 153 11 0 chr5 19028938 19029298 -184056234 + MER47A DNA MER2_type 1 364 -2 4264 276 98 56 chr5 19029298 19029972 -184055560 + L1MEc LINE L1 2833 3478 -2737 386 20 0 0 chr5 19029972 19030023 -184055509 + L1PA2 LINE L1 6103 6153 -2 4264 276 98 56 chr5 19030023 19031182 -184054350 + L1MEc LINE L1 3478 4919 -1296 679 200 0 13 chr5 19031277 19031432 -184054100 + L1MB8 LINE L1 6025 6177 -1 1359 273 99 13 chr5 19031447 19031913 -184053619 + L1MEc LINE L1 233 738 -5658 2946 207 39 12 chr5 19031933 19032681 -184052851 - L1M4 LINE L1 -981 5165 4398 26018 31 0 0 chr5 19032683 19036604 -184048928 - L1PA3 LINE L1 -3 6152 2233 14834 56 3 4 chr5 19036600 19038553 -184046979 - L1PA3 LINE L1 -4187 1959 9 868 193 0 0 chr5 19038562 19038759 -184046773 - L1M4 LINE L1 -1717 4429 4233 * 1244 224 36 11 chr5 19038754 19039245 -184046287 + L1ME1 LINE L1 5088 5594 -572 461 247 16 35 chr5 19039249 19039874 -184045658 + (TATATG)n Simple_repeat Simple_repeat 1 612 0 468 245 0 33 chr5 19039893 19040077 -184045455 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 310 268 0 62 chr5 19040101 19040198 -184045334 + L1MC4 LINE L1 6615 6705 -1337 306 337 0 0 chr5 19040141 19040230 -184045302 - L1MC4 LINE L1 -1340 6702 6614 * 212 220 20 0 chr5 19040231 19040281 -184045251 + (TA)n Simple_repeat Simple_repeat 1 51 0 1524 227 79 47 chr5 19040281 19040496 -184045036 + L1ME1 LINE L1 5613 5820 -346 476 32 16 0 chr5 19040496 19040558 -184044974 + (CA)n Simple_repeat Simple_repeat 2 64 0 1524 227 79 47 chr5 19040558 19040874 -184044658 + L1ME1 LINE L1 5820 6161 -5 2968 225 54 53 chr5 19041523 19042754 -184042778 + L1ME1 LINE L1 4021 5253 -913 3684 142 18 5 chr5 19042754 19043379 -184042153 + L1PB4 LINE L1 5510 6142 -14 2968 225 54 53 chr5 19043379 19044290 -184041242 + L1ME1 LINE L1 5253 6161 -5 565 207 49 0 chr5 19044300 19044464 -184041068 + L1 LINE L1 2269 2440 -3706 45 75 0 0 chr5 19044839 19044933 -184040599 + AT_rich Low_complexity Low_complexity 1 94 0 1616 154 49 10 chr5 19046347 19046653 -184038879 - MER46B DNA MER2_type 0 236 44 210 37 0 0 chr5 19047020 19047047 -184038485 + (TG)n Simple_repeat Simple_repeat 2 28 0 1335 256 62 41 chr5 19048066 19048205 -184037327 + MER74B LTR ERVL 58 193 -429 2325 95 0 0 chr5 19048205 19048500 -184037032 + AluSc SINE Alu 1 295 -14 1335 256 62 41 chr5 19048500 19048848 -184036684 + MER74B LTR ERVL 193 555 -67 1844 214 36 42 chr5 19048947 19049077 -184036455 + MLT1D LTR MaLR 1 130 -375 1823 146 93 74 chr5 19049077 19049425 -184036107 + MSTB LTR MaLR 1 360 -66 2096 142 0 0 chr5 19049425 19049721 -184035811 + AluSq SINE Alu 1 296 -17 1823 146 93 74 chr5 19049721 19049790 -184035742 + MSTB LTR MaLR 360 426 0 1844 214 36 42 chr5 19049790 19050154 -184035378 + MLT1D LTR MaLR 130 492 -13 389 268 32 24 chr5 19051745 19051868 -184033664 + MIR3 SINE MIR 67 190 -18 2154 176 5 17 chr5 19053384 19053741 -184031791 - L1PB4 LINE L1 -7 6149 5796 225 0 0 0 chr5 19053741 19053766 -184031766 + (TG)n Simple_repeat Simple_repeat 2 26 0 2154 176 5 17 chr5 19053766 19053818 -184031714 - L1PB4 LINE L1 -360 5796 5745 3148 191 13 7 chr5 19053819 19054531 -184031001 + L1 LINE L1 4328 5043 -1103 633 199 0 0 chr5 19054608 19054739 -184030793 + (CA)n Simple_repeat Simple_repeat 2 132 0 2335 185 41 11 chr5 19054740 19055199 -184030333 - MLT2B2 LTR ERVL -40 475 3 729 134 17 0 chr5 19055668 19055787 -184029745 + MLT1E LTR MaLR 40 160 -433 2415 226 68 15 chr5 19055928 19056443 -184029089 + L1M4 LINE L1 4682 5243 -903 1784 172 33 7 chr5 19056443 19056745 -184028787 + AluJo SINE Alu 1 310 -2 2415 226 68 15 chr5 19056745 19056907 -184028625 + L1M4 LINE L1 5243 5395 -751 10688 204 38 10 chr5 19056916 19062243 -184023289 + L1M2 LINE L1 4 5525 -803 2016 172 36 33 chr5 19062243 19062793 -184022739 - MLT2A2 LTR ERVL 0 554 1 657 123 0 0 chr5 19062793 19062899 -184022633 + L1M2 LINE L1 5521 5626 -856 * 10347 162 20 7 chr5 19062894 19063706 -184021826 + L1MA1 LINE L1 3122 3922 -2380 2833 92 0 12 chr5 19063706 19064109 -184021423 + L1PA10 LINE L1 5771 6168 0 10347 162 20 7 chr5 19064109 19066353 -184019179 + L1MA1 LINE L1 3922 6220 -82 2657 151 22 0 chr5 19066353 19066808 -184018724 + L1PA16 LINE L1 5685 6157 -9 26 64 0 0 chr5 19066808 19066855 -184018677 + AT_rich Low_complexity Low_complexity 1 47 0 2102 134 0 6 chr5 19067292 19067606 -184017926 - AluSx SINE Alu 0 312 1 492 296 26 16 chr5 19068042 19068231 -184017301 + LTR16C LTR ERVL 301 491 0 477 280 0 0 chr5 19068610 19068710 -184016822 - L2 LINE L2 -15 3298 3199 23 0 0 0 chr5 19068727 19068750 -184016782 + AT_rich Low_complexity Low_complexity 1 23 0 2486 65 0 3 chr5 19068852 19069161 -184016371 - AluY SINE Alu -3 308 1 2266 81 3 0 chr5 19071642 19071948 -184013584 + AluSp SINE Alu 1 307 0 1263 238 59 0 chr5 19073181 19073501 -184012031 + MER58B DNA MER1_type 1 339 -2 2293 169 24 10 chr5 19073825 19074240 -184011292 + MSTB LTR MaLR 1 421 -5 568 314 207 5 chr5 19074246 19074632 -184010900 + L2 LINE L2 2199 2662 -652 2251 185 114 67 chr5 19075796 19076585 -184008947 + LTR1B LTR ERV1 1 826 0 366 264 32 0 chr5 19077581 19077706 -184007826 + GA-rich Low_complexity Low_complexity 1 129 0 310 270 133 60 chr5 19077709 19077942 -184007590 + L1MCa LINE L1 2229 2478 -3948 323 186 76 25 chr5 19078137 19078255 -184007277 - Charlie1 DNA MER1_type 0 2761 2638 * 1508 209 103 2 chr5 19078254 19078653 -184006879 - Charlie1 DNA MER1_type -1746 1015 576 836 233 30 34 chr5 19078653 19078979 -184006553 - MER92B LTR ERV1 -2 634 94 254 188 16 16 chr5 19078983 19079047 -184006485 + MER58B DNA MER1_type 278 341 0 339 271 17 25 chr5 19079774 19079892 -184005640 - L2 LINE L2 -5 3308 3192 22 0 0 0 chr5 19080024 19080046 -184005486 + AT_rich Low_complexity Low_complexity 1 22 0 2139 151 64 25 chr5 19080631 19081035 -184004497 - MSTA LTR MaLR -4 424 5 1405 152 12 4 chr5 19081581 19081838 -184003694 - L1M2 LINE L1 -718 5573 5315 923 145 6 0 chr5 19081841 19082013 -184003519 + CT-rich Low_complexity Low_complexity 4 176 0 707 218 64 5 chr5 19082252 19082488 -184003044 + L1MEc LINE L1 2055 2269 -4157 285 259 19 19 chr5 19082500 19082608 -184002924 + (TA)n Simple_repeat Simple_repeat 1 108 0 189 281 0 85 chr5 19082619 19082670 -184002862 - MIR SINE MIR -147 115 72 2571 108 3 13 chr5 19082670 19083049 -184002483 - THE1C LTR MaLR 0 375 1 189 281 0 85 chr5 19083049 19083079 -184002453 - MIR SINE MIR -190 72 41 2042 146 66 32 chr5 19084231 19084747 -184000785 - MLT2A2 LTR ERVL 0 554 1 1815 166 26 55 chr5 19084892 19085277 -184000255 - MLT1B LTR MaLR -16 374 1 195 191 71 0 chr5 19085412 19085454 -184000078 - L2 LINE L2 -230 3042 2998 1012 312 44 21 chr5 19085473 19085718 -183999814 - L2 LINE L2 -10 3303 3065 2015 142 95 12 chr5 19085718 19086127 -183999405 - MER65A LTR ERV1 0 445 3 1012 312 44 21 chr5 19086127 19086462 -183999070 - L2 LINE L2 -248 3065 2712 884 180 115 0 chr5 19086469 19086652 -183998880 + MER3 DNA MER1_type 6 209 0 374 299 149 5 chr5 19086660 19086861 -183998671 - L2 LINE L2 -617 2697 2468 324 278 0 21 chr5 19087262 19087359 -183998173 - L1ME LINE L1 -463 5707 5613 1872 199 5 39 chr5 19087361 19087745 -183997787 + MLT2D LTR ERVL 1 372 -42 450 0 0 0 chr5 19087745 19087795 -183997737 + (CA)n Simple_repeat Simple_repeat 2 51 0 1872 199 5 39 chr5 19087795 19087822 -183997710 + MLT2D LTR ERVL 372 398 -16 299 364 19 6 chr5 19087869 19088031 -183997501 - L1ME LINE L1 -641 5525 5362 453 337 105 32 chr5 19088283 19088903 -183996629 - L1ME LINE L1 -1098 5048 4384 237 121 0 0 chr5 19089193 19089226 -183996306 - MLT1I LTR MaLR -8 401 369 296 278 56 16 chr5 19089466 19089592 -183995940 - MLT1J2 LTR MaLR -319 131 1 355 231 152 63 chr5 19089597 19089900 -183995632 - L1ME LINE L1 -2154 3992 3663 328 330 155 10 chr5 19089987 19090187 -183995345 - L1ME LINE L1 -2717 3429 3201 274 343 43 36 chr5 19090428 19090568 -183994964 + MIR3 SINE MIR 55 195 -13 307 252 67 17 chr5 19090595 19090714 -183994818 + MLT1I LTR MaLR 20 144 -265 1379 179 67 22 chr5 19091608 19091920 -183993612 + L1MB8 LINE L1 5853 6178 0 2236 179 20 20 chr5 19092215 19092611 -183992921 + MSTD LTR MaLR 1 396 0 7843 232 29 21 chr5 19092613 19094333 -183991199 + MSTD-int LTR MaLR 2 1735 0 2276 178 18 25 chr5 19094333 19094731 -183990801 + MSTD LTR MaLR 1 395 -1 2232 106 3 3 chr5 19095009 19095310 -183990222 + AluSg SINE Alu 1 301 -9 462 278 80 6 chr5 19096139 19096315 -183989217 + MIR3 SINE MIR 20 208 0 1856 160 65 9 chr5 19097163 19097488 -183988044 - MER61A LTR ERV1 0 343 1 752 248 96 26 chr5 19097584 19097669 -183987863 - MIR SINE MIR -7 255 177 2094 211 54 66 chr5 19097669 19098243 -183987289 + MLT1F1 LTR MaLR 1 567 0 752 248 96 26 chr5 19098243 19098387 -183987145 - MIR SINE MIR -85 177 10 1446 189 3 40 chr5 19099658 19099959 -183985573 + AluJb SINE Alu 3 292 -20 646 221 41 67 chr5 19100681 19100876 -183984656 - MLT1E2 LTR MaLR -377 249 60 267 280 153 25 chr5 19101245 19101363 -183984169 + MIR SINE MIR 129 261 -1 325 358 37 30 chr5 19101423 19101557 -183983975 + L2 LINE L2 3138 3272 0 360 279 23 0 chr5 19101579 19101665 -183983867 - Charlie8 DNA MER1_type -2329 88 1 270 226 71 24 chr5 19103112 19103196 -183982336 + MLT1G LTR MaLR 33 120 -435 470 300 3 6 chr5 19103486 19103644 -183981888 + MLT1G LTR MaLR 109 274 -314 751 333 110 25 chr5 19103667 19104229 -183981303 + L2 LINE L2 2225 2834 -480 248 286 0 0 chr5 19104329 19104413 -183981119 + L1MC4 LINE L1 6619 6702 -1340 489 321 0 21 chr5 19104518 19104658 -183980874 + L2 LINE L2 3136 3272 0 2393 87 7 0 chr5 19105287 19105587 -183979945 - AluSc SINE Alu -7 302 1 277 283 121 42 chr5 19105588 19105754 -183979778 - L2 LINE L2 -987 2327 2149 295 270 111 32 chr5 19106680 19106806 -183978726 - MER5B DNA MER1_type 0 178 43 741 65 0 0 chr5 19107156 19107264 -183978268 + (TC)n Simple_repeat Simple_repeat 2 109 0 1619 179 8 0 chr5 19107264 19107521 -183978011 - AluJb SINE Alu -48 264 6 273 89 0 0 chr5 19108991 19109036 -183976496 + (A)n Simple_repeat Simple_repeat 1 45 0 353 331 0 6 chr5 19109361 19109539 -183975993 + (TA)n Simple_repeat Simple_repeat 2 178 0 2146 89 0 0 chr5 19109625 19109894 -183975638 + AluSg SINE Alu 36 304 -6 2169 118 0 26 chr5 19110313 19110618 -183974914 - AluSx SINE Alu -15 297 1 2622 134 11 30 chr5 19111246 19111687 -183973845 - L1MB3 LINE L1 -7 6176 5744 4834 157 36 33 chr5 19111722 19112438 -183973094 - pTR5 LTR ERV1 -238 2200 1488 203 77 0 26 chr5 19112438 19112477 -183973055 + (CGGG)n Simple_repeat Simple_repeat 3 40 0 4834 157 36 33 chr5 19112477 19112951 -183972581 - pTR5 LTR ERV1 -950 1488 281 268 232 18 0 chr5 19112955 19113011 -183972521 - U6 snRNA snRNA -49 58 2 716 168 6 0 chr5 19113480 19113653 -183971879 + (ATG)n Simple_repeat Simple_repeat 1 174 0 402 253 0 0 chr5 19113661 19113756 -183971776 - MIR SINE MIR -16 246 152 7688 48 0 0 chr5 19113756 19115114 -183970418 - L1PA6 LINE L1 0 6154 4804 17535 49 2 1 chr5 19115114 19117282 -183968250 + L1PA6 LINE L1 2631 4802 -1344 316 286 67 19 chr5 19117282 19117387 -183968145 - MIR SINE MIR -103 159 50 684 294 68 0 chr5 19118627 19118848 -183966684 + MIR SINE MIR 1 236 -26 216 0 0 0 chr5 19119297 19119321 -183966211 + (GA)n Simple_repeat Simple_repeat 1 24 0 461 269 90 6 chr5 19119767 19119934 -183965598 - MIR SINE MIR -53 209 29 433 252 37 55 chr5 19120998 19121412 -183964120 + L1MC4 LINE L1 7411 8042 0 194 244 0 0 chr5 19121651 19121696 -183963836 + MIR SINE MIR 68 112 -150 1986 130 3 3 chr5 19123164 19123449 -183962083 - AluSx SINE Alu -24 288 4 1942 167 3 0 chr5 19124319 19124625 -183960907 - AluJo SINE Alu -5 307 1 1705 139 53 47 chr5 19124916 19125255 -183960277 + MER4A LTR ERV1 1 341 -323 2176 98 17 7 chr5 19125257 19125552 -183959980 + AluSg SINE Alu 1 298 -12 607 163 195 65 chr5 19125570 19125830 -183959702 + MER4C LTR ERV1 157 457 -8 915 146 0 7 chr5 19126616 19126753 -183958779 - U8 snRNA snRNA 0 136 1 649 304 5 27 chr5 19127852 19128076 -183957456 - MIR SINE MIR -4 258 40 22 0 0 0 chr5 19128163 19128185 -183957347 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr5 19129367 19129389 -183956143 + (TG)n Simple_repeat Simple_repeat 1 22 0 372 211 167 26 chr5 19129448 19129562 -183955970 + MER96 DNA MER1_type? 32 161 -14 3556 94 2 13 chr5 19130112 19130570 -183954962 - MLT2A2 LTR ERVL 0 453 1 580 253 36 24 chr5 19130744 19130910 -183954622 + MER5B DNA MER1_type 1 168 -10 298 253 48 0 chr5 19132097 19132180 -183953352 + MIR SINE MIR 176 262 0 358 305 13 20 chr5 19132284 19132435 -183953097 - MIR SINE MIR -24 238 89 207 0 0 0 chr5 19133266 19133289 -183952243 + (TG)n Simple_repeat Simple_repeat 2 24 0 480 111 0 0 chr5 19135071 19135143 -183950389 + (TA)n Simple_repeat Simple_repeat 2 73 0 253 224 0 0 chr5 19135214 19135263 -183950269 - L1ME4a LINE L1 -106 6015 5967 4198 180 51 28 chr5 19136671 19137395 -183948137 - L1MB2 LINE L1 -4 6167 5461 2265 131 60 23 chr5 19137395 19137746 -183947786 - THE1B LTR MaLR 0 364 1 4198 180 51 28 chr5 19137746 19137876 -183947656 - L1MB2 LINE L1 -710 5461 5335 279 0 0 0 chr5 19137876 19137907 -183947625 + (TG)n Simple_repeat Simple_repeat 2 32 0 4198 180 51 28 chr5 19137907 19138505 -183947027 - L1MB2 LINE L1 -836 5335 4677 336 379 17 34 chr5 19138702 19138879 -183946653 + MIR3 SINE MIR 32 205 -3 367 137 27 0 chr5 19138992 19139065 -183946467 + (TA)n Simple_repeat Simple_repeat 2 76 0 299 223 6 3 chr5 19139966 19140093 -183945439 + MER5A DNA MER1_type 4 188 -1 396 0 0 0 chr5 19140678 19140722 -183944810 + (TG)n Simple_repeat Simple_repeat 2 45 0 1989 197 69 17 chr5 19141303 19141449 -183944083 - L1MD3 LINE L1 -8 7987 7850 2727 155 7 0 chr5 19141449 19141874 -183943658 + MSTC LTR MaLR 1 428 0 1989 197 69 17 chr5 19141874 19142251 -183943281 - L1MD3 LINE L1 -145 7850 7437 16073 208 29 18 chr5 19142388 19149104 -183936428 - L1PA15 LINE L1 -3 6813 6 783 295 115 25 chr5 19150001 19150167 -183935365 + LTR16C LTR ERVL 91 241 -250 1165 161 19 5 chr5 19150167 19150372 -183935160 + MER3 DNA MER1_type 1 208 -1 783 295 115 25 chr5 19150372 19150571 -183934961 + LTR16C LTR ERVL 241 489 -2 2479 55 14 0 chr5 19151052 19151345 -183934187 - AluSp SINE Alu -16 297 1 1020 276 77 8 chr5 19151890 19152397 -183933135 + L1ME3A LINE L1 4177 4718 -1428 1386 248 31 26 chr5 19152552 19152824 -183932708 + L1ME3A LINE L1 4923 5192 -978 2258 121 98 3 chr5 19152824 19153213 -183932319 - MSTA LTR MaLR -2 426 1 1386 248 31 26 chr5 19153213 19153689 -183931843 + L1ME3A LINE L1 5192 5672 -498 186 43 0 0 chr5 19153776 19153799 -183931733 + (TG)n Simple_repeat Simple_repeat 2 24 0 307 209 60 0 chr5 19153848 19153982 -183931550 + (TA)n Simple_repeat Simple_repeat 2 143 0 1351 203 161 5 chr5 19153983 19154388 -183931144 + L1ME3A LINE L1 5660 6127 -43 324 321 7 15 chr5 19155355 19155492 -183930040 + L1M3c LINE L1 1 136 -6005 * 559 343 40 17 chr5 19155461 19155863 -183929669 + L1M3c LINE L1 13 423 -5718 328 254 55 0 chr5 19156020 19156130 -183929402 + L1M3c LINE L1 814 929 -5212 3747 144 80 38 chr5 19156131 19156956 -183928576 + L1MA10 LINE L1 5472 6331 -3 1858 181 13 10 chr5 19160141 19160450 -183925082 - AluJo SINE Alu -2 310 1 1311 172 65 8 chr5 19160654 19160979 -183924553 - Tigger4(Zombi) DNA MER2_type 0 2731 12 757 138 60 0 chr5 19161277 19161393 -183924139 + FLAM_C SINE Alu 2 124 -9 339 143 0 0 chr5 19161431 19161494 -183924038 + L1MA5A LINE L1 4408 4470 -1676 6401 140 12 15 chr5 19161494 19163360 -183922172 + L1MA5A LINE L1 4435 6291 -6 852 313 60 13 chr5 19164383 19164837 -183920695 - LTR33 LTR ERVL -8 513 39 205 238 95 16 chr5 19166685 19166748 -183918784 + L2 LINE L2 3155 3222 -50 258 267 22 11 chr5 19167061 19167151 -183918381 + MER117 DNA MER1_type 1 91 -106 1140 176 63 4 chr5 19168791 19169029 -183916503 - L1MA4 LINE L1 -11 6289 6038 1356 153 18 0 chr5 19169048 19169270 -183916262 - L1PA16 LINE L1 -9 6157 5932 417 161 86 0 chr5 19169270 19169363 -183916169 - L1MA4 LINE L1 -255 6045 5945 * 1681 181 27 6 chr5 19169361 19169726 -183915806 + L1 LINE L1 4616 4988 -1158 1665 211 48 4 chr5 19169727 19170182 -183915350 - Charlie4a DNA MER1_type 0 508 34 2453 81 0 3 chr5 19170182 19170491 -183915041 - AluSx SINE Alu -4 308 1 2278 118 16 16 chr5 19170517 19170890 -183914642 - THE1C LTR MaLR 0 375 3 394 270 100 91 chr5 19171228 19171469 -183914063 - L2 LINE L2 0 3272 3030 319 368 59 30 chr5 19171553 19171993 -183913539 - L2 LINE L2 -421 2893 2441 449 332 111 9 chr5 19172067 19172410 -183913122 - L2 LINE L2 -1209 2105 1728 1374 239 116 64 chr5 19172797 19173390 -183912142 - MLT1E3 LTR MaLR 0 624 1 912 284 61 19 chr5 19173590 19173949 -183911583 - LTR16B LTR ERVL -81 383 10 593 14 0 0 chr5 19174511 19174583 -183910949 - L1P LINE L1 -3665 2481 2410 290 263 13 0 chr5 19174879 19174955 -183910577 + Charlie8 DNA MER1_type 2341 2417 0 254 340 70 49 chr5 19175083 19175268 -183910264 - L2 LINE L2 -130 3183 2995 318 223 58 29 chr5 19176522 19176609 -183908923 + L1PB4 LINE L1 6046 6138 -28 185 0 40 0 chr5 19176609 19176634 -183908898 + (TA)n Simple_repeat Simple_repeat 2 27 0 318 223 58 29 chr5 19176634 19176649 -183908883 + L1PB4 LINE L1 6138 6151 -15 382 193 211 0 chr5 19176701 19176815 -183908717 - LTR16C LTR ERVL -1 490 353 408 265 66 13 chr5 19176914 19177065 -183908467 - L2 LINE L2 0 3313 3155 1061 202 27 62 chr5 19177077 19177413 -183908119 + MER33 DNA MER1_type 1 324 0 397 224 31 20 chr5 19177439 19177537 -183907995 + MER5A DNA MER1_type 14 112 -77 3648 287 83 68 chr5 19177726 19178830 -183906702 - L2 LINE L2 -262 3051 1914 2204 126 96 18 chr5 19178830 19179227 -183906305 - MSTA LTR MaLR 0 428 1 3648 287 83 68 chr5 19179227 19179924 -183905608 - L2 LINE L2 -1399 1914 1229 249 303 83 7 chr5 19179926 19180071 -183905461 + MLT1J LTR MaLR 1 156 -355 387 0 0 0 chr5 19180188 19180231 -183905301 + (TA)n Simple_repeat Simple_repeat 1 43 0 225 204 20 10 chr5 19180312 19180410 -183905122 + (TA)n Simple_repeat Simple_repeat 2 100 0 755 277 103 5 chr5 19180466 19180913 -183904619 + MLT1G1 LTR MaLR 84 595 0 273 302 108 35 chr5 19181064 19181352 -183904180 + MLT1G1-int LTR MaLR 255 563 -808 364 263 30 126 chr5 19181923 19182229 -183903303 + MLT1G1-int LTR MaLR 1032 1297 -74 2941 160 0 16 chr5 19182229 19182722 -183902810 + MER66B LTR ERV1 1 485 -1 364 263 30 126 chr5 19182722 19182787 -183902745 + MLT1G1-int LTR MaLR 1297 1367 -4 1097 250 44 14 chr5 19182787 19183083 -183902449 + MLT1G1 LTR MaLR 1 305 -290 458 289 7 14 chr5 19183144 19183286 -183902246 + MLT1G1 LTR MaLR 453 593 -2 489 312 69 14 chr5 19183299 19183575 -183901957 - L1MEc LINE L1 -4831 1479 1189 262 154 108 0 chr5 19183636 19183701 -183901831 + L1M4c LINE L1 1266 1337 -5047 249 216 102 0 chr5 19183728 19183816 -183901716 - L1MEc LINE L1 -5123 996 900 304 324 9 0 chr5 19183940 19184051 -183901481 - L1MEc LINE L1 -5448 671 560 464 317 94 64 chr5 19184148 19184583 -183900949 - L1MEc LINE L1 -5663 456 9 185 0 40 0 chr5 19185514 19185539 -183899993 + (TAA)n Simple_repeat Simple_repeat 2 27 0 946 49 16 44 chr5 19186096 19186130 -183899402 + (TTTC)n Simple_repeat Simple_repeat 1 211 0 946 49 16 44 chr5 19186130 19186313 -183899219 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 668 204 0 0 chr5 19186398 19186511 -183899021 - FLAM_A SINE Alu -29 113 1 378 0 0 0 chr5 19186690 19186732 -183898800 + (TA)n Simple_repeat Simple_repeat 1 42 0 1776 161 0 0 chr5 19186785 19187059 -183898473 + AluSx SINE Alu 38 311 -1 770 189 6 47 chr5 19187524 19187716 -183897816 + MLT2C2 LTR ERVL 214 464 0 216 0 0 0 chr5 19187748 19187772 -183897760 + (CA)n Simple_repeat Simple_repeat 2 25 0 204 259 9 17 chr5 19189111 19189227 -183896305 + GA-rich Low_complexity Low_complexity 1 115 0 19437 156 105 14 chr5 19189296 19194788 -183890744 + L1M1 LINE L1 13 6028 -1537 2104 94 0 4 chr5 19194788 19195063 -183890469 + AluSq SINE Alu 40 313 0 2639 171 63 4 chr5 19195068 19195530 -183890002 + MER41D LTR ERV1 63 551 -6 1233 285 93 2 chr5 19195553 19195970 -183889562 - L2 LINE L2 -730 2584 2130 216 322 76 8 chr5 19195963 19196081 -183889451 - MIR SINE MIR -89 173 48 * 279 317 110 37 chr5 19196692 19196856 -183888676 - MIR3 SINE MIR -1 207 32 476 284 85 0 chr5 19197097 19197238 -183888294 + MIR SINE MIR 110 262 0 202 321 51 51 chr5 19197256 19197393 -183888139 + MIR SINE MIR 40 143 -65 24 77 0 0 chr5 19199031 19199083 -183886449 + AT_rich Low_complexity Low_complexity 1 52 0 638 106 10 0 chr5 19199084 19199188 -183886344 - L1PA13 LINE L1 -5 6158 6054 1820 250 88 20 chr5 19200081 19201262 -183884270 + L1MEc LINE L1 1846 3066 -3149 1128 266 155 12 chr5 19201446 19202051 -183883481 + L1MEc LINE L1 3333 4024 -2191 33 0 0 23 chr5 19202071 19202091 -183883441 + AT_rich Low_complexity Low_complexity 1 20 -23 1738 176 0 37 chr5 19202091 19202415 -183883117 - AluSx SINE Alu 0 312 1 33 0 0 23 chr5 19202415 19202438 -183883094 + AT_rich Low_complexity Low_complexity 20 43 0 1355 258 74 27 chr5 19202473 19203027 -183882505 + L1MEc LINE L1 4608 5187 -1028 2025 156 106 14 chr5 19203280 19203697 -183881835 - MLT1D LTR MaLR -10 495 41 1944 136 3 20 chr5 19205821 19206122 -183879410 - AluSq SINE Alu -17 296 1 546 284 124 63 chr5 19206622 19206953 -183878579 + L2 LINE L2 2963 3313 0 314 222 19 28 chr5 19207535 19207643 -183877889 + (TA)n Simple_repeat Simple_repeat 2 108 0 3587 26 0 0 chr5 19208437 19208860 -183876672 - L1PA2 LINE L1 0 6155 5733 408 71 0 0 chr5 19208937 19208993 -183876539 + (TG)n Simple_repeat Simple_repeat 2 57 0 1677 167 70 19 chr5 19209330 19209701 -183875831 + MLT1B LTR MaLR 1 390 0 232 220 20 0 chr5 19209790 19209840 -183875692 + MLT1H LTR MaLR 73 123 -426 * 598 314 29 41 chr5 19209834 19210165 -183875367 + LTR33 LTR ERVL 5 357 -164 2042 122 74 14 chr5 19210165 19210518 -183875014 + THE1C LTR MaLR 2 375 0 598 314 29 41 chr5 19210518 19210630 -183874902 + LTR33 LTR ERVL 357 469 -52 180 0 0 0 chr5 19210743 19210763 -183874769 + (TGG)n Simple_repeat Simple_repeat 3 22 0 830 235 181 91 chr5 19211132 19211191 -183874341 + MLT1H LTR MaLR 1 53 -496 2371 116 11 30 chr5 19211191 19211562 -183873970 - THE1B LTR MaLR 0 364 1 830 235 181 91 chr5 19211562 19211955 -183873577 + MLT1H LTR MaLR 53 534 -15 353 324 7 21 chr5 19211976 19212121 -183873411 - MLT1J LTR MaLR -141 370 228 3593 71 9 4 chr5 19212490 19212957 -183872575 - MER41A LTR ERV1 -85 469 1 13170 86 23 4 chr5 19212957 19214775 -183870757 - MER41A-int LTR ERV1 -2 5944 4092 * 14110 124 84 42 chr5 19214757 19218303 -183867229 - MER41A-int LTR ERV1 -2189 3757 1 21 0 0 0 chr5 19218432 19218453 -183867079 + AT_rich Low_complexity Low_complexity 1 21 0 390 237 52 10 chr5 19218816 19218913 -183866619 - MER5C DNA MER1_type -204 120 20 683 279 66 61 chr5 19219036 19219413 -183866119 - LTR16C LTR ERVL -15 476 98 22 0 0 0 chr5 19219992 19220014 -183865518 + AT_rich Low_complexity Low_complexity 1 22 0 1820 130 61 66 chr5 19220346 19220723 -183864809 + THE1C LTR MaLR 1 375 0 244 217 174 0 chr5 19220998 19221067 -183864465 - MIR SINE MIR -76 186 106 312 294 81 36 chr5 19221604 19222101 -183863431 - L1M4 LINE L1 -1527 4619 4101 757 129 0 0 chr5 19223669 19223785 -183861747 + AluY SINE Alu 194 309 -2 2434 90 0 0 chr5 19223934 19224244 -183861288 - AluSx SINE Alu -2 310 1 248 292 136 58 chr5 19225234 19225542 -183859990 + MLT1K LTR MaLR 210 541 -47 24 0 0 0 chr5 19225564 19225588 -183859944 + AT_rich Low_complexity Low_complexity 1 24 0 249 174 0 0 chr5 19225614 19225660 -183859872 + L2 LINE L2 2998 3043 -229 238 255 0 0 chr5 19226423 19226474 -183859058 + (CA)n Simple_repeat Simple_repeat 2 52 0 593 314 74 35 chr5 19226729 19227012 -183858520 - L2 LINE L2 -1074 2240 1947 3970 221 46 25 chr5 19227018 19228430 -183857102 + L1M4 LINE L1 3119 4574 -2991 2312 111 19 6 chr5 19228461 19228820 -183856712 + L1PB1 LINE L1 5788 6151 0 1577 329 86 32 chr5 19228839 19229981 -183855551 - L2 LINE L2 -1362 1952 750 396 269 186 84 chr5 19229981 19230315 -183855217 - L2 LINE L2 -2825 489 122 364 337 151 12 chr5 19231406 19231572 -183853960 + MIR3 SINE MIR 9 197 -11 309 293 84 19 chr5 19231630 19231845 -183853687 + L1ME LINE L1 5383 5611 -510 395 91 0 15 chr5 19231931 19231997 -183853535 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 21 0 0 0 chr5 19232152 19232173 -183853359 + AT_rich Low_complexity Low_complexity 1 21 0 193 330 50 20 chr5 19232189 19232289 -183853243 - L2 LINE L2 0 3313 3211 243 0 0 0 chr5 19232364 19232391 -183853141 + (T)n Simple_repeat Simple_repeat 1 27 0 564 332 19 5 chr5 19232391 19232596 -183852936 - L2 LINE L2 -251 3062 2855 1044 267 26 114 chr5 19232710 19233351 -183852181 - L2 LINE L2 -458 2856 2272 1210 281 53 41 chr5 19234326 19234814 -183850718 - MLT1K LTR MaLR -4 584 91 1439 187 79 50 chr5 19234817 19235196 -183850336 - MLT1B LTR MaLR 0 390 1 446 318 46 0 chr5 19235821 19235994 -183849538 + LTR16A LTR ERVL 1 181 -269 248 212 91 15 chr5 19236011 19236143 -183849389 + L1M4 LINE L1 5651 5792 -1773 3342 311 61 21 chr5 19236503 19238279 -183847253 - HERV16 LTR ERVL -3085 1911 1 1050 312 122 15 chr5 19238285 19238686 -183846846 - LTR16A LTR ERVL -6 444 1 1098 120 0 13 chr5 19238724 19238882 -183846650 - AluSg/x SINE Alu -1 311 156 338 308 68 27 chr5 19238925 19239217 -183846315 - L1M4 LINE L1 -5128 1414 1111 27 0 0 0 chr5 19239602 19239629 -183845903 + AT_rich Low_complexity Low_complexity 1 27 0 1456 124 42 0 chr5 19239633 19239874 -183845658 - L1MA5A LINE L1 -9 6288 6038 397 227 0 0 chr5 19239795 19239883 -183845649 - L1MA4A LINE L1 -185 6118 6031 417 312 108 19 chr5 19239986 19240143 -183845389 + MER91A DNA MER1_type 1 171 -25 523 347 134 48 chr5 19240940 19241297 -183844235 + L2 LINE L2 2877 3264 -8 1266 163 30 72 chr5 19241389 19241653 -183843879 + AluJo SINE Alu 1 253 -59 7697 204 60 6 chr5 19241879 19244740 -183840792 - L1MB4 LINE L1 -2 6676 3659 1999 161 3 0 chr5 19244779 19245090 -183840442 - AluJb SINE Alu 0 312 1 4806 226 99 20 chr5 19245097 19246964 -183838568 - L1MB4 LINE L1 -3773 2871 802 381 282 69 42 chr5 19247310 19247526 -183838006 - L1MB4 LINE L1 -6320 222 1 198 0 0 0 chr5 19247533 19247555 -183837977 + (T)n Simple_repeat Simple_repeat 1 22 0 1186 171 60 51 chr5 19248735 19249043 -183836489 - L1PB4 LINE L1 -7 6149 5841 21 71 0 0 chr5 19251664 19251706 -183833826 + AT_rich Low_complexity Low_complexity 1 42 0 1606 171 193 11 chr5 19255103 19255465 -183830067 + MSTA LTR MaLR 1 428 0 8401 146 10 41 chr5 19255468 19256908 -183828624 + MSTA-int LTR MaLR 4 1399 -181 563 206 0 0 chr5 19257083 19257180 -183828352 - Tigger7 DNA MER2_type -1 2486 2390 1526 201 15 0 chr5 19257181 19257444 -183828088 - Tigger7 DNA MER2_type -2220 267 1 187 250 132 29 chr5 19257502 19257570 -183827962 + L2 LINE L2 3194 3268 -4 992 227 9 14 chr5 19257639 19257859 -183827673 + MER20 DNA MER1_type 1 219 0 1256 158 35 0 chr5 19260311 19260565 -183824967 - L1MA9 LINE L1 -6 6306 6044 25 90 0 0 chr5 19260693 19260760 -183824772 + AT_rich Low_complexity Low_complexity 1 67 0 223 250 0 0 chr5 19261557 19261601 -183823931 + polypurine Low_complexity Low_complexity 1 44 0 904 296 96 39 chr5 19262129 19262654 -183822878 + L2 LINE L2 2757 3311 -2 772 256 55 0 chr5 19262760 19262959 -183822573 - MER63A DNA MER1_type 0 210 1 374 345 9 0 chr5 19262981 19263094 -183822438 + MIR SINE MIR 36 149 -59 364 329 48 17 chr5 19263360 19263652 -183821880 - L1MEc LINE L1 -2469 3746 3446 207 162 0 0 chr5 19264281 19264318 -183821214 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 301 196 0 0 chr5 19264322 19264378 -183821154 - L1MC4 LINE L1 -1339 6703 6648 378 215 81 13 chr5 19264443 19264592 -183820940 - L1MEc LINE L1 -3784 2431 2273 330 280 82 48 chr5 19264884 19265091 -183820441 - L1MEc LINE L1 -4567 1829 1616 302 376 8 8 chr5 19265384 19265501 -183820031 - L2 LINE L2 -5 3308 3192 235 219 16 47 chr5 19265774 19265838 -183819694 - L1P LINE L1 -3276 2870 2809 497 271 54 50 chr5 19266004 19266284 -183819248 - MLT1J LTR MaLR 0 511 231 236 279 15 0 chr5 19266331 19266399 -183819133 - MLT1L LTR MaLR -342 273 205 1214 256 0 6 chr5 19267270 19267606 -183817926 - L1PB1 LINE L1 -1017 5129 4796 * 5882 107 9 0 chr5 19267599 19268550 -183816982 + L1PB1 LINE L1 5147 6104 -47 202 106 43 21 chr5 19268984 19269031 -183816501 + GA-rich Low_complexity Low_complexity 2 49 0 241 301 215 22 chr5 19269045 19269361 -183816171 - L2 LINE L2 -635 2679 2303 236 258 113 0 chr5 19269414 19269476 -183816056 - L2 LINE L2 0 3313 3245 304 343 87 18 chr5 19269788 19270007 -183815525 + MIR SINE MIR 2 235 -27 547 338 97 25 chr5 19270042 19270566 -183814966 - L2 LINE L2 -1225 2089 1528 383 242 20 10 chr5 19272638 19272737 -183812795 - MER103 DNA DNA -64 102 3 1996 118 4 0 chr5 19274233 19274496 -183811036 - AluSp SINE Alu -47 266 3 345 267 109 43 chr5 19274686 19275011 -183810521 + MLT1J2 LTR MaLR 1 448 -2 296 341 10 73 chr5 19275703 19275908 -183809624 + MIR SINE MIR 23 214 -48 241 280 0 0 chr5 19276988 19277038 -183808494 + (CGTG)n Simple_repeat Simple_repeat 4 53 0 343 279 27 23 chr5 19277114 19277308 -183808224 + L1M4b LINE L1 -533 4294967217 -6359 730 164 62 69 chr5 19277384 19277553 -183807979 - MLT1A1 LTR MaLR 0 365 212 416 271 5 145 chr5 19278025 19278239 -183807293 + MER5A DNA MER1_type 3 186 -3 1280 232 42 10 chr5 19278981 19279364 -183806168 + MER114 LTR ERV 7 401 -247 895 311 37 63 chr5 19279431 19279894 -183805638 + L1M4b LINE L1 175 625 -5688 272 271 59 12 chr5 19279878 19279963 -183805569 + L1M4b LINE L1 985 1073 -5240 * 3229 219 33 7 chr5 19280172 19281006 -183804526 + L1M4b LINE L1 777 1783 -4530 42 20 0 0 chr5 19281055 19281104 -183804428 + AT_rich Low_complexity Low_complexity 1 49 0 417 188 0 0 chr5 19281104 19281189 -183804343 + (TA)n Simple_repeat Simple_repeat 2 86 0 246 276 23 0 chr5 19281190 19281277 -183804255 - L1MC4 LINE L1 -1339 6703 6615 307 173 0 0 chr5 19281282 19281334 -183804198 - L1MC4 LINE L1 -1339 6703 6652 957 218 120 61 chr5 19281642 19282010 -183803522 + MLT1G1 LTR MaLR 1 357 -185 786 196 5 43 chr5 19282465 19282649 -183802883 - MER5B DNA MER1_type 0 178 2 2647 158 22 16 chr5 19282771 19283219 -183802313 + LTR32 LTR ERVL 21 471 0 525 302 108 26 chr5 19283283 19283661 -183801871 + MLT1I LTR MaLR 1 409 0 1848 231 73 28 chr5 19284761 19285293 -183800239 - MER74A LTR ERVL -2 556 1 1423 257 70 23 chr5 19285369 19285844 -183799688 - MLT1F1 LTR MaLR 0 567 71 292 209 236 18 chr5 19286145 19286193 -183799339 + MER94 DNA DNA 1 37 -97 2566 107 6 11 chr5 19286193 19286559 -183798973 + THE1B LTR MaLR 1 364 0 292 209 236 18 chr5 19286559 19286620 -183798912 + MER94 DNA DNA 37 134 0 35434 35 19 1 chr5 19287243 19292799 -183792733 + L1PA3 LINE L1 13 5697 -458 1207 33 0 13 chr5 19293369 19293521 -183792011 + L1PA3 LINE L1 6006 6155 0 2381 94 0 0 chr5 19293957 19294254 -183791278 - AluY SINE Alu -14 297 1 236 231 22 22 chr5 19295062 19295153 -183790379 + MLT1H LTR MaLR 68 137 -272 1052 221 71 69 chr5 19295175 19295568 -183789964 + MSTD LTR MaLR 3 396 0 234 236 34 101 chr5 19295694 19295842 -183789690 + MLT1H LTR MaLR 405 542 -7 1469 210 25 33 chr5 19295994 19296356 -183789176 + MLT1A1 LTR MaLR 2 360 -5 5252 88 12 7 chr5 19296981 19297732 -183787800 + L1PA13 LINE L1 5408 6162 -1 183 353 140 7 chr5 19297881 19298017 -183787515 + L2 LINE L2 366 519 -2795 348 367 117 9 chr5 19298045 19298361 -183787171 - L2 LINE L2 -461 2853 2504 330 26 0 0 chr5 19299529 19299568 -183785964 + (TG)n Simple_repeat Simple_repeat 2 40 0 1227 213 62 58 chr5 19299972 19300437 -183785095 + MLT1C LTR MaLR 1 467 0 403 206 0 64 chr5 19300437 19300578 -183784954 + MER96B DNA MER1_type? 43 174 -243 225 0 0 0 chr5 19304059 19304084 -183781448 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1653 166 57 38 chr5 19305205 19305572 -183779960 - MLT1A2 LTR MaLR 0 374 1 255 230 14 54 chr5 19305595 19305669 -183779863 + L2 LINE L2 3025 3095 -177 1782 155 8 20 chr5 19305936 19306318 -183779214 - Tigger3(Golem) DNA MER2_type -1 3028 4 21 0 0 0 chr5 19306349 19306370 -183779162 + AT_rich Low_complexity Low_complexity 1 21 0 466 196 122 14 chr5 19306882 19307030 -183778502 + MER5C DNA MER1_type 127 290 -34 1006 170 100 5 chr5 19307447 19307647 -183777885 - MER20 DNA MER1_type 0 219 1 311 287 49 25 chr5 19307672 19307794 -183777738 - MIR SINE MIR -93 169 45 42153 36 0 3 chr5 19308011 19314218 -183771314 + L1PA3 LINE L1 1 6191 0 286 305 21 0 chr5 19314386 19314527 -183771005 - L1ME4a LINE L1 -229 5892 5749 182 363 62 0 chr5 19314583 19314663 -183770869 - MIR SINE MIR -40 222 138 2046 127 0 10 chr5 19315129 19315421 -183770111 + AluSx SINE Alu 22 310 -2 336 328 21 21 chr5 19315901 19316090 -183769442 - MLT1J LTR MaLR -92 419 231 1117 256 0 6 chr5 19317173 19317509 -183768023 - L1PB1 LINE L1 -1017 5129 4796 * 5577 109 5 0 chr5 19317502 19318455 -183767077 + L1PB1 LINE L1 5147 6104 -47 180 111 0 0 chr5 19318898 19318925 -183766607 + (GA)n Simple_repeat Simple_repeat 2 28 0 263 298 215 22 chr5 19318950 19319266 -183766266 - L2 LINE L2 -635 2679 2303 237 258 113 0 chr5 19319319 19319381 -183766151 - L2 LINE L2 0 3313 3245 304 343 87 18 chr5 19319694 19319913 -183765619 + MIR SINE MIR 2 235 -27 565 336 97 25 chr5 19319948 19320472 -183765060 - L2 LINE L2 -1225 2089 1528 350 237 21 10 chr5 19322541 19322638 -183762894 - MER103 DNA DNA -64 102 5 2032 113 4 0 chr5 19324136 19324401 -183761131 - AluSp SINE Alu -47 266 1 308 269 78 14 chr5 19324615 19324756 -183760776 + MLT1J2 LTR MaLR 34 183 -267 263 255 137 65 chr5 19324757 19324910 -183760622 + MLT1J2 LTR MaLR 285 448 -2 296 341 10 73 chr5 19325602 19325807 -183759725 + MIR SINE MIR 23 214 -48 241 280 0 0 chr5 19326887 19326937 -183758595 + (CGTG)n Simple_repeat Simple_repeat 4 53 0 303 270 24 22 chr5 19327013 19327175 -183758357 + L1M4b LINE L1 -533 4294967217 -6359 677 162 65 65 chr5 19327283 19327437 -183758095 - MLT1A1 LTR MaLR 0 365 212 422 271 5 145 chr5 19327924 19328138 -183757394 + MER5A DNA MER1_type 3 186 -3 1181 232 42 10 chr5 19328880 19329263 -183756269 + MER114 LTR ERV 7 401 -247 752 311 37 63 chr5 19329330 19329793 -183755739 + L1M4b LINE L1 175 625 -5688 242 253 67 13 chr5 19329787 19329862 -183755670 + L1M4b LINE L1 995 1073 -5240 * 2969 219 34 7 chr5 19330071 19330904 -183754628 + L1M4b LINE L1 777 1783 -4530 312 252 84 15 chr5 19330973 19331104 -183754428 + L1M4b LINE L1 1881 2020 -4362 * 333 303 0 0 chr5 19331053 19331142 -183754390 - L1MC4 LINE L1 -1339 6703 6615 311 182 0 0 chr5 19331147 19331202 -183754330 - L1MC4 LINE L1 -1339 6703 6649 858 219 120 61 chr5 19331507 19331875 -183753657 + MLT1G1 LTR MaLR 1 357 -185 782 196 5 43 chr5 19332326 19332510 -183753022 - MER5B DNA MER1_type 0 178 2 2492 158 22 16 chr5 19332632 19333080 -183752452 + LTR32 LTR ERVL 21 471 0 493 301 108 29 chr5 19333144 19333523 -183752009 + MLT1I LTR MaLR 1 409 0 1882 226 73 28 chr5 19334623 19335155 -183750377 - MER74A LTR ERVL -2 556 1 1285 257 70 23 chr5 19335231 19335706 -183749826 - MLT1F1 LTR MaLR 0 567 71 262 213 241 19 chr5 19336007 19336055 -183749477 + MER94 DNA DNA 1 37 -97 2586 104 6 11 chr5 19336055 19336421 -183749111 + THE1B LTR MaLR 1 364 0 262 213 241 19 chr5 19336421 19336480 -183749052 + MER94 DNA DNA 37 132 -2 40405 34 22 2 chr5 19337105 19343159 -183742373 + L1PA3 LINE L1 13 6193 0 319 305 21 0 chr5 19343328 19343469 -183742063 - L1ME4a LINE L1 -229 5892 5749 181 363 62 0 chr5 19343525 19343605 -183741927 - MIR SINE MIR -40 222 138 2037 114 0 11 chr5 19344069 19344350 -183741182 + AluSx SINE Alu 22 299 -13 271 296 52 37 chr5 19344997 19345132 -183740400 + MER117 DNA MER1_type 3 139 -58 1795 251 48 39 chr5 19345756 19346576 -183738956 - Charlie2 DNA MER1_type -11 2851 2025 2527 66 3 0 chr5 19346742 19347045 -183738487 + AluSp SINE Alu 2 305 -8 25 0 0 0 chr5 19347400 19347425 -183738107 + AT_rich Low_complexity Low_complexity 1 25 0 2105 152 8 14 chr5 19347508 19347871 -183737661 + MLT1A1 LTR MaLR 5 365 0 317 159 0 14 chr5 19348433 19348502 -183737030 + (TG)n Simple_repeat Simple_repeat 2 69 0 656 328 50 55 chr5 19348744 19349329 -183736203 + ERVL LTR ERVL 3617 4405 -798 334 354 137 15 chr5 19349341 19349604 -183735928 - L2 LINE L2 -566 2748 2454 5920 212 10 6 chr5 19350717 19351060 -183734472 - L1PA16 LINE L1 -1 6165 5825 189 74 0 0 chr5 19351060 19351087 -183734445 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2002 109 22 0 chr5 19351087 19351363 -183734169 - AluSc SINE Alu -27 282 1 5920 212 10 6 chr5 19351363 19353145 -183732387 - L1PA16 LINE L1 -340 5826 4043 243 376 40 10 chr5 19353193 19353294 -183732238 - L2 LINE L2 -2 3311 3208 620 150 9 0 chr5 19354529 19354642 -183730890 + GA-rich Low_complexity Low_complexity 1 114 0 435 252 118 0 chr5 19354752 19354871 -183730661 + MLT1J2 LTR MaLR 72 204 -246 267 308 98 7 chr5 19356706 19356849 -183728683 - MIR SINE MIR -44 218 63 1151 349 69 40 chr5 19358006 19359010 -183726522 + ERVL LTR ERVL 791 1823 -3941 6159 97 21 1 chr5 19359022 19359981 -183725551 - L1PB1 LINE L1 -1 6150 5174 7756 201 22 45 chr5 19359981 19360022 -183725510 + L1 LINE L1 3234 3274 -2872 2599 42 3 0 chr5 19360022 19360329 -183725203 + AluY SINE Alu 1 308 -3 7756 201 22 45 chr5 19360329 19361527 -183724005 + L1 LINE L1 3274 4414 -1732 209 0 97 0 chr5 19361527 19361558 -183723974 + A-rich Low_complexity Low_complexity 4 37 0 7756 201 22 45 chr5 19361558 19362290 -183723242 + L1 LINE L1 4414 5161 -985 1564 326 99 36 chr5 19362293 19364106 -183721426 + ERVL LTR ERVL 1775 3708 -1777 1300 313 18 20 chr5 19364393 19364837 -183720695 + ERVL LTR ERVL 4109 4551 -1213 877 310 56 9 chr5 19364941 19365260 -183720272 + ERVL LTR ERVL 4745 5078 -686 297 75 0 0 chr5 19365553 19365593 -183719939 + (TA)n Simple_repeat Simple_repeat 1 40 0 1627 177 62 6 chr5 19366505 19366827 -183718705 + MER2 DNA MER2_type 6 345 0 24 32 0 0 chr5 19367074 19367105 -183718427 + AT_rich Low_complexity Low_complexity 1 31 0 198 244 165 55 chr5 19367729 19367856 -183717676 + L2 LINE L2 3173 3313 0 240 278 113 17 chr5 19367923 19368038 -183717494 - MIR SINE MIR -67 141 16 2212 231 68 49 chr5 19368331 19369233 -183716299 - L1M4 LINE L1 -838 6119 5201 1685 233 36 10 chr5 19370442 19370828 -183714704 - L1M4 LINE L1 -6460 399 4 563 327 48 56 chr5 19370840 19371894 -183713638 - L1MEc LINE L1 -5312 1084 39 24 67 0 0 chr5 19371915 19371960 -183713572 + AT_rich Low_complexity Low_complexity 1 45 0 2045 144 3 0 chr5 19373055 19373354 -183712178 + AluSx SINE Alu 1 300 -12 299 122 0 0 chr5 19373553 19373616 -183711916 + Alu SINE Alu 239 301 0 345 24 0 0 chr5 19373907 19373949 -183711583 + (TG)n Simple_repeat Simple_repeat 1 42 0 367 311 49 18 chr5 19374080 19374244 -183711288 + MIR SINE MIR 5 173 -89 205 328 17 0 chr5 19374775 19374833 -183710699 + L2 LINE L2 3012 3070 -243 23 86 0 0 chr5 19375335 19375393 -183710139 + AT_rich Low_complexity Low_complexity 1 58 0 239 313 0 36 chr5 19375587 19375699 -183709833 + MLT1H LTR MaLR 66 173 -376 4266 170 11 12 chr5 19375814 19376548 -183708984 - MER44D DNA MER2_type 0 605 1 22 56 0 0 chr5 19376675 19376711 -183708821 + AT_rich Low_complexity Low_complexity 1 36 0 442 326 75 27 chr5 19376840 19377134 -183708398 + L1ME4a LINE L1 5576 5883 -238 3034 124 17 2 chr5 19377267 19377839 -183707693 - L1PA16 LINE L1 0 6166 5486 3190 203 18 18 chr5 19377846 19378631 -183706901 + L1 LINE L1 3103 3887 -2259 366 316 83 23 chr5 19378975 19379108 -183706424 - MLT1K LTR MaLR -408 180 40 1946 157 0 20 chr5 19380170 19380476 -183705056 - AluSx SINE Alu -12 300 1 188 344 58 63 chr5 19380646 19380835 -183704697 + MIR3 SINE MIR 16 203 -5 565 218 18 0 chr5 19380934 19381044 -183704488 + HERVL40 LTR ERVL 2794 2905 -2625 739 301 53 61 chr5 19381216 19381592 -183703940 - L2 LINE L2 -682 2632 2260 242 246 14 0 chr5 19381601 19381670 -183703862 - L2 LINE L2 -1320 1994 1925 391 377 52 0 chr5 19381676 19381867 -183703665 - L2 LINE L2 -2070 1244 1044 1697 297 25 6 chr5 19381879 19382398 -183703134 + HERVL40 LTR ERVL 2641 3169 -2595 397 171 40 0 chr5 19382423 19382499 -183703033 - LTR40a LTR ERVL -416 103 25 1315 263 64 12 chr5 19382511 19382838 -183702694 + LTR40a LTR ERVL 169 512 -7 364 250 28 19 chr5 19382851 19382959 -183702573 + HERVL40 LTR ERVL 8 116 -5414 370 254 87 22 chr5 19383261 19383399 -183702133 + HERVL40 LTR ERVL 1077 1223 -4307 342 208 0 26 chr5 19383489 19383566 -183701966 + HERVL40 LTR ERVL 1455 1529 -4001 3002 253 78 16 chr5 19383630 19384436 -183701096 + HERVL40 LTR ERVL 2050 2905 -2625 256 150 0 0 chr5 19384439 19384479 -183701053 + LTR40b LTR ERVL 423 462 0 619 241 19 6 chr5 19384490 19384648 -183700884 - LTR40a LTR ERVL -359 160 1 2847 244 62 25 chr5 19384687 19385037 -183700495 + HERVL40 LTR ERVL 3765 4101 -1663 1854 180 30 45 chr5 19385037 19385437 -183700095 - MSTD LTR MaLR 0 396 3 2847 244 62 25 chr5 19385437 19385873 -183699659 + HERVL40 LTR ERVL 4101 4580 -1184 438 231 28 7 chr5 19385879 19386022 -183699510 - L1M LINE L1 -761 5401 5256 1817 130 75 132 chr5 19386142 19386596 -183698936 - MSTA LTR MaLR 0 428 1 953 293 94 19 chr5 19387100 19387481 -183698051 + MLT1H LTR MaLR 15 487 -62 2268 71 34 0 chr5 19387481 19387777 -183697755 - AluY SINE Alu -5 306 1 953 293 94 19 chr5 19387777 19387841 -183697691 + MLT1H LTR MaLR 487 545 -4 1195 68 0 0 chr5 19388265 19388413 -183697119 + AluY SINE Alu 155 302 -9 2044 109 40 7 chr5 19388430 19388732 -183696800 - AluSx SINE Alu 0 312 1 375 264 210 12 chr5 19388876 19389043 -183696489 + MIR SINE MIR 53 252 -10 203 286 29 14 chr5 19389400 19389470 -183696062 - MIR SINE MIR -110 152 82 248 234 143 26 chr5 19390379 19390456 -183695076 - MIR SINE MIR -85 123 38 3848 143 27 15 chr5 19390597 19391141 -183694391 + L1PA16 LINE L1 5485 6040 -126 2436 50 3 3 chr5 19391141 19391443 -183694089 + AluY SINE Alu 1 302 -9 3848 143 27 15 chr5 19391443 19391562 -183693970 + L1PA16 LINE L1 6040 6156 -10 354 154 0 0 chr5 19391785 19391837 -183693695 + tRNA-Arg-CGC tRNA tRNA 2 53 -23 24 0 0 0 chr5 19392386 19392410 -183693122 + AT_rich Low_complexity Low_complexity 1 24 0 892 207 87 115 chr5 19392592 19392993 -183692539 + MLT1C LTR MaLR 35 424 -43 27 49 0 0 chr5 19394277 19394318 -183691214 + AT_rich Low_complexity Low_complexity 1 41 0 1145 204 47 52 chr5 19395566 19395948 -183689584 + LTR37A LTR ERV1 1 380 -46 738 308 25 8 chr5 19395986 19396226 -183689306 - MIR SINE MIR -1 261 18 1276 207 118 5 chr5 19397112 19397494 -183688038 - L1M4 LINE L1 -876 5270 4846 1110 253 38 40 chr5 19397703 19398074 -183687458 - MLT1A2 LTR MaLR -4 370 1 371 287 55 44 chr5 19398178 19398359 -183687173 - MIR3 SINE MIR -6 202 20 1728 138 70 48 chr5 19400495 19400851 -183684681 - THE1B LTR MaLR 0 364 1 34839 91 11 12 chr5 19401101 19407258 -183678274 + L1PA6 LINE L1 11 6153 -1 191 370 9 44 chr5 19407757 19407984 -183677548 - L2 LINE L2 -2652 662 444 182 234 156 62 chr5 19411405 19411469 -183674063 + MER5B DNA MER1_type 35 104 -74 1899 119 36 103 chr5 19412614 19413002 -183672530 + THE1B LTR MaLR 1 362 -2 878 167 111 12 chr5 19413067 19413423 -183672109 + MLT1D LTR MaLR 85 505 0 3062 161 19 9 chr5 19414660 19415239 -183670293 + L1MA9 LINE L1 5728 6312 0 195 42 0 0 chr5 19416614 19416638 -183668894 + (CA)n Simple_repeat Simple_repeat 1 24 0 221 313 0 15 chr5 19416891 19416958 -183668574 - L2 LINE L2 -9 3263 3198 2027 135 10 3 chr5 19417018 19417306 -183668226 + AluSx SINE Alu 1 290 -22 1126 248 148 19 chr5 19417348 19417858 -183667674 + MER52A LTR ERV1 1 656 -1099 594 222 37 7 chr5 19417855 19417990 -183667542 + MER52A LTR ERV1 1616 1754 -1 * 917 214 99 60 chr5 19418405 19418807 -183666725 - MLT1C LTR MaLR -4 463 46 323 302 19 19 chr5 19420598 19420704 -183664828 + MIR3 SINE MIR 98 203 -5 1509 159 23 13 chr5 19422604 19422905 -183662627 - L1MA7 LINE L1 0 6291 5988 1874 181 38 30 chr5 19422917 19423457 -183662075 - MLT2A2 LTR ERVL -8 546 1 1859 185 30 5 chr5 19423460 19423833 -183661699 - L1MA7 LINE L1 -304 5987 5606 * 1879 178 30 25 chr5 19423831 19424263 -183661269 + L1 LINE L1 4869 5302 -844 319 24 0 0 chr5 19424268 19424309 -183661223 - L1PB1 LINE L1 -254 5897 5857 1707 73 30 0 chr5 19424309 19424532 -183661000 + L1PB1 LINE L1 5911 6151 0 376 111 69 0 chr5 19424538 19424610 -183660922 + L1ME LINE L1 5177 5253 -893 257 358 19 6 chr5 19425159 19425321 -183660211 + L1ME LINE L1 5362 5525 -641 1698 199 5 39 chr5 19425368 19425395 -183660137 - MLT2D LTR ERVL -16 398 372 504 0 0 0 chr5 19425395 19425451 -183660081 + (TG)n Simple_repeat Simple_repeat 2 57 0 1698 199 5 39 chr5 19425451 19425835 -183659697 - MLT2D LTR ERVL -42 372 1 289 278 0 21 chr5 19425837 19425934 -183659598 + L1ME LINE L1 5613 5707 -463 374 299 149 5 chr5 19426335 19426536 -183658996 + L2 LINE L2 2468 2697 -617 884 180 115 0 chr5 19426544 19426727 -183658805 - MER3 DNA MER1_type 0 209 6 799 296 40 61 chr5 19426734 19427069 -183658463 + L2 LINE L2 2712 3027 -286 1865 146 86 29 chr5 19427069 19427488 -183658044 + MER65A LTR ERV1 3 445 0 799 296 40 61 chr5 19427488 19427760 -183657772 + L2 LINE L2 3027 3303 -10 405 303 43 32 chr5 19429104 19429292 -183656240 - MIR3 SINE MIR -17 191 2 685 293 67 9 chr5 19430628 19430853 -183654679 + MIR SINE MIR 25 262 0 1169 231 111 0 chr5 19433720 19434027 -183651505 - MER58B DNA MER1_type 0 341 1 2254 118 0 0 chr5 19436825 19437130 -183648402 + AluSx SINE Alu 1 305 -7 21 36 0 0 chr5 19437221 19437249 -183648283 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr5 19437653 19437683 -183647849 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr5 19437868 19437897 -183647635 + AT_rich Low_complexity Low_complexity 1 29 0 2451 57 40 0 chr5 19438136 19438434 -183647098 + AluY SINE Alu 2 311 0 229 305 8 31 chr5 19438472 19438600 -183646932 + L1ME LINE L1 5663 5787 -334 237 143 71 0 chr5 19439937 19439979 -183645553 + MER3 DNA MER1_type 46 90 -119 * 719 216 122 0 chr5 19439942 19440123 -183645409 - MER3 DNA MER1_type -6 203 1 275 394 117 0 chr5 19440738 19440875 -183644657 + L2 LINE L2 3111 3263 -9 204 216 0 0 chr5 19442045 19442082 -183643450 + GA-rich Low_complexity Low_complexity 4 40 0 274 227 231 28 chr5 19442313 19442418 -183643114 - MIR SINE MIR -67 141 31 572 179 86 0 chr5 19442442 19442559 -183642973 - MER5A DNA MER1_type -2 187 61 180 163 0 0 chr5 19444638 19444681 -183640851 + CT-rich Low_complexity Low_complexity 1 43 0 1741 75 40 0 chr5 19444978 19445228 -183640304 + L1PA8 LINE L1 5921 6172 0 312 120 0 0 chr5 19446963 19447013 -183638519 + (TG)n Simple_repeat Simple_repeat 2 51 0 27 49 0 0 chr5 19447254 19447295 -183638237 + AT_rich Low_complexity Low_complexity 1 41 0 1099 217 4 17 chr5 19447322 19447552 -183637980 - MIR SINE MIR -35 227 1 2742 267 75 29 chr5 19449919 19450903 -183634629 + L1M4 LINE L1 3292 4339 -1807 2227 115 0 3 chr5 19450903 19451207 -183634325 + AluSx SINE Alu 1 303 -9 2742 267 75 29 chr5 19451207 19451377 -183634155 + L1M4 LINE L1 4339 4500 -1646 1178 57 0 0 chr5 19453663 19453803 -183631729 + AluY SINE Alu 152 291 -20 1798 208 129 15 chr5 19454717 19455188 -183630344 + LTR1B LTR ERV1 1 525 -301 518 279 29 0 chr5 19455236 19455376 -183630156 + LTR1B LTR ERV1 675 818 -8 573 257 92 39 chr5 19455974 19456460 -183629072 + MLT1G1 LTR MaLR 1 515 -40 276 227 15 0 chr5 19456567 19456633 -183628899 + MIR3 SINE MIR 126 192 -16 729 129 22 29 chr5 19456773 19456912 -183628620 + L1MB8 LINE L1 6035 6172 -6 208 139 0 0 chr5 19457119 19457155 -183628377 + (T)n Simple_repeat Simple_repeat 1 36 0 426 251 184 39 chr5 19457176 19457333 -183628199 + MIR SINE MIR 15 210 -52 261 0 0 0 chr5 19457333 19457362 -183628170 + (CA)n Simple_repeat Simple_repeat 2 30 0 426 251 184 39 chr5 19457362 19457411 -183628121 + MIR SINE MIR 210 251 -11 205 349 63 0 chr5 19458808 19458871 -183626661 + L2 LINE L2 3121 3187 -85 1202 205 23 5 chr5 19459027 19459055 -183626477 + MER20 DNA MER1_type 1 27 -192 180 0 0 0 chr5 19459055 19459075 -183626457 + (CCCTA)n Simple_repeat Simple_repeat 1 20 0 1202 205 23 5 chr5 19459075 19459261 -183626271 + MER20 DNA MER1_type 27 219 0 4975 126 34 68 chr5 19459962 19460817 -183624715 + LTR1B LTR ERV1 1 826 0 361 234 114 0 chr5 19461352 19461488 -183624044 + MIR SINE MIR 27 175 -62 342 0 0 0 chr5 19461520 19461558 -183623974 + (CA)n Simple_repeat Simple_repeat 2 39 0 3337 212 87 16 chr5 19461559 19462329 -183623203 + MER21B LTR ERV1 22 846 -17 30 45 0 0 chr5 19462627 19462671 -183622861 + AT_rich Low_complexity Low_complexity 1 44 0 343 193 121 0 chr5 19462984 19463067 -183622465 - MIR3 SINE MIR -39 169 77 2072 122 96 35 chr5 19463222 19463565 -183621967 + THE1B LTR MaLR 1 364 0 10467 91 7 94 chr5 19463565 19465295 -183620237 + THE1B-int LTR MaLR 1 1580 0 1532 169 156 29 chr5 19465295 19465609 -183619923 + THE1A LTR MaLR 1 354 -1 3078 112 73 36 chr5 19466221 19466782 -183618750 - L1MA4 LINE L1 -6 6294 5713 950 147 0 0 chr5 19467228 19467357 -183618175 - FLAM_C SINE Alu -4 129 1 2375 88 3 0 chr5 19468198 19468492 -183617040 - AluSq SINE Alu -16 297 3 785 188 0 0 chr5 19470176 19470309 -183615223 + FLAM_A SINE Alu 1 133 0 269 329 172 20 chr5 19470556 19470957 -183614575 - L2 LINE L2 -203 3069 2619 380 348 43 19 chr5 19470970 19471180 -183614352 - L2 LINE L2 -830 2484 2270 1762 112 14 22 chr5 19471454 19471732 -183613800 + AluSx SINE Alu 37 312 0 366 286 64 36 chr5 19472493 19472633 -183612899 - L2 LINE L2 -2 3311 3168 520 268 102 61 chr5 19472663 19472958 -183612574 + L2 LINE L2 2552 2858 -456 1271 205 266 7 chr5 19472958 19473360 -183612172 + MLT1H LTR MaLR 1 549 0 850 326 84 26 chr5 19473362 19473791 -183611741 + L2 LINE L2 2855 3308 -5 1898 168 32 69 chr5 19473955 19474360 -183611172 + MLT1B LTR MaLR 1 390 0 1117 276 59 10 chr5 19475642 19476048 -183609484 - Charlie7 DNA MER1_type -1926 686 261 379 0 0 38 chr5 19476442 19476495 -183609037 + (TG)n Simple_repeat Simple_repeat 2 52 0 341 362 7 7 chr5 19478692 19478833 -183606699 + LTR33 LTR ERVL 111 251 -270 201 133 0 0 chr5 19479604 19479634 -183605898 + (TG)n Simple_repeat Simple_repeat 1 30 0 294 29 0 0 chr5 19481106 19481141 -183604391 + (CA)n Simple_repeat Simple_repeat 2 36 0 502 307 68 6 chr5 19482412 19482588 -183602944 + MIR3 SINE MIR 7 193 -15 1364 230 168 59 chr5 19484049 19484544 -183600988 + MLT1H LTR MaLR 1 549 0 234 91 0 0 chr5 19484587 19484620 -183600912 + (CA)n Simple_repeat Simple_repeat 2 34 0 1356 139 86 0 chr5 19484658 19484867 -183600665 + MER30 DNA MER1_type 4 230 0 400 274 55 33 chr5 19484885 19485153 -183600379 + L1ME4a LINE L1 5290 5569 -775 806 210 160 70 chr5 19485177 19485504 -183600028 + MSTD LTR MaLR 1 386 -10 454 249 142 31 chr5 19485670 19485931 -183599601 + L1ME4a LINE L1 5748 6037 -84 198 0 0 0 chr5 19485931 19485953 -183599579 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 318 87 0 0 chr5 19485952 19485998 -183599534 + (CA)n Simple_repeat Simple_repeat 1 46 0 25 51 0 0 chr5 19486520 19486559 -183598973 + AT_rich Low_complexity Low_complexity 1 39 0 2189 145 14 19 chr5 19486672 19487038 -183598494 + THE1B LTR MaLR 1 364 0 10996 120 25 26 chr5 19487041 19488619 -183596913 + THE1B-int LTR MaLR 5 1580 0 2691 120 3 8 chr5 19488619 19488985 -183596547 + THE1B LTR MaLR 1 364 0 308 345 49 30 chr5 19488985 19489252 -183596280 + L1 LINE L1 2222 2493 -3653 445 289 88 63 chr5 19489427 19489825 -183595707 + L1 LINE L1 2740 3147 -2999 228 273 82 59 chr5 19490019 19490239 -183595293 + L1 LINE L1 3543 3767 -2379 215 163 82 0 chr5 19490422 19490471 -183595061 - MIR SINE MIR -1 261 209 318 232 121 10 chr5 19490755 19490854 -183594678 - L2 LINE L2 -14 3299 3190 216 0 0 0 chr5 19491262 19491286 -183594246 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 2139 76 0 129 chr5 19492186 19492542 -183592990 - AluSp SINE Alu -3 310 1 328 312 71 24 chr5 19493547 19493717 -183591815 + MIR SINE MIR 85 262 0 505 246 8 25 chr5 19494588 19494710 -183590822 + L1MC3 LINE L1 7131 7250 -535 1180 176 106 100 chr5 19494711 19495070 -183590462 + MLT1A1 LTR MaLR 1 361 -4 189 222 22 0 chr5 19496075 19496120 -183589412 + L3 LINE CR1 1516 1561 -16 212 143 0 0 chr5 19496448 19496483 -183589049 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 627 269 55 38 chr5 19496768 19497006 -183588526 - MIR SINE MIR -6 256 15 232 232 0 0 chr5 19498282 19498338 -183587194 + (CAGAGA)n Simple_repeat Simple_repeat 2 57 0 571 241 11 0 chr5 19498866 19499027 -183586505 + L1ME3 LINE L1 5460 5625 -537 447 290 0 26 chr5 19499044 19499199 -183586333 + MLT1H LTR MaLR 22 172 -377 1257 264 49 3 chr5 19499321 19499688 -183585844 + L1ME3 LINE L1 5778 6161 -1 438 282 26 48 chr5 19500702 19500929 -183584603 - L1ME LINE L1 -298 5823 5602 515 85 12 0 chr5 19501121 19501203 -183584329 + (TG)n Simple_repeat Simple_repeat 2 84 0 966 240 68 84 chr5 19501673 19502186 -183583346 + MLT1J LTR MaLR 5 509 -2 310 280 84 38 chr5 19502261 19502500 -183583032 + L1MC/D LINE L1 2583 2832 -3314 398 277 73 55 chr5 19502683 19502957 -183582575 + L1MC/D LINE L1 5317 5595 -2213 28 0 0 0 chr5 19503439 19503467 -183582065 + AT_rich Low_complexity Low_complexity 1 28 0 197 273 55 0 chr5 19503761 19503816 -183581716 + MIR SINE MIR 205 262 0 1827 162 55 0 chr5 19504666 19504994 -183580538 - MER7A DNA MER2_type -2 344 1 4954 176 80 3 chr5 19505087 19506719 -183578813 + L1MA4 LINE L1 4349 6120 -180 1546 72 36 18 chr5 19506721 19506943 -183578589 - L1PA10 LINE L1 -1 6167 5942 984 164 11 5 chr5 19506943 19507131 -183578401 + L1MA8 LINE L1 6096 6285 -6 268 207 0 0 chr5 19507146 19507204 -183578328 - Charlie1 DNA MER1_type -524 2237 2180 21 57 0 0 chr5 19507204 19507239 -183578293 + AT_rich Low_complexity Low_complexity 1 35 0 208 143 67 38 chr5 19508235 19508340 -183577192 + (TTATA)n Simple_repeat Simple_repeat 1 108 0 * 267 187 58 23 chr5 19508285 19508456 -183577076 + (TA)n Simple_repeat Simple_repeat 2 178 0 23 33 0 0 chr5 19508456 19508486 -183577046 + AT_rich Low_complexity Low_complexity 1 30 0 1238 56 0 12 chr5 19509069 19509231 -183576301 - L1PA5 LINE L1 -6 6148 5989 21 0 0 0 chr5 19510156 19510177 -183575355 + AT_rich Low_complexity Low_complexity 1 21 0 434 284 101 51 chr5 19510540 19510797 -183574735 + L2 LINE L2 3044 3313 0 268 308 117 25 chr5 19510951 19511071 -183574461 - MIR SINE MIR -130 132 2 582 220 24 6 chr5 19511576 19511744 -183573788 + L1M4 LINE L1 2213 2383 -3763 700 204 20 70 chr5 19511744 19511945 -183573587 + MLT1A1 LTR MaLR 1 191 -174 537 313 156 8 chr5 19512194 19512670 -183572862 + L2 LINE L2 2508 3065 -248 2350 181 145 124 chr5 19512713 19513295 -183572237 - L1MC3 LINE L1 -17 7768 7200 246 219 151 0 chr5 19513295 19513368 -183572164 - MLT1F1 LTR MaLR -448 119 36 2350 181 145 124 chr5 19513368 19513382 -183572150 - L1MC3 LINE L1 -585 7200 7188 284 56 0 0 chr5 19513382 19513418 -183572114 - tRNA-Gly-GGG tRNA tRNA -38 36 1 2350 181 145 124 chr5 19513418 19513875 -183571657 - L1MC3 LINE L1 -597 7188 6583 208 283 12 24 chr5 19514127 19514293 -183571239 + (TA)n Simple_repeat Simple_repeat 1 164 0 270 294 0 0 chr5 19514302 19514387 -183571145 - L1MC3 LINE L1 -1214 6571 6487 291 146 0 0 chr5 19514390 19514438 -183571094 - MLT2D LTR ERVL 0 414 367 236 244 0 0 chr5 19514438 19514483 -183571049 + (TG)n Simple_repeat Simple_repeat 1 45 0 503 177 0 0 chr5 19514575 19514654 -183570878 - Tigger5 DNA MER2_type -2244 79 1 198 0 0 0 chr5 19514663 19514685 -183570847 + (TG)n Simple_repeat Simple_repeat 2 23 0 1122 232 37 92 chr5 19514685 19515173 -183570359 - MLT2B1 LTR ERVL -59 461 1 348 285 66 40 chr5 19515228 19515379 -183570153 + L2 LINE L2 3158 3312 -1 198 0 0 0 chr5 19518596 19518618 -183566914 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1327 13 0 0 chr5 19518618 19518769 -183566763 - L1PA2 LINE L1 -13 6142 5992 1010 227 106 11 chr5 19518948 19519230 -183566302 + MER58B DNA MER1_type 32 340 -1 594 331 6 0 chr5 19521277 19521449 -183564083 - MIR SINE MIR -6 256 84 790 275 140 25 chr5 19522358 19522802 -183562730 + MLT1G1 LTR MaLR 90 584 -11 861 254 37 18 chr5 19522939 19523156 -183562376 + MIR SINE MIR 8 228 -34 305 271 170 90 chr5 19526460 19526964 -183558568 + L1M2 LINE L1 525 1022 -5827 210 37 0 0 chr5 19526967 19526994 -183558538 + (CGG)n Simple_repeat Simple_repeat 1 27 0 329 313 104 65 chr5 19527184 19527774 -183557758 - L1M2 LINE L1 -5595 1254 790 221 313 30 0 chr5 19528425 19528492 -183557040 - MIR SINE MIR -120 142 74 921 289 81 41 chr5 19529716 19530205 -183555327 + L2 LINE L2 2421 2927 -345 2209 97 0 35 chr5 19530269 19530579 -183554953 + AluSq SINE Alu 1 299 -14 217 380 36 36 chr5 19531522 19531659 -183553873 + L2 LINE L2 3136 3272 0 228 290 32 0 chr5 19532769 19532831 -183552701 - L2 LINE L2 -224 3048 2985 1195 171 0 5 chr5 19532895 19533094 -183552438 + AluJb SINE Alu 107 304 -8 297 319 7 44 chr5 19533870 19534005 -183551527 + L2 LINE L2 3183 3312 -1 619 273 66 0 chr5 19534096 19534338 -183551194 - MIR SINE MIR 0 262 5 628 109 10 0 chr5 19534455 19534556 -183550976 + L1MB4 LINE L1 6077 6178 -2 226 211 28 70 chr5 19534981 19535052 -183550480 + L2 LINE L2 3201 3268 -4 2194 95 3 10 chr5 19535482 19535778 -183549754 + AluSx SINE Alu 5 298 -14 3271 28 0 3 chr5 19536536 19536924 -183548608 + L1PA5 LINE L1 5756 6142 -12 290 291 39 0 chr5 19536939 19537071 -183548461 - MER39 LTR ERV1 -320 387 115 233 174 0 0 chr5 19537098 19537144 -183548388 - MER39 LTR ERV1 -661 46 1 477 165 72 0 chr5 19537312 19537409 -183548123 + MER58C DNA MER1_type 112 215 0 708 139 23 8 chr5 19538018 19538147 -183547385 + MER20 DNA MER1_type 30 160 -59 202 293 82 48 chr5 19538773 19538981 -183546551 - L2 LINE L2 -1284 2030 1816 2250 109 0 0 chr5 19539024 19539317 -183546215 + AluSx SINE Alu 1 293 -19 2061 197 24 74 chr5 19539397 19539691 -183545841 - MER21B LTR ERV1 -3 860 553 1735 145 19 0 chr5 19539691 19539953 -183545579 + AluJb SINE Alu 2 268 -44 2061 197 24 74 chr5 19539953 19539968 -183545564 - MER21B LTR ERV1 -310 553 539 207 0 0 0 chr5 19539968 19539991 -183545541 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2061 197 24 74 chr5 19539991 19540234 -183545298 - MER21B LTR ERV1 -324 539 335 6162 91 2 0 chr5 19540234 19541076 -183544456 + THE1B-int LTR MaLR 737 1580 0 2103 141 30 25 chr5 19541076 19541438 -183544094 + THE1B LTR MaLR 1 364 0 269 337 0 12 chr5 19541929 19542015 -183543517 + L2 LINE L2 3186 3270 -2 1450 218 22 14 chr5 19542157 19542515 -183543017 - MLT1H1 LTR MaLR 0 555 195 569 255 6 19 chr5 19542515 19542676 -183542856 + MER20 DNA MER1_type 3 161 -58 248 253 149 0 chr5 19542719 19542806 -183542726 - MLT1H1 LTR MaLR -351 204 105 234 293 20 20 chr5 19542819 19542918 -183542614 - MLT1H LTR MaLR -389 160 62 392 276 32 19 chr5 19543596 19543752 -183541780 + Charlie8 DNA MER1_type 62 219 -2198 249 119 0 0 chr5 19543857 19543899 -183541633 + (TAA)n Simple_repeat Simple_repeat 2 43 0 323 297 77 46 chr5 19544140 19544335 -183541197 + MLT1H LTR MaLR 119 319 -230 314 236 9 27 chr5 19544480 19544590 -183540942 - L1MC5 LINE L1 -48 7913 7806 1778 169 7 0 chr5 19545105 19545395 -183540137 - AluSx SINE Alu -20 292 1 1178 239 84 22 chr5 19545467 19545872 -183539660 - L1MC/D LINE L1 -2000 5808 5379 294 183 37 0 chr5 19545872 19545954 -183539578 + (TA)n Simple_repeat Simple_repeat 2 86 0 198 71 0 0 chr5 19545955 19545983 -183539549 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 648 222 86 56 chr5 19545987 19546149 -183539383 - AluJb SINE Alu -23 289 123 1272 285 87 25 chr5 19546253 19546737 -183538795 - MER34 LTR ERV1 0 542 29 600 247 0 20 chr5 19547650 19547796 -183537736 - LTR67 LTR ERVL -5 552 410 1325 262 91 29 chr5 19548088 19548572 -183536960 + MLT1E LTR MaLR 75 588 -5 189 121 0 0 chr5 19548653 19548686 -183536846 + (A)n Simple_repeat Simple_repeat 1 33 0 417 110 55 0 chr5 19549322 19549395 -183536137 - L1M4 LINE L1 -3172 2974 2898 448 276 97 21 chr5 19549628 19549773 -183535759 - MIR SINE MIR -70 192 37 2199 107 48 46 chr5 19550480 19550853 -183534679 - THE1C LTR MaLR -1 374 1 21 82 0 0 chr5 19550945 19550994 -183534538 + AT_rich Low_complexity Low_complexity 1 49 0 34 55 0 0 chr5 19551083 19551138 -183534394 + AT_rich Low_complexity Low_complexity 1 55 0 22616 160 8 10 chr5 19551726 19556653 -183528879 - L1PA11 LINE L1 -2 7610 2695 1940 122 131 24 chr5 19556657 19556986 -183528546 + THE1B LTR MaLR 1 364 0 12070 89 4 0 chr5 19556986 19558542 -183526990 + THE1B-int LTR MaLR 1 1562 -18 4782 210 15 41 chr5 19558549 19559579 -183525953 - L1PA11 LINE L1 -6576 1005 3 497 217 42 28 chr5 19559614 19559757 -183525775 - L1MA9 LINE L1 -25 6287 6143 1015 148 0 13 chr5 19559763 19559918 -183525614 + AluJb SINE Alu 142 294 -18 1411 172 96 98 chr5 19560221 19560587 -183524945 + MLT1A1 LTR MaLR 1 365 0 1691 190 133 12 chr5 19560593 19560993 -183524539 + MER39 LTR ERV1 260 707 0 298 295 78 62 chr5 19561003 19561247 -183524285 + L1MC/D LINE L1 5394 5641 -2167 810 236 39 0 chr5 19561379 19561561 -183523971 + AluJo SINE Alu 120 308 -4 1149 125 20 50 chr5 19562374 19562574 -183522958 - MER31A LTR ERV1 -291 194 1 202 349 75 0 chr5 19563126 19563232 -183522300 - L2 LINE L2 -827 2487 2374 2852 220 9 5 chr5 19563830 19564472 -183521060 - L1 LINE L1 -2890 3256 2612 233 226 38 9 chr5 19564709 19564815 -183520717 + (TA)n Simple_repeat Simple_repeat 1 109 0 1085 190 7 108 chr5 19565700 19565798 -183519734 - MLT1A2 LTR MaLR -109 265 159 333 0 0 0 chr5 19565798 19565835 -183519697 + (CA)n Simple_repeat Simple_repeat 2 38 0 1085 190 7 108 chr5 19565835 19566031 -183519501 - MLT1A2 LTR MaLR -215 159 1 218 300 121 0 chr5 19566129 19566234 -183519298 + MIR SINE MIR 45 160 -69 1199 80 0 0 chr5 19566246 19566396 -183519136 + AluY SINE Alu 160 309 -2 287 287 21 21 chr5 19566407 19566501 -183519031 + MIR SINE MIR 153 246 -16 260 333 17 34 chr5 19569238 19569415 -183516117 - L1ME LINE L1 -349 5772 5599 653 305 5 15 chr5 19569803 19570006 -183515526 + MIR SINE MIR 11 211 -51 242 290 16 0 chr5 19570056 19570118 -183515414 - L2 LINE L2 -12 3301 3239 242 270 16 16 chr5 19570183 19570246 -183515286 + L2 LINE L2 3210 3272 0 180 0 0 0 chr5 19572811 19572831 -183512701 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 222 37 0 0 chr5 19572830 19572857 -183512675 + (CA)n Simple_repeat Simple_repeat 1 27 0 1840 138 76 3 chr5 19572945 19573236 -183512296 + AluSx SINE Alu 1 312 0 2156 123 0 3 chr5 19574167 19574469 -183511063 - AluSx SINE Alu -7 305 5 204 118 29 0 chr5 19574716 19574750 -183510782 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 1836 130 7 43 chr5 19574751 19575051 -183510481 - AluSx SINE Alu -23 289 1 204 172 31 31 chr5 19575225 19575289 -183510243 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 2300 105 0 7 chr5 19575624 19575929 -183509603 + AluSg SINE Alu 1 303 -7 1827 121 37 7 chr5 19576043 19576315 -183509217 - AluSq SINE Alu -6 307 28 184 292 104 97 chr5 19577179 19577467 -183508065 - L2 LINE L2 -56 3216 2927 2437 99 79 15 chr5 19577494 19577836 -183507696 + THE1B LTR MaLR 1 364 0 253 333 0 0 chr5 19577992 19578070 -183507462 - L2 LINE L2 -990 2324 2247 513 256 78 57 chr5 19578133 19578363 -183507169 - L2 LINE L2 -1240 2074 1840 245 313 88 31 chr5 19578529 19578721 -183506811 - L2 LINE L2 -1723 1591 1389 693 309 82 10 chr5 19578723 19579014 -183506518 + L2 LINE L2 2326 2637 -677 1484 231 99 12 chr5 19579022 19579447 -183506085 + MLT1C LTR MaLR 6 467 0 768 266 171 37 chr5 19579450 19580038 -183505494 + L2 LINE L2 2650 3313 0 193 296 0 0 chr5 19580395 19580439 -183505093 + MIR3 SINE MIR 148 191 -17 252 213 0 0 chr5 19580463 19580524 -183505008 + CT-rich Low_complexity Low_complexity 1 61 0 2260 205 50 8 chr5 19581663 19582145 -183503387 - MLT1D LTR MaLR -1 504 3 489 161 0 0 chr5 19582770 19582857 -183502675 + (TA)n Simple_repeat Simple_repeat 1 87 0 2018 108 114 6 chr5 19582857 19583191 -183502341 + MSTA LTR MaLR 59 428 0 641 351 130 11 chr5 19583225 19583687 -183501845 + L2 LINE L2 2371 2887 -427 1438 218 55 72 chr5 19584423 19584803 -183500729 - L1ME2 LINE L1 -3 6159 5787 2497 58 0 0 chr5 19584803 19585098 -183500434 + AluY SINE Alu 1 295 -16 1438 218 55 72 chr5 19585098 19585204 -183500328 - L1ME2 LINE L1 -375 5787 5681 455 215 51 0 chr5 19585366 19585524 -183500008 - L1ME2 LINE L1 -1679 4467 4302 1177 243 31 50 chr5 19585631 19585682 -183499850 - L1ME2 LINE L1 -3015 3131 3081 2368 97 0 3 chr5 19585682 19585992 -183499540 - AluSq SINE Alu -4 309 1 1177 243 31 50 chr5 19585992 19586040 -183499492 - L1ME2 LINE L1 -3065 3081 3034 2090 114 7 16 chr5 19586040 19586347 -183499185 - AluJb SINE Alu -8 304 1 1177 243 31 50 chr5 19586347 19586670 -183498862 - L1ME2 LINE L1 -3112 3034 2716 985 246 191 18 chr5 19586672 19587099 -183498433 - MLT1H LTR MaLR -1 548 9 495 263 84 19 chr5 19587246 19587459 -183498073 - L1ME2 LINE L1 -3607 2539 2313 426 157 48 0 chr5 19587497 19587580 -183497952 - MER93b LTR ERV1 -111 262 176 939 198 6 0 chr5 19587602 19587759 -183497773 + MER93b LTR ERV1 1 158 -215 529 170 50 10 chr5 19587764 19587864 -183497668 + MER93b LTR ERV1 270 373 0 2090 137 0 3 chr5 19587945 19588252 -183497280 - AluSx SINE Alu -6 306 1 475 220 0 0 chr5 19588322 19588413 -183497119 - MLT1D LTR MaLR -414 91 1 1359 109 139 0 chr5 19588720 19588922 -183496610 + MER30 DNA MER1_type 1 230 0 1023 278 57 44 chr5 19590271 19590608 -183494924 + MER115 DNA AcHobo 1 332 -361 2688 108 17 8 chr5 19590608 19590969 -183494563 - THE1B LTR MaLR 0 364 1 1023 278 57 44 chr5 19590969 19591262 -183494270 + MER115 DNA AcHobo 332 693 0 260 270 16 0 chr5 19591371 19591434 -183494098 + MIR SINE MIR 40 103 -159 1920 274 82 9 chr5 19591522 19592069 -183493463 - MLT1G1 LTR MaLR -2 593 7 299 271 99 26 chr5 19592717 19592868 -183492664 + MIR SINE MIR 101 262 0 2083 129 7 7 chr5 19596345 19596640 -183488892 + AluSx SINE Alu 3 297 -15 292 276 67 19 chr5 19596646 19596751 -183488781 - L2 LINE L2 0 3313 3204 683 309 39 4 chr5 19597052 19597282 -183488250 + MIR SINE MIR 20 257 -5 2983 110 20 22 chr5 19597340 19597839 -183487693 + L1MA4 LINE L1 5411 5908 -395 348 24 0 0 chr5 19598267 19598308 -183487224 + (CA)n Simple_repeat Simple_repeat 1 41 0 2063 151 29 0 chr5 19598308 19598685 -183486847 + L1MA4 LINE L1 5913 6300 0 294 189 18 41 chr5 19599495 19599664 -183485868 + (TCTA)n Simple_repeat Simple_repeat 4 168 0 457 319 83 6 chr5 19599824 19599993 -183485539 - MIR SINE MIR -15 247 66 24 53 0 0 chr5 19600043 19600081 -183485451 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr5 19600471 19600496 -183485036 + AT_rich Low_complexity Low_complexity 1 25 0 250 125 100 113 chr5 19600726 19600806 -183484726 + MIR SINE MIR 67 145 -63 21 36 0 0 chr5 19600883 19600911 -183484621 + AT_rich Low_complexity Low_complexity 1 28 0 266 273 71 30 chr5 19601224 19601323 -183484209 - L2 LINE L2 -3 3269 3167 225 362 38 0 chr5 19601746 19601851 -183483681 + MIR SINE MIR 102 210 -52 227 385 19 10 chr5 19603035 19603139 -183482393 + MIR3 SINE MIR 52 156 -52 418 352 6 6 chr5 19603149 19603328 -183482204 - MER117 DNA MER1_type -18 179 1 1767 146 42 74 chr5 19604408 19604811 -183480721 - MLT1B LTR MaLR 0 390 1 334 207 155 78 chr5 19604836 19604952 -183480580 - MIR SINE MIR -46 216 92 577 159 0 0 chr5 19605010 19605098 -183480434 + 5S rRNA rRNA 2 89 -32 2286 109 0 6 chr5 19605279 19605591 -183479941 - AluSq SINE Alu -3 310 1 180 224 96 88 chr5 19605816 19605941 -183479591 - MIR SINE MIR -85 177 52 844 212 37 5 chr5 19607453 19607642 -183477890 - MSTD LTR MaLR -2 394 200 814 113 0 43 chr5 19607668 19607682 -183477850 - MSTD LTR MaLR -261 135 122 2208 107 41 39 chr5 19607682 19608045 -183477487 + THE1B LTR MaLR 1 364 0 814 113 0 43 chr5 19608045 19608171 -183477361 - MSTD LTR MaLR -274 122 1 204 290 20 70 chr5 19608259 19608359 -183477173 - MIR SINE MIR -6 256 162 257 200 0 18 chr5 19609816 19609871 -183475661 + MIR SINE MIR 20 73 -189 2285 88 0 7 chr5 19610348 19610642 -183474890 - AluSc SINE Alu -17 292 1 728 224 141 21 chr5 19610725 19610917 -183474615 - MIR SINE MIR -43 219 5 2379 170 73 20 chr5 19611760 19612254 -183473278 + MLT2B1 LTR ERVL 1 520 0 214 266 0 47 chr5 19612976 19613040 -183472492 - L3 LINE CR1 -7 1570 1510 243 128 0 0 chr5 19613430 19613469 -183472063 - MSTB LTR MaLR 0 428 390 2337 104 3 0 chr5 19613469 19613800 -183471732 + AluSg SINE Alu 1 332 0 1760 168 29 70 chr5 19613800 19614216 -183471316 - MSTB LTR MaLR -27 399 1 582 310 27 11 chr5 19615930 19616117 -183469415 - MIR SINE MIR -50 212 23 343 244 49 0 chr5 19616851 19616974 -183468558 + MLT1D-int LTR MaLR 1243 1371 0 1414 249 70 33 chr5 19616974 19617461 -183468071 + MLT1D LTR MaLR 1 505 0 430 285 151 16 chr5 19617461 19617766 -183467766 + MLT1J1 LTR MaLR 101 446 0 614 104 10 0 chr5 19618075 19618171 -183467361 + (TCCA)n Simple_repeat Simple_repeat 1 97 0 241 231 0 0 chr5 19618171 19618223 -183467309 + (CCTA)n Simple_repeat Simple_repeat 1 52 0 229 204 0 0 chr5 19618264 19618313 -183467219 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 292 335 48 18 chr5 19618501 19618668 -183466864 - L2 LINE L2 -289 2983 2812 25 0 0 0 chr5 19618745 19618770 -183466762 + AT_rich Low_complexity Low_complexity 1 25 0 580 253 136 68 chr5 19621461 19621844 -183463688 - LTR67 LTR ERVL -39 518 110 279 0 0 0 chr5 19621955 19621986 -183463546 + (GA)n Simple_repeat Simple_repeat 2 32 0 181 210 272 37 chr5 19621987 19622068 -183463464 + MIR3 SINE MIR 103 202 -6 547 305 26 26 chr5 19623604 19623873 -183461659 + MARNA DNA Mariner 299 567 -19 226 347 104 7 chr5 19623877 19624021 -183461511 - L3b LINE CR1 -118 1465 1308 403 296 85 40 chr5 19624035 19624211 -183461321 - MIR SINE MIR -71 191 8 13533 146 48 6 chr5 19624563 19626765 -183458767 + Tigger1 DNA MER2_type 1 2306 -112 2289 96 7 0 chr5 19626765 19627066 -183458466 - AluY SINE Alu -8 303 1 13533 146 48 6 chr5 19627066 19627184 -183458348 + Tigger1 DNA MER2_type 2306 2418 0 2187 206 52 74 chr5 19627764 19628396 -183457136 - MLT1E2 LTR MaLR -8 618 1 359 356 42 6 chr5 19628884 19629065 -183456467 + MIR SINE MIR 17 204 -58 280 350 50 0 chr5 19629090 19629210 -183456322 - L2 LINE L2 -6 3307 3182 384 178 0 0 chr5 19629285 19629358 -183456174 + CT-rich Low_complexity Low_complexity 2 74 0 260 216 0 0 chr5 19631366 19631417 -183454115 + L2 LINE L2 3262 3312 -1 1789 181 3 0 chr5 19631479 19631777 -183453755 + AluSx SINE Alu 1 299 -13 448 360 42 21 chr5 19632259 19632448 -183453084 - MER91A DNA MER1_type -3 193 1 448 297 80 42 chr5 19633122 19633361 -183452171 + MIR SINE MIR 15 262 0 680 295 135 3 chr5 19634848 19634902 -183450630 - LTR16A LTR ERVL 0 450 404 216 23 0 68 chr5 19634902 19634946 -183450586 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 680 295 135 3 chr5 19634946 19635203 -183450329 - LTR16A LTR ERVL -46 404 98 4699 167 41 4 chr5 19635676 19636597 -183448935 + L1MA4 LINE L1 5345 6299 -1 1269 243 6 9 chr5 19636588 19636930 -183448602 + L1MA9 LINE L1 5934 6274 -38 * 2177 128 0 0 chr5 19636941 19637238 -183448294 - AluSc SINE Alu -12 297 1 542 271 42 12 chr5 19637254 19637420 -183448112 + MLT1A2 LTR MaLR 156 326 -48 180 0 0 0 chr5 19637421 19637441 -183448091 + (A)n Simple_repeat Simple_repeat 1 20 0 518 301 9 32 chr5 19638129 19638345 -183447187 - MIR SINE MIR 0 262 52 219 346 45 45 chr5 19638657 19638813 -183446719 + L3 LINE CR1 137 292 -1285 335 360 42 78 chr5 19639082 19639365 -183446167 + L2 LINE L2 2995 3267 -5 190 263 229 8 chr5 19639334 19639452 -183446080 + L3 LINE CR1 957 1100 -477 * 201 276 9 148 chr5 19639613 19639830 -183445702 + L3 LINE CR1 1243 1429 -148 216 308 103 13 chr5 19641461 19641539 -183443993 + L2 LINE L2 3188 3272 0 21 0 0 0 chr5 19642364 19642385 -183443147 + AT_rich Low_complexity Low_complexity 1 21 0 980 186 64 0 chr5 19642451 19642655 -183442877 - MER20 DNA MER1_type 0 219 3 190 233 0 0 chr5 19643738 19643781 -183441751 - L2 LINE L2 0 3313 3271 282 260 73 31 chr5 19644087 19644183 -183441349 - MER5B DNA MER1_type -78 100 1 597 195 9 9 chr5 19644191 19644304 -183441228 - MER5B DNA MER1_type 0 178 66 533 261 28 28 chr5 19644333 19644475 -183441057 + MER5B DNA MER1_type 1 142 -36 185 277 134 45 chr5 19644884 19644996 -183440536 + MIR3 SINE MIR 1 122 -86 326 261 104 0 chr5 19645739 19645854 -183439678 - MER63 DNA MER1_type -309 753 1 9422 216 46 27 chr5 19645932 19649727 -183435805 + L1MA9 LINE L1 971 4690 -1858 1775 116 4 0 chr5 19649727 19649969 -183435563 + AluSx SINE Alu 37 279 -33 9422 216 46 27 chr5 19649969 19651035 -183434497 + L1MA9 LINE L1 4690 6058 -490 261 0 0 0 chr5 19651035 19651064 -183434468 + (CA)n Simple_repeat Simple_repeat 2 30 0 9422 216 46 27 chr5 19651064 19651560 -183433972 + L1MA9 LINE L1 6058 6543 -5 2242 78 51 3 chr5 19652472 19652768 -183432764 + AluY SINE Alu 1 310 -1 226 216 0 0 chr5 19653754 19653805 -183431727 - L1ME4a LINE L1 -69 6052 6002 258 239 15 112 chr5 19653827 19653961 -183431571 - MLT1H LTR MaLR -1 548 428 201 204 0 20 chr5 19654265 19654314 -183431218 + (TA)n Simple_repeat Simple_repeat 1 48 0 314 222 33 22 chr5 19654315 19654405 -183431127 + L1MC4 LINE L1 6613 6703 -1339 300 289 52 0 chr5 19654416 19654513 -183431019 + MIR SINE MIR 151 252 -10 1614 176 35 26 chr5 19654519 19654859 -183430673 + MLT1A2 LTR MaLR 1 343 -31 444 264 111 57 chr5 19654894 19655138 -183430394 - L1ME4a LINE L1 -248 5873 5600 575 250 9 0 chr5 19655423 19655539 -183429993 - FLAM_A SINE Alu -16 117 1 243 281 75 38 chr5 19656011 19656171 -183429361 - HAL1 LINE L1 -715 1792 1627 210 250 21 0 chr5 19656418 19656466 -183429066 + CT-rich Low_complexity Low_complexity 4 52 0 289 304 29 74 chr5 19656572 19656815 -183428717 - MLT1J LTR MaLR -52 459 228 23 0 0 0 chr5 19657711 19657734 -183427798 + AT_rich Low_complexity Low_complexity 1 23 0 189 213 0 0 chr5 19658375 19658422 -183427110 + GA-rich Low_complexity Low_complexity 2 48 0 2238 239 33 26 chr5 19658685 19659332 -183426200 - L1MC4a LINE L1 -146 7653 6992 180 0 0 0 chr5 19659332 19659352 -183426180 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 2238 239 33 26 chr5 19659352 19659687 -183425845 - L1MC4a LINE L1 -807 6992 6661 1004 217 8 16 chr5 19659701 19659954 -183425578 - L1M4 LINE L1 -1366 5016 4766 2782 190 9 57 chr5 19660972 19661467 -183424065 - L1MB3 LINE L1 -2 6181 5728 2240 112 0 0 chr5 19661467 19661770 -183423762 + AluSx SINE Alu 6 308 -4 2782 190 9 57 chr5 19661770 19661975 -183423557 - L1MB3 LINE L1 -455 5728 5515 * 6025 159 30 30 chr5 19661973 19663590 -183421942 - L1M4 LINE L1 -3427 2955 1332 842 243 28 0 chr5 19663581 19663795 -183421737 + L1ME LINE L1 5496 5715 -451 * 233 213 0 43 chr5 19663938 19663985 -183421547 - L2 LINE L2 -82 3190 3146 228 260 55 27 chr5 19664158 19664231 -183421301 + MER5C DNA MER1_type 20 94 -230 23 33 0 0 chr5 19664297 19664327 -183421205 + AT_rich Low_complexity Low_complexity 1 30 0 452 156 67 22 chr5 19664336 19664471 -183421061 + L1MC4 LINE L1 7902 8042 0 21 0 0 0 chr5 19664518 19664539 -183420993 + AT_rich Low_complexity Low_complexity 1 21 0 1586 248 42 48 chr5 19664594 19665094 -183420438 - MLT1D LTR MaLR -5 500 4 232 404 57 10 chr5 19665132 19665429 -183420103 - L2 LINE L2 -452 2862 2552 314 198 49 35 chr5 19665584 19665712 -183419820 - MLT2F LTR ERVL -9 654 336 484 126 76 0 chr5 19665828 19665935 -183419597 - MLT1E3 LTR MaLR -446 208 46 376 272 0 76 chr5 19665934 19666092 -183419440 - MLT2F LTR ERVL -517 146 1 * 356 186 14 14 chr5 19667939 19668079 -183417453 + GA-rich Low_complexity Low_complexity 1 140 0 417 318 19 0 chr5 19668961 19669115 -183416417 + MLT2E LTR ERVL 3 159 -469 357 189 24 94 chr5 19669217 19669293 -183416239 + MLT2E LTR ERVL 504 570 -58 1990 127 3 0 chr5 19669293 19669606 -183415926 + AluSx SINE Alu 1 314 0 357 189 24 94 chr5 19669606 19669655 -183415877 + MLT2E LTR ERVL 570 621 -7 213 284 45 0 chr5 19669827 19669894 -183415638 - L2 LINE L2 -1 3312 3243 430 269 8 0 chr5 19669908 19670027 -183415505 + MER94 DNA DNA 2 121 -13 455 233 127 57 chr5 19670550 19670778 -183414754 + MIR SINE MIR 18 261 -1 1954 102 44 4 chr5 19672398 19672705 -183412827 - AluSx SINE Alu 0 318 1 549 270 138 50 chr5 19673204 19673491 -183412041 + LTR33 LTR ERVL 100 419 -102 1300 181 33 109 chr5 19673491 19673884 -183411648 - MLT1A1 LTR MaLR 0 365 3 549 270 138 50 chr5 19673884 19673914 -183411618 + LTR33 LTR ERVL 419 445 -76 7325 156 15 12 chr5 19673914 19674942 -183410590 - Tigger1 DNA MER2_type 0 2418 1395 2248 111 3 3 chr5 19674942 19675240 -183410292 + AluSq SINE Alu 1 298 -15 180 0 0 0 chr5 19675243 19675263 -183410269 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7325 156 15 12 chr5 19675263 19676585 -183408947 - Tigger1 DNA MER2_type -1024 1394 1 1306 168 54 19 chr5 19676609 19676937 -183408595 + MLT2C1 LTR ERVL 4 424 -37 311 287 17 17 chr5 19676937 19677052 -183408480 + (TATATG)n Simple_repeat Simple_repeat 3 117 0 2047 233 25 18 chr5 19677053 19677563 -183407969 - MLT2B3 LTR ERVL -40 514 1 790 210 74 0 chr5 19679206 19679382 -183406150 + MER5A DNA MER1_type 1 189 0 234 239 156 18 chr5 19679528 19679637 -183405895 - MIR SINE MIR -99 163 40 1240 200 42 93 chr5 19680146 19680531 -183405001 + MLT1A1 LTR MaLR 1 365 0 192 77 0 0 chr5 19681198 19681224 -183404308 + (CAGAA)n Simple_repeat Simple_repeat 1 26 0 423 230 52 63 chr5 19682257 19682431 -183403101 - MER34B LTR ERV1 0 565 394 354 194 0 0 chr5 19682702 19682769 -183402763 - MER34 LTR ERV1 -473 69 3 306 268 12 20 chr5 19682780 19682896 -183402636 - MIR SINE MIR -78 130 19 2107 173 10 18 chr5 19684279 19684672 -183400860 - MLT1B LTR MaLR 0 390 1 285 75 0 0 chr5 19684837 19684877 -183400655 + (ATG)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr5 19685139 19685160 -183400372 + AT_rich Low_complexity Low_complexity 1 21 0 2161 108 0 26 chr5 19685393 19685698 -183399834 - AluSq SINE Alu -16 297 1 268 243 14 27 chr5 19685990 19686064 -183399468 + CT-rich Low_complexity Low_complexity 6 78 0 574 224 17 103 chr5 19686160 19686392 -183399140 + MLT1F1 LTR MaLR 7 218 -324 * 855 219 85 0 chr5 19686379 19686603 -183398929 + MLT1F1 LTR MaLR 323 565 -2 681 311 55 21 chr5 19686655 19686944 -183398588 + L2 LINE L2 3014 3312 -1 1666 245 66 32 chr5 19687463 19687986 -183397546 + L2 LINE L2 2451 3000 -313 2821 74 3 11 chr5 19687986 19688363 -183397169 + THE1C LTR MaLR 2 375 0 1666 245 66 32 chr5 19688363 19688526 -183397006 + L2 LINE L2 3000 3156 -157 213 244 0 0 chr5 19688552 19688597 -183396935 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 259 111 0 0 chr5 19688704 19688740 -183396792 - MER5A DNA MER1_type -150 39 4 914 176 11 11 chr5 19688751 19688938 -183396594 - MER3 DNA MER1_type -5 204 18 1021 166 0 6 chr5 19688953 19689134 -183396398 - MER3 DNA MER1_type -24 185 6 384 233 42 33 chr5 19689148 19689268 -183396264 + L2 LINE L2 3192 3312 -1 264 341 159 16 chr5 19689272 19689398 -183396134 + L2 LINE L2 3126 3269 -3 299 65 22 0 chr5 19690521 19690567 -183394965 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 2148 131 3 0 chr5 19692657 19692962 -183392570 + AluSx SINE Alu 1 306 -6 2132 137 0 13 chr5 19693049 19693364 -183392168 + AluSx SINE Alu 1 311 -1 1466 208 0 14 chr5 19695082 19695371 -183390161 + AluJb SINE Alu 2 286 -26 504 0 0 0 chr5 19695371 19695427 -183390105 + (TA)n Simple_repeat Simple_repeat 2 57 0 280 309 24 0 chr5 19695741 19695825 -183389707 + L2 LINE L2 3228 3313 0 192 296 182 0 chr5 19695898 19695986 -183389546 + L2 LINE L2 3201 3304 -9 2274 97 3 3 chr5 19695988 19696287 -183389245 - AluSc SINE Alu -9 300 2 488 79 53 0 chr5 19697832 19697908 -183387624 - MADE1 DNA Mariner 0 80 1 746 253 18 27 chr5 19698021 19698242 -183387290 + MER46C DNA MER2_type 19 237 -101 272 191 95 0 chr5 19700480 19700543 -183384989 - MIR SINE MIR -79 129 61 191 326 59 30 chr5 19702668 19702803 -183382729 + L2 LINE L2 2603 2741 -573 2777 152 57 50 chr5 19703028 19703648 -183381884 + L1MB2 LINE L1 5544 6167 -4 250 224 0 0 chr5 19705106 19705155 -183380377 + L1ME4a LINE L1 5967 6015 -106 296 175 16 0 chr5 19705226 19705289 -183380243 + (TA)n Simple_repeat Simple_repeat 2 65 0 319 24 0 0 chr5 19755934 19755975 -183329557 - L1PB1 LINE L1 -254 5897 5857 1707 73 30 0 chr5 19755975 19756198 -183329334 + L1PB1 LINE L1 5911 6151 0 1405 176 20 26 chr5 19756204 19756329 -183329203 + L1M2 LINE L1 5177 5301 -990 1059 139 0 0 chr5 19756329 19756509 -183329023 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1405 176 20 26 chr5 19756509 19756788 -183328744 + L1M2 LINE L1 5301 5573 -718 2139 151 64 25 chr5 19757334 19757738 -183327794 + MSTA LTR MaLR 5 424 -4 22 0 0 0 chr5 19758323 19758345 -183327187 + AT_rich Low_complexity Low_complexity 1 22 0 339 271 17 25 chr5 19758477 19758595 -183326937 + L2 LINE L2 3192 3308 -5 254 188 16 16 chr5 19759322 19759386 -183326146 - MER58B DNA MER1_type 0 341 278 836 233 30 34 chr5 19759390 19759716 -183325816 + MER92B LTR ERV1 94 634 -2 * 1508 209 103 2 chr5 19759716 19760115 -183325417 + Charlie1 DNA MER1_type 576 1015 -1746 323 186 76 25 chr5 19760114 19760232 -183325300 + Charlie1 DNA MER1_type 2638 2761 0 * 242 232 0 0 chr5 19760446 19760507 -183325025 + (TTA)n Simple_repeat Simple_repeat 1 61 0 395 267 0 27 chr5 19760641 19760787 -183324745 + T-rich Low_complexity Low_complexity 4 145 0 1724 190 128 54 chr5 19761784 19762427 -183323105 - LTR1B LTR ERV1 0 826 137 358 288 15 17 chr5 19762543 19762700 -183322832 + L1ME1 LINE L1 5455 5590 -572 416 248 16 36 chr5 19762700 19763315 -183322217 + (TATATG)n Simple_repeat Simple_repeat 1 602 0 468 245 0 33 chr5 19763334 19763518 -183322014 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 310 268 0 62 chr5 19763542 19763639 -183321893 + L1MC4 LINE L1 6615 6705 -1337 306 337 0 0 chr5 19763582 19763671 -183321861 - L1MC4 LINE L1 -1340 6702 6614 * 212 220 20 0 chr5 19763672 19763722 -183321810 + (TA)n Simple_repeat Simple_repeat 1 51 0 1494 227 79 49 chr5 19763722 19763938 -183321594 + L1ME1 LINE L1 5613 5821 -345 476 32 16 0 chr5 19763938 19764000 -183321532 + (CA)n Simple_repeat Simple_repeat 2 64 0 1494 227 79 49 chr5 19764000 19764316 -183321216 + L1ME1 LINE L1 5821 6161 -5 477 280 0 0 chr5 19765034 19765134 -183320398 - L2 LINE L2 -15 3298 3199 23 0 0 0 chr5 19765151 19765174 -183320358 + AT_rich Low_complexity Low_complexity 1 23 0 2486 65 0 3 chr5 19765276 19765585 -183319947 - AluY SINE Alu -3 308 1 2266 81 3 0 chr5 19768066 19768372 -183317160 + AluSp SINE Alu 1 307 0 1263 238 59 0 chr5 19769605 19769925 -183315607 + MER58B DNA MER1_type 1 339 -2 2293 169 24 10 chr5 19770249 19770664 -183314868 + MSTB LTR MaLR 1 421 -5 568 314 207 5 chr5 19770670 19771056 -183314476 + L2 LINE L2 2199 2662 -652 1236 154 9 9 chr5 19772220 19772453 -183313079 + LTR1 LTR ERV1 1 233 -552 630 60 0 0 chr5 19772585 19772668 -183312864 + (TCCCC)n Simple_repeat Simple_repeat 2 84 0 2036 142 3 0 chr5 19772668 19772963 -183312569 - AluSg SINE Alu -14 296 1 184 70 47 47 chr5 19773198 19773241 -183312291 + T-rich Low_complexity Low_complexity 2 44 0 707 185 143 37 chr5 19773271 19773460 -183312072 + MER3 DNA MER1_type 1 209 0 754 215 33 56 chr5 19773639 19773853 -183311679 + MER58A DNA MER1_type 1 209 -15 2166 105 22 29 chr5 19774246 19774561 -183310971 - AluSq SINE Alu 0 313 1 285 264 107 8 chr5 19775068 19775189 -183310343 + MLT1H1 LTR MaLR 422 554 -1 2343 99 0 3 chr5 19775450 19775754 -183309778 + AluSx SINE Alu 1 303 -9 3041 127 82 24 chr5 19775833 19776331 -183309201 + MER1A DNA MER1_type 1 527 0 347 361 5 25 chr5 19776396 19776598 -183308934 - L2 LINE L2 -3 3310 3113 273 341 157 18 chr5 19776617 19776834 -183308698 - L2 LINE L2 -885 2429 2183 850 228 133 34 chr5 19777141 19777240 -183308292 + L1M4 LINE L1 2735 2823 -3323 2287 111 0 9 chr5 19777240 19777555 -183307977 + AluSq SINE Alu 1 312 -1 850 228 133 34 chr5 19777555 19778065 -183307467 + L1M4 LINE L1 2823 3404 -2742 1159 133 5 0 chr5 19778157 19778353 -183307179 - L1MA2 LINE L1 0 6304 6108 742 69 0 0 chr5 19778410 19778511 -183307021 - L1P1 LINE L1 -414 5741 5641 * 3591 60 12 10 chr5 19778431 19778928 -183306604 + L1PA2 LINE L1 5657 6154 -1 1245 284 164 23 chr5 19778927 19780087 -183305445 + L1M4 LINE L1 3528 4850 -1296 * 664 200 0 13 chr5 19780182 19780337 -183305195 + L1MB8 LINE L1 6025 6177 -1 1213 273 99 13 chr5 19780352 19780818 -183304714 + L1MEc LINE L1 233 738 -5658 2753 207 39 12 chr5 19780838 19781586 -183303946 - L1M4 LINE L1 -981 5165 4398 25998 31 0 0 chr5 19781588 19785509 -183300023 - L1PA3 LINE L1 -3 6152 2233 14789 57 3 4 chr5 19785509 19787458 -183298074 - L1PA3 LINE L1 -4191 1955 9 868 193 0 0 chr5 19787467 19787664 -183297868 - L1M4 LINE L1 -1717 4429 4233 * 895 236 71 3 chr5 19787659 19787955 -183297577 + L1M4 LINE L1 5088 5403 -743 387 0 0 0 chr5 19790049 19790092 -183295440 + (CA)n Simple_repeat Simple_repeat 2 44 0 295 320 109 39 chr5 19790724 19790852 -183294680 - L2 LINE L2 -33 3239 3103 2381 102 0 3 chr5 19791303 19791617 -183293915 + AluSp SINE Alu 1 313 0 932 151 19 73 chr5 19792530 19792735 -183292797 - MER20 DNA MER1_type -25 194 1 207 0 0 0 chr5 19795276 19795299 -183290233 + (T)n Simple_repeat Simple_repeat 1 23 0 256 321 63 31 chr5 19795422 19795581 -183289951 - MIR SINE MIR -70 192 29 2267 103 7 0 chr5 19796564 19796864 -183288668 - AluSp SINE Alu 0 313 12 17874 27 6 0 chr5 19797174 19800086 -183285446 + L1PA4 LINE L1 3240 6148 -7 337 271 47 9 chr5 19800391 19800498 -183285034 - MIR3 SINE MIR -6 202 92 197 189 170 19 chr5 19801244 19801297 -183284235 + L2 LINE L2 3253 3313 0 1042 263 100 15 chr5 19801742 19802141 -183283391 + MLT2B1 LTR ERVL 1 433 -87 34 42 0 0 chr5 19802197 19802245 -183283287 + AT_rich Low_complexity Low_complexity 1 48 0 269 88 48 6 chr5 19802281 19802336 -183283196 + MLT2C2 LTR ERVL 397 464 0 26 30 0 0 chr5 19802823 19802856 -183282676 + AT_rich Low_complexity Low_complexity 1 33 0 393 22 0 0 chr5 19803322 19803368 -183282164 + (CA)n Simple_repeat Simple_repeat 2 47 0 1882 163 3 3 chr5 19804251 19804540 -183280992 - AluSx SINE Alu -23 289 1 1586 170 35 84 chr5 19804759 19805012 -183280520 - MSTB1 LTR MaLR 0 432 209 3204 116 8 25 chr5 19805012 19805530 -183280002 - MER75 DNA T2_type -2 512 4 1586 170 35 84 chr5 19805530 19805730 -183279802 - MSTB1 LTR MaLR -223 209 1 2230 124 0 0 chr5 19806907 19807205 -183278327 + AluSx SINE Alu 2 299 -13 2936 37 3 0 chr5 19807262 19807616 -183277916 + L1PA5 LINE L1 5792 6146 -8 182 62 31 0 chr5 19807630 19807662 -183277870 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 202 247 65 39 chr5 19807705 19807782 -183277750 - L2 LINE L2 -1 3312 3234 2322 97 0 25 chr5 19809362 19809683 -183275849 + AluSq SINE Alu 1 313 0 502 245 0 0 chr5 19809746 19809885 -183275647 - L1MB7 LINE L1 -52 6132 5994 1324 234 118 60 chr5 19810464 19811149 -183274383 + MER50 LTR ERV1 10 734 0 1775 110 91 19 chr5 19812163 19812471 -183273061 + AluSq SINE Alu 1 327 0 1126 184 14 5 chr5 19814431 19814648 -183270884 + MER20 DNA MER1_type 1 219 0 767 183 178 4 chr5 19814802 19815032 -183270500 + MLT1E1 LTR MaLR 1 270 -384 1097 213 16 4 chr5 19815073 19815317 -183270215 + MLT1E1 LTR MaLR 403 649 -5 2265 124 0 0 chr5 19815326 19815632 -183269900 + AluSx SINE Alu 5 310 -2 2024 135 58 6 chr5 19815771 19816118 -183269414 + MLT1A1 LTR MaLR 1 365 0 288 267 113 51 chr5 19816510 19816705 -183268827 + MIR3 SINE MIR 2 208 0 21 0 0 0 chr5 19816792 19816813 -183268719 + AT_rich Low_complexity Low_complexity 1 21 0 190 277 85 32 chr5 19817509 19817603 -183267929 - MIR SINE MIR 0 262 164 530 209 13 20 chr5 19817603 19817756 -183267776 - MER106B DNA MER1_type 0 1059 908 1946 156 13 7 chr5 19817885 19818192 -183267340 - AluJo SINE Alu -3 309 1 2529 222 52 21 chr5 19818196 19818827 -183266705 + MER82 DNA MER2_type 1 651 -2 560 252 50 71 chr5 19818895 19819133 -183266399 + MIR SINE MIR 23 255 -7 2076 108 44 36 chr5 19819665 19820025 -183265507 + THE1B LTR MaLR 2 364 0 438 171 12 0 chr5 19820483 19820565 -183264967 + MLT1F1 LTR MaLR 1 83 -484 274 197 155 0 chr5 19820569 19820640 -183264892 + MER5A DNA MER1_type 105 186 -3 231 329 43 29 chr5 19820815 19820955 -183264577 + MIR SINE MIR 11 152 -110 1928 130 19 82 chr5 19821003 19821427 -183264105 - MLT2C1 LTR ERVL 0 397 1 34 55 0 0 chr5 19821747 19821802 -183263730 + AT_rich Low_complexity Low_complexity 1 55 0 204 179 0 0 chr5 19823585 19823624 -183261908 + (TG)n Simple_repeat Simple_repeat 2 40 0 257 176 54 0 chr5 19823865 19823939 -183261593 - L1MA9 LINE L1 -22 6290 6213 2251 186 19 11 chr5 19824129 19824607 -183260925 - L1MB4 LINE L1 0 6180 5699 287 216 0 0 chr5 19825379 19825455 -183260077 + AluS SINE Alu 229 304 0 551 169 0 0 chr5 19825623 19825712 -183259820 - AluSg/x SINE Alu -17 295 207 1555 169 4 0 chr5 19825712 19825948 -183259584 - AluSx SINE Alu -75 237 1 574 255 66 66 chr5 19826263 19826475 -183259057 + MIR SINE MIR 21 232 -30 1748 159 10 24 chr5 19826671 19826966 -183258566 + AluJo SINE Alu 9 299 -13 269 364 10 0 chr5 19827229 19827328 -183258204 + L2 LINE L2 3133 3232 -40 1459 224 35 13 chr5 19827569 19827944 -183257588 - MLT1C LTR MaLR -34 433 51 4431 143 22 7 chr5 19829291 19830002 -183255530 + MER72 LTR ERV1 1 722 0 198 330 74 74 chr5 19830038 19830214 -183255318 + MIR3 SINE MIR 10 185 -23 216 0 0 0 chr5 19832336 19832360 -183253172 + (T)n Simple_repeat Simple_repeat 1 24 0 3183 164 38 38 chr5 19832555 19833183 -183252349 - MER21B LTR ERV1 -24 839 212 594 167 0 10 chr5 19833351 19833453 -183252079 - FLAM_C SINE Alu -19 124 24 216 325 26 60 chr5 19833703 19833854 -183251678 + MIR3 SINE MIR 37 182 -26 552 284 175 0 chr5 19834064 19834275 -183251257 + MIR SINE MIR 5 252 -10 381 160 13 0 chr5 19835848 19835923 -183249609 - MER116 DNA Mariner -4 76 1 2095 127 0 0 chr5 19836322 19836614 -183248918 - AluSx SINE Alu -20 292 1 350 287 115 32 chr5 19837362 19837519 -183248013 - MIR SINE MIR -33 229 60 211 264 231 22 chr5 19837619 19837710 -183247822 + MIR SINE MIR 23 132 -76 2303 92 0 3 chr5 19837849 19838143 -183247389 + AluSc SINE Alu 4 296 -13 2495 68 0 0 chr5 19838412 19838708 -183246824 - AluY SINE Alu -15 296 1 259 378 140 7 chr5 19839254 19839561 -183245971 - L2 LINE L2 -375 2939 2592 2008 148 135 5 chr5 19840249 19840628 -183244904 - MSTA LTR MaLR 0 428 1 2419 83 0 3 chr5 19841169 19841471 -183244061 + AluSq SINE Alu 1 301 -12 405 295 0 0 chr5 19842157 19842262 -183243270 + MIR SINE MIR 73 177 -85 398 339 95 31 chr5 19842273 19842929 -183242603 - L2 LINE L2 -29 3284 2527 203 321 74 12 chr5 19844533 19844614 -183240918 - L2 LINE L2 -1 3312 3227 368 260 110 14 chr5 19844656 19844802 -183240730 + L1ME3A LINE L1 5628 5787 -383 606 287 29 55 chr5 19844802 19845074 -183240458 + L2 LINE L2 3047 3311 -2 345 257 20 20 chr5 19845074 19845175 -183240357 + GA-rich Low_complexity Low_complexity 1 101 0 290 293 0 10 chr5 19845191 19845290 -183240242 + L1ME3A LINE L1 5808 5905 -265 2063 215 44 40 chr5 19845292 19846035 -183239497 - L1MA9 LINE L1 -743 5403 4658 * 3274 160 47 68 chr5 19846033 19846913 -183238619 + L1MA9 LINE L1 5410 6270 -42 185 222 67 22 chr5 19848316 19848361 -183237171 + MIR SINE MIR 94 140 -68 328 303 0 20 chr5 19848793 19848892 -183236640 - MIR SINE MIR -11 251 155 965 191 65 8 chr5 19849663 19849925 -183235607 - L1MB4 LINE L1 -6 6174 5898 23 33 0 0 chr5 19850444 19850474 -183235058 + AT_rich Low_complexity Low_complexity 1 30 0 2236 70 7 7 chr5 19850592 19850877 -183234655 + AluY SINE Alu 2 286 -25 1950 181 123 23 chr5 19851271 19851702 -183233830 + MLT2B1 LTR ERVL 1 474 -46 847 57 51 23 chr5 19851715 19851890 -183233642 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 368 71 18 0 chr5 19851988 19852044 -183233488 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 213 65 0 0 chr5 19852611 19852642 -183232890 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 279 316 173 0 chr5 19853099 19853232 -183232300 - MER5A DNA MER1_type 0 189 34 284 284 45 58 chr5 19853270 19853425 -183232107 + MIR SINE MIR 91 243 -19 236 214 0 0 chr5 19854177 19854219 -183231313 + MIR SINE MIR 106 147 -115 370 354 62 85 chr5 19854221 19854729 -183230803 - L2 LINE L2 0 3272 2792 2369 96 0 0 chr5 19854729 19855030 -183230502 - AluSc SINE Alu -8 301 1 370 354 62 85 chr5 19855030 19855213 -183230319 - L2 LINE L2 -480 2792 2606 230 291 133 86 chr5 19855231 19855660 -183229872 - L2 LINE L2 -939 2375 1927 1517 179 65 17 chr5 19858056 19858408 -183227124 - MER58D DNA MER1_type -11 375 7 226 255 0 0 chr5 19858559 19858610 -183226922 - MIR SINE MIR -3 259 209 1410 148 63 77 chr5 19858655 19859006 -183226526 + MER4A LTR ERV1 1 346 -318 594 92 242 25 chr5 19859101 19859221 -183226311 + MER4C LTR ERV1 300 445 -20 435 258 13 5 chr5 19859251 19859392 -183226140 - MIR SINE MIR -62 146 33 470 252 34 20 chr5 19859445 19859592 -183225940 + MARNA DNA Mariner 12 160 -426 2416 205 42 7 chr5 19859953 19860406 -183225126 + MER70A LTR ERVL 4 472 0 261 309 31 80 chr5 19860745 19860907 -183224625 + L2 LINE L2 2231 2384 -930 1103 194 63 63 chr5 19861011 19861082 -183224450 - MER33 DNA MER1_type -2266 319 249 2124 131 0 16 chr5 19861082 19861250 -183224282 - AluSx SINE Alu -11 301 139 2294 98 0 0 chr5 19861250 19861547 -183223985 - AluSx SINE Alu -15 297 1 2124 131 0 16 chr5 19861547 19861684 -183223848 - AluSx SINE Alu -173 139 1 1103 194 63 63 chr5 19861684 19861931 -183223601 - MER33 DNA MER1_type -2335 250 1 240 155 138 0 chr5 19862364 19862422 -183223110 + L2 LINE L2 3188 3253 -60 231 278 0 0 chr5 19862545 19862599 -183222933 + L2 LINE L2 3215 3268 -4 1870 121 0 4 chr5 19863533 19863805 -183221727 - MER66B LTR ERV1 0 486 216 479 222 0 26 chr5 19863807 19863924 -183221608 - MER66B LTR ERV1 -372 114 1 2327 153 31 0 chr5 19864365 19864718 -183220814 + THE1B LTR MaLR 1 364 0 519 231 75 81 chr5 19865756 19865987 -183219545 + L1MC4a LINE L1 5822 6052 -1756 2284 116 0 0 chr5 19865987 19866288 -183219244 + AluSx SINE Alu 1 301 -11 519 231 75 81 chr5 19866288 19866351 -183219181 + L1MC4a LINE L1 6052 6114 -1694 229 65 0 0 chr5 19866353 19866399 -183219133 - LTR66 LTR ERVL -171 439 394 233 232 0 37 chr5 19866401 19866483 -183219049 - L1MC4 LINE L1 -1347 6695 6617 * 259 160 187 0 chr5 19866411 19866486 -183219046 + L1MC4 LINE L1 6617 6705 -1337 428 296 8 0 chr5 19866616 19866741 -183218791 + L1MC4 LINE L1 7793 7918 -124 186 133 0 0 chr5 19866755 19866785 -183218747 + (CA)n Simple_repeat Simple_repeat 1 30 0 1693 202 8 60 chr5 19866874 19867255 -183218277 + MLT1A1 LTR MaLR 5 365 0 5889 135 26 14 chr5 19870523 19870623 -183214909 + L1MC1 LINE L1 5351 5448 -885 1888 143 77 44 chr5 19870623 19870986 -183214546 - THE1C LTR MaLR 0 375 1 10368 120 26 42 chr5 19870987 19872591 -183212941 - MSTA-int LTR MaLR -1 1579 3 1923 143 172 21 chr5 19872593 19872965 -183212567 - MSTA LTR MaLR 0 428 1 5889 135 26 14 chr5 19872965 19873829 -183211703 + L1MC1 LINE L1 5448 6331 -2 545 285 98 32 chr5 19874643 19874959 -183210573 + L2 LINE L2 2174 2510 -804 347 323 36 12 chr5 19875733 19875900 -183209632 - MIR SINE MIR -10 252 82 279 122 0 0 chr5 19876614 19876663 -183208869 + (CTATA)n Simple_repeat Simple_repeat 4 52 0 1727 211 62 57 chr5 19876860 19877297 -183208235 + MER77 LTR ERV1 167 605 0 306 250 0 13 chr5 19877493 19877569 -183207963 + L3 LINE CR1 1096 1170 -407 271 258 61 74 chr5 19877604 19877767 -183207765 - MLT1J LTR MaLR -49 462 302 2426 57 0 10 chr5 19878146 19878446 -183207086 + AluY SINE Alu 1 297 -14 3449 139 43 0 chr5 19878469 19879022 -183206510 + L1MA8 LINE L1 5708 6284 -7 23 0 0 0 chr5 19879025 19879048 -183206484 + AT_rich Low_complexity Low_complexity 1 23 0 2195 148 33 33 chr5 19879084 19879448 -183206084 + THE1B LTR MaLR 1 364 0 279 284 45 23 chr5 19879998 19880086 -183205446 + L3 LINE CR1 1481 1570 -7 373 288 34 0 chr5 19880143 19880261 -183205271 + L1ME4a LINE L1 5973 6094 -27 209 196 0 39 chr5 19882158 19882209 -183203323 + (TATATG)n Simple_repeat Simple_repeat 3 51 0 220 289 53 13 chr5 19882297 19882373 -183203159 + MIR SINE MIR 63 141 -67 641 266 48 19 chr5 19882603 19882810 -183202722 - MIR SINE MIR 0 262 50 392 292 112 29 chr5 19883894 19884222 -183201310 + MLT1J LTR MaLR 9 328 -122 2436 74 0 3 chr5 19884260 19884557 -183200975 - AluY SINE Alu -15 296 1 630 211 105 37 chr5 19884694 19884884 -183200648 + MER3 DNA MER1_type 1 203 -6 237 164 91 0 chr5 19886479 19886534 -183198998 + HsTC2 DNA Tc2 1233 1292 -606 809 252 57 9 chr5 19886577 19886807 -183198725 - MIR SINE MIR -21 241 1 4427 78 7 4 chr5 19887468 19888020 -183197512 + MER41A LTR ERV1 1 554 0 180 97 0 0 chr5 19888357 19888388 -183197144 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2157 103 3 0 chr5 19888482 19888772 -183196760 - AluSx SINE Alu -21 291 1 274 310 78 47 chr5 19888833 19888962 -183196570 + L2 LINE L2 3126 3258 -14 238 227 18 100 chr5 19889165 19889275 -183196257 + L2 LINE L2 2430 2530 -784 1900 128 83 0 chr5 19889567 19889855 -183195677 + AluSx SINE Alu 1 312 0 1932 59 0 0 chr5 19890582 19890819 -183194713 + AluY SINE Alu 75 311 0 2433 104 28 43 chr5 19890846 19891275 -183194257 - THE1C LTR MaLR 0 375 1 181 387 44 29 chr5 19891480 19891684 -183193848 - L2 LINE L2 -213 3059 2853 377 382 7 13 chr5 19892436 19892588 -183192944 + MIR3 SINE MIR 10 160 -48 881 256 100 14 chr5 19892745 19893088 -183192444 - LTR16A LTR ERVL 0 457 60 218 250 243 40 chr5 19893222 19893370 -183192162 + MIR SINE MIR 25 202 -6 21 0 0 0 chr5 19893932 19893953 -183191579 + AT_rich Low_complexity Low_complexity 1 21 0 266 235 39 29 chr5 19896056 19896180 -183189352 + MIR SINE MIR 96 216 -46 419 256 103 54 chr5 19896815 19897057 -183188475 + MIR SINE MIR 9 262 0 200 263 0 40 chr5 19897237 19897313 -183188219 + CT-rich Low_complexity Low_complexity 2 74 0 584 266 168 12 chr5 19899228 19899472 -183186060 - L3 LINE CR1 -40 1537 1256 1851 158 6 29 chr5 19899498 19899785 -183185747 + MER47A DNA MER2_type 27 306 -2017 2086 116 3 0 chr5 19899785 19900069 -183185463 - AluSq SINE Alu -24 289 5 1851 158 6 29 chr5 19900069 19900129 -183185403 + MER47A DNA MER2_type 306 366 0 1679 203 14 28 chr5 19900957 19901317 -183184215 + MLT1A1 LTR MaLR 11 365 0 3369 195 82 1 chr5 19901330 19902001 -183183531 + MER44D DNA MER2_type 1 597 -8 328 294 24 141 chr5 19902062 19902439 -183183093 + L2 LINE L2 2981 3313 0 696 288 18 9 chr5 19902442 19902668 -183182864 + MIR SINE MIR 29 256 -6 306 224 0 0 chr5 19903763 19903821 -183181711 - MER5A DNA MER1_type -118 71 14 2550 118 30 23 chr5 19904081 19904378 -183181154 - MER57B LTR ERV1 0 434 131 2098 120 0 0 chr5 19904378 19904696 -183180836 - AluSx SINE Alu 0 318 1 2550 118 30 23 chr5 19904696 19904828 -183180704 - MER57B LTR ERV1 -303 131 1 288 77 0 0 chr5 19905941 19905980 -183179552 + (CA)n Simple_repeat Simple_repeat 2 40 0 411 282 90 115 chr5 19907111 19907753 -183177779 + L1M2 LINE L1 530 1155 -5694 182 175 0 35 chr5 19908556 19908613 -183176919 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2391 116 79 20 chr5 19909143 19909547 -183175985 - MSTC LTR MaLR 0 428 1 213 255 61 133 chr5 19909722 19909820 -183175712 - MIR3 SINE MIR -51 157 67 352 293 47 0 chr5 19910357 19910463 -183175069 + L2 LINE L2 3162 3272 0 3029 202 116 33 chr5 19910784 19911689 -183173843 + L1MDa LINE L1 617 1596 -4944 1414 141 101 4 chr5 19911689 19911965 -183173567 + L1MD1 LINE L1 5930 6232 -10 356 299 77 1 chr5 19913288 19913430 -183172102 - MIR SINE MIR -49 213 63 310 160 28 57 chr5 19913755 19913861 -183171671 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 2448 125 77 10 chr5 19914379 19914780 -183170752 - MSTA LTR MaLR 0 428 1 384 283 37 64 chr5 19914785 19914972 -183170560 - MLT1J2 LTR MaLR -4 446 265 407 230 20 0 chr5 19915029 19915129 -183170403 - MLT1J LTR MaLR -325 186 85 871 320 46 38 chr5 19915241 19915635 -183169897 - L2 LINE L2 -37 3276 2880 1276 321 158 45 chr5 19916078 19916486 -183169046 - L2 LINE L2 -426 2888 2527 1477 173 70 11 chr5 19916486 19916770 -183168762 + AluJo SINE Alu 7 307 -5 1276 321 158 45 chr5 19916770 19917668 -183167864 - L2 LINE L2 -787 2527 1435 364 329 71 52 chr5 19918226 19918332 -183167200 + LTR16A LTR ERVL 130 233 -217 884 257 23 0 chr5 19918332 19918546 -183166986 - MER20 DNA MER1_type 0 219 1 364 329 71 52 chr5 19918546 19918649 -183166883 + LTR16A LTR ERVL 233 343 -107 460 300 94 23 chr5 19918715 19919022 -183166510 + HERV16 LTR ERVL 13 341 -4655 461 349 37 0 chr5 19919106 19919324 -183166208 + LTR16A LTR ERVL 172 397 -53 382 328 102 4 chr5 19919381 19919616 -183165916 + L2 LINE L2 1705 1962 -1352 1313 256 152 72 chr5 19919646 19919856 -183165676 + L2 LINE L2 639 831 -2483 2493 158 9 21 chr5 19919856 19920287 -183165245 + MSTC LTR MaLR 3 428 0 1313 256 152 72 chr5 19920287 19921000 -183164532 + L2 LINE L2 831 1635 -1679 976 291 77 31 chr5 19921041 19921457 -183164075 + LTR16C LTR ERVL 57 491 0 2238 298 65 48 chr5 19921523 19921997 -183163535 + L2 LINE L2 1765 2230 -1084 1062 119 24 0 chr5 19921997 19922165 -183163367 - L1MA3 LINE L1 0 6305 6134 2238 298 65 48 chr5 19922165 19922704 -183162828 + L2 LINE L2 2230 2795 -519 1841 177 0 13 chr5 19923354 19923664 -183161868 + AluJb SINE Alu 1 306 -6 2163 188 65 62 chr5 19924537 19925165 -183160367 + LTR8A LTR ERV1 45 674 -53 299 291 43 10 chr5 19927603 19927722 -183157810 - MIR3 SINE MIR -6 202 78 2289 113 0 0 chr5 19927750 19928051 -183157481 + AluSx SINE Alu 1 301 -11 2098 133 48 25 chr5 19928759 19929113 -183156419 - THE1B LTR MaLR 0 364 3 3231 111 62 0 chr5 19929115 19929612 -183155920 - THE1B-int LTR MaLR 0 1580 1053 246 62 0 0 chr5 19929610 19929642 -183155890 - THE1B-int LTR MaLR -1548 32 1 * 2306 112 48 31 chr5 19929642 19930000 -183155532 - THE1B LTR MaLR 0 364 1 850 51 8 17 chr5 19931114 19931231 -183154301 - L1PA8 LINE L1 0 6172 6057 180 0 0 0 chr5 19931231 19931251 -183154281 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1695 101 0 0 chr5 19931305 19931542 -183153990 - L1PA8 LINE L1 -11 6161 5925 2166 130 0 0 chr5 19934240 19934548 -183150984 - AluSx SINE Alu -2 310 3 192 300 56 56 chr5 19934720 19934810 -183150722 - L3b LINE CR1 -94 1489 1400 2208 124 0 0 chr5 19935145 19935444 -183150088 - AluSx SINE Alu -13 299 1 189 253 147 27 chr5 19935738 19935813 -183149719 - MIR SINE MIR -69 139 56 1926 144 27 3 chr5 19936590 19936882 -183148650 - AluSx SINE Alu -12 300 2 2479 68 10 0 chr5 19936965 19937272 -183148260 + AluY SINE Alu 1 310 -1 3846 146 140 7 chr5 19937551 19938279 -183147253 + LTR1B LTR ERV1 2 826 0 209 301 55 0 chr5 19938339 19938412 -183147120 + MIR SINE MIR 71 147 -115 643 272 72 38 chr5 19938798 19939033 -183146499 - MIR SINE MIR -16 246 4 2154 176 5 17 chr5 19940322 19940679 -183144853 - L1PB4 LINE L1 -7 6149 5796 225 0 0 0 chr5 19940679 19940704 -183144828 + (TG)n Simple_repeat Simple_repeat 2 26 0 2154 176 5 17 chr5 19940704 19940756 -183144776 - L1PB4 LINE L1 -360 5796 5745 3148 191 13 7 chr5 19940757 19941469 -183144063 + L1 LINE L1 4328 5043 -1103 633 199 0 0 chr5 19941547 19941678 -183143854 + (CA)n Simple_repeat Simple_repeat 2 132 0 2335 185 41 11 chr5 19941679 19942138 -183143394 - MLT2B2 LTR ERVL -40 475 3 729 134 17 0 chr5 19942607 19942726 -183142806 + MLT1E LTR MaLR 40 160 -433 2415 226 68 15 chr5 19942867 19943382 -183142150 + L1M4 LINE L1 4682 5243 -903 1784 172 33 7 chr5 19943382 19943684 -183141848 + AluJo SINE Alu 1 310 -2 2415 226 68 15 chr5 19943684 19943846 -183141686 + L1M4 LINE L1 5243 5395 -751 10688 204 38 10 chr5 19943855 19949181 -183136351 + L1M3f LINE L1 4 5525 -803 2016 172 36 33 chr5 19949181 19949731 -183135801 - MLT2A2 LTR ERVL 0 554 1 657 123 0 0 chr5 19949731 19949837 -183135695 + L1PA16 LINE L1 5339 5444 -859 * 10347 162 20 7 chr5 19949832 19950644 -183134888 + L1MA1 LINE L1 3122 3922 -2380 2833 92 0 12 chr5 19950644 19951047 -183134485 + L1PA10 LINE L1 5771 6168 0 10347 162 20 7 chr5 19951047 19953291 -183132241 + L1MA1 LINE L1 3922 6220 -82 2657 151 22 0 chr5 19953291 19953746 -183131786 + L1PA16 LINE L1 5685 6157 -9 26 64 0 0 chr5 19953746 19953793 -183131739 + AT_rich Low_complexity Low_complexity 1 47 0 2102 134 0 6 chr5 19954230 19954544 -183130988 - AluSx SINE Alu 0 312 1 513 286 26 16 chr5 19954980 19955169 -183130363 + LTR16C LTR ERVL 301 491 0 1539 192 36 9 chr5 19957677 19958010 -183127522 - L1PA16 LINE L1 -22 6144 5803 495 355 52 16 chr5 19958239 19958605 -183126927 - LTR16C LTR ERVL 0 491 113 271 109 0 78 chr5 19959073 19959137 -183126395 - Alu SINE Alu -1 301 243 389 268 32 24 chr5 19960578 19960701 -183124831 - MIR3 SINE MIR -18 190 67 1844 214 36 42 chr5 19962292 19962656 -183122876 - MLT1D LTR MaLR -13 492 130 1823 146 93 74 chr5 19962656 19962725 -183122807 - MSTB LTR MaLR 0 426 360 2073 145 0 0 chr5 19962725 19963021 -183122511 - AluSq SINE Alu -17 296 1 1823 146 93 74 chr5 19963021 19963369 -183122163 - MSTB LTR MaLR -66 360 1 1844 214 36 42 chr5 19963369 19963499 -183122033 - MLT1D LTR MaLR -375 130 1 1335 256 62 41 chr5 19963598 19963946 -183121586 - MER74B LTR ERVL -67 555 193 2325 95 0 0 chr5 19963946 19964241 -183121291 - AluSc SINE Alu -14 295 1 1335 256 62 41 chr5 19964241 19964380 -183121152 - MER74B LTR ERVL -429 193 58 192 40 0 0 chr5 19965399 19965424 -183120108 + (CA)n Simple_repeat Simple_repeat 2 26 0 1616 154 49 10 chr5 19965787 19966093 -183119439 + MER46B DNA MER2_type 44 236 0 45 75 0 0 chr5 19967508 19967602 -183117930 + AT_rich Low_complexity Low_complexity 1 94 0 565 207 49 0 chr5 19967977 19968141 -183117391 - L1M4 LINE L1 -3706 2440 2269 3577 268 74 36 chr5 19968151 19969062 -183116470 - L1ME1 LINE L1 -5 6230 5355 3684 142 18 5 chr5 19969062 19969687 -183115845 - L1PB4 LINE L1 -14 6142 5510 3577 268 74 36 chr5 19969687 19971854 -183113678 - L1ME1 LINE L1 -880 5355 3273 2229 150 11 0 chr5 19971854 19972214 -183113318 - MER47A DNA MER2_type -2 364 1 3577 268 74 36 chr5 19972214 19973271 -183112261 - L1ME1 LINE L1 -2962 3273 2258 2241 100 13 10 chr5 19973271 19973570 -183111962 - AluSc SINE Alu -9 300 1 3577 268 74 36 chr5 19973570 19975386 -183110146 - L1ME1 LINE L1 -3977 2258 82 281 249 27 141 chr5 19975651 19975836 -183109696 + MIR SINE MIR 20 183 -79 32 0 0 0 chr5 19975960 19975992 -183109540 + AT_rich Low_complexity Low_complexity 1 32 0 35 24 0 0 chr5 19976021 19976063 -183109469 + AT_rich Low_complexity Low_complexity 1 42 0 3468 240 89 14 chr5 19976635 19977912 -183107620 + L1MD1 LINE L1 19 1502 -5038 1564 193 66 14 chr5 19977912 19978260 -183107272 + MLT2D LTR ERVL 1 366 -48 1627 164 31 65 chr5 19978278 19978386 -183107146 + L1MD1 LINE L1 1528 1638 -4902 994 69 0 0 chr5 19978386 19978517 -183107015 + L1PB1 LINE L1 6020 6150 -1 1627 164 31 65 chr5 19978517 19978854 -183106678 + L1MD1 LINE L1 1638 1958 -4582 * 3254 218 57 32 chr5 19978853 19980651 -183104881 + L1MD1 LINE L1 4654 6539 -97 1297 256 22 14 chr5 19980651 19981022 -183104510 + MLT1A2 LTR MaLR 1 374 0 3254 218 57 32 chr5 19981022 19981120 -183104412 + L1MD1 LINE L1 6539 6633 -3 417 39 0 0 chr5 19981670 19981721 -183103811 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 340 328 90 25 chr5 19982631 19982832 -183102700 - MIR SINE MIR -29 233 20 257 313 10 21 chr5 19983162 19983280 -183102252 + MIR SINE MIR 35 127 -81 314 264 124 35 chr5 19983288 19983546 -183101986 - MLT1J LTR MaLR 0 511 231 1593 152 114 20 chr5 19983721 19984063 -183101469 - THE1C LTR MaLR 0 375 2 283 303 53 53 chr5 19985037 19985189 -183100343 - MIR SINE MIR -32 230 79 21 0 0 0 chr5 19985219 19985240 -183100292 + AT_rich Low_complexity Low_complexity 1 21 0 339 139 158 40 chr5 19986085 19986186 -183099346 + L1MB7 LINE L1 6053 6165 -19 223 320 165 0 chr5 19986963 19987066 -183098466 + L2 LINE L2 3150 3269 -3 318 321 142 5 chr5 19987088 19987300 -183098232 + L2 LINE L2 3002 3242 -71 1746 96 122 11 chr5 19988284 19988554 -183096978 + AluSg1 SINE Alu 1 300 -9 1161 119 0 0 chr5 19988554 19988742 -183096790 + AluSg/x SINE Alu 134 321 0 275 401 89 0 chr5 19989480 19989762 -183095770 + ERVL LTR ERVL 1758 2064 -3700 25 0 0 0 chr5 19990621 19990646 -183094886 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr5 19992308 19992339 -183093193 + AT_rich Low_complexity Low_complexity 1 31 0 2212 147 0 16 chr5 19992345 19992719 -183092813 - L1PB1 LINE L1 -8 6143 5776 305 192 0 60 chr5 19992762 19992929 -183092603 + (TA)n Simple_repeat Simple_repeat 2 158 0 343 209 22 52 chr5 19992951 19993085 -183092447 + (TATATG)n Simple_repeat Simple_repeat 4 133 0 7208 177 8 7 chr5 19993102 19995178 -183090354 - L1PB1 LINE L1 -371 5780 3706 1679 228 5 16 chr5 19995437 19995815 -183089717 + MLT1A2 LTR MaLR 1 374 0 681 255 205 11 chr5 19995819 19996209 -183089323 + MLT1C LTR MaLR 1 466 -1 181 280 20 20 chr5 19996456 19996506 -183089026 + L2 LINE L2 3223 3272 0 244 255 0 0 chr5 19996700 19996747 -183088785 + polypurine Low_complexity Low_complexity 4 50 0 36 40 0 0 chr5 19998098 19998148 -183087384 + AT_rich Low_complexity Low_complexity 1 50 0 981 126 82 6 chr5 19998253 19998436 -183087096 + THE1C LTR MaLR 179 375 0 7742 141 113 8 chr5 19998436 19999867 -183085665 + THE1C-int LTR MaLR 1 1580 0 2035 144 65 8 chr5 19999867 20000222 -183085310 + THE1C LTR MaLR 1 375 0 2043 146 0 3 chr5 20000944 20001238 -183084294 + AluSx SINE Alu 1 293 -19 1573 200 35 9 chr5 20002841 20003181 -183082351 - MLT1A2 LTR MaLR -20 354 6 544 257 74 29 chr5 20003185 20003360 -183082172 + MLT1G LTR MaLR 108 290 -300 932 18 9 0 chr5 20103926 20104035 -182981497 + L1HS LINE L1 6044 6153 -2 23 54 0 0 chr5 20104035 20104072 -182981460 + AT_rich Low_complexity Low_complexity 1 37 0 43485 30 21 2 chr5 20104754 20110789 -182974743 + L1HS LINE L1 2 6155 0 22 0 0 0 chr5 20110847 20110869 -182974663 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr5 20112562 20112586 -182972946 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr5 20113525 20113546 -182971986 + (TTTAA)n Simple_repeat Simple_repeat 5 25 0 732 104 0 9 chr5 20113551 20113657 -182971875 - L1MA5A LINE L1 -5 6292 6188 2145 177 11 16 chr5 20115805 20116172 -182969360 + MLT1A1 LTR MaLR 1 365 0 2367 69 3 3 chr5 20117938 20118227 -182967305 + AluSp SINE Alu 1 289 -24 207 261 36 9 chr5 20118227 20118338 -182967194 + (TA)n Simple_repeat Simple_repeat 1 114 0 318 305 23 38 chr5 20119857 20119988 -182965544 + L2 LINE L2 3185 3313 0 1889 157 4 0 chr5 20120172 20120453 -182965079 - AluSx SINE Alu -30 282 1 1886 108 0 4 chr5 20121026 20121276 -182964256 + AluSx SINE Alu 48 296 -16 2492 58 3 10 chr5 20121362 20121671 -182963861 + AluY SINE Alu 1 307 -4 317 276 79 8 chr5 20121986 20122113 -182963419 - L1ME4a LINE L1 -11 6110 5975 467 121 0 0 chr5 20122122 20122188 -182963344 + MADE1 DNA Mariner 15 80 0 203 0 0 36 chr5 20123008 20123036 -182962496 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1677 111 103 0 chr5 20123038 20123299 -182962233 - AluSp SINE Alu -25 288 1 425 250 72 72 chr5 20124062 20124169 -182961363 + MIR SINE MIR 9 118 -144 2542 50 3 0 chr5 20124169 20124469 -182961063 - AluY SINE Alu -10 301 1 425 250 72 72 chr5 20124469 20124541 -182960991 + MIR SINE MIR 117 188 -74 228 213 0 0 chr5 20124638 20124685 -182960847 + L2 LINE L2 3265 3311 -2 513 292 167 33 chr5 20124757 20125147 -182960385 + L2 LINE L2 2547 2998 -315 1057 230 164 39 chr5 20125186 20125594 -182959938 + LTR33 LTR ERVL 58 516 -5 736 249 106 26 chr5 20125595 20125868 -182959664 + L2 LINE L2 3019 3313 0 2116 144 0 45 chr5 20126556 20126764 -182958768 - MER1B DNA MER1_type -2373 337 150 2156 92 44 0 chr5 20126764 20127059 -182958473 + AluSp SINE Alu 1 308 -5 2116 144 0 45 chr5 20127059 20127203 -182958329 - MER1B DNA MER1_type -2560 150 1 712 238 23 23 chr5 20127565 20127737 -182957795 - MER5B DNA MER1_type -6 172 1 2120 106 0 4 chr5 20128788 20129108 -182956424 + AluSx SINE Alu 13 331 0 263 188 16 31 chr5 20131011 20131075 -182954457 - MER4-int LTR ERV1 -5433 1165 1103 1648 160 16 39 chr5 20131284 20131590 -182953942 + AluJb SINE Alu 1 299 -13 1498 289 66 38 chr5 20131784 20132361 -182953171 + MLT1E LTR MaLR 1 593 0 1007 232 79 92 chr5 20132689 20132821 -182952711 + MLT1B LTR MaLR 1 133 -257 1820 79 0 0 chr5 20132821 20133048 -182952484 + AluY SINE Alu 83 309 -2 1007 232 79 92 chr5 20133048 20133294 -182952238 + MLT1B LTR MaLR 133 374 -16 3034 129 9 5 chr5 20135065 20135491 -182950041 + MSTA LTR MaLR 1 428 0 4676 82 28 3 chr5 20135637 20136256 -182949276 + L1PB1 LINE L1 5515 6148 -3 24 0 0 0 chr5 20136260 20136284 -182949248 + AT_rich Low_complexity Low_complexity 1 24 0 322 240 44 115 chr5 20136309 20136492 -182949040 + MIR SINE MIR 90 259 -3 240 0 49 24 chr5 20136565 20136606 -182948926 + (TA)n Simple_repeat Simple_repeat 1 42 0 631 194 304 28 chr5 20136614 20136867 -182948665 - MER5C DNA MER1_type -1 323 1 327 254 55 65 chr5 20137198 20137399 -182948133 + LTR67 LTR ERVL 359 557 0 344 246 71 48 chr5 20138258 20138384 -182947148 - MER5B DNA MER1_type -49 129 1 180 333 0 0 chr5 20140204 20140255 -182945277 + MIR SINE MIR 66 116 -92 30568 100 19 12 chr5 20140893 20146609 -182938923 - L1PA7 LINE L1 0 6469 691 1764 187 0 0 chr5 20147193 20147477 -182938055 - AluJb SINE Alu -28 284 1 258 229 47 153 chr5 20147635 20147805 -182937727 - L2 LINE L2 -48 3265 3114 720 230 42 21 chr5 20147961 20148152 -182937380 + MLT1E LTR MaLR 1 195 -398 622 217 7 35 chr5 20148258 20148401 -182937131 + MLT1B LTR MaLR 423 561 -6 448 239 20 70 chr5 20148418 20148619 -182936913 - L2 LINE L2 -172 3141 2951 205 266 138 27 chr5 20148654 20148842 -182936690 - MIR SINE MIR -30 232 24 1975 251 65 45 chr5 20148855 20149180 -182936352 - MLT1E2 LTR MaLR -4 622 278 2433 86 0 0 chr5 20149180 20149481 -182936051 - AluSc SINE Alu -8 301 1 1975 251 65 45 chr5 20149481 20149753 -182935779 - MLT1E2 LTR MaLR -348 278 13 237 338 86 7 chr5 20149920 20150071 -182935461 - L2 LINE L2 -218 3054 2892 2971 87 3 8 chr5 20150391 20150769 -182934763 + L1PA8A LINE L1 5753 6128 -3 233 346 0 12 chr5 20151578 20151659 -182933873 + GA-rich Low_complexity Low_complexity 6 85 0 422 333 22 30 chr5 20152231 20152462 -182933070 + MLT1K LTR MaLR 350 578 -10 387 191 63 35 chr5 20152834 20152953 -182932579 - MSTB1 LTR MaLR 0 432 246 465 165 23 11 chr5 20153001 20153106 -182932426 - MSTB1 LTR MaLR 0 432 346 286 27 27 0 chr5 20153170 20153207 -182932325 - MSTB1 LTR MaLR 0 432 395 1591 165 32 51 chr5 20153373 20153726 -182931806 - MSTB1 LTR MaLR -72 324 4 333 315 135 17 chr5 20154692 20154861 -182930671 + MIR SINE MIR 61 253 -9 2356 138 30 25 chr5 20154861 20155223 -182930309 - THE1B LTR MaLR 0 364 1 204 227 0 0 chr5 20155323 20155367 -182930165 + L2 LINE L2 3265 3308 -5 516 345 21 21 chr5 20156319 20156513 -182929019 + MIR3 SINE MIR 6 199 -9 403 305 47 8 chr5 20157339 20157467 -182928065 + MIR SINE MIR 12 144 -118 226 162 0 0 chr5 20157468 20157505 -182928027 - MER20 DNA MER1_type 0 219 183 2315 141 8 3 chr5 20157508 20157870 -182927662 + THE1B LTR MaLR 1 364 0 521 207 43 0 chr5 20157882 20157998 -182927534 - MER20 DNA MER1_type -98 121 1 224 107 89 0 chr5 20159052 20159108 -182926424 + (TA)n Simple_repeat Simple_repeat 1 61 0 858 202 69 28 chr5 20159790 20160008 -182925524 + MIR SINE MIR 3 229 -33 254 258 90 0 chr5 20160091 20160180 -182925352 + MIR3 SINE MIR 84 180 -28 355 320 121 40 chr5 20160219 20160561 -182924971 + L1ME4a LINE L1 5539 5935 -186 198 0 0 0 chr5 20160561 20160583 -182924949 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 355 320 121 40 chr5 20160583 20160737 -182924795 + L1ME4a LINE L1 5935 6075 -46 1316 102 5 32 chr5 20160738 20160954 -182924578 - L1PA13 LINE L1 -1 6162 5953 2175 98 9 15 chr5 20160954 20161290 -182924242 + THE1A LTR MaLR 22 355 0 563 309 47 21 chr5 20161360 20161593 -182923939 + MIR SINE MIR 18 256 -6 652 282 86 21 chr5 20164117 20164351 -182921181 + MIR SINE MIR 2 250 -12 333 0 0 0 chr5 20165454 20165491 -182920041 + (TG)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr5 20165659 20165684 -182919848 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr5 20167162 20167187 -182918345 + AT_rich Low_complexity Low_complexity 1 25 0 520 275 105 16 chr5 20167248 20167452 -182918080 + MIR SINE MIR 3 219 -43 2257 135 34 8 chr5 20167588 20167943 -182917589 - THE1B LTR MaLR 0 364 1 2261 107 0 0 chr5 20168625 20168923 -182916609 + AluSg SINE Alu 1 298 -12 1887 224 75 47 chr5 20169194 20169788 -182915744 - MLT1E1 LTR MaLR -12 642 28 2773 85 11 11 chr5 20169788 20170163 -182915369 + THE1C LTR MaLR 1 375 0 1887 224 75 47 chr5 20170163 20170192 -182915340 - MLT1E1 LTR MaLR -626 28 1 405 332 129 11 chr5 20170232 20170518 -182915014 - L1MC/D LINE L1 -2457 5585 5266 927 233 12 27 chr5 20170640 20170898 -182914634 + MER93b LTR ERV1 108 361 -12 2487 60 0 3 chr5 20171315 20171615 -182913917 - AluY SINE Alu -12 299 1 245 203 8 55 chr5 20173358 20173486 -182912046 + (TA)n Simple_repeat Simple_repeat 1 122 0 337 298 142 19 chr5 20173842 20174047 -182911485 - L2 LINE L2 -1 3312 3083 1905 152 45 22 chr5 20174376 20174732 -182910800 - THE1B LTR MaLR 0 364 1 6002 121 16 3 chr5 20174732 20175658 -182909874 - THE1B-int LTR MaLR 0 1580 643 550 274 83 94 chr5 20175714 20176437 -182909095 + L1M4 LINE L1 3782 4492 -1654 2306 88 20 0 chr5 20176437 20176732 -182908800 - AluSc SINE Alu -8 301 1 550 274 83 94 chr5 20176732 20177066 -182908466 + L1M4 LINE L1 4492 4828 -1318 206 256 13 0 chr5 20177490 20177568 -182907964 + GA-rich Low_complexity Low_complexity 1 79 0 318 299 57 32 chr5 20177801 20178272 -182907260 + L1M4 LINE L1 4878 5360 -786 1783 166 47 36 chr5 20178771 20179132 -182906400 + MLT1A1 LTR MaLR 1 365 0 1089 298 55 70 chr5 20180597 20181111 -182904421 + L2 LINE L2 2806 3311 -2 246 259 37 49 chr5 20181149 20181230 -182904302 + L2 LINE L2 3192 3271 -42 218 281 151 60 chr5 20181594 20181779 -182903753 + MIR SINE MIR 13 214 -48 256 219 37 24 chr5 20182533 20182615 -182902917 - MIR SINE MIR -128 134 52 695 236 37 11 chr5 20182788 20183185 -182902347 - LTR37B LTR ERV1 0 468 6 1677 159 49 62 chr5 20183813 20184127 -182901405 + MLT1A1 LTR MaLR 1 311 -54 2383 125 28 17 chr5 20184127 20184487 -182901045 - THE1B LTR MaLR 0 364 1 1677 159 49 62 chr5 20184487 20184542 -182900990 + MLT1A1 LTR MaLR 311 365 0 339 197 94 158 chr5 20186708 20186779 -182898753 - MER69 DNA AcHobo -1036 190 116 360 0 0 0 chr5 20186779 20186819 -182898713 + (TG)n Simple_repeat Simple_repeat 2 41 0 2196 109 0 0 chr5 20186819 20187103 -182898429 - AluSx SINE Alu -28 284 1 339 197 94 158 chr5 20187103 20187233 -182898299 - MER69 DNA AcHobo -1108 118 1 180 0 0 0 chr5 20188034 20188054 -182897478 + (CCA)n Simple_repeat Simple_repeat 3 22 0 652 249 22 5 chr5 20188856 20189041 -182896491 - MER53 DNA DNA -1 188 1 336 239 123 71 chr5 20189058 20189213 -182896319 - MIR SINE MIR 0 262 100 1187 236 121 11 chr5 20189523 20189879 -182895653 + MSTD LTR MaLR 2 396 0 181 400 19 0 chr5 20190191 20190296 -182895236 - L2 LINE L2 -221 3051 2945 2130 133 0 0 chr5 20190586 20190888 -182894644 + AluSx SINE Alu 1 302 -10 180 359 127 21 chr5 20191341 20191483 -182894049 + MIR3 SINE MIR 15 171 -37 235 331 129 8 chr5 20192348 20192472 -182893060 + MIR3 SINE MIR 62 200 -8 2441 62 0 56 chr5 20192985 20193309 -182892223 - AluSx SINE Alu -6 306 1 261 326 170 36 chr5 20193379 20193796 -182891736 + L3 LINE CR1 1064 1536 -41 227 343 0 0 chr5 20194245 20194315 -182891217 + MIR SINE MIR 42 111 -151 * 780 203 39 44 chr5 20194311 20194493 -182891039 + MER5A DNA MER1_type 8 188 -1 373 233 167 17 chr5 20194493 20194612 -182890920 + MIR SINE MIR 102 238 -24 2028 126 0 38 chr5 20194917 20195234 -182890298 - AluSc SINE Alu -4 305 1 365 288 23 23 chr5 20195752 20195884 -182889648 - MIR SINE MIR -122 140 9 33 43 0 0 chr5 20196018 20196065 -182889467 + AT_rich Low_complexity Low_complexity 1 47 0 205 299 75 59 chr5 20196174 20196361 -182889171 - L2 LINE L2 -8 3264 3075 194 163 70 23 chr5 20196358 20196401 -182889131 + MER5B DNA MER1_type 102 146 -32 * 585 206 7 35 chr5 20198089 20198230 -182887302 + MER58B DNA MER1_type 204 340 -1 369 0 0 0 chr5 20198560 20198601 -182886931 + (CA)n Simple_repeat Simple_repeat 1 41 0 248 188 16 0 chr5 20199148 20199212 -182886320 + (CA)n Simple_repeat Simple_repeat 2 66 0 2399 137 6 6 chr5 20199438 20199802 -182885730 - THE1B LTR MaLR 0 364 1 266 308 125 10 chr5 20200161 20200265 -182885267 - MIR SINE MIR -63 145 30 2925 123 32 20 chr5 20200652 20201018 -182884514 - L1PB3 LINE L1 0 6154 5779 267 103 0 0 chr5 20201018 20201057 -182884475 + (TA)n Simple_repeat Simple_repeat 2 40 0 2925 123 32 20 chr5 20201057 20201187 -182884345 - L1PB3 LINE L1 -375 5779 5652 255 240 260 0 chr5 20202540 20202636 -182882896 - MER103 DNA DNA -44 122 2 6918 62 3 3 chr5 20202717 20204102 -182881430 - L1PA7 LINE L1 0 6154 4768 4802 75 3 0 chr5 20204102 20204780 -182880752 + L1PA7 LINE L1 4080 4759 -1387 6311 79 5 5 chr5 20204789 20205678 -182879854 - L1PA8 LINE L1 -6 6166 5278 2122 149 21 21 chr5 20205688 20206076 -182879456 + MLT1B LTR MaLR 1 388 -2 282 327 55 35 chr5 20206395 20206594 -182878938 - L2 LINE L2 -2 3311 3109 2224 119 0 0 chr5 20206729 20207023 -182878509 - AluSq SINE Alu -16 297 4 246 277 34 67 chr5 20207744 20207863 -182877669 - MIR SINE MIR 0 262 148 185 265 0 20 chr5 20207920 20207969 -182877563 - MIR SINE MIR -201 61 14 225 290 16 0 chr5 20208513 20208575 -182876957 - L2 LINE L2 -24 3248 3186 2044 128 33 3 chr5 20210063 20210367 -182875165 + AluSq SINE Alu 1 313 0 274 299 55 8 chr5 20210636 20210763 -182874769 - MER94 DNA DNA -1 133 1 243 327 37 9 chr5 20211183 20211290 -182874242 + MIR3 SINE MIR 98 207 -1 2033 164 5 44 chr5 20212038 20212386 -182873146 + MLT1B LTR MaLR 1 334 -56 2290 135 12 24 chr5 20212386 20212727 -182872805 - MER1B DNA MER1_type 0 337 1 2033 164 5 44 chr5 20212727 20212762 -182872770 + MLT1B LTR MaLR 334 369 -21 209 33 33 0 chr5 20212804 20212834 -182872698 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1615 191 0 3 chr5 20212836 20213119 -182872413 - AluJo SINE Alu -30 282 1 269 341 0 11 chr5 20213693 20213784 -182871748 + GA-rich Low_complexity Low_complexity 2 91 0 645 307 115 48 chr5 20214166 20214352 -182871180 - L2 LINE L2 -10 3303 3131 2201 118 3 0 chr5 20214352 20214648 -182870884 + AluSx SINE Alu 1 297 -15 645 307 115 48 chr5 20214648 20215274 -182870258 - L2 LINE L2 -182 3131 2440 420 97 0 0 chr5 20215608 20215670 -182869862 + (CA)n Simple_repeat Simple_repeat 2 63 0 1840 214 36 13 chr5 20216033 20216421 -182869111 + MLT2C1 LTR ERVL 1 397 0 289 307 143 7 chr5 20216653 20216793 -182868739 + MIR SINE MIR 104 262 0 2291 98 3 3 chr5 20217643 20217948 -182867584 + AluSp SINE Alu 1 305 -8 206 303 90 11 chr5 20218151 20218240 -182867292 + L2 LINE L2 3138 3233 -39 247 359 53 23 chr5 20219710 20219841 -182865691 + MER91A DNA MER1_type 26 160 -36 213 280 0 0 chr5 20219847 20219897 -182865635 + MER91A DNA MER1_type 137 186 -10 255 318 23 8 chr5 20219956 20220088 -182865444 - MER94 DNA DNA 0 134 1 1154 214 10 0 chr5 20220821 20221027 -182864505 - MER58A DNA MER1_type -15 209 2 189 0 0 0 chr5 20222339 20222360 -182863172 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 296 283 71 0 chr5 20223484 20223583 -182861949 + L2 LINE L2 3207 3312 -1 1045 233 97 44 chr5 20223714 20224126 -182861406 + MLT1C LTR MaLR 34 467 0 267 247 27 130 chr5 20224743 20224889 -182860643 + Tigger8 DNA MER2_type 527 657 -9 420 271 30 98 chr5 20225357 20225560 -182859972 + LTR33 LTR ERVL 13 201 -320 382 243 179 7 chr5 20225654 20225794 -182859738 + LTR33 LTR ERVL 328 491 -30 230 336 65 43 chr5 20226069 20226301 -182859231 - MIR SINE MIR -5 257 21 490 284 110 5 chr5 20226810 20227028 -182858504 - MIR SINE MIR 0 262 22 297 304 52 52 chr5 20227126 20227320 -182858212 + L3 LINE CR1 771 964 -613 200 270 16 32 chr5 20227888 20227951 -182857581 + L3 LINE CR1 1220 1281 -296 2218 103 10 0 chr5 20228155 20228457 -182857075 + AluY SINE Alu 1 305 -6 998 124 65 0 chr5 20228458 20228611 -182856921 + AluSc SINE Alu 132 294 -15 1783 213 63 16 chr5 20229012 20229453 -182856079 + MLT1C LTR MaLR 6 467 0 224 322 123 20 chr5 20229843 20229989 -182855543 + L2 LINE L2 2944 3104 -209 1131 246 146 25 chr5 20230069 20230500 -182855032 - MLT1D LTR MaLR -2 503 21 28 29 0 0 chr5 20230579 20230614 -182854918 + AT_rich Low_complexity Low_complexity 1 35 0 195 162 0 0 chr5 20231009 20231046 -182854486 + GA-rich Low_complexity Low_complexity 2 38 0 2213 163 78 8 chr5 20232426 20232824 -182852708 - MSTB LTR MaLR 0 426 1 209 290 129 16 chr5 20232995 20233119 -182852413 - MIR3 SINE MIR -3 205 68 1202 304 198 49 chr5 20233328 20234697 -182850835 + L2 LINE L2 87 1707 -1607 6254 66 8 1 chr5 20234697 20235459 -182850073 + L1PA7 LINE L1 5373 6139 -15 1202 304 198 49 chr5 20235459 20235613 -182849919 + L2 LINE L2 1707 1837 -1477 507 254 115 90 chr5 20235668 20236199 -182849333 - HAL1 LINE L1 -100 2407 1864 1839 151 37 14 chr5 20237822 20238172 -182847360 - L1MA4 LINE L1 -7 6293 5936 334 214 10 61 chr5 20238802 20238900 -182846632 - MER5B DNA MER1_type -82 96 4 183 318 114 0 chr5 20238979 20239067 -182846465 - L2 LINE L2 -1900 1414 1317 252 0 0 0 chr5 20239558 20239586 -182845946 + (T)n Simple_repeat Simple_repeat 1 28 0 395 327 47 0 chr5 20240080 20240230 -182845302 + MIR SINE MIR 50 206 -56 22 56 0 0 chr5 20241204 20241240 -182844292 + AT_rich Low_complexity Low_complexity 1 36 0 885 228 73 23 chr5 20242898 20243321 -182842211 + MLT1D LTR MaLR 22 503 -2 1565 160 49 45 chr5 20243657 20243945 -182841587 - AluJo SINE Alu -23 289 1 21 0 0 0 chr5 20243954 20243975 -182841557 + AT_rich Low_complexity Low_complexity 1 21 0 1467 199 10 23 chr5 20244108 20244409 -182841123 + AluJo SINE Alu 1 297 -15 375 261 164 29 chr5 20244594 20244801 -182840731 - MIR SINE MIR -8 254 20 2143 111 27 10 chr5 20245238 20245535 -182839997 + AluSq SINE Alu 3 304 -9 193 225 25 0 chr5 20245690 20245730 -182839802 - MIR SINE MIR -137 71 31 219 333 0 35 chr5 20246118 20246205 -182839327 + MIR SINE MIR 30 113 -95 371 302 107 18 chr5 20246445 20246642 -182838890 + MIR SINE MIR 3 215 -47 297 341 9 67 chr5 20246795 20247018 -182838514 - MLT1J LTR MaLR -193 318 109 899 285 10 24 chr5 20247352 20247640 -182837892 - L1MC4a LINE L1 0 7808 7525 2300 106 0 0 chr5 20248755 20249057 -182836475 - AluY SINE Alu -9 302 1 1709 142 11 4 chr5 20250046 20250314 -182835218 + L1PA11 LINE L1 5905 6174 0 294 29 0 0 chr5 20251228 20251263 -182834269 + (TAGG)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr5 20251264 20251288 -182834244 + (CAGA)n Simple_repeat Simple_repeat 1 24 0 252 321 28 9 chr5 20251469 20251575 -182833957 - L2 LINE L2 -948 2366 2259 1736 200 26 29 chr5 20252074 20252459 -182833073 + MER58D DNA MER1_type 3 386 0 526 313 32 36 chr5 20252497 20252731 -182832801 - MIR SINE MIR -26 236 6 474 165 35 0 chr5 20253142 20253227 -182832305 + MLT2B3 LTR ERVL 1 88 -466 1191 226 19 70 chr5 20253234 20253548 -182831984 + MLT2B3 LTR ERVL 257 554 0 247 228 94 134 chr5 20254020 20254169 -182831363 - MIR SINE MIR -118 144 2 435 234 6 126 chr5 20254623 20254790 -182830742 - MIR SINE MIR -68 194 48 1611 228 129 9 chr5 20254940 20255366 -182830166 + MLT1E LTR MaLR 111 587 -6 1591 185 27 10 chr5 20255466 20255758 -182829774 + AluJb SINE Alu 1 297 -15 180 245 0 20 chr5 20257258 20257307 -182828225 + MIR3 SINE MIR 157 204 -4 407 213 0 25 chr5 20257484 20257564 -182827968 + L2 LINE L2 3189 3266 -47 180 77 0 0 chr5 20257585 20257611 -182827921 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr5 20257727 20257749 -182827783 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr5 20258338 20258367 -182827165 + AT_rich Low_complexity Low_complexity 1 29 0 245 222 0 0 chr5 20258808 20258853 -182826679 - MER20 DNA MER1_type 0 219 175 651 156 78 0 chr5 20258861 20258989 -182826543 + L1PA16 LINE L1 6029 6166 0 207 100 0 0 chr5 20261917 20261947 -182823585 + (CA)n Simple_repeat Simple_repeat 1 30 0 388 354 15 56 chr5 20263120 20263173 -182822359 - MIR3 SINE MIR -4 204 150 512 212 258 7 chr5 20263173 20263324 -182822208 + MER5A DNA MER1_type 1 189 0 388 354 15 56 chr5 20263324 20263468 -182822064 - MIR3 SINE MIR -58 150 15 180 0 0 0 chr5 20264816 20264836 -182820696 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 661 74 279 0 chr5 20265058 20265180 -182820352 - L1PA7 LINE L1 0 6154 5999 283 302 113 9 chr5 20267156 20267262 -182818270 + L2 LINE L2 3196 3312 -1 372 303 59 17 chr5 20267319 20267438 -182818094 + MER91A DNA MER1_type 20 143 -53 2427 61 0 3 chr5 20267698 20267994 -182817538 - AluY SINE Alu -16 295 1 2358 108 0 0 chr5 20268070 20268377 -182817155 - AluSx SINE Alu -5 307 1 1087 204 195 0 chr5 20268411 20268642 -182816890 + AluJo SINE Alu 32 307 -5 2062 122 59 6 chr5 20268650 20268987 -182816545 - THE1B LTR MaLR 0 364 10 1077 204 23 9 chr5 20269057 20269273 -182816259 - MER20 DNA MER1_type 0 219 1 658 289 29 49 chr5 20370478 20370724 -182714808 - MIR SINE MIR -13 249 9 289 342 9 18 chr5 20374053 20374164 -182711368 - L2 LINE L2 -23 3290 3181 329 332 57 16 chr5 20374467 20374660 -182710872 - L2 LINE L2 -490 2824 2624 193 326 20 31 chr5 20374661 20374759 -182710773 + MIR SINE MIR 164 260 -2 271 295 213 21 chr5 20375980 20376397 -182709135 - L2 LINE L2 -23 3290 2743 219 36 0 0 chr5 20377765 20377793 -182707739 + (TG)n Simple_repeat Simple_repeat 2 29 0 352 288 83 49 chr5 20378214 20378419 -182707113 + L1 LINE L1 3560 3771 -2375 215 163 82 0 chr5 20378601 20378650 -182706882 - MIR SINE MIR -1 261 209 303 242 121 10 chr5 20378934 20379033 -182706499 - L2 LINE L2 -14 3299 3190 216 0 0 0 chr5 20379439 20379463 -182706069 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 2118 76 0 134 chr5 20380363 20380720 -182704812 - AluSp SINE Alu -4 309 1 328 312 71 24 chr5 20381725 20381895 -182703637 + MIR SINE MIR 85 262 0 505 246 8 25 chr5 20382766 20382888 -182702644 + L1MC3 LINE L1 7131 7250 -535 865 185 109 112 chr5 20382889 20383202 -182702330 + MLT1A1 LTR MaLR 1 312 -53 297 294 0 0 chr5 20383354 20383439 -182702093 - L1MC3 LINE L1 -1214 6571 6487 261 163 0 0 chr5 20383442 20383483 -182702049 - MLT2B1 LTR ERVL 0 520 477 282 116 0 0 chr5 20383483 20383526 -182702006 + (TG)n Simple_repeat Simple_repeat 2 44 0 539 177 0 0 chr5 20383661 20383740 -182701792 - Tigger5 DNA MER2_type -2244 79 1 234 0 0 0 chr5 20383749 20383775 -182701757 + (TG)n Simple_repeat Simple_repeat 2 27 0 1291 232 37 92 chr5 20383775 20384263 -182701269 - MLT2B1 LTR ERVL -59 461 1 337 285 66 40 chr5 20384318 20384469 -182701063 + L2 LINE L2 3158 3312 -1 198 0 0 0 chr5 20387687 20387709 -182697823 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1409 13 0 0 chr5 20387709 20387860 -182697672 - L1PA2 LINE L1 -13 6142 5992 1141 227 106 11 chr5 20388039 20388321 -182697211 + MER58B DNA MER1_type 32 340 -1 581 331 6 0 chr5 20390369 20390541 -182694991 - MIR SINE MIR -6 256 84 966 260 146 31 chr5 20391450 20391896 -182693636 + MLT1G1 LTR MaLR 90 586 -9 851 254 37 18 chr5 20392031 20392248 -182693284 + MIR SINE MIR 8 228 -34 229 188 14 29 chr5 20395665 20395734 -182689798 + (CTG)n Simple_repeat Simple_repeat 3 70 0 25 51 0 0 chr5 20395760 20395799 -182689733 + GC_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr5 20396026 20396054 -182689478 + GC_rich Low_complexity Low_complexity 1 28 0 210 37 0 0 chr5 20396059 20396086 -182689446 + (CGG)n Simple_repeat Simple_repeat 1 27 0 209 277 0 50 chr5 20396224 20396325 -182689207 + G-rich Low_complexity Low_complexity 4 99 0 218 310 0 0 chr5 20396428 20396515 -182689017 + G-rich Low_complexity Low_complexity 1 87 0 296 297 56 146 chr5 20398507 20398776 -182686756 - L2 LINE L2 -2 3270 3065 2080 116 7 7 chr5 20398776 20399079 -182686453 - AluSc SINE Alu -6 303 1 296 297 56 146 chr5 20399079 20399310 -182686222 - L2 LINE L2 -207 3065 2815 186 280 152 45 chr5 20399864 20400128 -182685404 - L2 LINE L2 -1207 2107 1816 2218 113 0 0 chr5 20400171 20400463 -182685069 + AluSx SINE Alu 1 292 -20 2304 194 24 72 chr5 20400541 20400835 -182684697 - MER21B LTR ERV1 -3 860 553 1730 145 19 0 chr5 20400835 20401097 -182684435 + AluJb SINE Alu 2 268 -44 2304 194 24 72 chr5 20401097 20401112 -182684420 - MER21B LTR ERV1 -310 553 539 255 31 0 0 chr5 20401112 20401144 -182684388 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2304 194 24 72 chr5 20401144 20401386 -182684146 - MER21B LTR ERV1 -324 539 335 6551 93 2 0 chr5 20401386 20402228 -182683304 + THE1B-int LTR MaLR 737 1580 0 2272 141 30 25 chr5 20402228 20402590 -182682942 + THE1B LTR MaLR 1 364 0 261 337 0 12 chr5 20403081 20403167 -182682365 + L2 LINE L2 3186 3270 -2 1573 221 22 14 chr5 20403309 20403667 -182681865 - MLT1H1 LTR MaLR 0 555 195 663 224 6 60 chr5 20403667 20403850 -182681682 + MER20 DNA MER1_type 3 175 -44 277 215 91 135 chr5 20403866 20404116 -182681416 - MLT1H1 LTR MaLR -300 249 1 453 276 32 19 chr5 20404748 20404904 -182680628 + Charlie8 DNA MER1_type 62 219 -2198 276 111 0 0 chr5 20405009 20405054 -182680478 + (TAA)n Simple_repeat Simple_repeat 2 46 0 383 297 77 46 chr5 20405295 20405490 -182680042 + MLT1H LTR MaLR 119 319 -230 353 244 8 32 chr5 20405622 20405745 -182679787 - L1MC5 LINE L1 -36 7925 7806 1778 166 7 0 chr5 20406260 20406550 -182678982 - AluSx SINE Alu -20 292 1 1178 239 84 22 chr5 20406622 20407027 -182678505 - L1MC/D LINE L1 -2000 5808 5379 292 175 25 12 chr5 20407027 20407107 -182678425 + (TA)n Simple_repeat Simple_repeat 1 81 0 198 71 0 0 chr5 20407108 20407136 -182678396 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 648 222 86 56 chr5 20407140 20407302 -182678230 - AluJb SINE Alu -23 289 123 1272 285 87 25 chr5 20407406 20407890 -182677642 - MER34 LTR ERV1 0 542 29 600 247 0 20 chr5 20408803 20408949 -182676583 - LTR67 LTR ERVL -5 552 410 1349 260 91 29 chr5 20409241 20409725 -182675807 + MLT1E LTR MaLR 75 588 -5 189 121 0 0 chr5 20409806 20409839 -182675693 + (A)n Simple_repeat Simple_repeat 1 33 0 417 110 55 0 chr5 20410475 20410548 -182674984 - L1M4 LINE L1 -3172 2974 2898 461 276 97 21 chr5 20410781 20410926 -182674606 - MIR SINE MIR -70 192 37 2026 107 48 46 chr5 20411633 20412006 -182673526 - THE1C LTR MaLR -1 374 1 21 82 0 0 chr5 20412098 20412147 -182673385 + AT_rich Low_complexity Low_complexity 1 49 0 34 55 0 0 chr5 20412236 20412291 -182673241 + AT_rich Low_complexity Low_complexity 1 55 0 189 222 22 0 chr5 20413657 20413702 -182671830 + L3 LINE CR1 1516 1561 -16 627 269 55 38 chr5 20414350 20414588 -182670944 - MIR SINE MIR -6 256 15 232 232 0 0 chr5 20415863 20415919 -182669613 + (CAGAGA)n Simple_repeat Simple_repeat 2 57 0 571 241 11 0 chr5 20416447 20416608 -182668924 + L1ME3 LINE L1 5460 5625 -537 447 290 0 26 chr5 20416625 20416780 -182668752 + MLT1H LTR MaLR 22 172 -377 1257 264 49 3 chr5 20416902 20417269 -182668263 + L1ME3 LINE L1 5778 6161 -1 438 282 26 48 chr5 20418282 20418509 -182667023 - L1ME LINE L1 -298 5823 5602 461 92 13 0 chr5 20418701 20418777 -182666755 + (TG)n Simple_repeat Simple_repeat 2 78 0 362 335 85 6 chr5 20419034 20419284 -182666248 - L1ME LINE L1 -1973 4173 3889 958 242 68 84 chr5 20420743 20421256 -182664276 + MLT1J LTR MaLR 5 509 -2 310 280 84 38 chr5 20421331 20421570 -182663962 + L1MC/D LINE L1 2583 2832 -3314 398 277 73 55 chr5 20421753 20422027 -182663505 + L1MC/D LINE L1 5317 5595 -2213 28 0 0 0 chr5 20422509 20422537 -182662995 + AT_rich Low_complexity Low_complexity 1 28 0 197 273 55 0 chr5 20422831 20422886 -182662646 + MIR SINE MIR 205 262 0 1853 158 55 0 chr5 20423736 20424064 -182661468 - MER7A DNA MER2_type -2 344 1 4928 177 83 1 chr5 20424157 20425782 -182659750 + L1MA4 LINE L1 4349 6120 -180 1546 72 36 18 chr5 20425784 20426006 -182659526 - L1PA10 LINE L1 -1 6167 5942 984 164 11 5 chr5 20426006 20426194 -182659338 + L1MA8 LINE L1 6096 6285 -6 268 207 0 0 chr5 20426209 20426267 -182659265 - Charlie1 DNA MER1_type -524 2237 2180 21 57 0 0 chr5 20426267 20426302 -182659230 + AT_rich Low_complexity Low_complexity 1 35 0 33 43 0 0 chr5 20427301 20427348 -182658184 + AT_rich Low_complexity Low_complexity 1 47 0 361 153 86 0 chr5 20427348 20427511 -182658021 + (TA)n Simple_repeat Simple_repeat 1 177 0 23 33 0 0 chr5 20427511 20427541 -182657991 + AT_rich Low_complexity Low_complexity 1 30 0 1238 56 0 12 chr5 20428125 20428287 -182657245 - L1PA5 LINE L1 -6 6148 5989 21 0 0 0 chr5 20429212 20429233 -182656299 + AT_rich Low_complexity Low_complexity 1 21 0 434 284 101 51 chr5 20429595 20429852 -182655680 + L2 LINE L2 3044 3313 0 268 308 117 25 chr5 20430006 20430126 -182655406 - MIR SINE MIR -130 132 2 582 220 24 6 chr5 20430630 20430798 -182654734 + L1M4 LINE L1 2213 2383 -3763 732 198 54 164 chr5 20430798 20431243 -182654289 + MLT1A1 LTR MaLR 1 396 0 831 216 82 4 chr5 20431243 20431488 -182654044 + L1M4 LINE L1 2379 2642 -3504 724 223 53 49 chr5 20431558 20431805 -182653727 - MER46C DNA MER2_type -5 333 86 519 315 156 8 chr5 20431827 20432303 -182653229 + L2 LINE L2 2508 3065 -248 2148 178 160 140 chr5 20432346 20432905 -182652627 - L1MC3 LINE L1 -17 7768 7222 253 219 115 62 chr5 20432905 20433001 -182652531 - MLT1F1 LTR MaLR -431 136 36 2148 178 160 140 chr5 20433001 20433015 -182652517 - L1MC3 LINE L1 -563 7222 7210 284 56 0 0 chr5 20433015 20433051 -182652481 - tRNA-Gly-GGG tRNA tRNA -38 36 1 2148 178 160 140 chr5 20433051 20433519 -182652013 - L1MC3 LINE L1 -575 7210 6572 226 287 9 9 chr5 20433634 20433742 -182651790 + (TA)n Simple_repeat Simple_repeat 1 108 0 930 276 91 52 chr5 20434758 20435219 -182650313 + L2 LINE L2 2421 2899 -415 2158 107 0 35 chr5 20435311 20435621 -182649911 + AluSq SINE Alu 1 299 -14 218 380 36 36 chr5 20436564 20436701 -182648831 + L2 LINE L2 3136 3272 0 228 290 32 0 chr5 20437811 20437873 -182647659 - L2 LINE L2 -224 3048 2985 1213 171 0 5 chr5 20437937 20438136 -182647396 + AluJb SINE Alu 107 304 -8 297 319 7 44 chr5 20438912 20439047 -182646485 + L2 LINE L2 3183 3312 -1 642 269 66 0 chr5 20439138 20439380 -182646152 - MIR SINE MIR 0 262 5 628 109 10 0 chr5 20439497 20439598 -182645934 + L1MB4 LINE L1 6077 6178 -2 226 211 28 70 chr5 20440023 20440094 -182645438 + L2 LINE L2 3201 3268 -4 2233 91 3 10 chr5 20440518 20440815 -182644717 + AluSx SINE Alu 5 299 -13 21 0 0 0 chr5 20441527 20441548 -182643984 + AT_rich Low_complexity Low_complexity 1 21 0 1237 214 40 3 chr5 20441578 20441882 -182643650 - MER39 LTR ERV1 0 707 393 3544 33 0 0 chr5 20441926 20442345 -182643187 + L1PA5 LINE L1 5724 6142 -12 290 291 39 0 chr5 20442360 20442492 -182643040 - MER39 LTR ERV1 -320 387 115 233 174 0 0 chr5 20442519 20442565 -182642967 - MER39 LTR ERV1 -661 46 1 477 165 72 0 chr5 20442733 20442830 -182642702 + MER58C DNA MER1_type 112 215 0 708 139 23 8 chr5 20443439 20443568 -182641964 + MER20 DNA MER1_type 30 160 -59 1072 125 20 50 chr5 20444300 20444500 -182641032 + MER31A LTR ERV1 1 194 -291 807 239 27 0 chr5 20445312 20445496 -182640036 - AluJo SINE Alu -4 308 120 419 307 101 51 chr5 20445498 20445873 -182639659 - L1MC/D LINE L1 -456 5665 5394 1512 190 133 12 chr5 20445883 20446283 -182639249 - MER39 LTR ERV1 0 707 260 1256 172 96 98 chr5 20446289 20446655 -182638877 - MLT1A1 LTR MaLR 0 365 1 1028 148 0 13 chr5 20446957 20447112 -182638420 - AluJb SINE Alu -18 294 142 432 217 42 28 chr5 20447118 20447261 -182638271 + L1MA9 LINE L1 6143 6287 -25 4454 209 15 41 chr5 20447296 20448326 -182637206 + L1PA11 LINE L1 3 1005 -6576 11401 88 2 1 chr5 20448333 20449893 -182635639 - THE1B-int LTR MaLR -18 1562 1 1785 122 131 24 chr5 20449893 20450222 -182635310 - THE1B LTR MaLR 0 364 1 20685 155 8 10 chr5 20450222 20455093 -182630439 + L1PA11 LINE L1 2680 7551 -61 218 32 32 0 chr5 20455376 20455407 -182630125 + (TC)n Simple_repeat Simple_repeat 1 32 0 517 297 36 12 chr5 20455786 20455951 -182629581 - MIR SINE MIR -59 203 35 2435 118 30 57 chr5 20455968 20456408 -182629124 + MSTA LTR MaLR 1 428 0 2138 143 31 8 chr5 20456424 20456780 -182628752 + THE1B LTR MaLR 1 364 0 387 351 30 71 chr5 20457076 20457415 -182628117 + L1MEd LINE L1 244 568 -5551 2657 168 48 5 chr5 20457738 20458298 -182627234 + L1PB4 LINE L1 5573 6156 0 791 234 15 10 chr5 20458641 20458842 -182626690 - MER45C DNA AcHobo -751 202 1 284 179 77 6 chr5 20458842 20458919 -182626613 - MER90 LTR ERV1 -526 88 1 553 278 115 86 chr5 20458920 20459291 -182626241 - HAL1 LINE L1 -1873 634 233 507 119 24 0 chr5 20459291 20459419 -182626113 + L1PB1 LINE L1 6053 6182 0 553 278 115 86 chr5 20459419 20459660 -182625872 - HAL1 LINE L1 -2274 233 1 609 264 68 0 chr5 20460304 20460452 -182625080 - MER63A DNA MER1_type 0 210 53 3289 326 130 26 chr5 20462519 20464639 -182620893 - L2 LINE L2 0 3313 863 2039 116 71 14 chr5 20464639 20464992 -182620540 + THE1C LTR MaLR 1 373 -2 3289 326 130 26 chr5 20464992 20465639 -182619893 - L2 LINE L2 -2450 863 285 394 232 101 43 chr5 20465651 20465789 -182619743 - L2 LINE L2 -1 3312 3167 1832 200 42 26 chr5 20466070 20466525 -182619007 - MLT1C LTR MaLR 0 467 6 1468 174 82 55 chr5 20466781 20467161 -182618371 + MLT1B LTR MaLR 1 390 0 216 217 0 0 chr5 20467286 20467332 -182618200 - L2 LINE L2 -5 3308 3263 637 244 167 9 chr5 20468424 20468645 -182616887 + MIR SINE MIR 2 257 -5 207 0 0 0 chr5 20469114 20469137 -182616395 + (A)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr5 20469888 20469910 -182615622 + AT_rich Low_complexity Low_complexity 1 22 0 386 340 20 7 chr5 20471704 20471851 -182613681 + MER5A DNA MER1_type 40 188 -1 659 315 37 42 chr5 20471967 20472370 -182613162 + L2 LINE L2 2544 2944 -370 565 286 172 54 chr5 20473612 20474097 -182611435 - MLT1H1 LTR MaLR 0 555 16 413 289 78 94 chr5 20474107 20474480 -182611052 + L2 LINE L2 2946 3312 -1 180 333 14 0 chr5 20474916 20474988 -182610544 - MIR SINE MIR -1 261 189 27 73 0 0 chr5 20476260 20476315 -182609217 + AT_rich Low_complexity Low_complexity 1 55 0 5858 149 13 24 chr5 20476588 20477729 -182607803 + L1MA4 LINE L1 5160 6296 -4 23 33 0 0 chr5 20477729 20477759 -182607773 + AT_rich Low_complexity Low_complexity 1 30 0 1042 186 11 0 chr5 20479067 20479250 -182606282 - MER58A DNA MER1_type 0 224 40 5064 158 12 63 chr5 20479250 20480075 -182605457 + L1MA9 LINE L1 5117 5873 -439 2616 146 14 9 chr5 20480075 20480501 -182605031 + MSTA LTR MaLR 1 428 0 5064 158 12 63 chr5 20480501 20480896 -182604636 + L1MA9 LINE L1 5873 6287 -25 1839 164 37 11 chr5 20481664 20482018 -182603514 + L1MC1 LINE L1 5968 6330 -3 1191 251 152 15 chr5 20482220 20482736 -182602796 + MLT1G1 LTR MaLR 5 557 -10 22 0 0 0 chr5 20483022 20483044 -182602488 + AT_rich Low_complexity Low_complexity 1 22 0 273 145 14 29 chr5 20484005 20484074 -182601458 + CT-rich Low_complexity Low_complexity 1 68 0 423 309 104 31 chr5 20484150 20484438 -182601094 - MLT1L LTR MaLR -157 458 150 270 394 32 36 chr5 20484554 20485084 -182600448 + L2 LINE L2 2048 2575 -739 321 298 41 8 chr5 20485183 20485304 -182600228 + L2 LINE L2 3159 3283 -30 181 365 14 0 chr5 20485641 20485715 -182599817 + MIR3 SINE MIR 133 207 -1 308 281 243 29 chr5 20486362 20486525 -182599007 - MIR3 SINE MIR -66 142 7 534 316 73 66 chr5 20486835 20487685 -182597847 + L1MEc LINE L1 22 877 -5519 591 284 64 56 chr5 20487795 20488168 -182597364 + L1MEc LINE L1 1438 1813 -4583 201 154 0 0 chr5 20488230 20488269 -182597263 + T-rich Low_complexity Low_complexity 2 40 0 1769 251 139 9 chr5 20488296 20489214 -182596318 + L1MEc LINE L1 2623 3660 -2555 2258 126 0 3 chr5 20489267 20489576 -182595956 - AluSc SINE Alu -1 308 1 819 236 219 0 chr5 20489858 20490168 -182595364 + L2 LINE L2 1735 2112 -1202 317 212 64 136 chr5 20490178 20490316 -182595216 + MER112 DNA MER1_type 40 156 -104 5201 146 19 36 chr5 20490316 20491235 -182594297 - MER4D LTR ERV1 0 903 1 317 212 64 136 chr5 20491235 20491332 -182594200 + MER112 DNA MER1_type 156 258 -2 1726 315 134 10 chr5 20491336 20492391 -182593141 + L2 LINE L2 2118 3311 -2 2827 97 2 15 chr5 20492408 20492810 -182592722 + MSTA-int LTR MaLR 1184 1580 0 1473 153 216 46 chr5 20492810 20493176 -182592356 + MSTA LTR MaLR 1 428 0 314 310 138 76 chr5 20493556 20493953 -182591579 - L2 LINE L2 -1 3271 2850 315 335 102 42 chr5 20494078 20494559 -182590973 - L2 LINE L2 -665 2649 2140 303 206 55 0 chr5 20495112 20495185 -182590347 + MER69 DNA AcHobo 2450 2526 0 21 82 0 0 chr5 20495222 20495271 -182590261 + AT_rich Low_complexity Low_complexity 1 49 0 2059 120 0 0 chr5 20495709 20496000 -182589532 - AluSx SINE Alu -9 303 13 498 99 0 0 chr5 20496252 20496323 -182589209 + Alu SINE Alu 233 303 -6 320 286 122 0 chr5 20496578 20496676 -182588856 + MIR SINE MIR 37 146 -62 370 283 101 44 chr5 20497221 20497380 -182588152 - MIR3 SINE MIR -20 188 21 309 265 82 41 chr5 20498282 20498380 -182587152 + MIR SINE MIR 42 143 -65 267 191 103 0 chr5 20499030 20499098 -182586434 + L2 LINE L2 3221 3295 -18 200 246 88 35 chr5 20499806 20499863 -182585669 + MIR SINE MIR 84 143 -65 554 175 103 0 chr5 20500168 20500294 -182585238 - MER69 DNA AcHobo -5 2521 2383 290 279 174 75 chr5 20500406 20500567 -182584965 - MER5A DNA MER1_type 0 189 13 1998 233 100 50 chr5 20500717 20500888 -182584644 + Charlie2 DNA MER1_type 1858 2019 -843 1588 181 28 21 chr5 20500888 20501175 -182584357 + AluJo SINE Alu 1 289 -23 1998 233 100 50 chr5 20501175 20501272 -182584260 + Charlie2 DNA MER1_type 2019 2110 -752 1903 86 12 0 chr5 20501272 20501528 -182584004 - L1PA11 LINE L1 -5 6169 5911 1998 233 100 50 chr5 20501528 20502215 -182583317 + Charlie2 DNA MER1_type 2110 2862 0 1523 185 52 37 chr5 20502396 20502796 -182582736 - MLT1C LTR MaLR -2 388 1 537 305 80 25 chr5 20502812 20503324 -182582208 + L2 LINE L2 2005 2611 -703 191 278 37 0 chr5 20503326 20503380 -182582152 + L2 LINE L2 2756 2811 -503 1147 254 27 19 chr5 20503381 20503755 -182581777 + LTR37B LTR ERV1 77 453 -15 2027 125 3 22 chr5 20503898 20504253 -182581279 - AluSx SINE Alu 0 349 1 223 209 0 0 chr5 20503916 20504270 -182581262 + CT-rich Low_complexity Low_complexity 2 44 0 1424 126 22 37 chr5 20504998 20505269 -182580263 + L1MA8 LINE L1 6020 6286 -5 269 203 16 16 chr5 20505762 20505826 -182579706 + MER31-int LTR ERV1 3400 3463 -1473 915 229 30 60 chr5 20506142 20506274 -182579258 + MER99 DNA DNA 569 691 -137 2045 141 7 0 chr5 20506274 20506572 -182578960 - AluSx SINE Alu -11 301 2 915 229 30 60 chr5 20506572 20506706 -182578826 + MER99 DNA DNA 691 827 -1 1416 191 47 42 chr5 20506707 20507110 -182578422 + LTR37B LTR ERV1 57 461 -7 193 337 50 30 chr5 20507201 20507302 -182578230 + L2 LINE L2 3151 3253 -19 7462 86 16 6 chr5 20507510 20508662 -182576870 + L1MA1 LINE L1 5141 6302 0 365 244 144 82 chr5 20508984 20509352 -182576180 + MER110 LTR ERV1 80 440 -51 1031 233 0 0 chr5 20510278 20510484 -182575048 - MER58A DNA MER1_type 0 224 19 26 0 0 0 chr5 20510989 20511015 -182574517 + AT_rich Low_complexity Low_complexity 1 26 0 885 132 0 7 chr5 20511960 20512096 -182573436 + MLT2B2 LTR ERVL 5 139 -376 641 203 0 51 chr5 20512099 20512217 -182573315 + FLAM_A SINE Alu 12 123 -19 * 1119 204 21 38 chr5 20512211 20512490 -182573042 + MLT2B1 LTR ERVL 132 457 -63 1977 177 32 6 chr5 20512490 20512829 -182572703 + MER7A DNA MER2_type 1 346 0 1119 204 21 38 chr5 20512829 20512891 -182572641 + MLT2B1 LTR ERVL 457 519 -1 9696 26 10 206 chr5 20513245 20514970 -182570562 - SVA Other Other 0 1386 1 4202 55 19 21 chr5 20515178 20515745 -182569787 - SVA Other Other -820 566 1 226 253 34 79 chr5 20515749 20515927 -182569605 - MER97c DNA MER1_type? -27 1063 894 1330 224 55 42 chr5 20516024 20516176 -182569356 + MLT1C LTR MaLR 84 233 -234 3561 185 136 22 chr5 20516176 20516917 -182568615 + LTR1B LTR ERV1 1 826 0 1330 224 55 42 chr5 20516917 20517143 -182568389 + MLT1C LTR MaLR 233 467 0 312 278 19 9 chr5 20517143 20517250 -182568282 - MER97c DNA MER1_type? -221 869 762 2145 205 148 61 chr5 20517530 20518280 -182567252 - LTR1B LTR ERV1 -2 824 10 2182 252 39 22 chr5 20518359 20518954 -182566578 - MER97c DNA MER1_type? -485 605 1 1579 161 61 21 chr5 20518985 20519366 -182566166 - MLT1C LTR MaLR 0 390 1 287 272 49 12 chr5 20520251 20520356 -182565176 - MIR SINE MIR -90 118 9 299 298 8 50 chr5 20522478 20522599 -182562933 + MLT1J LTR MaLR 18 133 -378 521 125 0 12 chr5 20522611 20522691 -182562841 - MSTA LTR MaLR 0 428 350 760 119 0 10 chr5 20522692 20522793 -182562739 - AluSg SINE Alu -209 101 2 1804 89 4 0 chr5 20522795 20523031 -182562501 - THE1A LTR MaLR -118 237 1 1046 158 0 12 chr5 20523191 20523355 -182562177 + FRAM SINE Alu 3 164 -2 475 232 114 38 chr5 20523665 20523876 -182561656 - L1MC5 LINE L1 -35 7926 7700 1518 96 9 32 chr5 20523880 20524098 -182561434 + AluSp SINE Alu 90 302 -11 661 296 108 76 chr5 20524515 20525064 -182560468 - L2 LINE L2 0 3313 2738 1644 281 101 102 chr5 20525075 20526870 -182558662 - L2 LINE L2 -729 2585 793 562 270 8 0 chr5 20526879 20527005 -182558527 + MER33 DNA MER1_type 1 127 -197 960 304 44 44 chr5 20527902 20528353 -182557179 - L2 LINE L2 0 3313 2863 1287 208 38 58 chr5 20528386 20528427 -182557105 + MER96B DNA MER1_type? 25 65 -352 8043 32 0 1 chr5 20528427 20529328 -182556204 + L1PA4 LINE L1 5254 6153 -2 1287 208 38 58 chr5 20529328 20529686 -182555846 + MER96B DNA MER1_type? 65 416 -1 5180 191 54 20 chr5 20529724 20530826 -182554706 - L1MC3 LINE L1 0 7785 6646 27 29 0 0 chr5 20530910 20530944 -182554588 + AT_rich Low_complexity Low_complexity 1 34 0 201 196 0 0 chr5 20531208 20531254 -182554278 + CT-rich Low_complexity Low_complexity 4 49 0 1105 158 42 35 chr5 20531357 20531617 -182553915 + MER65A-int LTR ERV1 5419 5680 -651 1541 250 52 29 chr5 20531624 20532104 -182553428 + MER65A-int LTR ERV1 4381 4871 0 1575 209 85 40 chr5 20532104 20532526 -182553006 + MER65A LTR ERV1 1 441 -4 894 328 87 12 chr5 20532562 20533111 -182552421 + L2 LINE L2 2714 3301 -12 372 43 0 0 chr5 20533242 20533288 -182552244 + (CA)n Simple_repeat Simple_repeat 2 47 0 206 192 19 0 chr5 20533293 20533345 -182552187 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 7296 206 10 11 chr5 20533746 20535298 -182550234 - L1P LINE L1 -2583 3563 2013 9004 172 13 21 chr5 20535301 20537800 -182547732 + L1PA13 LINE L1 3620 6159 -4 230 79 0 26 chr5 20537830 20537868 -182547664 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 268 330 146 0 chr5 20539023 20539126 -182546406 - L2 LINE L2 -5 3308 3191 1232 224 149 17 chr5 20539464 20539866 -182545666 + L1MC4 LINE L1 7438 7892 -150 1951 173 35 3 chr5 20539911 20540253 -182545279 - MLT2C2 LTR ERVL -111 353 1 279 314 57 0 chr5 20540299 20540404 -182545128 - L2 LINE L2 -924 2390 2280 308 282 7 45 chr5 20540753 20540839 -182544693 + MIR SINE MIR 66 141 -121 2426 103 0 0 chr5 20540839 20541151 -182544381 + AluSq SINE Alu 1 312 -1 308 282 7 45 chr5 20541151 20541215 -182544317 + MIR SINE MIR 141 206 -56 2512 64 0 0 chr5 20541279 20541576 -182543956 + AluY SINE Alu 1 297 -14 507 182 101 0 chr5 20542277 20542376 -182543156 - L2 LINE L2 -4 3309 3201 3639 169 13 2 chr5 20542585 20543188 -182542344 - MER72 LTR ERV1 -22 700 91 25 0 0 0 chr5 20543572 20543597 -182541935 + AT_rich Low_complexity Low_complexity 1 25 0 180 77 0 0 chr5 20543735 20543761 -182541771 + (CA)n Simple_repeat Simple_repeat 2 27 0 323 398 98 4 chr5 20543837 20544101 -182541431 - L2 LINE L2 -559 2755 2467 186 274 53 95 chr5 20545212 20545307 -182540225 - MER5A DNA MER1_type -7 182 92 184 271 51 34 chr5 20546432 20546491 -182539041 + MIR3 SINE MIR 118 177 -31 24 0 0 0 chr5 20546553 20546577 -182538955 + AT_rich Low_complexity Low_complexity 1 24 0 3832 134 4 11 chr5 20547005 20547536 -182537996 - MER1A DNA MER1_type 0 527 1 197 301 68 80 chr5 20547660 20547836 -182537696 + L3b LINE CR1 1322 1495 -88 222 37 0 0 chr5 20547837 20547864 -182537668 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 216 254 91 0 chr5 20548181 20548236 -182537296 + L3 LINE CR1 1425 1484 -93 210 37 0 0 chr5 20549713 20549740 -182535792 + (TG)n Simple_repeat Simple_repeat 1 27 0 295 301 24 0 chr5 20550333 20550416 -182535116 - L2 LINE L2 -4 3309 3225 2241 109 3 10 chr5 20550421 20550732 -182534800 + AluSx SINE Alu 1 309 -3 231 266 0 0 chr5 20550775 20550839 -182534693 - L2 LINE L2 -83 3230 3167 860 299 12 8 chr5 20550860 20551114 -182534418 + MIR SINE MIR 8 262 0 423 298 103 4 chr5 20551123 20551456 -182534076 - L2 LINE L2 -167 3146 2781 183 170 75 38 chr5 20551798 20551851 -182533681 + MIR SINE MIR 136 190 -72 550 271 54 12 chr5 20552226 20552392 -182533140 - MER5B DNA MER1_type 0 178 6 521 202 101 17 chr5 20552717 20552836 -182532696 - L2 LINE L2 -3 3310 3182 787 259 79 40 chr5 20552945 20553366 -182532166 + LTR33 LTR ERVL 49 518 -3 286 276 0 0 chr5 20554227 20554285 -182531247 - MER81 DNA DNA -2 112 55 234 247 236 0 chr5 20554963 20555052 -182530480 - MER5B DNA MER1_type -7 171 62 1105 64 0 14 chr5 20555081 20555222 -182530310 - Alu SINE Alu -7 304 166 242 225 84 0 chr5 20555351 20555422 -182530110 - MIR3 SINE MIR -19 189 113 182 150 25 0 chr5 20556060 20556100 -182529432 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 348 127 0 0 chr5 20556615 20556670 -182528862 + (TA)n Simple_repeat Simple_repeat 2 56 0 267 152 0 0 chr5 20556672 20556718 -182528814 - LTR66 LTR ERVL -171 439 394 473 315 289 3 chr5 20557630 20557941 -182527591 - L2 LINE L2 -6 3307 2908 2855 261 194 24 chr5 20558697 20558931 -182526601 + L2 LINE L2 601 794 -2520 2321 113 0 0 chr5 20558931 20559231 -182526301 - AluSx SINE Alu -12 300 1 2855 261 194 24 chr5 20559231 20560365 -182525167 + L2 LINE L2 794 2201 -1113 1212 167 35 18 chr5 20560367 20560595 -182524937 - LOR1a LTR ERV1 0 497 266 2644 105 32 2 chr5 20560607 20561007 -182524525 - LOR1-int LTR ERV1 -4763 3357 2946 1826 186 0 3 chr5 20561007 20561314 -182524218 + LOR1a LTR ERV1 192 497 0 712 161 42 14 chr5 20561337 20561480 -182524052 - Charlie4 DNA MER1_type 0 1961 1815 1161 297 144 19 chr5 20561652 20562427 -182523105 + L2 LINE L2 2367 3242 -71 2001 157 69 5 chr5 20562427 20562803 -182522729 + MSTA LTR MaLR 1 400 -28 6975 54 14 22 chr5 20563118 20564092 -182521440 - L1PA8 LINE L1 -13 6159 5184 11426 98 3 6 chr5 20564095 20565814 -182519718 + L1PA8 LINE L1 3485 5198 -948 351 109 0 31 chr5 20566075 20566139 -182519393 + L1MA10 LINE L1 6225 6286 -48 442 166 18 142 chr5 20566139 20566308 -182519224 + MLT1A1 LTR MaLR 1 148 -217 241 245 10 51 chr5 20566426 20566524 -182519008 + LTR55 LTR ERV 412 505 -43 * 423 268 33 55 chr5 20566513 20566524 -182519008 - MER21B LTR ERV1 -587 276 266 6305 148 11 0 chr5 20566524 20567195 -182518337 - L1PA11 LINE L1 -1 6173 5511 2272 84 14 3 chr5 20567195 20567491 -182518041 - AluY SINE Alu -12 299 1 6305 148 11 0 chr5 20567491 20568686 -182516846 - L1PA11 LINE L1 -663 5511 4282 423 268 33 55 chr5 20568686 20568857 -182516675 - MER21B LTR ERV1 -597 266 98 260 270 27 14 chr5 20568910 20568984 -182516548 - MER21B LTR ERV1 -773 90 16 2287 89 0 19 chr5 20568984 20569297 -182516235 - AluSx SINE Alu -5 307 1 198 167 0 0 chr5 20569550 20569586 -182515946 + (TG)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr5 20569977 20570007 -182515525 + (TG)n Simple_repeat Simple_repeat 2 31 0 1269 226 53 55 chr5 20570018 20570452 -182515080 + LTR47B LTR ERVL 11 443 0 445 236 18 9 chr5 20570487 20570597 -182514935 + MER34 LTR ERV1 1 111 -431 347 252 38 15 chr5 20570615 20570746 -182514786 + MER65A LTR ERV1 1 134 -311 599 221 32 25 chr5 20571180 20571407 -182514125 + MER34 LTR ERV1 273 520 -45 21 0 0 0 chr5 20571572 20571593 -182513939 + AT_rich Low_complexity Low_complexity 1 21 0 296 260 10 50 chr5 20571743 20571843 -182513689 + L1MEd LINE L1 439 534 -5585 22 0 0 0 chr5 20571855 20571877 -182513655 + AT_rich Low_complexity Low_complexity 1 22 0 227 219 207 0 chr5 20571924 20572006 -182513526 - HsTC2 DNA Tc2 -1793 105 7 476 256 135 42 chr5 20572071 20572286 -182513246 + MIR SINE MIR 9 243 -19 190 261 43 0 chr5 20572255 20572301 -182513231 + L2 LINE L2 3217 3264 -8 * 1561 177 9 47 chr5 20572608 20572925 -182512607 - AluJo SINE Alu -7 305 1 315 49 0 0 chr5 20573137 20573178 -182512354 + (CCCTAA)n Simple_repeat Simple_repeat 3 43 0 963 75 0 0 chr5 20573767 20573901 -182511631 + L1PA2 LINE L1 6022 6155 0 272 221 44 0 chr5 20573906 20573974 -182511558 - Charlie4 DNA MER1_type -1874 87 17 1681 182 48 31 chr5 20574202 20574560 -182510972 + MLT1A1 LTR MaLR 1 364 -1 263 234 32 32 chr5 20574966 20575060 -182510472 + MLT1I LTR MaLR 291 384 -25 1195 200 39 60 chr5 20575381 20575750 -182509782 + MLT1A2 LTR MaLR 11 374 0 550 303 144 5 chr5 20575979 20576174 -182509358 - MIR SINE MIR -25 237 16 2040 82 3 57 chr5 20576344 20576675 -182508857 - L1PA13 LINE L1 -2 6161 5849 256 139 292 14 chr5 20576756 20576828 -182508704 + MER39 LTR ERV1 1 92 -615 478 165 91 0 chr5 20576838 20576959 -182508573 + LTR48 LTR ERV1 177 308 -479 516 234 98 61 chr5 20576968 20577302 -182508230 + LTR48 LTR ERV1 238 774 0 544 283 58 0 chr5 20577382 20577573 -182507959 - L2 LINE L2 0 3313 3112 3939 148 21 27 chr5 20577792 20578507 -182507025 - MER50 LTR ERV1 -23 711 1 1162 214 132 82 chr5 20578947 20579279 -182506253 + MLT1E2 LTR MaLR 111 477 -149 2351 99 3 0 chr5 20579279 20579591 -182505941 - AluSp SINE Alu 0 313 1 1162 214 132 82 chr5 20579591 20579749 -182505783 + MLT1E2 LTR MaLR 477 626 0 219 239 130 33 chr5 20580266 20580358 -182505174 + MIR SINE MIR 96 196 -66 8650 24 0 0 chr5 20580394 20582178 -182503354 - L1PA3 LINE L1 -1 6154 4369 30480 39 34 5 chr5 20582278 20586299 -182499233 - L1PA3 LINE L1 -2007 4139 2 1013 188 79 4 chr5 20586311 20586577 -182498955 + Charlie4a DNA MER1_type 70 355 -153 22 35 0 0 chr5 20586583 20586612 -182498920 + AT_rich Low_complexity Low_complexity 1 29 0 7843 203 86 18 chr5 20586612 20588386 -182497146 - L1MC1 LINE L1 -13 6389 4737 1123 214 78 42 chr5 20588386 20588718 -182496814 - MER2 DNA MER2_type 0 344 1 7843 203 86 18 chr5 20588718 20590607 -182494925 - L1MC1 LINE L1 -1665 4737 2461 1476 116 14 0 chr5 20590607 20590814 -182494718 - AluSx SINE Alu -15 297 88 471 70 0 0 chr5 20590814 20590885 -182494647 - L1MCa LINE L1 -4430 1996 1926 653 117 48 19 chr5 20590910 20591013 -182494519 - AluSx SINE Alu -205 108 3 2072 197 35 38 chr5 20591015 20591135 -182494397 - L1MC1 LINE L1 -3888 2508 2389 1777 177 14 3 chr5 20591135 20591429 -182494103 - AluJb SINE Alu -15 297 1 2072 197 35 38 chr5 20591429 20592035 -182493497 - L1MC1 LINE L1 -4007 2389 1820 2107 123 6 19 chr5 20592037 20592353 -182493179 + AluSx SINE Alu 1 312 0 1995 118 0 0 chr5 20592374 20592653 -182492879 + AluY SINE Alu 1 279 -32 2405 67 0 17 chr5 20592787 20593085 -182492447 + AluY SINE Alu 1 293 -18 628 76 0 0 chr5 20593658 20593750 -182491782 - L1PB1 LINE L1 0 6151 6060 2178 165 48 10 chr5 20593751 20594150 -182491382 + MLT2D LTR ERVL 1 414 0 267 261 59 17 chr5 20595654 20595773 -182489759 + L1ME LINE L1 4069 4192 -1954 22 70 0 0 chr5 20595783 20595826 -182489706 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr5 20595863 20595885 -182489647 + AT_rich Low_complexity Low_complexity 1 22 0 358 207 193 0 chr5 20595977 20596117 -182489415 + L1ME LINE L1 4483 4649 -1497 390 291 106 20 chr5 20596132 20596386 -182489146 + L1ME LINE L1 4905 5180 -966 479 275 72 48 chr5 20596591 20596965 -182488567 + L1ME LINE L1 5309 5691 -471 2350 146 24 16 chr5 20596993 20597417 -182488115 + MSTA LTR MaLR 2 428 0 259 219 14 0 chr5 20597478 20597551 -182487981 + MER82 DNA MER2_type 127 200 -453 1237 151 75 0 chr5 20597553 20597792 -182487740 + Tigger1 DNA MER2_type 3 259 -2159 528 221 8 25 chr5 20599087 20599209 -182486323 + MER94 DNA DNA 3 122 -12 22 0 0 0 chr5 20601119 20601141 -182484391 + AT_rich Low_complexity Low_complexity 1 22 0 734 189 47 21 chr5 20601453 20601643 -182483889 - MER20 DNA MER1_type -7 212 18 3789 155 138 7 chr5 20601729 20602459 -182483073 + LTR1B LTR ERV1 1 826 0 200 215 46 15 chr5 20602547 20602612 -182482920 - L3b LINE CR1 -197 1386 1320 415 134 98 0 chr5 20604828 20604910 -182480622 - MER34C LTR ERV1 0 585 496 1253 162 13 0 chr5 20604913 20605148 -182480384 + L1MA8 LINE L1 4817 5054 -1092 368 257 68 47 chr5 20605447 20605595 -182479937 - MIR SINE MIR -38 224 74 234 0 0 0 chr5 20606537 20606563 -182478969 + (A)n Simple_repeat Simple_repeat 1 26 0 407 223 19 0 chr5 20606926 20607029 -182478503 - Charlie4a DNA MER1_type -376 132 28 400 204 57 70 chr5 20608900 20609057 -182476475 - Charlie4 DNA MER1_type 0 1961 1807 7755 158 39 28 chr5 20609057 20610760 -182474772 + L1MCa LINE L1 1 1806 -4620 3729 147 30 4 chr5 20610864 20611739 -182473793 + L1MA8 LINE L1 5024 5912 -379 1922 190 16 13 chr5 20611739 20612123 -182473409 + MSTD LTR MaLR 1 385 -11 1799 131 31 47 chr5 20612125 20612506 -182473026 + L1MA8 LINE L1 5909 6283 -8 1647 206 42 44 chr5 20612528 20613004 -182472528 - MER34B LTR ERV1 -80 485 11 2162 247 177 13 chr5 20613014 20613974 -182471558 - L1ME3A LINE L1 -97 6073 4957 2133 119 3 6 chr5 20615272 20615583 -182469949 - AluSx SINE Alu -1 311 2 234 0 0 0 chr5 20616042 20616068 -182469464 + (TG)n Simple_repeat Simple_repeat 2 27 0 1487 206 14 3 chr5 20616068 20616360 -182469172 - MLT1A1 LTR MaLR -3 362 68 429 20 0 0 chr5 20616458 20616508 -182469024 + (TG)n Simple_repeat Simple_repeat 1 50 0 226 284 12 37 chr5 20616802 20616883 -182468649 + L2 LINE L2 3108 3186 -86 * 285 293 193 19 chr5 20616879 20617091 -182468441 - MIR SINE MIR -13 249 1 25 31 0 0 chr5 20618565 20618597 -182466935 + AT_rich Low_complexity Low_complexity 1 32 0 282 119 0 2 chr5 20618598 20618648 -182466884 + L1M3 LINE L1 5474 5522 -652 678 263 10 36 chr5 20618769 20618963 -182466569 + Charlie1a DNA MER1_type 4 192 -1263 1145 224 65 63 chr5 20618969 20619399 -182466133 + MER39 LTR ERV1 1 619 -88 4877 195 25 23 chr5 20619467 20620499 -182465033 + Charlie1a DNA MER1_type 194 1227 -228 994 186 38 113 chr5 20620504 20620822 -182464710 - L1MA7 LINE L1 -22 6290 5997 620 209 139 11 chr5 20620823 20621010 -182464522 + Charlie1a DNA MER1_type 1245 1455 0 182 300 33 17 chr5 20622070 20622130 -182463402 - MIR SINE MIR -200 62 2 273 98 0 0 chr5 20622199 20622240 -182463292 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 225 0 0 0 chr5 20622366 20622391 -182463141 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 2375 181 66 70 chr5 20622767 20623309 -182462223 - MLT1F LTR MaLR 0 542 3 281 344 91 82 chr5 20623635 20623975 -182461557 - L2 LINE L2 -105 3167 2825 827 305 82 77 chr5 20624738 20625658 -182459874 - L1MEd LINE L1 -5192 927 4 207 300 33 0 chr5 20626923 20626983 -182458549 + MIR SINE MIR 9 70 -192 2265 175 8 3 chr5 20627011 20627394 -182458138 + MLT1B LTR MaLR 6 390 0 2219 147 73 52 chr5 20627438 20627498 -182458034 - MSTB1 LTR MaLR 0 432 375 2375 97 0 3 chr5 20627498 20627806 -182457726 - AluY SINE Alu -4 307 1 2219 147 73 52 chr5 20627806 20628168 -182457364 - MSTB1 LTR MaLR -57 375 1 2749 23 0 0 chr5 20628188 20628491 -182457041 + AluYb8 SINE Alu 1 303 -15 219 36 0 0 chr5 20628491 20628519 -182457013 + (TTAA)n Simple_repeat Simple_repeat 4 31 0 21 36 0 0 chr5 20628626 20628654 -182456878 + AT_rich Low_complexity Low_complexity 1 28 0 2055 155 0 0 chr5 20632495 20632798 -182452734 + AluSx SINE Alu 1 303 -9 239 216 59 0 chr5 20633056 20633107 -182452425 - MER82 DNA MER2_type -395 258 205 2117 80 77 0 chr5 20633108 20633394 -182452138 + AluY SINE Alu 1 308 -3 1980 157 40 3 chr5 20633418 20633769 -182451763 - Tigger1 DNA MER2_type 0 2418 2055 39157 82 16 6 chr5 20633774 20639857 -182445675 - L1PA6 LINE L1 0 6154 11 4389 125 68 1 chr5 20639875 20640563 -182444969 - Tigger1 DNA MER2_type -334 2084 1351 * 6893 130 50 2 chr5 20640549 20641609 -182443923 - Tigger1 DNA MER2_type -1305 1113 3 292 219 14 0 chr5 20641611 20641684 -182443848 - MER82 DNA MER2_type -453 200 127 626 282 66 48 chr5 20641686 20641745 -182443787 - L1ME LINE L1 -396 5774 5718 2550 146 24 16 chr5 20641745 20642169 -182443363 - MSTA LTR MaLR 0 428 2 626 282 66 48 chr5 20642169 20642572 -182442960 - L1ME LINE L1 -452 5718 5309 290 245 168 34 chr5 20642676 20642974 -182442558 - L1ME LINE L1 -846 5300 4963 255 228 297 43 chr5 20643046 20643511 -182442021 - L1ME LINE L1 -1497 4649 4067 2353 168 48 10 chr5 20645014 20645413 -182440119 - MLT2D LTR ERVL 0 414 1 675 76 0 0 chr5 20645414 20645506 -182440026 + L1PB1 LINE L1 6060 6151 0 2421 71 0 14 chr5 20646079 20646376 -182439156 - AluY SINE Alu -18 293 1 2234 125 0 0 chr5 20646470 20646775 -182438757 - AluSx SINE Alu -7 305 1 214 233 0 0 chr5 20647188 20647231 -182438301 - L2 LINE L2 -2 3311 3269 1183 184 142 63 chr5 20648575 20648906 -182436626 + MLT1A1 LTR MaLR 1 357 -8 424 246 25 34 chr5 20649036 20649182 -182436350 + MIR SINE MIR 27 172 -63 230 274 17 120 chr5 20649385 20649502 -182436030 + MER5B DNA MER1_type 6 110 -68 236 109 0 22 chr5 20650355 20650401 -182435131 + (CA)n Simple_repeat Simple_repeat 2 46 0 183 156 0 0 chr5 20650403 20650435 -182435097 + (TG)n Simple_repeat Simple_repeat 1 32 0 303 335 164 7 chr5 20650630 20650782 -182434750 - MLT1L LTR MaLR -88 527 352 723 253 40 20 chr5 20651376 20651574 -182433958 - MLT1A2 LTR MaLR -16 358 157 615 202 8 0 chr5 20651666 20651785 -182433747 + MER96B DNA MER1_type? 298 417 0 21 71 0 0 chr5 20651853 20651895 -182433637 + AT_rich Low_complexity Low_complexity 1 42 0 297 320 33 53 chr5 20652985 20653135 -182432397 + MIR3 SINE MIR 30 176 -32 1613 222 57 22 chr5 20653421 20653973 -182431559 - MER90 LTR ERV1 0 614 5 811 165 256 6 chr5 20654803 20654967 -182430565 - MER7A DNA MER2_type -143 203 1 1106 187 74 37 chr5 20654973 20655272 -182430260 + L1MC5 LINE L1 7601 7910 -51 2180 95 39 0 chr5 20655274 20655559 -182429973 + AluSq SINE Alu 1 296 -17 23 0 0 0 chr5 20655569 20655592 -182429940 + AT_rich Low_complexity Low_complexity 1 23 0 267 305 153 3 chr5 20655902 20656081 -182429451 + MIR SINE MIR 4 262 0 2050 198 24 55 chr5 20656182 20656687 -182428845 - MER65B LTR ERV1 -42 489 1 2358 152 33 35 chr5 20656690 20657119 -182428413 - Tigger2a DNA MER2_type 0 434 7 306 309 72 15 chr5 20657719 20657912 -182427620 - MIR SINE MIR 0 208 5 257 128 21 0 chr5 20657984 20658031 -182427501 + GA-rich Low_complexity Low_complexity 5 52 0 25 95 0 0 chr5 20658099 20658173 -182427359 + AT_rich Low_complexity Low_complexity 1 74 0 2464 58 0 32 chr5 20658253 20658562 -182426970 - AluY SINE Alu -12 299 1 2930 76 98 5 chr5 20658749 20659159 -182426373 + LTR7 LTR ERV1 1 448 -2 17487 96 7 22 chr5 20659161 20661732 -182423800 + HERVH LTR ERV1 1 2532 -5181 1041 169 0 0 chr5 20661724 20661902 -182423630 + HERVH LTR ERV1 2810 2987 -4726 * 913 130 20 0 chr5 20661896 20662042 -182423490 + HERVH LTR ERV1 3140 3288 -4425 * 3400 113 4 8 chr5 20662034 20662537 -182422995 + HERVH LTR ERV1 3492 3992 -3721 4520 135 0 1 chr5 20662540 20663200 -182422332 + HERVH LTR ERV1 4488 5146 -2567 1349 126 17 42 chr5 20663183 20663421 -182422111 + HERVH LTR ERV1 5588 5819 -1894 * 2396 94 53 13 chr5 20663422 20663796 -182421736 + HERVH LTR ERV1 7325 7713 0 3014 71 95 5 chr5 20663796 20664207 -182421325 + LTR7 LTR ERV1 1 448 -2 680 245 37 0 chr5 20665041 20665204 -182420328 - MIR SINE MIR -38 224 56 639 189 79 31 chr5 20666069 20666196 -182419336 + FLAM_A SINE Alu 1 133 0 252 0 0 0 chr5 20666917 20666945 -182418587 + (CCCCAG)n Simple_repeat Simple_repeat 4 31 0 250 325 0 0 chr5 20667038 20667118 -182418414 - MIR SINE MIR -19 243 164 180 338 88 0 chr5 20667126 20667206 -182418326 + MIR SINE MIR 17 103 -159 875 265 111 21 chr5 20667480 20667805 -182417727 + L1MC5 LINE L1 5537 5890 -1918 23 54 0 0 chr5 20668067 20668104 -182417428 + AT_rich Low_complexity Low_complexity 1 37 0 1541 171 30 23 chr5 20668114 20668413 -182417119 + AluJb SINE Alu 1 301 -11 1960 108 90 4 chr5 20668419 20668696 -182416836 + AluSx SINE Alu 1 301 -11 2124 172 6 6 chr5 20669026 20669387 -182416145 + MLT2D LTR ERVL 1 361 -53 294 148 0 0 chr5 20669388 20669442 -182416090 + (GA)n Simple_repeat Simple_repeat 2 55 0 266 93 70 0 chr5 20669442 20669485 -182416047 + MLT2D LTR ERVL 419 464 0 252 351 92 30 chr5 20669573 20669704 -182415828 + L2 LINE L2 3128 3266 -6 207 361 37 9 chr5 20671006 20671114 -182414418 - MIR SINE MIR -149 113 3 251 232 101 0 chr5 20671115 20671184 -182414348 + L1ME LINE L1 5597 5672 -449 * 1435 209 84 134 chr5 20671177 20672230 -182413302 + L1MC5 LINE L1 6778 7765 -196 390 57 0 0 chr5 20672230 20672283 -182413249 + (TG)n Simple_repeat Simple_repeat 1 53 0 1435 209 84 134 chr5 20672283 20672437 -182413095 + L1MC5 LINE L1 7765 7925 -36 719 282 41 15 chr5 20673393 20673659 -182411873 - LTR16A LTR ERVL -5 445 173 372 267 80 17 chr5 20674225 20674401 -182411131 - HERV16 LTR ERVL -793 4971 4785 1875 112 19 0 chr5 20674414 20674682 -182410850 - AluSx SINE Alu -39 273 1 4537 118 103 78 chr5 20674777 20676215 -182409317 + pTR5 LTR ERV1 66 2438 0 870 356 6 6 chr5 20676289 20676632 -182408900 - HERV16 LTR ERVL -1114 4540 4198 1447 305 73 22 chr5 20676640 20677338 -182408194 - HERV16 LTR ERVL -2716 2280 1705 458 324 19 24 chr5 20677355 20677568 -182407964 - HERV16 LTR ERVL -3429 1567 1356 517 312 13 0 chr5 20677611 20677768 -182407764 - HERV16 LTR ERVL -3653 1343 1185 695 130 0 43 chr5 20677768 20677883 -182407649 - Tigger7 DNA MER2_type 0 2491 2382 * 3331 155 55 0 chr5 20677877 20678418 -182407114 - Tigger7 DNA MER2_type -162 571 1 1936 148 63 27 chr5 20678420 20678752 -182406780 + MER2 DNA MER2_type 1 344 0 2684 276 83 38 chr5 20678753 20679141 -182406391 - HERV16 LTR ERVL -3811 1185 816 1167 230 5 0 chr5 20679141 20679358 -182406174 - MER58A DNA MER1_type -4 220 3 2684 276 83 38 chr5 20679358 20680101 -182405431 - HERV16 LTR ERVL -4180 816 3 774 272 134 55 chr5 20680117 20680521 -182405011 - LTR16A LTR ERVL -14 436 1 374 212 10 0 chr5 20680764 20680863 -182404669 + GA-rich Low_complexity Low_complexity 4 103 0 387 0 0 0 chr5 20681681 20681724 -182403808 + (CA)n Simple_repeat Simple_repeat 2 44 0 644 272 136 17 chr5 20681984 20682285 -182403247 + MER46C DNA MER2_type 2 338 0 264 267 147 42 chr5 20682397 20682588 -182402944 - MIR SINE MIR -32 230 20 2162 214 25 23 chr5 20682703 20683218 -182402314 + Charlie1b DNA MER1_type 7 522 -1 742 270 109 0 chr5 20683218 20683429 -182402103 + MIR SINE MIR 8 241 -21 451 146 109 88 chr5 20684340 20684477 -182401055 + MIR SINE MIR 79 218 -44 805 246 218 36 chr5 20684563 20685062 -182400470 - MLT1G LTR MaLR 0 590 1 1952 120 39 0 chr5 20685228 20685511 -182400021 + AluSx SINE Alu 1 294 -18 358 266 16 14 chr5 20685889 20686026 -182399506 - MLT1J LTR MaLR -291 194 21 23 33 0 0 chr5 20686042 20686072 -182399460 + AT_rich Low_complexity Low_complexity 1 30 0 2111 104 0 0 chr5 20686636 20686904 -182398628 + AluSx SINE Alu 35 302 -10 253 197 171 13 chr5 20686939 20687015 -182398517 + MIR SINE MIR 82 169 -93 2468 75 0 0 chr5 20687314 20687619 -182397913 - AluY SINE Alu -6 305 1 478 90 0 0 chr5 20687784 20687851 -182397681 + L1MA1 LINE L1 6232 6298 -4 1769 168 3 10 chr5 20688498 20688796 -182396736 + AluJo SINE Alu 1 296 -16 234 253 259 46 chr5 20689534 20689708 -182395824 - MIR SINE MIR -18 244 34 362 226 156 52 chr5 20691245 20691457 -182394075 - MIR SINE MIR -28 234 1 245 100 20 0 chr5 20692297 20692347 -182393185 + (TA)n Simple_repeat Simple_repeat 2 52 0 1353 152 43 5 chr5 20692454 20692665 -182392867 + MER20 DNA MER1_type 1 219 0 2533 65 0 3 chr5 20692950 20693258 -182392274 + AluY SINE Alu 1 307 -4 833 224 36 18 chr5 20693396 20693615 -182391917 + MER58A DNA MER1_type 2 224 0 197 263 26 118 chr5 20693687 20693763 -182391769 + MER5A DNA MER1_type 1 69 -120 905 153 71 53 chr5 20694840 20695010 -182390522 - AluJb SINE Alu -7 305 133 257 222 181 0 chr5 20696499 20696571 -182388961 + MIR SINE MIR 63 147 -115 700 192 46 91 chr5 20697697 20697916 -182387616 + MER3 DNA MER1_type 1 209 0 2032 249 107 29 chr5 20698008 20698744 -182386788 + L1ME3A LINE L1 5288 6123 -47 1809 148 80 19 chr5 20698744 20699068 -182386464 + MER2 DNA MER2_type 1 344 0 2032 249 107 29 chr5 20699068 20699115 -182386417 + L1ME3A LINE L1 6123 6165 -5 279 233 41 41 chr5 20699182 20699255 -182386277 + MIR SINE MIR 184 256 -6 721 212 0 29 chr5 20699313 20699450 -182386082 - FLAM_A SINE Alu 0 133 1 2174 271 117 16 chr5 20699683 20700670 -182384862 - L2 LINE L2 -106 3207 2119 1627 183 39 3 chr5 20701127 20701412 -182384120 + AluJb SINE Alu 1 295 -17 1619 188 58 50 chr5 20702891 20703252 -182382280 + MLT1A1 LTR MaLR 2 365 0 269 245 53 21 chr5 20703532 20703626 -182381906 - L2 LINE L2 -4 3309 3213 933 215 88 8 chr5 20705113 20705364 -182380168 - MER33 DNA MER1_type -13 311 41 2277 84 0 7 chr5 20705419 20705718 -182379814 + AluSx SINE Alu 1 297 -15 305 300 114 64 chr5 20705858 20706202 -182379330 + L2 LINE L2 2736 3102 -211 1471 215 217 25 chr5 20706212 20706649 -182378883 - MLT1F LTR MaLR 0 542 22 435 228 0 0 chr5 20706706 20706785 -182378747 - MER81 DNA DNA -34 80 2 279 224 214 10 chr5 20706809 20706907 -182378625 + L2 LINE L2 3192 3309 -4 207 0 0 0 chr5 20707588 20707611 -182377921 + (T)n Simple_repeat Simple_repeat 1 23 0 2387 142 83 0 chr5 20708255 20708650 -182376882 + MSTA LTR MaLR 1 428 0 257 251 133 94 chr5 20709373 20709524 -182376008 + MIR SINE MIR 3 160 -48 1715 199 53 3 chr5 20709545 20709867 -182375665 - MER58B DNA MER1_type 0 341 4 395 328 23 0 chr5 20709872 20710003 -182375529 - MIR SINE MIR -66 196 63 216 135 0 0 chr5 20713402 20713439 -182372093 + (T)n Simple_repeat Simple_repeat 1 37 0 383 331 55 44 chr5 20714840 20715021 -182370511 - MIR3 SINE MIR -23 185 3 3127 66 37 12 chr5 20715262 20715669 -182369863 + L1PA11 LINE L1 5758 6174 0 2141 174 63 10 chr5 20715935 20716350 -182369182 - L1MB7 LINE L1 0 6184 5748 1093 161 22 0 chr5 20717044 20717224 -182368308 + MER5A DNA MER1_type 2 185 -4 288 264 208 0 chr5 20718168 20718293 -182367239 + MIR SINE MIR 80 230 -32 563 271 0 12 chr5 20718697 20718722 -182366810 - L1MA10 LINE L1 -3 6331 6307 2551 216 78 45 chr5 20718722 20719426 -182366106 - L1ME1 LINE L1 -19 6147 5421 348 352 164 30 chr5 20722279 20722682 -182362850 - L2 LINE L2 -9 3263 2807 280 208 59 79 chr5 20723120 20723221 -182362311 - L2 LINE L2 0 3313 3215 22 0 0 0 chr5 20723433 20723455 -182362077 + AT_rich Low_complexity Low_complexity 1 22 0 559 123 0 0 chr5 20724133 20724206 -182361326 - AluJ/FLAM SINE Alu -233 79 7 279 312 172 19 chr5 20725219 20725376 -182360156 - MIR3 SINE MIR -5 203 23 333 239 84 35 chr5 20726724 20726866 -182358666 - MER5A DNA MER1_type -40 149 1 2210 220 70 42 chr5 20726924 20727546 -182357986 + L1MEc LINE L1 35 679 -5717 2391 91 0 3 chr5 20727546 20727855 -182357677 + AluSc SINE Alu 1 308 -1 2210 220 70 42 chr5 20727855 20727899 -182357633 + L1MEc LINE L1 679 720 -5676 23 0 0 0 chr5 20728714 20728737 -182356795 + AT_rich Low_complexity Low_complexity 1 23 0 420 251 0 26 chr5 20729322 20729443 -182356089 - MIR SINE MIR -69 193 77 227 286 0 0 chr5 20729815 20729864 -182355668 - L2 LINE L2 -14 3258 3210 201 304 179 0 chr5 20730085 20730197 -182355335 + L2 LINE L2 3178 3309 -4 826 182 0 0 chr5 20730480 20730612 -182354920 + FLAM_C SINE Alu 1 132 -1 333 0 0 0 chr5 20730938 20730975 -182354557 + (TC)n Simple_repeat Simple_repeat 1 37 0 189 0 0 0 chr5 20730974 20730995 -182354537 + (CA)n Simple_repeat Simple_repeat 1 21 0 * 21 0 0 0 chr5 20732984 20733005 -182352527 + AT_rich Low_complexity Low_complexity 1 21 0 2909 103 31 10 chr5 20733085 20733502 -182352030 + MSTA LTR MaLR 1 426 -2 4951 161 41 11 chr5 20733504 20734365 -182351167 + MSTA-int LTR MaLR 1 887 -764 1575 74 0 0 chr5 20734365 20734555 -182350977 + AluY SINE Alu 104 293 -18 1235 273 84 18 chr5 20734978 20735417 -182350115 - MLT1J LTR MaLR -43 468 1 806 196 116 6 chr5 20735560 20735733 -182349799 - MER58A DNA MER1_type -23 201 10 445 254 95 0 chr5 20735845 20735971 -182349561 - MIR SINE MIR -12 250 113 290 221 90 41 chr5 20736465 20736587 -182348945 - MER117 DNA MER1_type -51 146 19 4257 119 53 25 chr5 20736888 20737173 -182348359 - Tigger3(Golem) DNA MER2_type 0 3029 2754 2089 132 3 0 chr5 20737173 20737469 -182348063 + AluJb SINE Alu 1 297 -15 4257 119 53 25 chr5 20737469 20737913 -182347619 - Tigger3(Golem) DNA MER2_type -275 2754 2279 467 202 149 0 chr5 20737905 20737999 -182347533 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 724 260 20 59 chr5 20739858 20740112 -182345420 - MIR SINE MIR -5 257 14 2050 133 0 7 chr5 20740264 20740587 -182344945 - AluSx SINE Alu 0 321 1 24 32 0 0 chr5 20740665 20740696 -182344836 + AT_rich Low_complexity Low_complexity 1 31 0 2488 64 0 7 chr5 20740702 20741000 -182344532 - AluY SINE Alu -15 296 1 460 250 72 7 chr5 20741030 20741182 -182344350 + MLT1H1 LTR MaLR 2 163 -392 233 248 138 18 chr5 20741206 20741315 -182344217 + L1ME LINE L1 5785 5906 -215 2298 88 16 7 chr5 20742130 20742435 -182343097 + AluSg1 SINE Alu 1 308 -1 2933 80 8 0 chr5 20742637 20743000 -182342532 - L1PA10 LINE L1 -4 6164 5799 253 357 0 0 chr5 20743360 20743458 -182342074 - MIR SINE MIR -1 261 164 180 338 88 0 chr5 20743466 20743546 -182341986 + MIR SINE MIR 17 103 -159 866 268 111 21 chr5 20743820 20744145 -182341387 + L1MC4a LINE L1 5537 5890 -1918 23 54 0 0 chr5 20744407 20744444 -182341088 + AT_rich Low_complexity Low_complexity 1 37 0 888 172 30 86 chr5 20744454 20744722 -182340810 + AluJo SINE Alu 1 253 -59 180 0 0 0 chr5 20744763 20744783 -182340749 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 194 234 181 21 chr5 20746351 20746445 -182339087 + L2 LINE L2 3136 3244 -28 817 149 32 4 chr5 20747394 20747616 -182337916 - AluJb SINE Alu -1 311 2 1832 144 9 41 chr5 20750648 20750968 -182334564 + AluJb SINE Alu 2 311 -1 2220 114 0 40 chr5 20751440 20751765 -182333767 + AluSx SINE Alu 1 312 0 2457 204 2 2 chr5 20752038 20752454 -182333078 + MER47B DNA MER2_type 1 416 -2 1880 143 199 6 chr5 20752565 20752922 -182332610 - MSTB LTR MaLR 0 426 1 367 240 31 21 chr5 20753696 20753792 -182331740 + MLT1J LTR MaLR 82 178 -333 1056 212 25 17 chr5 20753808 20754049 -182331483 + MER57-int LTR ERV1 4 246 -7291 572 163 54 16 chr5 20754693 20754822 -182330710 + MER57-int LTR ERV1 302 435 -4501 2951 87 3 0 chr5 20755469 20755838 -182329694 - L1PB1 LINE L1 0 6151 5782 300 97 48 0 chr5 20755838 20755900 -182329632 + (TA)n Simple_repeat Simple_repeat 2 66 0 2085 81 0 0 chr5 20755902 20756173 -182329359 - L1PB1 LINE L1 -360 5791 5521 438 304 22 27 chr5 20757334 20757518 -182328014 + MER5A DNA MER1_type 1 183 -6 804 191 0 7 chr5 20757754 20757895 -182327637 + FLAM_C SINE Alu 2 141 -2 186 266 138 75 chr5 20758253 20758347 -182327185 + L2 LINE L2 3127 3226 -46 274 217 89 72 chr5 20758617 20758797 -182326735 - Charlie7 DNA MER1_type -9 2603 2421 279 240 146 0 chr5 20758797 20758893 -182326639 + L1MC/D LINE L1 5714 5823 -1985 330 189 25 8 chr5 20758983 20759230 -182326302 + (TA)n Simple_repeat Simple_repeat 1 251 0 275 250 62 0 chr5 20759260 20759356 -182326176 + GA-rich Low_complexity Low_complexity 3 104 0 180 264 0 57 chr5 20759655 20759708 -182325824 - L2 LINE L2 -80 3192 3143 2217 99 0 3 chr5 20761241 20761563 -182323969 - AluSg SINE Alu 0 310 1 245 130 0 0 chr5 20761600 20761646 -182323886 - MADE1 DNA Mariner 0 80 35 25 0 0 0 chr5 20761646 20761671 -182323861 + AT_rich Low_complexity Low_complexity 1 25 0 1707 191 33 3 chr5 20763657 20763960 -182321572 + AluJo SINE Alu 1 312 0 204 200 0 0 chr5 20763960 20764005 -182321527 + GA-rich Low_complexity Low_complexity 2 46 0 1596 233 76 42 chr5 20764007 20764557 -182320975 - L1MD3 LINE L1 -23 7972 7404 348 204 0 139 chr5 20764557 20764665 -182320867 - MLT1F1 LTR MaLR -442 125 33 362 187 73 107 chr5 20764684 20764834 -182320698 - L1MD3 LINE L1 -903 7092 6948 322 247 138 122 chr5 20765800 20766335 -182319197 - L1M2 LINE L1 -5452 1397 773 1758 187 42 79 chr5 20766696 20767124 -182318408 - MLT2D LTR ERVL -2 412 1 193 200 17 33 chr5 20767636 20767696 -182317836 - MIR SINE MIR -26 236 178 947 291 140 6 chr5 20767798 20768162 -182317370 + LTR16A LTR ERVL 26 438 -12 416 223 11 0 chr5 20768184 20768278 -182317254 - MIR SINE MIR -156 106 12 2564 68 0 0 chr5 20768788 20769096 -182316436 - AluY SINE Alu -3 308 1 618 254 14 0 chr5 20769747 20769889 -182315643 - MER58B DNA MER1_type 0 341 198 21 36 0 0 chr5 20770231 20770259 -182315273 + AT_rich Low_complexity Low_complexity 1 28 0 338 191 169 0 chr5 20771042 20771131 -182314401 + LTR16A LTR ERVL 342 445 -5 681 223 32 27 chr5 20771289 20771477 -182314055 + MIR SINE MIR 27 215 -47 2111 102 39 0 chr5 20771578 20771862 -182313670 + AluSx SINE Alu 1 295 -17 210 222 16 32 chr5 20771953 20772016 -182313516 + GA-rich Low_complexity Low_complexity 3 64 0 341 268 134 30 chr5 20772108 20772272 -182313260 - MIR SINE MIR -22 240 60 193 330 128 34 chr5 20772368 20772547 -182312985 - L2 LINE L2 -4 3268 3073 2042 87 0 4 chr5 20773231 20773485 -182312047 + AluSg SINE Alu 1 253 -57 2483 48 10 0 chr5 20774038 20774329 -182311203 - AluY SINE Alu -17 294 1 773 300 185 13 chr5 20774637 20775091 -182310441 - LTR67 LTR ERVL -10 547 16 528 168 72 32 chr5 20775154 20775279 -182310253 + FLAM_C SINE Alu 1 130 -3 414 285 31 15 chr5 20775864 20775994 -182309538 - L2 LINE L2 0 3272 3141 183 343 85 20 chr5 20778113 20778314 -182307218 - MIR SINE MIR -20 242 29 1435 127 5 0 chr5 20778486 20778683 -182306849 + AluSg/x SINE Alu 85 282 -30 297 243 135 9 chr5 20778939 20779050 -182306482 - MIR3 SINE MIR -1 207 83 346 309 8 0 chr5 20779430 20779553 -182305979 - MIR SINE MIR -29 233 110 2310 67 0 7 chr5 20779680 20779964 -182305568 - AluY SINE Alu -2 309 28 820 187 19 16 chr5 20782088 20782334 -182303198 + MLT1A1 LTR MaLR 1 365 0 2155 125 3 0 chr5 20782400 20782704 -182302828 + AluSg SINE Alu 6 310 0 628 43 22 11 chr5 20782716 20782808 -182302724 + (GGAA)n Simple_repeat Simple_repeat 2 94 0 293 310 23 0 chr5 20783008 20783067 -182302465 - L1MA10 LINE L1 -7 6327 6269 356 238 50 44 chr5 20783067 20783227 -182302305 - L1ME2 LINE L1 -57 6107 5947 3116 205 72 38 chr5 20783819 20784380 -182301152 - L1ME1 LINE L1 -5 6161 5621 2276 107 0 0 chr5 20784380 20784678 -182300854 + AluSx SINE Alu 1 298 -14 3116 205 72 38 chr5 20784678 20784957 -182300575 - L1ME1 LINE L1 -545 5621 5353 2321 108 0 0 chr5 20784957 20785262 -182300270 - AluSq SINE Alu -8 305 1 3116 205 72 38 chr5 20785262 20785804 -182299728 - L1ME1 LINE L1 -813 5353 4739 433 256 33 0 chr5 20786415 20786536 -182298996 + MIR SINE MIR 117 241 -21 198 0 0 0 chr5 20786562 20786584 -182298948 + (CAG)n Simple_repeat Simple_repeat 2 23 0 1710 185 3 3 chr5 20787151 20787454 -182298078 - AluJo SINE Alu -9 303 1 279 223 202 0 chr5 20789450 20789544 -182295988 + MLT1I LTR MaLR 281 393 -16 574 152 43 0 chr5 20789820 20789912 -182295620 + MLT1A2 LTR MaLR 277 372 -2 22 0 0 0 chr5 20791252 20791274 -182294258 + AT_rich Low_complexity Low_complexity 1 22 0 2015 178 123 5 chr5 20791676 20792092 -182293440 + L1MB5 LINE L1 5710 6174 0 1567 189 173 16 chr5 20792705 20793139 -182292393 - MLT1D LTR MaLR -3 502 1 435 272 34 28 chr5 20794174 20794387 -182291145 + L1ME4a LINE L1 5734 5949 -213 289 248 15 22 chr5 20794397 20794534 -182290998 + (TA)n Simple_repeat Simple_repeat 2 137 0 302 225 50 0 chr5 20795686 20795766 -182289766 - L1ME2 LINE L1 -246 5875 5792 483 298 93 54 chr5 20795842 20796141 -182289391 + L2 LINE L2 2912 3231 -82 2044 138 3 3 chr5 20796141 20796438 -182289094 - AluSx SINE Alu -15 297 1 483 298 93 54 chr5 20796438 20796524 -182289008 + L2 LINE L2 3231 3312 -1 354 243 46 33 chr5 20796553 20796705 -182288827 + L1ME4a LINE L1 5967 6120 -1 21 36 0 0 chr5 20796883 20796911 -182288621 + AT_rich Low_complexity Low_complexity 1 28 0 2390 60 10 17 chr5 20797140 20797440 -182288092 - AluY SINE Alu -7 304 7 21 36 0 0 chr5 20797552 20797580 -182287952 + AT_rich Low_complexity Low_complexity 1 28 0 2228 108 0 0 chr5 20797821 20798116 -182287416 - AluSx SINE Alu -17 295 1 693 201 136 0 chr5 20798838 20799007 -182286525 + MSTD LTR MaLR 1 192 -204 301 241 0 0 chr5 20799007 20799090 -182286442 + A-rich Low_complexity Low_complexity 1 83 0 1010 188 0 11 chr5 20799099 20799275 -182286257 + FRAM SINE Alu 1 173 -3 1104 195 39 0 chr5 20799275 20799480 -182286052 + MSTD LTR MaLR 184 396 0 2429 70 0 0 chr5 20802203 20802538 -182282994 + AluY SINE Alu 2 336 0 2421 88 3 3 chr5 20803020 20803328 -182282204 + AluSp SINE Alu 2 309 -4 2385 153 102 40 chr5 20803548 20804066 -182281466 + L1MC3 LINE L1 7218 7767 -18 1826 168 0 7 chr5 20804242 20804546 -182280986 - AluJo SINE Alu -10 302 1 261 312 73 46 chr5 20806951 20807169 -182278363 - L2 LINE L2 -4 3268 3045 206 206 0 0 chr5 20807354 20807388 -182278144 + (CA)n Simple_repeat Simple_repeat 2 35 0 1860 169 3 13 chr5 20808660 20808974 -182276558 + AluJo SINE Alu 1 311 -1 2278 103 0 17 chr5 20809260 20809562 -182275970 - AluSx SINE Alu -15 297 1 904 157 35 50 chr5 20809621 20809819 -182275713 + L1MB1 LINE L1 5942 6136 -32 210 71 0 0 chr5 20810266 20810294 -182275238 + (T)n Simple_repeat Simple_repeat 1 28 0 1582 251 75 19 chr5 20810651 20811129 -182274403 + MLT1D LTR MaLR 1 505 0 22 80 0 0 chr5 20812533 20812583 -182272949 + AT_rich Low_complexity Low_complexity 1 50 0 2277 107 0 0 chr5 20813200 20813498 -182272034 - AluSx SINE Alu -13 299 2 2533 75 3 0 chr5 20813889 20814196 -182271336 + AluSc SINE Alu 1 308 -1 2328 111 0 6 chr5 20814720 20815035 -182270497 - AluSq SINE Alu 0 313 1 208 134 15 149 chr5 20815644 20815711 -182269821 + MER5A DNA MER1_type 47 104 -85 237 204 20 0 chr5 20815733 20815782 -182269750 - L2 LINE L2 -7 3306 3257 393 296 75 0 chr5 20816126 20816285 -182269247 + MER112 DNA MER1_type 74 244 -16 814 227 85 71 chr5 20817075 20817270 -182268262 - L1MC5 LINE L1 -51 7910 7719 2305 93 0 43 chr5 20817270 20817458 -182268074 - AluSc SINE Alu 0 309 114 197 33 33 0 chr5 20817458 20817488 -182268044 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2359 60 14 0 chr5 20817488 20817770 -182267762 - AluSp SINE Alu -27 286 1 2305 93 0 43 chr5 20817770 20817903 -182267629 - AluSc SINE Alu -193 116 1 814 227 85 71 chr5 20817903 20818022 -182267510 - L1MC5 LINE L1 -242 7719 7603 213 39 0 0 chr5 20818022 20818048 -182267484 + (CA)n Simple_repeat Simple_repeat 1 26 0 814 227 85 71 chr5 20818048 20818631 -182266901 - L1MC5 LINE L1 -358 7603 6985 2261 127 30 25 chr5 20818631 20818992 -182266540 + THE1B LTR MaLR 1 363 -1 814 227 85 71 chr5 20818992 20819141 -182266391 - L1MC5 LINE L1 -976 6985 6840 484 236 139 6 chr5 20819554 20819719 -182265813 - L3 LINE CR1 -7 1570 1384 469 309 115 20 chr5 20819760 20820055 -182265477 - L2 LINE L2 -37 3235 2913 643 240 110 0 chr5 20820177 20820377 -182265155 - MIR SINE MIR -37 225 4 2827 143 22 0 chr5 20820497 20820951 -182264581 - L1MC2 LINE L1 -234 6110 5647 276 293 219 30 chr5 20820967 20821390 -182264142 - L3 LINE CR1 -608 969 423 1484 245 59 64 chr5 20821847 20822423 -182263109 - MER45C DNA AcHobo -378 575 3 400 18 35 0 chr5 20822510 20822567 -182262965 + (CA)n Simple_repeat Simple_repeat 2 60 0 180 0 0 0 chr5 20822824 20822844 -182262688 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1087 40 0 0 chr5 20822845 20822969 -182262563 - L1PA10 LINE L1 -20 6148 6025 189 237 0 0 chr5 20823278 20823316 -182262216 - L3 LINE CR1 -615 962 925 23 33 0 0 chr5 20823634 20823664 -182261868 + AT_rich Low_complexity Low_complexity 1 30 0 1565 150 0 41 chr5 20824189 20824483 -182261049 + AluSx SINE Alu 3 284 -28 24 67 0 0 chr5 20824483 20824528 -182261004 + AT_rich Low_complexity Low_complexity 1 45 0 2533 76 15 6 chr5 20824944 20825285 -182260247 + L1PB1 LINE L1 5807 6150 -1 210 281 62 0 chr5 20825303 20825367 -182260165 - MIR3 SINE MIR -1 207 140 23 68 0 0 chr5 20825381 20825425 -182260107 + AT_rich Low_complexity Low_complexity 1 44 0 279 237 52 10 chr5 20825721 20825818 -182259714 - MER104 DNA Tc2 -45 135 35 2280 161 59 5 chr5 20826602 20827007 -182258525 - MSTA LTR MaLR -1 427 1 275 322 23 11 chr5 20827484 20827571 -182257961 + MER5A DNA MER1_type 56 143 -46 191 286 0 18 chr5 20827589 20827645 -182257887 + MIR3 SINE MIR 151 205 -3 2000 158 33 19 chr5 20827738 20828098 -182257434 - MLT1A1 LTR MaLR 0 365 1 1948 191 31 13 chr5 20829103 20829486 -182256046 - MLT1B LTR MaLR 0 390 1 1768 116 54 4 chr5 20830354 20830657 -182254875 - AluSx SINE Alu 0 312 1 257 257 27 27 chr5 20831656 20831730 -182253802 - MIR SINE MIR -112 150 77 602 202 6 0 chr5 20831770 20831948 -182253584 + (CA)n Simple_repeat Simple_repeat 2 180 0 5194 132 11 5 chr5 20833207 20834012 -182251520 + L1PA14 LINE L1 5311 6120 -41 374 266 32 24 chr5 20834296 20834420 -182251112 + L2 LINE L2 3136 3260 -12 1937 122 17 3 chr5 20835435 20835729 -182249803 + AluSx SINE Alu 5 302 -10 262 229 0 0 chr5 20837066 20837114 -182248418 + MIR3 SINE MIR 112 159 -49 448 280 70 42 chr5 20838098 20838347 -182247185 + MIR SINE MIR 3 256 -6 557 271 133 57 chr5 20839014 20839434 -182246098 + L2 LINE L2 2816 3267 -5 208 272 97 29 chr5 20839464 20839567 -182245965 + L2 LINE L2 2925 3034 -238 1309 174 15 104 chr5 20839885 20840212 -182245320 + AluJb SINE Alu 1 298 -4 231 291 181 16 chr5 20840576 20840703 -182244829 - L2 LINE L2 -1 3271 3124 1901 282 133 40 chr5 20840703 20841025 -182244507 + HAL1 LINE L1 16 307 -2200 1966 98 0 0 chr5 20841025 20841290 -182244242 - AluSx SINE Alu -47 265 1 1901 282 133 40 chr5 20841290 20842074 -182243458 + HAL1 LINE L1 307 1017 -1490 1346 185 86 20 chr5 20842074 20842366 -182243166 + AluJo SINE Alu 1 311 -1 1901 282 133 40 chr5 20842366 20842379 -182243153 + HAL1 LINE L1 1017 1027 -1480 2322 97 3 0 chr5 20842379 20842688 -182242844 - AluSx SINE Alu -2 310 1 1901 282 133 40 chr5 20842688 20843196 -182242336 + HAL1 LINE L1 1027 1797 -710 427 213 184 7 chr5 20843502 20843643 -182241889 + HAL1 LINE L1 2057 2222 -285 2059 94 3 3 chr5 20843718 20844027 -182241505 + AluSp SINE Alu 1 309 0 326 257 122 8 chr5 20845218 20845366 -182240166 + MIR SINE MIR 29 192 -62 1356 193 8 89 chr5 20846601 20846995 -182238537 - MLT1A1 LTR MaLR -3 362 1 1434 291 36 16 chr5 20847928 20848368 -182237164 + L2 LINE L2 2852 3300 -13 1777 118 0 11 chr5 20848398 20848660 -182236872 + AluSx SINE Alu 45 303 -9 1176 133 6 0 chr5 20849029 20849209 -182236323 - AluSq SINE Alu -132 181 1 1883 126 3 7 chr5 20849446 20849732 -182235800 + AluSx SINE Alu 1 285 -27 318 272 22 22 chr5 20849734 20849826 -182235706 - L1MC4 LINE L1 -1338 6704 6613 183 204 0 0 chr5 20849827 20849871 -182235661 + (CATATA)n Simple_repeat Simple_repeat 6 49 0 23 33 0 0 chr5 20850307 20850337 -182235195 + AT_rich Low_complexity Low_complexity 1 30 0 2856 91 3 0 chr5 20850469 20850832 -182234700 + THE1B LTR MaLR 1 364 0 1967 124 0 3 chr5 20851419 20851709 -182233823 + AluSg SINE Alu 1 289 -21 790 144 50 29 chr5 20851714 20851853 -182233679 + FLAM_C SINE Alu 2 143 0 27 29 0 0 chr5 20852233 20852267 -182233265 + AT_rich Low_complexity Low_complexity 1 34 0 2382 67 0 0 chr5 20852401 20852699 -182232833 - AluY SINE Alu -13 298 1 2103 100 4 0 chr5 20852763 20853044 -182232488 - AluSp SINE Alu -31 282 1 22 0 0 0 chr5 20853334 20853356 -182232176 + AT_rich Low_complexity Low_complexity 1 22 0 445 264 154 55 chr5 20854181 20854595 -182230937 - L1 LINE L1 -1219 3307 2935 219 36 0 0 chr5 20854595 20854623 -182230909 + (TCCCC)n Simple_repeat Simple_repeat 4 31 0 1868 126 20 3 chr5 20854629 20854931 -182230601 - AluSx SINE Alu -5 307 1 445 264 154 55 chr5 20854931 20854942 -182230590 - L1 LINE L1 -1595 2931 876 582 260 105 0 chr5 20855758 20855939 -182229593 - MER3 DNA MER1_type -9 200 1 340 246 68 34 chr5 20855945 20856063 -182229469 + MIR SINE MIR 85 206 -56 638 206 50 22 chr5 20856661 20856841 -182228691 - MER5A DNA MER1_type -1 188 4 7227 44 14 2 chr5 20857200 20858158 -182227374 + L1PA5 LINE L1 5185 6152 -2 1198 249 57 48 chr5 20858327 20858566 -182226966 + L1ME2 LINE L1 5662 5898 -266 1938 98 0 0 chr5 20858566 20858830 -182226702 + AluSx SINE Alu 35 298 -14 1198 249 57 48 chr5 20858830 20859068 -182226464 + L1ME2 LINE L1 5898 6143 -21 29 0 0 0 chr5 20859262 20859291 -182226241 + AT_rich Low_complexity Low_complexity 1 29 0 386 257 88 41 chr5 20859665 20859836 -182225696 - L1ME3A LINE L1 -249 5921 5743 1366 249 63 34 chr5 20861033 20861592 -182223940 + L1MC4a LINE L1 5254 5828 -1980 25 51 0 0 chr5 20861824 20861863 -182223669 + AT_rich Low_complexity Low_complexity 1 39 0 2508 48 0 10 chr5 20861868 20862181 -182223351 + AluY SINE Alu 1 310 -1 21 0 0 0 chr5 20863337 20863358 -182222174 + GC_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr5 20863523 20863549 -182221983 + GC_rich Low_complexity Low_complexity 1 26 0 243 250 11 22 chr5 20863742 20863834 -182221698 + G-rich Low_complexity Low_complexity 5 95 0 21 0 0 0 chr5 20863931 20863952 -182221580 + GC_rich Low_complexity Low_complexity 1 21 0 385 183 14 35 chr5 20864420 20864562 -182220970 + CT-rich Low_complexity Low_complexity 1 139 0 292 227 19 63 chr5 20865035 20865168 -182220364 + L1ME3 LINE L1 6038 6166 -4 191 254 34 34 chr5 20865185 20865244 -182220288 - L2 LINE L2 -14 3258 3200 2120 116 73 14 chr5 20866959 20867313 -182218219 + THE1C LTR MaLR 1 375 0 191 242 0 65 chr5 20867571 20867633 -182217899 + L2 LINE L2 3208 3265 -7 275 331 106 7 chr5 20868518 20868660 -182216872 - L2 LINE L2 -895 2419 2264 1606 129 121 4 chr5 20869465 20869729 -182215803 + AluJb SINE Alu 1 295 -17 743 100 0 0 chr5 20869762 20869862 -182215670 - HY1 scRNA scRNA -12 100 1 2337 183 16 56 chr5 20869862 20870326 -182215206 + LTR54 LTR ERV1 18 461 -49 2563 60 0 10 chr5 20870326 20870640 -182214892 - AluY SINE Alu 0 311 1 2337 183 16 56 chr5 20870640 20870689 -182214843 + LTR54 LTR ERV1 461 510 0 910 257 75 12 chr5 20870710 20870963 -182214569 - MER21B LTR ERV1 -57 806 538 525 131 0 0 chr5 20870975 20871059 -182214473 + (CA)n Simple_repeat Simple_repeat 2 85 0 1635 184 4 0 chr5 20871059 20871337 -182214195 - AluJo SINE Alu -33 279 1 1777 194 23 127 chr5 20871340 20871947 -182213585 - MER21B LTR ERV1 -319 544 1 477 236 9 9 chr5 20872687 20872793 -182212739 - MER94 DNA DNA -20 114 9 303 233 0 33 chr5 20873382 20873472 -182212060 + HsTC2 DNA Tc2 1 87 -1811 1819 298 125 38 chr5 20874372 20874733 -182210799 + L1MC4 LINE L1 6707 7035 -1007 1471 158 0 0 chr5 20874733 20874948 -182210584 + AluJb SINE Alu 83 297 -15 1819 298 125 38 chr5 20874948 20875353 -182210179 + L1MC4 LINE L1 7035 7403 -639 1989 140 3 3 chr5 20875353 20875653 -182209879 - AluSq SINE Alu -13 300 1 1938 129 61 0 chr5 20875653 20875932 -182209600 - AluSx SINE Alu -16 296 1 1819 298 125 38 chr5 20875932 20876263 -182209269 + L1MC4 LINE L1 7682 7926 -116 423 0 0 0 chr5 20876263 20876310 -182209222 + (TG)n Simple_repeat Simple_repeat 2 48 0 1819 298 125 38 chr5 20876310 20876438 -182209094 + L1MC4 LINE L1 7926 8041 -1 357 197 0 0 chr5 20876711 20876777 -182208755 - AluS SINE Alu -7 294 229 1398 106 0 15 chr5 20876844 20877042 -182208490 - AluSx SINE Alu -117 195 1 183 319 28 14 chr5 20877166 20877238 -182208294 - L2 LINE L2 -14 3258 3186 270 362 91 26 chr5 20877436 20877931 -182207601 - L2 LINE L2 -346 2968 2421 1633 179 68 70 chr5 20877931 20877978 -182207554 - MLT2D LTR ERVL 0 414 368 402 21 0 0 chr5 20877978 20878025 -182207507 + (TG)n Simple_repeat Simple_repeat 1 47 0 1633 179 68 70 chr5 20878025 20878391 -182207141 - MLT2D LTR ERVL -46 368 2 270 362 91 26 chr5 20878391 20878536 -182206996 - L2 LINE L2 -893 2421 2287 249 177 108 54 chr5 20878631 20878761 -182206771 - MLT1F LTR MaLR -217 325 189 2307 103 0 3 chr5 20878918 20879230 -182206302 + AluY SINE Alu 1 311 0 8493 32 5 11 chr5 20879387 20881159 -182204373 - L1PA4 LINE L1 -18 6137 4367 264 217 62 108 chr5 20881283 20881327 -182204205 + L2 LINE L2 3190 3234 -79 1731 138 24 3 chr5 20881327 20881616 -182203916 - AluSx SINE Alu -16 296 2 264 217 62 108 chr5 20881616 20881700 -182203832 + L2 LINE L2 3234 3312 -1 270 255 54 34 chr5 20881728 20881877 -182203655 + L1ME4a LINE L1 5968 6119 -2 558 285 29 7 chr5 20882381 20882518 -182203014 - MER21B LTR ERV1 -186 677 538 750 154 0 0 chr5 20882530 20882660 -182202872 + (CA)n Simple_repeat Simple_repeat 2 131 0 1635 184 4 0 chr5 20882660 20882938 -182202594 - AluJo SINE Alu -33 279 1 1777 194 23 127 chr5 20882941 20883548 -182201984 - MER21B LTR ERV1 -319 544 1 477 236 9 9 chr5 20884287 20884393 -182201139 - MER94 DNA DNA -20 114 9 303 233 0 33 chr5 20884982 20885072 -182200460 + HsTC2 DNA Tc2 1 87 -1811 1796 296 124 40 chr5 20885970 20886330 -182199202 + L1MC4 LINE L1 6707 7035 -1007 1479 157 0 0 chr5 20886330 20886546 -182198986 + AluJb SINE Alu 83 298 -14 1796 296 124 40 chr5 20886546 20886951 -182198581 + L1MC4 LINE L1 7035 7404 -638 2035 139 0 3 chr5 20886951 20887252 -182198280 - AluSq SINE Alu -13 300 1 1906 134 60 0 chr5 20887252 20887534 -182197998 - AluSx SINE Alu -12 300 1 1796 296 124 40 chr5 20887534 20887865 -182197667 + L1MC4 LINE L1 7404 7706 -336 477 0 0 0 chr5 20887865 20887918 -182197614 + (TG)n Simple_repeat Simple_repeat 2 54 0 1796 296 124 40 chr5 20887918 20888050 -182197482 + L1MC4 LINE L1 7706 8042 0 2209 124 0 0 chr5 20888322 20888621 -182196911 - AluSx SINE Alu -13 299 1 183 319 28 14 chr5 20888745 20888817 -182196715 - L2 LINE L2 -14 3258 3186 277 362 91 26 chr5 20889015 20889510 -182196022 - L2 LINE L2 -346 2968 2421 1624 181 68 70 chr5 20889510 20889557 -182195975 - MLT2D LTR ERVL 0 414 368 315 0 0 0 chr5 20889557 20889592 -182195940 + (TG)n Simple_repeat Simple_repeat 1 35 0 1624 181 68 70 chr5 20889592 20889958 -182195574 - MLT2D LTR ERVL -46 368 2 277 362 91 26 chr5 20889958 20890103 -182195429 - L2 LINE L2 -893 2421 2287 249 177 108 54 chr5 20890198 20890328 -182195204 - MLT1F LTR MaLR -217 325 189 2351 93 0 3 chr5 20890485 20890797 -182194735 + AluY SINE Alu 1 311 0 3361 52 7 5 chr5 20890960 20891382 -182194150 - L1PA4 LINE L1 -18 6137 5715 1038 198 40 12 chr5 20891415 20891663 -182193869 + MER39 LTR ERV1 393 647 -60 21532 45 12 5 chr5 20891663 20894340 -182191192 - L1P LINE L1 -2762 3384 687 227 127 0 73 chr5 20894539 20894594 -182190938 + Alu SINE Alu 2 52 -249 1053 81 6 43 chr5 20894718 20894879 -182190653 + AluSq SINE Alu 140 294 -19 2513 67 0 0 chr5 20894930 20895228 -182190304 + AluY SINE Alu 1 298 -13 27 29 0 0 chr5 20895362 20895396 -182190136 + AT_rich Low_complexity Low_complexity 1 34 0 806 142 58 0 chr5 20895796 20895916 -182189616 - FLAM_C SINE Alu -16 127 1 2113 117 0 3 chr5 20895920 20896210 -182189322 - AluSg SINE Alu -21 289 1 2012 164 0 0 chr5 20896885 20897189 -182188343 - AluSx SINE Alu -8 304 1 24 0 0 0 chr5 20898057 20898081 -182187451 + AT_rich Low_complexity Low_complexity 1 24 0 2438 80 0 3 chr5 20898158 20898459 -182187073 - AluSq SINE Alu -13 300 1 2349 109 0 0 chr5 20900336 20900638 -182184894 - AluSx SINE Alu -10 302 1 301 253 163 11 chr5 20901431 20901621 -182183911 - L2 LINE L2 -117 3196 2978 936 202 62 5 chr5 20902633 20902841 -182182691 + MER58A DNA MER1_type 2 221 -3 2324 93 27 0 chr5 20903147 20903448 -182182084 + AluSc SINE Alu 1 309 0 586 205 105 53 chr5 20903453 20903643 -182181889 + L1MC5 LINE L1 7711 7910 -51 393 296 75 0 chr5 20904433 20904592 -182180940 - MER112 DNA MER1_type -16 244 74 237 204 20 0 chr5 20904936 20904985 -182180547 + L2 LINE L2 3257 3306 -7 208 134 15 149 chr5 20905007 20905074 -182180458 - MER5A DNA MER1_type -85 104 47 186 329 25 51 chr5 20905452 20905610 -182179922 + L2 LINE L2 2809 2962 -310 2364 105 0 6 chr5 20905684 20905997 -182179535 + AluSq SINE Alu 1 311 -2 2525 75 3 0 chr5 20906522 20906828 -182178704 - AluSc SINE Alu -2 307 1 2234 112 0 0 chr5 20907219 20907514 -182178018 + AluSx SINE Alu 2 296 -16 7539 32 8 4 chr5 20907803 20909243 -182176289 + L1PA4 LINE L1 4695 6155 0 2298 103 0 3 chr5 20909945 20910245 -182175287 + AluSx SINE Alu 1 299 -13 322 298 181 23 chr5 20910256 20910555 -182174977 + L2 LINE L2 2967 3312 -1 1817 167 24 3 chr5 20910944 20911237 -182174295 - AluJo SINE Alu -13 299 1 27237 50 9 5 chr5 20911291 20914660 -182170872 + L1P LINE L1 1 3384 -2762 271 181 23 98 chr5 20914660 20914793 -182170739 - MER39 LTR ERV1 -60 647 525 3219 52 24 9 chr5 20915003 20915425 -182170107 + L1PA5 LINE L1 5725 6152 -2 1193 245 57 49 chr5 20915593 20915832 -182169700 + L1ME2 LINE L1 5662 5897 -267 2059 98 0 0 chr5 20915832 20916097 -182169435 + AluSx SINE Alu 35 299 -13 1193 245 57 49 chr5 20916097 20916327 -182169205 + L1ME2 LINE L1 5897 6135 -29 29 0 0 0 chr5 20916529 20916558 -182168974 + AT_rich Low_complexity Low_complexity 1 29 0 402 257 88 41 chr5 20916933 20917104 -182168428 - L1ME3A LINE L1 -249 5921 5743 1068 180 0 0 chr5 20917919 20918091 -182167441 - FAM SINE Alu -3 172 1 1794 174 11 0 chr5 20918093 20918380 -182167152 - AluJb SINE Alu -22 290 1 2271 90 24 0 chr5 20918391 20918679 -182166853 - AluY SINE Alu -16 295 1 2255 124 0 0 chr5 20918695 20918993 -182166539 - AluSx SINE Alu -14 298 1 2441 92 0 0 chr5 20919842 20920145 -182165387 - AluSc SINE Alu -6 303 1 1279 191 68 18 chr5 20920167 20920445 -182165087 - AluJo SINE Alu -20 292 1 384 22 0 0 chr5 20920850 20920895 -182164637 + (TG)n Simple_repeat Simple_repeat 2 46 0 471 206 84 8 chr5 20922298 20922429 -182163103 + MIR SINE MIR 34 174 -88 243 125 0 0 chr5 20922487 20922527 -182163005 + (TATG)n Simple_repeat Simple_repeat 1 40 0 1344 167 119 19 chr5 20922921 20923190 -182162342 - AluJo SINE Alu -3 309 14 2266 96 0 10 chr5 20924685 20924986 -182160546 - AluSq SINE Alu -15 298 1 21 0 0 0 chr5 20924996 20925017 -182160515 + AT_rich Low_complexity Low_complexity 1 21 0 261 75 0 0 chr5 20925389 20925429 -182160103 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 2006 128 3 3 chr5 20925429 20925711 -182159821 - AluSx SINE Alu -30 282 1 1235 146 0 0 chr5 20925883 20926075 -182159457 - Tigger5 DNA MER2_type 0 2323 2132 1989 144 10 0 chr5 20926090 20926381 -182159151 - AluJb SINE Alu -18 294 1 10409 122 59 12 chr5 20926386 20928059 -182157473 - Tigger1 DNA MER2_type -627 1791 40 3288 157 47 8 chr5 20928185 20928514 -182157018 - L1MB7 LINE L1 -5 6179 5864 2258 98 3 0 chr5 20928514 20928810 -182156722 - AluSp SINE Alu -16 297 1 3288 157 47 8 chr5 20928810 20929103 -182156429 - L1MB7 LINE L1 -320 5864 5533 189 0 0 0 chr5 20930324 20930345 -182155187 + (A)n Simple_repeat Simple_repeat 1 21 0 1512 103 94 5 chr5 20930361 20930584 -182154948 - AluSx SINE Alu -69 243 1 2049 98 11 14 chr5 20930663 20930940 -182154592 - AluSg SINE Alu -30 280 5 234 297 9 63 chr5 20932057 20932168 -182153364 - MIR SINE MIR -63 145 41 2346 101 0 0 chr5 20932326 20932623 -182152909 + AluSg SINE Alu 1 297 -13 1519 182 27 17 chr5 20933596 20933892 -182151640 + AluJb SINE Alu 1 299 -13 5867 87 1 5 chr5 20933954 20934758 -182150774 - L1PB1 LINE L1 0 6151 5351 1451 189 65 3 chr5 20934757 20935133 -182150399 - L1MD1 LINE L1 -70 6172 5626 * 363 23 0 0 chr5 20935135 20935179 -182150353 + (TG)n Simple_repeat Simple_repeat 1 44 0 242 258 0 15 chr5 20935286 20935352 -182150180 - L1ME LINE L1 -456 5665 5601 2088 115 17 3 chr5 20935605 20935901 -182149631 - AluSx SINE Alu -12 300 1 270 81 0 0 chr5 20935937 20935974 -182149558 + (TG)n Simple_repeat Simple_repeat 2 38 0 248 237 79 26 chr5 20936814 20936890 -182148642 + L2 LINE L2 3144 3223 -49 713 126 150 8 chr5 20936980 20937131 -182148401 + FRAM SINE Alu 1 169 0 1899 120 0 47 chr5 20937214 20937514 -182148018 - AluSx SINE Alu -3 309 24 208 225 42 56 chr5 20937775 20937846 -182147686 - MIR SINE MIR -152 110 41 304 236 176 34 chr5 20937923 20938071 -182147461 + MIR SINE MIR 80 248 -14 2146 114 7 10 chr5 20938274 20938573 -182146959 + AluSx SINE Alu 1 298 -14 280 326 50 21 chr5 20939427 20939568 -182145964 - MIR SINE MIR -14 248 104 2104 126 0 22 chr5 20939681 20939998 -182145534 - AluSg SINE Alu 0 310 1 879 204 6 0 chr5 20940001 20940158 -182145374 - AluSg/x SINE Alu -19 291 134 485 250 149 0 chr5 20940281 20940469 -182145063 - MER112 DNA MER1_type -38 222 7 2307 81 0 3 chr5 20940966 20941273 -182144259 - AluSc SINE Alu 0 306 1 470 207 0 63 chr5 20941431 20941542 -182143990 - MER20 DNA MER1_type -80 139 36 180 150 0 0 chr5 20942068 20942087 -182143445 + (C)n Simple_repeat Simple_repeat 1 19 -21 2494 63 3 7 chr5 20942087 20942390 -182143142 + AluY SINE Alu 1 302 -9 180 150 0 0 chr5 20942390 20942410 -182143122 + (C)n Simple_repeat Simple_repeat 18 40 0 1990 130 0 11 chr5 20942415 20942699 -182142833 - AluSx SINE Alu -31 281 1 2653 48 0 0 chr5 20942906 20943217 -182142315 + AluY SINE Alu 1 311 0 265 294 95 47 chr5 20943294 20943505 -182142027 + L2 LINE L2 2988 3208 -105 908 79 173 0 chr5 20943614 20943753 -182141779 - L1PA11 LINE L1 0 6174 6012 187 239 0 0 chr5 20943777 20943823 -182141709 - MIR SINE MIR -15 247 202 2720 51 0 0 chr5 20944125 20944436 -182141096 + AluY SINE Alu 1 311 0 352 156 82 4 chr5 20944713 20945081 -182140451 + (TA)n Simple_repeat Simple_repeat 1 396 0 1701 168 16 20 chr5 20947148 20947451 -182138081 + AluJb SINE Alu 1 302 -10 504 48 0 0 chr5 20947474 20947537 -182137995 + (CA)n Simple_repeat Simple_repeat 2 64 0 2286 100 0 0 chr5 20948771 20949060 -182136472 + AluSg SINE Alu 2 290 -20 2421 71 10 0 chr5 20949060 20949356 -182136176 + AluSc SINE Alu 1 299 -10 2287 84 7 7 chr5 20949534 20949830 -182135702 - AluSc SINE Alu -13 296 1 235 304 0 0 chr5 20950277 20950346 -182135186 + L2 LINE L2 3242 3310 -3 1044 222 17 17 chr5 20950435 20950669 -182134863 + MER46A DNA MER2_type 2 235 -1 731 176 24 0 chr5 20950715 20950840 -182134692 - FLAM_A SINE Alu -2 131 4 1784 228 77 57 chr5 20951379 20951443 -182134089 - MLT1E2 LTR MaLR 0 626 565 2423 49 3 23 chr5 20951443 20951747 -182133785 + AluY SINE Alu 1 298 -13 1784 228 77 57 chr5 20951747 20952296 -182133236 - MLT1E2 LTR MaLR -61 565 1 1205 200 0 96 chr5 20952308 20952653 -182132879 - AluJo SINE Alu 0 312 1 24 0 0 0 chr5 20952947 20952971 -182132561 + AT_rich Low_complexity Low_complexity 1 24 0 1928 157 0 3 chr5 20954042 20954348 -182131184 + AluJb SINE Alu 1 305 -7 765 242 68 5 chr5 20954523 20954713 -182130819 + MER20 DNA MER1_type 1 202 -17 2273 101 10 3 chr5 20954792 20955099 -182130433 - AluSx SINE Alu -3 309 1 1612 162 72 7 chr5 20955099 20955377 -182130155 - AluJo SINE Alu -16 296 1 2354 90 7 0 chr5 20956917 20957216 -182128316 + AluSg SINE Alu 1 301 -9 1757 165 16 32 chr5 20957390 20957706 -182127826 - AluJo SINE Alu -1 311 1 280 211 0 77 chr5 20959206 20959225 -182126307 - L1MA9 LINE L1 0 6312 6293 2288 70 13 20 chr5 20959225 20959523 -182126009 - AluY SINE Alu -15 296 1 1815 126 13 53 chr5 20959523 20959825 -182125707 - AluSx SINE Alu -22 290 1 280 211 0 77 chr5 20959825 20959908 -182125624 - L1MA9 LINE L1 -17 6295 6217 2285 110 13 0 chr5 20960399 20960707 -182124825 - AluSx SINE Alu 0 312 1 1618 141 21 4 chr5 20960969 20961210 -182124322 - AluJb SINE Alu -22 290 46 601 105 0 0 chr5 20961210 20961296 -182124236 - AluS SINE Alu -225 87 2 1768 156 24 17 chr5 20962449 20962744 -182122788 - AluJb SINE Alu -15 297 1 1657 139 45 45 chr5 20962744 20963053 -182122479 - AluJb SINE Alu -3 309 1 2432 78 10 0 chr5 20963203 20963511 -182122021 - AluY SINE Alu 0 311 1 1144 169 74 4 chr5 20963544 20963787 -182121745 - L1MB2 LINE L1 -4 6167 5908 1325 181 24 0 chr5 20963788 20964036 -182121496 - L1MB3 LINE L1 -214 5969 5716 2044 127 0 13 chr5 20964376 20964675 -182120857 + AluSx SINE Alu 1 295 -17 752 178 0 8 chr5 20965482 20965611 -182119921 - FLAM_C SINE Alu -14 129 2 2091 132 0 3 chr5 20966094 20966390 -182119142 + AluSx SINE Alu 1 295 -17 30 0 0 0 chr5 20966929 20966959 -182118573 + AT_rich Low_complexity Low_complexity 1 30 0 2443 164 107 35 chr5 20967528 20967632 -182117900 - L1MB5 LINE L1 0 6174 6079 1650 182 35 43 chr5 20967632 20968028 -182117504 - MSTD LTR MaLR 0 396 4 2443 164 107 35 chr5 20968028 20968194 -182117338 - L1MB5 LINE L1 -95 6079 5509 595 251 61 79 chr5 20968194 20968505 -182117027 - L1PB4 LINE L1 -287 5869 5563 1488 143 4 8 chr5 20968505 20968742 -182116790 - MER46A DNA MER2_type 0 236 1 595 251 61 79 chr5 20968742 20968760 -182116772 - L1PB4 LINE L1 -593 5563 5546 1090 171 0 11 chr5 20968953 20969140 -182116392 - MLT1B LTR MaLR -205 185 1 840 125 5 27 chr5 20969388 20969572 -182115960 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 422 239 8 0 chr5 20969543 20969677 -182115855 + CT-rich Low_complexity Low_complexity 2 136 0 * 2168 107 7 3 chr5 20969678 20969977 -182115555 - AluSg SINE Alu -10 300 1 435 191 0 32 chr5 20970009 20970103 -182115429 - L1MB3 LINE L1 -1 6182 6092 638 148 0 17 chr5 20970105 20970220 -182115312 + FLAM_C SINE Alu 30 142 -1 501 146 63 101 chr5 20970226 20970277 -182115255 - L1MB4 LINE L1 -76 6104 6053 2094 119 11 0 chr5 20970277 20970563 -182114969 - AluSx SINE Alu -23 289 1 501 146 63 101 chr5 20970563 20970669 -182114863 - L1MB4 LINE L1 -127 6053 5953 22 0 0 0 chr5 20971494 20971516 -182114016 + AT_rich Low_complexity Low_complexity 1 22 0 2399 63 7 10 chr5 20971947 20972249 -182113283 - AluSp SINE Alu -11 302 2 23 0 0 0 chr5 20972252 20972275 -182113257 + AT_rich Low_complexity Low_complexity 1 23 0 1949 154 7 0 chr5 20972275 20972574 -182112958 + AluSx SINE Alu 1 301 -11 318 107 0 0 chr5 20973697 20973753 -182111779 + (TC)n Simple_repeat Simple_repeat 1 56 0 255 61 0 0 chr5 20973753 20973786 -182111746 + (TG)n Simple_repeat Simple_repeat 2 34 0 315 122 0 0 chr5 20974306 20974355 -182111177 + (TG)n Simple_repeat Simple_repeat 2 50 0 222 171 0 0 chr5 20974958 20974999 -182110533 + (TA)n Simple_repeat Simple_repeat 1 41 0 2000 142 21 48 chr5 20975129 20975503 -182110029 - THE1B LTR MaLR 0 364 1 1704 144 46 25 chr5 20976090 20976374 -182109158 - AluSx SINE Alu -7 305 16 893 204 73 11 chr5 20976596 20976787 -182108745 - MER58A DNA MER1_type -16 208 6 253 281 70 53 chr5 20976862 20977090 -182108442 + L2 LINE L2 1522 1753 -1561 312 329 96 14 chr5 20977230 20977449 -182108083 + L2 LINE L2 2229 2465 -849 367 204 29 29 chr5 20977462 20977565 -182107967 - L1ME2 LINE L1 -7 6157 6055 2114 67 22 8 chr5 20977805 20978073 -182107459 + AluSx SINE Alu 5 276 -36 270 310 0 11 chr5 20978090 20978177 -182107355 + L2 LINE L2 2688 2773 -541 207 0 0 0 chr5 20978260 20978283 -182107249 + (T)n Simple_repeat Simple_repeat 1 23 0 2077 120 0 0 chr5 20978730 20979006 -182106526 - AluSx SINE Alu -36 276 1 26 0 0 0 chr5 20979006 20979032 -182106500 + AT_rich Low_complexity Low_complexity 1 26 0 260 83 0 0 chr5 20979073 20979109 -182106423 - MER5B DNA MER1_type -140 38 3 1025 193 25 55 chr5 20979159 20979259 -182106273 - MER46A DNA MER2_type 0 236 144 733 231 61 39 chr5 20979259 20979488 -182106044 + MER46A DNA MER2_type 3 236 0 285 266 76 0 chr5 20979683 20979762 -182105770 - MLT1I LTR MaLR -6 403 319 2309 110 0 16 chr5 20979989 20980306 -182105226 - AluSx SINE Alu 0 312 1 236 277 116 0 chr5 20980647 20980759 -182104773 - MLT1L LTR MaLR -10 605 481 194 283 67 0 chr5 20982084 20982144 -182103388 - L2 LINE L2 -56 3257 3194 233 135 96 19 chr5 20983219 20983271 -182102261 + MER58A DNA MER1_type 1 56 -168 593 176 44 52 chr5 20983305 20983441 -182102091 - L1MB3 LINE L1 -7 6176 6042 1048 174 35 0 chr5 20983450 20983622 -182101910 + MER58A DNA MER1_type 47 224 0 230 313 75 34 chr5 20983622 20983769 -182101763 - MIR3 SINE MIR -48 160 8 774 176 8 0 chr5 20984365 20984490 -182101042 + FLAM_A SINE Alu 4 129 -4 2279 107 0 0 chr5 20984514 20984814 -182100718 + AluSx SINE Alu 1 300 -12 2160 123 3 7 chr5 20985693 20985993 -182099539 + AluSx SINE Alu 1 299 -13 2051 169 64 10 chr5 20986779 20986904 -182098628 - MER61C LTR ERV1 0 434 317 2647 36 7 0 chr5 20986904 20987206 -182098326 + AluY SINE Alu 1 304 -7 2051 169 64 10 chr5 20987206 20987510 -182098022 - MER61C LTR ERV1 -117 317 1 2308 96 3 10 chr5 20987745 20988057 -182097475 + AluSg SINE Alu 1 310 0 333 281 195 14 chr5 20988114 20988324 -182097208 - MIR SINE MIR -6 256 9 283 263 21 11 chr5 20989539 20989634 -182095898 + L1M4 LINE L1 4102 4197 -1949 1913 159 0 10 chr5 20989702 20990010 -182095522 + AluJb SINE Alu 1 305 -7 2137 94 4 0 chr5 20990011 20990278 -182095254 + AluSg SINE Alu 13 280 -30 243 0 0 0 chr5 20990282 20990309 -182095223 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 862 168 52 7 chr5 20990309 20990464 -182095068 + FRAM SINE Alu 1 158 -18 183 246 98 0 chr5 20990864 20990925 -182094607 - L2 LINE L2 0 3313 3247 34 24 0 0 chr5 20991118 20991159 -182094373 + AT_rich Low_complexity Low_complexity 1 41 0 2517 71 0 7 chr5 20991178 20991487 -182094045 + AluY SINE Alu 1 307 -4 1283 160 9 5 chr5 20992220 20992433 -182093099 - AluJo SINE Alu -12 300 87 1009 242 125 24 chr5 20992816 20993192 -182092340 - L1ME1 LINE L1 -5 6161 5748 2452 71 3 3 chr5 20993467 20993764 -182091768 + AluSp SINE Alu 1 297 -16 186 43 0 0 chr5 20993990 20994013 -182091519 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1710 178 0 7 chr5 20994019 20994362 -182091170 + AluJb SINE Alu 1 341 0 265 246 53 18 chr5 20994509 20994623 -182090909 - L1P5 LINE L1 -556 5600 5483 2084 139 7 0 chr5 20994829 20995139 -182090393 + AluSp SINE Alu 1 312 -1 862 157 11 62 chr5 20995641 20995819 -182089713 - FRAM SINE Alu -15 161 1 753 107 27 9 chr5 20995834 20995946 -182089586 + FLAM_C SINE Alu 6 119 -24 252 0 0 0 chr5 20995946 20995974 -182089558 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2204 94 7 17 chr5 20996257 20996554 -182088978 + AluSx SINE Alu 1 294 -18 1894 165 0 9 chr5 20996921 20997236 -182088296 + AluJb SINE Alu 1 312 0 1813 187 25 104 chr5 20997789 20997919 -182087613 - Charlie1b DNA MER1_type -2238 523 384 2271 113 0 0 chr5 20997919 20998210 -182087322 + AluSx SINE Alu 1 291 -21 1813 187 25 104 chr5 20998210 20998423 -182087109 - Charlie1b DNA MER1_type -2377 384 156 2136 118 3 13 chr5 20998423 20998729 -182086803 + AluSx SINE Alu 1 303 -9 1813 187 25 104 chr5 20998729 20998872 -182086660 - Charlie1b DNA MER1_type -2605 156 3 1539 128 178 8 chr5 20998872 20999130 -182086402 + AluY SINE Alu 1 302 -9 1840 85 38 114 chr5 20999136 20999452 -182086080 + AluYb8 SINE Alu 5 296 -22 1813 187 25 104 chr5 20999452 20999513 -182086019 - Charlie1b DNA MER1_type -2686 75 11 609 270 95 0 chr5 21000040 21000262 -182085270 + MIR SINE MIR 15 257 -5 21 36 0 0 chr5 21000291 21000319 -182085213 + AT_rich Low_complexity Low_complexity 1 28 0 2690 78 101 12 chr5 21000362 21000770 -182084762 - MLT2A1 LTR ERVL 0 444 1 2422 95 0 0 chr5 21000909 21001213 -182084319 + AluSx SINE Alu 2 305 -7 2077 124 3 10 chr5 21001729 21002028 -182083504 - AluSx SINE Alu -10 302 6 2131 129 7 16 chr5 21002907 21003216 -182082316 - AluSx SINE Alu -6 306 1 243 0 0 0 chr5 21003750 21003777 -182081755 + (T)n Simple_repeat Simple_repeat 1 27 0 1479 169 23 49 chr5 21003936 21004244 -182081288 + AluJo SINE Alu 1 300 -12 2198 116 0 0 chr5 21004602 21004916 -182080616 + AluSq SINE Alu 1 314 0 304 256 40 72 chr5 21004981 21005106 -182080426 - MIR SINE MIR -94 168 48 2351 85 0 31 chr5 21005404 21005722 -182079810 - AluY SINE Alu -2 309 2 2413 75 3 3 chr5 21006671 21006966 -182078566 + AluSq SINE Alu 1 295 -18 539 268 42 19 chr5 21007029 21007249 -182078283 - MIR SINE MIR 0 262 37 274 321 37 8 chr5 21007278 21007412 -182078120 - MIR SINE MIR -55 207 70 1891 157 0 20 chr5 21007942 21008242 -182077290 + AluJb SINE Alu 13 306 -6 991 176 0 0 chr5 21008538 21008551 -182076981 - AluJb SINE Alu -17 295 283 426 20 0 0 chr5 21008551 21008602 -182076930 + (TG)n Simple_repeat Simple_repeat 1 51 0 991 176 0 0 chr5 21008602 21008747 -182076785 - AluJb SINE Alu -28 284 137 1901 149 0 56 chr5 21008747 21009068 -182076464 - AluJb SINE Alu -5 307 5 818 213 94 109 chr5 21009375 21009525 -182076007 + L1MC5 LINE L1 7451 7602 -359 1774 171 30 7 chr5 21009525 21009823 -182075709 + AluJo SINE Alu 1 305 -7 818 213 94 109 chr5 21009823 21010160 -182075372 + L1MC5 LINE L1 7602 7931 -30 2354 60 0 0 chr5 21010426 21010730 -182074802 + AluY SINE Alu 1 304 0 212 258 0 0 chr5 21011408 21011470 -182074062 + T-rich Low_complexity Low_complexity 1 62 0 196 82 31 72 chr5 21011807 21011904 -182073628 + (TTTAA)n Simple_repeat Simple_repeat 3 95 0 2309 105 3 0 chr5 21012120 21012424 -182073108 + AluSx SINE Alu 1 305 -7 2264 92 6 16 chr5 21012424 21012738 -182072794 + AluY SINE Alu 1 311 0 2163 119 0 16 chr5 21013305 21013615 -182071917 + AluSx SINE Alu 1 305 -7 369 223 87 10 chr5 21013627 21013730 -182071802 + MER104 DNA Tc2 58 168 -12 1928 115 49 18 chr5 21014124 21014410 -182071122 + AluSg SINE Alu 5 299 -11 2232 100 4 0 chr5 21014872 21015177 -182070355 - AluSp SINE Alu 0 306 1 22 0 0 0 chr5 21015467 21015489 -182070043 + AT_rich Low_complexity Low_complexity 1 22 0 2111 105 7 0 chr5 21016382 21016658 -182068874 - AluSx SINE Alu -6 306 29 309 51 0 0 chr5 21017246 21017285 -182068247 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 226 159 0 23 chr5 21017285 21017329 -182068203 + CT-rich Low_complexity Low_complexity 1 43 0 1999 122 6 47 chr5 21017335 21017654 -182067878 + AluSx SINE Alu 1 306 -6 961 189 6 0 chr5 21017655 21017824 -182067708 + AluJb SINE Alu 135 304 -8 2484 74 0 3 chr5 21017888 21018254 -182067278 - AluY SINE Alu 0 365 1 291 284 46 0 chr5 21019032 21019141 -182066391 - HsTC2 DNA Tc2 0 1900 1787 530 314 135 4 chr5 21019145 21019397 -182066135 - HsTC2 DNA Tc2 -1487 411 127 4330 80 5 0 chr5 21019427 21019978 -182065554 + MER41A LTR ERV1 1 554 0 1826 156 3 34 chr5 21020166 21020487 -182065045 - AluJo SINE Alu -1 311 1 2330 84 7 7 chr5 21020534 21020833 -182064699 - AluSq SINE Alu -14 299 1 251 309 48 16 chr5 21020836 21020962 -182064570 - L3 LINE CR1 -194 1383 1254 887 215 74 8 chr5 21021858 21022114 -182063418 - L1MC2 LINE L1 0 6344 6072 2076 131 0 0 chr5 21022233 21022530 -182063002 - AluSx SINE Alu -15 297 1 1897 144 3 0 chr5 21022761 21023052 -182062480 - AluSp SINE Alu -21 292 1 1842 121 36 4 chr5 21023066 21023347 -182062185 - AluSq SINE Alu -17 296 7 21 0 0 0 chr5 21023738 21023759 -182061773 + AT_rich Low_complexity Low_complexity 1 21 0 323 282 132 35 chr5 21025998 21026172 -182059360 - L1ME4a LINE L1 -6 6115 5925 277 222 67 44 chr5 21026336 21026426 -182059106 - L1ME4a LINE L1 -462 5659 5568 313 303 191 0 chr5 21026489 21026641 -182058891 + L1ME LINE L1 5265 5445 -719 883 192 48 0 chr5 21026683 21026850 -182058682 - FAM SINE Alu 0 175 1 252 224 0 17 chr5 21026915 21026973 -182058559 + L1ME LINE L1 5521 5577 -544 2103 123 0 0 chr5 21026979 21027280 -182058252 - AluSg SINE Alu -9 301 1 716 248 82 19 chr5 21028011 21028217 -182057315 - MER20 DNA MER1_type 0 219 1 1420 185 82 4 chr5 21030187 21030468 -182055064 - AluJo SINE Alu -9 303 1 2280 91 0 0 chr5 21031071 21031368 -182054164 - AluSq SINE Alu -16 297 1 264 268 28 14 chr5 21032552 21032623 -182052909 + MIR3 SINE MIR 114 185 -23 2186 119 0 0 chr5 21032727 21033039 -182052493 - AluSx SINE Alu 0 312 1 249 163 0 0 chr5 21033621 21033670 -182051862 + CT-rich Low_complexity Low_complexity 3 51 0 231 211 74 53 chr5 21033960 21034055 -182051477 - L1ME3A LINE L1 0 6170 6074 1906 118 0 21 chr5 21034242 21034551 -182050981 + AluSx SINE Alu 1 303 0 2225 92 0 0 chr5 21034552 21034846 -182050686 + AluSg1 SINE Alu 5 298 -11 315 206 0 29 chr5 21035705 21035773 -182049759 - MLT1L LTR MaLR -218 397 332 2363 61 24 0 chr5 21036147 21036444 -182049088 + AluY SINE Alu 1 304 -7 276 267 100 0 chr5 21036781 21036871 -182048661 - MER5C DNA MER1_type 0 324 226 264 30 0 0 chr5 21036871 21036904 -182048628 + LTR12 LTR ERV1 285 317 -397 319 271 0 0 chr5 21037001 21037071 -182048461 - MER5C DNA MER1_type -202 122 53 236 269 142 22 chr5 21037130 21037317 -182048215 + MIR SINE MIR 45 262 0 1054 178 50 31 chr5 21038612 21038870 -182046662 - MER33 DNA MER1_type -1 323 61 281 170 57 0 chr5 21038909 21038956 -182046576 - MER58A DNA MER1_type -1 223 174 614 210 118 0 chr5 21038956 21039075 -182046457 - MER58A DNA MER1_type 0 136 4 701 271 33 28 chr5 21039285 21039499 -182046033 + MIR SINE MIR 4 218 -44 227 356 0 0 chr5 21039519 21039609 -182045923 + (CTA)n Simple_repeat Simple_repeat 1 90 0 2117 104 10 3 chr5 21039805 21040103 -182045429 + AluSx SINE Alu 1 300 -12 245 288 55 0 chr5 21040357 21040430 -182045102 + MIR SINE MIR 157 233 -29 2136 114 0 28 chr5 21040497 21040814 -182044718 + AluSg SINE Alu 1 308 -2 213 116 23 47 chr5 21041078 21041121 -182044411 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 4367 207 121 16 chr5 21041522 21042484 -182043048 - L1MD3 LINE L1 -754 5392 5333 2326 58 0 39 chr5 21042484 21042795 -182042737 - AluY SINE Alu -12 299 1 4367 207 121 16 chr5 21042795 21043356 -182042176 - L1MD3 LINE L1 -813 5333 4832 2059 90 0 17 chr5 21045132 21045471 -182040061 + AluY SINE Alu 1 334 0 441 95 0 0 chr5 21045852 21045915 -182039617 + (CA)n Simple_repeat Simple_repeat 2 64 0 2138 115 0 0 chr5 21045915 21046210 -182039322 - AluSp SINE Alu -18 295 1 1511 108 5 9 chr5 21046561 21046784 -182038748 - pTR5 LTR ERV1 -2046 392 171 375 214 31 20 chr5 21046786 21046884 -182038648 - LTR30 LTR ERV1 -80 642 544 6433 157 67 36 chr5 21046884 21048125 -182037407 - pTR5 LTR ERV1 -419 2019 741 1968 126 3 17 chr5 21048756 21049058 -182036474 + AluSx SINE Alu 1 298 -14 206 346 0 0 chr5 21049066 21049118 -182036414 + MIR SINE MIR 92 143 -65 2564 26 3 0 chr5 21049383 21049685 -182035847 - AluY SINE Alu -8 303 1 2230 101 0 0 chr5 21050134 21050430 -182035102 - AluSx SINE Alu -16 296 1 657 214 0 13 chr5 21050448 21050602 -182034930 - L1MB8 LINE L1 0 6178 6027 860 128 8 8 chr5 21050624 21050757 -182034775 + AluSp SINE Alu 38 170 -143 243 0 0 0 chr5 21050770 21050797 -182034735 + (A)n Simple_repeat Simple_repeat 1 27 0 430 216 0 0 chr5 21050797 21050871 -182034661 - Tigger3(Golem) DNA MER2_type -2954 75 2 30 0 0 0 chr5 21051066 21051096 -182034436 + AT_rich Low_complexity Low_complexity 1 30 0 1541 132 48 0 chr5 21051098 21051348 -182034184 - L1MA2 LINE L1 -29 6275 6014 1588 58 0 19 chr5 21051376 21051583 -182033949 - AluY SINE Alu -39 272 70 249 250 0 0 chr5 21052143 21052195 -182033337 + L2 LINE L2 3261 3312 -1 204 40 0 0 chr5 21054057 21054082 -182031450 + (CCCCCA)n Simple_repeat Simple_repeat 5 29 0 429 254 154 54 chr5 21054244 21054393 -182031139 + L1MC5 LINE L1 7593 7726 -235 2188 64 51 0 chr5 21054393 21054688 -182030844 - AluSg SINE Alu 0 310 1 429 254 154 54 chr5 21054688 21054818 -182030714 + L1MC5 LINE L1 7726 7900 -61 1435 257 150 2 chr5 21056380 21056894 -182028638 - MLT1E LTR MaLR -3 590 1 234 282 83 83 chr5 21056903 21057059 -182028473 + L2 LINE L2 2949 3104 -168 1802 168 0 3 chr5 21057326 21057624 -182027908 + AluJo SINE Alu 1 297 -15 2856 91 3 0 chr5 21058903 21059266 -182026266 - THE1B LTR MaLR 0 364 1 23 33 0 0 chr5 21059398 21059428 -182026104 + AT_rich Low_complexity Low_complexity 1 30 0 183 204 0 0 chr5 21059864 21059908 -182025624 + (TATATG)n Simple_repeat Simple_repeat 6 49 0 318 272 22 22 chr5 21059909 21060001 -182025531 + L1MC4 LINE L1 6613 6704 -1338 1984 105 3 7 chr5 21060003 21060289 -182025243 - AluSx SINE Alu -27 285 1 21 71 0 0 chr5 21060294 21060336 -182025196 + AT_rich Low_complexity Low_complexity 1 42 0 625 246 177 0 chr5 21061128 21061360 -182024172 + MER5C DNA MER1_type 8 280 -44 1483 155 45 38 chr5 21061853 21062144 -182023388 - AluJb SINE Alu -19 293 1 2277 86 0 16 chr5 21062279 21062592 -182022940 - AluSc SINE Alu -1 308 1 256 147 29 44 chr5 21063194 21063262 -182022270 + GA-rich Low_complexity Low_complexity 3 69 0 1901 211 21 0 chr5 21063881 21064260 -182021272 - MLT1B LTR MaLR -1 389 3 1874 149 3 0 chr5 21065485 21065794 -182019738 - AluSx SINE Alu -2 310 1 861 139 0 0 chr5 21066374 21066518 -182019014 - AluSg/x SINE Alu -2 310 167 215 188 0 14 chr5 21067109 21067178 -182018354 + CT-rich Low_complexity Low_complexity 1 68 0 2384 57 0 0 chr5 21067266 21067565 -182017967 + AluY SINE Alu 1 299 -12 1547 173 37 0 chr5 21067787 21068100 -182017432 - AluJo SINE Alu 0 323 1 22 0 0 0 chr5 21068102 21068124 -182017408 + AT_rich Low_complexity Low_complexity 1 22 0 2106 107 7 0 chr5 21068479 21068769 -182016763 - AluSg SINE Alu -18 292 1 328 261 17 9 chr5 21068778 21068893 -182016639 + T-rich Low_complexity Low_complexity 1 116 0 2269 91 0 0 chr5 21069314 21069612 -182015920 - AluSg SINE Alu -11 299 2 24 67 0 0 chr5 21070001 21070046 -182015486 + AT_rich Low_complexity Low_complexity 1 45 0 2211 98 0 0 chr5 21070841 21071137 -182014395 - AluSx SINE Alu -16 296 1 1701 135 4 11 chr5 21072922 21073188 -182012344 - AluJb SINE Alu -32 280 17 869 243 69 107 chr5 21073428 21073742 -182011790 - L1MC5 LINE L1 -44 7917 7593 2369 104 3 0 chr5 21073742 21074050 -182011482 - AluSx SINE Alu -3 309 1 869 243 69 107 chr5 21074050 21074458 -182011074 - L1MC5 LINE L1 -368 7593 7222 2343 100 0 0 chr5 21074473 21074772 -182010760 - AluSx SINE Alu -13 299 1 2485 67 0 3 chr5 21074903 21075201 -182010331 - AluY SINE Alu -14 297 1 979 199 108 111 chr5 21075806 21076147 -182009385 + MER2 DNA MER2_type 6 345 0 338 258 16 70 chr5 21076939 21077067 -182008465 - MIR SINE MIR -37 225 105 2274 99 3 0 chr5 21077424 21077717 -182007815 - AluSp SINE Alu -6 307 14 1847 165 4 0 chr5 21078835 21079147 -182006385 - AluJo SINE Alu 0 315 3 2121 101 38 3 chr5 21079362 21079649 -182005883 + AluSq SINE Alu 1 297 -16 1401 118 77 14 chr5 21079689 21079910 -182005622 - MER46A DNA MER2_type 0 236 2 1721 166 38 3 chr5 21080681 21080971 -182004561 + AluJo SINE Alu 5 304 -8 2015 125 17 3 chr5 21081125 21081421 -182004111 - AluSx SINE Alu -12 300 1 1784 154 20 10 chr5 21081645 21081938 -182003594 + AluSp SINE Alu 1 296 -17 21 57 0 0 chr5 21081973 21082008 -182003524 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr5 21083378 21083400 -182002132 + AT_rich Low_complexity Low_complexity 1 22 0 1211 155 24 19 chr5 21085192 21085398 -182000134 - AluJb SINE Alu -25 287 81 213 344 56 16 chr5 21085867 21085992 -181999540 + L2 LINE L2 3141 3270 -2 2190 124 3 0 chr5 21086366 21086664 -181998868 + AluSx SINE Alu 1 299 -13 2179 106 3 23 chr5 21087588 21087891 -181997641 - AluSx SINE Alu -15 297 1 2255 105 0 3 chr5 21088128 21088423 -181997109 + AluSq SINE Alu 1 294 -19 2513 67 0 0 chr5 21088474 21088772 -181996760 + AluY SINE Alu 1 298 -13 27 29 0 0 chr5 21088906 21088940 -181996592 + AT_rich Low_complexity Low_complexity 1 34 0 806 142 58 0 chr5 21089340 21089460 -181996072 - FLAM_C SINE Alu -16 127 1 2113 117 0 3 chr5 21089464 21089754 -181995778 - AluSg SINE Alu -21 289 1 2012 164 0 0 chr5 21090429 21090733 -181994799 - AluSx SINE Alu -8 304 1 23 0 0 0 chr5 21091601 21091624 -181993908 + AT_rich Low_complexity Low_complexity 1 23 0 2438 80 0 3 chr5 21091701 21092002 -181993530 - AluSq SINE Alu -13 300 1 2357 109 0 0 chr5 21093879 21094182 -181991350 - AluSx SINE Alu -9 303 1 301 253 163 11 chr5 21094975 21095165 -181990367 - L2 LINE L2 -117 3196 2978 936 202 62 5 chr5 21096177 21096385 -181989147 + MER58A DNA MER1_type 2 221 -3 2228 86 38 0 chr5 21096691 21096982 -181988550 + AluY SINE Alu 1 302 -9 2088 106 57 0 chr5 21100972 21101255 -181984277 - AluSg SINE Alu -11 299 1 550 297 29 24 chr5 21102006 21102215 -181983317 - L1MD2 LINE L1 -10 6349 6140 1068 164 19 56 chr5 21102248 21102461 -181983071 + MER2 DNA MER2_type 1 205 -140 801 205 13 0 chr5 21102479 21102630 -181982902 - AluJb SINE Alu -20 292 140 2453 122 11 6 chr5 21103163 21103525 -181982007 - THE1B LTR MaLR 0 364 1 1968 168 7 0 chr5 21103554 21103864 -181981668 + AluJo SINE Alu 1 312 0 928 269 23 0 chr5 21104195 21104414 -181981118 + MER58A DNA MER1_type 1 224 0 222 318 73 73 chr5 21105087 21105279 -181980253 + L2 LINE L2 2599 2790 -524 1916 105 49 0 chr5 21105321 21105587 -181979945 - AluSg SINE Alu -31 279 1 838 194 4 106 chr5 21105823 21106050 -181979482 + MER63A DNA MER1_type 7 210 0 1463 287 67 25 chr5 21107027 21107090 -181978442 - MLT1H LTR MaLR 0 549 490 2199 106 23 3 chr5 21107090 21107391 -181978141 - AluSq SINE Alu -6 307 1 1463 287 67 25 chr5 21107391 21107846 -181977686 - MLT1H LTR MaLR -59 490 9 1889 176 94 8 chr5 21107921 21108313 -181977219 + MSTB LTR MaLR 1 426 0 423 150 59 124 chr5 21108601 21108745 -181976787 + MLT1J LTR MaLR 1 134 -377 883 273 130 55 chr5 21108745 21109256 -181976276 + MLT1G1 LTR MaLR 1 592 -3 592 330 42 13 chr5 21109259 21109702 -181975830 + MLT1G1-int LTR MaLR 2 576 -795 2210 128 0 0 chr5 21109934 21110232 -181975300 - AluSx SINE Alu -14 298 1 289 262 69 55 chr5 21110773 21110918 -181974614 + MLT1G1-int LTR MaLR 1574 1720 -15 789 254 24 52 chr5 21110930 21111178 -181974354 + MLT1F1 LTR MaLR 1 241 -326 356 286 93 54 chr5 21111335 21111453 -181974079 + L1M4 LINE L1 4129 4241 -1905 21296 29 8 6 chr5 21111453 21114777 -181970755 + L1PA4 LINE L1 2822 6155 0 356 286 93 54 chr5 21114777 21114938 -181970594 + L1M4 LINE L1 4241 4419 -1727 2243 108 0 3 chr5 21115479 21115776 -181969756 + AluSx SINE Alu 1 296 -16 311 313 180 27 chr5 21115787 21116087 -181969445 + L2 LINE L2 2967 3312 -1 1737 170 38 3 chr5 21116476 21116765 -181968767 - AluJo SINE Alu -13 299 1 27395 48 9 5 chr5 21116819 21120188 -181965344 + L1P LINE L1 1 3384 -2762 1047 192 49 8 chr5 21120188 21120433 -181965099 - MER39 LTR ERV1 -60 647 393 3517 42 16 5 chr5 21120466 21120899 -181964633 + L1PA4 LINE L1 5715 6152 -3 973 203 85 42 chr5 21120932 21121043 -181964489 + MLT1D LTR MaLR 6 111 -394 2096 120 14 0 chr5 21121043 21121327 -181964205 + AluSg SINE Alu 1 288 -22 973 203 85 42 chr5 21121327 21121667 -181963865 + MLT1D LTR MaLR 111 505 0 1778 131 134 7 chr5 21121970 21122275 -181963257 + MER2 DNA MER2_type 1 344 0 2120 105 14 14 chr5 21122418 21122713 -181962819 + AluSc SINE Alu 2 296 -13 764 267 73 54 chr5 21122772 21123143 -181962389 - MLT1J1 LTR MaLR 0 446 69 770 266 46 14 chr5 21123383 21123601 -181961931 + HERV16 LTR ERVL 1607 1831 -3165 1046 299 46 19 chr5 21123709 21124234 -181961298 + HERV16 LTR ERVL 2006 2506 -2490 503 283 279 24 chr5 21124608 21125064 -181960468 + L2 LINE L2 237 576 -2738 2452 88 7 0 chr5 21125064 21125372 -181960160 - AluY SINE Alu -1 310 1 503 283 279 24 chr5 21125372 21125622 -181959910 + L2 LINE L2 576 761 -2553 2127 164 126 42 chr5 21125622 21126099 -181959433 + MLT2B1 LTR ERVL 3 519 -1 503 283 279 24 chr5 21126099 21126377 -181959155 + L2 LINE L2 761 1473 -1841 865 299 165 24 chr5 21126414 21126781 -181958751 + L2 LINE L2 2259 2573 -740 1908 152 10 3 chr5 21126781 21127084 -181958448 + AluSx SINE Alu 1 305 -7 865 299 165 24 chr5 21127084 21127399 -181958133 + L2 LINE L2 2573 3035 -278 43672 44 11 5 chr5 21127401 21133212 -181952320 + L1PA4 LINE L1 1 5844 -311 1052 140 59 16 chr5 21134872 21135058 -181950474 - AluSq SINE Alu 0 313 120 569 100 100 10 chr5 21135498 21135598 -181949934 - AluSq SINE Alu -170 143 35 2183 112 0 7 chr5 21136629 21136924 -181948608 + AluSg SINE Alu 2 294 -16 1522 185 82 4 chr5 21137527 21137808 -181947724 + AluJo SINE Alu 1 303 -9 702 248 82 19 chr5 21139778 21139984 -181945548 + MER20 DNA MER1_type 1 219 0 573 128 0 32 chr5 21140682 21140776 -181944756 - 5S rRNA rRNA -30 91 1 2493 63 0 13 chr5 21141381 21141681 -181943851 - AluY SINE Alu -15 296 1 188 333 93 0 chr5 21141949 21142057 -181943475 - MIR3 SINE MIR -6 202 85 269 106 0 21 chr5 21142624 21142671 -181942861 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 2440 95 0 0 chr5 21142687 21142993 -181942539 - AluSg SINE Alu -4 306 1 1866 120 25 32 chr5 21143660 21143944 -181941588 + AluSx SINE Alu 1 282 -30 21 0 0 0 chr5 21144165 21144186 -181941346 + AT_rich Low_complexity Low_complexity 1 21 0 2163 95 3 14 chr5 21144188 21144500 -181941032 + AluSg SINE Alu 1 309 0 1043 149 0 0 chr5 21145645 21145799 -181939733 + FRAM SINE Alu 1 154 -22 933 138 6 50 chr5 21146305 21146465 -181939067 + AluSx SINE Alu 1 153 -159 665 110 0 63 chr5 21146553 21146680 -181938852 + AluSp/q SINE Alu 189 307 -6 927 142 20 0 chr5 21146926 21147074 -181938458 - FAM SINE Alu -13 172 22 2025 107 16 23 chr5 21147529 21147839 -181937693 + AluSq SINE Alu 3 310 -3 826 159 32 16 chr5 21147850 21148039 -181937493 + Charlie5 DNA MER1_type 2380 2571 -41 198 0 0 0 chr5 21148923 21148945 -181936587 + (T)n Simple_repeat Simple_repeat 1 22 0 350 188 27 9 chr5 21149207 21149319 -181936213 + CT-rich Low_complexity Low_complexity 3 116 0 2162 127 10 0 chr5 21149627 21149934 -181935598 - AluSx SINE Alu -2 310 1 693 176 0 0 chr5 21149951 21150059 -181935473 - FLAM_C SINE Alu -23 120 13 198 0 0 0 chr5 21150444 21150466 -181935066 + (TG)n Simple_repeat Simple_repeat 2 23 0 418 274 64 32 chr5 21151667 21151824 -181933708 - MIR SINE MIR -66 196 35 1125 220 52 12 chr5 21151841 21152221 -181933311 + L1MC3 LINE L1 7349 7778 -7 2212 125 3 3 chr5 21152562 21152867 -181932665 - AluSx SINE Alu -6 306 2 2671 51 0 6 chr5 21153008 21153321 -181932211 - AluY SINE Alu 0 311 1 1720 180 0 7 chr5 21153570 21153875 -181931657 - AluSx SINE Alu -8 304 2 180 296 0 0 chr5 21154155 21154199 -181931333 - L2 LINE L2 -41 3272 3229 1128 160 9 41 chr5 21154591 21154810 -181930722 - L1MB7 LINE L1 -20 6164 5953 * 2726 166 34 19 chr5 21154809 21154876 -181930656 - L1MB8 LINE L1 -213 5965 5901 1306 167 3 108 chr5 21154876 21155217 -181930315 - AluSx SINE Alu -7 305 1 2726 166 34 19 chr5 21155217 21155356 -181930176 - L1MB8 LINE L1 -277 5901 5766 2234 117 0 0 chr5 21155356 21155655 -181929877 - AluSx SINE Alu -8 304 6 2726 166 34 19 chr5 21155655 21156001 -181929531 - L1MB8 LINE L1 -412 5766 5472 546 141 8 25 chr5 21156643 21156764 -181928768 + CT-rich Low_complexity Low_complexity 2 120 0 1504 112 0 0 chr5 21156786 21156982 -181928550 - AluSg/x SINE Alu -32 280 85 1984 149 0 22 chr5 21156982 21157298 -181928234 - AluJb SINE Alu -3 309 1 1277 185 60 57 chr5 21157423 21157575 -181927957 - AluJo SINE Alu -13 299 144 1659 109 5 0 chr5 21157575 21157795 -181927737 - AluSp SINE Alu -14 299 79 1277 185 60 57 chr5 21157795 21157940 -181927592 - AluJo SINE Alu -168 144 1 224 282 13 0 chr5 21158022 21158100 -181927432 + (TGGA)n Simple_repeat Simple_repeat 3 81 0 2182 132 0 0 chr5 21158396 21158699 -181926833 + AluSx SINE Alu 1 303 -9 2146 136 0 0 chr5 21159226 21159536 -181925996 - AluSx SINE Alu -2 310 1 2221 116 3 3 chr5 21160493 21160796 -181924736 - AluSx SINE Alu -9 303 1 331 155 52 0 chr5 21161338 21161396 -181924136 + MER20 DNA MER1_type 155 215 -4 1603 172 37 17 chr5 21161776 21162073 -181923459 - AluJb SINE Alu -4 308 6 237 183 256 0 chr5 21162515 21162597 -181922935 - MER58B DNA MER1_type -37 304 202 2597 69 0 0 chr5 21162972 21163277 -181922255 + AluY SINE Alu 1 305 -6 1996 243 80 19 chr5 21163287 21163930 -181921602 - L1ME1 LINE L1 -6 6160 5465 2013 152 3 7 chr5 21165982 21166292 -181919240 - AluSx SINE Alu -3 309 1 184 241 56 0 chr5 21166581 21166635 -181918897 + MIR SINE MIR 74 130 -132 2443 104 3 6 chr5 21167195 21167551 -181917981 - L1PB2 LINE L1 0 6151 5797 374 246 109 0 chr5 21168047 21168185 -181917347 + MIR SINE MIR 15 167 -95 1616 184 46 23 chr5 21168981 21169329 -181916203 - MLT1A1 LTR MaLR 0 365 10 2104 127 0 0 chr5 21169333 21169625 -181915907 + AluSx SINE Alu 1 292 -20 1909 127 0 18 chr5 21170045 21170328 -181915204 - AluSx SINE Alu 0 312 35 2514 58 92 0 chr5 21171015 21171340 -181914192 + THE1A LTR MaLR 1 355 0 11507 92 10 19 chr5 21171340 21171847 -181913685 + THE1A-int LTR MaLR 1 511 -1069 2385 83 0 0 chr5 21171847 21172137 -181913395 - AluY SINE Alu -21 290 1 11507 92 10 19 chr5 21172137 21173223 -181912309 + THE1A-int LTR MaLR 511 1580 0 2710 67 32 3 chr5 21173223 21173568 -181911964 + THE1A LTR MaLR 1 355 0 1435 189 88 1 chr5 21173653 21173955 -181911577 - L1MB2 LINE L1 -7 6164 5837 1646 178 28 0 chr5 21174570 21174857 -181910675 - AluJb SINE Alu -17 295 1 828 207 5 5 chr5 21174991 21175179 -181910353 + L1MB3 LINE L1 5986 6173 -10 1974 104 3 10 chr5 21175281 21175579 -181909953 - AluSp SINE Alu -14 299 4 395 202 225 23 chr5 21175671 21175800 -181909732 - MER5A DNA MER1_type -21 168 14 270 81 0 0 chr5 21176244 21176281 -181909251 + (CCCCCT)n Simple_repeat Simple_repeat 5 41 0 21 36 0 0 chr5 21176293 21176321 -181909211 + AT_rich Low_complexity Low_complexity 1 28 0 1619 145 0 30 chr5 21176322 21176619 -181908913 - AluSx SINE Alu -24 288 1 915 197 82 41 chr5 21176627 21176866 -181908666 - AluJo SINE Alu -24 288 35 2123 82 0 50 chr5 21176866 21177185 -181908347 + AluY SINE Alu 1 303 -8 915 197 82 41 chr5 21177185 21177214 -181908318 - AluJo SINE Alu -277 35 9 2126 87 0 10 chr5 21177586 21177885 -181907647 - AluY SINE Alu -15 296 1 386 216 0 0 chr5 21179683 21179757 -181905775 - MER116 DNA Mariner -6 74 1 477 0 0 0 chr5 21180151 21180204 -181905328 + (TG)n Simple_repeat Simple_repeat 2 54 0 600 176 91 30 chr5 21180204 21180363 -181905169 - L1MB4 LINE L1 -7 6173 6005 1353 114 3 70 chr5 21180364 21180702 -181904830 - AluSx SINE Alu 0 312 21 1714 182 0 0 chr5 21182129 21182431 -181903101 - AluJb SINE Alu -10 302 1 25 0 0 0 chr5 21183666 21183691 -181901841 + AT_rich Low_complexity Low_complexity 1 25 0 269 309 47 54 chr5 21184289 21184438 -181901094 - MIR SINE MIR -74 188 41 2169 92 0 20 chr5 21184660 21184964 -181900568 - AluSq SINE Alu -15 298 1 559 253 53 24 chr5 21185091 21185261 -181900271 + MER5B DNA MER1_type 3 177 -1 189 147 0 0 chr5 21185463 21185497 -181900035 + (TCCA)n Simple_repeat Simple_repeat 3 36 0 338 299 53 48 chr5 21185668 21185855 -181899677 + MER5A DNA MER1_type 2 189 0 242 143 0 0 chr5 21186451 21186486 -181899046 + MLT1A1 LTR MaLR 1 35 -330 1531 178 8 4 chr5 21186499 21186763 -181898769 - AluJo SINE Alu -26 286 22 1914 179 24 3 chr5 21186777 21187106 -181898426 + MLT1A1 LTR MaLR 26 361 -4 1989 139 0 0 chr5 21187275 21187570 -181897962 - AluSg SINE Alu -15 295 1 180 0 0 0 chr5 21187789 21187809 -181897723 + (T)n Simple_repeat Simple_repeat 1 20 0 800 215 143 5 chr5 21187926 21188135 -181897397 + MER58 DNA MER1_type 1 238 -2182 332 265 59 56 chr5 21188333 21188483 -181897049 + MER5B DNA MER1_type 5 165 -24 798 239 11 37 chr5 21188582 21188770 -181896762 - MER5A DNA MER1_type 0 189 7 305 222 201 21 chr5 21189406 21189550 -181895982 + MER96 DNA MER1_type? 4 173 -2 2027 112 31 0 chr5 21189691 21189977 -181895555 - AluSx SINE Alu -17 295 1 203 314 0 0 chr5 21190630 21190681 -181894851 + L3 LINE CR1 326 376 -1201 2072 119 3 3 chr5 21191201 21191504 -181894028 - AluSq SINE Alu -10 303 1 225 0 0 0 chr5 21191508 21191533 -181893999 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1282 205 38 40 chr5 21191553 21191900 -181893632 - L1MB8 LINE L1 -37 6141 5796 1435 257 150 2 chr5 21193920 21194434 -181891098 - MLT1E LTR MaLR -3 590 1 202 289 83 83 chr5 21194443 21194599 -181890933 + L2 LINE L2 2949 3104 -168 1802 168 0 3 chr5 21194866 21195164 -181890368 + AluJo SINE Alu 1 297 -15 2856 91 3 0 chr5 21196444 21196807 -181888725 - THE1B LTR MaLR 0 364 1 23 33 0 0 chr5 21196939 21196969 -181888563 + AT_rich Low_complexity Low_complexity 1 30 0 183 204 0 0 chr5 21197405 21197449 -181888083 + (TATATG)n Simple_repeat Simple_repeat 6 49 0 318 272 22 22 chr5 21197450 21197542 -181887990 + L1MC4 LINE L1 6613 6704 -1338 1984 105 3 7 chr5 21197544 21197830 -181887702 - AluSx SINE Alu -27 285 1 21 71 0 0 chr5 21197835 21197877 -181887655 + AT_rich Low_complexity Low_complexity 1 42 0 625 246 177 0 chr5 21198669 21198901 -181886631 + MER5C DNA MER1_type 8 280 -44 1483 155 45 38 chr5 21199394 21199685 -181885847 - AluJb SINE Alu -19 293 1 2277 86 0 16 chr5 21199821 21200134 -181885398 - AluSc SINE Alu -1 308 1 256 147 29 44 chr5 21200736 21200804 -181884728 + GA-rich Low_complexity Low_complexity 3 69 0 1901 211 21 0 chr5 21201423 21201802 -181883730 - MLT1B LTR MaLR -1 389 3 1874 149 3 0 chr5 21203028 21203337 -181882195 - AluSx SINE Alu -2 310 1 861 139 0 0 chr5 21203917 21204061 -181881471 - AluSg/x SINE Alu -2 308 165 215 188 0 14 chr5 21204652 21204721 -181880811 + CT-rich Low_complexity Low_complexity 1 68 0 2384 57 0 0 chr5 21204809 21205108 -181880424 + AluY SINE Alu 1 299 -12 1547 173 37 0 chr5 21205330 21205643 -181879889 - AluJo SINE Alu 0 323 1 22 0 0 0 chr5 21205645 21205667 -181879865 + AT_rich Low_complexity Low_complexity 1 22 0 2106 107 7 0 chr5 21206022 21206312 -181879220 - AluSg SINE Alu -18 292 1 328 261 17 9 chr5 21206321 21206436 -181879096 + T-rich Low_complexity Low_complexity 1 116 0 2269 91 0 0 chr5 21206857 21207155 -181878377 - AluSg SINE Alu -11 299 2 24 67 0 0 chr5 21207544 21207589 -181877943 + AT_rich Low_complexity Low_complexity 1 45 0 2211 98 0 0 chr5 21208384 21208680 -181876852 - AluSx SINE Alu -16 296 1 1596 135 4 11 chr5 21210465 21210731 -181874801 - AluJb SINE Alu -32 280 17 591 263 70 47 chr5 21210971 21211272 -181874260 - L1MC5 LINE L1 -44 7917 7610 2168 117 0 0 chr5 21211285 21211594 -181873938 - AluSx SINE Alu -3 309 1 1630 184 46 23 chr5 21211598 21211946 -181873586 + MLT1A1 LTR MaLR 10 365 0 436 246 109 0 chr5 21212741 21212879 -181872653 - MIR SINE MIR -95 167 15 1880 107 11 0 chr5 21213377 21213649 -181871883 + L1PB1 LINE L1 5797 6071 -80 1902 151 3 3 chr5 21214540 21214844 -181870688 + AluSx SINE Alu 1 304 -8 2041 135 0 0 chr5 21215801 21216112 -181869420 + AluSx SINE Alu 1 311 -1 2009 139 0 0 chr5 21216639 21216942 -181868590 - AluSx SINE Alu -9 303 1 224 282 13 0 chr5 21217238 21217316 -181868216 + (TCCA)n Simple_repeat Simple_repeat 3 81 0 1329 178 60 57 chr5 21217398 21217543 -181867989 + AluJo SINE Alu 1 144 -158 1570 109 5 0 chr5 21217543 21217763 -181867769 + AluSp SINE Alu 79 299 -14 1329 178 60 57 chr5 21217763 21217915 -181867617 + AluJo SINE Alu 144 299 -3 1842 154 0 25 chr5 21218040 21218359 -181867173 + AluJb SINE Alu 1 311 -1 1403 124 10 0 chr5 21218360 21218569 -181866963 + AluSg/x SINE Alu 86 296 -16 774 127 13 7 chr5 21218577 21218727 -181866805 + GA-rich Low_complexity Low_complexity 2 152 0 2728 165 35 17 chr5 21219371 21219717 -181865815 + L1MB8 LINE L1 5472 5810 -368 2111 117 0 0 chr5 21219717 21220016 -181865516 + AluSx SINE Alu 6 304 -8 2728 165 35 17 chr5 21220016 21220155 -181865377 + L1MB8 LINE L1 5810 5910 -268 1680 146 7 45 chr5 21220155 21220464 -181865068 + AluSx SINE Alu 1 297 -15 2728 165 35 17 chr5 21220464 21220522 -181865010 + L1MB8 LINE L1 5910 5965 -213 1126 160 9 41 chr5 21220539 21220758 -181864774 + L1MB7 LINE L1 5953 6164 -20 199 313 0 0 chr5 21221150 21221198 -181864334 + L2 LINE L2 3229 3276 -37 1616 180 0 7 chr5 21221474 21221779 -181863753 + AluSx SINE Alu 2 304 -8 2425 62 0 7 chr5 21222028 21222335 -181863197 + AluY SINE Alu 1 305 -6 2043 127 3 7 chr5 21222469 21222776 -181862756 + AluSx SINE Alu 2 307 -5 1131 220 52 12 chr5 21223117 21223497 -181862035 - L1MC3 LINE L1 -7 7778 7349 417 310 51 25 chr5 21223513 21223671 -181861861 + MIR SINE MIR 35 196 -66 414 0 0 0 chr5 21224869 21224915 -181860617 + (CA)n Simple_repeat Simple_repeat 2 47 0 697 176 0 0 chr5 21225300 21225408 -181860124 + FLAM_C SINE Alu 13 120 -23 2056 124 10 0 chr5 21225425 21225732 -181859800 + AluSx SINE Alu 1 310 -2 350 188 27 9 chr5 21226040 21226152 -181859380 + GA-rich Low_complexity Low_complexity 3 116 0 1123 202 22 45 chr5 21227320 21227519 -181858013 - MER33 DNA MER1_type -2275 310 119 2291 85 13 0 chr5 21227519 21227824 -181857708 - AluSq SINE Alu -4 309 1 1123 202 22 45 chr5 21227824 21227936 -181857596 - MER33 DNA MER1_type -2466 119 6 2035 86 39 0 chr5 21227989 21228269 -181857263 + AluSx SINE Alu 11 301 -11 1901 110 30 7 chr5 21228468 21228768 -181856764 + AluSq SINE Alu 1 307 -6 2120 120 0 0 chr5 21228832 21229141 -181856391 + AluSx SINE Alu 1 309 -3 2038 111 31 0 chr5 21229858 21230147 -181855385 - AluSx SINE Alu -14 298 1 1017 130 65 16 chr5 21231158 21231343 -181854189 - AluSq SINE Alu 0 313 120 903 97 60 8 chr5 21231782 21231916 -181853616 - AluSq SINE Alu -170 143 3 226 217 17 17 chr5 21231979 21232039 -181853493 - L2 LINE L2 0 3313 3254 510 252 31 117 chr5 21232126 21232245 -181853287 - MIR SINE MIR 0 262 169 2070 84 7 14 chr5 21232245 21232530 -181853002 + AluSg SINE Alu 3 285 -25 510 252 31 117 chr5 21232530 21232632 -181852900 - MIR SINE MIR -93 169 60 2788 209 49 17 chr5 21233020 21233765 -181851767 + MER21B LTR ERV1 1 816 -47 2360 58 0 0 chr5 21233765 21234058 -181851474 + AluY SINE Alu 1 293 -18 2788 209 49 17 chr5 21234058 21234087 -181851445 + MER21B LTR ERV1 816 843 -20 194 0 39 0 chr5 21234649 21234675 -181850857 + (CAGC)n Simple_repeat Simple_repeat 1 27 0 678 222 151 5 chr5 21235433 21235618 -181849914 - MER20 DNA MER1_type -5 214 3 2236 102 0 6 chr5 21235947 21236261 -181849271 + AluSx SINE Alu 1 312 0 202 297 81 27 chr5 21236362 21236436 -181849096 - MIR SINE MIR -183 79 2 1876 125 7 14 chr5 21237069 21237357 -181848175 + AluSx SINE Alu 1 286 -26 1986 109 36 0 chr5 21237364 21237662 -181847870 + AluSx SINE Alu 1 308 0 1284 160 15 0 chr5 21237914 21238120 -181847412 + L1MB5 LINE L1 5819 6027 -147 2477 107 3 50 chr5 21238134 21238345 -181847187 - THE1B LTR MaLR 0 364 177 2029 104 7 3 chr5 21238345 21238642 -181846890 + AluSg SINE Alu 1 298 -12 2477 107 3 50 chr5 21238642 21238812 -181846720 - THE1B LTR MaLR -187 177 1 2357 162 29 5 chr5 21238821 21239229 -181846303 + MSTB1 LTR MaLR 15 432 0 611 203 55 3 chr5 21239232 21239387 -181846145 + L1MB5 LINE L1 6022 6184 0 263 286 58 56 chr5 21239437 21239559 -181845973 - MIR SINE MIR -78 130 28 233 277 118 8 chr5 21239566 21239685 -181845847 + MIR SINE MIR 130 261 -1 620 295 34 54 chr5 21239716 21239979 -181845553 - MIR SINE MIR -5 257 3 476 183 0 0 chr5 21240183 21240265 -181845267 + FLAM SINE Alu 45 126 -17 1154 84 168 45 chr5 21240483 21240570 -181844962 - MER30 DNA MER1_type 0 230 155 1762 169 3 0 chr5 21240570 21240872 -181844660 + AluJb SINE Alu 2 304 -8 2275 79 10 0 chr5 21240874 21241166 -181844366 + AluSq SINE Alu 1 295 -18 198 0 0 0 chr5 21241171 21241193 -181844339 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1154 84 168 45 chr5 21241193 21241298 -181844234 - MER30 DNA MER1_type -78 152 4 486 230 40 40 chr5 21241315 21241467 -181844065 + Charlie8 DNA MER1_type 28 179 -2238 459 0 0 0 chr5 21241921 21241972 -181843560 + (CA)n Simple_repeat Simple_repeat 1 51 0 254 294 37 28 chr5 21244134 21244243 -181841289 + MIR3 SINE MIR 65 174 -34 2200 102 0 3 chr5 21244795 21245100 -181840432 + AluSx SINE Alu 1 304 -8 216 0 0 0 chr5 21245527 21245551 -181839981 + (A)n Simple_repeat Simple_repeat 1 24 0 1036 210 19 5 chr5 21246456 21246670 -181838862 - MER20 DNA MER1_type 0 219 3 1240 185 3 70 chr5 21246694 21247007 -181838525 + AluJo SINE Alu 1 292 -20 2401 84 6 0 chr5 21247614 21247925 -181837607 - AluSp SINE Alu 0 313 1 180 274 73 48 chr5 21248094 21248218 -181837314 - L3 LINE CR1 -155 1422 1296 2063 125 0 3 chr5 21248219 21248530 -181837002 + AluSx SINE Alu 1 310 -2 798 294 9 5 chr5 21248568 21248782 -181836750 + MIR SINE MIR 34 248 -14 2042 127 0 13 chr5 21248819 21248955 -181836577 + AluSx SINE Alu 1 137 -175 2177 109 0 0 chr5 21248955 21249249 -181836283 + AluSc SINE Alu 1 294 -15 2042 127 0 13 chr5 21249249 21249427 -181836105 + AluSx SINE Alu 137 311 -1 1492 243 120 24 chr5 21249442 21249947 -181835585 + L1MD3 LINE L1 5791 7977 -18 2104 92 3 3 chr5 21249960 21250287 -181835245 + AluSx SINE Alu 1 327 0 213 121 0 0 chr5 21250752 21250785 -181834747 + (A)n Simple_repeat Simple_repeat 1 33 0 726 178 64 99 chr5 21250862 21251064 -181834468 + MER20 DNA MER1_type 1 195 -24 2226 88 3 0 chr5 21251067 21251363 -181834169 + AluSx SINE Alu 1 297 -15 1849 168 0 0 chr5 21251883 21252192 -181833340 + AluJb SINE Alu 1 309 -3 2338 64 3 3 chr5 21252425 21252721 -181832811 - AluY SINE Alu -15 296 1 303 71 0 0 chr5 21252788 21252830 -181832702 + (CA)n Simple_repeat Simple_repeat 2 43 0 1694 186 0 0 chr5 21252945 21253246 -181832286 + AluJo SINE Alu 1 301 -11 363 228 124 41 chr5 21253627 21253772 -181831760 + L1ME LINE L1 5600 5756 -365 1396 198 98 76 chr5 21253861 21253968 -181831564 + Zaphod DNA AcHobo 2786 2889 -1142 2458 60 0 3 chr5 21253968 21254270 -181831262 - AluY SINE Alu -10 301 1 1396 198 98 76 chr5 21254270 21254606 -181830926 + Zaphod DNA AcHobo 2889 3246 -785 1825 94 0 4 chr5 21254606 21254851 -181830681 - AluSq SINE Alu -69 244 1 1396 198 98 76 chr5 21254851 21254958 -181830574 + Zaphod DNA AcHobo 3246 3349 -682 631 168 154 0 chr5 21254971 21255114 -181830418 - MER46A DNA MER2_type -9 227 63 638 209 87 15 chr5 21255114 21255310 -181830222 + L1MA4 LINE L1 6086 6295 -5 356 180 0 0 chr5 21255320 21255381 -181830151 - MER46A DNA MER2_type -175 61 1 1952 206 136 22 chr5 21255382 21255559 -181829973 + Zaphod DNA AcHobo 3349 3504 -527 1846 165 0 0 chr5 21255559 21255862 -181829670 + AluSx SINE Alu 1 303 -9 1952 206 136 22 chr5 21255862 21256286 -181829246 + Zaphod DNA AcHobo 3504 4019 -12 2242 73 0 0 chr5 21256444 21256761 -181828771 - AluY SINE Alu 0 311 1 22 35 0 0 chr5 21257320 21257349 -181828183 + AT_rich Low_complexity Low_complexity 1 29 0 1713 97 58 0 chr5 21257358 21257616 -181827916 - AluSx SINE Alu -25 287 15 2091 118 0 0 chr5 21257701 21258006 -181827526 + AluY SINE Alu 1 305 -6 2456 50 0 3 chr5 21258089 21258392 -181827140 - AluY SINE Alu -9 302 1 1067 219 13 17 chr5 21258590 21258828 -181826704 + MIR SINE MIR 1 237 -25 389 215 0 0 chr5 21258830 21258895 -181826637 + MER2 DNA MER2_type 1 65 -280 * 637 127 85 42 chr5 21258890 21259008 -181826524 + MER2 DNA MER2_type 223 345 0 187 293 181 17 chr5 21259786 21259902 -181825630 - MIR SINE MIR -15 247 113 2237 78 3 0 chr5 21260129 21260445 -181825087 + AluSp SINE Alu 1 317 0 252 210 16 48 chr5 21261472 21261534 -181823998 - L2 LINE L2 -18 3295 3236 1431 137 125 0 chr5 21261937 21262193 -181823339 - AluJb SINE Alu -24 288 1 916 205 95 0 chr5 21262287 21262487 -181823045 + MER20 DNA MER1_type 1 219 0 195 281 37 37 chr5 21263111 21263193 -181822339 + MIR3 SINE MIR 93 174 -34 30 0 0 0 chr5 21264603 21264633 -181820899 + GC_rich Low_complexity Low_complexity 1 30 0 279 217 0 89 chr5 21265436 21265593 -181819939 + (CCCCG)n Simple_repeat Simple_repeat 1 143 0 188 294 118 0 chr5 21266411 21266479 -181819053 + MER5C DNA MER1_type 248 323 -1 225 159 0 101 chr5 21266492 21266561 -181818971 + L2 LINE L2 2989 3050 -222 926 146 35 12 chr5 21267177 21267348 -181818184 + L1MC2 LINE L1 6168 6342 -2 348 247 94 47 chr5 21269745 21269830 -181815702 + MER45A DNA AcHobo 1 89 -89 1155 36 0 0 chr5 21269936 21270076 -181815456 + (TTCC)n Simple_repeat Simple_repeat 4 143 0 1819 103 14 14 chr5 21270076 21270357 -181815175 - AluSq SINE Alu -32 281 1 200 151 0 38 chr5 21270652 21270705 -181814827 + T-rich Low_complexity Low_complexity 3 53 0 1562 153 42 39 chr5 21271144 21271452 -181814080 - AluJo SINE Alu -3 309 1 401 206 0 0 chr5 21271683 21271756 -181813776 - MER45A DNA AcHobo -4 174 102 2186 106 0 10 chr5 21271759 21272070 -181813462 + AluSx SINE Alu 1 308 -4 627 204 0 0 chr5 21272084 21272192 -181813340 + FRAM SINE Alu 8 115 -61 641 159 0 19 chr5 21272216 21272323 -181813209 + U6 snRNA snRNA 1 105 -2 2088 118 0 3 chr5 21272351 21272656 -181812876 + AluSq SINE Alu 1 304 -9 2159 66 0 11 chr5 21272664 21272950 -181812582 + AluY SINE Alu 1 283 -28 1288 59 71 0 chr5 21272956 21273126 -181812406 - AluY SINE Alu -128 183 2 1233 142 20 32 chr5 21273137 21273390 -181812142 - L1MA3 LINE L1 0 6305 6056 404 242 117 62 chr5 21273430 21273558 -181811974 - MER45 DNA AcHobo -71 107 1 941 146 35 12 chr5 21275955 21276126 -181809406 - L1MC2 LINE L1 -2 6342 6168 225 159 0 101 chr5 21276742 21276811 -181808721 - L2 LINE L2 -222 3050 2989 188 294 118 0 chr5 21276824 21276892 -181808640 - MER5C DNA MER1_type -1 323 248 279 217 0 89 chr5 21277710 21277867 -181807665 + (CGGGG)n Simple_repeat Simple_repeat 1 143 0 30 0 0 0 chr5 21278670 21278700 -181806832 + GC_rich Low_complexity Low_complexity 1 30 0 195 281 37 37 chr5 21280109 21280191 -181805341 - MIR3 SINE MIR -34 174 93 916 205 95 0 chr5 21280815 21281015 -181804517 - MER20 DNA MER1_type 0 219 1 1444 137 125 0 chr5 21281109 21281365 -181804167 + AluJb SINE Alu 1 288 -24 252 210 16 48 chr5 21281772 21281834 -181803698 + L2 LINE L2 3236 3295 -18 2245 78 3 0 chr5 21282863 21283179 -181802353 - AluSp SINE Alu 0 317 1 200 293 181 17 chr5 21283406 21283522 -181802010 + MIR SINE MIR 113 247 -15 637 127 85 42 chr5 21284300 21284418 -181801114 - MER2 DNA MER2_type 0 345 223 389 215 0 0 chr5 21284413 21284478 -181801054 - MER2 DNA MER2_type -280 65 1 * 1088 214 13 17 chr5 21284480 21284718 -181800814 - MIR SINE MIR -25 237 1 2215 50 0 4 chr5 21284916 21285195 -181800337 + AluY SINE Alu 1 278 -33 198 0 0 0 chr5 21285195 21285217 -181800315 + (CA)n Simple_repeat Simple_repeat 1 22 0 1801 162 0 22 chr5 21286111 21286425 -181799107 - AluJb SINE Alu -5 307 1 317 294 42 34 chr5 21287174 21287293 -181798239 - MIR SINE MIR -59 203 84 230 132 19 0 chr5 21287497 21287550 -181797982 + (TA)n Simple_repeat Simple_repeat 1 54 0 1624 187 0 3 chr5 21287550 21287839 -181797693 - AluJb SINE Alu -20 292 5 779 267 20 0 chr5 21288121 21288316 -181797216 - MER58A DNA MER1_type 0 224 26 5367 84 95 4 chr5 21288968 21289725 -181795807 + LTR12 LTR ERV1 1 826 0 1713 141 20 17 chr5 21289963 21290260 -181795272 - AluSx SINE Alu -14 298 1 304 271 226 0 chr5 21290291 21290424 -181795108 + MER5A DNA MER1_type 14 176 -13 303 324 38 9 chr5 21290519 21290624 -181794908 - MER5A DNA MER1_type -35 154 47 227 320 86 23 chr5 21290520 21290648 -181794884 + MER5A DNA MER1_type 47 182 -7 * 2077 80 0 28 chr5 21290753 21291041 -181794491 - AluSc SINE Alu -14 295 16 823 0 63 0 chr5 21291716 21291843 -181793689 + (TA)n Simple_repeat Simple_repeat 2 136 0 1875 128 0 20 chr5 21291918 21292222 -181793310 + AluJb SINE Alu 1 298 -14 414 0 0 0 chr5 21292227 21292273 -181793259 + (CA)n Simple_repeat Simple_repeat 2 47 0 2090 109 3 0 chr5 21292420 21292723 -181792809 - AluSx SINE Alu -8 304 1 2488 33 0 13 chr5 21292930 21293230 -181792302 - AluY SINE Alu -15 296 1 309 89 0 0 chr5 21293451 21293496 -181792036 + (T)n Simple_repeat Simple_repeat 1 45 0 340 137 0 0 chr5 21293498 21293549 -181791983 - MER4E LTR ERV1 -66 700 650 1694 183 0 3 chr5 21293669 21293980 -181791552 - AluJo SINE Alu -2 310 1 482 270 72 69 chr5 21293991 21294073 -181791459 - HAL1b LINE L1 -1 1347 1267 2295 70 0 20 chr5 21294073 21294373 -181791159 + AluY SINE Alu 1 294 -17 482 270 72 69 chr5 21294373 21294608 -181790924 - HAL1b LINE L1 -81 1267 1029 289 167 30 121 chr5 21294624 21294699 -181790833 - HAL1b LINE L1 -535 813 753 1625 151 19 45 chr5 21294699 21294871 -181790661 - AluSx SINE Alu -9 303 141 2485 56 0 0 chr5 21294871 21295176 -181790356 - AluY SINE Alu -6 305 1 1625 151 19 45 chr5 21295176 21295314 -181790218 - AluSx SINE Alu -171 141 1 289 167 30 121 chr5 21295314 21295370 -181790162 - HAL1b LINE L1 -595 753 694 482 217 80 7 chr5 21295380 21295518 -181790014 - HAL1b LINE L1 -782 566 419 2184 94 3 3 chr5 21295529 21295837 -181789695 + AluY SINE Alu 1 308 -3 898 185 0 22 chr5 21295846 21296024 -181789508 + AluJb SINE Alu 133 306 -6 297 197 0 0 chr5 21296024 21296085 -181789447 + GA-rich Low_complexity Low_complexity 1 61 0 253 133 50 17 chr5 21296165 21296225 -181789307 + GA-rich Low_complexity Low_complexity 2 63 0 268 330 88 21 chr5 21296249 21296488 -181789044 - HAL1b LINE L1 -1005 343 89 243 265 161 108 chr5 21296720 21296872 -181788660 + MIR SINE MIR 1 144 -118 2341 77 0 6 chr5 21296872 21297185 -181788347 + AluY SINE Alu 1 311 0 243 265 161 108 chr5 21297185 21297213 -181788319 + MIR SINE MIR 144 169 -93 2290 78 0 10 chr5 21297213 21297522 -181788010 + AluY SINE Alu 1 306 -5 243 265 161 108 chr5 21297522 21297589 -181787943 + MIR SINE MIR 169 262 0 1515 176 10 17 chr5 21298400 21298701 -181786831 - AluJo SINE Alu -13 299 1 1919 139 0 0 chr5 21298818 21299131 -181786401 - AluSx SINE Alu 0 313 1 612 161 18 17 chr5 21299133 21299250 -181786282 - MLT1A1 LTR MaLR -11 374 250 655 131 49 33 chr5 21299261 21299383 -181786149 - MLT1A1 LTR MaLR -241 124 1 1661 144 4 0 chr5 21299635 21299891 -181785641 + AluSx SINE Alu 38 294 -18 392 275 93 103 chr5 21300102 21300393 -181785139 - L2 LINE L2 -844 2470 2183 1585 143 14 29 chr5 21300420 21300700 -181784832 + AluJo SINE Alu 1 276 -36 220 121 0 0 chr5 21300914 21300947 -181784585 + MER5A DNA MER1_type 138 170 -19 2022 104 7 14 chr5 21301091 21301380 -181784152 + AluSg SINE Alu 1 287 -23 259 43 22 22 chr5 21301383 21301429 -181784103 + (TG)n Simple_repeat Simple_repeat 1 46 0 1614 108 0 0 chr5 21301441 21301664 -181783868 + AluSq SINE Alu 1 223 -90 688 170 7 64 chr5 21301845 21301986 -181783546 + FLAM_C SINE Alu 1 133 0 2542 3 0 0 chr5 21302020 21302333 -181783199 + AluY SINE Alu 1 313 0 533 298 193 12 chr5 21302677 21303003 -181782529 - L3 LINE CR1 -24 1553 1169 2109 102 14 0 chr5 21303055 21303350 -181782182 - AluSp SINE Alu -14 299 1 1509 164 54 11 chr5 21303380 21303660 -181781872 + AluJo SINE Alu 1 292 -20 947 153 7 0 chr5 21303665 21303815 -181781717 - MLT1D LTR MaLR 0 505 355 975 179 31 20 chr5 21303846 21304041 -181781491 - MLT1D LTR MaLR -308 197 1 265 330 21 10 chr5 21304054 21304151 -181781381 - L3 LINE CR1 -595 982 885 632 197 210 108 chr5 21304165 21304536 -181780996 + MLT1I LTR MaLR 1 409 0 1877 108 32 4 chr5 21304559 21304838 -181780694 - AluSc SINE Alu -22 287 1 2239 75 3 36 chr5 21304850 21305157 -181780375 - AluSp SINE Alu -16 297 1 379 133 0 0 chr5 21305184 21305249 -181780283 - Alu SINE Alu -256 46 1 2065 114 0 3 chr5 21305417 21305715 -181779817 - AluSg SINE Alu -13 297 1 183 374 86 16 chr5 21305750 21305937 -181779595 - L3 LINE CR1 -1164 413 214 1467 203 0 7 chr5 21305977 21306273 -181779259 + AluSx SINE Alu 1 294 -18 2136 70 13 46 chr5 21306278 21306580 -181778952 - AluY SINE Alu -19 292 1 939 108 51 6 chr5 21306968 21307125 -181778407 + AluY SINE Alu 129 292 -19 1467 203 0 7 chr5 21307130 21307426 -181778106 - AluSx SINE Alu -18 294 1 183 374 86 16 chr5 21307466 21307653 -181777879 + L3 LINE CR1 214 413 -1164 2325 68 0 3 chr5 21307688 21307995 -181777537 + AluSg SINE Alu 1 306 -4 1815 148 33 0 chr5 21308096 21308399 -181777133 + AluSp SINE Alu 1 313 0 720 186 8 0 chr5 21308452 21308576 -181776956 - FLAM_C SINE Alu -17 126 2 201 373 0 15 chr5 21308646 21308713 -181776819 + MIR SINE MIR 3 68 -194 389 273 67 62 chr5 21308756 21308898 -181776634 + MIR SINE MIR 57 197 -65 2198 89 0 10 chr5 21308898 21309200 -181776332 + AluSg SINE Alu 1 299 -11 2186 105 0 0 chr5 21309202 21309497 -181776035 + AluSg SINE Alu 2 296 -14 389 273 67 62 chr5 21309497 21309545 -181775987 + MIR SINE MIR 197 251 -11 1039 183 10 14 chr5 21310678 21310886 -181774646 - MER45B DNA AcHobo 0 1040 834 939 66 0 0 chr5 21310886 21311007 -181774525 + AluY SINE Alu 175 295 -16 574 110 0 44 chr5 21311019 21311110 -181774422 - AluSc SINE Alu -13 296 210 1539 97 0 0 chr5 21311168 21311375 -181774157 + AluSq SINE Alu 12 218 -95 357 109 0 0 chr5 21311376 21311431 -181774101 + (GGGAA)n Simple_repeat Simple_repeat 4 58 0 239 93 70 0 chr5 21311431 21311474 -181774058 - MER45B DNA AcHobo -261 779 734 2490 194 104 75 chr5 21311482 21311581 -181773951 - MER45B DNA AcHobo -261 779 684 1443 208 7 10 chr5 21311581 21311870 -181773662 + AluJo SINE Alu 1 288 -24 2490 194 104 75 chr5 21311870 21311900 -181773632 - MER45B DNA AcHobo -356 684 656 2179 123 39 28 chr5 21311900 21312258 -181773274 - THE1B LTR MaLR -2 362 1 2490 194 104 75 chr5 21312258 21312884 -181772648 - MER45B DNA AcHobo -384 656 1 713 130 0 0 chr5 21313129 21313229 -181772303 + AluJ/FLAM SINE Alu 2 101 -211 1890 107 50 0 chr5 21313267 21313547 -181771985 - AluSg SINE Alu -14 296 3 32 0 0 0 chr5 21313552 21313584 -181771948 + AT_rich Low_complexity Low_complexity 1 32 0 2286 74 3 3 chr5 21313790 21314089 -181771443 + AluSg SINE Alu 2 300 -10 595 135 0 29 chr5 21314119 21314223 -181771309 - MER53 DNA DNA -88 101 1 1915 143 27 0 chr5 21314394 21314695 -181770837 + AluJb SINE Alu 1 309 -3 1619 207 139 20 chr5 21314823 21315282 -181770250 - MER69 DNA AcHobo -3 2523 2010 23 33 0 0 chr5 21315363 21315393 -181770139 + AT_rich Low_complexity Low_complexity 1 30 0 2459 39 3 26 chr5 21315394 21315704 -181769828 - AluY SINE Alu -8 303 1 2178 98 7 0 chr5 21315756 21316062 -181769470 - AluSc SINE Alu -1 308 1 686 126 0 0 chr5 21316062 21316157 -181769375 - AluJb SINE Alu -17 295 201 559 272 125 66 chr5 21316167 21316293 -181769239 - MER69 DNA AcHobo -763 463 346 1560 191 0 10 chr5 21316293 21316587 -181768945 + AluJb SINE Alu 1 291 -21 1941 89 0 41 chr5 21316592 21316927 -181768605 + AluSg SINE Alu 1 323 0 559 272 125 66 chr5 21316927 21316969 -181768563 - MER69 DNA AcHobo -883 343 305 1868 141 10 0 chr5 21316969 21317259 -181768273 - AluJb SINE Alu -19 293 1 2037 152 75 15 chr5 21317260 21317649 -181767883 + MLT2D LTR ERVL 3 414 0 559 272 125 66 chr5 21317649 21317878 -181767654 - MER69 DNA AcHobo -920 306 32 2550 131 81 2 chr5 21317917 21318314 -181767218 - LTR12 LTR ERV1 -234 480 53 253 231 0 0 chr5 21318314 21318366 -181767166 - LTR30 LTR ERV1 -670 52 1 595 277 55 82 chr5 21318420 21318588 -181766944 + L2 LINE L2 1537 1693 -1621 1987 118 3 3 chr5 21318588 21318885 -181766647 - AluSx SINE Alu -15 297 1 595 277 55 82 chr5 21318885 21319044 -181766488 + L2 LINE L2 1693 1855 -1459 251 192 121 61 chr5 21319078 21319177 -181766355 + MLT1J LTR MaLR 374 478 -33 21 36 0 0 chr5 21319281 21319309 -181766223 + AT_rich Low_complexity Low_complexity 1 28 0 1810 172 0 104 chr5 21319350 21319594 -181765938 - MLT1B LTR MaLR -4 386 205 2022 130 0 0 chr5 21319594 21319887 -181765645 - AluSg SINE Alu -17 293 1 1810 172 0 104 chr5 21319887 21320073 -181765459 - MLT1B LTR MaLR -185 205 1 1582 178 0 4 chr5 21320121 21320402 -181765130 + AluJo SINE Alu 21 300 -12 300 300 53 53 chr5 21320431 21320601 -181764931 - L1MEd LINE L1 -5643 476 307 1538 151 134 35 chr5 21320710 21320995 -181764537 - L1MC2 LINE L1 0 7995 7740 2116 100 28 0 chr5 21320995 21321286 -181764246 - AluSc SINE Alu -10 299 1 1538 151 134 35 chr5 21321286 21321361 -181764171 - L1MC2 LINE L1 -255 7740 6264 1807 124 7 0 chr5 21321382 21321657 -181763875 - AluSx SINE Alu -2 310 34 28 0 0 0 chr5 21321834 21321862 -181763670 + AT_rich Low_complexity Low_complexity 1 28 0 1204 179 93 7 chr5 21322558 21322838 -181762694 - AluJo SINE Alu -8 304 1 349 250 235 50 chr5 21322841 21323041 -181762491 - MIR SINE MIR -6 256 20 247 293 25 83 chr5 21323113 21323230 -181762302 + MIR SINE MIR 83 190 -72 2452 52 0 3 chr5 21323230 21323539 -181761993 + AluY SINE Alu 1 308 -3 247 293 25 83 chr5 21323539 21323578 -181761954 + MIR SINE MIR 190 230 -32 1215 114 0 47 chr5 21323609 21323845 -181761687 + AluSx SINE Alu 1 225 -87 1937 110 0 0 chr5 21324813 21325077 -181760455 - AluSg SINE Alu -45 265 2 2190 90 0 10 chr5 21325079 21325380 -181760152 - AluSg SINE Alu -12 298 1 401 290 94 7 chr5 21325384 21325522 -181760010 - MIR SINE MIR -56 206 57 201 373 0 15 chr5 21325565 21325632 -181759900 - MIR SINE MIR -194 68 3 720 186 8 0 chr5 21325708 21325832 -181759700 + FLAM_C SINE Alu 2 126 -17 1845 145 33 0 chr5 21325885 21326188 -181759344 - AluSp SINE Alu 0 313 1 2587 26 3 16 chr5 21326289 21326599 -181758933 - AluY SINE Alu -5 306 1 2131 118 3 7 chr5 21326607 21326912 -181758620 - AluSq SINE Alu -9 304 1 646 159 0 19 chr5 21326940 21327047 -181758485 - U6 snRNA snRNA -2 105 1 602 193 0 9 chr5 21327071 21327180 -181758352 - FRAM SINE Alu -61 115 8 2314 106 0 10 chr5 21327194 21327505 -181758027 - AluSx SINE Alu -4 308 1 403 206 0 0 chr5 21327508 21327581 -181757951 + MER45A DNA AcHobo 102 174 -4 1675 153 42 39 chr5 21327812 21328120 -181757412 + AluJo SINE Alu 1 309 -3 200 151 0 38 chr5 21328559 21328612 -181756920 + A-rich Low_complexity Low_complexity 3 53 0 1979 121 13 16 chr5 21328907 21329188 -181756344 + AluSq SINE Alu 1 282 -31 1103 42 0 7 chr5 21329188 21329330 -181756202 + (GGAA)n Simple_repeat Simple_repeat 4 144 0 1979 121 13 16 chr5 21329330 21329362 -181756170 + AluSq SINE Alu 282 313 0 280 288 0 0 chr5 21329370 21329450 -181756082 + L1MC/D LINE L1 5722 5801 -2007 323 271 224 47 chr5 21329453 21329821 -181755711 - MLT1H LTR MaLR 0 549 101 1551 153 113 11 chr5 21329821 21330095 -181755437 - AluSx SINE Alu -10 302 1 323 271 224 47 chr5 21330095 21330132 -181755400 - MLT1H LTR MaLR -448 101 72 1761 181 62 8 chr5 21330161 21330515 -181755017 - L1MB5 LINE L1 -13 6161 5789 915 151 87 6 chr5 21330531 21330703 -181754829 - MER30 DNA MER1_type -44 186 1 1341 131 100 0 chr5 21330703 21330932 -181754600 - L1MB5 LINE L1 -378 5796 5545 1353 66 52 104 chr5 21331064 21331135 -181754397 + AluSg/x SINE Alu 82 155 -156 2165 121 3 3 chr5 21331135 21331441 -181754091 + AluSx SINE Alu 1 306 -6 1353 66 52 104 chr5 21331441 21331610 -181753922 + AluSg/x SINE Alu 155 311 0 820 144 0 8 chr5 21331660 21331778 -181753754 + FLAM_C SINE Alu 2 118 -25 27 0 0 48 chr5 21331778 21331804 -181753728 + AT_rich Low_complexity Low_complexity 1 26 -14 2159 141 126 8 chr5 21331804 21332186 -181753346 + MSTA LTR MaLR 2 428 0 27 0 0 48 chr5 21332186 21332201 -181753331 + AT_rich Low_complexity Low_complexity 26 40 0 437 152 13 38 chr5 21332381 21332460 -181753072 + THE1C LTR MaLR 299 375 0 1541 131 11 69 chr5 21332460 21332735 -181752797 + MLT1B LTR MaLR 132 390 0 268 411 58 5 chr5 21332735 21332942 -181752590 - L2 LINE L2 -214 3058 2841 442 271 47 0 chr5 21332989 21333096 -181752436 + MER63 DNA MER1_type 2 739 -97 2392 89 0 16 chr5 21333099 21333414 -181752118 - AluY SINE Alu -1 310 1 1048 186 4 26 chr5 21333772 21334003 -181751529 - AluJb SINE Alu -2 310 85 1439 96 216 24 chr5 21334003 21334253 -181751279 - AluSg1 SINE Alu -7 302 5 310 243 77 163 chr5 21334292 21334630 -181750902 + L2 LINE L2 2834 3199 -114 790 267 42 9 chr5 21334630 21334847 -181750685 + MER58A DNA MER1_type 1 224 0 310 243 77 163 chr5 21334847 21334872 -181750660 + L2 LINE L2 3199 3225 -88 1742 130 102 128 chr5 21334872 21335047 -181750485 + MSTA LTR MaLR 1 179 -249 2100 121 0 0 chr5 21335047 21335328 -181750204 + AluSg SINE Alu 1 281 -29 1742 130 102 128 chr5 21335328 21335355 -181750177 + MSTA LTR MaLR 179 205 -223 2247 105 0 3 chr5 21335355 21335651 -181749881 + AluSx SINE Alu 1 295 -17 1742 130 102 128 chr5 21335651 21335819 -181749713 + MSTA LTR MaLR 205 362 -66 2344 100 0 7 chr5 21335819 21336128 -181749404 + AluSx SINE Alu 1 307 -5 1742 130 102 128 chr5 21336128 21336194 -181749338 + MSTA LTR MaLR 362 428 0 310 243 77 163 chr5 21336194 21336307 -181749225 + L2 LINE L2 3225 3270 -43 2542 52 0 10 chr5 21336338 21336646 -181748886 + AluY SINE Alu 1 305 -6 498 170 0 0 chr5 21336761 21336855 -181748677 + (TG)n Simple_repeat Simple_repeat 2 95 0 382 159 14 14 chr5 21336870 21336939 -181748593 - FRAM SINE Alu -29 137 69 707 228 41 0 chr5 21337077 21337248 -181748284 + MER58A DNA MER1_type 47 224 0 1736 187 0 3 chr5 21337529 21337818 -181747714 + AluJb SINE Alu 5 292 -20 211 130 37 0 chr5 21337818 21337872 -181747660 + (TA)n Simple_repeat Simple_repeat 1 56 0 269 294 42 34 chr5 21338076 21338195 -181747337 + MIR SINE MIR 84 203 -59 1917 162 0 22 chr5 21338944 21339258 -181746274 + AluJb SINE Alu 1 307 -5 198 0 0 0 chr5 21340152 21340174 -181745358 + (TG)n Simple_repeat Simple_repeat 1 22 0 2019 84 3 25 chr5 21340174 21340458 -181745074 - AluY SINE Alu -33 278 1 1993 90 4 0 chr5 21340590 21340835 -181744697 + AluSp SINE Alu 1 246 -67 3781 126 40 30 chr5 21340835 21341496 -181744036 - pTR5 LTR ERV1 -7 2431 366 894 191 4 49 chr5 21341596 21341821 -181743711 - pTR5 LTR ERV1 -1481 957 743 413 56 0 0 chr5 21341821 21341875 -181743657 + AluSp SINE Alu 243 296 -17 2060 97 57 17 chr5 21342025 21342324 -181743208 + AluSq SINE Alu 1 311 -2 2473 84 3 3 chr5 21343132 21343441 -181742091 - AluSx SINE Alu -3 309 1 212 309 0 56 chr5 21343703 21343829 -181741703 + GA-rich Low_complexity Low_complexity 4 122 0 2252 120 7 0 chr5 21344058 21344366 -181741166 + AluSx SINE Alu 1 310 -2 1785 148 56 3 chr5 21344377 21344661 -181740871 + AluJo SINE Alu 1 299 -13 1312 157 0 5 chr5 21346544 21346748 -181738784 - AluJo SINE Alu -24 288 86 2318 91 3 58 chr5 21346827 21346959 -181738573 + L1PB1 LINE L1 5809 5947 -204 2493 63 0 0 chr5 21346959 21347258 -181738274 + AluY SINE Alu 3 301 -10 2318 91 3 58 chr5 21347258 21347488 -181738044 + L1PB1 LINE L1 5947 6151 0 2529 53 0 7 chr5 21347889 21348193 -181737339 + AluY SINE Alu 1 302 -9 1971 143 6 22 chr5 21348380 21348694 -181736838 - AluJo SINE Alu -3 309 1 2376 94 0 3 chr5 21348827 21349134 -181736398 + AluSc SINE Alu 1 306 -3 1654 142 40 0 chr5 21349134 21349381 -181736151 + AluSq SINE Alu 1 257 -56 2276 67 42 0 chr5 21349503 21349787 -181735745 - AluY SINE Alu -15 296 1 665 170 64 38 chr5 21349788 21349979 -181735553 + L1MB3 LINE L1 5914 6104 -71 2051 146 0 0 chr5 21350677 21350978 -181734554 + AluSx SINE Alu 9 309 -3 625 275 59 13 chr5 21351237 21351473 -181734059 + MIR SINE MIR 15 261 -1 1181 248 77 57 chr5 21351943 21352175 -181733357 - L1MC5 LINE L1 -219 7742 7516 1632 157 44 31 chr5 21352175 21352468 -181733064 - AluJo SINE Alu -14 298 2 1181 248 77 57 chr5 21352468 21352888 -181732644 - L1MC5 LINE L1 -445 7516 7077 1465 113 34 0 chr5 21352933 21353137 -181732395 - AluSg/x SINE Alu -6 304 94 21 0 0 0 chr5 21353278 21353299 -181732233 + AT_rich Low_complexity Low_complexity 1 21 0 2443 89 0 6 chr5 21353690 21354004 -181731528 + AluSq SINE Alu 1 312 -1 1087 192 63 120 chr5 21355506 21355588 -181729944 - LTR52 LTR ERVL -3 418 333 1705 119 55 0 chr5 21355588 21355823 -181729709 - AluSx SINE Alu -32 280 33 1087 192 63 120 chr5 21355823 21356183 -181729349 - LTR52 LTR ERVL -88 333 1 185 56 0 56 chr5 21356341 21356377 -181729155 + (CAAAAA)n Simple_repeat Simple_repeat 1 34 0 2326 77 0 45 chr5 21356426 21356736 -181728796 + AluY SINE Alu 1 296 -15 2201 95 14 0 chr5 21356982 21357267 -181728265 + AluSx SINE Alu 1 289 -23 194 301 157 12 chr5 21357271 21357354 -181728178 - MIR3 SINE MIR -31 177 83 403 155 48 128 chr5 21357737 21357757 -181727775 - L1MC1 LINE L1 0 7769 7749 2308 98 0 3 chr5 21357757 21358054 -181727478 + AluSq SINE Alu 1 296 -17 403 155 48 128 chr5 21358054 21358709 -181726823 - L1MC1 LINE L1 -20 7749 7043 2219 113 0 20 chr5 21358709 21359010 -181726522 - AluSg SINE Alu -15 295 1 403 155 48 128 chr5 21359010 21359181 -181726351 - L1MC1 LINE L1 -726 7043 6132 180 228 0 0 chr5 21359185 21359242 -181726290 + (TCCA)n Simple_repeat Simple_repeat 2 58 0 347 237 6 0 chr5 21359279 21359435 -181726097 + (TCTA)n Simple_repeat Simple_repeat 4 160 0 935 199 26 60 chr5 21359453 21359638 -181725894 - L1MC3 LINE L1 -739 7046 6871 2449 59 13 23 chr5 21359638 21359944 -181725588 - AluY SINE Alu -8 303 1 935 199 26 60 chr5 21359944 21360024 -181725508 - L1MC3 LINE L1 -914 6871 6790 1709 120 11 34 chr5 21360124 21360390 -181725142 - AluSq SINE Alu -53 260 1 1752 178 13 3 chr5 21360612 21360916 -181724616 + AluJb SINE Alu 1 307 -5 1790 159 3 20 chr5 21361500 21361801 -181723731 + AluJo SINE Alu 6 301 -11 672 60 0 0 chr5 21362154 21362237 -181723295 - AluY SINE Alu -11 300 218 1515 66 0 11 chr5 21362237 21362418 -181723114 - AluY SINE Alu -132 179 1 1376 187 79 4 chr5 21362999 21363158 -181722374 - Tigger7 DNA MER2_type -1 2486 2340 2424 92 0 0 chr5 21363158 21363462 -181722070 + AluSx SINE Alu 1 304 -8 1376 187 79 4 chr5 21363462 21363580 -181721952 - Tigger7 DNA MER2_type -147 2340 2188 2164 126 7 7 chr5 21363894 21364204 -181721328 - AluSx SINE Alu -2 310 1 545 203 0 120 chr5 21364324 21364457 -181721075 + FLAM_A SINE Alu 5 121 -12 1118 156 0 0 chr5 21364466 21364639 -181720893 - AluSg/x SINE Alu -3 307 135 1466 158 43 84 chr5 21364661 21364983 -181720549 - AluJb SINE Alu -3 309 1 1544 208 0 3 chr5 21364985 21365269 -181720263 - AluJo SINE Alu -13 299 17 929 133 0 0 chr5 21365441 21365569 -181719963 + FLAM_C SINE Alu 6 133 -10 2464 58 0 19 chr5 21365573 21365884 -181719648 - AluY SINE Alu -6 305 1 1549 182 12 49 chr5 21466408 21466732 -181618800 - AluJb SINE Alu 0 312 1 221 95 0 48 chr5 21466740 21466782 -181618750 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 2045 117 17 3 chr5 21466793 21467084 -181618448 - AluSx SINE Alu -17 295 1 455 92 0 0 chr5 21467329 21467394 -181618138 + MER41B LTR ERV1 483 547 -88 231 211 132 13 chr5 21467514 21467590 -181617942 - L2 LINE L2 -1 3312 3228 2160 104 0 3 chr5 21467598 21467886 -181617646 - AluSx SINE Alu -12 300 14 631 242 163 8 chr5 21467993 21468330 -181617202 - L2 LINE L2 -249 3064 2673 442 261 78 58 chr5 21468902 21469159 -181616373 - MIR SINE MIR 0 262 1 2370 101 0 0 chr5 21469359 21469665 -181615867 - AluY SINE Alu -5 306 1 2319 104 3 0 chr5 21470111 21470419 -181615113 - AluSp SINE Alu -2 311 3 2127 133 0 3 chr5 21470419 21470719 -181614813 - AluJb SINE Alu -11 301 3 27 29 0 0 chr5 21470727 21470761 -181614771 + AT_rich Low_complexity Low_complexity 1 34 0 2270 104 7 3 chr5 21471179 21471478 -181614054 + AluSp SINE Alu 1 300 -13 2185 115 3 0 chr5 21471648 21471943 -181613589 - AluSx SINE Alu -16 296 1 29 0 0 0 chr5 21472151 21472180 -181613352 + AT_rich Low_complexity Low_complexity 1 29 0 29 70 0 0 chr5 21472229 21472286 -181613246 + AT_rich Low_complexity Low_complexity 1 57 0 947 87 109 0 chr5 21472462 21472600 -181612932 + AluSc SINE Alu 150 302 -7 22 35 0 0 chr5 21472926 21472955 -181612577 + AT_rich Low_complexity Low_complexity 1 29 0 257 188 31 0 chr5 21473889 21473953 -181611579 + CT-rich Low_complexity Low_complexity 3 68 0 2289 104 7 3 chr5 21473953 21474262 -181611270 - AluSx SINE Alu -2 310 1 277 211 0 0 chr5 21474720 21474772 -181610760 + LTR30 LTR ERV1 1 52 -670 1258 105 4 81 chr5 21474772 21474998 -181610534 + LTR12 LTR ERV1 94 284 -430 397 238 10 0 chr5 21474998 21475099 -181610433 + LTR30 LTR ERV1 552 653 -69 618 141 0 0 chr5 21475099 21475191 -181610341 + LTR12 LTR ERV1 623 714 0 957 192 0 6 chr5 21475283 21475450 -181610082 + FRAM SINE Alu 1 166 -10 2173 127 0 7 chr5 21475508 21475808 -181609724 + AluSq SINE Alu 1 298 -15 333 232 0 24 chr5 21476487 21476569 -181608963 - MIR3 SINE MIR -28 180 101 1220 183 46 13 chr5 21477389 21477685 -181607847 - LTR54 LTR ERV1 0 510 177 403 160 53 0 chr5 21477685 21477760 -181607772 - AluSc SINE Alu -143 166 88 361 240 41 25 chr5 21477760 21477881 -181607651 - LTR54B LTR ERV1 -375 123 1 1950 137 3 44 chr5 21478829 21479144 -181606388 + AluSx SINE Alu 1 302 -10 2437 91 0 0 chr5 21479181 21479490 -181606042 + AluY SINE Alu 1 309 -2 1953 125 3 16 chr5 21479585 21479888 -181605644 + AluSx SINE Alu 1 299 -13 822 83 18 0 chr5 21479959 21480068 -181605464 - HY1 scRNA scRNA -1 111 1 2147 114 0 3 chr5 21480555 21480861 -181604671 - AluSx SINE Alu -7 305 1 211 270 0 40 chr5 21481425 21481499 -181604033 + A-rich Low_complexity Low_complexity 4 74 0 2175 59 28 59 chr5 21481562 21481883 -181603649 + AluY SINE Alu 1 311 0 2069 94 3 24 chr5 21481948 21482246 -181603286 + AluSg SINE Alu 1 292 -18 447 284 80 12 chr5 21483143 21483305 -181602227 - MIR SINE MIR -22 240 68 242 325 51 38 chr5 21483375 21483532 -181602000 - L2 LINE L2 -613 2701 2543 1857 94 18 22 chr5 21483544 21483647 -181601885 + AluSq SINE Alu 33 135 -178 2218 75 0 0 chr5 21483647 21483962 -181601570 + AluY SINE Alu 1 315 0 1857 94 18 22 chr5 21483962 21484132 -181601400 + AluSq SINE Alu 135 307 -6 292 260 80 114 chr5 21484372 21484749 -181600783 + LTR16A1 LTR ERVL 2 365 -92 1875 146 37 89 chr5 21484750 21485094 -181600438 + MLT1B LTR MaLR 3 324 -66 1918 98 24 14 chr5 21485094 21485404 -181600128 - AluY SINE Alu 0 311 1 1875 146 37 89 chr5 21485404 21485463 -181600069 + MLT1B LTR MaLR 324 385 -5 460 220 0 10 chr5 21485467 21485567 -181599965 + LTR16A1 LTR ERVL 359 457 0 248 362 39 16 chr5 21486001 21486062 -181599470 + MIR3 SINE MIR 3 61 -147 1923 103 187 27 chr5 21486062 21486431 -181599101 - MSTA LTR MaLR 0 428 1 248 362 39 16 chr5 21486431 21486496 -181599036 + MIR3 SINE MIR 61 132 -76 180 97 0 0 chr5 21486514 21486545 -181598987 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 802 121 17 29 chr5 21487179 21487352 -181598180 + CT-rich Low_complexity Low_complexity 2 172 0 2105 120 0 3 chr5 21487354 21487663 -181597869 - AluSg SINE Alu -2 308 1 2130 97 3 3 chr5 21487839 21488128 -181597404 - AluSc SINE Alu -19 290 2 199 350 87 39 chr5 21488210 21488313 -181597219 + L2 LINE L2 3188 3295 -18 207 278 103 21 chr5 21488428 21488525 -181597007 + L2 LINE L2 3209 3313 0 2011 96 48 3 chr5 21488643 21488934 -181596598 - AluSg SINE Alu -6 304 1 1117 188 38 8 chr5 21489123 21489363 -181596169 + L1ME2 LINE L1 5910 6156 -8 253 355 58 25 chr5 21489628 21489749 -181595783 - MIR3 SINE MIR -78 130 6 430 146 45 0 chr5 21489750 21489860 -181595672 + CT-rich Low_complexity Low_complexity 1 115 0 2018 122 0 3 chr5 21489860 21490146 -181595386 - AluSx SINE Alu -27 285 1 340 303 97 14 chr5 21490198 21490343 -181595189 + MIR SINE MIR 40 196 -66 1853 128 3 3 chr5 21491152 21491476 -181594056 + AluJo SINE Alu 1 324 0 1547 142 4 18 chr5 21492397 21492672 -181592860 - AluJo SINE Alu -11 301 31 5254 81 135 7 chr5 21492672 21493404 -181592128 - LTR12 LTR ERV1 0 826 1 225 176 0 0 chr5 21493404 21493438 -181592094 - AluJo SINE Alu -268 34 1 22 0 0 0 chr5 21493949 21493971 -181591561 + AT_rich Low_complexity Low_complexity 1 22 0 1810 138 7 43 chr5 21494654 21494958 -181590574 + AluJb SINE Alu 1 293 -19 1820 217 127 55 chr5 21495698 21495917 -181589615 - L1MD2 LINE L1 0 6359 6157 189 0 0 0 chr5 21495917 21495938 -181589594 + (TG)n Simple_repeat Simple_repeat 2 22 0 1820 217 127 55 chr5 21495938 21496009 -181589523 - L1MD2 LINE L1 -202 6157 6093 1650 152 7 34 chr5 21496009 21496306 -181589226 + AluJo SINE Alu 1 289 -23 1820 217 127 55 chr5 21496306 21496625 -181588907 - L1MD2 LINE L1 -266 6093 5699 2169 116 3 0 chr5 21496625 21496927 -181588605 - AluSp SINE Alu -10 303 1 1820 217 127 55 chr5 21496927 21496951 -181588581 - L1MD2 LINE L1 -660 5699 5678 1752 145 0 7 chr5 21497078 21497367 -181588165 + AluSx SINE Alu 5 291 -21 22 0 0 0 chr5 21497373 21497395 -181588137 + AT_rich Low_complexity Low_complexity 1 22 0 1001 139 61 139 chr5 21497632 21497789 -181587743 + MER33 DNA MER1_type 8 125 -2460 1370 176 45 48 chr5 21497789 21498102 -181587430 + AluJo SINE Alu 1 312 0 1001 139 61 139 chr5 21498102 21498288 -181587244 + MER33 DNA MER1_type 125 324 0 226 316 0 0 chr5 21498293 21498350 -181587182 - MIR SINE MIR -131 131 75 1100 206 107 69 chr5 21498424 21498788 -181586744 - MSTD LTR MaLR -2 394 17 401 311 115 4 chr5 21499179 21499414 -181586118 - MIR SINE MIR 0 262 2 2243 101 0 3 chr5 21499602 21499910 -181585622 - AluSp SINE Alu -6 307 1 2395 62 0 0 chr5 21499921 21500225 -181585307 - AluY SINE Alu -7 304 1 2157 106 7 0 chr5 21500337 21500639 -181584893 - AluSx SINE Alu -8 304 1 812 215 29 17 chr5 21500786 21500958 -181584574 - MER58B DNA MER1_type 0 341 168 1975 103 48 0 chr5 21501009 21501301 -181584231 - AluSp SINE Alu -7 306 1 190 350 70 0 chr5 21501308 21501408 -181584124 - MIR SINE MIR -61 147 41 226 239 0 60 chr5 21501583 21501650 -181583882 - L1ME3A LINE L1 -143 6027 5965 569 288 37 12 chr5 21502017 21502180 -181583352 + MIR SINE MIR 77 243 -19 873 132 0 0 chr5 21502240 21502361 -181583171 - FLAM_C SINE Alu -22 121 1 195 338 13 60 chr5 21502365 21502516 -181583016 + L3 LINE CR1 638 781 -796 966 127 0 0 chr5 21502567 21502709 -181582823 + FLAM_C SINE Alu 1 142 -1 2314 84 3 0 chr5 21502722 21503021 -181582511 + AluSp SINE Alu 5 304 -9 903 38 0 0 chr5 21503032 21503138 -181582394 + AluY SINE Alu 1 106 -205 1198 173 0 41 chr5 21503138 21503381 -181582151 + pTR5 LTR ERV1 743 975 -1463 1488 51 0 30 chr5 21503392 21503589 -181581943 + AluY SINE Alu 107 297 -14 1276 150 165 49 chr5 21503643 21503970 -181581562 + MLT1A1 LTR MaLR 1 365 0 2126 102 7 3 chr5 21503981 21504285 -181581247 - AluSg SINE Alu -4 306 2 344 331 39 17 chr5 21504328 21504506 -181581026 + MIR SINE MIR 6 187 -75 531 333 59 13 chr5 21504776 21505082 -181580450 + L3b LINE CR1 1109 1428 -155 824 142 0 45 chr5 21505152 21505286 -181580246 + FLAM_C SINE Alu 2 129 -14 2139 104 0 25 chr5 21505295 21505611 -181579921 + AluY SINE Alu 1 308 -3 2201 100 7 0 chr5 21506196 21506495 -181579037 + AluSx SINE Alu 1 301 -11 627 202 0 0 chr5 21506595 21506699 -181578833 + MER58 DNA MER1_type 2 105 -236 901 227 0 18 chr5 21506704 21506929 -181578603 + AluJb SINE Alu 87 307 -5 802 89 0 12 chr5 21507098 21507215 -181578317 - L1ME3A LINE L1 -525 5647 5552 189 0 0 0 chr5 21507348 21507369 -181578163 + (CAA)n Simple_repeat Simple_repeat 2 22 0 2025 98 4 0 chr5 21507855 21508171 -181577361 - AluSq SINE Alu 0 325 9 742 105 0 53 chr5 21508980 21509170 -181576362 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1837 136 0 0 chr5 21509200 21509472 -181576060 - AluSx SINE Alu -39 273 2 1486 185 33 0 chr5 21510580 21510856 -181574676 - AluJo SINE Alu -23 289 5 369 327 19 0 chr5 21510947 21511054 -181574478 - MER81 DNA DNA 0 114 6 397 102 0 220 chr5 21511151 21511198 -181574334 - L1MB2 LINE L1 -7 6164 6108 1896 177 24 0 chr5 21511198 21511537 -181573995 + MER7A DNA MER2_type 2 346 0 2056 118 14 0 chr5 21511538 21511835 -181573697 - AluSx SINE Alu 0 312 12 397 102 0 220 chr5 21511835 21511903 -181573629 - L1MB2 LINE L1 -62 6109 6073 209 308 13 26 chr5 21512359 21512437 -181573095 + L2 LINE L2 3237 3313 0 1788 170 3 6 chr5 21512480 21512792 -181572740 - AluJo SINE Alu -1 311 1 2037 116 24 0 chr5 21513325 21513619 -181571913 - AluSx SINE Alu -10 302 2 1667 158 29 4 chr5 21513642 21513920 -181571612 - AluJo SINE Alu -27 285 1 591 295 119 15 chr5 21514035 21514303 -181571229 - LTR16A LTR ERVL -53 397 102 260 263 0 0 chr5 21514558 21514615 -181570917 + GA-rich Low_complexity Low_complexity 2 58 0 215 332 68 58 chr5 21515120 21515325 -181570207 + L2 LINE L2 365 571 -2743 2390 66 0 7 chr5 21515465 21515770 -181569762 + AluY SINE Alu 1 303 -8 1027 260 89 9 chr5 21515875 21516190 -181569342 - LTR16C LTR ERVL 0 491 152 2300 101 0 0 chr5 21516215 21516522 -181569010 + AluSq SINE Alu 1 307 -6 1042 340 113 37 chr5 21517185 21518181 -181567351 + L2 LINE L2 1904 2975 -339 202 295 36 62 chr5 21518376 21518488 -181567044 + L2 LINE L2 3125 3233 -80 1616 153 9 87 chr5 21518651 21518984 -181566548 - AluJo SINE Alu -5 307 1 540 122 98 0 chr5 21519342 21519424 -181566108 - 5S rRNA rRNA -31 90 1 192 256 0 0 chr5 21519598 21519637 -181565895 + L3b LINE CR1 1443 1481 -102 243 358 20 57 chr5 21519838 21520084 -181565448 + L2 LINE L2 2823 3059 -213 312 229 16 0 chr5 21520157 21520218 -181565314 + MER91B DNA MER1_type 1 62 -128 215 354 80 18 chr5 21520746 21520859 -181564673 + L2 LINE L2 3127 3246 -26 2323 52 10 0 chr5 21520988 21521279 -181564253 - AluSc SINE Alu -7 302 9 760 276 86 0 chr5 21521280 21521490 -181564042 - MIR SINE MIR -34 228 1 1674 185 3 0 chr5 21521647 21521964 -181563568 - AluJb SINE Alu 0 318 1 2156 101 0 0 chr5 21522584 21522872 -181562660 - AluSx SINE Alu -14 298 11 1503 188 0 21 chr5 21522939 21523221 -181562311 - AluJo SINE Alu -32 280 5 2363 75 0 3 chr5 21523451 21523758 -181561774 + AluSc SINE Alu 1 306 -3 1929 184 30 45 chr5 21524120 21524397 -181561135 - MLT1B LTR MaLR 0 390 110 2265 87 0 10 chr5 21524397 21524709 -181560823 - AluSc SINE Alu 0 309 1 1929 184 30 45 chr5 21524709 21524729 -181560803 - MLT1B LTR MaLR -280 110 91 2272 137 87 20 chr5 21524729 21525130 -181560402 - MSTA LTR MaLR 0 428 1 1929 184 30 45 chr5 21525130 21525227 -181560305 - MLT1B LTR MaLR -299 91 1 222 233 12 12 chr5 21525366 21525452 -181560080 + (TAA)n Simple_repeat Simple_repeat 2 87 0 1745 120 3 45 chr5 21526148 21526440 -181559092 - AluSx SINE Alu -19 293 14 1491 178 45 42 chr5 21527314 21527691 -181557841 - LTR37A LTR ERV1 -3 423 46 2174 89 0 3 chr5 21528001 21528292 -181557240 - AluSc SINE Alu 0 309 20 274 241 0 128 chr5 21528764 21528897 -181556635 - L1ME1 LINE L1 -18 6148 6033 2386 76 0 0 chr5 21528927 21529230 -181556302 - AluY SINE Alu -8 303 1 254 214 40 40 chr5 21529239 21529365 -181556167 + Charlie7 DNA MER1_type 2451 2576 -36 336 258 32 11 chr5 21530449 21530542 -181554990 + Charlie7 DNA MER1_type 2509 2603 -9 1931 116 13 26 chr5 21530956 21531259 -181554273 - AluSx SINE Alu -13 299 1 1792 158 7 3 chr5 21531291 21531583 -181553949 + AluJb SINE Alu 1 293 -19 2119 112 0 0 chr5 21532400 21532695 -181552837 + AluSx SINE Alu 1 295 -17 1891 125 0 23 chr5 21533350 21533655 -181551877 - AluSx SINE Alu -14 298 1 697 125 0 2 chr5 21533697 21533927 -181551605 + AluJb SINE Alu 12 295 -17 234 0 0 0 chr5 21533951 21533977 -181551555 + (CA)n Simple_repeat Simple_repeat 2 27 0 665 144 24 72 chr5 21533978 21534103 -181551429 - FLAM_C SINE Alu -23 120 2 1923 104 4 7 chr5 21534111 21534390 -181551142 - AluSc SINE Alu -2 307 30 810 250 71 98 chr5 21534531 21535074 -181550458 + L1MC4 LINE L1 6634 7142 -819 2294 217 32 62 chr5 21535107 21535653 -181549879 + L1ME1 LINE L1 5520 6044 -122 2016 108 3 3 chr5 21535653 21535939 -181549593 - AluSc SINE Alu -13 296 11 2294 217 32 62 chr5 21535939 21536056 -181549476 + L1ME1 LINE L1 6044 6163 -3 608 286 79 26 chr5 21536091 21536395 -181549137 + L1MC4a LINE L1 7110 7429 -379 2217 96 13 0 chr5 21536497 21536799 -181548733 + AluSc SINE Alu 3 308 -1 1197 108 6 0 chr5 21536845 21537011 -181548521 + AluSx SINE Alu 1 167 -145 240 208 62 0 chr5 21537039 21537087 -181548445 + L1MC4 LINE L1 7843 7893 -149 262 115 39 0 chr5 21537090 21537142 -181548390 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 333 262 78 19 chr5 21537235 21537338 -181548194 + MER5B DNA MER1_type 37 145 -33 891 213 105 35 chr5 21537372 21537658 -181547874 - MLT1G LTR MaLR -57 533 228 285 280 90 50 chr5 21537658 21537716 -181547816 - MER5A DNA MER1_type -8 181 116 2076 118 0 0 chr5 21537716 21538013 -181547519 + AluSx SINE Alu 1 297 -15 285 280 90 50 chr5 21538013 21538054 -181547478 - MER5A DNA MER1_type -73 116 78 2135 121 0 3 chr5 21538394 21538708 -181546824 - AluSq SINE Alu 0 313 1 2201 88 3 0 chr5 21539429 21539724 -181545808 - AluSx SINE Alu -16 296 1 836 240 13 69 chr5 21539832 21540065 -181545467 + MER58A DNA MER1_type 5 224 0 691 289 95 29 chr5 21540313 21540555 -181544977 + MIR SINE MIR 5 262 0 762 200 0 65 chr5 21540721 21540849 -181544683 + MER5A DNA MER1_type 2 120 -69 738 246 60 15 chr5 21540849 21541048 -181544484 + MER63A DNA MER1_type 3 210 0 762 200 0 65 chr5 21541048 21541074 -181544458 + MER5A DNA MER1_type 120 146 -43 260 282 127 0 chr5 21541134 21541205 -181544327 + MIR SINE MIR 21 100 -162 1945 100 14 11 chr5 21541632 21541933 -181543599 - AluSc SINE Alu 0 302 1 580 302 62 23 chr5 21542143 21542278 -181543254 + MLT1L LTR MaLR 10 138 -477 877 217 24 38 chr5 21542278 21542404 -181543128 + MER3 DNA MER1_type 1 127 -82 216 0 0 0 chr5 21542404 21542428 -181543104 + (TTTAA)n Simple_repeat Simple_repeat 4 27 0 1999 131 0 0 chr5 21542429 21542726 -181542806 - AluSx SINE Alu -15 297 1 877 217 24 38 chr5 21542726 21542809 -181542723 + MER3 DNA MER1_type 126 209 0 580 302 62 23 chr5 21542809 21542931 -181542601 + MLT1L LTR MaLR 138 277 -338 864 314 20 0 chr5 21543099 21543354 -181542178 - MIR SINE MIR -1 261 2 286 292 33 25 chr5 21543388 21543508 -181542024 + MLT1L LTR MaLR 494 614 -1 250 184 41 0 chr5 21544408 21544457 -181541075 - L2 LINE L2 -1 3312 3262 1808 148 7 3 chr5 21544478 21544768 -181540764 - AluSx SINE Alu -21 291 1 208 342 108 8 chr5 21544897 21545017 -181540515 - MIR SINE MIR -95 167 36 195 304 160 50 chr5 21545637 21545818 -181539714 - MIR SINE MIR -54 208 8 814 149 8 0 chr5 21545850 21545971 -181539561 - FLAM_A SINE Alu -11 122 1 202 341 12 47 chr5 21545985 21546070 -181539462 - MIR3 SINE MIR -34 174 93 201 39 0 0 chr5 21546253 21546279 -181539253 + (TG)n Simple_repeat Simple_repeat 1 26 0 246 156 0 52 chr5 21546682 21546695 -181538837 + A-rich Low_complexity Low_complexity 2 14 -60 953 167 12 24 chr5 21546695 21546863 -181538669 + FRAM SINE Alu 1 166 0 246 156 0 52 chr5 21546863 21546926 -181538606 + A-rich Low_complexity Low_complexity 14 74 0 1436 217 26 0 chr5 21547494 21547804 -181537728 - AluJo SINE Alu 0 318 1 253 154 0 46 chr5 21547841 21547906 -181537626 + CT-rich Low_complexity Low_complexity 2 63 0 279 190 0 0 chr5 21549245 21549303 -181536229 + (TG)n Simple_repeat Simple_repeat 1 58 0 578 315 75 4 chr5 21549304 21549545 -181535987 + MIR SINE MIR 4 261 -1 2192 95 7 0 chr5 21551332 21551637 -181533895 - AluSq SINE Alu -6 307 1 1491 198 113 19 chr5 21551657 21552081 -181533451 - MLT1C LTR MaLR -3 464 1 2196 107 0 0 chr5 21553929 21554227 -181531305 + AluSx SINE Alu 1 298 -14 422 289 75 46 chr5 21554713 21554886 -181530646 - L3b LINE CR1 -29 1554 1377 24 0 0 0 chr5 21555434 21555458 -181530074 + AT_rich Low_complexity Low_complexity 1 24 0 2136 93 3 7 chr5 21555458 21555747 -181529785 - AluSx SINE Alu -24 288 1 1157 257 118 22 chr5 21556031 21556490 -181529042 + MLT1D LTR MaLR 1 503 -2 2180 110 3 0 chr5 21556723 21557032 -181528500 - AluSg SINE Alu 0 310 1 1825 143 7 0 chr5 21557234 21557527 -181528005 + AluSq SINE Alu 5 299 -14 549 222 0 0 chr5 21557590 21557698 -181527834 + MIR SINE MIR 44 151 -111 511 127 13 0 chr5 21557698 21557777 -181527755 + MADE1 DNA Mariner 1 80 0 380 257 95 0 chr5 21557778 21557883 -181527649 + MIR SINE MIR 148 262 0 863 128 0 0 chr5 21559459 21559584 -181525948 + FLAM_C SINE Alu 3 127 -6 180 0 0 0 chr5 21559597 21559617 -181525915 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1753 147 3 11 chr5 21559624 21559945 -181525587 + AluJb SINE Alu 1 319 0 1267 186 35 17 chr5 21559945 21560203 -181525329 + MLT1D LTR MaLR 252 505 0 544 244 118 0 chr5 21560228 21560363 -181525169 - MER58B DNA MER1_type 0 341 191 1507 103 0 5 chr5 21560462 21560676 -181524856 + AluSg/x SINE Alu 85 297 -15 2019 123 0 3 chr5 21560694 21560979 -181524553 + AluSx SINE Alu 1 284 -28 216 67 0 0 chr5 21560979 21561009 -181524523 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 355 327 64 26 chr5 21561106 21561262 -181524270 + MIR3 SINE MIR 4 165 -43 885 160 70 6 chr5 21561284 21561440 -181524092 - FRAM SINE Alu 0 166 1 2053 97 0 7 chr5 21561645 21561934 -181523598 + AluSc SINE Alu 1 287 -22 213 121 0 0 chr5 21561934 21561967 -181523565 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 2002 132 13 10 chr5 21562207 21562342 -181523190 + AluSx SINE Alu 1 134 -178 1907 108 54 0 chr5 21562342 21562619 -181522913 + AluSp SINE Alu 1 292 -21 2002 132 13 10 chr5 21562619 21562794 -181522738 + AluSx SINE Alu 134 312 0 716 197 27 7 chr5 21562930 21563077 -181522455 - MER3 DNA MER1_type -43 166 17 210 37 0 0 chr5 21563649 21563676 -181521856 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 204 286 107 45 chr5 21564070 21564132 -181521400 - L3 LINE CR1 -7 1570 1513 8198 57 4 6 chr5 21564132 21565141 -181520391 + LTR13 LTR ERVK 1 1007 0 204 286 107 45 chr5 21565141 21565190 -181520342 - L3 LINE CR1 -64 1513 1452 1911 119 14 0 chr5 21565962 21566248 -181519284 - AluSg SINE Alu -20 290 1 1037 81 0 7 chr5 21566248 21566384 -181519148 - AluSq/x SINE Alu -178 135 1 1799 166 0 10 chr5 21566459 21566772 -181518760 - AluJb SINE Alu -2 310 1 2392 78 3 0 chr5 21566978 21567285 -181518247 - AluY SINE Alu -3 308 1 2254 86 3 0 chr5 21568311 21568615 -181516917 + AluSq SINE Alu 1 305 -8 572 284 70 74 chr5 21568783 21569026 -181516506 + MIR SINE MIR 21 262 0 1852 148 7 7 chr5 21569448 21569753 -181515779 - AluJb SINE Alu -7 305 1 559 157 167 9 chr5 21569870 21569978 -181515554 + FLAM_C SINE Alu 1 125 -8 465 309 125 17 chr5 21570128 21570423 -181515109 - MLT1I LTR MaLR -19 390 64 416 203 14 0 chr5 21570642 21570716 -181514816 + MER58 DNA MER1_type 2344 2418 -2 676 160 80 16 chr5 21570737 21570850 -181514682 + FLAM_C SINE Alu 1 124 -178 225 0 0 0 chr5 21570850 21570875 -181514657 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 676 160 80 16 chr5 21570875 21570886 -181514646 + FLAM_C SINE Alu 124 133 -169 1286 201 37 40 chr5 21571335 21571634 -181513898 + AluJo SINE Alu 5 302 0 2103 85 34 3 chr5 21571634 21571927 -181513605 - AluSq SINE Alu -10 303 2 348 235 73 89 chr5 21572133 21572548 -181512984 + L1MC4a LINE L1 5943 6325 -1483 2022 123 0 29 chr5 21572548 21572864 -181512668 + AluSq SINE Alu 1 307 -6 348 235 73 89 chr5 21572864 21572903 -181512629 + L1MC4a LINE L1 6325 6363 -1445 545 221 24 80 chr5 21573203 21573416 -181512116 - MLT1B LTR MaLR -12 378 178 1967 124 10 3 chr5 21573451 21573758 -181511774 - AluSc SINE Alu 0 309 1 2323 73 0 19 chr5 21573772 21574089 -181511443 - AluY SINE Alu 0 311 1 335 274 21 21 chr5 21574256 21574351 -181511181 - MER5B DNA MER1_type 0 178 84 1656 146 47 23 chr5 21574827 21575128 -181510404 - AluJb SINE Alu -4 308 1 238 242 32 32 chr5 21575201 21575263 -181510269 + MER5B DNA MER1_type 117 178 0 1181 183 35 4 chr5 21575395 21575624 -181509908 + AluJo SINE Alu 1 236 -76 2325 134 34 18 chr5 21575667 21576048 -181509484 + MER61D LTR ERV1 114 500 -1 379 176 0 15 chr5 21576048 21576116 -181509416 + AluJo SINE Alu 234 300 -2 2416 53 0 28 chr5 21576116 21576436 -181509096 + AluY SINE Alu 1 311 0 1657 178 39 43 chr5 21576838 21577254 -181508278 - pTR5 LTR ERV1 -1279 1159 746 425 82 33 0 chr5 21577271 21577332 -181508200 + AluJo SINE Alu 239 301 -10 1989 122 3 0 chr5 21577844 21578130 -181507402 + AluSx SINE Alu 1 287 -25 180 0 0 0 chr5 21578130 21578150 -181507382 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 197 338 0 29 chr5 21578606 21578674 -181506858 - L2 LINE L2 -24 3289 3224 363 291 97 84 chr5 21578879 21579428 -181506104 - L2 LINE L2 -1317 1997 1442 352 278 0 52 chr5 21579475 21579590 -181505942 + L2 LINE L2 3196 3304 -9 495 245 190 27 chr5 21579876 21580060 -181505472 + MER58C DNA MER1_type 2 215 0 2089 104 0 3 chr5 21580345 21580633 -181504899 + AluSq SINE Alu 1 287 -26 183 114 0 0 chr5 21580636 21580671 -181504861 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 1318 196 0 4 chr5 21580682 21580912 -181504620 + AluJo SINE Alu 1 229 -83 180 77 0 0 chr5 21580948 21580974 -181504558 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 812 248 73 100 chr5 21581325 21581868 -181503664 + L1MC4 LINE L1 6634 7142 -819 2333 217 32 60 chr5 21581901 21582446 -181503086 + L1ME1 LINE L1 5520 6044 -122 2125 109 3 3 chr5 21582446 21582731 -181502801 - AluSc SINE Alu -14 295 11 2333 217 32 60 chr5 21582731 21582848 -181502684 + L1ME1 LINE L1 6044 6163 -3 617 286 79 26 chr5 21582883 21583187 -181502345 + L1MC4a LINE L1 7110 7429 -379 2240 106 13 3 chr5 21583289 21583591 -181501941 + AluSc SINE Alu 3 307 -2 2271 74 7 3 chr5 21583789 21584072 -181501460 - AluY SINE Alu -24 287 4 406 168 117 97 chr5 21584075 21584271 -181501261 + L1MB8 LINE L1 5966 6165 -13 1752 81 0 5 chr5 21584488 21584710 -181500822 - AluSg/x SINE Alu -11 299 79 227 415 36 23 chr5 21584967 21585268 -181500264 - L3 LINE CR1 -1158 419 115 540 238 146 31 chr5 21585311 21585559 -181499973 + L1ME3A LINE L1 5671 5951 -211 257 258 16 0 chr5 21585679 21585741 -181499791 + L1ME3A LINE L1 6010 6072 -98 860 128 0 30 chr5 21587007 21587140 -181498392 + FLAM_C SINE Alu 11 139 -4 2383 81 3 0 chr5 21587145 21587441 -181498091 + AluY SINE Alu 1 297 -14 25 0 0 0 chr5 21587441 21587466 -181498066 + AT_rich Low_complexity Low_complexity 1 25 0 4452 123 70 20 chr5 21587481 21588223 -181497309 - MER4E LTR ERV1 0 779 1 225 0 0 0 chr5 21588504 21588529 -181497003 + (A)n Simple_repeat Simple_repeat 1 25 0 2525 63 0 0 chr5 21588820 21589119 -181496413 - AluSc SINE Alu -10 299 1 431 62 0 0 chr5 21589385 21589449 -181496083 + AluSp/q SINE Alu 243 306 -7 1450 132 23 39 chr5 21589449 21589756 -181495776 - MER4E-int LTR ERV1 -150 6608 6265 2605 66 0 0 chr5 21589756 21590061 -181495471 - AluY SINE Alu -6 305 1 1450 132 23 39 chr5 21590061 21590113 -181495419 - MER4E-int LTR ERV1 -493 6265 6214 453 121 0 0 chr5 21590117 21590183 -181495349 + LTR7 LTR ERV1 1 66 -384 412 204 16 0 chr5 21590328 21590418 -181495114 - L1P5 LINE L1 -473 5678 5585 648 225 46 0 chr5 21590520 21590671 -181494861 + MER33 DNA MER1_type 3 160 -164 537 163 85 47 chr5 21590676 21590805 -181494727 + AluJo SINE Alu 2 135 -177 1684 194 14 7 chr5 21590805 21591094 -181494438 + AluJo SINE Alu 1 291 -21 578 178 29 63 chr5 21591096 21591179 -181494353 + MER33 DNA MER1_type 196 271 -2353 1554 208 10 0 chr5 21591179 21591477 -181494055 - AluJo SINE Alu -11 301 1 578 178 29 63 chr5 21591477 21591567 -181493965 + MER33 DNA MER1_type 271 363 0 345 319 66 28 chr5 21591627 21591652 -181493880 + MIR SINE MIR 32 55 -207 1808 143 4 4 chr5 21591652 21591924 -181493608 - AluSx SINE Alu -40 272 1 345 319 66 28 chr5 21591924 21592111 -181493421 + MIR SINE MIR 55 252 -10 2440 170 0 57 chr5 21592839 21592890 -181492642 - L1MB3 LINE L1 0 6183 6131 2301 88 7 0 chr5 21592890 21593186 -181492346 - AluSc SINE Alu -3 306 9 2440 170 0 57 chr5 21593186 21593658 -181491874 - L1MB3 LINE L1 -52 6131 5690 1878 150 0 7 chr5 21593707 21593987 -181491545 + AluSx SINE Alu 1 278 -34 1874 130 3 27 chr5 21594228 21594520 -181491012 + AluJb SINE Alu 14 298 -14 2321 103 3 3 chr5 21595524 21595826 -181489706 + AluSg SINE Alu 1 302 -8 1835 141 6 28 chr5 21597752 21598071 -181487461 - AluJo SINE Alu 0 312 1 2338 92 3 0 chr5 21598567 21598860 -181486672 - AluSg SINE Alu -16 294 1 564 286 69 18 chr5 21599020 21599237 -181486295 + MIR SINE MIR 35 262 0 889 227 85 48 chr5 21599906 21600089 -181485443 - Charlie7 DNA MER1_type -1889 723 548 2258 107 0 0 chr5 21600089 21600379 -181485153 - AluSx SINE Alu -22 290 1 889 227 85 48 chr5 21600379 21600548 -181484984 - Charlie7 DNA MER1_type -2064 548 358 837 265 78 48 chr5 21601332 21601770 -181483762 - HAL1 LINE L1 -10 2497 2047 1578 274 172 35 chr5 21601931 21602104 -181483428 - HAL1 LINE L1 -698 1809 1661 1812 179 10 7 chr5 21602104 21602411 -181483121 + AluJb SINE Alu 1 308 -4 1578 274 172 35 chr5 21602411 21603050 -181482482 - HAL1 LINE L1 -846 1661 1111 1878 128 82 0 chr5 21603050 21603212 -181482320 - AluSq SINE Alu -5 308 161 477 0 0 0 chr5 21603212 21603265 -181482267 + (TG)n Simple_repeat Simple_repeat 2 54 0 1878 128 82 0 chr5 21603265 21603383 -181482149 - AluSq SINE Alu -152 161 5 1578 274 172 35 chr5 21603383 21603722 -181481810 - HAL1 LINE L1 -1396 1111 499 360 266 18 26 chr5 21604791 21604904 -181480628 - MLT1I LTR MaLR 0 409 298 542 296 31 0 chr5 21604943 21605105 -181480427 - MLT1I LTR MaLR -197 212 46 197 250 17 17 chr5 21605195 21605255 -181480277 - MIR SINE MIR -87 175 116 537 128 0 0 chr5 21605428 21605506 -181480026 - AluSg/x SINE Alu -20 292 215 2602 44 0 0 chr5 21605714 21606008 -181479524 - AluY SINE Alu -17 294 1 22 56 0 0 chr5 21606010 21606046 -181479486 + AT_rich Low_complexity Low_complexity 1 36 0 2364 43 22 0 chr5 21606340 21606641 -181478891 + AluY SINE Alu 1 307 0 324 70 0 0 chr5 21607536 21607579 -181477953 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1654 167 48 4 chr5 21607581 21607733 -181477799 - AluJb SINE Alu -30 282 111 235 0 57 0 chr5 21607733 21607768 -181477764 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1654 167 48 4 chr5 21607768 21607885 -181477647 - AluJb SINE Alu -201 111 1 1788 147 37 4 chr5 21608465 21608738 -181476794 + AluSx SINE Alu 1 282 -30 601 191 55 0 chr5 21609585 21609695 -181475837 - MLT1B LTR MaLR -7 383 268 1921 83 124 8 chr5 21609696 21609961 -181475571 - AluSg1 SINE Alu -13 296 1 1892 112 40 14 chr5 21610464 21610771 -181474761 - AluSx SINE Alu 0 314 1 274 319 178 24 chr5 21611401 21611784 -181473748 + L2 LINE L2 2824 3265 -7 2130 108 0 7 chr5 21613757 21614077 -181471455 + AluSx SINE Alu 1 318 0 2479 72 0 7 chr5 21615169 21615473 -181470059 - AluY SINE Alu -9 302 1 1136 72 144 0 chr5 21615880 21616047 -181469485 - MER30 DNA MER1_type -37 193 3 2356 90 0 3 chr5 21616175 21616476 -181469056 - AluSq SINE Alu -13 300 1 1972 75 0 43 chr5 21616977 21617282 -181468250 + AluY SINE Alu 1 292 -19 2190 79 54 0 chr5 21617451 21617731 -181467801 + AluSc SINE Alu 1 295 -14 2106 130 0 17 chr5 21618971 21619272 -181466260 + AluSx SINE Alu 1 296 -16 1535 155 14 25 chr5 21619823 21620100 -181465432 + L1MC1 LINE L1 6050 6323 -10 427 207 65 83 chr5 21620910 21621025 -181464507 + MIR SINE MIR 76 189 -73 2095 150 0 0 chr5 21621025 21621332 -181464200 + AluSx SINE Alu 1 307 -5 427 207 65 83 chr5 21621332 21621385 -181464147 + MIR SINE MIR 189 241 -21 21 57 0 0 chr5 21621430 21621465 -181464067 + AT_rich Low_complexity Low_complexity 1 35 0 534 209 37 15 chr5 21621555 21621685 -181463847 - MLT1A1 LTR MaLR 0 365 220 592 162 29 9 chr5 21621709 21621814 -181463718 - U6 snRNA snRNA 0 107 1 2143 106 3 3 chr5 21621855 21622172 -181463360 - AluSx SINE Alu 0 317 1 474 171 0 0 chr5 21622172 21622248 -181463284 - FRAM SINE Alu -35 141 66 297 100 0 0 chr5 21622255 21622305 -181463227 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 723 197 0 33 chr5 21622314 21622466 -181463066 - MLT1A1 LTR MaLR -218 147 1 2424 87 0 0 chr5 21623028 21623326 -181462206 + AluY SINE Alu 1 298 -13 1990 129 38 0 chr5 21624510 21624797 -181460735 + AluSx SINE Alu 1 298 -14 2608 56 3 0 chr5 21625421 21625727 -181459805 - AluY SINE Alu -4 307 1 290 204 11 34 chr5 21625770 21625858 -181459674 + (TGGA)n Simple_repeat Simple_repeat 1 86 0 304 181 60 43 chr5 21625858 21625974 -181459558 + L1MC4 LINE L1 7925 8042 0 1308 218 85 13 chr5 21627407 21627723 -181457809 - MER58B DNA MER1_type -2 339 1 569 220 90 40 chr5 21627731 21627908 -181457624 - MER5A DNA MER1_type 0 189 4 1955 136 35 0 chr5 21627959 21628245 -181457287 + AluSx SINE Alu 1 296 -16 318 150 0 163 chr5 21629395 21629438 -181456094 - THE1B LTR MaLR 0 375 349 2386 88 0 0 chr5 21629438 21629733 -181455799 + AluSc SINE Alu 1 295 -14 318 150 0 163 chr5 21629733 21629769 -181455763 - THE1B LTR MaLR -26 349 309 2071 124 17 3 chr5 21629786 21630084 -181455448 - AluSq SINE Alu -11 302 1 1060 112 82 12 chr5 21630084 21630254 -181455278 - THE1B LTR MaLR -181 183 2 1814 117 18 15 chr5 21630254 21630528 -181455004 - AluSx SINE Alu -37 275 1 32 43 0 0 chr5 21630970 21631016 -181454516 + AT_rich Low_complexity Low_complexity 1 46 0 4051 158 100 26 chr5 21631766 21632690 -181452842 + pTR5 LTR ERV1 742 2025 -413 355 183 56 75 chr5 21632690 21632797 -181452735 + LTR30 LTR ERV1 544 721 -73 1174 127 1 7 chr5 21632797 21632987 -181452545 + pTR5 LTR ERV1 75 396 -2042 2162 128 0 0 chr5 21633082 21633372 -181452160 + AluSx SINE Alu 1 290 -22 274 291 0 13 chr5 21633666 21633745 -181451787 - MIR3 SINE MIR -28 180 103 2396 88 3 0 chr5 21633965 21634261 -181451271 + AluSq SINE Alu 1 297 -16 1283 229 79 39 chr5 21634308 21634740 -181450792 + MLT2B1 LTR ERVL 3 414 0 270 300 100 0 chr5 21634795 21634885 -181450647 - L2 LINE L2 0 3313 3215 1684 153 75 14 chr5 21634886 21635180 -181450352 + AluJb SINE Alu 1 312 0 516 200 0 0 chr5 21635181 21635291 -181450241 + GA-rich Low_complexity Low_complexity 1 110 0 1980 139 0 20 chr5 21635304 21635636 -181449896 - AluSg SINE Alu 0 310 1 892 152 21 0 chr5 21635646 21635791 -181449741 - L1MB5 LINE L1 -8 6166 6019 1339 202 11 0 chr5 21635795 21636057 -181449475 - L1MB5 LINE L1 -250 5924 5660 205 215 62 15 chr5 21636165 21636201 -181449331 + MIR SINE MIR 195 228 -34 4607 63 10 0 chr5 21636201 21636784 -181448748 + L1PA14 LINE L1 5573 6161 0 205 215 62 15 chr5 21636784 21636812 -181448720 + MIR SINE MIR 228 262 0 215 73 49 0 chr5 21637024 21637065 -181448467 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 426 227 62 0 chr5 21639319 21639416 -181446116 + Tigger7 DNA MER2_type 1 103 -630 713 197 42 0 chr5 21639532 21639674 -181445858 + Tigger7 DNA MER2_type 118 265 -285 642 158 0 0 chr5 21639675 21639770 -181445762 + Tigger7 DNA MER2_type 2395 2489 -2 2173 122 10 0 chr5 21639930 21640226 -181445306 + AluSx SINE Alu 1 299 -13 250 278 0 0 chr5 21640811 21640865 -181444667 + polypurine Low_complexity Low_complexity 2 55 0 424 220 93 8 chr5 21640927 21641045 -181444487 - MIR SINE MIR -65 143 16 283 319 164 13 chr5 21641108 21641340 -181444192 + L1MC4a LINE L1 5650 5916 -1892 283 0 0 0 chr5 21642296 21642331 -181443201 + L1MA8 LINE L1 6237 6271 -20 184 165 0 38 chr5 21642717 21642796 -181442736 + (TTATA)n Simple_repeat Simple_repeat 2 77 0 340 273 98 74 chr5 21642938 21643037 -181442495 + Charlie8 DNA MER1_type 21 116 -225 2053 125 3 3 chr5 21643037 21643326 -181442206 + AluSx SINE Alu 8 296 -16 340 273 98 74 chr5 21643326 21643482 -181442050 + Charlie8 DNA MER1_type 116 282 -59 21 36 0 0 chr5 21644262 21644290 -181441242 + AT_rich Low_complexity Low_complexity 1 28 0 2145 105 10 20 chr5 21644305 21644601 -181440931 - AluSq SINE Alu -20 293 1 2207 112 0 7 chr5 21645779 21646097 -181439435 + AluSx SINE Alu 2 312 0 21 0 0 0 chr5 21646161 21646182 -181439350 + AT_rich Low_complexity Low_complexity 1 21 0 496 260 106 19 chr5 21646182 21646390 -181439142 - MIR SINE MIR -31 231 6 227 155 69 35 chr5 21646495 21646553 -181438979 - MLT2B1 LTR ERVL 0 515 456 352 189 11 11 chr5 21646595 21646685 -181438847 + (TA)n Simple_repeat Simple_repeat 1 90 0 319 215 0 151 chr5 21646723 21646816 -181438716 + Tigger3(Golem) DNA MER2_type 2 80 -2949 338 256 44 0 chr5 21646931 21647021 -181438511 + Tigger3(Golem) DNA MER2_type 2944 3037 0 1943 178 66 6 chr5 21647051 21647452 -181438080 - MLT2B1 LTR ERVL -44 471 1 367 268 0 0 chr5 21647811 21647882 -181437650 - LTR53 LTR ERVL 0 519 449 1982 120 4 4 chr5 21648472 21648748 -181436784 + AluSg SINE Alu 1 276 -34 842 104 48 0 chr5 21648748 21648873 -181436659 + AluY SINE Alu 174 304 -7 1840 154 31 0 chr5 21649192 21649478 -181436054 - AluJb SINE Alu -17 295 1 2000 127 0 23 chr5 21650127 21650426 -181435106 - AluSg SINE Alu -18 292 1 255 241 284 7 chr5 21650556 21650697 -181434835 + MER5A DNA MER1_type 9 188 -1 2173 121 16 0 chr5 21650908 21651213 -181434319 - AluSx SINE Alu -2 310 1 2035 140 13 0 chr5 21651689 21651997 -181433535 + AluSx SINE Alu 1 312 0 26 30 0 0 chr5 21652614 21652647 -181432885 + AT_rich Low_complexity Low_complexity 1 33 0 1993 169 0 6 chr5 21652867 21653181 -181432351 - AluJb SINE Alu 0 312 1 202 280 140 0 chr5 21653275 21653382 -181432150 - L2 LINE L2 -11 3302 3181 501 271 133 0 chr5 21653696 21653877 -181431655 - MIR SINE MIR -18 244 40 251 324 83 52 chr5 21654227 21654543 -181430989 + L2 LINE L2 74 402 -2912 2306 94 3 0 chr5 21654543 21654830 -181430702 - AluSx SINE Alu -12 300 13 248 354 89 15 chr5 21654874 21655269 -181430263 + L2 LINE L2 2554 2977 -337 2403 119 14 27 chr5 21655319 21655688 -181429844 + THE1B LTR MaLR 1 364 0 695 273 123 50 chr5 21655778 21656240 -181429292 - L2 LINE L2 0 3313 2818 537 229 121 0 chr5 21656278 21656418 -181429114 + MER45A DNA AcHobo 2 158 -20 838 329 45 26 chr5 21656464 21656662 -181428870 - L2 LINE L2 -526 2788 2595 2004 134 0 3 chr5 21656662 21656784 -181428748 + AluSx SINE Alu 12 133 -179 2174 103 24 0 chr5 21656784 21657075 -181428457 + AluSg SINE Alu 1 298 -12 2004 134 0 3 chr5 21657075 21657235 -181428297 + AluSx SINE Alu 133 293 -19 838 329 45 26 chr5 21657235 21657565 -181427967 - L2 LINE L2 -719 2595 2250 4411 173 18 35 chr5 21657571 21658086 -181427446 - L1MA7 LINE L1 -4 6287 5792 1604 169 68 14 chr5 21658086 21658381 -181427151 - AluJb SINE Alu -1 311 1 4411 173 18 35 chr5 21658381 21658760 -181426772 - L1MA7 LINE L1 -499 5792 5408 819 188 0 0 chr5 21658773 21658906 -181426626 - FLAM_C SINE Alu -10 133 1 293 213 32 85 chr5 21658909 21659003 -181426529 + L2 LINE L2 3184 3272 0 2502 84 3 0 chr5 21659300 21659609 -181425923 - AluSx SINE Alu -2 310 1 2150 112 17 0 chr5 21660290 21660584 -181424948 + AluSx SINE Alu 1 299 -13 747 62 0 0 chr5 21660976 21661073 -181424459 + (GGAA)n Simple_repeat Simple_repeat 1 97 0 180 0 0 0 chr5 21661324 21661344 -181424188 + (TG)n Simple_repeat Simple_repeat 2 21 0 197 0 0 67 chr5 21661435 21661465 -181424067 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 369 109 0 0 chr5 21662184 21662239 -181423293 + (TG)n Simple_repeat Simple_repeat 2 56 0 1852 149 10 3 chr5 21662242 21662530 -181423002 - AluSx SINE Alu -20 292 3 1570 177 9 40 chr5 21663062 21663384 -181422148 + AluSx SINE Alu 1 312 0 1664 150 52 36 chr5 21663667 21663974 -181421558 + AluJo SINE Alu 1 312 0 21 36 0 0 chr5 21665542 21665570 -181419962 + AT_rich Low_complexity Low_complexity 1 28 0 226 272 102 75 chr5 21666489 21666636 -181418896 - MIR3 SINE MIR -37 171 21 799 142 0 22 chr5 21666988 21667122 -181418410 - FLAM_C SINE Alu -2 131 1 195 69 0 0 chr5 21667331 21667360 -181418172 + (T)n Simple_repeat Simple_repeat 1 29 0 488 36 48 0 chr5 21668061 21668144 -181417388 + (GA)n Simple_repeat Simple_repeat 1 87 0 23 68 0 0 chr5 21668456 21668500 -181417032 + GC_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr5 21668511 21668548 -181416984 + GC_rich Low_complexity Low_complexity 1 37 0 874 177 6 0 chr5 21669050 21669208 -181416324 - AluJb SINE Alu -21 291 133 37 0 0 0 chr5 21670028 21670065 -181415467 + AT_rich Low_complexity Low_complexity 1 37 0 236 302 47 39 chr5 21671529 21671658 -181413874 - MIR SINE MIR -9 253 124 2234 118 3 10 chr5 21671990 21672303 -181413229 - AluSx SINE Alu -1 311 1 1802 132 75 0 chr5 21672666 21672971 -181412561 + AluSx SINE Alu 1 312 0 196 195 0 0 chr5 21673189 21673230 -181412302 + MIR SINE MIR 89 129 -133 25 0 0 0 chr5 21673230 21673255 -181412277 + AT_rich Low_complexity Low_complexity 1 25 0 2312 104 3 3 chr5 21673788 21674096 -181411436 + AluSp SINE Alu 1 308 -5 22 35 0 0 chr5 21675792 21675821 -181409711 + AT_rich Low_complexity Low_complexity 1 29 0 270 56 0 0 chr5 21676240 21676276 -181409256 + (A)n Simple_repeat Simple_repeat 1 36 0 2147 118 0 20 chr5 21676282 21676586 -181408946 + AluSg SINE Alu 5 302 -8 2193 96 10 35 chr5 21677255 21677569 -181407963 - AluSx SINE Alu -2 310 5 241 171 24 49 chr5 21680566 21680648 -181404884 + L1MA7 LINE L1 6146 6225 -66 886 122 0 15 chr5 21680667 21680798 -181404734 + FLAM_C SINE Alu 5 133 0 2542 63 0 3 chr5 21680951 21681252 -181404280 + AluY SINE Alu 1 300 -11 602 276 12 0 chr5 21681543 21681713 -181403819 - MIR SINE MIR -55 207 36 23 33 0 0 chr5 21683049 21683079 -181402453 + AT_rich Low_complexity Low_complexity 1 30 0 730 131 0 62 chr5 21683079 21683209 -181402323 - FLAM_C SINE Alu -11 122 1 2399 128 3 35 chr5 21684700 21685076 -181400456 + THE1B LTR MaLR 1 364 0 315 354 12 49 chr5 21685559 21685723 -181399809 - MER5A DNA MER1_type -29 160 3 253 286 31 31 chr5 21687434 21687532 -181398000 + MIR SINE MIR 47 144 -64 21 0 0 0 chr5 21689006 21689027 -181396505 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr5 21689997 21690019 -181395513 + AT_rich Low_complexity Low_complexity 1 22 0 1997 157 0 6 chr5 21690595 21690908 -181394624 + AluJb SINE Alu 1 311 -1 841 199 12 18 chr5 21691091 21691257 -181394275 + MER58B DNA MER1_type 177 341 0 258 344 26 7 chr5 21691604 21691755 -181393777 + MIR SINE MIR 45 198 -64 273 323 76 55 chr5 21692094 21692385 -181393147 + L2 LINE L2 2172 2468 -846 234 279 96 0 chr5 21692528 21692632 -181392900 + MLT1J LTR MaLR 225 338 -173 529 147 0 0 chr5 21692673 21692775 -181392757 - L1MA4 LINE L1 -5 6295 6194 584 128 0 0 chr5 21692782 21692884 -181392648 - L1MA4 LINE L1 -5 6295 6194 568 136 0 0 chr5 21692891 21692994 -181392538 - L1MA4 LINE L1 -5 6295 6193 383 301 24 0 chr5 21693023 21693146 -181392386 + MLT1J LTR MaLR 379 504 -7 2581 64 0 0 chr5 21693205 21693516 -181392016 + AluY SINE Alu 1 311 0 2160 117 3 19 chr5 21693862 21694170 -181391362 + AluSx SINE Alu 1 303 -9 1774 154 7 0 chr5 21696891 21697196 -181388336 - AluJb SINE Alu 0 315 9 2112 109 0 26 chr5 21697606 21697909 -181387623 - AluSg SINE Alu -15 295 1 192 277 54 45 chr5 21698220 21698332 -181387200 + MIR SINE MIR 21 133 -129 22 0 0 0 chr5 21698552 21698574 -181386958 + AT_rich Low_complexity Low_complexity 1 22 0 1713 137 7 26 chr5 21698783 21699054 -181386478 - AluSg SINE Alu -12 298 33 235 150 83 33 chr5 21699161 21699221 -181386311 + MER20 DNA MER1_type 155 217 -2 2371 79 23 0 chr5 21699855 21700159 -181385373 - AluY SINE Alu 0 311 1 3024 123 40 80 chr5 21700190 21700767 -181384765 + MER41A LTR ERV1 1 554 0 2042 119 10 16 chr5 21702007 21702333 -181383199 - AluSx SINE Alu 0 312 1 814 163 0 15 chr5 21702875 21703010 -181382522 - FLAM_C SINE Alu 0 133 1 2350 87 3 3 chr5 21703018 21703316 -181382216 - AluSx SINE Alu -14 298 1 1970 120 64 25 chr5 21703395 21703754 -181381778 + THE1C LTR MaLR 1 373 -2 2137 110 13 32 chr5 21704280 21704609 -181380923 - AluSx SINE Alu 0 331 9 505 143 0 0 chr5 21704702 21704779 -181380753 - L1MA8 LINE L1 -139 6152 6076 486 168 8 48 chr5 21704779 21704899 -181380633 + L1MA8 LINE L1 6169 6288 -3 21 0 0 0 chr5 21704902 21704923 -181380609 + AT_rich Low_complexity Low_complexity 1 21 0 508 114 0 0 chr5 21705133 21705203 -181380329 - AluS SINE Alu -238 75 6 1095 79 0 0 chr5 21705213 21705353 -181380179 - AluSg/x SINE Alu 0 310 171 1974 130 0 7 chr5 21705507 21705791 -181379741 - AluSx SINE Alu -30 282 1 1563 104 146 15 chr5 21705845 21706105 -181379427 - AluSq SINE Alu -9 294 1 2189 85 24 3 chr5 21706110 21706404 -181379128 - AluSx SINE Alu -12 300 1 847 267 14 0 chr5 21706500 21706721 -181378811 - MER58A DNA MER1_type 0 224 1 2654 84 3 11 chr5 21707497 21707864 -181377668 + LTR7 LTR ERV1 85 448 -2 9247 144 73 23 chr5 21707865 21708331 -181377201 - MER4B-int LTR ERV1 -543 6215 5774 2260 112 3 0 chr5 21708331 21708634 -181376898 - AluSx SINE Alu -8 304 1 9247 144 73 23 chr5 21708634 21709744 -181375788 - MER4B-int LTR ERV1 -984 5774 4549 1893 126 42 3 chr5 21709744 21710029 -181375503 - AluSg SINE Alu -14 296 1 9247 144 73 23 chr5 21710029 21710122 -181375410 - MER4B-int LTR ERV1 -2209 4549 4462 5982 119 30 45 chr5 21710146 21711710 -181373822 - pTR5 LTR ERV1 0 2438 743 2537 140 70 0 chr5 21711710 21712111 -181373421 - MER4B-int LTR ERV1 -2683 4075 3647 2218 101 20 0 chr5 21712111 21712409 -181373123 + AluSp SINE Alu 1 304 -9 429 279 108 29 chr5 21712528 21712768 -181372764 + MIR SINE MIR 1 259 -3 1435 242 37 67 chr5 21713138 21713252 -181372280 + L2 LINE L2 2166 2282 -1032 1861 162 3 10 chr5 21713252 21713555 -181371977 - AluJo SINE Alu -11 301 1 1435 242 37 67 chr5 21713555 21714011 -181371521 + L2 LINE L2 2282 2719 -595 189 74 0 0 chr5 21714017 21714044 -181371488 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2129 115 0 0 chr5 21714047 21714325 -181371207 - AluSx SINE Alu -29 283 6 1506 114 4 26 chr5 21714774 21715001 -181370531 - AluJb SINE Alu -4 308 87 491 220 61 45 chr5 21715020 21715152 -181370380 + L2 LINE L2 3180 3313 0 1864 123 0 4 chr5 21715262 21715514 -181370018 - AluSx SINE Alu -61 251 1 1018 111 7 0 chr5 21715514 21715649 -181369883 - AluSq/x SINE Alu -177 136 1 2102 103 10 10 chr5 21718179 21718469 -181367063 + AluSx SINE Alu 1 290 -22 1160 132 12 0 chr5 21718485 21718652 -181366880 + AluSg/x SINE Alu 125 293 -19 2272 90 27 7 chr5 21718652 21718952 -181366580 + AluSg SINE Alu 1 306 -4 622 239 149 0 chr5 21722519 21722707 -181362825 - MIR SINE MIR -38 224 9 180 0 0 0 chr5 21724489 21724509 -181361023 + (A)n Simple_repeat Simple_repeat 1 20 0 206 250 0 0 chr5 21724830 21724874 -181360658 + (TATATG)n Simple_repeat Simple_repeat 1 44 0 26 0 0 0 chr5 21727261 21727287 -181358245 + GC_rich Low_complexity Low_complexity 1 26 0 42 71 0 0 chr5 21727973 21728057 -181357475 + GC_rich Low_complexity Low_complexity 1 84 0 321 155 0 0 chr5 21728210 21728268 -181357264 + (CCG)n Simple_repeat Simple_repeat 2 59 0 460 310 0 22 chr5 21728289 21728473 -181357059 + C-rich Low_complexity Low_complexity 1 180 0 252 260 0 88 chr5 21728515 21728707 -181356825 + C-rich Low_complexity Low_complexity 3 177 0 459 113 0 0 chr5 21728752 21728832 -181356700 + (TC)n Simple_repeat Simple_repeat 1 80 0 995 132 20 93 chr5 21730224 21730428 -181355104 - MER20 DNA MER1_type -30 189 1 21 0 0 0 chr5 21730908 21730929 -181354603 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr5 21732098 21732122 -181353410 + AT_rich Low_complexity Low_complexity 1 24 0 279 146 73 18 chr5 21732185 21732240 -181353292 + MER20 DNA MER1_type 160 217 -2 815 272 25 0 chr5 21732871 21733110 -181352422 - AluSg/x SINE Alu 0 312 68 406 265 66 29 chr5 21733630 21733766 -181351766 - L1ME LINE L1 -5924 146 6 293 322 131 0 chr5 21733779 21733879 -181351653 - MIR SINE MIR -2 260 174 221 81 0 27 chr5 21733879 21733916 -181351616 + (CAT)n Simple_repeat Simple_repeat 2 37 0 293 322 131 0 chr5 21733916 21733998 -181351534 - MIR SINE MIR -88 174 54 2264 90 19 26 chr5 21734022 21734334 -181351198 - AluSg SINE Alu 0 310 1 2191 82 3 0 chr5 21734334 21734616 -181350916 - AluY SINE Alu -28 283 1 578 291 11 34 chr5 21734656 21734835 -181350697 - MER5B DNA MER1_type 0 178 4 1171 167 0 19 chr5 21735976 21736192 -181349340 - AluSx SINE Alu -98 214 3 350 319 9 0 chr5 21736481 21736597 -181348935 + Charlie2 DNA MER1_type 1908 2024 -838 875 206 6 0 chr5 21738175 21738335 -181347197 - AluSx SINE Alu -29 281 121 27557 133 14 15 chr5 21738366 21743538 -181341994 - L1PA8A LINE L1 0 6446 1223 234 62 0 0 chr5 21743538 21743570 -181341962 + (TTG)n Simple_repeat Simple_repeat 2 33 0 27557 133 14 15 chr5 21743570 21744788 -181340744 - L1PA8A LINE L1 -5223 1223 5 718 158 108 0 chr5 21744789 21744909 -181340623 - AluSx SINE Alu -178 134 2 1257 259 87 65 chr5 21744909 21745892 -181339640 - L1M4b LINE L1 -4611 2527 1350 224 188 87 58 chr5 21746236 21746305 -181339227 + MIR SINE MIR 80 150 -112 2091 139 3 0 chr5 21746403 21746705 -181338827 - AluSq SINE Alu -10 303 1 2393 87 3 3 chr5 21747320 21747631 -181337901 + AluY SINE Alu 1 311 0 192 77 0 0 chr5 21747936 21747962 -181337570 + (TTA)n Simple_repeat Simple_repeat 1 26 0 485 324 104 5 chr5 21747966 21748188 -181337344 - MIR SINE MIR -8 254 11 210 245 128 75 chr5 21748233 21748327 -181337205 - MIR SINE MIR -92 116 18 329 247 0 13 chr5 21748419 21748496 -181337036 - MLT1F1 LTR MaLR -450 117 42 1969 164 48 8 chr5 21748496 21748727 -181336805 - L1MC3 LINE L1 -695 7090 6837 3110 107 9 24 chr5 21748727 21749194 -181336338 - L1PA15 LINE L1 0 6165 5706 1969 164 48 8 chr5 21749194 21749334 -181336198 - L1MC3 LINE L1 -948 6837 6704 550 270 53 11 chr5 21749364 21749553 -181335979 + L1ME3A LINE L1 5964 6160 -10 186 103 0 0 chr5 21749568 21749597 -181335935 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 328 280 68 34 chr5 21749634 21749752 -181335780 + MIR SINE MIR 45 166 -96 209 219 0 16 chr5 21749824 21749853 -181335679 + (TA)n Simple_repeat Simple_repeat 2 30 -34 2759 220 31 32 chr5 21749853 21750507 -181335025 - MER82 DNA MER2_type 0 653 1 209 219 0 16 chr5 21750507 21750541 -181334991 + (TA)n Simple_repeat Simple_repeat 30 64 0 183 245 102 0 chr5 21750738 21750787 -181334745 - L2 LINE L2 -65 3248 3195 834 309 39 21 chr5 21752102 21752490 -181333042 + LTR16B LTR ERVL 66 460 -4 330 348 18 9 chr5 21753379 21753491 -181332041 + MIR SINE MIR 18 130 -78 264 161 0 32 chr5 21753910 21753972 -181331560 + L1MC4 LINE L1 6646 6705 -1337 207 229 0 0 chr5 21753972 21754033 -181331499 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 25 51 0 0 chr5 21754078 21754117 -181331415 + AT_rich Low_complexity Low_complexity 1 39 0 210 143 0 0 chr5 21754424 21754459 -181331073 + (A)n Simple_repeat Simple_repeat 1 35 0 1592 126 3 86 chr5 21755000 21755143 -181330389 + LTR8 LTR ERV1 1 154 -537 2474 70 0 0 chr5 21755143 21755443 -181330089 - AluY SINE Alu -11 300 1 8021 62 4 2 chr5 21755443 21757184 -181328348 - L1PA6 LINE L1 -6 6148 4405 1592 126 3 86 chr5 21757184 21757341 -181328191 + LTR8 LTR ERV1 152 277 -414 874 115 43 14 chr5 21757360 21757499 -181328033 + LTR8 LTR ERV1 549 691 0 180 154 0 0 chr5 21757604 21757630 -181327902 + MER5A DNA MER1_type 1 26 -163 4025 138 19 12 chr5 21757631 21758083 -181327449 + L1PA16 LINE L1 5524 5984 -182 2062 134 0 0 chr5 21758083 21758424 -181327108 + AluSx SINE Alu 1 341 0 4025 138 19 12 chr5 21758424 21758608 -181326924 + L1PA16 LINE L1 5984 6165 -1 761 238 24 0 chr5 21758614 21758778 -181326754 + MER5A DNA MER1_type 11 178 -11 204 294 73 0 chr5 21758880 21758948 -181326584 - MIR SINE MIR -64 144 72 327 49 0 0 chr5 21759319 21759360 -181326172 + (TG)n Simple_repeat Simple_repeat 1 41 0 1968 136 37 0 chr5 21760866 21761161 -181324371 - AluSx SINE Alu -6 306 1 1696 191 3 7 chr5 21761166 21761470 -181324062 - AluJb SINE Alu -9 303 1 191 227 0 0 chr5 21762691 21762735 -181322797 + L2 LINE L2 3270 3313 0 1461 158 31 15 chr5 21764322 21764582 -181320950 + L1MC1 LINE L1 6070 6333 0 24 77 0 0 chr5 21765706 21765758 -181319774 + AT_rich Low_complexity Low_complexity 1 52 0 527 248 55 14 chr5 21765844 21765989 -181319543 + L1ME1 LINE L1 6011 6161 -5 2795 96 3 0 chr5 21766259 21766613 -181318919 - THE1A LTR MaLR 0 355 1 2319 74 0 0 chr5 21766743 21767064 -181318468 + AluY SINE Alu 1 321 0 2046 231 13 18 chr5 21767070 21767520 -181318012 - LTR40b LTR ERVL -14 448 1 206 333 131 0 chr5 21768146 21768245 -181317287 + L2 LINE L2 3161 3272 0 4222 125 49 29 chr5 21768279 21768998 -181316534 + L1MA8 LINE L1 5542 6274 -17 297 0 0 0 chr5 21770506 21770539 -181314993 + (CA)n Simple_repeat Simple_repeat 1 33 0 541 338 96 39 chr5 21770541 21771177 -181314355 + L2 LINE L2 339 1010 -2304 327 370 39 8 chr5 21771420 21771547 -181313985 + L2 LINE L2 3134 3264 -8 237 209 0 0 chr5 21771547 21771590 -181313942 + (CA)n Simple_repeat Simple_repeat 1 43 0 180 0 0 0 chr5 21772906 21772926 -181312606 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2559 164 58 14 chr5 21773894 21774448 -181311084 - LTR1 LTR ERV1 0 785 208 241 267 11 11 chr5 21774844 21774934 -181310598 + L1MEc LINE L1 787 876 -5520 439 249 89 69 chr5 21775202 21775563 -181309969 - MLT1E3 LTR MaLR 0 624 257 1658 174 0 13 chr5 21776015 21776326 -181309206 - AluSx SINE Alu -3 309 3 365 310 9 0 chr5 21776615 21776731 -181308801 + Charlie2 DNA MER1_type 1908 2024 -838 443 249 89 69 chr5 21778635 21778996 -181306536 - MLT1E3 LTR MaLR 0 624 257 229 278 41 0 chr5 21779122 21779219 -181306313 - MLT1E3 LTR MaLR -547 107 7 1461 207 3 13 chr5 21779467 21779767 -181305765 - AluSx SINE Alu -13 299 3 804 156 8 0 chr5 21779991 21780119 -181305413 + AluSq/x SINE Alu 1 129 -183 244 203 153 17 chr5 21780473 21780591 -181304941 + Charlie7 DNA MER1_type 23 156 -2456 1603 195 3 0 chr5 21780657 21780939 -181304593 + AluJb SINE Alu 1 283 -29 4085 183 35 26 chr5 21781962 21782926 -181302606 + L1PB3 LINE L1 5157 6127 -27 339 236 34 11 chr5 21783129 21783218 -181302314 + L1PB3 LINE L1 6064 6154 0 2078 122 7 7 chr5 21783637 21783932 -181301600 - AluSc SINE Alu -14 295 1 1221 240 0 24 chr5 21786017 21786309 -181299223 + AluJb SINE Alu 5 289 -23 4097 201 31 50 chr5 21787176 21788438 -181297094 + L1MA8 LINE L1 5032 6265 -26 1234 266 16 16 chr5 21788457 21788840 -181296692 + L1MC1 LINE L1 5946 6328 -5 1114 271 29 4 chr5 21789948 21790229 -181295303 + AluJb SINE Alu 1 288 -14 268 331 27 14 chr5 21791092 21791240 -181294292 + L1MCa LINE L1 6 155 -6271 4579 199 40 25 chr5 21791273 21792786 -181292746 + L1MA8 LINE L1 4727 6266 -25 1402 262 9 5 chr5 21792812 21793174 -181292358 + L1MC1 LINE L1 5961 6316 -17 216 115 58 19 chr5 21793335 21793387 -181292145 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 4684 104 9 0 chr5 21795302 21795966 -181289566 + L1PA8 LINE L1 5467 6136 -36 374 147 39 108 chr5 21796075 21796139 -181289393 + MER20B DNA MER1_type 475 527 -256 2754 133 26 12 chr5 21796139 21796561 -181288971 + MSTA LTR MaLR 1 428 0 374 147 39 108 chr5 21796561 21796625 -181288907 + MER20B DNA MER1_type 527 594 -189 273 208 0 0 chr5 21796724 21796777 -181288755 + MER116 DNA Mariner 1 53 -27 888 146 0 28 chr5 21797416 21797560 -181287972 + FLAM_C SINE Alu 4 143 0 450 285 87 49 chr5 21798804 21799359 -181286173 + L1MCa LINE L1 998 1573 -5034 2038 123 41 0 chr5 21799759 21800052 -181285480 - AluSq SINE Alu -8 305 1 189 184 26 0 chr5 21800264 21800302 -181285230 - MIR SINE MIR -6 256 218 * 195 225 25 0 chr5 21800268 21800308 -181285224 - L2 LINE L2 -16 3256 3216 * 203 162 27 0 chr5 21800277 21800314 -181285218 + L2 LINE L2 1242 1279 -2035 2214 114 0 0 chr5 21801300 21801606 -181283926 + AluSc SINE Alu 1 306 -3 611 334 93 25 chr5 21803041 21803517 -181282015 + L2 LINE L2 2638 3163 -150 2029 159 0 0 chr5 21803517 21803818 -181281714 - AluSx SINE Alu -11 301 1 611 334 93 25 chr5 21803818 21803958 -181281574 + L2 LINE L2 3163 3292 -21 2055 151 40 57 chr5 21804058 21804429 -181281103 + MER47A DNA MER2_type 1 365 -1 189 74 0 0 chr5 21804430 21804457 -181281075 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 380 156 0 13 chr5 21804456 21804533 -181280999 + (TA)n Simple_repeat Simple_repeat 1 76 0 276 30 0 0 chr5 21804563 21804596 -181280936 + (TG)n Simple_repeat Simple_repeat 1 33 0 208 122 0 49 chr5 21805375 21805416 -181280116 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 375 331 19 38 chr5 21806696 21806853 -181278679 - MIR SINE MIR -108 154 1 1564 178 31 14 chr5 21806899 21807192 -181278340 + AluSx SINE Alu 6 303 -9 539 116 0 21 chr5 21807192 21807287 -181278245 + (GGGGA)n Simple_repeat Simple_repeat 2 94 0 1167 120 6 0 chr5 21807313 21807471 -181278061 - AluSx SINE Alu -153 159 1 228 216 27 54 chr5 21807697 21807771 -181277761 + GA-rich Low_complexity Low_complexity 4 75 0 506 227 39 121 chr5 21807829 21808216 -181277316 - L1MC4 LINE L1 0 8042 7688 203 333 11 0 chr5 21811202 21811295 -181274237 + GA-rich Low_complexity Low_complexity 1 94 0 1744 142 35 48 chr5 21811674 21811985 -181273547 + AluJo SINE Alu 1 307 -5 498 335 107 5 chr5 21812089 21812286 -181273246 - MIR SINE MIR -2 260 44 231 343 71 52 chr5 21813285 21813495 -181272037 - MIR SINE MIR -2 260 47 735 269 165 35 chr5 21815181 21815910 -181269622 + L2 LINE L2 2483 3310 -3 669 267 0 0 chr5 21816827 21816947 -181268585 + FLAM_A SINE Alu 1 120 -13 22 43 0 21 chr5 21816953 21816984 -181268548 + AT_rich Low_complexity Low_complexity 1 32 -14 1691 152 11 11 chr5 21816984 21817253 -181268279 + AluJb SINE Alu 17 285 -27 22 43 0 21 chr5 21817253 21817268 -181268264 + AT_rich Low_complexity Low_complexity 32 46 0 216 226 0 38 chr5 21817273 21817326 -181268206 + MIR SINE MIR 212 262 0 22 35 0 0 chr5 21817549 21817578 -181267954 + AT_rich Low_complexity Low_complexity 1 29 0 450 0 0 0 chr5 21817763 21817813 -181267719 + (AATAG)n Simple_repeat Simple_repeat 1 50 0 2494 83 3 0 chr5 21817824 21818136 -181267396 + AluSp SINE Alu 1 313 0 480 286 91 42 chr5 21819495 21819848 -181265684 - MLT1E3 LTR MaLR 0 624 255 331 295 31 8 chr5 21820091 21820220 -181265312 - MLT1E3 LTR MaLR -522 132 1 866 219 77 48 chr5 21820389 21820804 -181264728 + Charlie2 DNA MER1_type 2404 2830 -32 25 31 0 0 chr5 21821096 21821128 -181264404 + AT_rich Low_complexity Low_complexity 1 32 0 336 218 127 9 chr5 21821968 21822078 -181263454 + Charlie7 DNA MER1_type 25 147 -2465 1313 180 3 113 chr5 21822147 21822474 -181263058 + AluSp SINE Alu 13 303 -10 25 0 0 0 chr5 21822763 21822788 -181262744 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr5 21823149 21823183 -181262349 + AT_rich Low_complexity Low_complexity 1 34 0 197 108 27 0 chr5 21824130 21824167 -181261365 + (TG)n Simple_repeat Simple_repeat 2 39 0 37 62 0 0 chr5 21824259 21824324 -181261208 + AT_rich Low_complexity Low_complexity 1 65 0 207 127 55 18 chr5 21824547 21824602 -181260930 + (TA)n Simple_repeat Simple_repeat 2 58 0 320 230 30 30 chr5 21824602 21824702 -181260830 + L1MC4 LINE L1 6604 6703 -1339 181 315 127 61 chr5 21824744 21825153 -181260379 + L2 LINE L2 1456 1891 -1423 2173 89 34 3 chr5 21825273 21825564 -181259968 - AluSg SINE Alu -10 300 1 2306 107 3 7 chr5 21826684 21826993 -181258539 - AluSp SINE Alu -5 308 1 859 232 61 52 chr5 21827115 21827443 -181258089 + MLT1C LTR MaLR 137 467 0 742 241 41 24 chr5 21827851 21828021 -181257511 - MER45A DNA AcHobo -1 177 5 266 213 37 19 chr5 21828535 21828643 -181256889 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 226 67 0 0 chr5 21828669 21828699 -181256833 - Alu SINE Alu -11 291 262 255 59 0 0 chr5 21828735 21828769 -181256763 - Alu SINE Alu -7 295 262 1962 129 24 7 chr5 21828804 21829099 -181256433 - AluSx SINE Alu -12 300 1 11610 166 1 22 chr5 21829168 21829378 -181256154 - L1PA14 LINE L1 -1 6160 5947 1917 153 14 7 chr5 21829378 21829672 -181255860 - AluSx SINE Alu -16 296 1 11610 166 1 22 chr5 21829672 21832312 -181253220 - L1PA14 LINE L1 -214 5947 3373 1719 170 7 14 chr5 21832416 21832705 -181252827 - AluJo SINE Alu -23 289 3 6600 128 28 16 chr5 21832723 21834200 -181251332 - L1MA3 LINE L1 0 6305 4810 388 349 31 5 chr5 21835060 21835255 -181250277 - MIR SINE MIR -6 256 57 198 71 0 0 chr5 21836064 21836092 -181249440 + (CA)n Simple_repeat Simple_repeat 2 29 0 273 29 0 0 chr5 21836612 21836646 -181248886 + (CA)n Simple_repeat Simple_repeat 2 35 0 2130 130 0 13 chr5 21838114 21838415 -181247117 - AluSx SINE Alu -15 297 1 21 0 0 0 chr5 21838473 21838494 -181247038 + AT_rich Low_complexity Low_complexity 1 21 0 1859 160 0 14 chr5 21838500 21838793 -181246739 - AluJb SINE Alu -23 289 1 2339 206 47 30 chr5 21838851 21839417 -181246115 - L1MB8 LINE L1 0 6178 5600 2214 117 0 3 chr5 21839417 21839717 -181245815 - AluSq SINE Alu -14 299 1 2339 206 47 30 chr5 21839717 21839748 -181245784 - L1MB8 LINE L1 -578 5600 5571 2323 157 100 25 chr5 21840737 21840768 -181244764 + MLT1D LTR MaLR 1 28 -477 306 0 0 0 chr5 21840768 21840802 -181244730 + (CA)n Simple_repeat Simple_repeat 1 34 0 2323 157 100 25 chr5 21840802 21841240 -181244292 + MLT1D LTR MaLR 28 505 0 2030 142 3 7 chr5 21842130 21842433 -181243099 + AluSx SINE Alu 1 302 -10 269 297 42 68 chr5 21843717 21843835 -181241697 + MER102a DNA MER1_type 213 327 -3 1005 178 91 17 chr5 21844031 21844261 -181241271 + L1M4 LINE L1 5321 5567 -607 804 183 27 27 chr5 21844332 21844518 -181241014 - MER5A DNA MER1_type -3 186 1 545 290 107 34 chr5 21844532 21844860 -181240672 - MLT1I LTR MaLR -57 352 1 242 106 21 0 chr5 21845285 21845332 -181240200 + (TCCC)n Simple_repeat Simple_repeat 4 51 0 26 0 0 0 chr5 21846290 21846316 -181239216 + AT_rich Low_complexity Low_complexity 1 26 0 441 255 57 126 chr5 21846726 21846895 -181238637 + MIR SINE MIR 33 212 -50 1939 83 0 30 chr5 21846895 21847183 -181238349 + AluSg SINE Alu 24 303 0 441 255 57 126 chr5 21847183 21847235 -181238297 + MIR SINE MIR 212 239 -23 2280 138 11 8 chr5 21847235 21847589 -181237943 + THE1A LTR MaLR 1 355 0 441 255 57 126 chr5 21847589 21847612 -181237920 + MIR SINE MIR 239 262 0 2250 117 3 3 chr5 21847950 21848258 -181237274 + AluSq SINE Alu 1 308 -5 782 192 13 13 chr5 21848540 21848691 -181236841 + LTR23 LTR ERV1 1 151 -286 741 197 42 104 chr5 21848768 21849001 -181236531 + LTR56 LTR ERV1 167 380 -57 2207 134 3 0 chr5 21849001 21849306 -181236226 - AluSx SINE Alu -6 306 1 741 197 42 104 chr5 21849306 21849361 -181236171 + LTR56 LTR ERV1 380 437 0 1279 177 5 5 chr5 21849401 21849621 -181235911 + MLT2B2 LTR ERVL 1 220 -295 477 270 23 46 chr5 21849625 21849813 -181235719 - MER93b LTR ERV1 -4 399 192 1438 201 5 19 chr5 21849948 21850307 -181235225 + MLT2B1 LTR ERVL 211 520 0 2372 127 33 28 chr5 21850329 21850691 -181234841 - THE1B LTR MaLR 0 364 1 207 211 0 0 chr5 21851346 21851384 -181234148 + GA-rich Low_complexity Low_complexity 3 40 0 196 309 15 59 chr5 21851863 21851931 -181233601 - MER5A DNA MER1_type -64 125 61 1491 183 26 15 chr5 21852324 21852597 -181232935 - AluJo SINE Alu -32 280 5 2613 120 8 19 chr5 21852693 21853061 -181232471 - THE1B LTR MaLR 0 364 1 1341 211 50 74 chr5 21853869 21854379 -181231153 - MLT1F1 LTR MaLR -71 496 1 325 285 118 68 chr5 21854663 21855003 -181230529 - MLT1K LTR MaLR -36 552 196 2077 110 7 4 chr5 21855281 21855678 -181229854 - AluSx SINE Alu 0 398 1 363 194 0 0 chr5 21856225 21856287 -181229245 + AluJ/FRAM SINE Alu 222 283 -19 327 25 0 0 chr5 21856500 21856540 -181228992 + (TG)n Simple_repeat Simple_repeat 1 40 0 223 245 0 0 chr5 21857330 21857379 -181228153 - L2 LINE L2 0 3313 3265 638 305 110 40 chr5 21857507 21857885 -181227647 - L2 LINE L2 -212 3060 2652 1769 122 108 11 chr5 21857885 21858164 -181227368 + AluSx SINE Alu 1 306 -6 638 305 110 40 chr5 21858164 21858208 -181227324 - L2 LINE L2 -620 2652 2612 2039 163 8 58 chr5 21858340 21858647 -181226885 - MLT1A1 LTR MaLR -1 364 78 2333 93 3 10 chr5 21858647 21858957 -181226575 + AluSc SINE Alu 2 309 0 2039 163 8 58 chr5 21858957 21859030 -181226502 - MLT1A1 LTR MaLR -287 78 3 254 198 71 71 chr5 21859052 21859178 -181226354 + Charlie7 DNA MER1_type 2453 2578 -34 1373 188 86 0 chr5 21859178 21859295 -181226237 + AluJo SINE Alu 5 111 -201 297 0 0 0 chr5 21859295 21859328 -181226204 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1373 188 86 0 chr5 21859328 21859466 -181226066 + AluJo SINE Alu 111 282 -30 286 283 53 0 chr5 21859570 21859683 -181225849 - L2 LINE L2 -706 2608 2490 2870 123 34 5 chr5 21860264 21860614 -181224918 + MSTA LTR MaLR 1 366 -62 2093 117 30 3 chr5 21860614 21860914 -181224618 - AluSg SINE Alu -2 308 1 2870 123 34 5 chr5 21860914 21860979 -181224553 + MSTA LTR MaLR 366 428 0 485 88 0 15 chr5 21861816 21861884 -181223648 + 7SK RNA RNA 127 193 0 2194 101 3 10 chr5 21862040 21862338 -181223194 - AluSp SINE Alu -17 296 1 2230 125 3 0 chr5 21862364 21862667 -181222865 + AluSx SINE Alu 1 304 -8 1969 191 58 25 chr5 21863124 21863573 -181221959 - MLT1D LTR MaLR -41 464 1 260 49 0 73 chr5 21863593 21863634 -181221898 + LTR67 LTR ERVL 102 139 -418 * 756 162 111 79 chr5 21863625 21863711 -181221821 + MER96B DNA MER1_type? 9 91 -326 2145 135 0 0 chr5 21863711 21864008 -181221524 - AluSx SINE Alu -15 297 1 756 162 111 79 chr5 21864008 21864137 -181221395 + MER96B DNA MER1_type? 91 231 -186 345 331 52 7 chr5 21864378 21864532 -181221000 + LTR67 LTR ERVL 394 554 -3 2265 100 3 13 chr5 21864676 21864986 -181220546 + AluSx SINE Alu 5 311 -1 575 148 0 9 chr5 21866299 21866407 -181219125 + (TTCC)n Simple_repeat Simple_repeat 4 110 0 228 89 0 54 chr5 21866452 21866508 -181219024 + (TTTC)n Simple_repeat Simple_repeat 1 53 0 1286 191 12 8 chr5 21866531 21866783 -181218749 - AluJb SINE Alu -1 311 59 234 211 66 26 chr5 21866951 21867027 -181218505 - LTR33A LTR ERVL -6 517 439 820 136 0 0 chr5 21867584 21867702 -181217830 + FLAM_C SINE Alu 1 118 -25 27 0 0 0 chr5 21867702 21867729 -181217803 + AT_rich Low_complexity Low_complexity 1 27 0 636 330 82 28 chr5 21867749 21868215 -181217317 - L2 LINE L2 -12 3301 2811 1811 150 0 0 chr5 21868950 21869072 -181216460 + AluJb SINE Alu 1 122 -190 298 0 48 0 chr5 21869072 21869114 -181216418 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1811 150 0 0 chr5 21869114 21869271 -181216261 + AluJb SINE Alu 121 280 -32 230 196 22 0 chr5 21870884 21870930 -181214602 + L2 LINE L2 3214 3260 -12 2195 109 0 0 chr5 21871029 21871342 -181214190 - AluSq SINE Alu 0 313 1 332 236 136 26 chr5 21871471 21871662 -181213870 - L1MC5 LINE L1 -210 7751 7540 2556 122 25 0 chr5 21871732 21872085 -181213447 + THE1B LTR MaLR 3 364 0 225 130 43 22 chr5 21872218 21872264 -181213268 - THE1B LTR MaLR 0 355 309 * 953 116 102 0 chr5 21872245 21872392 -181213140 - THE1B LTR MaLR -202 162 1 209 160 0 40 chr5 21872393 21872443 -181213089 + (CATA)n Simple_repeat Simple_repeat 4 51 0 1354 155 28 1 chr5 21872464 21872745 -181212787 - MLT2C2 LTR ERVL -67 330 1 2153 120 6 19 chr5 21873035 21873351 -181212181 + AluSx SINE Alu 1 312 0 4927 121 10 0 chr5 21873469 21874156 -181211376 - L1PA15 LINE L1 -4 6161 5468 1740 210 9 9 chr5 21874467 21874810 -181210722 + MLT2C1 LTR ERVL 3 345 -52 216 184 0 0 chr5 21874815 21874853 -181210679 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 256 152 22 0 chr5 21874865 21874911 -181210621 + MLT2C1 LTR ERVL 350 396 -1 276 211 0 13 chr5 21875277 21875353 -181210179 + (TA)n Simple_repeat Simple_repeat 1 75 0 3073 161 59 51 chr5 21876958 21877565 -181207967 - LTR9 LTR ERV1 0 612 1 1723 113 0 0 chr5 21877926 21878156 -181207376 - AluSx SINE Alu -17 295 66 1031 176 111 111 chr5 21878156 21878598 -181206934 - LTR7 LTR ERV1 -7 443 2 560 115 0 13 chr5 21878598 21878676 -181206856 - AluSx SINE Alu -235 78 2 1090 208 253 5 chr5 21879029 21879404 -181206128 + MER110 LTR ERV1 10 477 -14 1653 172 3 27 chr5 21879661 21879958 -181205574 + AluJo SINE Alu 1 290 -22 2114 118 0 26 chr5 21879958 21880262 -181205270 - AluSx SINE Alu -16 296 1 35 0 0 0 chr5 21880268 21880303 -181205229 + AT_rich Low_complexity Low_complexity 1 35 0 485 300 70 30 chr5 21880737 21880845 -181204687 - L1ME4a LINE L1 -279 5842 5740 195 42 0 0 chr5 21880845 21880869 -181204663 + (TA)n Simple_repeat Simple_repeat 2 25 0 485 300 70 30 chr5 21880869 21881030 -181204502 - L1ME4a LINE L1 -381 5740 5562 610 286 119 69 chr5 21881890 21882503 -181203029 - L2 LINE L2 -15 3298 2633 2251 96 3 0 chr5 21882503 21882796 -181202736 + AluSx SINE Alu 8 301 -11 610 286 119 69 chr5 21882796 21882903 -181202629 - L2 LINE L2 -680 2633 2533 1903 226 79 92 chr5 21882906 21882968 -181202564 - MER21B LTR ERV1 -75 788 727 180 0 0 0 chr5 21882968 21882988 -181202544 + (CAATT)n Simple_repeat Simple_repeat 2 21 0 1903 226 79 92 chr5 21882988 21883722 -181201810 - MER21B LTR ERV1 -136 727 2 2112 113 10 0 chr5 21884839 21885130 -181200402 - AluSx SINE Alu -18 294 1 234 224 37 84 chr5 21885452 21885559 -181199973 + Charlie7 DNA MER1_type 3 104 -2508 256 253 105 11 chr5 21885742 21885837 -181199695 - MER5A DNA MER1_type -43 146 43 2122 127 3 3 chr5 21885846 21886153 -181199379 - AluSx SINE Alu -5 307 1 1863 160 0 29 chr5 21886153 21886459 -181199073 - AluJo SINE Alu -15 297 1 669 322 34 39 chr5 21886969 21887326 -181198206 + Charlie2 DNA MER1_type 10 364 -2498 857 183 70 111 chr5 21887329 21887432 -181198100 + Charlie2 DNA MER1_type 2231 2337 -525 2208 110 3 16 chr5 21887432 21887742 -181197790 - AluSx SINE Alu -6 306 1 857 183 70 111 chr5 21887742 21888023 -181197509 + Charlie2 DNA MER1_type 2337 2597 -265 1645 168 56 11 chr5 21888023 21888309 -181197223 - AluJo SINE Alu -13 299 1 857 183 70 111 chr5 21888309 21888365 -181197167 + Charlie2 DNA MER1_type 2597 2654 -208 7544 20 13 0 chr5 21888408 21889274 -181196258 - L1PA4 LINE L1 -1 6154 5278 497 131 0 65 chr5 21889274 21889381 -181196151 + Charlie2 DNA MER1_type 2694 2793 -69 184 315 9 18 chr5 21889562 21889673 -181195859 - L2 LINE L2 -1641 1673 1564 233 163 20 0 chr5 21891332 21891381 -181194151 + CT-rich Low_complexity Low_complexity 6 55 0 7258 60 42 3 chr5 21891862 21892944 -181192588 - L1PA7 LINE L1 0 6154 5062 1986 125 4 4 chr5 21892944 21893225 -181192307 - AluSx SINE Alu -31 281 1 7258 60 42 3 chr5 21893225 21893263 -181192269 - L1PA7 LINE L1 -1092 5062 5027 2120 125 0 3 chr5 21893594 21893889 -181191643 - AluSx SINE Alu -18 294 1 564 272 10 41 chr5 21893904 21894099 -181191433 + L2 LINE L2 3116 3304 -9 284 300 50 10 chr5 21897166 21897266 -181188266 - MIR3 SINE MIR -24 184 81 2012 130 0 7 chr5 21897522 21897806 -181187726 + AluSx SINE Alu 1 282 -30 1913 244 58 50 chr5 21897984 21898570 -181186962 + MLT1E LTR MaLR 1 591 -2 284 308 144 0 chr5 21898937 21899083 -181186449 - MIR SINE MIR -77 185 19 2228 116 3 0 chr5 21899112 21899406 -181186126 + AluSx SINE Alu 1 295 -17 249 139 0 0 chr5 21900157 21900200 -181185332 + (CCAA)n Simple_repeat Simple_repeat 2 44 0 458 274 186 51 chr5 21900681 21901053 -181184479 + L2 LINE L2 1138 1559 -1755 1675 283 82 13 chr5 21901077 21901625 -181183907 + MLT1E LTR MaLR 4 589 -4 1261 175 62 19 chr5 21901713 21902022 -181183510 - MER33 DNA MER1_type -2 322 1 2155 103 3 13 chr5 21902040 21902340 -181183192 + AluSq SINE Alu 1 297 -16 1997 141 10 0 chr5 21902377 21902683 -181182849 - AluSx SINE Alu 0 312 4 875 141 0 8 chr5 21902723 21902851 -181182681 + FLAM_C SINE Alu 2 128 -5 393 117 0 0 chr5 21902851 21902911 -181182621 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 2080 131 3 0 chr5 21904142 21904432 -181181100 - AluSq SINE Alu -22 291 1 22 0 0 0 chr5 21904432 21904454 -181181078 + AT_rich Low_complexity Low_complexity 1 22 0 1927 153 0 3 chr5 21904454 21904742 -181180790 - AluSx SINE Alu -25 287 1 345 232 56 136 chr5 21904989 21905239 -181180293 + MLT1J LTR MaLR 226 455 -56 2124 136 7 0 chr5 21905374 21905682 -181179850 - AluSx SINE Alu -2 310 1 2404 78 0 3 chr5 21906276 21906570 -181178962 - AluY SINE Alu -18 293 1 234 316 0 0 chr5 21908558 21908634 -181176898 - Charlie2a DNA MER1_type -1125 1737 1662 235 308 58 25 chr5 21910642 21910762 -181174770 - MLT1E3 LTR MaLR -346 278 155 3686 207 32 32 chr5 21911283 21912668 -181172864 - L1MA8 LINE L1 -178 6113 4723 413 303 20 13 chr5 21912692 21912844 -181172688 - L1MCa LINE L1 -6268 158 6 28 29 0 0 chr5 21913021 21913056 -181172476 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr5 21913323 21913346 -181172186 + AT_rich Low_complexity Low_complexity 1 23 0 1039 244 70 15 chr5 21913713 21913984 -181171548 - AluJb SINE Alu -16 286 1 208 146 0 55 chr5 21914959 21915014 -181170518 + (CACAA)n Simple_repeat Simple_repeat 4 55 0 845 108 0 0 chr5 21915187 21915298 -181170234 - AluSq/x SINE Alu -202 111 1 1695 175 0 10 chr5 21915521 21915838 -181169694 + AluSx SINE Alu 3 316 0 239 247 65 11 chr5 21916043 21916136 -181169396 + MLT1E3 LTR MaLR 12 109 -545 556 277 118 45 chr5 21916192 21916614 -181168918 + MLT1E3 LTR MaLR 172 624 0 272 306 19 102 chr5 21919712 21919918 -181165614 - MLT1L LTR MaLR -204 411 223 348 305 46 15 chr5 21923044 21923175 -181162357 + MIR3 SINE MIR 33 167 -41 1832 132 189 11 chr5 21924372 21924743 -181160789 - LTR23 LTR ERV1 0 437 1 327 231 0 0 chr5 21925414 21925548 -181159984 + (TG)n Simple_repeat Simple_repeat 2 135 0 240 138 73 0 chr5 21925884 21925993 -181159539 + (TTATA)n Simple_repeat Simple_repeat 4 120 0 180 152 0 0 chr5 21926201 21926234 -181159298 + T-rich Low_complexity Low_complexity 3 35 0 2251 166 54 29 chr5 21928022 21928468 -181157064 - MLT1C LTR MaLR -10 457 1 2093 108 31 0 chr5 21928649 21928936 -181156596 + AluSg SINE Alu 1 296 -14 2826 125 31 7 chr5 21928970 21929387 -181156145 + MSTA LTR MaLR 1 427 -1 272 212 0 45 chr5 21929676 21929742 -181155790 + MLT1K LTR MaLR 49 111 -456 2633 209 22 24 chr5 21929742 21930027 -181155505 + L1MD3 LINE L1 7403 7687 -308 1943 136 0 52 chr5 21930027 21930337 -181155195 + AluSx SINE Alu 1 294 -18 2633 209 22 24 chr5 21930337 21930645 -181154887 + L1MD3 LINE L1 7687 7995 0 997 229 9 9 chr5 21931504 21931722 -181153810 - MLT2B1 LTR ERVL -300 220 3 559 276 114 14 chr5 21931726 21931936 -181153596 + MLT1K LTR MaLR 75 305 -244 1745 194 7 3 chr5 21932230 21932540 -181152992 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr5 21932737 21932758 -181152774 + AT_rich Low_complexity Low_complexity 1 21 0 1774 144 81 11 chr5 21933806 21934090 -181151442 - AluJb SINE Alu -8 304 1 237 352 74 0 chr5 21934159 21934267 -181151265 - L2 LINE L2 -6 3307 3192 593 271 107 20 chr5 21934892 21935136 -181150396 + MLT1K LTR MaLR 322 586 -2 380 237 59 41 chr5 21935291 21935460 -181150072 + HAL1b LINE L1 663 834 -514 2066 70 0 79 chr5 21935616 21935650 -181149882 - AluY SINE Alu -1 310 275 2208 65 0 81 chr5 21935650 21935972 -181149560 - AluY SINE Alu 0 311 16 2066 70 0 79 chr5 21935972 21936252 -181149280 - AluY SINE Alu -36 275 21 2326 45 0 21 chr5 21936253 21936541 -181148991 - AluY SINE Alu -29 282 1 1002 229 69 28 chr5 22136714 22137076 -180948456 + L1MC3 LINE L1 4619 4995 -1151 1377 228 3 13 chr5 22137096 22137399 -180948133 + AluJo SINE Alu 12 311 -1 2672 219 101 32 chr5 22137403 22138572 -180946960 + L1MC3 LINE L1 5000 5395 -751 258 301 7 21 chr5 22138609 22138752 -180946780 + L1M4 LINE L1 4559 4699 -1447 830 250 88 45 chr5 22138823 22139298 -180946234 + L1M4 LINE L1 2938 3448 -2698 2197 103 6 13 chr5 22139298 22139610 -180945922 + AluSg SINE Alu 1 310 0 830 250 88 45 chr5 22139610 22139773 -180945759 + L1M4 LINE L1 3448 3603 -2543 2254 95 89 11 chr5 22140054 22140402 -180945130 + THE1C LTR MaLR 1 375 0 21 57 0 0 chr5 22140465 22140500 -180945032 + AT_rich Low_complexity Low_complexity 1 35 0 31 92 0 0 chr5 22141585 22141672 -180943860 + AT_rich Low_complexity Low_complexity 1 87 0 1224 217 38 28 chr5 22143088 22143406 -180942126 + L1MB4 LINE L1 5860 6180 0 1557 209 67 35 chr5 22143407 22143987 -180941545 + L1MC5 LINE L1 7326 7924 -37 918 237 23 47 chr5 22144228 22144528 -180941004 - L1ME LINE L1 -420 5746 5454 1908 144 3 3 chr5 22144643 22144935 -180940597 - AluSx SINE Alu -20 292 1 183 129 0 0 chr5 22144991 22145022 -180940510 + (TG)n Simple_repeat Simple_repeat 2 32 0 246 135 0 0 chr5 22145024 22145061 -180940471 + MLT2D LTR ERVL 378 414 0 2719 22 0 0 chr5 22145116 22145427 -180940105 + AluY SINE Alu 1 311 0 1732 128 99 0 chr5 22145896 22146169 -180939363 - AluSx SINE Alu -7 305 6 372 309 21 0 chr5 22146225 22146322 -180939210 - MLT1G1 LTR MaLR -421 174 76 26 0 0 0 chr5 22147718 22147744 -180937788 + AT_rich Low_complexity Low_complexity 1 26 0 35 24 0 0 chr5 22148345 22148387 -180937145 + AT_rich Low_complexity Low_complexity 1 42 0 205 149 43 0 chr5 22148708 22148755 -180936777 + (TA)n Simple_repeat Simple_repeat 1 49 0 1876 128 4 0 chr5 22148809 22149075 -180936457 + AluSg SINE Alu 37 303 -7 49 43 0 0 chr5 22150238 22150308 -180935224 + AT_rich Low_complexity Low_complexity 1 70 0 850 118 15 0 chr5 22151564 22151700 -180933832 - L1PA14 LINE L1 -3 6158 6021 11371 192 39 7 chr5 22151701 22155524 -180930008 - L1PA12 LINE L1 -1938 5646 1697 287 299 68 20 chr5 22155805 22155952 -180929580 + L1MEc LINE L1 1628 1781 -4615 264 305 66 12 chr5 22156028 22156195 -180929337 + L1MEc LINE L1 1907 2082 -4314 1644 191 3 0 chr5 22156283 22156565 -180928967 - AluJo SINE Alu -23 289 7 22 0 0 0 chr5 22156584 22156606 -180928926 + AT_rich Low_complexity Low_complexity 1 22 0 321 269 122 21 chr5 22156897 22157097 -180928435 + L1MEc LINE L1 2474 2711 -3504 3099 135 22 8 chr5 22157097 22157587 -180927945 - LOR1a LTR ERV1 0 497 1 321 269 122 21 chr5 22157587 22157665 -180927867 + L1MEc LINE L1 2711 2780 -3435 2101 97 7 30 chr5 22157733 22158032 -180927500 - AluSg SINE Alu -18 292 1 21 36 0 0 chr5 22158743 22158771 -180926761 + AT_rich Low_complexity Low_complexity 1 28 0 396 184 10 19 chr5 22158834 22158937 -180926595 + L1MA4 LINE L1 6197 6298 -2 24 32 0 0 chr5 22159121 22159152 -180926380 + AT_rich Low_complexity Low_complexity 1 31 0 1582 203 101 0 chr5 22160120 22160436 -180925096 - MER7A DNA MER2_type 0 346 1 21 0 0 0 chr5 22160779 22160800 -180924732 + AT_rich Low_complexity Low_complexity 1 21 0 1444 188 3 39 chr5 22160810 22161118 -180924414 + AluJb SINE Alu 3 299 -13 200 143 29 0 chr5 22161688 22161723 -180923809 + (TA)n Simple_repeat Simple_repeat 1 36 0 10079 196 74 24 chr5 22161777 22162684 -180922848 + L1MCa LINE L1 16 877 -5730 419 122 61 0 chr5 22162684 22162766 -180922766 - L1PA13 LINE L1 -1 6162 6076 10079 196 74 24 chr5 22162766 22164374 -180921158 + L1MCa LINE L1 877 2693 -3914 242 129 24 5 chr5 22164474 22164526 -180921006 - THE1A LTR MaLR -259 96 45 1155 250 11 39 chr5 22164567 22164927 -180920605 + L1M4 LINE L1 4516 4865 -1281 245 203 51 0 chr5 22164938 22164997 -180920535 - MSTB1 LTR MaLR -13 419 358 1916 154 36 36 chr5 22164997 22165361 -180920171 - THE1B LTR MaLR 0 364 1 340 333 0 9 chr5 22165473 22165587 -180919945 - L1ME LINE L1 -5059 1325 1213 386 288 79 43 chr5 22165596 22166130 -180919402 - L1ME LINE L1 -5075 1297 745 230 166 95 136 chr5 22166332 22166501 -180919031 - L1ME LINE L1 -5859 513 352 2166 93 10 0 chr5 22166548 22166839 -180918693 + AluSq SINE Alu 1 294 -19 1009 181 12 81 chr5 22167349 22167608 -180917924 - MER65C LTR ERV1 0 461 221 270 191 91 55 chr5 22167700 22167810 -180917722 - MER51D LTR ERV1 -43 614 501 2009 116 4 0 chr5 22168003 22168302 -180917230 - AluSc SINE Alu 0 302 3 1085 215 14 5 chr5 22168590 22168813 -180916719 - MER65C LTR ERV1 -236 225 1 207 214 0 0 chr5 22170197 22170239 -180915293 + A-rich Low_complexity Low_complexity 2 43 0 24 32 0 0 chr5 22172210 22172241 -180913291 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr5 22172346 22172381 -180913151 + AT_rich Low_complexity Low_complexity 1 35 0 792 277 81 39 chr5 22173778 22173952 -180911580 - MLT1D LTR MaLR -2 503 338 2167 80 6 68 chr5 22173952 22174277 -180911255 + AluSq SINE Alu 1 305 -8 792 277 81 39 chr5 22174277 22174585 -180910947 - MLT1D LTR MaLR -167 338 1 1300 232 33 129 chr5 22174608 22175129 -180910403 - MLT1D-int LTR MaLR -24 1347 877 2053 244 28 62 chr5 22175208 22175996 -180909536 - MLT1D-int LTR MaLR -488 883 5 793 261 82 76 chr5 22176000 22176341 -180909191 - MLT1D LTR MaLR 0 505 125 215 355 55 18 chr5 22177364 22177474 -180908058 + MIR SINE MIR 1 114 -148 357 336 28 49 chr5 22177609 22177933 -180907599 + MLT1I LTR MaLR 76 392 -17 260 229 124 9 chr5 22177942 22178047 -180907485 + MIR SINE MIR 146 262 0 1783 107 8 4 chr5 22178133 22178385 -180907147 + AluSc SINE Alu 1 253 -56 29 28 0 0 chr5 22180240 22180276 -180905256 + AT_rich Low_complexity Low_complexity 1 36 0 302 323 99 25 chr5 22180495 22180696 -180904836 - L1MC/D LINE L1 -2004 5804 5589 1947 136 45 0 chr5 22181050 22181337 -180904195 - AluSx SINE Alu -10 302 3 296 238 25 84 chr5 22181514 22181658 -180903874 + LTR41 LTR ERVL 73 226 -569 320 244 10 8 chr5 22183611 22183709 -180901823 + MLT1I LTR MaLR 71 143 -266 226 339 99 33 chr5 22183901 22184022 -180901510 + LTR67 LTR ERVL 131 259 -298 2844 205 37 18 chr5 22184210 22184835 -180900697 - LTR9B LTR ERV1 -1 643 7 246 288 81 36 chr5 22185805 22185916 -180899616 + L1ME LINE L1 121 236 -5834 431 327 23 8 chr5 22186171 22186434 -180899098 + L1M4 LINE L1 3211 3477 -2669 211 247 14 27 chr5 22186464 22186537 -180898995 + (TATATG)n Simple_repeat Simple_repeat 2 73 0 1455 282 76 64 chr5 22186610 22187836 -180897696 + L1M4 LINE L1 3787 5043 -1103 514 162 15 167 chr5 22187957 22188155 -180897377 + L1MA8 LINE L1 5876 6043 -257 3076 171 139 5 chr5 22188669 22189295 -180896237 - Tigger1 DNA MER2_type -1 2417 1708 264 236 42 7 chr5 22189315 22189459 -180896073 + (TA)n Simple_repeat Simple_repeat 1 149 0 288 77 0 0 chr5 22189490 22189529 -180896003 + (TA)n Simple_repeat Simple_repeat 2 40 0 2388 98 37 13 chr5 22189529 22189906 -180895626 - MLT2A1 LTR ERVL -58 386 1 7905 217 40 24 chr5 22189906 22190070 -180895462 - Tigger1 DNA MER2_type -707 1711 1551 2415 114 22 3 chr5 22190070 22190438 -180895094 - THE1C LTR MaLR 0 375 1 7905 217 40 24 chr5 22190438 22191942 -180893590 - Tigger1 DNA MER2_type -867 1551 17 191 257 14 0 chr5 22192426 22192500 -180893032 + (TATG)n Simple_repeat Simple_repeat 2 76 0 798 158 0 0 chr5 22192556 22192689 -180892843 - FLAM_C SINE Alu 0 133 1 305 210 119 74 chr5 22192789 22192965 -180892567 + MER112 DNA MER1_type 65 248 -12 359 331 44 11 chr5 22193322 22193503 -180892029 - MIR SINE MIR -70 192 6 1199 198 0 117 chr5 22193549 22193745 -180891787 - AluJo SINE Alu -12 300 157 1587 72 5 0 chr5 22193745 22193940 -180891592 - AluSp SINE Alu -117 196 1 1199 198 0 117 chr5 22193940 22194076 -180891456 - AluJo SINE Alu -155 157 7 228 298 0 36 chr5 22194400 22194484 -180891048 + L3 LINE CR1 1381 1461 -116 315 179 18 0 chr5 22194536 22194592 -180890940 + L2 LINE L2 3257 3313 0 186 321 137 61 chr5 22194625 22194887 -180890645 - L3b LINE CR1 -13 1570 1289 897 228 38 0 chr5 22194961 22195145 -180890387 + MER58A DNA MER1_type 3 193 -31 22 0 0 0 chr5 22195146 22195168 -180890364 + AT_rich Low_complexity Low_complexity 1 22 0 7134 87 31 5 chr5 22195168 22197002 -180888530 - L1PA8 LINE L1 -13 6159 4297 10040 119 10 0 chr5 22197002 22198559 -180886973 + L1PA8 LINE L1 2711 4283 -1863 11568 218 27 41 chr5 22198609 22203492 -180882040 + L1PA16 LINE L1 1 4648 -2221 1918 169 36 14 chr5 22203492 22203848 -180881684 + THE1B LTR MaLR 1 364 0 11568 218 27 41 chr5 22203848 22206040 -180879492 + L1PA16 LINE L1 4648 6869 0 447 247 79 44 chr5 22206611 22206960 -180878572 - LTR15 LTR ERV1 0 595 141 24 77 0 0 chr5 22207049 22207101 -180878431 + AT_rich Low_complexity Low_complexity 1 52 0 488 147 0 0 chr5 22207732 22207807 -180877725 + L1PA16 LINE L1 6044 6118 -48 420 268 91 16 chr5 22207930 22208173 -180877359 + L1ME2 LINE L1 4476 4736 -1410 2391 73 0 3 chr5 22208173 22208474 -180877058 - AluY SINE Alu -7 304 5 341 174 81 12 chr5 22208498 22208659 -180876873 + (TA)n Simple_repeat Simple_repeat 1 172 0 316 153 58 36 chr5 22208680 22208817 -180876715 + (TA)n Simple_repeat Simple_repeat 1 140 0 308 261 27 69 chr5 22208827 22209087 -180876445 + L1ME2 LINE L1 4812 5060 -1086 200 200 25 0 chr5 22209181 22209221 -180876311 + (TG)n Simple_repeat Simple_repeat 2 42 0 1368 252 58 78 chr5 22209370 22210040 -180875492 + L1ME2 LINE L1 5360 6016 -148 2303 62 7 7 chr5 22210642 22210951 -180874581 - AluY SINE Alu -2 309 1 330 349 17 8 chr5 22213077 22213269 -180872263 + L1MC/D LINE L1 5462 5659 -510 552 324 74 71 chr5 22213662 22214271 -180871261 + L1ME3 LINE L1 5302 5915 -247 839 309 75 24 chr5 22214468 22214801 -180870731 - MLT1I LTR MaLR 0 409 60 35 63 0 0 chr5 22215411 22215474 -180870058 + AT_rich Low_complexity Low_complexity 1 63 0 206 190 25 38 chr5 22215514 22215593 -180869939 + T-rich Low_complexity Low_complexity 5 82 0 348 222 0 68 chr5 22216928 22217045 -180868487 - MER34C LTR ERV1 -3 582 474 292 177 104 73 chr5 22217332 22217428 -180868104 - MER34B LTR ERV1 -444 121 23 29 28 0 0 chr5 22217867 22217903 -180867629 + AT_rich Low_complexity Low_complexity 1 36 0 202 24 24 73 chr5 22217975 22218016 -180867516 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 186 103 0 0 chr5 22218462 22218491 -180867041 + (CAT)n Simple_repeat Simple_repeat 2 30 0 26 0 0 0 chr5 22220456 22220482 -180865050 + AT_rich Low_complexity Low_complexity 1 26 0 261 211 0 0 chr5 22220580 22220637 -180864895 + (CA)n Simple_repeat Simple_repeat 2 58 0 271 331 32 16 chr5 22221627 22221751 -180863781 + LTR33A LTR ERVL 61 186 -337 413 297 273 8 chr5 22221940 22222321 -180863211 + L2 LINE L2 1752 2233 -1081 324 267 85 120 chr5 22222330 22222906 -180862626 - MLT1F1 LTR MaLR -25 542 3 1066 323 141 22 chr5 22222929 22223731 -180861801 + L2 LINE L2 2258 3183 -130 2887 193 29 8 chr5 22223731 22224321 -180861211 + MER6A DNA MER2_type 4 605 0 1066 323 141 22 chr5 22224321 22224470 -180861062 + L2 LINE L2 3183 3313 0 311 260 30 0 chr5 22224518 22224618 -180860914 + (TG)n Simple_repeat Simple_repeat 2 104 0 2082 190 0 35 chr5 22224857 22224999 -180860533 - MER66B LTR ERV1 -88 398 253 2120 96 10 0 chr5 22224999 22225290 -180860242 - AluSx SINE Alu -18 294 1 2082 190 0 35 chr5 22225290 22225553 -180859979 - MER66B LTR ERV1 -233 253 7 362 390 139 12 chr5 22226227 22226802 -180858730 - L2 LINE L2 -857 2457 1810 1436 209 7 40 chr5 22227038 22227340 -180858192 - AluJb SINE Alu -10 292 1 23 0 0 0 chr5 22227473 22227496 -180858036 + AT_rich Low_complexity Low_complexity 1 23 0 874 191 46 8 chr5 22228243 22228462 -180857070 + MER61D LTR ERV1 340 501 0 23 33 0 0 chr5 22228845 22228875 -180856657 + AT_rich Low_complexity Low_complexity 1 30 0 1418 176 108 3 chr5 22228997 22229321 -180856211 - L1MC1 LINE L1 -197 6136 5779 23 68 0 0 chr5 22229358 22229402 -180856130 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr5 22229662 22229691 -180855841 + AT_rich Low_complexity Low_complexity 1 29 0 236 30 30 0 chr5 22230203 22230236 -180855296 + (TA)n Simple_repeat Simple_repeat 2 35 0 696 355 83 23 chr5 22230828 22231092 -180854440 + L1M3c LINE L1 1364 1611 -5885 2209 137 28 19 chr5 22231092 22231451 -180854081 + THE1B LTR MaLR 3 364 0 696 355 83 23 chr5 22231451 22231665 -180853867 + L1M3c LINE L1 1611 1871 -5625 2501 271 78 26 chr5 22231769 22232936 -180852596 + L1M3c LINE L1 2017 3100 -4465 2409 65 3 0 chr5 22232936 22233230 -180852302 + AluY SINE Alu 1 295 -16 2501 271 78 26 chr5 22233230 22233573 -180851959 + L1M3c LINE L1 3100 3424 -4141 29 0 0 0 chr5 22233847 22233876 -180851656 + AT_rich Low_complexity Low_complexity 1 29 0 2375 69 0 10 chr5 22234997 22235302 -180850230 + AluY SINE Alu 1 302 -9 200 229 0 21 chr5 22236533 22236581 -180848951 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 436 315 14 7 chr5 22238130 22238276 -180847256 + MIR SINE MIR 48 194 -68 1688 232 25 0 chr5 22238649 22239003 -180846529 + MLT1A1 LTR MaLR 1 363 -2 324 345 80 20 chr5 22239030 22239230 -180846302 + L1MEd LINE L1 71 282 -5837 23 0 0 0 chr5 22239525 22239548 -180845984 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr5 22239707 22239736 -180845796 + AT_rich Low_complexity Low_complexity 1 29 0 806 251 83 74 chr5 22239888 22240322 -180845210 + L1MCa LINE L1 43 406 -5639 * 2061 249 56 50 chr5 22240319 22241450 -180844082 + L1M3c LINE L1 4174 5311 -2254 2031 189 31 14 chr5 22241451 22241869 -180843663 - LOR1b LTR ERV1 0 461 37 2476 176 7 0 chr5 22242056 22242459 -180843073 - L1PA12 LINE L1 -5867 1714 1309 1573 157 61 66 chr5 22242459 22242836 -180842696 + THE1C LTR MaLR 1 375 0 7396 206 75 5 chr5 22242838 22244374 -180841158 + THE1C-int LTR MaLR 3 1646 -5 1727 168 75 9 chr5 22244381 22244726 -180840806 + THE1C LTR MaLR 5 372 -3 3041 209 4 0 chr5 22244729 22245235 -180840297 - L1PA12 LINE L1 -6274 1307 800 30 77 0 0 chr5 22245510 22245575 -180839957 + AT_rich Low_complexity Low_complexity 1 65 0 213 39 0 0 chr5 22245599 22245625 -180839907 + (TG)n Simple_repeat Simple_repeat 1 26 0 232 91 0 0 chr5 22246244 22246277 -180839255 - L1MEc LINE L1 -916 5299 5267 2350 200 4 0 chr5 22246283 22246753 -180838779 + L1P LINE L1 4035 4506 -1640 887 278 89 25 chr5 22246757 22247365 -180838167 - L1MEc LINE L1 -967 5248 4602 1231 241 20 7 chr5 22247442 22247741 -180837791 - MER58B DNA MER1_type -2 339 37 504 271 65 48 chr5 22247749 22248041 -180837491 - L1MEc LINE L1 -1827 4388 4092 1377 250 76 45 chr5 22248053 22248858 -180836674 - L1MEc LINE L1 -3185 3030 2201 3687 134 35 58 chr5 22248859 22249584 -180835948 - LTR1 LTR ERV1 0 785 78 1675 92 35 0 chr5 22249585 22249812 -180835720 - LTR12 LTR ERV1 0 714 480 277 319 9 0 chr5 22249813 22249929 -180835603 - LTR30 LTR ERV1 -80 642 526 1159 64 0 0 chr5 22249929 22250070 -180835462 - LTR12 LTR ERV1 -455 259 119 257 250 0 0 chr5 22250070 22250122 -180835410 - LTR30 LTR ERV1 -670 52 1 * 303 231 46 0 chr5 22250122 22250171 -180835361 - LTR1 LTR ERV1 -702 83 32 1806 168 3 7 chr5 22250380 22250684 -180834848 - AluSg SINE Alu -6 304 2 529 279 48 86 chr5 22250688 22251130 -180834402 - L1MEc LINE L1 -4320 2076 1670 7484 28 3 1 chr5 22251130 22252206 -180833326 + L1PA4 LINE L1 5078 6155 0 529 279 48 86 chr5 22252206 22252473 -180833059 - L1MEc LINE L1 -4726 1670 1394 26 0 0 0 chr5 22253058 22253084 -180832448 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr5 22253120 22253142 -180832390 + AT_rich Low_complexity Low_complexity 1 22 0 888 299 25 25 chr5 22254157 22254478 -180831054 - LTR16A LTR ERVL -102 348 28 2173 106 3 3 chr5 22254785 22255077 -180830455 + AluSx SINE Alu 3 294 -18 241 250 37 56 chr5 22255655 22255755 -180829777 - MLT1H1 LTR MaLR -2 553 456 1466 237 85 38 chr5 22255755 22256177 -180829355 + MLT2B1 LTR ERVL 1 442 -78 198 143 0 0 chr5 22256180 22256215 -180829317 + (T)n Simple_repeat Simple_repeat 1 35 0 1804 203 39 6 chr5 22256316 22256680 -180828852 + MSTA LTR MaLR 53 428 0 350 322 61 23 chr5 22256828 22257189 -180828343 + L1ME3 LINE L1 5767 6141 -23 547 241 6 13 chr5 22257598 22257756 -180827776 - LTR38B LTR ERV1 -18 592 436 794 219 12 0 chr5 22257762 22257926 -180827606 + FRAM SINE Alu 1 166 -10 400 274 100 47 chr5 22257944 22258291 -180827241 - LTR38B LTR ERV1 -191 381 1 1851 117 51 11 chr5 22259013 22259286 -180826246 - AluSx SINE Alu -28 284 1 1991 234 37 14 chr5 22259726 22260157 -180825375 + MER21B LTR ERV1 94 534 -329 387 259 105 6 chr5 22260157 22260319 -180825213 + L1M4 LINE L1 5654 5831 -331 2135 263 40 34 chr5 22260382 22260491 -180825041 - MER44D DNA MER2_type -1882 605 498 3594 172 59 17 chr5 22260491 22260827 -180824705 + MER72 LTR ERV1 1 321 -401 2293 103 0 0 chr5 22260827 22261128 -180824404 - AluSc SINE Alu -8 301 1 3594 172 59 17 chr5 22261128 22261484 -180824048 + MER72 LTR ERV1 321 722 0 2135 263 40 34 chr5 22261484 22262103 -180823429 - MER44D DNA MER2_type -1989 498 1 539 308 33 17 chr5 22262103 22262343 -180823189 + L1ME1 LINE L1 5919 6162 -4 885 217 21 5 chr5 22262929 22263118 -180822414 - MLT1B LTR MaLR -8 382 191 289 89 0 36 chr5 22263189 22263245 -180822287 + (TTC)n Simple_repeat Simple_repeat 1 54 0 2398 67 0 3 chr5 22263260 22263560 -180821972 + AluY SINE Alu 1 299 -12 1228 223 22 4 chr5 22263560 22263829 -180821703 - AluJo SINE Alu -36 276 3 567 276 0 7 chr5 22263873 22264025 -180821507 - MLT1B LTR MaLR -238 152 2 27 49 0 0 chr5 22265005 22265046 -180820486 + AT_rich Low_complexity Low_complexity 1 41 0 234 231 0 0 chr5 22265767 22265819 -180819713 - L1MEc LINE L1 -6177 219 168 446 258 163 64 chr5 22265891 22265932 -180819600 - L1M4 LINE L1 -1032 5114 5078 2081 135 7 0 chr5 22265932 22266235 -180819297 + AluSx SINE Alu 5 309 -3 446 258 163 64 chr5 22266235 22266286 -180819246 - L1M4 LINE L1 -1068 5078 5033 1939 144 10 0 chr5 22266286 22266584 -180818948 - AluSx SINE Alu -9 303 3 446 258 163 64 chr5 22266584 22267049 -180818483 - L1M4 LINE L1 -1113 5033 4501 24 53 0 0 chr5 22267282 22267320 -180818212 + AT_rich Low_complexity Low_complexity 1 38 0 364 313 126 27 chr5 22268252 22268626 -180816906 + L1M4 LINE L1 4433 4843 -1303 29 70 0 0 chr5 22268661 22268718 -180816814 + AT_rich Low_complexity Low_complexity 1 57 0 238 279 39 29 chr5 22268772 22268876 -180816656 - MER21B LTR ERV1 -272 591 487 789 280 55 8 chr5 22269777 22270159 -180815373 + L1MC1 LINE L1 2650 3049 -3097 540 276 22 0 chr5 22270695 22270880 -180814652 + L1MC1 LINE L1 3230 3418 -2728 5051 269 37 11 chr5 22270897 22272581 -180812951 + L1MC1 LINE L1 3508 5236 -910 359 228 40 0 chr5 22272583 22272684 -180812848 + L1MA9 LINE L1 6181 6285 -27 21 0 0 0 chr5 22272708 22272729 -180812803 + AT_rich Low_complexity Low_complexity 1 21 0 748 121 0 92 chr5 22272786 22272927 -180812605 + LTR12 LTR ERV1 42 169 -545 4650 142 70 0 chr5 22273014 22273837 -180811695 + L1MC1 LINE L1 5313 6193 -140 1742 71 3 160 chr5 22273857 22274195 -180811337 + LTR12 LTR ERV1 1 285 -429 302 256 11 0 chr5 22274196 22274286 -180811246 + LTR30 LTR ERV1 553 643 -79 662 82 0 0 chr5 22274287 22274372 -180811160 + LTR12 LTR ERV1 481 565 -149 422 209 90 52 chr5 22274372 22274506 -180811026 + L1MC1 LINE L1 6195 6333 0 200 365 35 30 chr5 22274635 22274832 -180810700 + L2 LINE L2 1854 2051 -1263 1876 199 48 70 chr5 22275194 22275752 -180809780 + MLT2B3 LTR ERVL 1 546 -8 30 45 0 0 chr5 22276895 22276939 -180808593 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr5 22277104 22277130 -180808402 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr5 22277167 22277202 -180808330 + AT_rich Low_complexity Low_complexity 1 35 0 3251 169 26 20 chr5 22277333 22277936 -180807596 + MER4D LTR ERV1 1 607 -296 1914 39 0 22 chr5 22277936 22278167 -180807365 - AluY SINE Alu -2 309 84 1177 68 0 56 chr5 22278167 22278329 -180807203 - AluY SINE Alu -158 153 1 1055 165 181 34 chr5 22278340 22278577 -180806955 + MER4D LTR ERV1 603 874 -29 40 59 0 0 chr5 22278580 22278648 -180806884 + AT_rich Low_complexity Low_complexity 1 68 0 21 0 0 0 chr5 22278953 22278974 -180806558 + AT_rich Low_complexity Low_complexity 1 21 0 2792 165 162 18 chr5 22279038 22279649 -180805883 - LTR34 LTR ERV1 0 699 1 2094 152 16 31 chr5 22279652 22280033 -180805499 - THE1C LTR MaLR 0 375 1 2074 120 7 13 chr5 22280079 22280388 -180805144 - AluSx SINE Alu -5 307 1 2442 70 0 3 chr5 22280746 22281045 -180804487 + AluY SINE Alu 1 298 -13 401 270 45 25 chr5 22281169 22281369 -180804163 + L1MC/D LINE L1 5318 5521 -2287 482 348 44 45 chr5 22282309 22282883 -180802649 - HERVL LTR ERVL -381 5273 4701 255 319 35 18 chr5 22282997 22283110 -180802422 - HERVL LTR ERVL -1180 4584 4470 227 158 18 18 chr5 22284505 22284539 -180800993 + (TA)n Simple_repeat Simple_repeat 2 38 -20 1359 134 51 90 chr5 22284539 22284928 -180800604 + THE1C LTR MaLR 2 375 0 227 158 18 18 chr5 22284928 22284950 -180800582 + (TA)n Simple_repeat Simple_repeat 37 58 0 21 0 0 0 chr5 22285985 22286006 -180799526 + AT_rich Low_complexity Low_complexity 1 21 0 468 123 0 0 chr5 22286240 22286313 -180799219 + (TCCC)n Simple_repeat Simple_repeat 2 74 0 1356 223 24 7 chr5 22286313 22286600 -180798932 - AluJo SINE Alu -10 292 1 257 352 46 50 chr5 22287173 22287454 -180798078 + L2 LINE L2 2113 2392 -922 303 206 0 0 chr5 22287978 22288041 -180797491 - L1MC4 LINE L1 -1339 6703 6641 956 273 68 65 chr5 22288846 22289183 -180796349 + MLT1E LTR MaLR 48 388 -205 2237 113 3 0 chr5 22289183 22289483 -180796049 + AluSp SINE Alu 1 301 -12 956 273 68 65 chr5 22289483 22289529 -180796003 + MLT1E LTR MaLR 388 432 -161 417 94 0 0 chr5 22289529 22289593 -180795939 - L1P LINE L1 -3053 3093 3030 426 285 40 13 chr5 22289593 22289744 -180795788 + MLT1E LTR MaLR 430 584 -9 232 139 23 0 chr5 22289788 22289831 -180795701 - MER116 DNA Mariner 0 80 37 2523 51 0 10 chr5 22290005 22290316 -180795216 + AluY SINE Alu 2 309 -2 28 86 0 0 chr5 22290657 22290727 -180794805 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr5 22291689 22291710 -180793822 + AT_rich Low_complexity Low_complexity 1 21 0 317 125 18 0 chr5 22291759 22291815 -180793717 + GA-rich Low_complexity Low_complexity 3 59 0 21 36 0 0 chr5 22292025 22292053 -180793479 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr5 22292192 22292223 -180793309 + AT_rich Low_complexity Low_complexity 1 31 0 358 139 0 25 chr5 22292485 22292564 -180792968 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 227 191 15 0 chr5 22292951 22293019 -180792513 + (TA)n Simple_repeat Simple_repeat 1 69 0 238 146 18 18 chr5 22293019 22293074 -180792458 + GA-rich Low_complexity Low_complexity 1 55 0 231 178 0 22 chr5 22293152 22293197 -180792335 + LTR16B LTR ERVL 2 45 -419 2289 198 68 28 chr5 22293509 22293976 -180791556 + MLT2B1 LTR ERVL 1 448 -72 327 49 0 0 chr5 22293976 22294017 -180791515 + (TC)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chr5 22294016 22294043 -180791489 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 2289 198 68 28 chr5 22294017 22294075 -180791457 + MLT2B1 LTR ERVL 448 520 0 573 341 97 40 chr5 22294875 22295424 -180790108 + HERV16 LTR ERVL 993 1572 -3424 1118 323 57 19 chr5 22295493 22296241 -180789291 + HERV16 LTR ERVL 1758 2515 -2481 10516 109 54 14 chr5 22296323 22298094 -180787438 - MER4-int LTR ERV1 -246 6352 4511 42952 33 21 1 chr5 22298096 22304127 -180781405 + L1PA2 LINE L1 2 6155 0 189 0 0 0 chr5 22304131 22304152 -180781380 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 3529 102 70 20 chr5 22304152 22304738 -180780794 - MER4-int LTR ERV1 -2072 4526 3912 2495 102 65 65 chr5 22304772 22305312 -180780220 - MER4-int LTR ERV1 -3321 3277 2738 1149 209 16 19 chr5 22305313 22305571 -180779961 + LTR8 LTR ERV1 1 257 -434 4036 81 62 21 chr5 22305571 22306236 -180779296 - MER4A-int LTR ERV1 -4103 2495 1804 1304 99 74 79 chr5 22306234 22306324 -180779208 - MER4A-int LTR ERV1 -4210 1268 1179 * 2584 64 0 0 chr5 22306324 22306635 -180778897 + AluY SINE Alu 1 311 0 1304 99 74 79 chr5 22306635 22306933 -180778599 - MER4A-int LTR ERV1 -4299 1179 510 2459 108 136 89 chr5 22306940 22307191 -180778341 - MER4A-int LTR ERV1 -6019 579 341 2111 52 88 0 chr5 22307191 22307463 -180778069 + AluY SINE Alu 1 296 -15 2459 108 136 89 chr5 22307463 22307764 -180777768 - MER4A-int LTR ERV1 -6257 341 1 1434 156 78 47 chr5 22307768 22308101 -180777431 - MER4A LTR ERV1 -1 663 262 255 111 22 22 chr5 22308101 22308146 -180777386 - MER4A LTR ERV1 -566 98 54 850 297 90 29 chr5 22308467 22308619 -180776913 + LTR16B LTR ERVL 1 142 -322 1242 218 84 30 chr5 22308619 22309046 -180776486 - LTR7 LTR ERV1 0 450 1 850 297 90 29 chr5 22309046 22309314 -180776218 + LTR16B LTR ERVL 142 447 -17 746 196 7 0 chr5 22309416 22309559 -180775973 - L1PB4 LINE L1 -7 6149 6006 1644 226 64 10 chr5 22310366 22310774 -180774758 - MER87 LTR ERV1 -2 539 110 397 226 130 35 chr5 22310792 22310907 -180774625 - MER87 LTR ERV1 -397 144 19 227 365 83 39 chr5 22310929 22311110 -180774422 - L2 LINE L2 -38 3234 3046 379 304 136 29 chr5 22312038 22312311 -180773221 + MLT1J2 LTR MaLR 25 312 -134 3110 186 36 3 chr5 22312334 22312920 -180772612 - LTR62 LTR ERVK -2 717 113 491 290 51 42 chr5 22314323 22314537 -180770995 + MER20 DNA MER1_type 3 218 -1 192 77 0 0 chr5 22315195 22315221 -180770311 + (T)n Simple_repeat Simple_repeat 1 26 0 2357 98 0 0 chr5 22315224 22315531 -180770001 - AluY SINE Alu -4 307 1 668 37 0 0 chr5 22315701 22315783 -180769749 + HERVL-A2 LTR ERVL 5573 5654 0 2931 109 24 31 chr5 22315783 22316234 -180769298 + MLT2A2 LTR ERVL 1 448 -5 469 310 46 6 chr5 22316422 22316596 -180768936 + MLT1L LTR MaLR 371 551 -64 181 352 38 0 chr5 22316649 22316754 -180768778 + MIR SINE MIR 154 262 0 221 204 19 0 chr5 22316768 22316822 -180768710 + (TTA)n Simple_repeat Simple_repeat 3 57 0 25 0 0 0 chr5 22316946 22316971 -180768561 + AT_rich Low_complexity Low_complexity 1 25 0 3139 207 75 20 chr5 22318462 22318936 -180766596 - L1MB3 LINE L1 0 6183 5736 1923 190 130 21 chr5 22318936 22319468 -180766064 + LTR49 LTR ERV1 2 591 -4 3139 207 75 20 chr5 22319468 22320235 -180765297 - L1MB3 LINE L1 -447 5736 4870 4822 140 41 32 chr5 22320235 22320506 -180765026 - MER4D LTR ERV1 0 903 636 1891 120 4 7 chr5 22320506 22320782 -180764750 - AluSx SINE Alu 0 312 38 4822 140 41 32 chr5 22320782 22321405 -180764127 - MER4D LTR ERV1 -267 636 1 3139 207 75 20 chr5 22321405 22321422 -180764110 - L1MB3 LINE L1 -1313 4870 4855 185 182 18 0 chr5 22321909 22321964 -180763568 + (TA)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chr5 22322065 22322089 -180763443 + AT_rich Low_complexity Low_complexity 1 24 0 2200 123 51 14 chr5 22323010 22323361 -180762171 + THE1B LTR MaLR 1 364 0 11304 102 6 3 chr5 22323361 22324917 -180760615 + THE1B-int LTR MaLR 1 1562 -18 2105 85 85 29 chr5 22324924 22325264 -180760268 + THE1B LTR MaLR 1 359 -5 510 147 42 14 chr5 22325430 22325573 -180759959 + GA-rich Low_complexity Low_complexity 1 147 0 2032 214 57 42 chr5 22326947 22327495 -180758037 + MER34B LTR ERV1 10 565 0 24 0 0 0 chr5 22327856 22327880 -180757652 + AT_rich Low_complexity Low_complexity 1 24 0 2474 60 0 10 chr5 22328503 22328802 -180756730 - AluY SINE Alu -11 300 5 1882 154 30 3 chr5 22331058 22331357 -180754175 + AluSx SINE Alu 1 307 -5 1690 141 96 37 chr5 22331445 22331799 -180753733 + THE1C LTR MaLR 1 375 0 230 224 0 17 chr5 22331818 22331876 -180753656 + L1MCa LINE L1 2006 2062 -4364 * 250 234 0 64 chr5 22331860 22331954 -180753578 - L1MC4 LINE L1 -1340 6702 6615 238 203 0 17 chr5 22331904 22331963 -180753569 + L1MCa LINE L1 2006 2063 -4363 * 183 205 0 0 chr5 22331964 22332003 -180753529 + (TA)n Simple_repeat Simple_repeat 2 40 0 227 174 0 0 chr5 22332003 22332049 -180753483 - LTR66 LTR ERVL -171 439 394 488 106 55 12 chr5 22332055 22332294 -180753238 + (TA)n Simple_repeat Simple_repeat 1 249 0 250 84 74 21 chr5 22332338 22332433 -180753099 + (TATAA)n Simple_repeat Simple_repeat 5 104 0 34 0 0 0 chr5 22332534 22332568 -180752964 + AT_rich Low_complexity Low_complexity 1 34 0 645 93 22 44 chr5 22332568 22332751 -180752781 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 270 123 31 31 chr5 22332756 22332821 -180752711 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 560 152 51 0 chr5 22332822 22333126 -180752406 + (TA)n Simple_repeat Simple_repeat 1 319 0 228 214 0 0 chr5 22333266 22333308 -180752224 + (TG)n Simple_repeat Simple_repeat 1 42 0 326 206 9 103 chr5 22333311 22333418 -180752114 - MLT1E LTR MaLR -7 586 490 1563 143 129 57 chr5 22334142 22334492 -180751040 + THE1C LTR MaLR 1 375 0 192 77 0 0 chr5 22334648 22334674 -180750858 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 244 208 38 0 chr5 22334803 22334856 -180750676 + CT-rich Low_complexity Low_complexity 2 56 0 641 387 88 27 chr5 22334864 22335492 -180750040 - HAL1 LINE L1 -1830 677 12 241 333 0 0 chr5 22335809 22335875 -180749657 - MIR SINE MIR -149 113 48 3417 137 29 19 chr5 22335884 22336554 -180748978 + MER50 LTR ERV1 3 711 -23 9817 160 31 11 chr5 22337001 22339964 -180745568 - L1MA1 LINE L1 0 6302 3272 1070 158 37 84 chr5 22340383 22340680 -180744852 + L1MA7 LINE L1 6007 6289 -2 22 0 0 0 chr5 22340680 22340702 -180744830 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr5 22341416 22341447 -180744085 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr5 22342327 22342356 -180743176 + AT_rich Low_complexity Low_complexity 1 29 0 1771 118 0 12 chr5 22342527 22342781 -180742751 - AluSx SINE Alu -25 287 37 456 35 0 0 chr5 22343981 22344039 -180741493 + (CA)n Simple_repeat Simple_repeat 2 59 0 347 279 78 0 chr5 22344340 22344469 -180741063 - MIR SINE MIR -3 259 121 674 302 62 19 chr5 22344727 22344830 -180740702 + MER45C DNA AcHobo 1 98 -855 2067 128 3 3 chr5 22344830 22345128 -180740404 - AluSc SINE Alu -11 298 1 674 302 62 19 chr5 22345128 22345282 -180740250 + MER45C DNA AcHobo 98 269 -684 486 328 0 0 chr5 22345332 22345454 -180740078 + MER45C DNA AcHobo 414 535 -418 4694 190 77 30 chr5 22346179 22346429 -180739103 + L1MA8 LINE L1 3989 4226 -2065 2579 65 0 0 chr5 22346429 22346739 -180738793 + AluY SINE Alu 1 310 -1 4694 190 77 30 chr5 22346739 22347314 -180738218 + L1MA8 LINE L1 4226 4772 -1519 655 134 53 53 chr5 22347314 22347501 -180738031 + L1MA7 LINE L1 6104 6290 -1 4694 190 77 30 chr5 22347501 22348147 -180737385 + L1MA8 LINE L1 4772 5386 -905 2547 40 0 7 chr5 22348147 22348449 -180737083 - AluY SINE Alu -11 300 1 4694 190 77 30 chr5 22348449 22349170 -180736362 + L1MA8 LINE L1 5386 6289 -2 186 103 0 0 chr5 22349262 22349291 -180736241 + (CA)n Simple_repeat Simple_repeat 2 30 0 402 285 146 106 chr5 22349297 22350216 -180735316 - L2 LINE L2 -901 2413 1458 1833 129 27 20 chr5 22350742 22351036 -180734496 - AluSq SINE Alu -9 304 9 524 345 35 16 chr5 22351111 22351427 -180734105 + LTR16C LTR ERVL 170 491 0 239 340 159 39 chr5 22351428 22351725 -180733807 - L2 LINE L2 -2323 991 731 2095 120 0 7 chr5 22351725 22352036 -180733496 + AluSx SINE Alu 2 310 0 239 340 159 39 chr5 22352036 22352278 -180733254 - L2 LINE L2 -2583 731 386 288 268 5 32 chr5 22352490 22352601 -180732931 + MIR SINE MIR 40 149 -65 989 274 72 93 chr5 22353431 22353500 -180732032 - MLT1E LTR MaLR -14 579 510 2302 94 7 0 chr5 22353500 22353808 -180731724 - AluSx SINE Alu -2 310 1 989 274 72 93 chr5 22353808 22354388 -180731144 - MLT1E LTR MaLR -83 510 9 1855 173 35 3 chr5 22354495 22354842 -180730690 - MER46B DNA MER2_type 0 236 4 355 325 96 37 chr5 22354884 22355002 -180730530 - L2 LINE L2 -164 3149 3015 1948 129 26 59 chr5 22355002 22355390 -180730142 - THE1C LTR MaLR 0 375 1 355 325 96 37 chr5 22355390 22355459 -180730073 - L2 LINE L2 -298 3015 2951 384 318 221 21 chr5 22355483 22355589 -180729943 - L2 LINE L2 -529 2785 2701 4631 30 4 4 chr5 22355589 22356147 -180729385 + LTR6B LTR ERV1 1 558 0 384 318 221 21 chr5 22356147 22356370 -180729162 - L2 LINE L2 -612 2702 2390 257 381 36 7 chr5 22356395 22356534 -180728998 - L2 LINE L2 -1167 2147 2005 182 279 47 100 chr5 22356582 22356657 -180728875 - L2 LINE L2 -2156 1158 1081 2190 111 0 16 chr5 22356657 22356972 -180728560 + AluSg SINE Alu 1 310 0 182 279 47 100 chr5 22356972 22357086 -180728446 - L2 LINE L2 -2233 1081 979 1292 168 50 0 chr5 22357086 22357324 -180728208 + MER31A LTR ERV1 1 250 -235 22 0 0 0 chr5 22357595 22357617 -180727915 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr5 22357676 22357704 -180727828 + AT_rich Low_complexity Low_complexity 1 28 0 4775 62 0 0 chr5 22357706 22358304 -180727228 + L1PA7 LINE L1 5557 6154 0 1375 179 57 24 chr5 22358334 22358631 -180726901 + AluSg SINE Alu 1 307 -3 2466 161 52 0 chr5 22359325 22359766 -180725766 - Tigger1 DNA MER2_type 0 2418 1955 2523 197 30 8 chr5 22359786 22360288 -180725244 - Tigger1 DNA MER2_type -1902 516 4 248 105 0 0 chr5 22360323 22360361 -180725171 - MLT2A2 LTR ERVL 0 453 416 225 178 0 0 chr5 22360379 22360424 -180725108 + L1MC4 LINE L1 6659 6703 -1339 2969 74 28 0 chr5 22360432 22360824 -180724708 - MLT2A1 LTR ERVL -40 404 2 30 0 0 0 chr5 22361148 22361178 -180724354 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr5 22361484 22361507 -180724025 + AT_rich Low_complexity Low_complexity 1 23 0 276 370 16 16 chr5 22362053 22362180 -180723352 + L2 LINE L2 2593 2719 -595 1869 119 10 31 chr5 22362180 22362474 -180723058 + AluSx SINE Alu 1 288 -24 182 128 26 0 chr5 22362476 22362515 -180723017 + G-rich Low_complexity Low_complexity 2 41 0 325 292 99 55 chr5 22362515 22362717 -180722815 + L2 LINE L2 2703 2913 -401 385 291 38 87 chr5 22362731 22363020 -180722512 + L2 LINE L2 3021 3295 -18 2308 87 3 0 chr5 22364724 22365023 -180720509 - AluY SINE Alu -11 300 1 707 270 25 94 chr5 22365228 22365621 -180719911 - Charlie6 DNA MER1_type -12 3488 3123 215 122 0 24 chr5 22365623 22365664 -180719868 + (TA)n Simple_repeat Simple_repeat 2 41 0 333 152 10 101 chr5 22365664 22365763 -180719769 - L1MC4 LINE L1 -1339 6703 6614 1026 157 15 46 chr5 22365805 22366002 -180719530 - AluSg/x SINE Alu -27 285 95 225 198 70 23 chr5 22366197 22366283 -180719249 - L1MC4 LINE L1 -1339 6703 6614 1546 188 3 31 chr5 22366312 22366605 -180718927 - AluSx SINE Alu -27 285 1 1478 255 20 70 chr5 22366746 22367447 -180718085 + L1ME LINE L1 82 747 -5323 3182 243 35 23 chr5 22367471 22368412 -180717120 - Charlie6 DNA MER1_type -1248 2252 1301 912 214 52 128 chr5 22368419 22368812 -180716720 + MLT1A2 LTR MaLR 11 456 -1 2319 279 105 35 chr5 22368833 22369900 -180715632 - Charlie6 DNA MER1_type -2229 1271 130 2060 115 3 0 chr5 22370449 22370737 -180714795 + AluSx SINE Alu 1 289 -23 1443 172 42 103 chr5 22370834 22371202 -180714330 - MLT1D LTR MaLR 0 505 161 2173 146 33 28 chr5 22371202 22371592 -180713940 + Tigger2a DNA MER2_type 1 392 -42 450 213 13 97 chr5 22371651 22371806 -180713726 - MLT1D LTR MaLR -363 142 1 280 301 21 14 chr5 22372111 22372254 -180713278 + (TA)n Simple_repeat Simple_repeat 2 145 0 231 200 0 0 chr5 22372257 22372307 -180713225 - L1MC4 LINE L1 -1340 6702 6653 1385 269 0 3 chr5 22372374 22372686 -180712846 - MER82 DNA MER2_type -34 619 309 4692 193 34 6 chr5 22372686 22373562 -180711970 + MER54A LTR ERVL 1 901 0 1224 199 46 42 chr5 22373566 22373698 -180711834 - MER82 DNA MER2_type -344 309 179 4098 88 52 5 chr5 22373698 22374279 -180711253 - LTR14B LTR ERVK 0 608 1 1224 199 46 42 chr5 22374279 22374453 -180711079 - MER82 DNA MER2_type -474 179 2 351 0 0 0 chr5 22374508 22374547 -180710985 + (TA)n Simple_repeat Simple_repeat 1 39 0 2323 100 6 0 chr5 22374783 22375094 -180710438 + AluSp SINE Alu 1 313 0 2111 125 3 0 chr5 22375500 22375805 -180709727 - AluSx SINE Alu -6 306 1 22 0 0 0 chr5 22378175 22378197 -180707335 + AT_rich Low_complexity Low_complexity 1 22 0 2373 43 0 0 chr5 22380358 22380662 -180704870 + AluY SINE Alu 1 304 0 373 307 98 7 chr5 22380693 22380846 -180704686 - MIR SINE MIR -64 198 32 269 212 131 10 chr5 22381423 22381522 -180704010 - MIR SINE MIR -74 188 78 315 213 25 0 chr5 22382925 22383005 -180702527 - L1M4c LINE L1 -4198 2186 2105 675 197 120 0 chr5 22383015 22383157 -180702375 - FRAM SINE Alu -19 157 1 1044 243 12 52 chr5 22383166 22383629 -180701903 - L1M4c LINE L1 -4285 2099 1560 312 27 0 0 chr5 22383629 22383666 -180701866 + (TG)n Simple_repeat Simple_repeat 2 38 0 235 263 0 0 chr5 22383682 22383739 -180701793 - L1MEc LINE L1 -3961 2254 2198 425 35 0 0 chr5 22384692 22384750 -180700782 + L1PB1 LINE L1 6094 6151 0 24 67 0 0 chr5 22385126 22385171 -180700361 + AT_rich Low_complexity Low_complexity 1 45 0 622 232 16 0 chr5 22385818 22385943 -180699589 + FRAM SINE Alu 5 131 -45 423 56 0 0 chr5 22385945 22385999 -180699533 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 2144 110 0 3 chr5 22389071 22389362 -180696170 - AluSx SINE Alu -22 290 1 205 268 189 37 chr5 22389520 22389684 -180695848 + L2 LINE L2 3124 3312 -1 23 33 0 0 chr5 22390020 22390050 -180695482 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr5 22390130 22390166 -180695366 + AT_rich Low_complexity Low_complexity 1 36 0 260 312 21 11 chr5 22390199 22390292 -180695240 - MER76 LTR ERV -402 286 193 551 264 46 23 chr5 22390340 22390514 -180695018 - MER76 LTR ERV -509 179 2 1008 298 156 42 chr5 22390668 22390769 -180694763 - L1MEc LINE L1 -5480 916 828 3804 130 15 40 chr5 22390769 22391492 -180694040 - L1MA4 LINE L1 -3 6297 5593 1008 298 156 42 chr5 22391492 22392178 -180693354 - L1MEc LINE L1 -5568 828 39 22 56 0 0 chr5 22393396 22393432 -180692100 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr5 22393630 22393659 -180691873 + AT_rich Low_complexity Low_complexity 1 29 0 246 261 37 80 chr5 22394006 22394194 -180691338 - L1ME LINE L1 -265 5856 5677 275 301 29 6 chr5 22394379 22394552 -180690980 - L1P5 LINE L1 -710 5441 5265 28 0 0 0 chr5 22394629 22394657 -180690875 + AT_rich Low_complexity Low_complexity 1 28 0 5527 223 76 21 chr5 22394657 22395241 -180690291 + L1MC3 LINE L1 6206 6757 -1028 192 40 0 0 chr5 22395241 22395266 -180690266 + (CA)n Simple_repeat Simple_repeat 2 26 0 5527 223 76 21 chr5 22395266 22396174 -180689358 + L1MC3 LINE L1 6757 7779 -6 363 117 0 0 chr5 22396847 22396907 -180688625 - L1MA3 LINE L1 0 6305 6246 709 114 53 0 chr5 22396922 22397054 -180688478 - L1PA13 LINE L1 0 6163 6025 308 259 53 53 chr5 22397651 22397782 -180687750 + MLT1H LTR MaLR 25 155 -394 30 0 0 0 chr5 22398232 22398262 -180687270 + AT_rich Low_complexity Low_complexity 1 30 0 40640 44 39 1 chr5 22398821 22404748 -180680784 + L1HS LINE L1 2 6155 0 22 56 0 0 chr5 22405543 22405579 -180679953 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr5 22405777 22405806 -180679726 + AT_rich Low_complexity Low_complexity 1 29 0 246 261 37 80 chr5 22406153 22406341 -180679191 - L1ME LINE L1 -265 5856 5677 275 301 29 6 chr5 22406526 22406699 -180678833 - L1P5 LINE L1 -710 5441 5265 28 0 0 0 chr5 22406776 22406804 -180678728 + AT_rich Low_complexity Low_complexity 1 28 0 5527 223 76 21 chr5 22406804 22407388 -180678144 + L1MC3 LINE L1 6206 6757 -1028 192 40 0 0 chr5 22407388 22407413 -180678119 + (CA)n Simple_repeat Simple_repeat 2 26 0 5527 223 76 21 chr5 22407413 22408321 -180677211 + L1MC3 LINE L1 6757 7779 -6 363 117 0 0 chr5 22408994 22409054 -180676478 - L1MA3 LINE L1 0 6305 6246 709 114 53 0 chr5 22409069 22409201 -180676331 - L1PA13 LINE L1 0 6163 6025 308 259 53 53 chr5 22409798 22409929 -180675603 + MLT1H LTR MaLR 25 155 -394 30 0 0 0 chr5 22410379 22410409 -180675123 + AT_rich Low_complexity Low_complexity 1 30 0 207 234 0 0 chr5 22411368 22411445 -180674087 + CT-rich Low_complexity Low_complexity 2 78 0 390 294 22 50 chr5 22412145 22412325 -180673207 + L1MC4 LINE L1 6458 6632 -1410 598 219 63 85 chr5 22412334 22412404 -180673128 + L1MC4 LINE L1 6860 6930 -961 215 30 0 30 chr5 22412404 22412437 -180673095 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 598 219 63 85 chr5 22412437 22412758 -180672774 + L1MC4 LINE L1 6930 7395 -496 2171 91 0 14 chr5 22413401 22413697 -180671835 + AluSp SINE Alu 1 292 -21 33 56 0 0 chr5 22413939 22413993 -180671539 + AT_rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr5 22414250 22414278 -180671254 + AT_rich Low_complexity Low_complexity 1 28 0 237 316 105 13 chr5 22414700 22414852 -180670680 - L2 LINE L2 -1232 2082 1917 25 0 0 0 chr5 22414873 22414898 -180670634 + AT_rich Low_complexity Low_complexity 1 25 0 187 387 0 0 chr5 22415056 22415118 -180670414 + MIR SINE MIR 65 126 -136 21 36 0 0 chr5 22416965 22416993 -180668539 + AT_rich Low_complexity Low_complexity 1 28 0 2082 117 30 0 chr5 22417099 22417399 -180668133 + AluSc SINE Alu 1 309 0 288 182 0 0 chr5 22418742 22418797 -180666735 - MLT1E2 LTR MaLR -1 625 571 1561 274 30 62 chr5 22419741 22420350 -180665182 + MLT1E LTR MaLR 5 593 0 665 281 36 5 chr5 22420614 22420810 -180664722 - MER20 DNA MER1_type -17 202 1 37 23 0 0 chr5 22421112 22421156 -180664376 + AT_rich Low_complexity Low_complexity 1 44 0 443 331 43 46 chr5 22421269 22421619 -180663913 + ERVL LTR ERVL 3806 4154 -1610 2365 134 3 6 chr5 22421635 22422000 -180663532 - THE1B LTR MaLR 0 364 1 1161 183 58 6 chr5 22422224 22422659 -180662873 - LTR54 LTR ERV1 0 510 1 2265 213 104 19 chr5 22422824 22423398 -180662134 + MER67B LTR ERV1 39 661 0 771 172 161 33 chr5 22423827 22424209 -180661323 - LTR54B LTR ERV1 -37 461 1 338 254 113 54 chr5 22424397 22424582 -180660950 + LTR33A LTR ERVL 321 516 -7 684 226 0 0 chr5 22424613 22424737 -180660795 + FLAM_A SINE Alu 2 125 -8 296 232 14 14 chr5 22424769 22424907 -180660625 + (TA)n Simple_repeat Simple_repeat 2 139 0 200 197 0 33 chr5 22425565 22425626 -180659906 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 323 325 98 31 chr5 22425931 22426217 -180659315 - L1MC4 LINE L1 -25 8017 7713 630 65 37 19 chr5 22426287 22426395 -180659137 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 962 260 82 11 chr5 22426399 22426680 -180658852 - AluJb SINE Alu -1 301 1 643 289 12 6 chr5 22426681 22426847 -180658685 - MER110 LTR ERV1 -264 227 61 345 78 182 39 chr5 22427805 22427882 -180657650 + MSTB LTR MaLR 1 88 -338 319 304 112 0 chr5 22427882 22428043 -180657489 - MER69 DNA AcHobo -854 372 194 767 271 102 24 chr5 22428111 22428681 -180656851 + L1MC2 LINE L1 3445 4169 -1977 * 31503 109 11 36 chr5 22428677 22434754 -180650778 + L1PA7 LINE L1 223 6467 -2 666 257 53 5 chr5 22434922 22435128 -180650404 + L1MC2 LINE L1 4733 4948 -1198 4924 183 41 43 chr5 22435246 22436153 -180649379 + L1MC2 LINE L1 4925 5832 -512 1662 193 6 3 chr5 22436153 22436464 -180649068 + AluJb SINE Alu 1 312 0 4924 183 41 43 chr5 22436464 22436485 -180649047 + L1MC2 LINE L1 5832 5852 -492 2305 117 0 0 chr5 22436485 22436794 -180648738 + AluSg SINE Alu 1 309 -1 195 42 0 0 chr5 22436799 22436823 -180648709 + (GA)n Simple_repeat Simple_repeat 1 24 0 4924 183 41 43 chr5 22436823 22437311 -180648221 + L1MC2 LINE L1 5856 6344 0 189 242 121 15 chr5 22438260 22438326 -180647206 + MIR SINE MIR 170 242 -20 195 42 0 0 chr5 22440111 22440135 -180645397 + (TG)n Simple_repeat Simple_repeat 2 25 0 211 234 21 0 chr5 22440149 22440196 -180645336 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 225 0 0 0 chr5 22440202 22440227 -180645305 + (TG)n Simple_repeat Simple_repeat 2 26 0 2200 119 0 13 chr5 22441733 22442045 -180643487 - AluSc SINE Alu 0 309 2 378 283 14 86 chr5 22442325 22442604 -180642928 + MLT1L LTR MaLR 46 304 -311 282 310 39 8 chr5 22442716 22442845 -180642687 + MLT1L LTR MaLR 470 602 -13 243 406 0 10 chr5 22443871 22443972 -180641560 + L2 LINE L2 3173 3272 0 234 328 35 52 chr5 22444323 22444439 -180641093 - MER5B DNA MER1_type -63 115 2 254 307 92 31 chr5 22444862 22445025 -180640507 + MIR SINE MIR 88 260 -2 200 297 0 77 chr5 22445290 22445381 -180640151 - L2 LINE L2 0 3313 3230 213 164 36 55 chr5 22445832 22445887 -180639645 - L2 LINE L2 -670 2644 2591 1155 247 29 47 chr5 22446036 22446376 -180639156 + MLT1B LTR MaLR 5 338 -52 1890 127 3 41 chr5 22446942 22447270 -180638262 + AluSx SINE Alu 1 317 0 2024 187 16 28 chr5 22447547 22448000 -180637532 + MSTB LTR MaLR 6 425 -1 8290 208 15 7 chr5 22448002 22449638 -180635894 + MSTB-int LTR MaLR 2 1651 0 2480 160 12 14 chr5 22449638 22450063 -180635469 + MSTB LTR MaLR 1 424 -2 206 385 66 0 chr5 22450238 22450360 -180635172 + MIR SINE MIR 54 183 -79 438 20 0 0 chr5 22450423 22450474 -180635058 + (CA)n Simple_repeat Simple_repeat 2 52 0 2884 141 42 4 chr5 22451280 22451775 -180633757 - MER75 DNA T2_type 0 514 1 1448 220 43 12 chr5 22451844 22452171 -180633361 + MER1B DNA MER1_type 1 337 0 24 32 0 0 chr5 22452297 22452328 -180633204 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr5 22452716 22452761 -180632771 + AT_rich Low_complexity Low_complexity 1 45 0 3071 94 4 58 chr5 22452970 22453322 -180632210 - L1MA2 LINE L1 0 6304 5989 2304 96 0 0 chr5 22453322 22453613 -180631919 - AluSg SINE Alu -9 301 11 3071 94 4 58 chr5 22453613 22453793 -180631739 - L1MA2 LINE L1 -315 5989 5801 1791 174 22 17 chr5 22453969 22454331 -180631201 - L1 LINE L1 -1372 4774 4411 2038 113 6 41 chr5 22454331 22454519 -180631013 - AluSq SINE Alu -6 307 133 5305 153 30 45 chr5 22454519 22455605 -180629927 + MER11C LTR ERVK 1 1070 -1 2038 113 6 41 chr5 22455605 22455734 -180629798 - AluSq SINE Alu -180 133 1 385 71 29 0 chr5 22455748 22455818 -180629714 + L1MA7 LINE L1 6220 6291 0 1781 188 16 24 chr5 22456147 22456530 -180629002 + MLT1B LTR MaLR 3 382 -8 639 228 49 38 chr5 22456651 22456835 -180628697 + MER5A DNA MER1_type 4 189 0 255 264 107 41 chr5 22457001 22457122 -180628410 - Charlie8 DNA MER1_type -2273 144 16 2021 136 0 0 chr5 22457259 22457570 -180627962 + AluSg SINE Alu 1 311 0 2340 89 0 10 chr5 22460549 22460862 -180624670 + AluSx SINE Alu 1 310 -2 874 287 15 42 chr5 22461766 22462101 -180623431 + MLT2C1 LTR ERVL 13 338 -59 1548 237 62 21 chr5 22462247 22462715 -180622817 - MLT1D LTR MaLR -18 487 1 29 0 0 0 chr5 22462846 22462875 -180622657 + AT_rich Low_complexity Low_complexity 1 29 0 1454 234 33 9 chr5 22463299 22463628 -180621904 - MLT1A1 LTR MaLR -28 337 1 1387 164 194 10 chr5 22464580 22464873 -180620659 - MER47A DNA MER2_type 0 366 20 1050 33 8 0 chr5 22465209 22465331 -180620201 + AluY SINE Alu 1 123 -188 556 201 49 10 chr5 22465435 22465639 -180619893 + AluY SINE Alu 89 300 -11 1484 185 34 27 chr5 22465921 22466213 -180619319 - AluSx SINE Alu -18 294 1 21 57 0 0 chr5 22466219 22466254 -180619278 + AT_rich Low_complexity Low_complexity 1 35 0 1958 117 0 0 chr5 22466666 22466939 -180618593 - AluSg SINE Alu -37 273 1 326 304 31 62 chr5 22467101 22467262 -180618270 - L2 LINE L2 0 3313 3158 252 301 22 44 chr5 22467439 22467575 -180617957 + L2 LINE L2 3009 3141 -172 419 233 50 76 chr5 22469175 22469347 -180616185 + MLT1E2 LTR MaLR 82 260 -264 409 215 47 56 chr5 22469398 22469505 -180616027 + MLT1E2 LTR MaLR 391 496 -130 234 91 0 0 chr5 22469528 22469561 -180615971 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 4559 204 8 70 chr5 22469561 22470770 -180614762 + L1P LINE L1 2466 3599 -2547 21 36 0 0 chr5 22470894 22470922 -180614610 + AT_rich Low_complexity Low_complexity 1 28 0 865 229 61 109 chr5 22473108 22473349 -180612183 - MER67C LTR ERV1 -4 706 455 2132 96 10 3 chr5 22473349 22473652 -180611880 - AluY SINE Alu -6 305 1 1470 186 0 41 chr5 22473662 22473957 -180611575 - AluJo SINE Alu -22 290 8 865 229 61 109 chr5 22473957 22474325 -180611207 - MER67C LTR ERV1 -264 446 116 546 274 68 32 chr5 22474448 22474828 -180610704 - Charlie2 DNA MER1_type -1 2861 2468 820 205 10 10 chr5 22474976 22475171 -180610361 - Charlie2 DNA MER1_type -636 2226 2032 275 257 29 29 chr5 22475204 22475255 -180610277 - Charlie2 DNA MER1_type -897 1965 1915 216 0 0 0 chr5 22475255 22475279 -180610253 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 275 257 29 29 chr5 22475279 22475332 -180610200 - Charlie2 DNA MER1_type -946 1916 1861 444 273 122 63 chr5 22475347 22475633 -180609899 - Charlie2 DNA MER1_type -2465 317 15 1855 151 6 39 chr5 22475840 22476151 -180609381 - AluSx SINE Alu -11 301 1 1052 178 17 0 chr5 22476216 22476390 -180609142 + AluJb SINE Alu 117 293 -19 1668 204 14 19 chr5 22478059 22478426 -180607106 - MER89 LTR ERV1 0 559 195 264 183 11 86 chr5 22478398 22478491 -180607041 - MER89 LTR ERV1 -473 86 1 * 226 309 22 43 chr5 22479062 22479201 -180606331 + MLT1I LTR MaLR 11 146 -263 2154 126 0 0 chr5 22479447 22479740 -180605792 - AluSg SINE Alu -17 293 1 342 0 0 0 chr5 22481095 22481133 -180604399 + (TG)n Simple_repeat Simple_repeat 1 38 0 517 272 82 31 chr5 22482350 22482545 -180602987 - MLT1J2 LTR MaLR -6 444 240 1480 212 0 0 chr5 22483200 22483459 -180602073 + AluSq SINE Alu 1 259 -54 5488 57 48 8 chr5 22484633 22485368 -180600164 + L1PA6 LINE L1 5390 6153 -1 659 165 38 8 chr5 22486081 22486214 -180599318 - LTR3b LTR ERVK -47 453 317 4630 159 31 43 chr5 22486214 22487564 -180597968 - HERVK3 LTR ERVK -384 5561 1321 427 255 0 31 chr5 22487552 22487650 -180597882 - HERVK3 LTR ERVK -6563 680 586 * 641 241 89 15 chr5 22487706 22487909 -180597623 - HERVK3 LTR ERVK -6971 272 55 265 127 254 0 chr5 22487973 22488028 -180597504 - HERVK3 LTR ERVK -7025 218 150 219 182 36 0 chr5 22488121 22488176 -180597356 + (CTACT)n Simple_repeat Simple_repeat 4 60 0 562 230 179 63 chr5 22488564 22488899 -180596633 - MLT1A2 LTR MaLR 0 374 1 219 170 0 0 chr5 22491814 22491861 -180593671 + (TA)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr5 22492631 22492661 -180592871 + AT_rich Low_complexity Low_complexity 1 30 0 228 35 0 0 chr5 22493174 22493203 -180592329 + (TA)n Simple_repeat Simple_repeat 2 30 0 21 82 0 0 chr5 22493674 22493723 -180591809 + AT_rich Low_complexity Low_complexity 1 49 0 1209 229 10 10 chr5 22493852 22494140 -180591392 + AluJo SINE Alu 1 288 -24 430 277 111 65 chr5 22494464 22494789 -180590743 + L1ME1 LINE L1 1093 1432 -4994 509 209 0 9 chr5 22494878 22494988 -180590544 + L1ME1 LINE L1 4388 4496 -1930 22 0 0 0 chr5 22495067 22495089 -180590443 + AT_rich Low_complexity Low_complexity 1 22 0 1645 181 64 61 chr5 22495185 22495392 -180590140 - LTR57 LTR ERVL 0 411 201 2573 48 0 0 chr5 22495392 22495702 -180589830 - AluY SINE Alu -1 310 1 1645 181 64 61 chr5 22495702 22495903 -180589629 - LTR57 LTR ERVL -210 201 2 276 257 89 46 chr5 22496015 22496252 -180589280 + L1ME1 LINE L1 4737 4983 -1443 216 130 0 43 chr5 22496267 22496313 -180589219 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 954 291 64 15 chr5 22496351 22496743 -180588789 + L1ME1 LINE L1 6031 6441 -5 2165 102 0 10 chr5 22497062 22497375 -180588157 - AluSg SINE Alu 0 310 1 23 33 0 0 chr5 22497480 22497510 -180588022 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr5 22497692 22497735 -180587797 + AT_rich Low_complexity Low_complexity 1 43 0 216 265 231 34 chr5 22499045 22499162 -180586370 + MER5B DNA MER1_type 4 143 -35 2328 60 0 0 chr5 22499249 22499551 -180585981 - L1PA5 LINE L1 0 6154 5853 2162 38 0 4 chr5 22499551 22499814 -180585718 + L1PA5 LINE L1 5600 5861 -293 22 0 0 0 chr5 22499820 22499842 -180585690 + AT_rich Low_complexity Low_complexity 1 22 0 205 171 0 0 chr5 22500063 22500098 -180585434 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 937 308 68 16 chr5 22500178 22500604 -180584928 + MLT1J LTR MaLR 4 451 -60 202 258 15 45 chr5 22500606 22500672 -180584860 + MER5B DNA MER1_type 3 66 -112 1953 137 7 0 chr5 22501173 22501465 -180584067 - AluSx SINE Alu -18 294 1 30 93 0 0 chr5 22501545 22501631 -180583901 + AT_rich Low_complexity Low_complexity 1 86 0 1096 253 133 41 chr5 22503032 22503550 -180581982 - MLT1F1 LTR MaLR -2 565 3 213 318 73 9 chr5 22503603 22503713 -180581819 + L2 LINE L2 854 970 -2344 333 279 152 44 chr5 22503766 22503924 -180581608 + MER5B DNA MER1_type 1 175 -3 804 240 55 10 chr5 22503982 22504182 -180581350 + MER58A DNA MER1_type 4 212 -12 267 31 0 0 chr5 22504220 22504252 -180581280 + (TC)n Simple_repeat Simple_repeat 1 32 0 266 297 52 58 chr5 22504912 22505067 -180580465 - HAL1 LINE L1 -2043 464 311 666 193 183 67 chr5 22505172 22505565 -180579967 - MER31B LTR ERV1 0 514 1 1796 179 105 10 chr5 22505635 22506026 -180579506 - MSTA LTR MaLR 0 428 1 1901 150 29 42 chr5 22506058 22506438 -180579094 + THE1C LTR MaLR 1 375 0 213 226 0 0 chr5 22506514 22506567 -180578965 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 599 244 93 39 chr5 22506762 22507020 -180578512 - MER20B DNA MER1_type -278 505 234 2215 115 3 0 chr5 22507733 22508045 -180577487 - AluSp SINE Alu 0 313 1 729 256 112 48 chr5 22508105 22508397 -180577135 + MER65A LTR ERV1 1 330 -115 2052 131 150 5 chr5 22508397 22508771 -180576761 + MSTA LTR MaLR 1 428 0 729 256 112 48 chr5 22508771 22508896 -180576636 + MER65A LTR ERV1 330 445 0 448 230 0 0 chr5 22509163 22509263 -180576269 + LTR23-int LTR ERV1 891 990 -4133 304 204 186 9 chr5 22509265 22509378 -180576154 + MER34C LTR ERV1 160 292 -293 862 246 83 102 chr5 22509430 22510871 -180574661 + LTR23-int LTR ERV1 1161 2573 -2550 384 236 18 9 chr5 22510869 22510979 -180574553 + LTR23-int LTR ERV1 2481 2591 -2345 * 1773 282 45 53 chr5 22510986 22511738 -180573794 + L1PA12 LINE L1 2 747 -6834 5679 111 31 9 chr5 22511740 22512612 -180572920 + L1PA15 LINE L1 5275 6165 0 1315 161 113 127 chr5 22512672 22513231 -180572301 + LTR23-int LTR ERV1 4026 4576 -1755 417 226 57 0 chr5 22614354 22614460 -180471072 - MIR SINE MIR -120 142 31 2629 51 0 3 chr5 22615505 22615817 -180469715 - AluY SINE Alu 0 311 1 9271 69 5 15 chr5 22616443 22617259 -180468273 - L1PA3 LINE L1 0 6155 5333 2210 101 7 0 chr5 22617259 22617546 -180467986 - AluSx SINE Alu -17 295 7 9271 69 5 15 chr5 22617546 22618754 -180466778 - L1P1 LINE L1 -822 5333 4126 1981 21 0 0 chr5 22618754 22618988 -180466544 + L1P1 LINE L1 5350 5583 -572 1886 88 0 0 chr5 22619091 22619331 -180466201 + AluSq SINE Alu 74 313 0 1987 106 67 0 chr5 22620838 22621121 -180464411 - AluSg1 SINE Alu -7 302 1 789 163 75 0 chr5 22621232 22621379 -180464153 - AluSg/x SINE Alu -13 296 139 300 306 61 66 chr5 22621845 22622041 -180463491 + LTR33 LTR ERVL 304 498 -23 24 67 0 0 chr5 22622069 22622114 -180463418 + AT_rich Low_complexity Low_complexity 1 45 0 2016 143 62 11 chr5 22622168 22622525 -180463007 + THE1C LTR MaLR 1 375 0 8446 138 22 43 chr5 22622562 22623391 -180462141 + THE1C-int LTR MaLR 59 845 -735 2339 76 7 7 chr5 22623391 22623693 -180461839 + AluY SINE Alu 1 302 -9 8446 138 22 43 chr5 22623693 22624295 -180461237 + THE1C-int LTR MaLR 845 1459 -121 1128 139 19 48 chr5 22624300 22624509 -180461023 + THE1C LTR MaLR 173 375 0 191 348 22 22 chr5 22624958 22625050 -180460482 - L2 LINE L2 0 3272 3181 279 262 131 0 chr5 22625199 22625283 -180460249 - MER3 DNA MER1_type -114 95 1 763 268 68 19 chr5 22625332 22625597 -180459935 - LTR16C LTR ERVL -71 420 143 475 222 81 45 chr5 22625740 22625938 -180459594 - MER3 DNA MER1_type 0 209 5 21 0 0 0 chr5 22627030 22627051 -180458481 + AT_rich Low_complexity Low_complexity 1 21 0 6158 160 25 0 chr5 22627550 22628617 -180456915 - Tigger1 DNA MER2_type 0 2418 1325 257 242 0 0 chr5 22628621 22628687 -180456845 + (TA)n Simple_repeat Simple_repeat 2 67 0 7183 158 20 3 chr5 22628864 22630075 -180455457 - Tigger1 DNA MER2_type -1187 1231 1 1997 247 36 0 chr5 22630097 22630518 -180455014 + MER70A LTR ERVL 1 436 -36 264 115 213 16 chr5 22630523 22630584 -180454948 + MER70A LTR ERVL 400 472 0 2554 59 0 3 chr5 22630654 22630961 -180454571 - AluY SINE Alu -5 306 1 269 188 0 31 chr5 22631417 22631481 -180454051 + L1MB8 LINE L1 6108 6169 -9 382 224 82 34 chr5 22631957 22632104 -180453428 - L2 LINE L2 -2429 885 732 22 56 0 0 chr5 22632964 22633000 -180452532 + AT_rich Low_complexity Low_complexity 1 36 0 1012 98 0 0 chr5 22633117 22633249 -180452283 + AluY SINE Alu 1 132 -179 531 335 58 29 chr5 22634055 22634330 -180451202 + MLT1J LTR MaLR 5 287 -224 360 337 87 17 chr5 22635317 22635489 -180450043 - MER5A DNA MER1_type 0 189 6 322 320 81 6 chr5 22635897 22636069 -180449463 - MER5A DNA MER1_type -1 188 4 762 157 101 6 chr5 22636087 22636246 -180449286 - MLT1D LTR MaLR -192 313 140 2526 231 26 10 chr5 22636252 22636948 -180448584 + L1ME1 LINE L1 5304 5944 -222 301 316 38 30 chr5 22637022 22637155 -180448377 + L1MB7 LINE L1 6036 6169 -15 1303 238 134 47 chr5 22638214 22638722 -180446810 + MLT1E3 LTR MaLR 72 623 -1 2198 116 0 0 chr5 22639926 22640228 -180445304 + AluSg1 SINE Alu 1 302 -7 197 343 57 0 chr5 22640546 22640616 -180444916 + MER5B DNA MER1_type 1 74 -104 250 269 103 0 chr5 22640957 22641035 -180444497 + MIR SINE MIR 119 204 -58 29 47 0 0 chr5 22641178 22641221 -180444311 + AT_rich Low_complexity Low_complexity 1 43 0 6961 112 7 16 chr5 22642196 22643222 -180442310 + L1PA10 LINE L1 4305 5322 -824 2181 101 7 0 chr5 22643222 22643509 -180442023 + AluSx SINE Alu 7 295 -17 6961 112 7 16 chr5 22643509 22643575 -180441957 + L1PA10 LINE L1 5322 5387 -759 4802 113 10 10 chr5 22643675 22644402 -180441130 + L1PA10 LINE L1 5424 6150 -18 216 380 43 11 chr5 22644806 22644898 -180440634 - MIR SINE MIR -166 96 2 204 209 0 0 chr5 22645515 22645558 -180439974 + L2 LINE L2 3263 3305 -8 2265 151 8 16 chr5 22647113 22647491 -180438041 + THE1C LTR MaLR 1 375 0 225 178 0 0 chr5 22648252 22648297 -180437235 + (TA)n Simple_repeat Simple_repeat 2 46 0 25 0 0 0 chr5 22649915 22649940 -180435592 + AT_rich Low_complexity Low_complexity 1 25 0 381 339 37 37 chr5 22650186 22650375 -180435157 - MER5A DNA MER1_type 0 189 1 253 108 0 0 chr5 22650511 22650548 -180434984 + Tigger3(Golem) DNA MER2_type 2935 2971 -58 1071 127 20 241 chr5 22650554 22650674 -180434858 - Tigger3b DNA MER2_type -1798 1231 1086 2682 68 8 0 chr5 22650674 22651026 -180434506 - THE1A LTR MaLR 0 355 1 1071 127 20 241 chr5 22651026 22651308 -180434224 - Tigger3b DNA MER2_type -1943 1086 918 2196 165 26 29 chr5 22651310 22651728 -180433804 - MSTB LTR MaLR -9 417 1 * 4548 148 72 12 chr5 22651728 22652603 -180432929 - Tigger3b DNA MER2_type -304 927 1 348 214 162 26 chr5 22652604 22652758 -180432774 + L1ME1 LINE L1 4377 4551 -1595 1052 153 61 57 chr5 22652829 22652884 -180432648 - L1MA9 LINE L1 0 6312 6259 3475 216 30 49 chr5 22652884 22653760 -180431772 - MER21B LTR ERV1 -4 859 1 1052 153 61 57 chr5 22653760 22653932 -180431600 - L1MA9 LINE L1 -53 6259 6084 230 200 31 0 chr5 22653944 22654009 -180431523 + L1ME1 LINE L1 4538 4604 -1542 1641 244 45 62 chr5 22654036 22654586 -180430946 + MER77 LTR ERV1 56 596 -9 1313 252 89 21 chr5 22654593 22655021 -180430511 + MLT1C LTR MaLR 9 465 -2 1306 273 73 58 chr5 22655053 22655394 -180430138 + L1ME1 LINE L1 4616 4950 -1216 2040 135 0 3 chr5 22655394 22655690 -180429842 - AluSg SINE Alu -15 295 1 1306 273 73 58 chr5 22655690 22656859 -180428673 + L1ME1 LINE L1 4950 6161 -5 261 128 0 0 chr5 22657538 22657585 -180427947 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 853 160 0 0 chr5 22657716 22657860 -180427672 + Tigger2 DNA MER2_type 2468 2611 -107 2286 97 7 0 chr5 22658036 22658334 -180427198 + AluSc SINE Alu 1 300 -9 280 393 34 15 chr5 22658557 22658822 -180426710 + HERVL LTR ERVL 1379 1648 -4116 532 294 184 21 chr5 22658894 22659176 -180426356 + MLT1G1 LTR MaLR 268 595 0 374 369 29 35 chr5 22659556 22659903 -180425629 + HERVL LTR ERVL 3588 3932 -1722 4154 262 33 39 chr5 22660023 22660076 -180425456 + L1M4 LINE L1 114 166 -6376 1875 160 10 0 chr5 22660076 22660383 -180425149 + AluSx SINE Alu 1 310 -2 4154 262 33 39 chr5 22660383 22661778 -180423754 + L1M4 LINE L1 166 1554 -4988 1669 249 33 22 chr5 22661788 22662428 -180423104 + L1M4 LINE L1 1604 2393 -4432 1482 222 15 3 chr5 22662582 22662916 -180422616 + L1M4 LINE L1 5901 6238 -444 1037 218 30 106 chr5 22662989 22663384 -180422148 + MLT1A1 LTR MaLR 1 365 0 1043 103 0 0 chr5 22663390 22663536 -180421996 + AluSg/x SINE Alu 165 310 -2 434 169 56 0 chr5 22663616 22663713 -180421819 - L1MA9 LINE L1 -9 6282 6176 1559 158 1 110 chr5 22663750 22664176 -180421356 - L1MA9 LINE L1 -726 5586 5203 1692 150 21 67 chr5 22664535 22664862 -180420670 + AluJb SINE Alu 1 312 0 1665 225 49 33 chr5 22666485 22666974 -180418558 - MLT1D LTR MaLR -4 501 5 2068 126 0 13 chr5 22667316 22667633 -180417899 + AluSq SINE Alu 1 313 0 327 213 0 0 chr5 22667638 22667713 -180417819 + GA-rich Low_complexity Low_complexity 3 77 0 22 0 0 0 chr5 22668465 22668487 -180417045 + AT_rich Low_complexity Low_complexity 1 22 0 565 146 0 4 chr5 22668555 22668774 -180416758 + AluSx SINE Alu 1 296 -13 731 280 56 47 chr5 22669075 22669414 -180416118 - LTR16A1 LTR ERVL -60 397 56 358 164 0 0 chr5 22669895 22669950 -180415582 + AluSg/x SINE Alu 210 264 -38 1008 347 53 34 chr5 22670303 22670871 -180414661 - HERV16 LTR ERVL -2640 2356 1778 1487 195 48 7 chr5 22671314 22671606 -180413926 - AluJo SINE Alu -7 305 2 2198 231 155 30 chr5 22671747 22672275 -180413257 + L1MCa LINE L1 1632 2093 -4864 2420 56 3 3 chr5 22672275 22672578 -180412954 + AluY SINE Alu 1 303 -8 2198 231 155 30 chr5 22672578 22672846 -180412686 + L1MCa LINE L1 2093 2326 -4631 1218 121 16 0 chr5 22672846 22673028 -180412504 - L1PA10 LINE L1 -11 6157 5973 2198 231 155 30 chr5 22673028 22673422 -180412110 + L1MCa LINE L1 2326 2972 -3985 1749 280 98 17 chr5 22673429 22674131 -180411401 + L1MCa LINE L1 7 837 -6022 1929 211 44 0 chr5 22674206 22674619 -180410913 - MSTB1 LTR MaLR 0 432 2 1643 162 65 31 chr5 22674634 22674986 -180410546 + THE1B LTR MaLR 1 364 0 11209 98 10 0 chr5 22674986 22676550 -180408982 + THE1B-int LTR MaLR 1 1580 0 2004 146 36 30 chr5 22676550 22676912 -180408620 + THE1B LTR MaLR 1 364 0 653 291 37 3 chr5 22676997 22677323 -180408209 + L1MCa LINE L1 3813 4149 -2808 5310 165 19 4 chr5 22677331 22678445 -180407087 - L1PA16 LINE L1 -1 6165 5034 425 257 0 0 chr5 22678569 22678674 -180406858 + L1MA10 LINE L1 6229 6333 -1 242 306 28 0 chr5 22679195 22679267 -180406265 - MIR SINE MIR -1 261 188 240 143 0 0 chr5 22679290 22679332 -180406200 + (CA)n Simple_repeat Simple_repeat 1 42 0 205 302 209 0 chr5 22679339 22679425 -180406107 - MIR SINE MIR -121 141 38 2455 119 0 11 chr5 22679500 22679878 -180405654 - L1PA13 LINE L1 -2 6161 5788 2134 138 37 11 chr5 22679878 22680233 -180405299 + THE1B LTR MaLR 1 364 0 392 125 78 0 chr5 22680240 22680368 -180405164 + (TA)n Simple_repeat Simple_repeat 1 138 0 1804 127 3 3 chr5 22680393 22680676 -180404856 + L1P4 LINE L1 5312 5594 -569 359 83 17 0 chr5 22681055 22681115 -180404417 + (TTTTA)n Simple_repeat Simple_repeat 2 62 0 3239 26 0 0 chr5 22681115 22681498 -180404034 - L1PA2 LINE L1 -11 6144 5762 585 0 0 0 chr5 22681498 22681566 -180403966 + L1PA2 LINE L1 5709 5776 -379 916 305 124 25 chr5 22681905 22682390 -180403142 - MLT1H1 LTR MaLR -3 552 20 1935 108 14 4 chr5 22682592 22682871 -180402661 - AluSx SINE Alu -20 292 11 239 331 120 42 chr5 22683496 22683638 -180401894 + MIR3 SINE MIR 21 173 -35 33 80 0 0 chr5 22683705 22683780 -180401752 + AT_rich Low_complexity Low_complexity 1 75 0 21 0 0 0 chr5 22684866 22684887 -180400645 + AT_rich Low_complexity Low_complexity 1 21 0 467 272 122 38 chr5 22685578 22685940 -180399592 - L1MC4 LINE L1 -1 8041 7555 272 241 111 19 chr5 22686129 22686237 -180399295 - L1MC5 LINE L1 -574 7387 7270 24 67 0 0 chr5 22686614 22686659 -180398873 + AT_rich Low_complexity Low_complexity 1 45 0 215 235 29 20 chr5 22686671 22686773 -180398759 + (TAA)n Simple_repeat Simple_repeat 1 103 0 22 0 0 0 chr5 22687605 22687627 -180397905 + AT_rich Low_complexity Low_complexity 1 22 0 2790 13 0 0 chr5 22687628 22687939 -180397593 + AluYa5 SINE Alu 1 311 0 977 141 0 6 chr5 22688359 22688529 -180397003 + (GAAA)n Simple_repeat Simple_repeat 1 169 0 492 225 0 0 chr5 22688529 22688658 -180396874 + GA-rich Low_complexity Low_complexity 3 131 0 24 32 0 0 chr5 22689037 22689068 -180396464 + AT_rich Low_complexity Low_complexity 1 31 0 690 265 98 38 chr5 22690602 22690949 -180394583 - L1ME3A LINE L1 0 6170 5803 2262 256 89 19 chr5 22691067 22691975 -180393557 - L1M4 LINE L1 -2613 3533 2539 2290 113 0 0 chr5 22691975 22692284 -180393248 + AluSq SINE Alu 1 309 -4 2262 256 89 19 chr5 22692284 22692436 -180393096 - L1M4 LINE L1 -3607 2539 2399 213 178 0 0 chr5 22692599 22692644 -180392888 + (TG)n Simple_repeat Simple_repeat 2 46 0 1862 228 32 94 chr5 22692658 22692949 -180392583 + L1M4 LINE L1 1046 1354 -5292 1374 217 4 7 chr5 22692949 22693230 -180392302 - AluJo SINE Alu -30 282 3 1862 228 32 94 chr5 22693230 22694024 -180391508 + L1M4 LINE L1 1354 2054 -4592 403 304 39 88 chr5 22694194 22694582 -180390950 + L1M4 LINE L1 2144 2512 -4313 2846 273 69 15 chr5 22694668 22696028 -180389504 + L1M4 LINE L1 2561 3956 -2688 323 179 107 24 chr5 22696049 22696133 -180389399 + MLT1A1 LTR MaLR 1 91 -337 741 188 0 16 chr5 22696159 22696306 -180389226 + MLT1A1 LTR MaLR 229 388 -2 1650 254 37 44 chr5 22696313 22697017 -180388515 + L1M4 LINE L1 3967 4665 -1979 257 208 69 0 chr5 22697055 22697127 -180388405 - LTR67 LTR ERVL 0 557 481 2100 248 29 29 chr5 22697389 22697982 -180387550 + MLT1E LTR MaLR 1 593 0 472 266 66 80 chr5 22698062 22698412 -180387120 + L1MDa LINE L1 2208 2552 -3988 1289 249 126 9 chr5 22699002 22699541 -180385991 - L1MC4 LINE L1 -375 7667 7066 485 255 141 47 chr5 22699557 22699855 -180385677 - L1MC4 LINE L1 -1205 6837 6512 1927 119 92 9 chr5 22700380 22700708 -180384824 + THE1A LTR MaLR 1 355 0 944 267 73 25 chr5 22702576 22702946 -180382586 + MLT1D LTR MaLR 120 505 0 274 319 57 25 chr5 22703182 22703339 -180382193 + MIR SINE MIR 72 233 -29 25 0 0 0 chr5 22703636 22703661 -180381871 + AT_rich Low_complexity Low_complexity 1 25 0 227 285 65 32 chr5 22704566 22704689 -180380843 + MER65A LTR ERV1 2 128 -317 559 299 134 0 chr5 22705433 22705657 -180379875 + LTR16C LTR ERVL 236 489 -2 1907 149 30 0 chr5 22705911 22706212 -180379320 - AluSq SINE Alu -1 312 3 1807 162 53 48 chr5 22706538 22706737 -180378795 + L1PA16 LINE L1 5779 5982 -184 1240 207 88 14 chr5 22706737 22707022 -180378510 + AluJo SINE Alu 1 306 -6 1807 162 53 48 chr5 22707022 22707198 -180378334 + L1PA16 LINE L1 5982 6156 -10 262 298 0 53 chr5 22708036 22708130 -180377402 - MIR SINE MIR -10 252 164 614 309 40 28 chr5 22708132 22708384 -180377148 + MIR SINE MIR 2 256 -6 268 292 108 31 chr5 22708937 22709067 -180376465 + MIR SINE MIR 74 213 -49 258 281 85 0 chr5 22709199 22709281 -180376251 - MER117 DNA MER1_type -1 196 108 240 299 134 8 chr5 22709529 22709656 -180375876 - MIR SINE MIR -70 192 50 379 43 0 0 chr5 22710115 22710161 -180375371 + MSTA LTR MaLR 1 46 -382 2994 138 58 48 chr5 22710161 22710763 -180374769 - MER4B LTR ERV1 0 610 3 1533 145 4 8 chr5 22710765 22711007 -180374525 - MER4B-int LTR ERV1 0 6758 6518 4557 111 3 44 chr5 22711008 22711731 -180373801 + L1PA7 LINE L1 1 693 -5768 * 6488 92 10 10 chr5 22711728 22714855 -180370677 + L1PA7 LINE L1 3263 6463 -6 9472 153 69 13 chr5 22714856 22716788 -180368744 - MER4B-int LTR ERV1 -227 6531 4452 2892 162 42 4 chr5 22716787 22717250 -180368282 - MER4B-int LTR ERV1 -2670 4088 3540 * 306 0 0 0 chr5 22717250 22717284 -180368248 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2892 162 42 4 chr5 22717284 22717407 -180368125 - MER4B-int LTR ERV1 -3218 3540 3423 * 5096 197 81 51 chr5 22717402 22719687 -180365845 - MER4B-int LTR ERV1 -3012 3586 1804 1394 106 59 51 chr5 22719704 22719977 -180365555 - MER4B-int LTR ERV1 -5331 1267 993 253 156 0 44 chr5 22719997 22720042 -180365490 - LTR49 LTR ERV1 -282 313 271 259 169 0 130 chr5 22720042 22720119 -180365413 - MER4B-int LTR ERV1 -5845 753 687 329 177 0 0 chr5 22720135 22720197 -180365335 - MER4B-int LTR ERV1 -5786 812 751 2981 129 143 29 chr5 22720523 22720582 -180364950 - MER4B-int LTR ERV1 -5906 692 641 204 40 0 0 chr5 22720582 22720607 -180364925 + (CA)n Simple_repeat Simple_repeat 2 26 0 2981 129 143 29 chr5 22720607 22721168 -180364364 - MER4B-int LTR ERV1 -5957 641 1 2929 154 57 45 chr5 22721173 22721775 -180363757 - MER4B LTR ERV1 -1 609 1 1606 163 142 23 chr5 22721775 22722119 -180363413 + MSTA LTR MaLR 43 427 -1 2893 63 0 0 chr5 22722235 22722600 -180362932 - L1PA7 LINE L1 -14 6140 5776 2898 261 39 23 chr5 22722900 22723690 -180361842 - MER21B LTR ERV1 -60 803 1 273 324 0 0 chr5 22723691 22723762 -180361770 + LTR16A LTR ERVL 380 450 0 1356 117 40 22 chr5 22723842 22723949 -180361583 - AluSg/x SINE Alu 0 312 208 5202 90 41 9 chr5 22723949 22724705 -180360827 + LTR17 LTR ERV1 1 780 0 1356 117 40 22 chr5 22724705 22724820 -180360712 - AluSg/x SINE Alu -104 208 86 221 258 0 0 chr5 22724878 22724940 -180360592 + A-rich Low_complexity Low_complexity 1 62 0 581 300 107 21 chr5 22725271 22725644 -180359888 - LTR38 LTR ERV1 -11 545 141 278 248 85 35 chr5 22725614 22725755 -180359777 - LTR36 LTR ERV1 -416 195 48 * 875 10 0 0 chr5 22725756 22725856 -180359676 - L1PA4 LINE L1 -258 5897 5798 207 0 0 0 chr5 22726043 22726066 -180359466 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 631 234 27 11 chr5 22726188 22726376 -180359156 + MER83B-int LTR ERV1 3168 3358 -1522 495 143 0 120 chr5 22726364 22726497 -180359035 - LOR1-int LTR ERV1 -3644 4476 4360 * 468 245 83 52 chr5 22726509 22726778 -180358754 + LTR56 LTR ERV1 191 437 0 1240 203 14 31 chr5 22726825 22727002 -180358530 - L1 LINE L1 -2625 3521 3351 4649 94 23 6 chr5 22727002 22727651 -180357881 + PABL_A LTR ERV1 1 660 0 1240 203 14 31 chr5 22727651 22727822 -180357710 - L1 LINE L1 -2795 3351 3179 2452 141 32 2 chr5 22727829 22728324 -180357208 + L1PB1 LINE L1 5698 6205 0 681 218 0 0 chr5 22728632 22728831 -180356701 + FLAM_C SINE Alu 1 199 0 378 181 8 126 chr5 22729772 22729811 -180355721 + L1M4 LINE L1 4448 4490 -1656 1861 143 25 3 chr5 22729811 22730097 -180355435 - AluSx SINE Alu -20 292 1 378 181 8 126 chr5 22730097 22730184 -180355348 + L1M4 LINE L1 4490 4559 -1587 198 103 0 0 chr5 22730184 22730213 -180355319 + (CA)n Simple_repeat Simple_repeat 2 30 0 738 214 50 23 chr5 22730215 22730431 -180355101 - L1MC4a LINE L1 -1155 6630 6401 475 251 92 26 chr5 22730443 22730638 -180354894 + L2 LINE L2 2695 2902 -412 572 280 30 6 chr5 22730638 22730806 -180354726 + L1ME1 LINE L1 5975 6146 -20 1393 155 24 40 chr5 22730914 22731166 -180354366 + AluJo SINE Alu 33 280 -32 429 189 89 0 chr5 22731920 22732052 -180353480 - FLAM_A SINE Alu 0 160 21 1926 152 0 20 chr5 22732255 22732558 -180352974 + AluSx SINE Alu 3 299 -13 274 286 134 36 chr5 22733100 22733324 -180352208 + MIR SINE MIR 7 252 -10 1712 168 3 14 chr5 22733356 22733653 -180351879 - AluJb SINE Alu -18 294 1 198 296 19 0 chr5 22734048 22734102 -180351430 + L2 LINE L2 3203 3257 -15 2385 116 8 30 chr5 22734597 22734969 -180350563 + THE1B LTR MaLR 1 364 0 363 350 51 47 chr5 22736064 22736278 -180349254 + L2 LINE L2 2646 2860 -454 826 130 20 175 chr5 22736412 22736658 -180348874 + MER2 DNA MER2_type 2 209 -136 235 401 20 7 chr5 22736884 22737031 -180348501 + L2 LINE L2 3122 3270 -2 190 169 0 26 chr5 22737576 22737653 -180347879 + (TA)n Simple_repeat Simple_repeat 1 75 0 267 325 97 26 chr5 22738403 22738557 -180346975 - MER5B DNA MER1_type -6 172 8 366 299 56 0 chr5 22738566 22738673 -180346859 - MIR3 SINE MIR -50 158 46 288 111 0 0 chr5 22739842 22739887 -180345645 + (CA)n Simple_repeat Simple_repeat 2 46 0 193 204 130 0 chr5 22740372 22740426 -180345106 + MIR3 SINE MIR 123 183 -25 1866 182 23 11 chr5 22741276 22741627 -180343905 + MLT1A1 LTR MaLR 11 365 0 1887 201 28 25 chr5 22741755 22742188 -180343344 + MER101 LTR ERV1 11 444 -30 2079 92 0 34 chr5 22742411 22742564 -180342968 - AluSc SINE Alu -27 282 125 441 0 0 0 chr5 22742564 22742613 -180342919 + (TG)n Simple_repeat Simple_repeat 2 50 0 2394 67 0 0 chr5 22742615 22742912 -180342620 - AluY SINE Alu -14 297 1 2079 92 0 34 chr5 22742912 22743047 -180342485 - AluSc SINE Alu -185 124 1 182 286 44 55 chr5 22743991 22744082 -180341450 - MER5B DNA MER1_type -85 93 4 988 106 0 0 chr5 22744088 22744220 -180341312 + AluSg/x SINE Alu 165 296 -16 307 275 33 33 chr5 22744872 22744992 -180340540 - L2 LINE L2 -323 2990 2871 391 232 66 137 chr5 22746102 22746343 -180339189 - MER21B LTR ERV1 -27 836 613 2178 141 113 13 chr5 22746349 22746608 -180338924 - MSTA LTR MaLR 0 428 116 1969 143 71 31 chr5 22746608 22746958 -180338574 + THE1B LTR MaLR 1 364 0 2178 141 113 13 chr5 22746958 22747087 -180338445 - MSTA LTR MaLR -312 116 1 2120 269 6 8 chr5 22747110 22747605 -180337927 - MER21B LTR ERV1 -270 593 100 319 301 176 7 chr5 22748578 22748714 -180336818 - MIR SINE MIR -56 206 48 1913 107 0 11 chr5 22748816 22749077 -180336455 + AluSq SINE Alu 2 259 -54 187 361 126 8 chr5 22749317 22749436 -180336096 - L2 LINE L2 -4 3268 3136 208 200 0 40 chr5 22749474 22749524 -180336008 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 252 361 12 0 chr5 22750560 22750643 -180334889 - L2 LINE L2 -633 2681 2598 639 228 32 6 chr5 22750657 22750807 -180334725 - MLT1A1 LTR MaLR 0 365 228 848 288 66 35 chr5 22750816 22751112 -180334420 + Charlie7 DNA MER1_type 885 1199 -1413 958 55 40 0 chr5 22751112 22751312 -180334220 + (TCTA)n Simple_repeat Simple_repeat 1 208 0 848 288 66 35 chr5 22751312 22751409 -180334123 + Charlie7 DNA MER1_type 1199 1292 -1320 25 65 0 0 chr5 22751421 22751467 -180334065 + AT_rich Low_complexity Low_complexity 1 46 0 280 247 0 14 chr5 22752117 22752190 -180333342 + CT-rich Low_complexity Low_complexity 2 73 0 1787 221 89 7 chr5 22752302 22752749 -180332783 + MLT1D LTR MaLR 21 504 -1 274 265 162 29 chr5 22752941 22753077 -180332455 + L2 LINE L2 3159 3312 -1 746 235 6 0 chr5 22753250 22753412 -180332120 + FRAM SINE Alu 1 163 -3 204 39 0 118 chr5 22754255 22754306 -180331226 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 227 371 88 24 chr5 22754614 22754943 -180330589 - L2 LINE L2 -524 2790 2441 1963 85 72 17 chr5 22754992 22755285 -180330247 + AluY SINE Alu 1 309 -2 25 83 0 0 chr5 22755450 22755510 -180330022 + AT_rich Low_complexity Low_complexity 1 60 0 21 36 0 0 chr5 22756074 22756102 -180329430 + AT_rich Low_complexity Low_complexity 1 28 0 1804 258 41 15 chr5 22757554 22757967 -180327565 - MLT1D LTR MaLR -2 503 75 745 228 147 54 chr5 22757967 22758301 -180327231 - MLT1A1 LTR MaLR 0 365 1 1804 258 41 15 chr5 22758301 22758353 -180327179 - MLT1D LTR MaLR -430 75 26 10074 31 1 2 chr5 22758730 22759981 -180325551 - L1P LINE L1 -779 5377 4126 6760 20 23 0 chr5 22759981 22760769 -180324763 + L1PA3 LINE L1 5340 6155 0 2620 52 0 0 chr5 22761398 22761708 -180323824 + AluY SINE Alu 1 310 -1 2178 84 10 13 chr5 22762096 22762395 -180323137 + AluSp SINE Alu 16 313 0 2077 116 7 3 chr5 22762409 22762719 -180322813 + AluSx SINE Alu 1 311 -1 436 228 89 13 chr5 22766089 22766247 -180319285 + MER3 DNA MER1_type 1 123 -86 1203 104 42 10 chr5 22766263 22766455 -180319077 + Tigger1 DNA MER2_type 2081 2278 -140 213 267 0 27 chr5 22766455 22766530 -180319002 + (TA)n Simple_repeat Simple_repeat 1 73 0 13125 147 29 28 chr5 22766530 22768945 -180316587 - Tigger1 DNA MER2_type 0 2418 1 482 218 158 57 chr5 22769731 22770080 -180315452 - L1MC5 LINE L1 -60 7901 7518 5033 251 35 70 chr5 22770108 22772420 -180313112 + L1MB5 LINE L1 2935 5165 -981 1339 215 91 14 chr5 22772442 22772795 -180312737 - MLT1B LTR MaLR 0 390 11 3296 192 89 25 chr5 22772798 22773719 -180311813 + L1MB5 LINE L1 5184 6166 -8 258 322 0 11 chr5 22774405 22774495 -180311037 - MLT1J LTR MaLR -299 212 124 318 235 61 10 chr5 22775964 22776062 -180309470 - MLT1J LTR MaLR -14 497 395 253 322 142 27 chr5 22776213 22776396 -180309136 - MLT1J LTR MaLR -303 208 5 2228 253 68 15 chr5 22777139 22777923 -180307609 - MER99 DNA DNA -1 827 3 1687 148 50 4 chr5 22779240 22779518 -180306014 - AluSx SINE Alu -21 291 1 28 0 0 0 chr5 22779693 22779721 -180305811 + AT_rich Low_complexity Low_complexity 1 28 0 280 333 0 0 chr5 22780564 22780666 -180304866 + CT-rich Low_complexity Low_complexity 2 103 0 25 31 0 0 chr5 22781302 22781334 -180304198 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chr5 22781499 22781531 -180304001 + AT_rich Low_complexity Low_complexity 1 32 0 357 313 19 19 chr5 22781769 22781929 -180303603 + LTR1B LTR ERV1 39 198 -628 588 222 54 36 chr5 22782028 22782195 -180303337 + LTR28 LTR ERV1 405 574 -446 252 235 50 76 chr5 22782280 22782399 -180303133 + LTR28 LTR ERV1 905 1020 0 241 188 25 25 chr5 22782445 22782525 -180303007 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 758 282 55 42 chr5 22783545 22784003 -180301529 - L1MCa LINE L1 -5102 1324 861 509 298 105 41 chr5 22783999 22784563 -180300969 + L1M4 LINE L1 2968 3567 -2579 * 497 260 25 55 chr5 22784733 22784933 -180300599 + LTR4 LTR ERV1 7 200 -396 596 232 53 68 chr5 22785137 22785400 -180300132 + LTR4 LTR ERV1 331 589 -7 1930 259 99 34 chr5 22785582 22785751 -180299781 + L1M4 LINE L1 4111 4268 -1878 2313 74 16 22 chr5 22785751 22786063 -180299469 + AluY SINE Alu 1 310 -1 1930 259 99 34 chr5 22786063 22786876 -180298656 + L1M4 LINE L1 4268 5157 -989 1877 77 4 0 chr5 22788936 22789184 -180296348 - L1PA6 LINE L1 -4 6150 5902 27 0 0 0 chr5 22789516 22789543 -180295989 + AT_rich Low_complexity Low_complexity 1 27 0 393 256 20 94 chr5 22791414 22791617 -180293915 + LTR41 LTR ERVL 575 762 -11 1476 219 92 16 chr5 22793002 22793436 -180292096 + MLT1C LTR MaLR 1 467 0 351 0 0 0 chr5 22793497 22793536 -180291996 + (CA)n Simple_repeat Simple_repeat 1 39 0 27 29 0 0 chr5 22794094 22794128 -180291404 + AT_rich Low_complexity Low_complexity 1 34 0 21 23 0 47 chr5 22794700 22794720 -180290812 + AT_rich Low_complexity Low_complexity 1 20 -21 1543 184 0 4 chr5 22794720 22794987 -180290545 - AluJo SINE Alu -26 286 21 21 23 0 47 chr5 22794987 22795009 -180290523 + AT_rich Low_complexity Low_complexity 20 41 0 336 379 51 27 chr5 22795085 22795378 -180290154 - L2 LINE L2 0 3313 3014 537 210 0 16 chr5 22796292 22796416 -180289116 + L1MA8 LINE L1 6164 6285 -6 3599 115 46 7 chr5 22796710 22797414 -180288118 + L1PA12 LINE L1 5097 5834 -334 3373 99 16 4 chr5 22797414 22797908 -180287624 + L1PA13 LINE L1 5660 6159 -4 23 0 0 0 chr5 22797932 22797955 -180287577 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr5 22797992 22798020 -180287512 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr5 22798489 22798528 -180287004 + AT_rich Low_complexity Low_complexity 1 39 0 258 362 68 34 chr5 22799242 22799449 -180286083 - MIR SINE MIR -24 238 25 12291 193 54 29 chr5 22800465 22800977 -180284555 - L1MA8 LINE L1 -10 7302 6804 342 0 0 0 chr5 22800977 22801015 -180284517 + (TG)n Simple_repeat Simple_repeat 2 39 0 12291 193 54 29 chr5 22801015 22803660 -180281872 - L1MA8 LINE L1 -508 6804 4012 1942 154 0 0 chr5 22803660 22803958 -180281574 - AluSx SINE Alu -14 298 1 12291 193 54 29 chr5 22803958 22804795 -180280737 - L1MA8 LINE L1 -3300 4012 3197 2527 281 77 23 chr5 22804803 22805995 -180279537 - L1MA8 LINE L1 -4174 2994 1753 273 175 16 0 chr5 22807043 22807106 -180278426 + L1MC4 LINE L1 6640 6703 -1339 207 0 0 0 chr5 22807608 22807631 -180277901 + (A)n Simple_repeat Simple_repeat 1 23 0 1325 162 40 166 chr5 22807664 22807881 -180277651 - MSTD LTR MaLR 0 396 264 1903 119 3 44 chr5 22807881 22808200 -180277332 - AluSq SINE Alu -7 306 1 1325 162 40 166 chr5 22808200 22808433 -180277099 - MSTD LTR MaLR -132 264 3 29 0 0 0 chr5 22809280 22809309 -180276223 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr5 22809695 22809722 -180275810 + AT_rich Low_complexity Low_complexity 1 27 0 2064 108 0 0 chr5 22809940 22810226 -180275306 + AluSx SINE Alu 1 286 -26 23 0 0 0 chr5 22810226 22810249 -180275283 + AT_rich Low_complexity Low_complexity 1 23 0 31 58 0 0 chr5 22810406 22810458 -180275074 + AT_rich Low_complexity Low_complexity 1 52 0 26 50 0 0 chr5 22810664 22810704 -180274828 + AT_rich Low_complexity Low_complexity 1 40 0 449 328 74 55 chr5 22810876 22811242 -180274290 - L2 LINE L2 -14 3299 2927 21 0 0 0 chr5 22811932 22811953 -180273579 + AT_rich Low_complexity Low_complexity 1 21 0 2341 62 3 3 chr5 22812020 22812347 -180273185 - AluY SINE Alu 0 311 1 932 218 166 6 chr5 22812486 22812885 -180272647 - MLT2B1 LTR ERVL 0 515 1 25 0 0 0 chr5 22814009 22814034 -180271498 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr5 22815027 22815069 -180270463 + AT_rich Low_complexity Low_complexity 1 42 0 405 0 0 0 chr5 22815355 22815400 -180270132 + (TG)n Simple_repeat Simple_repeat 2 46 0 364 256 22 6 chr5 22816928 22817053 -180268479 + MLT1J2 LTR MaLR 78 201 -208 23 68 0 0 chr5 22817158 22817202 -180268330 + AT_rich Low_complexity Low_complexity 1 44 0 718 219 5 23 chr5 22817270 22817485 -180268047 - L1MA4 LINE L1 -3 6297 6087 704 245 39 10 chr5 22817485 22817689 -180267843 + MLT1A1 LTR MaLR 145 354 -11 2188 238 72 30 chr5 22817700 22818459 -180267073 + MLT1A1-int LTR MaLR 1 883 -488 1965 196 25 20 chr5 22818809 22819217 -180266315 + MLT1A1-int LTR MaLR 1326 1735 0 1343 234 33 17 chr5 22819217 22819576 -180265956 + MLT1A1 LTR MaLR 1 365 0 694 171 53 35 chr5 22819799 22819969 -180265563 - L1MA7 LINE L1 0 6291 6119 * 831 202 26 16 chr5 22819966 22820159 -180265373 + L1MA7 LINE L1 5931 6125 -166 24 32 0 0 chr5 22821586 22821617 -180263915 + AT_rich Low_complexity Low_complexity 1 31 0 817 233 11 0 chr5 22821781 22821957 -180263575 + MSTD LTR MaLR 219 396 0 1184 164 36 87 chr5 22821972 22822307 -180263225 - L1PB4 LINE L1 -301 5855 5538 * 2328 199 12 52 chr5 22822300 22823153 -180262379 + L1PB4 LINE L1 4731 5543 -613 22 94 0 0 chr5 22823155 22823219 -180262313 + AT_rich Low_complexity Low_complexity 1 64 0 2420 108 11 19 chr5 22823564 22823942 -180261590 + THE1C LTR MaLR 1 375 0 4262 215 45 12 chr5 22823952 22824959 -180260573 - L1PB4 LINE L1 -725 5429 4376 360 0 0 0 chr5 22824959 22824999 -180260533 + (TG)n Simple_repeat Simple_repeat 1 40 0 4262 215 45 12 chr5 22824999 22825199 -180260333 - L1PB4 LINE L1 -1778 4376 4184 257 92 123 77 chr5 22825343 22825408 -180260124 - L1ME LINE L1 -304 5862 5795 245 348 104 0 chr5 22825759 22825923 -180259609 - L2 LINE L2 -2 3311 3131 262 347 100 44 chr5 22826083 22826354 -180259178 - L2 LINE L2 -437 2877 2592 207 316 79 40 chr5 22826389 22826541 -180258991 - L2 LINE L2 -802 2512 2355 718 233 0 28 chr5 22929311 22929491 -180156041 - FRAM SINE Alu -1 175 1 2227 64 4 0 chr5 22929524 22929839 -180155693 + AluY SINE Alu 1 316 0 231 200 0 0 chr5 22931353 22931398 -180154134 + GA-rich Low_complexity Low_complexity 1 45 0 226 288 75 12 chr5 22932055 22932135 -180153397 + L2 LINE L2 3188 3272 0 372 289 7 27 chr5 22933189 22933338 -180152194 + MER113 DNA MER1_type? 225 370 -151 235 149 21 0 chr5 22933386 22933433 -180152099 - LTR66 LTR ERVL -171 439 392 200 184 0 0 chr5 22933433 22933471 -180152061 + CT-rich Low_complexity Low_complexity 1 38 0 337 270 214 8 chr5 22933483 22933609 -180151923 + MER5A DNA MER1_type 9 160 -29 354 213 0 43 chr5 22933624 22933718 -180151814 + MER113 DNA MER1_type? 358 447 -74 655 229 77 11 chr5 22933730 22933913 -180151619 + MER3 DNA MER1_type 10 204 -5 721 307 81 81 chr5 22934159 22934826 -180150706 + HAL1 LINE L1 25 691 -1816 769 289 140 65 chr5 22934841 22935589 -180149943 + HAL1 LINE L1 1080 1924 -583 1550 179 13 47 chr5 22935589 22935907 -180149625 + AluJo SINE Alu 6 312 0 769 289 140 65 chr5 22935907 22936166 -180149366 + HAL1 LINE L1 1924 2162 -345 276 287 89 20 chr5 22936458 22936559 -180148973 - L2 LINE L2 -13 3300 3193 438 329 109 40 chr5 22936711 22937088 -180148444 + L2 LINE L2 2910 3312 -1 21 36 0 0 chr5 22937196 22937224 -180148308 + AT_rich Low_complexity Low_complexity 1 28 0 749 152 0 35 chr5 22937924 22938069 -180147463 - FLAM_C SINE Alu -1 142 3 283 286 134 0 chr5 22938948 22939067 -180146465 + MIR SINE MIR 108 242 -20 21 0 0 0 chr5 22940011 22940032 -180145500 + AT_rich Low_complexity Low_complexity 1 21 0 750 305 65 21 chr5 22941277 22941615 -180143917 - MLT1K LTR MaLR 0 588 236 238 244 233 0 chr5 22943724 22943814 -180141718 + MER5B DNA MER1_type 1 111 -67 1606 135 42 45 chr5 22943814 22943935 -180141597 - MER39B LTR ERV1 -366 287 167 1963 163 0 0 chr5 22943935 22944235 -180141297 - AluSx SINE Alu -10 302 3 1606 135 42 45 chr5 22944235 22944401 -180141131 - MER39B LTR ERV1 -486 167 1 32 75 0 0 chr5 22944659 22944726 -180140806 + AT_rich Low_complexity Low_complexity 1 67 0 1488 192 10 30 chr5 22944781 22945078 -180140454 - AluJb SINE Alu -21 291 1 251 154 0 19 chr5 22945551 22945603 -180139929 + (CATA)n Simple_repeat Simple_repeat 3 53 0 1759 178 51 3 chr5 22945625 22945957 -180139575 - MLT2C1 LTR ERVL -49 348 1 387 0 0 0 chr5 22946917 22946960 -180138572 + (TG)n Simple_repeat Simple_repeat 2 44 0 373 264 160 0 chr5 22948337 22948481 -180137051 - MER5B DNA MER1_type 0 178 12 819 234 72 10 chr5 22948865 22949155 -180136377 + LTR37A LTR ERV1 115 422 -4 2103 123 35 30 chr5 22949500 22949873 -180135659 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr5 22950400 22950435 -180135097 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr5 22950843 22950864 -180134668 + AT_rich Low_complexity Low_complexity 1 21 0 308 221 59 73 chr5 22951226 22951362 -180134170 - L2 LINE L2 0 3313 3180 2008 78 25 3 chr5 22951483 22951816 -180133716 + L1PA7 LINE L1 5848 6186 0 225 169 0 0 chr5 22954058 22954117 -180131415 + (TA)n Simple_repeat Simple_repeat 2 60 0 285 383 17 0 chr5 22954319 22954439 -180131093 - L3 LINE CR1 -4 1573 1452 1944 111 44 0 chr5 22955377 22955687 -180129845 + AluSq SINE Alu 1 322 0 212 210 0 32 chr5 22956143 22956205 -180129327 + A-rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr5 22956671 22956693 -180128839 + AT_rich Low_complexity Low_complexity 1 22 0 1881 293 161 56 chr5 22957794 22958428 -180127104 - L2 LINE L2 -1680 1634 1068 1894 139 10 26 chr5 22958428 22958738 -180126794 + AluSx SINE Alu 1 305 -7 1881 293 161 56 chr5 22958738 22958913 -180126619 - L2 LINE L2 -2246 1068 913 2252 90 0 10 chr5 22958913 22959214 -180126318 + AluY SINE Alu 1 298 -13 1881 293 161 56 chr5 22959214 22959712 -180125820 - L2 LINE L2 -2401 913 188 2885 101 10 2 chr5 22960266 22960661 -180124871 - MER1A DNA MER1_type 0 529 132 1784 137 7 11 chr5 22960665 22960943 -180124589 - AluJb SINE Alu -34 278 2 218 284 84 0 chr5 22961646 22961741 -180123791 + MIR SINE MIR 160 262 0 218 344 21 21 chr5 22961755 22961851 -180123681 + MIR3 SINE MIR 60 155 -53 198 0 0 0 chr5 22963711 22963733 -180121799 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 275 133 0 4 chr5 22963744 22963948 -180121584 + AluSc SINE Alu 1 289 -10 23 0 0 0 chr5 22964319 22964342 -180121190 + AT_rich Low_complexity Low_complexity 1 23 0 285 51 0 0 chr5 22965231 22965270 -180120262 + (CA)n Simple_repeat Simple_repeat 2 40 0 1164 128 37 11 chr5 22965276 22965464 -180120068 + MSTA LTR MaLR 6 198 -230 241 323 65 0 chr5 22965516 22965640 -180119892 + L1MC/D LINE L1 5742 5873 -1935 208 281 0 0 chr5 22965737 22965794 -180119738 + (TG)n Simple_repeat Simple_repeat 2 58 0 214 237 0 0 chr5 22965864 22965902 -180119630 + polypyrimidine Low_complexity Low_complexity 5 42 0 2303 88 0 0 chr5 22965906 22966211 -180119321 - AluY SINE Alu -6 305 1 185 156 0 22 chr5 22966228 22966273 -180119259 + CT-rich Low_complexity Low_complexity 2 45 0 27 62 0 0 chr5 22966391 22966439 -180119093 + AT_rich Low_complexity Low_complexity 1 48 0 5275 117 25 5 chr5 22966584 22967420 -180118112 - L1MA3 LINE L1 0 6305 5453 244 370 19 9 chr5 22967538 22967646 -180117886 - L2 LINE L2 -6 3307 3199 1603 169 41 41 chr5 22967791 22968153 -180117379 + THE1B LTR MaLR 1 362 -2 1430 228 206 21 chr5 22968762 22969341 -180116191 + MER76 LTR ERV 1 686 -2 235 343 56 49 chr5 22969463 22969747 -180115785 - L2 LINE L2 -86 3227 2941 374 43 58 0 chr5 22969806 22969875 -180115657 + (TA)n Simple_repeat Simple_repeat 1 73 0 277 320 34 7 chr5 22970086 22970233 -180115299 + L1ME LINE L1 5669 5819 -302 22 35 0 0 chr5 22970342 22970371 -180115161 + AT_rich Low_complexity Low_complexity 1 29 0 1745 158 61 0 chr5 22971064 22971184 -180114348 + AluSx SINE Alu 1 112 -200 183 42 0 0 chr5 22971184 22971208 -180114324 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1745 158 61 0 chr5 22971208 22971366 -180114166 + AluSx SINE Alu 112 296 -16 252 130 0 0 chr5 22971939 22971985 -180113547 + (TC)n Simple_repeat Simple_repeat 1 46 0 1033 222 46 24 chr5 22973020 22973459 -180112073 + MLT1D LTR MaLR 1 505 0 369 0 0 0 chr5 22973473 22973514 -180112018 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 95 0 0 chr5 22973586 22973649 -180111883 + AT_rich Low_complexity Low_complexity 1 63 0 186 275 0 0 chr5 22973705 22973785 -180111747 + (TATATG)n Simple_repeat Simple_repeat 4 83 0 2011 128 52 30 chr5 22974008 22974375 -180111157 + THE1C LTR MaLR 1 375 0 450 252 17 8 chr5 22974902 22975021 -180110511 - MER45A DNA AcHobo 0 178 59 242 265 48 12 chr5 22975179 22975262 -180110270 - MIR3 SINE MIR -9 199 114 23 0 0 0 chr5 22975651 22975674 -180109858 + AT_rich Low_complexity Low_complexity 1 23 0 2541 258 80 34 chr5 22976137 22976266 -180109266 + L1MDa LINE L1 1023 1145 -5395 2211 122 6 3 chr5 22976266 22976577 -180108955 + AluSx SINE Alu 1 312 0 2541 258 80 34 chr5 22976577 22977726 -180107806 + L1MDa LINE L1 1145 2360 -4180 1221 189 31 22 chr5 22977743 22977970 -180107562 + Tigger3b DNA MER2_type 1 229 -1002 1977 156 30 24 chr5 22977970 22978341 -180107191 + THE1C LTR MaLR 1 373 -2 6819 141 33 19 chr5 22978343 22979842 -180105690 + THE1C-int LTR MaLR 1 1580 0 2084 166 11 21 chr5 22979842 22980221 -180105311 + THE1C LTR MaLR 1 375 0 4815 165 41 17 chr5 22980221 22980338 -180105194 + Tigger3b DNA MER2_type 225 338 -2690 2153 58 0 0 chr5 22980338 22980595 -180104937 + AluY SINE Alu 47 303 -8 4815 165 41 17 chr5 22980595 22981455 -180104077 + Tigger3b DNA MER2_type 338 1225 -6 727 199 60 5 chr5 22981461 22981677 -180103855 + L1MDa LINE L1 2379 2606 -3934 23 0 0 0 chr5 22981734 22981757 -180103775 + AT_rich Low_complexity Low_complexity 1 23 0 2192 91 0 7 chr5 22981876 22982210 -180103322 - AluY SINE Alu 0 332 1 189 0 0 0 chr5 22982368 22982389 -180103143 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1524 118 93 89 chr5 22982391 22982671 -180102861 - AluSx SINE Alu -31 281 1 259 326 96 7 chr5 22983113 22983248 -180102284 + MIR SINE MIR 13 159 -103 2673 204 72 54 chr5 22983857 22984617 -180100915 + MER4E LTR ERV1 1 774 -5 243 323 120 15 chr5 22986240 22986373 -180099159 - MIR SINE MIR -56 206 60 22 88 0 0 chr5 22986396 22986453 -180099079 + AT_rich Low_complexity Low_complexity 1 57 0 542 323 72 43 chr5 22987013 22987431 -180098101 + L1MEd LINE L1 668 1097 -5022 28 0 0 0 chr5 22987835 22987863 -180097669 + AT_rich Low_complexity Low_complexity 1 28 0 6357 174 11 14 chr5 22988036 22989054 -180096478 - L1PA14 LINE L1 0 6161 5141 2078 120 38 27 chr5 22989054 22989422 -180096110 + THE1C LTR MaLR 1 372 -3 6357 174 11 14 chr5 22989422 22990480 -180095052 - L1PA14 LINE L1 -1020 5141 4088 2983 187 20 16 chr5 22990480 22990751 -180094781 + L1P LINE L1 2121 2390 -3756 2190 88 0 57 chr5 22990751 22991069 -180094463 + AluSc SINE Alu 1 300 -9 2983 187 20 16 chr5 22991069 22991407 -180094125 + L1P LINE L1 2390 2732 -3414 243 88 0 0 chr5 22991824 22991858 -180093674 + (CA)n Simple_repeat Simple_repeat 2 35 0 316 297 42 0 chr5 22991915 22992033 -180093499 - L1ME2 LINE L1 -16 6148 6026 928 260 35 22 chr5 22992039 22992405 -180093127 - L1MEc LINE L1 -3373 3009 2639 353 278 52 48 chr5 22992434 22992597 -180092935 - L1MEc LINE L1 -3959 2604 2438 1474 202 33 50 chr5 22992597 22992993 -180092539 + MLT1B LTR MaLR 2 390 0 353 278 52 48 chr5 22992993 22993077 -180092455 - L1MEc LINE L1 -4125 2438 2356 292 333 62 24 chr5 22993222 22993591 -180091941 - L1MEc LINE L1 -4899 1381 999 339 309 13 34 chr5 22993616 22993765 -180091767 - L1MEc LINE L1 -5477 1086 941 344 39 0 20 chr5 22994217 22994268 -180091264 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 688 225 0 12 chr5 22994270 22994430 -180091102 - L1PA16 LINE L1 -10 6156 5999 427 154 26 0 chr5 22994435 22994513 -180091019 + L1P LINE L1 5141 5220 -926 29 0 0 0 chr5 22995688 22995717 -180089815 + AT_rich Low_complexity Low_complexity 1 29 0 186 171 0 0 chr5 22997263 22997304 -180088228 + T-rich Low_complexity Low_complexity 1 41 0 877 219 128 0 chr5 22997410 22997606 -180087926 - MER58A DNA MER1_type -3 221 1 374 278 46 9 chr5 22997613 22997721 -180087811 + L2 LINE L2 3188 3299 -14 338 346 81 11 chr5 22999351 22999536 -180085996 - MIR SINE MIR -13 249 52 431 319 78 71 chr5 22999638 22999871 -180085661 + MLT1F-int LTR MaLR 961 1200 -171 2777 103 2 7 chr5 22999871 23000279 -180085253 + L1PA10 LINE L1 5763 6168 0 431 319 78 71 chr5 23000279 23000453 -180085079 + MLT1F-int LTR MaLR 1200 1371 0 548 237 135 70 chr5 23000454 23000815 -180084717 + MLT1F LTR MaLR 2 443 -99 1417 277 36 11 chr5 23000890 23001360 -180084172 + L1MC4 LINE L1 7350 7831 -211 2112 151 0 0 chr5 23001681 23001993 -180083539 + AluSx SINE Alu 1 312 0 21 0 0 0 chr5 23004021 23004042 -180081490 + AT_rich Low_complexity Low_complexity 1 21 0 1280 201 29 42 chr5 23004044 23004357 -180081175 + AluJo SINE Alu 1 309 -3 23 0 0 0 chr5 23005449 23005472 -180080060 + AT_rich Low_complexity Low_complexity 1 23 0 183 222 0 0 chr5 23006518 23006563 -180078969 + GA-rich Low_complexity Low_complexity 2 46 0 30 45 0 0 chr5 23007556 23007600 -180077932 + AT_rich Low_complexity Low_complexity 1 44 0 183 204 0 0 chr5 23007626 23007680 -180077852 + (TA)n Simple_repeat Simple_repeat 1 54 0 22 35 0 0 chr5 23007688 23007717 -180077815 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr5 23007971 23007996 -180077536 + AT_rich Low_complexity Low_complexity 1 25 0 2089 115 0 3 chr5 23009270 23009566 -180075966 - AluSq SINE Alu -18 295 1 259 286 0 17 chr5 23009594 23009713 -180075819 + (TA)n Simple_repeat Simple_repeat 2 118 0 221 250 19 0 chr5 23009853 23009905 -180075627 + (TG)n Simple_repeat Simple_repeat 2 54 0 2667 7 0 0 chr5 23010945 23011245 -180074287 - L1P1 LINE L1 -536 5619 5320 272 0 0 0 chr5 23011245 23011284 -180074248 + L1PA2 LINE L1 6116 6154 -1 209 135 0 27 chr5 23011285 23011322 -180074210 + (TA)n Simple_repeat Simple_repeat 2 37 0 1423 194 56 18 chr5 23012813 23013097 -180072435 - AluJb SINE Alu -7 295 1 1462 251 82 24 chr5 23013120 23013571 -180071961 + MLT2B1 LTR ERVL 3 479 -41 284 216 0 8 chr5 23013574 23013708 -180071824 + (TA)n Simple_repeat Simple_repeat 1 133 0 202 227 15 0 chr5 23013720 23013786 -180071746 + (TA)n Simple_repeat Simple_repeat 2 68 0 405 296 53 15 chr5 23014160 23014424 -180071108 - HAL1 LINE L1 -698 1809 1536 250 319 22 29 chr5 23014660 23014798 -180070734 - HAL1 LINE L1 -1120 1387 1251 226 348 65 36 chr5 23015150 23015288 -180070244 - HAL1 LINE L1 -1599 908 767 262 291 187 0 chr5 23015941 23016075 -180069457 - L1MC4 LINE L1 -91 7951 7793 21 0 0 0 chr5 23018263 23018284 -180067248 + AT_rich Low_complexity Low_complexity 1 21 0 2352 97 0 0 chr5 23019334 23019645 -180065887 + AluSx SINE Alu 2 312 0 255 286 0 0 chr5 23020213 23020276 -180065256 + GA-rich Low_complexity Low_complexity 3 65 0 368 357 19 13 chr5 23021459 23021616 -180063916 + MIR SINE MIR 17 174 -88 534 280 43 33 chr5 23021777 23021988 -180063544 - MIR SINE MIR -16 246 34 295 168 56 0 chr5 23022610 23022753 -180062779 + (TA)n Simple_repeat Simple_repeat 1 151 0 21 36 0 0 chr5 23023113 23023141 -180062391 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr5 23023670 23023693 -180061839 + AT_rich Low_complexity Low_complexity 1 23 0 1531 164 65 44 chr5 23023988 23024355 -180061177 - THE1C LTR MaLR 0 375 1 1408 253 91 32 chr5 23024574 23025037 -180060495 + MLT1E2 LTR MaLR 137 626 0 3171 89 269 0 chr5 23025873 23026415 -180059117 + LTR12 LTR ERV1 1 688 0 659 214 91 0 chr5 23076727 23076798 -180008734 - L1MA9 LINE L1 -73 6239 6176 192 77 0 0 chr5 23076798 23076824 -180008708 + (TG)n Simple_repeat Simple_repeat 1 26 0 659 214 91 0 chr5 23076824 23076939 -180008593 - L1MA9 LINE L1 -136 6176 6036 1361 115 19 0 chr5 23077168 23077403 -180008129 + L1PA7 LINE L1 5932 6170 0 2192 104 0 7 chr5 23077403 23077702 -180007830 + AluSx SINE Alu 1 297 -15 2299 136 24 56 chr5 23078344 23078649 -180006883 - LTR23 LTR ERV1 0 437 149 2183 110 3 3 chr5 23078649 23078950 -180006582 + AluSg SINE Alu 1 301 -9 2299 136 24 56 chr5 23078950 23079094 -180006438 - LTR23 LTR ERV1 -288 149 2 24 32 0 0 chr5 23079133 23079164 -180006368 + AT_rich Low_complexity Low_complexity 1 31 0 499 162 43 17 chr5 23079463 23079580 -180005952 + L1MD1 LINE L1 6108 6227 -15 229 257 27 0 chr5 23079666 23079740 -180005792 + (TTTA)n Simple_repeat Simple_repeat 2 77 0 207 295 137 42 chr5 23079942 23080037 -180005495 - L2 LINE L2 0 3272 3169 366 245 107 71 chr5 23080193 23080389 -180005143 - MER20 DNA MER1_type -16 203 1 382 242 29 117 chr5 23080596 23080681 -180004851 - L2 LINE L2 -523 2791 2700 517 266 9 0 chr5 23080681 23080794 -180004738 - MER81 DNA DNA 0 114 1 382 242 29 117 chr5 23080794 23080823 -180004709 - L2 LINE L2 -614 2700 2670 2095 166 34 0 chr5 23080823 23081202 -180004330 + L1PB3 LINE L1 5763 6154 0 382 242 29 117 chr5 23081202 23081326 -180004206 - L2 LINE L2 -644 2670 2573 285 292 183 7 chr5 23081330 23081467 -180004065 - L2 LINE L2 -956 2358 2198 1361 214 84 25 chr5 23081467 23081823 -180003709 + MLT1B LTR MaLR 1 377 -13 2181 75 9 40 chr5 23082173 23082494 -180003038 - AluY SINE Alu 0 311 1 184 337 145 24 chr5 23082581 23082830 -180002702 - L2 LINE L2 -1841 1473 1195 2038 121 0 0 chr5 23084289 23084569 -180000963 + AluSx SINE Alu 21 300 -12 196 231 26 0 chr5 23084636 23084714 -180000818 + (TA)n Simple_repeat Simple_repeat 2 81 0 249 228 6 51 chr5 23086932 23087090 -179998442 + GA-rich Low_complexity Low_complexity 6 156 0 242 309 9 27 chr5 23087830 23087940 -179997592 - MLT1I LTR MaLR -1 408 301 4389 10 4 0 chr5 23088278 23088781 -179996751 + L1PA2 LINE L1 5650 6154 -1 21 0 0 0 chr5 23088853 23088874 -179996658 + AT_rich Low_complexity Low_complexity 1 21 0 252 59 0 0 chr5 23089646 23089680 -179995852 + (ATG)n Simple_repeat Simple_repeat 2 35 0 34 24 0 0 chr5 23091714 23091755 -179993777 + AT_rich Low_complexity Low_complexity 1 41 0 197 239 75 45 chr5 23091948 23092015 -179993517 - MIR SINE MIR 0 262 194 1540 97 5 0 chr5 23092999 23093216 -179992316 + L1PA8 LINE L1 5953 6170 -2 1043 143 0 0 chr5 23094582 23094767 -179990765 - AluSg/x SINE Alu 0 316 132 535 279 9 92 chr5 23094767 23094996 -179990536 - MIR SINE MIR -50 212 3 1997 113 0 55 chr5 23095462 23095790 -179989742 + AluSp SINE Alu 1 310 -3 7133 42 0 1 chr5 23097317 23098182 -179987350 - L1PA5 LINE L1 -13 6141 5278 * 17151 79 5 2 chr5 23098181 23101016 -179984516 + L1PA7 LINE L1 3019 5858 -296 1526 244 135 37 chr5 23101349 23101889 -179983643 - MLT1E LTR MaLR 0 593 1 320 308 7 28 chr5 23101928 23102071 -179983461 + GA-rich Low_complexity Low_complexity 4 143 0 225 236 158 47 chr5 23102586 23102713 -179982819 + MIR SINE MIR 113 253 -9 344 284 92 0 chr5 23102914 23103023 -179982509 - L2 LINE L2 -1 3312 3194 32 43 0 0 chr5 23103072 23103118 -179982414 + AT_rich Low_complexity Low_complexity 1 46 0 32 91 0 0 chr5 23104454 23104542 -179980990 + AT_rich Low_complexity Low_complexity 1 88 0 2482 47 3 0 chr5 23104550 23104848 -179980684 + AluY SINE Alu 1 299 -12 28 61 0 0 chr5 23104875 23104924 -179980608 + AT_rich Low_complexity Low_complexity 1 49 0 549 237 0 0 chr5 23106025 23106139 -179979393 + FLAM_A SINE Alu 22 135 -7 341 348 82 44 chr5 23106255 23106620 -179978912 + HAL1 LINE L1 1323 1701 -806 1549 239 74 69 chr5 23106628 23107194 -179978338 + L1MA8 LINE L1 23 591 -6439 1169 293 21 24 chr5 23107248 23107780 -179977752 + L1MA8 LINE L1 1864 2393 -4644 7404 178 67 38 chr5 23107789 23109652 -179975880 + L1MA8 LINE L1 4258 6065 -1261 190 0 67 0 chr5 23109652 23109682 -179975850 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 7404 178 67 38 chr5 23109682 23109729 -179975803 + L1MA8 LINE L1 6065 6109 -1217 228 35 0 0 chr5 23109729 23109758 -179975774 + (CA)n Simple_repeat Simple_repeat 2 30 0 7404 178 67 38 chr5 23109758 23109956 -179975576 + L1MA8 LINE L1 6109 6300 -1026 1718 189 70 57 chr5 23109956 23110496 -179975036 + LTR10B LTR ERV1 1 547 0 7404 178 67 38 chr5 23110496 23111275 -179974257 + L1MA8 LINE L1 6300 7326 0 1966 156 116 0 chr5 23111327 23111732 -179973800 - LTR47A LTR ERVL 0 452 1 2045 174 65 55 chr5 23111799 23112305 -179973227 + MER67D LTR ERV1 1 511 -3 306 275 107 34 chr5 23112498 23112760 -179972772 + L1ME LINE L1 5542 5822 -299 27 49 0 0 chr5 23113215 23113256 -179972276 + AT_rich Low_complexity Low_complexity 1 41 0 2181 89 9 16 chr5 23114056 23114403 -179971129 - AluSp SINE Alu 0 313 1 21 36 0 0 chr5 23115030 23115058 -179970474 + AT_rich Low_complexity Low_complexity 1 28 0 37 39 0 0 chr5 23115190 23115241 -179970291 + AT_rich Low_complexity Low_complexity 1 51 0 194 233 17 0 chr5 23115291 23115351 -179970181 + (TA)n Simple_repeat Simple_repeat 2 62 0 242 260 82 14 chr5 23116041 23116114 -179969418 - L2 LINE L2 -11 3302 3225 516 323 37 28 chr5 23116118 23116505 -179969027 - L2 LINE L2 -246 3067 2681 196 260 0 0 chr5 23118362 23118412 -179967120 - L2 LINE L2 0 3313 3264 1398 172 0 119 chr5 23118710 23119053 -179966479 - AluSg SINE Alu -8 302 1 285 51 0 0 chr5 23119094 23119133 -179966399 + (GA)n Simple_repeat Simple_repeat 1 39 0 208 354 124 31 chr5 23119468 23119629 -179965903 - L2 LINE L2 -847 2467 2292 483 258 86 38 chr5 23122524 23122733 -179962799 - LTR16A LTR ERVL -95 355 137 311 113 19 0 chr5 23123434 23123487 -179962045 + GA-rich Low_complexity Low_complexity 1 54 0 278 269 255 14 chr5 23123599 23123744 -179961788 + MIR SINE MIR 81 260 -2 311 294 29 10 chr5 23124554 23124656 -179960876 + L2 LINE L2 3208 3311 -2 2578 48 0 3 chr5 23124961 23125270 -179960262 - AluY SINE Alu -3 308 1 2516 39 0 3 chr5 23125738 23126044 -179959488 - AluY SINE Alu -6 305 1 22 0 0 0 chr5 23126797 23126819 -179958713 + AT_rich Low_complexity Low_complexity 1 22 0 354 80 0 0 chr5 23126938 23126988 -179958544 + (TG)n Simple_repeat Simple_repeat 1 50 0 8477 205 39 90 chr5 23128945 23129978 -179955554 + L1MA2 LINE L1 14 1098 -6467 2184 105 17 0 chr5 23129978 23130272 -179955260 + AluSc SINE Alu 1 299 -10 8477 205 39 90 chr5 23130272 23131939 -179953593 + L1MA2 LINE L1 1098 2912 -4653 6510 93 1 0 chr5 23131939 23132992 -179952540 + L1PA8 LINE L1 5106 6159 -13 8477 205 39 90 chr5 23132992 23133028 -179952504 + L1MA2 LINE L1 2912 2948 -4617 7643 164 56 13 chr5 23132998 23134692 -179950840 + L1MA2 LINE L1 4914 6533 -1190 * 2280 105 19 40 chr5 23134692 23134864 -179950668 + THE1B LTR MaLR 1 175 -189 1815 120 0 0 chr5 23134864 23135123 -179950409 + AluY SINE Alu 51 309 -2 2280 105 19 40 chr5 23135123 23135322 -179950210 + THE1B LTR MaLR 175 364 0 11152 104 7 2 chr5 23135322 23136895 -179948637 + THE1B-int LTR MaLR 1 1580 0 2060 148 22 22 chr5 23136895 23137259 -179948273 + THE1B LTR MaLR 1 364 0 7643 164 56 13 chr5 23137259 23138223 -179947309 + L1MA2 LINE L1 6532 7716 -7 1378 244 107 32 chr5 23138261 23138700 -179946832 + MLT1E LTR MaLR 113 584 -9 277 295 86 19 chr5 23138831 23138936 -179946596 + MIR SINE MIR 99 210 -52 195 162 0 0 chr5 23139459 23139496 -179946036 + (TATG)n Simple_repeat Simple_repeat 3 39 0 2358 70 3 3 chr5 23139755 23140053 -179945479 + AluY SINE Alu 1 298 -13 460 196 0 11 chr5 23140760 23140852 -179944680 + FLAM_A SINE Alu 47 137 -5 1200 183 82 63 chr5 23141416 23141783 -179943749 - MLT1A2 LTR MaLR 0 374 1 475 106 12 12 chr5 23142017 23142102 -179943430 + (TCCC)n Simple_repeat Simple_repeat 2 86 0 * 655 121 54 12 chr5 23142093 23142259 -179943273 + CT-rich Low_complexity Low_complexity 1 173 0 324 64 0 0 chr5 23142259 23142378 -179943154 + (TCTG)n Simple_repeat Simple_repeat 1 119 0 1875 150 0 19 chr5 23142306 23142331 -179943201 - AluSx SINE Alu -5 307 283 324 64 0 0 chr5 23142331 23142378 -179943154 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1875 150 0 19 chr5 23142378 23142665 -179942867 - AluSx SINE Alu -29 283 1 426 20 0 0 chr5 23142794 23142845 -179942687 + (CA)n Simple_repeat Simple_repeat 2 52 0 351 0 0 0 chr5 23142844 23142883 -179942649 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 2254 61 0 4 chr5 23142944 23143221 -179942311 - AluY SINE Alu -20 291 16 623 342 48 58 chr5 23144586 23145001 -179940531 - L3 LINE CR1 -476 1101 691 22 35 0 0 chr5 23145050 23145079 -179940453 + AT_rich Low_complexity Low_complexity 1 29 0 314 65 65 0 chr5 23145083 23145129 -179940403 + MADE1 DNA Mariner 1 49 -31 356 354 65 65 chr5 23145153 23145342 -179940190 - L3 LINE CR1 -1023 554 363 2178 120 0 7 chr5 23145342 23145642 -179939890 + AluSx SINE Alu 3 300 -12 356 354 65 65 chr5 23145642 23145822 -179939710 - L3 LINE CR1 -1213 364 185 2014 175 41 34 chr5 23146636 23147185 -179938347 + MLT2A2 LTR ERVL 1 554 0 262 282 161 16 chr5 23148152 23148276 -179937256 + MIR SINE MIR 65 206 -56 216 146 0 49 chr5 23148390 23148431 -179937101 + L2 LINE L2 3216 3254 -18 1738 147 69 40 chr5 23148435 23148783 -179936749 + MLT1A1 LTR MaLR 1 358 -7 1186 29 0 0 chr5 23149262 23149400 -179936132 - AluY SINE Alu -21 290 153 28 71 0 0 chr5 23151552 23151608 -179933924 + AT_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr5 23153057 23153089 -179932443 + AT_rich Low_complexity Low_complexity 1 32 0 220 321 71 18 chr5 23154421 23154533 -179930999 - MIR3 SINE MIR -49 159 42 33 0 0 0 chr5 23155031 23155064 -179930468 + AT_rich Low_complexity Low_complexity 1 33 0 1923 151 0 16 chr5 23157645 23157950 -179927582 + AluSx SINE Alu 1 300 -12 26745 45 2 0 chr5 23158476 23162609 -179922923 + L1PA5 LINE L1 2015 6154 0 2056 142 0 0 chr5 23165469 23165772 -179919760 - AluSg SINE Alu -3 307 5 236 162 0 0 chr5 23165821 23165858 -179919674 + MLT2B3 LTR ERVL 473 509 -45 205 207 17 0 chr5 23165858 23165916 -179919616 + (TA)n Simple_repeat Simple_repeat 1 59 0 * 211 232 18 0 chr5 23165878 23165934 -179919598 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 348 352 23 0 chr5 23166376 23166504 -179919028 + MIR SINE MIR 48 178 -84 2107 91 39 0 chr5 23166809 23167127 -179918405 + AluSx SINE Alu 1 312 0 24 32 0 0 chr5 23167241 23167272 -179918260 + AT_rich Low_complexity Low_complexity 1 31 0 248 313 12 0 chr5 23168206 23168286 -179917246 - MLT1L LTR MaLR -405 210 130 21 0 0 0 chr5 23169500 23169521 -179916011 + AT_rich Low_complexity Low_complexity 1 21 0 338 367 39 50 chr5 23169725 23170082 -179915450 - L2 LINE L2 -408 2906 2554 5848 233 38 65 chr5 23170105 23171940 -179913592 + L1MA4A LINE L1 1 1785 -5064 * 8123 173 23 21 chr5 23171938 23174495 -179911037 + L1MA4A LINE L1 4366 6930 -75 1477 183 55 18 chr5 23174495 23174769 -179910763 - AluJb SINE Alu -23 289 6 8123 173 23 21 chr5 23174769 23174841 -179910691 + L1MA4A LINE L1 6930 7000 -5 1369 219 11 21 chr5 23177694 23178008 -179907524 - AluJo SINE Alu 0 313 3 437 326 31 31 chr5 23179370 23179563 -179905969 - HAL1 LINE L1 -1126 1381 1189 237 296 28 0 chr5 23179941 23180012 -179905520 - AluJ/FRAM SINE Alu -16 286 214 193 102 68 23 chr5 23180052 23180140 -179905392 + (TA)n Simple_repeat Simple_repeat 2 93 0 231 161 56 7 chr5 23180151 23180294 -179905238 + (TA)n Simple_repeat Simple_repeat 2 151 0 446 272 83 74 chr5 23180326 23180650 -179904882 - HAL1 LINE L1 -2178 329 3 2019 112 3 3 chr5 23180767 23181081 -179904451 - AluSq SINE Alu 0 316 3 2631 35 0 6 chr5 23182196 23182509 -179903023 + AluY SINE Alu 1 311 0 23 54 0 0 chr5 23182924 23182961 -179902571 + AT_rich Low_complexity Low_complexity 1 37 0 1528 240 55 83 chr5 23183292 23183628 -179901904 + MER67D LTR ERV1 1 318 -196 1916 134 147 32 chr5 23183628 23183838 -179901694 - MSTA LTR MaLR -4 424 240 2121 127 3 3 chr5 23183838 23184145 -179901387 - AluSp SINE Alu -6 307 1 1916 134 147 32 chr5 23184145 23184314 -179901218 - MSTA LTR MaLR -188 240 1 1528 240 55 83 chr5 23184314 23184506 -179901026 + MER67D LTR ERV1 318 514 0 29 28 0 0 chr5 23184790 23184826 -179900706 + AT_rich Low_complexity Low_complexity 1 36 0 51 83 0 0 chr5 23185180 23185301 -179900231 + AT_rich Low_complexity Low_complexity 1 121 0 465 290 0 0 chr5 23185426 23185526 -179900006 + MER110-int LTR ERV1 3720 3819 -828 556 290 35 56 chr5 23185751 23186037 -179899495 + MER110-int LTR ERV1 3981 4260 -387 23 54 0 0 chr5 23186269 23186306 -179899226 + AT_rich Low_complexity Low_complexity 1 37 0 2369 54 14 3 chr5 23187606 23187901 -179897631 - AluY SINE Alu -13 298 1 297 75 0 0 chr5 23187968 23188008 -179897524 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 88 0 0 chr5 23188395 23188452 -179897080 + AT_rich Low_complexity Low_complexity 1 57 0 440 62 16 0 chr5 23188521 23188585 -179896947 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 22 0 0 0 chr5 23188585 23188607 -179896925 + AT_rich Low_complexity Low_complexity 1 22 0 239 311 139 8 chr5 23189139 23189261 -179896271 - L2 LINE L2 -255 3058 2921 222 191 0 0 chr5 23189315 23189357 -179896175 - L2 LINE L2 0 3313 3272 22 0 0 0 chr5 23189840 23189862 -179895670 + AT_rich Low_complexity Low_complexity 1 22 0 367 271 165 29 chr5 23190357 23190527 -179895005 + MIR SINE MIR 65 257 -5 567 284 98 55 chr5 23190961 23191434 -179894098 + MLT1D LTR MaLR 7 387 -3 3549 230 35 114 chr5 23191437 23192952 -179892580 + MLT1D-int LTR MaLR 1 1371 0 984 281 56 46 chr5 23192952 23193451 -179892081 + MLT1D LTR MaLR 1 504 -1 732 305 44 30 chr5 23193575 23193870 -179891662 - L2 LINE L2 -962 2352 2054 460 240 120 40 chr5 23194304 23194504 -179891028 - LTR45 LTR ERV1 -7 518 303 427 258 95 58 chr5 23195022 23195270 -179890262 + MLT1J LTR MaLR 64 288 -162 1755 188 19 9 chr5 23195652 23195977 -179889555 + MLT1B LTR MaLR 9 336 -54 418 90 13 13 chr5 23197116 23197194 -179888338 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 705 196 0 21 chr5 23198410 23198553 -179886979 - FLAM_C SINE Alu -3 140 1 1305 249 35 46 chr5 23199626 23200060 -179885472 + MLT1C LTR MaLR 39 467 0 3266 234 48 29 chr5 23200060 23200931 -179884601 + MLT1C-int LTR MaLR 1 888 -483 670 239 75 6 chr5 23201061 23201220 -179884312 + MLT1B LTR MaLR 298 467 0 303 306 27 18 chr5 23201229 23201340 -179884192 - MIR SINE MIR -120 142 31 29 0 0 0 chr5 23202115 23202144 -179883388 + AT_rich Low_complexity Low_complexity 1 29 0 2128 121 10 0 chr5 23202887 23203192 -179882340 + AluSq SINE Alu 3 310 -3 1824 182 0 39 chr5 23203727 23204085 -179881447 + MER2 DNA MER2_type 1 344 0 239 380 67 37 chr5 23205090 23205553 -179879979 + L2 LINE L2 2282 2758 -556 292 273 42 7 chr5 23206513 23206656 -179878876 + (TATATG)n Simple_repeat Simple_repeat 6 153 0 29 0 0 0 chr5 23207317 23207346 -179878186 + AT_rich Low_complexity Low_complexity 1 29 0 4106 117 48 0 chr5 23208054 23208677 -179876855 + MER39B LTR ERV1 1 653 0 196 344 113 41 chr5 23209207 23209402 -179876130 - MIR SINE MIR -29 233 25 194 345 63 63 chr5 23210751 23211006 -179874526 + L2 LINE L2 1536 1790 -1524 202 322 150 46 chr5 23211106 23211652 -179873880 - L2 LINE L2 -1044 2270 1668 27 49 0 0 chr5 23212685 23212726 -179872806 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr5 23213222 23213252 -179872280 + AT_rich Low_complexity Low_complexity 1 30 0 285 266 79 89 chr5 23213295 23213556 -179871976 + MLT1H LTR MaLR 1 291 -258 225 229 14 29 chr5 23213724 23213794 -179871738 + MLT1B-int LTR MaLR 5 73 -1298 2695 19 0 3 chr5 23214016 23214324 -179871208 - AluY SINE Alu -4 307 1 1284 224 65 20 chr5 23214934 23215176 -179870356 - Charlie1a DNA MER1_type -1311 1450 1220 1423 240 22 52 chr5 23215176 23215584 -179869948 + MSTD LTR MaLR 1 396 0 1284 224 65 20 chr5 23215584 23215893 -179869639 - Charlie1a DNA MER1_type -1541 1220 811 24 32 0 0 chr5 23215917 23215948 -179869584 + AT_rich Low_complexity Low_complexity 1 31 0 5857 76 14 30 chr5 23215951 23216547 -179868985 - L1P LINE L1 -1544 4602 3998 2005 116 0 0 chr5 23216547 23216824 -179868708 + AluSq SINE Alu 1 277 -36 189 0 0 0 chr5 23216833 23216854 -179868678 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 5857 76 14 30 chr5 23216854 23217103 -179868429 - L1P LINE L1 -2156 3990 3761 6827 139 6 36 chr5 23217103 23219136 -179866396 - L1PA10 LINE L1 -17 6151 4154 6503 71 1 0 chr5 23219140 23219981 -179865551 - L1PA7 LINE L1 -6 6148 5307 2746 150 34 26 chr5 23219985 23220491 -179865041 - L1PA10 LINE L1 -1958 4188 3679 1667 241 62 69 chr5 23220491 23221228 -179864304 - Charlie1a DNA MER1_type -676 779 48 2538 51 0 0 chr5 23221668 23222006 -179863526 + AluY SINE Alu 1 338 0 38 0 0 0 chr5 23222040 23222078 -179863454 + AT_rich Low_complexity Low_complexity 1 38 0 448 306 149 0 chr5 23222315 23222576 -179862956 + MLT1H LTR MaLR 250 549 0 223 167 0 45 chr5 23223005 23223026 -179862506 + (TA)n Simple_repeat Simple_repeat 2 22 -42 189 0 0 0 chr5 23223026 23223047 -179862485 + (GA)n Simple_repeat Simple_repeat 2 22 0 223 167 0 45 chr5 23223047 23223091 -179862441 + (TA)n Simple_repeat Simple_repeat 22 64 0 241 129 0 65 chr5 23223091 23223153 -179862379 + LTR66 LTR ERVL 394 451 -159 34 42 0 0 chr5 23223636 23223684 -179861848 + AT_rich Low_complexity Low_complexity 1 48 0 2019 97 0 0 chr5 23223894 23224161 -179861371 + AluSc SINE Alu 38 304 -5 250 102 51 17 chr5 23224227 23224286 -179861246 + T-rich Low_complexity Low_complexity 2 62 0 233 303 14 32 chr5 23224892 23225038 -179860494 + CT-rich Low_complexity Low_complexity 1 143 0 2191 111 0 0 chr5 23225127 23225416 -179860116 - AluSg SINE Alu -21 289 1 635 307 59 70 chr5 23225595 23225966 -179859566 - MLT1J LTR MaLR -144 367 1 194 62 31 0 chr5 23226100 23226132 -179859400 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 240 229 84 24 chr5 23226139 23226222 -179859310 - L1MC4 LINE L1 -1339 6703 6616 230 79 0 26 chr5 23226394 23226432 -179859100 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr5 23226962 23226984 -179858548 + AT_rich Low_complexity Low_complexity 1 22 0 1415 190 7 28 chr5 23227043 23227387 -179858145 - AluJb SINE Alu 0 338 1 21 36 0 0 chr5 23227432 23227460 -179858072 + AT_rich Low_complexity Low_complexity 1 28 0 5787 148 72 27 chr5 23229181 23230357 -179855175 + Tigger3b DNA MER2_type 3 1231 0 243 61 0 0 chr5 23230494 23230527 -179855005 + (TG)n Simple_repeat Simple_repeat 2 34 0 35 41 0 0 chr5 23231466 23231515 -179854017 + AT_rich Low_complexity Low_complexity 1 49 0 348 290 130 35 chr5 23231515 23231746 -179853786 - MIR SINE MIR 0 262 10 190 380 44 0 chr5 23232396 23232509 -179853023 + L2 LINE L2 2296 2413 -901 991 91 14 14 chr5 23232826 23232954 -179852578 + LTR8 LTR ERV1 1 128 -563 2812 110 23 0 chr5 23232954 23233353 -179852179 + MLT2A2 LTR ERVL 2 409 -44 227 156 0 0 chr5 23233361 23233406 -179852126 - LTR66 LTR ERVL -171 439 395 255 125 0 0 chr5 23233432 23233472 -179852060 + (TG)n Simple_repeat Simple_repeat 1 40 0 367 94 0 0 chr5 23233472 23233525 -179852007 + MLT2A2 LTR ERVL 399 451 -2 3580 105 40 42 chr5 23233527 23233888 -179851644 + LTR8 LTR ERV1 123 484 -207 3586 51 2 47 chr5 23233888 23234397 -179851135 + L1PA5 LINE L1 5664 6149 -5 3580 105 40 42 chr5 23234397 23234604 -179850928 + LTR8 LTR ERV1 484 690 -1 21 0 0 0 chr5 23234902 23234923 -179850609 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr5 23235501 23235523 -179850009 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 180 0 0 0 chr5 23235662 23235682 -179849850 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 230 314 74 138 chr5 23236056 23236352 -179849180 + L2 LINE L2 2995 3271 -1 620 205 92 31 chr5 23236470 23236665 -179848867 - MER3 DNA MER1_type -1 208 2 41 78 0 0 chr5 23236775 23236865 -179848667 + AT_rich Low_complexity Low_complexity 1 90 0 1844 220 74 28 chr5 23238405 23238878 -179846654 - MLT1D LTR MaLR -5 500 6 1858 151 10 0 chr5 23239662 23239953 -179845579 - AluSx SINE Alu -18 294 1 563 237 0 0 chr5 23240309 23240423 -179845109 + FLAM_A SINE Alu 2 115 -18 215 313 0 25 chr5 23241787 23241867 -179843665 + (CATATA)n Simple_repeat Simple_repeat 6 83 0 * 221 246 0 33 chr5 23241815 23241876 -179843656 + (TATATG)n Simple_repeat Simple_repeat 3 61 0 186 43 0 0 chr5 23245210 23245233 -179840299 + (TTC)n Simple_repeat Simple_repeat 2 24 0 980 184 5 74 chr5 23245809 23246026 -179839506 + AluJb SINE Alu 1 202 -110 378 0 0 0 chr5 23246161 23246203 -179839329 + (TG)n Simple_repeat Simple_repeat 1 42 0 192 290 48 0 chr5 23246458 23246520 -179839012 + L2 LINE L2 3206 3270 -2 2047 207 40 72 chr5 23250004 23250752 -179834780 - L1MC3 LINE L1 -528 7257 6534 31 44 0 0 chr5 23251246 23251291 -179834241 + AT_rich Low_complexity Low_complexity 1 45 0 180 296 62 25 chr5 23251786 23251867 -179833665 + L2 LINE L2 2979 3062 -210 266 0 0 29 chr5 23252202 23252237 -179833295 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 354 222 0 0 chr5 23252551 23252623 -179832909 - MLT1A2 LTR MaLR -302 72 1 266 344 194 13 chr5 23252626 23252940 -179832592 - L2 LINE L2 -390 2924 2554 642 214 55 39 chr5 23253042 23253224 -179832308 + MER5A DNA MER1_type 2 186 -3 631 333 94 15 chr5 23253234 23253576 -179831956 - L2 LINE L2 -996 2318 1950 485 242 89 32 chr5 23253586 23253776 -179831756 + MER63B DNA MER1_type 1 201 -235 252 0 0 0 chr5 23253777 23253805 -179831727 + (TA)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr5 23254335 23254356 -179831176 + AT_rich Low_complexity Low_complexity 1 21 0 1179 141 0 0 chr5 23254651 23254821 -179830711 - LTR8 LTR ERV1 -1 690 521 1085 36 7 0 chr5 23254858 23254995 -179830537 - L1PA5 LINE L1 -5 6149 6012 21 71 0 0 chr5 23257787 23257829 -179827703 + AT_rich Low_complexity Low_complexity 1 42 0 338 336 115 65 chr5 23258618 23259112 -179826420 + L2 LINE L2 2296 2814 -500 381 328 147 31 chr5 23259252 23259578 -179825954 + L2 LINE L2 2950 3313 0 23 0 0 0 chr5 23259586 23259609 -179825923 + AT_rich Low_complexity Low_complexity 1 23 0 7694 186 11 15 chr5 23259692 23262148 -179823384 + L1MA6 LINE L1 3786 6239 -61 21 36 0 0 chr5 23262197 23262225 -179823307 + AT_rich Low_complexity Low_complexity 1 28 0 355 210 0 0 chr5 23262739 23262801 -179822731 - MLT1C LTR MaLR 0 467 406 1936 151 3 7 chr5 23262801 23263099 -179822433 - AluSx SINE Alu -15 297 1 594 245 20 7 chr5 23263115 23263266 -179822266 - MLT1A2 LTR MaLR -221 153 1 314 375 157 6 chr5 23263268 23263593 -179821939 - L2 LINE L2 -387 2927 2554 645 337 78 42 chr5 23263644 23263697 -179821835 - L2 LINE L2 -943 2371 2321 684 213 49 38 chr5 23263697 23263880 -179821652 + MER5A DNA MER1_type 2 186 -3 645 337 78 42 chr5 23263880 23264235 -179821297 - L2 LINE L2 -993 2321 1948 1204 252 67 22 chr5 23264244 23264553 -179820979 + MER63B DNA MER1_type 1 335 -727 243 0 0 0 chr5 23264553 23264580 -179820952 + (TG)n Simple_repeat Simple_repeat 2 28 0 1204 252 67 22 chr5 23264580 23264687 -179820845 + MER63B DNA MER1_type 335 436 0 796 216 17 11 chr5 23265498 23265674 -179819858 - MLT1C LTR MaLR 0 467 291 1069 155 0 0 chr5 23265675 23265889 -179819643 - AluSg/x SINE Alu 0 345 132 2041 129 0 17 chr5 23265889 23266048 -179819484 - AluSx SINE Alu -20 292 139 2430 74 0 0 chr5 23266048 23266345 -179819187 - AluSg SINE Alu -13 297 1 2041 129 0 17 chr5 23266345 23266480 -179819052 - AluSx SINE Alu -173 139 3 935 249 64 10 chr5 23266480 23266777 -179818755 - MLT1C LTR MaLR -152 315 3 25 31 0 0 chr5 23267522 23267554 -179817978 + AT_rich Low_complexity Low_complexity 1 32 0 1901 120 36 7 chr5 23267978 23268275 -179817257 + AluY SINE Alu 1 305 0 583 238 49 12 chr5 23268511 23268675 -179816857 - L1MA9 LINE L1 -194 6118 5949 2151 127 0 0 chr5 23268997 23269304 -179816228 - AluSq SINE Alu -6 307 1 2060 102 41 0 chr5 23269314 23269607 -179815925 - AluSx SINE Alu -7 305 1 24 32 0 0 chr5 23269898 23269929 -179815603 + AT_rich Low_complexity Low_complexity 1 31 0 33 43 0 0 chr5 23269996 23270043 -179815489 + AT_rich Low_complexity Low_complexity 1 47 0 21 71 0 0 chr5 23271966 23272008 -179813524 + AT_rich Low_complexity Low_complexity 1 42 0 2188 145 5 35 chr5 23272239 23272612 -179812920 + THE1B LTR MaLR 1 362 -2 1777 152 11 0 chr5 23273004 23273287 -179812245 + AluSx SINE Alu 2 287 -25 292 184 0 26 chr5 23273287 23273363 -179812169 + GA-rich Low_complexity Low_complexity 3 76 0 332 343 127 26 chr5 23273529 23273658 -179811874 + L2 LINE L2 2214 2329 -985 1704 182 0 3 chr5 23273658 23273949 -179811583 + AluJo SINE Alu 13 302 -10 189 0 0 0 chr5 23273955 23273976 -179811556 + (CAGAA)n Simple_repeat Simple_repeat 2 22 0 332 343 127 26 chr5 23273976 23274425 -179811107 + L2 LINE L2 2333 2937 -377 245 29 29 0 chr5 23274560 23274594 -179810938 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2393 78 7 0 chr5 23275061 23275368 -179810164 - AluSc SINE Alu 0 309 1 290 257 18 53 chr5 23275493 23275606 -179809926 + Zaphod DNA AcHobo 3923 4031 0 639 285 75 46 chr5 23275649 23275954 -179809578 + L2 LINE L2 2995 3308 -5 28 71 0 0 chr5 23276943 23276999 -179808533 + AT_rich Low_complexity Low_complexity 1 56 0 309 298 0 22 chr5 23277268 23277374 -179808158 + MER5A DNA MER1_type 7 121 -68 1554 171 21 114 chr5 23277523 23277945 -179807587 - MLT1B LTR MaLR -7 383 1 257 0 30 0 chr5 23278680 23278713 -179806819 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1408 193 11 19 chr5 23278718 23278987 -179806545 - AluJo SINE Alu -30 282 16 8617 40 4 3 chr5 23279087 23280195 -179805337 + L1P LINE L1 2287 3395 -2751 2309 144 13 3 chr5 23280347 23280736 -179804796 - L1MC1 LINE L1 -5 6328 5936 1187 129 18 0 chr5 23280951 23281121 -179804411 + MER1B DNA MER1_type 167 339 0 638 256 14 14 chr5 23281121 23281340 -179804192 - L1M4 LINE L1 -1566 4580 4362 4883 203 10 27 chr5 23281617 23282937 -179802595 + L1MA6 LINE L1 4933 6239 -61 291 289 40 0 chr5 23283381 23283457 -179802075 - AluJ/FLAM SINE Alu -223 79 1 2656 322 81 64 chr5 23283552 23284599 -179800933 + L2 LINE L2 1069 2097 -1216 1319 224 107 57 chr5 23284599 23285040 -179800492 - MER31B LTR ERV1 0 466 4 2656 322 81 64 chr5 23285040 23286203 -179799329 + L2 LINE L2 2097 3312 -1 226 333 0 0 chr5 23286680 23286740 -179798792 - MIR SINE MIR -139 123 64 444 280 60 6 chr5 23287553 23287721 -179797811 - MER115 DNA AcHobo 0 693 517 23 78 0 0 chr5 23288181 23288232 -179797300 + AT_rich Low_complexity Low_complexity 1 51 0 3711 117 29 15 chr5 23289827 23290416 -179795116 - L1PA13 LINE L1 -4 6159 5563 2515 52 0 0 chr5 23290875 23291184 -179794348 + AluY SINE Alu 1 309 -2 187 381 24 0 chr5 23292049 23292133 -179793399 - L2 LINE L2 -6 3266 3181 1692 176 7 7 chr5 23293043 23293338 -179792194 + AluJb SINE Alu 5 299 -13 3985 166 71 42 chr5 23293844 23294751 -179790781 + L1MA10 LINE L1 5401 6333 -1 461 330 198 18 chr5 23296076 23296409 -179789123 - L2 LINE L2 0 3313 2921 756 189 17 83 chr5 23296429 23296609 -179788923 + AluJo SINE Alu 65 232 -80 1222 219 0 33 chr5 23297912 23298208 -179787324 - AluJo SINE Alu 0 308 22 2335 85 3 7 chr5 23299185 23299491 -179786041 - AluSp SINE Alu -8 305 1 1757 123 4 0 chr5 23299797 23300040 -179785492 - AluSx SINE Alu -68 244 1 194 91 30 0 chr5 23300298 23300331 -179785201 + A-rich Low_complexity Low_complexity 3 36 0 2337 216 12 26 chr5 23301172 23301680 -179783852 + MER74A LTR ERVL 3 503 -55 327 110 0 220 chr5 23301754 23301796 -179783736 + MADE1 DNA Mariner 1 10 -70 2510 53 0 37 chr5 23301796 23302117 -179783415 - AluY SINE Alu 0 311 3 327 110 0 220 chr5 23302117 23302174 -179783358 + MADE1 DNA Mariner 10 78 -2 1666 140 61 4 chr5 23302453 23302731 -179782801 - AluJb SINE Alu -7 305 12 1977 167 2 57 chr5 23303764 23304166 -179781366 - L1PA16 LINE L1 -20 6146 5767 1789 170 35 67 chr5 23304223 23304275 -179781257 - MLT1B LTR MaLR -2 388 336 1020 136 29 83 chr5 23304275 23304517 -179781015 + MER30 DNA MER1_type 2 230 0 1789 170 35 67 chr5 23304517 23304865 -179780667 - MLT1B LTR MaLR -54 336 1 2049 135 3 0 chr5 23305118 23305414 -179780118 - AluSx SINE Alu -15 297 1 653 339 55 28 chr5 23305623 23306204 -179779328 + L2 LINE L2 2716 3313 0 213 333 62 49 chr5 23306366 23306591 -179778941 - L2 LINE L2 -230 3042 2815 3124 201 8 5 chr5 23306872 23307474 -179778058 + MER6A DNA MER2_type 1 604 -1 207 232 0 0 chr5 23308340 23308396 -179777136 + (TA)n Simple_repeat Simple_repeat 2 57 0 424 266 66 111 chr5 23308716 23308942 -179776590 - MIR SINE MIR -24 238 23 559 270 111 136 chr5 23309373 23309718 -179775814 + L2 LINE L2 1842 2194 -1119 709 236 30 50 chr5 23309718 23309917 -179775615 + MIR SINE MIR 45 239 -23 559 270 111 136 chr5 23309917 23310403 -179775129 + L2 LINE L2 2194 2691 -622 2146 117 0 32 chr5 23310403 23310719 -179774813 - AluSx SINE Alu -6 306 1 559 270 111 136 chr5 23310719 23311181 -179774351 + L2 LINE L2 2691 3280 -33 444 219 0 0 chr5 23311476 23311572 -179773960 - L1MA6 LINE L1 -6 6294 6199 22 70 0 0 chr5 23311577 23311620 -179773912 + AT_rich Low_complexity Low_complexity 1 43 0 1928 143 0 31 chr5 23311657 23311979 -179773553 - AluSx SINE Alu 0 312 1 21 0 0 0 chr5 23314506 23314527 -179771005 + AT_rich Low_complexity Low_complexity 1 21 0 2580 110 3 6 chr5 23314869 23315234 -179770298 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr5 23315269 23315301 -179770231 + AT_rich Low_complexity Low_complexity 1 32 0 279 54 0 0 chr5 23315403 23315440 -179770092 + (CA)n Simple_repeat Simple_repeat 2 38 0 27 0 0 0 chr5 23317793 23317820 -179767712 + AT_rich Low_complexity Low_complexity 1 27 0 2958 180 36 170 chr5 23318175 23318923 -179766609 - L1MC3 LINE L1 -8 7777 7221 279 309 0 0 chr5 23318923 23319004 -179766528 - MLT1F1 LTR MaLR -442 125 45 2958 180 36 170 chr5 23319004 23319613 -179765919 - L1MC3 LINE L1 -564 7221 6532 31 44 0 0 chr5 23320106 23320151 -179765381 + AT_rich Low_complexity Low_complexity 1 45 0 1722 239 34 30 chr5 23320466 23320969 -179764563 - MLT1D LTR MaLR 0 505 1 4866 118 18 24 chr5 23320974 23321736 -179763796 + MER4E LTR ERV1 1 758 -21 21 0 0 0 chr5 23322772 23322793 -179762739 + AT_rich Low_complexity Low_complexity 1 21 0 918 182 13 0 chr5 23323289 23323448 -179762084 + MER2 DNA MER2_type 1 161 -184 230 371 0 0 chr5 23323500 23323570 -179761962 + MER2 DNA MER2_type 272 341 -4 2186 130 0 0 chr5 23323659 23323959 -179761573 - AluSq SINE Alu -13 300 1 21 57 0 0 chr5 23324017 23324052 -179761480 + AT_rich Low_complexity Low_complexity 1 35 0 452 250 47 75 chr5 23324182 23324511 -179761021 + L1ME LINE L1 5333 5653 -517 189 0 0 0 chr5 23324699 23324720 -179760812 + (TG)n Simple_repeat Simple_repeat 2 22 0 1498 135 104 4 chr5 23325543 23325802 -179759730 + AluSx SINE Alu 2 286 -26 2091 125 0 10 chr5 23326427 23326730 -179758802 + AluSg SINE Alu 1 300 -10 27 62 0 0 chr5 23326775 23326823 -179758709 + AT_rich Low_complexity Low_complexity 1 48 0 301 389 21 21 chr5 23327339 23327483 -179758049 + L1ME LINE L1 443 586 -5533 619 296 100 52 chr5 23327590 23328229 -179757303 + L1ME LINE L1 4121 4790 -1339 300 341 0 0 chr5 23328482 23328611 -179756921 + L1ME LINE L1 4941 5069 -1060 294 281 66 53 chr5 23328701 23329004 -179756528 + L1ME LINE L1 5241 5547 -598 1877 158 0 0 chr5 23329273 23329565 -179755967 + AluJb SINE Alu 1 292 -20 23 0 0 0 chr5 23329789 23329812 -179755720 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr5 23330056 23330086 -179755446 + AT_rich Low_complexity Low_complexity 1 30 0 356 56 38 62 chr5 23330323 23330402 -179755130 + MLT2C2 LTR ERVL 348 464 0 267 259 0 0 chr5 23331940 23331994 -179753538 - MER115 DNA AcHobo -639 54 1 2038 86 0 0 chr5 23332185 23332440 -179753092 - AluY SINE Alu -12 299 45 244 286 101 17 chr5 23332568 23332687 -179752845 + MIR SINE MIR 125 253 -9 30 45 0 0 chr5 23332977 23333021 -179752511 + AT_rich Low_complexity Low_complexity 1 44 0 192 77 0 0 chr5 23333738 23333764 -179751768 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 31 0 0 0 chr5 23333991 23334022 -179751510 + AT_rich Low_complexity Low_complexity 1 31 0 883 223 66 15 chr5 23334409 23334606 -179750926 - MER58A DNA MER1_type -16 208 2 200 346 103 22 chr5 23336002 23336187 -179749345 + L2 LINE L2 2164 2363 -951 25 40 0 20 chr5 23336729 23336746 -179748786 + AT_rich Low_complexity Low_complexity 1 17 -32 1773 162 0 17 chr5 23336746 23337048 -179748484 - AluJb SINE Alu -15 297 1 25 40 0 20 chr5 23337048 23337080 -179748452 + AT_rich Low_complexity Low_complexity 17 49 0 239 0 32 0 chr5 23337543 23337574 -179747958 + (TTTTTA)n Simple_repeat Simple_repeat 4 35 0 4025 31 4 0 chr5 23337575 23338058 -179747474 - L1PA4 LINE L1 -3 6152 5668 225 167 0 0 chr5 23338061 23338097 -179747435 - MLT1I LTR MaLR -276 133 98 333 218 0 0 chr5 23338239 23338317 -179747215 + GA-rich Low_complexity Low_complexity 3 80 0 182 269 0 19 chr5 23338847 23338899 -179746633 - L2 LINE L2 -1 3312 3262 9770 252 53 26 chr5 23339048 23341734 -179743798 - HERVL-C1 LTR ERVL -2897 2757 1 335 125 0 0 chr5 23341734 23341782 -179743750 - MLT2C1 LTR ERVL 0 397 350 367 259 14 0 chr5 23341785 23341924 -179743608 + (TA)n Simple_repeat Simple_repeat 2 142 0 1700 244 6 57 chr5 23341927 23341950 -179743582 - MLT2B1 LTR ERVL -41 479 456 428 0 19 0 chr5 23341950 23342002 -179743530 + (GA)n Simple_repeat Simple_repeat 2 54 0 1700 244 6 57 chr5 23342002 23342483 -179743049 - MLT2B1 LTR ERVL -64 456 1 22 0 0 0 chr5 23342807 23342829 -179742703 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr5 23343411 23343438 -179742094 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr5 23343563 23343591 -179741941 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr5 23344376 23344423 -179741109 + AT_rich Low_complexity Low_complexity 1 47 0 718 240 87 45 chr5 23344475 23344762 -179740770 + HAL1 LINE L1 248 546 -1961 516 32 0 0 chr5 23345118 23345180 -179740352 + (TA)n Simple_repeat Simple_repeat 2 63 0 27 49 0 0 chr5 23345620 23345661 -179739871 + AT_rich Low_complexity Low_complexity 1 41 0 32 0 0 0 chr5 23345718 23345750 -179739782 + AT_rich Low_complexity Low_complexity 1 32 0 506 236 214 11 chr5 23345934 23346116 -179739416 + MER20 DNA MER1_type 1 219 0 258 309 27 27 chr5 23346214 23346324 -179739208 + MIR SINE MIR 23 132 -76 234 250 0 0 chr5 23346919 23346967 -179738565 + MLT1G1 LTR MaLR 144 191 -404 2240 90 9 0 chr5 23346997 23347319 -179738213 - L1PB1 LINE L1 0 6151 5827 44 0 0 0 chr5 23347687 23347731 -179737801 + AT_rich Low_complexity Low_complexity 1 44 0 1327 60 6 0 chr5 23347769 23347935 -179737597 - AluY SINE Alu -16 295 129 2520 45 6 6 chr5 23347937 23348248 -179737284 - AluY SINE Alu 0 311 1 341 173 107 0 chr5 23348467 23348542 -179736990 + MER103 DNA DNA 82 164 -2 1899 163 33 0 chr5 23348612 23348944 -179736588 - MER2 DNA MER2_type 0 344 2 319 345 40 40 chr5 23348967 23349193 -179736339 + MIR SINE MIR 37 262 0 345 117 0 0 chr5 23349195 23349255 -179736277 + (TGG)n Simple_repeat Simple_repeat 1 60 0 2995 93 61 4 chr5 23350180 23350640 -179734892 + LTR19A LTR ERV1 1 486 0 383 136 0 0 chr5 23350712 23350771 -179734761 - MER20 DNA MER1_type 0 219 161 767 224 18 54 chr5 23351197 23351420 -179734112 - MER20 DNA MER1_type -3 216 2 339 180 11 22 chr5 23351430 23351519 -179734013 - MER5C DNA MER1_type -1 323 236 940 179 0 0 chr5 23351695 23351851 -179733681 - FRAM SINE Alu -10 156 1 183 129 0 0 chr5 23353007 23353038 -179732494 + (TA)n Simple_repeat Simple_repeat 1 31 0 448 349 40 9 chr5 23354218 23354539 -179730993 + MER46C DNA MER2_type 7 337 -1 207 331 100 23 chr5 23354541 23354671 -179730861 - MIR3 SINE MIR -36 172 33 191 250 34 102 chr5 23355927 23356015 -179729517 + MIR SINE MIR 127 208 -54 1519 219 7 3 chr5 23357322 23357614 -179727918 + AluJb SINE Alu 2 294 -18 21 57 0 0 chr5 23358497 23358532 -179727000 + AT_rich Low_complexity Low_complexity 1 35 0 1959 133 0 3 chr5 23358714 23359030 -179726502 - AluSg SINE Alu 0 315 1 22 0 0 0 chr5 23359923 23359945 -179725587 + AT_rich Low_complexity Low_complexity 1 22 0 1475 158 3 108 chr5 23361724 23362059 -179723473 - AluJb SINE Alu -2 300 1 1262 317 129 27 chr5 23362635 23363678 -179721854 + L2 LINE L2 1732 2881 -433 1291 198 19 64 chr5 23363875 23364189 -179721343 + MLT1B LTR MaLR 87 386 -4 23 78 0 0 chr5 23364509 23364560 -179720972 + AT_rich Low_complexity Low_complexity 1 51 0 2098 129 3 0 chr5 23365213 23365516 -179720016 - AluY SINE Alu -7 304 1 686 242 14 14 chr5 23366285 23366504 -179719028 + L1M4 LINE L1 4362 4580 -1566 1113 134 17 12 chr5 23366504 23366676 -179718856 - MER1B DNA MER1_type 0 339 167 2311 144 13 3 chr5 23366881 23367270 -179718262 + L1MC1 LINE L1 5936 6328 -5 25 65 0 0 chr5 23367996 23368042 -179717490 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr5 23368355 23368377 -179717155 + AT_rich Low_complexity Low_complexity 1 22 0 2310 180 80 4 chr5 23369460 23369937 -179715595 + MER67D LTR ERV1 2 514 0 25 75 0 0 chr5 23371686 23371739 -179713793 + AT_rich Low_complexity Low_complexity 1 53 0 279 198 55 33 chr5 23372055 23372146 -179713386 + L1MB3 LINE L1 6090 6182 -1 27 0 0 0 chr5 23372312 23372339 -179713193 + AT_rich Low_complexity Low_complexity 1 27 0 1083 254 40 4 chr5 23372920 23373172 -179712360 + Tigger7 DNA MER2_type 3 263 -470 306 207 17 0 chr5 23373174 23373232 -179712300 + Tigger7 DNA MER2_type 2433 2491 0 30 59 0 0 chr5 23373364 23373415 -179712117 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr5 23373526 23373549 -179711983 + AT_rich Low_complexity Low_complexity 1 23 0 202 281 158 0 chr5 23373685 23373767 -179711765 + L3b LINE CR1 1195 1289 -294 29 78 0 0 chr5 23374177 23374241 -179711291 + AT_rich Low_complexity Low_complexity 1 64 0 2648 29 0 0 chr5 23374817 23375128 -179710404 + AluYa5 SINE Alu 1 311 0 343 224 9 0 chr5 23375642 23375874 -179709658 + (TA)n Simple_repeat Simple_repeat 1 234 0 1418 150 16 8 chr5 23375997 23376320 -179709212 - L1M1 LINE L1 -743 5403 5194 2040 134 42 25 chr5 23376445 23376802 -179708730 - THE1B LTR MaLR 0 364 2 434 304 139 22 chr5 23377082 23377441 -179708091 - L1MC/D LINE L1 -2144 5664 5264 1376 149 5 111 chr5 23377567 23377709 -179707823 - L1M1 LINE L1 -530 5775 5691 1959 141 10 0 chr5 23377709 23378015 -179707517 - AluSc SINE Alu 0 309 1 1376 149 5 111 chr5 23378015 23378215 -179707317 - L1M1 LINE L1 -614 5691 5471 25 51 0 0 chr5 23378607 23378646 -179706886 + AT_rich Low_complexity Low_complexity 1 39 0 2227 107 7 7 chr5 23379009 23379319 -179706213 - AluSx SINE Alu -2 310 1 22 56 0 0 chr5 23381082 23381118 -179704414 + AT_rich Low_complexity Low_complexity 1 36 0 2690 149 32 17 chr5 23381458 23381927 -179703605 - Tigger1 DNA MER2_type 0 2418 1943 2057 195 71 2 chr5 23381927 23382322 -179703210 + MSTA LTR MaLR 1 422 -6 10875 147 19 29 chr5 23382329 23382818 -179702714 - Tigger1 DNA MER2_type -473 1945 1453 1935 113 25 0 chr5 23382818 23383119 -179702413 - AluSx SINE Alu 0 308 1 10875 147 19 29 chr5 23383119 23384096 -179701436 - Tigger1 DNA MER2_type -965 1453 499 2120 117 3 3 chr5 23384096 23384395 -179701137 - AluSp SINE Alu -13 300 2 10875 147 19 29 chr5 23384395 23384861 -179700671 - Tigger1 DNA MER2_type -1919 499 30 22 56 0 0 chr5 23385038 23385074 -179700458 + AT_rich Low_complexity Low_complexity 1 36 0 1880 84 0 0 chr5 23386843 23387082 -179698450 - AluSg/x SINE Alu -6 304 66 1205 166 34 126 chr5 23388166 23388329 -179697203 - AluJb SINE Alu -6 296 176 2024 144 0 0 chr5 23388329 23388634 -179696898 - AluSx SINE Alu -7 305 1 1205 166 34 126 chr5 23388634 23388796 -179696736 - AluJb SINE Alu -126 176 1 180 307 123 26 chr5 23389872 23389986 -179695546 + MIR SINE MIR 16 140 -122 237 159 0 0 chr5 23391461 23391505 -179694027 + CT-rich Low_complexity Low_complexity 2 45 0 4797 131 27 67 chr5 23393601 23394517 -179691015 + THE1-int LTR MaLR 267 1146 -434 525 76 0 0 chr5 23394516 23394595 -179690937 - L1PBa LINE L1 -4427 2436 2358 * 365 295 14 7 chr5 23395107 23395246 -179690286 - L1ME LINE L1 -365 5805 5666 425 339 148 23 chr5 23395926 23396499 -179689033 + L3 LINE CR1 579 1223 -354 2102 120 3 0 chr5 23396850 23397170 -179688362 - AluSx SINE Alu 0 323 3 305 283 109 18 chr5 23397193 23397416 -179688116 - L1ME3A LINE L1 -302 5868 5616 439 294 80 54 chr5 23397924 23398486 -179687046 - L1MEd LINE L1 -4772 1497 946 5225 38 3 0 chr5 23398636 23399263 -179686269 + L1PA5 LINE L1 5517 6145 -9 26 0 0 0 chr5 23399263 23399289 -179686243 + AT_rich Low_complexity Low_complexity 1 26 0 1299 190 149 31 chr5 23399568 23399608 -179685924 + MSTD LTR MaLR 38 72 -324 2109 104 37 13 chr5 23399608 23399906 -179685626 - AluSq SINE Alu -8 305 1 1299 190 149 31 chr5 23399906 23400186 -179685346 + MSTD LTR MaLR 72 396 0 407 330 65 33 chr5 23400254 23400530 -179685002 + LTR33 LTR ERVL 235 519 -2 379 190 27 15 chr5 23400618 23400889 -179684643 + (TA)n Simple_repeat Simple_repeat 1 274 0 494 341 51 20 chr5 23401478 23401733 -179683799 + L2 LINE L2 1443 1705 -1609 193 195 0 24 chr5 23401902 23401943 -179683589 + L3 LINE CR1 1441 1480 -97 641 297 113 63 chr5 23402196 23402738 -179682794 + L2 LINE L2 1776 2344 -970 610 191 20 7 chr5 23402742 23402889 -179682643 + L1MC3 LINE L1 7636 7784 -1 2090 113 37 0 chr5 23405529 23405829 -179679703 + AluSx SINE Alu 1 311 -1 249 318 69 42 chr5 23406023 23406212 -179679320 + L2 LINE L2 2221 2414 -900 420 294 14 65 chr5 23406386 23406600 -179678932 - MLT1K LTR MaLR -3 585 383 209 286 0 0 chr5 23407345 23407394 -179678138 + L2 LINE L2 3255 3303 -10 2386 74 3 3 chr5 23408565 23408686 -179676846 + AluY SINE Alu 1 121 -190 209 30 61 0 chr5 23408686 23408719 -179676813 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2386 74 3 3 chr5 23408719 23408907 -179676625 + AluY SINE Alu 120 310 -1 2084 120 0 13 chr5 23408925 23409224 -179676308 + AluSq SINE Alu 1 295 -18 206 121 0 0 chr5 23409822 23409855 -179675677 + (TAAAA)n Simple_repeat Simple_repeat 1 33 0 209 286 54 62 chr5 23410217 23410329 -179675203 + L2 LINE L2 2915 3025 -288 267 220 10 160 chr5 23410392 23410492 -179675040 + L2 LINE L2 3186 3270 -2 1890 149 68 11 chr5 23411013 23411368 -179674164 + THE1C LTR MaLR 1 375 0 209 323 96 30 chr5 23411845 23412043 -179673489 + L2 LINE L2 2258 2468 -846 539 292 92 26 chr5 23412822 23413017 -179672515 + MIR SINE MIR 27 234 -28 23 0 0 0 chr5 23413913 23413936 -179671596 + AT_rich Low_complexity Low_complexity 1 23 0 727 114 18 0 chr5 23413962 23414076 -179671456 - L1PA13 LINE L1 -18 6145 6030 610 100 11 0 chr5 23414076 23414166 -179671366 + L1PA12 LINE L1 5893 5983 -185 1231 304 154 14 chr5 23416082 23416867 -179668665 - L2 LINE L2 -942 2372 1478 1133 221 32 39 chr5 23417765 23418120 -179667412 + MLT2D LTR ERVL 2 408 -6 1961 137 64 19 chr5 23419131 23419490 -179666042 + THE1C LTR MaLR 1 375 0 3855 131 65 0 chr5 23419491 23420086 -179665446 + THE1C-int LTR MaLR 2 635 -945 2514 94 11 0 chr5 23420086 23420437 -179665095 - THE1A LTR MaLR 0 355 1 6236 129 18 15 chr5 23420437 23421384 -179664148 + THE1C-int LTR MaLR 631 1580 0 1816 148 93 6 chr5 23421384 23421729 -179663803 + THE1C LTR MaLR 1 375 0 522 316 130 33 chr5 23422748 23423109 -179662423 + MLT1J2 LTR MaLR 1 396 -54 317 362 67 37 chr5 23423863 23424161 -179661371 + L2 LINE L2 2217 2523 -791 248 328 69 9 chr5 23424273 23424389 -179661143 - LTR33 LTR ERVL -91 430 308 510 263 53 46 chr5 23424490 23424642 -179660890 - LTR33 LTR ERVL -358 163 11 194 222 111 71 chr5 23424869 23424968 -179660564 + L2 LINE L2 663 765 -2549 222 346 48 119 chr5 23426925 23427430 -179658102 - L2 LINE L2 0 3272 2804 558 184 0 0 chr5 23427490 23427577 -179657955 - Tigger7 DNA MER2_type 0 2487 2401 256 135 0 19 chr5 23427580 23427632 -179657900 - Tigger7 DNA MER2_type -1961 526 476 1229 218 39 18 chr5 23427633 23427913 -179657619 - Tigger7 DNA MER2_type -2201 286 1 206 206 15 29 chr5 23428373 23428441 -179657091 + A-rich Low_complexity Low_complexity 4 70 0 252 248 120 48 chr5 23428469 23428594 -179656938 + L1MC5 LINE L1 7010 7143 -818 216 241 0 35 chr5 23429343 23429401 -179656131 + (CATA)n Simple_repeat Simple_repeat 3 58 0 223 286 12 24 chr5 23429450 23429497 -179656035 + G-rich Low_complexity Low_complexity 4 51 -35 1662 201 27 56 chr5 23429497 23429644 -179655888 + MLT1A1 LTR MaLR 1 151 -214 1585 191 3 33 chr5 23429644 23429948 -179655584 - AluJo SINE Alu -17 295 1 1662 201 27 56 chr5 23429948 23430174 -179655358 + MLT1A1 LTR MaLR 151 363 -2 223 286 12 24 chr5 23430174 23430210 -179655322 + G-rich Low_complexity Low_complexity 51 86 0 201 125 0 0 chr5 23430759 23430791 -179654741 - MIR SINE MIR -112 150 119 2376 143 6 3 chr5 23431489 23431852 -179653680 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr5 23433003 23433031 -179652501 + AT_rich Low_complexity Low_complexity 1 28 0 636 304 122 61 chr5 23433111 23433679 -179651853 + L1M4 LINE L1 2382 2914 -3232 1424 259 72 13 chr5 23433679 23434154 -179651378 - MLT1D LTR MaLR 0 505 3 636 304 122 61 chr5 23434154 23434771 -179650761 + L1M4 LINE L1 2914 3635 -2511 267 195 134 0 chr5 23434942 23435024 -179650508 + L1MB8 LINE L1 1149 1241 -5301 14843 233 31 40 chr5 23435028 23435230 -179650302 + L1PA15 LINE L1 2 204 -6612 16487 48 5 1 chr5 23435230 23438088 -179647444 + L1PA5 LINE L1 3274 6147 -7 14843 233 31 40 chr5 23438088 23444381 -179641151 + L1PA15 LINE L1 204 6608 -208 2168 166 38 24 chr5 23444381 23444803 -179640729 - MSTA LTR MaLR 0 428 1 14843 233 31 40 chr5 23444803 23444990 -179640542 + L1PA15 LINE L1 6608 6795 -21 794 133 7 22 chr5 23444993 23445128 -179640404 + MSTA LTR MaLR 296 428 0 1755 254 33 52 chr5 23445161 23446090 -179639442 + L1MB8 LINE L1 1202 2099 -4547 25 0 0 0 chr5 23446145 23446170 -179639362 + AT_rich Low_complexity Low_complexity 1 25 0 1808 235 68 24 chr5 23446197 23446694 -179638838 + MLT2B1 LTR ERVL 1 519 -1 977 249 83 51 chr5 23446774 23447454 -179638078 + L1MB8 LINE L1 2363 3069 -3575 3225 219 45 47 chr5 23447457 23448414 -179637118 + L1MB8 LINE L1 4805 5761 -915 1957 115 7 4 chr5 23448414 23448717 -179636815 + AluSg SINE Alu 3 306 0 3225 219 45 47 chr5 23448717 23449631 -179635901 + L1MB8 LINE L1 5761 6675 -1 1982 177 43 33 chr5 23450905 23451449 -179634083 - MLT2A2 LTR ERVL 0 554 1 2147 73 0 3 chr5 23451570 23451856 -179633676 + AluY SINE Alu 24 308 -3 209 310 20 76 chr5 23451865 23452062 -179633470 - L2 LINE L2 -221 3051 2866 196 368 29 0 chr5 23452124 23452192 -179633340 + MIR SINE MIR 49 118 -90 189 107 0 0 chr5 23452205 23452233 -179633299 + (T)n Simple_repeat Simple_repeat 1 28 0 332 374 138 7 chr5 23453538 23453801 -179631731 + L2 LINE L2 2556 2783 -530 2078 203 49 79 chr5 23453801 23454372 -179631160 - MLT2B3 LTR ERVL 0 554 1 332 374 138 7 chr5 23454372 23454520 -179631012 + L2 LINE L2 2783 3017 -296 386 248 78 35 chr5 23454554 23454695 -179630837 + L2 LINE L2 3167 3313 0 23 0 0 0 chr5 23455446 23455469 -179630063 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr5 23456515 23456538 -179628994 + (T)n Simple_repeat Simple_repeat 1 23 0 12417 158 51 19 chr5 23456538 23458829 -179626703 + Tigger1 DNA MER2_type 55 2417 -1 257 266 65 78 chr5 23459724 23459878 -179625654 - MARNA DNA Mariner -358 228 77 336 343 41 30 chr5 23459893 23460062 -179625470 + MIR SINE MIR 15 185 -77 26 50 0 0 chr5 23460128 23460168 -179625364 + AT_rich Low_complexity Low_complexity 1 40 0 1160 254 58 29 chr5 23460176 23460519 -179625013 - MLT1A2 LTR MaLR -4 370 18 246 245 19 0 chr5 23461959 23462012 -179623520 - L2 LINE L2 -20 3252 3199 211 226 78 87 chr5 23463936 23464051 -179621481 + L2 LINE L2 3012 3125 -188 1771 154 26 47 chr5 23464074 23464457 -179621075 - THE1C LTR MaLR 0 375 1 563 141 45 58 chr5 23464488 23464644 -179620888 + L1MB7 LINE L1 6031 6184 0 966 337 106 33 chr5 23465943 23466587 -179618945 + L2 LINE L2 2129 2819 -495 198 0 0 0 chr5 23466771 23466793 -179618739 + (TTCC)n Simple_repeat Simple_repeat 1 22 0 711 146 26 32 chr5 23466797 23467062 -179618470 + CT-rich Low_complexity Low_complexity 1 263 0 2164 123 7 0 chr5 23467068 23467378 -179618154 - AluSq SINE Alu -1 312 1 1961 114 23 0 chr5 23467416 23467715 -179617817 - AluSp SINE Alu -2 311 6 339 407 66 4 chr5 23467909 23468167 -179617365 + L2 LINE L2 2493 2766 -548 1106 262 16 50 chr5 23469105 23469605 -179615927 + L1ME3 LINE L1 5295 5777 -385 826 155 8 0 chr5 23469645 23469774 -179615758 - AluJb SINE Alu -30 282 153 341 227 0 13 chr5 23469775 23469850 -179615682 - AluSp SINE Alu -106 197 124 349 284 96 57 chr5 23469858 23470201 -179615331 + L1ME3 LINE L1 5791 6160 -6 216 0 0 0 chr5 23470212 23470236 -179615296 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 449 250 39 0 chr5 23470953 23471057 -179614475 - MLT1D LTR MaLR -5 500 393 21 57 0 0 chr5 23471239 23471274 -179614258 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr5 23472323 23472356 -179613176 + AT_rich Low_complexity Low_complexity 1 33 0 277 233 41 0 chr5 23472475 23472548 -179612984 + (CATA)n Simple_repeat Simple_repeat 1 76 0 362 307 41 5 chr5 23472550 23472768 -179612764 - L1MC4 LINE L1 -122 7920 7695 22 0 0 0 chr5 23472869 23472891 -179612641 + AT_rich Low_complexity Low_complexity 1 22 0 1208 159 5 45 chr5 23473288 23473508 -179612024 - AluJb SINE Alu -99 213 3 21 0 0 0 chr5 23473643 23473664 -179611868 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr5 23474695 23474719 -179610813 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr5 23476855 23476883 -179608649 + AT_rich Low_complexity Low_complexity 1 28 0 1969 146 21 29 chr5 23477011 23477389 -179608143 - THE1C LTR MaLR 0 375 1 379 282 103 8 chr5 23477475 23477592 -179607940 - MIR SINE MIR -75 187 60 869 218 29 0 chr5 23477740 23477910 -179607622 - FAM SINE Alu 0 175 1 530 358 100 40 chr5 23478607 23479074 -179606458 + L2 LINE L2 2051 2566 -748 2542 36 0 3 chr5 23479074 23479380 -179606152 - AluY SINE Alu -6 305 1 530 358 100 40 chr5 23479380 23479533 -179605999 + L2 LINE L2 2566 2708 -606 186 341 93 66 chr5 23479641 23479867 -179605665 + L2 LINE L2 2736 2967 -347 372 243 142 20 chr5 23480034 23480182 -179605350 - MER52C LTR ERV1 -139 1139 974 411 160 75 0 chr5 23481035 23481141 -179604391 + L1PB4 LINE L1 6042 6155 -1 2214 147 106 3 chr5 23481187 23481574 -179603958 - MSTC LTR MaLR -1 427 1 183 204 0 0 chr5 23481638 23481682 -179603850 + CT-rich Low_complexity Low_complexity 2 45 0 * 242 106 21 0 chr5 23481677 23481724 -179603808 + (TC)n Simple_repeat Simple_repeat 2 49 0 666 212 45 18 chr5 23482198 23482377 -179603155 + MLT1J LTR MaLR 1 150 -259 241 260 68 48 chr5 23482487 23482633 -179602899 + MLT1L LTR MaLR 445 593 -22 222 37 0 0 chr5 23482961 23482988 -179602544 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 630 185 0 25 chr5 23482988 23483107 -179602425 - FLAM_C SINE Alu -25 118 3 23 0 0 0 chr5 23483507 23483530 -179602002 + AT_rich Low_complexity Low_complexity 1 23 0 1024 185 70 33 chr5 23483881 23484151 -179601381 - L1MA10 LINE L1 -1 6333 6054 640 286 58 0 chr5 23484203 23484392 -179601140 - MER20 DNA MER1_type 0 219 20 433 285 80 0 chr5 23484434 23484571 -179600961 - MLT1J1 LTR MaLR -266 180 33 480 102 66 6 chr5 23484796 23484962 -179600570 + (TA)n Simple_repeat Simple_repeat 1 176 0 1435 225 49 28 chr5 23485106 23485493 -179600039 + MSTD LTR MaLR 2 396 0 2085 135 79 15 chr5 23486960 23487300 -179598232 + THE1B LTR MaLR 3 364 0 6897 91 4 8 chr5 23487300 23488253 -179597279 + THE1B-int LTR MaLR 1 949 -631 1437 67 0 0 chr5 23488250 23488430 -179597102 + THE1B-int LTR MaLR 1391 1570 -10 * 1123 128 59 32 chr5 23488430 23488617 -179596915 + THE1B LTR MaLR 173 364 0 247 221 0 15 chr5 23488622 23488690 -179596842 + (TA)n Simple_repeat Simple_repeat 2 68 0 1470 197 18 82 chr5 23490021 23490411 -179595121 - MLT1A1 LTR MaLR 0 365 1 697 237 139 32 chr5 23490558 23490896 -179594636 - MLT1A2 LTR MaLR 0 374 1 862 47 0 0 chr5 23491156 23491263 -179594269 - THE1-int LTR MaLR -1207 373 267 880 215 38 10 chr5 23492548 23492757 -179592775 - L1MB1 LINE L1 -22 6167 5953 323 255 89 51 chr5 23492806 23492963 -179592569 + MIR SINE MIR 34 196 -66 912 206 38 10 chr5 23495455 23495664 -179589868 - L1MB1 LINE L1 -22 6167 5953 276 341 116 12 chr5 23497674 23497847 -179587685 + MIR SINE MIR 24 214 -48 255 278 63 63 chr5 23497936 23498127 -179587405 - MIR SINE MIR -58 204 14 23 0 0 0 chr5 23498487 23498510 -179587022 + AT_rich Low_complexity Low_complexity 1 23 0 324 0 0 0 chr5 23498752 23498788 -179586744 + (TG)n Simple_repeat Simple_repeat 2 37 0 1428 93 4 18 chr5 23501691 23501916 -179583616 - L1MA1 LINE L1 -3 6299 6078 3403 218 60 17 chr5 23502623 23502765 -179582767 - L1MB8 LINE L1 -1 6177 6043 2115 116 0 3 chr5 23502765 23503057 -179582475 - AluSc SINE Alu -17 292 2 3403 218 60 17 chr5 23503057 23504149 -179581383 - L1MB8 LINE L1 -135 6043 4900 345 263 15 80 chr5 23504174 23504311 -179581221 + MIR SINE MIR 108 235 -27 2073 138 0 0 chr5 23504536 23504840 -179580692 + AluSc SINE Alu 1 304 -5 1709 168 0 23 chr5 23504928 23505237 -179580295 - AluJb SINE Alu -10 302 1 25 65 0 0 chr5 23507220 23507266 -179578266 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr5 23507385 23507410 -179578122 + AT_rich Low_complexity Low_complexity 1 25 0 307 350 186 4 chr5 23507807 23508087 -179577445 - L3 LINE CR1 0 1577 1247 437 314 116 5 chr5 23508359 23508566 -179576966 - L3 LINE CR1 -368 1209 980 222 237 130 21 chr5 23508920 23509037 -179576495 + MIR SINE MIR 43 174 -88 269 263 13 0 chr5 23509359 23509435 -179576097 + GA-rich Low_complexity Low_complexity 4 80 0 1752 189 117 8 chr5 23509498 23509884 -179575648 + MSTB1 LTR MaLR 1 428 -4 658 203 0 15 chr5 23510530 23510663 -179574869 - FLAM_A SINE Alu -2 140 10 259 352 0 9 chr5 23510765 23510870 -179574662 - L2 LINE L2 0 3313 3210 204 40 0 0 chr5 23511454 23511479 -179574053 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1233 163 5 5 chr5 23511481 23511683 -179573849 - AluJo SINE Alu -30 282 81 226 222 0 0 chr5 23512296 23512359 -179573173 - L1MC4 LINE L1 -1339 6703 6641 4274 72 5 12 chr5 23512359 23512944 -179572588 - L1PA8 LINE L1 -13 6159 5579 929 124 39 0 chr5 23512947 23513100 -179572432 + L1P LINE L1 4793 4951 -1195 23 0 0 0 chr5 23513101 23513124 -179572408 + AT_rich Low_complexity Low_complexity 1 23 0 2408 59 0 10 chr5 23513610 23513915 -179571617 + AluY SINE Alu 1 302 -9 23 33 0 0 chr5 23514078 23514108 -179571424 + AT_rich Low_complexity Low_complexity 1 30 0 2391 55 0 13 chr5 23514813 23515125 -179570407 + AluY SINE Alu 1 308 -3 1189 229 98 33 chr5 23515211 23515577 -179569955 + MLT1B LTR MaLR 1 390 0 2243 111 3 0 chr5 23515650 23515948 -179569584 - AluSq SINE Alu -14 299 1 531 0 0 0 chr5 23516204 23516263 -179569269 + (TA)n Simple_repeat Simple_repeat 1 59 0 315 0 0 0 chr5 23516263 23516298 -179569234 + (TG)n Simple_repeat Simple_repeat 1 35 0 1763 165 32 3 chr5 23517420 23517705 -179567827 + AluSx SINE Alu 1 293 -19 310 350 68 38 chr5 23517991 23518391 -179567141 + MLT1L LTR MaLR 175 586 -29 483 331 124 0 chr5 23518541 23518807 -179566725 + L2 LINE L2 2127 2425 -889 198 312 111 75 chr5 23518846 23519125 -179566407 + L2 LINE L2 2606 2894 -420 200 337 48 53 chr5 23519440 23519627 -179565905 + L2 LINE L2 3090 3275 -38 214 292 28 0 chr5 23522524 23522596 -179562936 + (TATATG)n Simple_repeat Simple_repeat 1 74 0 297 0 0 0 chr5 23522657 23522690 -179562842 + (CA)n Simple_repeat Simple_repeat 2 34 0 197 353 0 14 chr5 23522745 23522826 -179562706 - MIR SINE MIR -58 150 70 357 62 0 0 chr5 23523017 23523065 -179562467 + (CA)n Simple_repeat Simple_repeat 2 49 0 27 49 0 0 chr5 23524009 23524050 -179561482 + AT_rich Low_complexity Low_complexity 1 41 0 359 293 157 15 chr5 23524129 23524327 -179561205 - L1ME LINE L1 -313 5808 5583 23 0 0 0 chr5 23525188 23525211 -179560321 + AT_rich Low_complexity Low_complexity 1 23 0 180 372 12 12 chr5 23525762 23525848 -179559684 - L2 LINE L2 -13 3300 3215 248 301 68 8 chr5 23526887 23527020 -179558512 + L1M4 LINE L1 2448 2588 -3558 24 0 0 0 chr5 23527020 23527044 -179558488 + AT_rich Low_complexity Low_complexity 1 24 0 206 327 0 0 chr5 23529609 23529664 -179555868 + L2 LINE L2 3200 3254 -18 23 0 0 0 chr5 23529928 23529951 -179555581 + AT_rich Low_complexity Low_complexity 1 23 0 525 340 15 30 chr5 23530140 23530402 -179555130 - MIR SINE MIR -3 259 2 542 247 52 72 chr5 23530625 23530684 -179554848 + MIR SINE MIR 41 100 -162 2209 111 0 7 chr5 23530684 23530991 -179554541 - AluSc SINE Alu -4 305 1 542 247 52 72 chr5 23530991 23531125 -179554407 + MIR SINE MIR 100 230 -32 207 324 42 0 chr5 23532960 23533031 -179552501 - L2 LINE L2 -2 3311 3238 1725 109 7 29 chr5 23533106 23533381 -179552151 + AluSg SINE Alu 38 306 -4 2076 144 0 0 chr5 23533392 23533698 -179551834 + AluSx SINE Alu 1 306 -6 5507 150 62 64 chr5 23533829 23535063 -179550469 + Tigger3b DNA MER2_type 1 1231 0 981 262 63 77 chr5 23536100 23536706 -179548826 + MER77 LTR ERV1 119 679 -4 335 131 33 0 chr5 23537395 23537456 -179548076 + LTR60 LTR ERV1 1 63 -523 230 0 33 0 chr5 23537569 23537599 -179547933 + (CA)n Simple_repeat Simple_repeat 2 32 0 1727 147 41 80 chr5 23537633 23538021 -179547511 + THE1C LTR MaLR 1 373 -2 3831 110 79 90 chr5 23538025 23538806 -179546726 + THE1C-int LTR MaLR 3 775 -805 2451 109 0 62 chr5 23538783 23539215 -179546317 + THE1C-int LTR MaLR 1176 1580 0 * 1886 144 61 25 chr5 23539215 23539577 -179545955 + THE1C LTR MaLR 1 375 0 201 340 70 10 chr5 23539715 23539815 -179545717 + L2 LINE L2 3137 3242 -30 469 345 11 6 chr5 23541512 23541686 -179543846 - MIR SINE MIR -75 187 13 32 26 0 0 chr5 23541758 23541797 -179543735 + AT_rich Low_complexity Low_complexity 1 39 0 3160 109 4 0 chr5 23541797 23542266 -179543266 - L1PB2 LINE L1 0 6151 5681 309 293 89 0 chr5 23542268 23542391 -179543141 - L1ME LINE L1 -293 5828 5695 32 43 0 0 chr5 23542417 23542463 -179543069 + AT_rich Low_complexity Low_complexity 1 46 0 186 284 99 25 chr5 23542669 23542750 -179542782 + MIR SINE MIR 48 134 -128 511 123 0 0 chr5 23543046 23543119 -179542413 - MLT1A1 LTR MaLR 0 365 293 930 160 0 0 chr5 23543166 23543310 -179542222 - MLT1A1 LTR MaLR -221 144 1 2554 194 36 1 chr5 23543469 23544242 -179541290 - L1MC3 LINE L1 0 7785 5428 21 36 0 0 chr5 23544925 23544953 -179540579 + AT_rich Low_complexity Low_complexity 1 28 0 409 254 110 44 chr5 23545244 23545630 -179539902 - L1MEc LINE L1 -4554 1878 1501 325 235 18 123 chr5 23545761 23545931 -179539601 - L1MEc LINE L1 -5136 1273 1122 21 0 0 0 chr5 23546135 23546156 -179539376 + AT_rich Low_complexity Low_complexity 1 21 0 835 249 39 53 chr5 23546278 23546563 -179538969 - MLT1A1 LTR MaLR -84 281 1 679 254 69 78 chr5 23546687 23547201 -179538331 - MLT1E1 LTR MaLR -10 644 1 349 336 78 33 chr5 23547377 23547621 -179537911 + MIR SINE MIR 8 262 0 216 67 0 0 chr5 23547801 23547831 -179537701 + (CAA)n Simple_repeat Simple_repeat 2 31 0 383 282 50 77 chr5 23548692 23548873 -179536659 + MER5B DNA MER1_type 3 178 0 1955 192 0 26 chr5 23549664 23550054 -179535478 - MLT1B LTR MaLR -7 383 4 202 216 0 0 chr5 23550054 23550091 -179535441 + (TATATG)n Simple_repeat Simple_repeat 4 40 0 279 0 0 0 chr5 23550091 23550122 -179535410 + (CA)n Simple_repeat Simple_repeat 2 32 0 1654 223 58 24 chr5 23550126 23550538 -179534994 + MLT1C LTR MaLR 42 467 0 23 54 0 0 chr5 23550567 23550604 -179534928 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr5 23550880 23550907 -179534625 + AT_rich Low_complexity Low_complexity 1 27 0 363 311 56 22 chr5 23551635 23551815 -179533717 + MIR SINE MIR 31 216 -46 181 340 52 26 chr5 23552403 23552556 -179532976 + MIR SINE MIR 106 262 0 319 322 49 28 chr5 23552645 23552788 -179532744 + MIR SINE MIR 21 166 -96 28 29 0 0 chr5 23553031 23553066 -179532466 + AT_rich Low_complexity Low_complexity 1 35 0 1311 140 48 40 chr5 23555033 23555283 -179530249 + THE1B LTR MaLR 113 364 0 5279 134 5 0 chr5 23555283 23556084 -179529448 + THE1B-int LTR MaLR 1 805 -775 257 267 47 0 chr5 23556186 23556272 -179529260 + MLT1D LTR MaLR 163 252 -253 197 62 0 31 chr5 23556279 23556311 -179529221 + (TA)n Simple_repeat Simple_repeat 1 31 0 361 189 22 0 chr5 23556846 23556936 -179528596 + (TA)n Simple_repeat Simple_repeat 2 93 0 234 75 100 0 chr5 23557087 23557127 -179528405 - L1MA6 LINE L1 -349 5951 5908 2754 179 30 4 chr5 23557298 23557858 -179527674 - L1MA6 LINE L1 -401 5899 5325 1703 174 41 41 chr5 23558073 23558436 -179527096 + MLT1A1 LTR MaLR 1 363 -2 21 0 0 0 chr5 23558558 23558579 -179526953 + AT_rich Low_complexity Low_complexity 1 21 0 316 273 159 15 chr5 23558833 23558965 -179526567 + MIR SINE MIR 73 223 -39 21 0 0 0 chr5 23559409 23559430 -179526102 + AT_rich Low_complexity Low_complexity 1 21 0 237 186 72 41 chr5 23559461 23559558 -179525974 + Charlie1 DNA MER1_type 2575 2674 -87 34 65 0 0 chr5 23559805 23559867 -179525665 + AT_rich Low_complexity Low_complexity 1 62 0 574 186 0 0 chr5 23559867 23559969 -179525563 - FLAM_A SINE Alu -23 119 18 237 255 0 0 chr5 23560054 23560105 -179525427 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 524 305 68 39 chr5 23560247 23560639 -179524893 + L1MC/D LINE L1 5258 5664 -747 5352 168 46 7 chr5 23561044 23562102 -179523430 + L1MA4 LINE L1 5196 6289 -11 29 0 0 0 chr5 23562102 23562131 -179523401 + AT_rich Low_complexity Low_complexity 1 29 0 231 368 9 9 chr5 23563492 23563606 -179521926 - MIR3 SINE MIR -6 202 89 2073 84 0 11 chr5 23564082 23564410 -179521122 - AluY SINE Alu 0 325 1 260 253 27 0 chr5 23564514 23564589 -179520943 - MER67D LTR ERV1 -4 510 434 * 781 284 125 17 chr5 23564563 23564915 -179520617 - MER31B LTR ERV1 -76 390 1 227 167 24 0 chr5 23565029 23565071 -179520461 - MLT1J LTR MaLR -336 175 133 472 232 146 40 chr5 23565544 23565846 -179519686 - MER69 DNA AcHobo -6 2520 2187 228 214 36 24 chr5 23565905 23565989 -179519543 - MER69 DNA AcHobo -449 2077 1993 * 439 293 38 0 chr5 23565975 23566108 -179519424 - MER69 DNA AcHobo -1861 665 528 2223 90 0 13 chr5 23566172 23566473 -179519059 - AluY SINE Alu -14 297 1 18263 29 3 0 chr5 23566589 23568856 -179516676 - L1P1 LINE L1 -680 5475 3203 932 152 91 0 chr5 23568856 23569021 -179516511 - THE1B LTR MaLR -183 181 2 408 125 0 0 chr5 23569251 23569315 -179516217 + (TA)n Simple_repeat Simple_repeat 2 65 0 228 152 0 0 chr5 23569315 23569361 -179516171 - LTR66 LTR ERVL -171 439 394 185 217 12 0 chr5 23569361 23569444 -179516088 + (TA)n Simple_repeat Simple_repeat 2 85 0 21 71 0 0 chr5 23569909 23569951 -179515581 + AT_rich Low_complexity Low_complexity 1 42 0 30 27 0 0 chr5 23570238 23570275 -179515257 + AT_rich Low_complexity Low_complexity 1 37 0 241 220 170 64 chr5 23572465 23572606 -179512926 - MLT1J1 LTR MaLR -22 424 269 256 257 14 0 chr5 23572998 23573068 -179512464 + MIR SINE MIR 89 159 -103 2208 115 0 0 chr5 23573514 23573818 -179511714 - AluSx SINE Alu -6 306 3 1643 267 83 20 chr5 23575329 23575835 -179509697 - MLT1E LTR MaLR -30 563 26 836 281 32 5 chr5 23576758 23576979 -179508553 + MER45R DNA AcHobo 1 227 -1354 250 154 0 0 chr5 23577054 23577093 -179508439 + AluJ/FLAM SINE Alu 20 58 -244 343 342 40 7 chr5 23577299 23577448 -179508084 + LTR33 LTR ERVL 12 165 -356 233 224 106 75 chr5 23577515 23577676 -179507856 + LTR33 LTR ERVL 304 469 -52 300 200 0 0 chr5 23578130 23578200 -179507332 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 255 272 0 22 chr5 23578202 23578294 -179507238 + L1MC4 LINE L1 6614 6703 -1339 492 146 0 0 chr5 23578301 23578390 -179507142 + (TATG)n Simple_repeat Simple_repeat 4 92 0 225 0 0 0 chr5 23578394 23578419 -179507113 + (CA)n Simple_repeat Simple_repeat 2 26 0 1413 179 10 34 chr5 23578423 23578720 -179506812 - AluJo SINE Alu -10 302 13 30 27 0 0 chr5 23579709 23579746 -179505786 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr5 23579877 23579900 -179505632 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr5 23580106 23580144 -179505388 + AT_rich Low_complexity Low_complexity 1 38 0 1854 128 19 29 chr5 23580419 23580731 -179504801 + AluSc SINE Alu 1 309 0 3092 144 55 48 chr5 23581236 23581834 -179503698 + MER7C DNA MER2_type 1 602 0 6897 58 4 14 chr5 23582221 23582674 -179502858 + L1PA7 LINE L1 5020 5476 -678 2636 23 0 7 chr5 23582674 23582978 -179502554 + AluY SINE Alu 1 302 -9 6897 58 4 14 chr5 23582978 23583667 -179501865 + L1PA7 LINE L1 5476 6153 -1 459 312 15 7 chr5 23584169 23584339 -179501193 - L1MC/D LINE L1 -528 5638 5486 1570 209 42 35 chr5 23584516 23584917 -179500615 + MLT2C2 LTR ERVL 1 404 -60 1127 246 88 33 chr5 23585433 23585831 -179499701 - LTR52 LTR ERVL 0 421 2 402 294 47 58 chr5 23586561 23586836 -179498696 + L1MEd LINE L1 495 766 -5353 2482 50 3 0 chr5 23586907 23587206 -179498326 + AluY SINE Alu 1 300 -11 225 0 0 0 chr5 23587638 23587663 -179497869 + (TA)n Simple_repeat Simple_repeat 1 25 0 4167 183 32 15 chr5 23588045 23588920 -179496612 + L1MC1 LINE L1 5444 6333 0 210 256 37 0 chr5 23589461 23589543 -179495989 + (TATG)n Simple_repeat Simple_repeat 4 88 0 1407 214 0 11 chr5 23590156 23590465 -179495067 - AluJb SINE Alu 0 309 4 268 144 72 41 chr5 23590764 23590861 -179494671 - Charlie1 DNA MER1_type -87 2674 2575 21 0 0 0 chr5 23590892 23590913 -179494619 + AT_rich Low_complexity Low_complexity 1 21 0 307 290 160 8 chr5 23591357 23591488 -179494044 - MIR SINE MIR -39 223 73 21 0 0 0 chr5 23591742 23591763 -179493769 + AT_rich Low_complexity Low_complexity 1 21 0 1639 172 44 52 chr5 23591885 23592251 -179493281 - MLT1A1 LTR MaLR -2 363 1 2702 10 0 10 chr5 23592479 23592793 -179492739 + AluYa5 SINE Alu 1 311 0 2933 159 29 4 chr5 23592794 23593347 -179492185 + L1MA6 LINE L1 5333 5899 -401 234 75 100 0 chr5 23593518 23593558 -179491974 + L1MA6 LINE L1 5908 5951 -349 361 189 22 0 chr5 23593709 23593799 -179491733 + (TA)n Simple_repeat Simple_repeat 2 93 0 197 62 0 31 chr5 23594334 23594366 -179491166 + (TA)n Simple_repeat Simple_repeat 1 31 0 1104 215 18 0 chr5 23594373 23594596 -179490936 - MLT1D LTR MaLR -253 252 26 642 370 95 7 chr5 23595891 23596343 -179489189 + L3 LINE CR1 665 1156 -421 2168 109 0 3 chr5 23596913 23597215 -179488317 + AluSq SINE Alu 2 302 -11 1773 160 41 39 chr5 23597361 23597724 -179487808 + THE1B LTR MaLR 1 364 0 27 62 0 0 chr5 23598635 23598683 -179486849 + AT_rich Low_complexity Low_complexity 1 48 0 240 266 37 83 chr5 23598701 23598810 -179486722 + L3 LINE CR1 1242 1345 -232 32 57 0 0 chr5 23599426 23599479 -179486053 + AT_rich Low_complexity Low_complexity 1 53 0 241 270 0 0 chr5 23600101 23600164 -179485368 + T-rich Low_complexity Low_complexity 1 63 0 277 217 46 23 chr5 23600560 23600735 -179484797 + (TA)n Simple_repeat Simple_repeat 2 180 0 32 43 0 0 chr5 23600756 23600802 -179484730 + AT_rich Low_complexity Low_complexity 1 46 0 731 276 151 23 chr5 23601272 23601640 -179483892 + MLT1F1 LTR MaLR 39 452 -115 48 32 0 0 chr5 23601673 23601735 -179483797 + AT_rich Low_complexity Low_complexity 1 62 0 252 258 0 15 chr5 23601738 23601804 -179483728 + MLT1F1 LTR MaLR 478 542 0 280 306 0 0 chr5 23602014 23602099 -179483433 + (AATAG)n Simple_repeat Simple_repeat 4 88 0 257 0 30 0 chr5 23602145 23602178 -179483354 + (TG)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr5 23602283 23602304 -179483228 + AT_rich Low_complexity Low_complexity 1 21 0 1855 131 0 4 chr5 23602330 23602597 -179482935 + AluSq SINE Alu 46 311 -2 414 294 36 31 chr5 23602669 23602968 -179482564 - MER68 LTR ERV1 -199 363 1 3072 132 7 0 chr5 23602996 23603460 -179482072 - L1PA13 LINE L1 -177 5986 5520 1695 195 7 0 chr5 23603487 23603790 -179481742 + AluJb SINE Alu 1 305 -7 275 269 112 30 chr5 23604367 23604564 -179480968 + MER113 DNA MER1_type? 67 279 -242 1824 160 55 25 chr5 23606693 23607055 -179478477 - THE1C LTR MaLR -2 373 1 2346 131 15 32 chr5 23607055 23607459 -179478073 - THE1C-int LTR MaLR 0 1580 1184 339 218 0 0 chr5 23608530 23608584 -179476948 - AluJ/FRAM SINE Alu -20 282 229 1287 80 0 0 chr5 23608584 23608746 -179476786 + THE1C LTR MaLR 1 162 -213 1442 194 3 41 chr5 23609153 23609207 -179476325 - AluJo SINE Alu -30 282 228 2303 134 5 18 chr5 23609207 23609587 -179475945 + THE1C LTR MaLR 1 375 0 1442 194 3 41 chr5 23609587 23609825 -179475707 - AluJo SINE Alu -84 228 1 1812 179 32 16 chr5 23610051 23610420 -179475112 - THE1C LTR MaLR 0 375 1 198 0 0 0 chr5 23610832 23610854 -179474678 + (TAAAAA)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chr5 23611162 23611197 -179474335 + AT_rich Low_complexity Low_complexity 1 35 0 1858 135 32 0 chr5 23611824 23612105 -179473427 + AluSx SINE Alu 1 290 -22 255 133 0 0 chr5 23612289 23612334 -179473198 + (CA)n Simple_repeat Simple_repeat 2 46 0 205 161 0 0 chr5 23613480 23613511 -179472021 + (CA)n Simple_repeat Simple_repeat 2 32 0 2632 82 3 3 chr5 23613801 23614156 -179471376 - THE1A LTR MaLR 0 355 1 21 0 0 0 chr5 23614180 23614201 -179471331 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr5 23614408 23614431 -179471101 + AT_rich Low_complexity Low_complexity 1 23 0 297 206 31 21 chr5 23614817 23614914 -179470618 + (TA)n Simple_repeat Simple_repeat 1 98 0 5241 174 25 8 chr5 23614938 23615141 -179470391 - L1PA16 LINE L1 -14 6152 5954 1970 116 65 34 chr5 23615141 23615494 -179470038 - THE1B LTR MaLR 0 364 1 5241 174 25 8 chr5 23615494 23617041 -179468491 - L1PA16 LINE L1 -212 5954 4375 492 306 71 37 chr5 23618217 23618485 -179467047 + L2 LINE L2 2873 3149 -164 498 278 32 0 chr5 23618633 23618759 -179466773 - MLT2D LTR ERVL -48 366 237 21 0 0 0 chr5 23618968 23618989 -179466543 + AT_rich Low_complexity Low_complexity 1 21 0 301 235 15 0 chr5 23619047 23619115 -179466417 + MIR3 SINE MIR 121 189 -19 364 237 80 27 chr5 23619191 23619316 -179466216 - MER90 LTR ERV1 0 614 445 2114 180 42 75 chr5 23620878 23621450 -179464082 - MLT2B3 LTR ERVL 0 554 2 189 263 26 66 chr5 23622111 23622187 -179463345 + L2 LINE L2 3193 3265 -7 24 0 0 0 chr5 23622694 23622718 -179462814 + AT_rich Low_complexity Low_complexity 1 24 0 1669 196 27 9 chr5 23623583 23623919 -179461613 + MER2 DNA MER2_type 3 344 0 345 293 104 21 chr5 23624041 23624635 -179460897 - L1ME2 LINE L1 -258 5906 5265 1499 242 35 12 chr5 23625617 23626047 -179459485 - L1MC4 LINE L1 -396 7646 7207 211 216 0 0 chr5 23626067 23626118 -179459414 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 402 288 133 51 chr5 23626133 23626449 -179459083 + L1MC4 LINE L1 7695 8036 -6 545 277 66 51 chr5 23627450 23627724 -179457808 - MER110 LTR ERV1 -48 443 166 228 244 13 39 chr5 23627801 23627879 -179457653 - MER110A LTR ERV1 -298 170 95 249 57 0 0 chr5 23628572 23628607 -179456925 + (TG)n Simple_repeat Simple_repeat 2 36 0 2302 110 0 0 chr5 23629829 23630139 -179455393 - AluSg SINE Alu 0 310 1 355 309 41 0 chr5 23630154 23630251 -179455281 - L2 LINE L2 -14 3299 3199 359 279 12 0 chr5 23630330 23630416 -179455116 - MER110 LTR ERV1 0 491 405 2058 181 38 20 chr5 23630416 23630815 -179454717 + MLT2D LTR ERVL 1 406 -8 848 289 63 38 chr5 23630819 23631213 -179454319 - MER110 LTR ERV1 -83 408 5 2264 95 0 0 chr5 23633563 23633857 -179451675 - AluSg1 SINE Alu -15 294 1 240 264 46 46 chr5 23634309 23634396 -179451136 - L2 LINE L2 -1 3312 3226 258 105 0 0 chr5 23634400 23634438 -179451094 + (T)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr5 23634566 23634588 -179450944 + AT_rich Low_complexity Low_complexity 1 22 0 387 245 108 22 chr5 23636511 23636650 -179448882 + L3b LINE CR1 1224 1374 -209 211 194 0 0 chr5 23636795 23636831 -179448701 + (TATG)n Simple_repeat Simple_repeat 4 39 0 632 301 79 86 chr5 23636879 23637085 -179448447 + L2 LINE L2 2615 2821 -492 1513 70 10 10 chr5 23637085 23637285 -179448247 - AluY SINE Alu -13 298 99 632 301 79 86 chr5 23637285 23637664 -179447868 + L2 LINE L2 2821 3199 -114 2590 26 0 10 chr5 23637664 23637977 -179447555 + AluYa5 SINE Alu 2 311 0 632 301 79 86 chr5 23637977 23638058 -179447474 + L2 LINE L2 3199 3279 -34 7242 45 0 6 chr5 23638791 23639725 -179445807 + L1PA4 LINE L1 5226 6154 -1 1049 118 59 38 chr5 23639726 23639912 -179445620 + THE1B LTR MaLR 175 364 0 1814 145 75 28 chr5 23639917 23640275 -179445257 + THE1C LTR MaLR 1 375 0 428 267 68 23 chr5 23640358 23640606 -179444926 + L1MDa LINE L1 1816 2044 -857 24 53 0 0 chr5 23640776 23640814 -179444718 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr5 23641031 23641054 -179444478 + AT_rich Low_complexity Low_complexity 1 23 0 723 288 53 109 chr5 23641435 23642372 -179443160 - L2 LINE L2 0 3313 2419 1882 144 47 39 chr5 23642384 23642745 -179442787 + THE1B LTR MaLR 1 364 0 6283 102 15 91 chr5 23642745 23643861 -179441671 + THE1B-int LTR MaLR 1 1031 -549 201 323 0 0 chr5 23643882 23643944 -179441588 - MIR SINE MIR -181 81 20 26 30 0 0 chr5 23644283 23644316 -179441216 + AT_rich Low_complexity Low_complexity 1 33 0 210 345 99 35 chr5 23644614 23644846 -179440686 + L3 LINE CR1 483 729 -848 259 356 51 8 chr5 23645475 23645593 -179439939 + MIR SINE MIR 4 126 -136 22 0 0 0 chr5 23646817 23646839 -179438693 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr5 23647077 23647113 -179438419 + AT_rich Low_complexity Low_complexity 1 36 0 372 22 0 0 chr5 23647677 23647722 -179437810 + (TG)n Simple_repeat Simple_repeat 2 46 0 1991 108 0 24 chr5 23647940 23648236 -179437296 + AluSg1 SINE Alu 1 289 -20 479 322 74 17 chr5 23648431 23648661 -179436871 + MIR SINE MIR 19 261 -1 22 0 0 0 chr5 23649249 23649271 -179436261 + AT_rich Low_complexity Low_complexity 1 22 0 199 186 0 43 chr5 23651142 23651212 -179434320 + A-rich Low_complexity Low_complexity 2 68 0 2171 118 0 22 chr5 23652523 23652862 -179432670 - AluSg SINE Alu 0 332 1 1559 152 57 30 chr5 23653473 23653769 -179431763 + AluJo SINE Alu 4 307 -5 1694 298 24 26 chr5 23654362 23654979 -179430553 + MLT2E LTR ERVL 11 626 -2 369 58 0 0 chr5 23655090 23655142 -179430390 + (TG)n Simple_repeat Simple_repeat 2 53 0 1716 164 11 14 chr5 23655143 23655430 -179430102 - AluSx SINE Alu -26 286 1 1810 118 16 26 chr5 23655806 23656111 -179429421 - AluSq SINE Alu -11 302 1 2084 99 13 16 chr5 23656730 23657033 -179428499 - AluSq SINE Alu -11 302 1 1774 148 0 14 chr5 23657487 23657784 -179427748 - AluSc SINE Alu 0 309 17 206 86 71 57 chr5 23657873 23657943 -179427589 + (TA)n Simple_repeat Simple_repeat 1 71 0 2096 292 129 20 chr5 23657951 23659153 -179426379 - L2 LINE L2 -13 3300 1967 312 27 0 0 chr5 23660992 23661029 -179424503 + (TG)n Simple_repeat Simple_repeat 1 37 0 181 152 22 65 chr5 23662840 23662886 -179422646 - L2 LINE L2 0 3272 3229 209 373 32 32 chr5 23662962 23663088 -179422444 - L2 LINE L2 -193 3120 2995 876 308 36 98 chr5 23663251 23663917 -179421615 - L2 LINE L2 -650 2664 2040 233 288 27 0 chr5 23663993 23664066 -179421466 - L1MC/D LINE L1 -2211 5597 5523 21 36 0 0 chr5 23665073 23665101 -179420431 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr5 23665610 23665638 -179419894 + AT_rich Low_complexity Low_complexity 1 28 0 1163 116 12 0 chr5 23665786 23665959 -179419573 - AluSg/x SINE Alu 0 312 138 535 339 117 31 chr5 23666450 23666896 -179418636 - L1MEc LINE L1 -721 1855 1325 22 56 0 0 chr5 23669725 23669761 -179415771 + AT_rich Low_complexity Low_complexity 1 36 0 819 251 16 11 chr5 23672814 23672997 -179412535 + MER5A DNA MER1_type 6 189 0 767 227 92 19 chr5 23673006 23673213 -179412319 + MER58A DNA MER1_type 2 223 -1 464 267 42 36 chr5 23673512 23673677 -179411855 + MLT1I LTR MaLR 244 409 0 200 284 102 0 chr5 23673906 23673994 -179411538 - L2 LINE L2 -559 2755 2659 255 281 0 0 chr5 23674445 23674509 -179411023 - MLT1I LTR MaLR -242 167 104 227 240 104 10 chr5 23674966 23675062 -179410470 - LTR16C LTR ERVL -133 358 254 1854 171 3 0 chr5 23675377 23675686 -179409846 + AluSx SINE Alu 1 310 -2 235 324 139 0 chr5 23675929 23676037 -179409495 - MIR SINE MIR -14 248 126 184 148 11 227 chr5 23676726 23676789 -179408743 - MIR SINE MIR -57 151 110 2251 103 0 3 chr5 23676789 23677089 -179408443 + AluSx SINE Alu 5 303 -9 184 148 11 227 chr5 23677089 23677113 -179408419 - MIR SINE MIR -98 110 83 356 157 68 20 chr5 23677591 23677738 -179407794 + (TA)n Simple_repeat Simple_repeat 2 155 0 21 0 0 0 chr5 23677738 23677759 -179407773 + AT_rich Low_complexity Low_complexity 1 21 0 224 339 68 31 chr5 23679573 23679765 -179405767 + L3 LINE CR1 845 1043 -534 353 326 54 0 chr5 23679794 23679923 -179405609 + L3 LINE CR1 1211 1346 -231 266 127 0 48 chr5 23680007 23680070 -179405462 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 2347 241 92 23 chr5 23680236 23681474 -179404058 - L1ME1 LINE L1 -6 6160 4850 202 262 49 0 chr5 23682421 23682482 -179403050 + A-rich Low_complexity Low_complexity 2 65 0 286 297 0 33 chr5 23682741 23682832 -179402700 + MLT1H LTR MaLR 455 542 -7 2050 129 0 3 chr5 23683090 23683393 -179402139 - AluSq SINE Alu -11 302 1 362 345 100 31 chr5 23687256 23687575 -179397957 + L3 LINE CR1 318 658 -919 780 332 18 25 chr5 23688916 23689193 -179396339 + LTR16A LTR ERVL 167 441 -9 345 47 0 0 chr5 23689213 23689256 -179396276 + (CA)n Simple_repeat Simple_repeat 2 44 0 312 314 139 25 chr5 23689666 23689911 -179395621 - MLT1J1 LTR MaLR -173 273 1 663 195 12 41 chr5 23690503 23690672 -179394860 - L1MB2 LINE L1 -17 6154 5991 2148 74 19 42 chr5 23691091 23691400 -179394132 - AluY SINE Alu -3 308 7 764 253 82 17 chr5 23691579 23691884 -179393648 - MSTD LTR MaLR -27 368 1 2311 86 0 13 chr5 23692037 23692338 -179393194 + AluY SINE Alu 1 297 -14 430 293 38 0 chr5 23692402 23692535 -179392997 + MER69 DNA AcHobo 528 665 -1861 444 212 119 38 chr5 23692664 23692966 -179392566 + MER69 DNA AcHobo 2187 2520 -6 232 368 9 9 chr5 23693538 23693652 -179391880 + MIR3 SINE MIR 89 202 -6 29 0 0 0 chr5 23695011 23695040 -179390492 + AT_rich Low_complexity Low_complexity 1 29 0 5297 168 46 7 chr5 23695040 23696098 -179389434 - L1MA4 LINE L1 -11 6289 5196 517 308 71 41 chr5 23696503 23696895 -179388637 - L1MB2 LINE L1 -747 5612 5258 237 255 0 0 chr5 23697037 23697088 -179388444 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 586 186 0 0 chr5 23697173 23697275 -179388257 + FLAM_A SINE Alu 18 119 -23 34 65 0 0 chr5 23697275 23697337 -179388195 + AT_rich Low_complexity Low_complexity 1 62 0 385 292 111 68 chr5 23697393 23697415 -179388117 - L1MB2 LINE L1 -1724 4422 4402 2226 122 0 0 chr5 23697415 23697719 -179387813 + AluSx SINE Alu 1 304 -8 385 292 111 68 chr5 23697719 23698298 -179387234 - L1MB2 LINE L1 -1744 4402 3795 4356 128 26 12 chr5 23698463 23699712 -179385820 + HERV9 LTR ERV1 5832 7121 -1278 2209 114 7 0 chr5 23700401 23700707 -179384825 - AluSx SINE Alu -4 308 1 429 20 0 0 chr5 23701004 23701054 -179384478 + (CA)n Simple_repeat Simple_repeat 1 50 0 243 331 38 11 chr5 23701774 23701958 -179383574 - MARNA DNA Mariner -197 389 201 23 0 0 0 chr5 23702084 23702107 -179383425 + AT_rich Low_complexity Low_complexity 1 23 0 771 261 41 15 chr5 23702173 23702368 -179383164 + MER58A DNA MER1_type 23 222 -2 239 173 19 0 chr5 23702775 23702827 -179382705 + (TA)n Simple_repeat Simple_repeat 2 54 0 710 250 29 0 chr5 23703199 23703371 -179382161 - MER45A DNA AcHobo -1 177 1 230 323 39 24 chr5 23703450 23703577 -179381955 - MIR SINE MIR -10 252 124 259 350 92 48 chr5 23703802 23704139 -179381393 - L2 LINE L2 -33 3280 2929 673 347 85 58 chr5 23704191 23705006 -179380526 - L2 LINE L2 -462 2852 2016 410 343 62 0 chr5 23706613 23706759 -179378773 - MIR SINE MIR -71 191 37 2397 85 0 0 chr5 23707538 23707833 -179377699 - AluSg SINE Alu -15 295 1 345 303 174 13 chr5 23708354 23708509 -179377023 + MER5A DNA MER1_type 9 188 -1 324 308 74 52 chr5 23709411 23709736 -179375796 + L1M4 LINE L1 2894 3225 -2921 1907 124 0 11 chr5 23709758 23710040 -179375492 + AluSx SINE Alu 1 279 -33 480 35 0 0 chr5 23710040 23710098 -179375434 + (CA)n Simple_repeat Simple_repeat 1 58 0 407 132 0 3 chr5 23710437 23710509 -179375023 - MLT1B-int LTR MaLR -1570 81 11 1057 230 50 66 chr5 23710541 23710937 -179374595 - MLT1B LTR MaLR 0 390 1 4297 240 25 68 chr5 23710967 23712128 -179373404 - MLT1A2-int LTR MaLR -32 1339 247 829 90 53 0 chr5 23712128 23712261 -179373271 - L1PA12 LINE L1 -1 6167 6028 4297 240 25 68 chr5 23712261 23712498 -179373034 - MLT1A2-int LTR MaLR -1124 247 1 1157 239 99 18 chr5 23712511 23712845 -179372687 - MLT1A2 LTR MaLR -13 361 1 883 122 6 58 chr5 23713300 23713456 -179372076 + Charlie3 DNA MER1_type 2559 2706 -4 559 281 69 10 chr5 23713475 23713678 -179371854 - LTR16A LTR ERVL -235 215 1 2394 169 39 14 chr5 23713727 23713832 -179371700 - L1MA7 LINE L1 -4 6287 6186 2533 122 3 11 chr5 23713832 23714210 -179371322 + THE1C LTR MaLR 1 375 0 2394 169 39 14 chr5 23714210 23714612 -179370920 - L1MA7 LINE L1 -105 6186 5767 945 188 16 26 chr5 23714612 23714804 -179370728 + L1MA7 LINE L1 5567 5756 -535 317 371 60 38 chr5 23715291 23715822 -179369710 - ERVL LTR ERVL -808 4956 4414 868 320 22 30 chr5 23716470 23716833 -179368699 - LTR16A LTR ERVL -2 448 89 2306 77 0 3 chr5 23716977 23717277 -179368255 + AluY SINE Alu 1 299 -12 22 0 0 0 chr5 23717574 23717596 -179367936 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr5 23718474 23718494 -179367038 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2174 124 0 3 chr5 23718897 23719203 -179366329 + AluSx SINE Alu 6 310 -2 218 103 0 26 chr5 23719214 23719253 -179366279 + (GAAAA)n Simple_repeat Simple_repeat 5 42 0 251 264 32 13 chr5 23719642 23719797 -179365735 + (TA)n Simple_repeat Simple_repeat 2 159 0 1317 219 66 80 chr5 23719810 23720254 -179365278 + MLT2B1 LTR ERVL 1 419 -45 444 82 0 0 chr5 23720254 23720315 -179365217 + (TA)n Simple_repeat Simple_repeat 2 62 0 1317 219 66 80 chr5 23720315 23720361 -179365171 + MLT2B1 LTR ERVL 419 464 0 254 247 0 35 chr5 23720962 23721047 -179364485 - L1ME LINE L1 -477 5644 5563 2547 59 0 0 chr5 23721141 23721444 -179364088 + AluY SINE Alu 1 303 -8 537 249 69 29 chr5 23721817 23721990 -179363542 + MIR SINE MIR 68 247 -15 41 0 0 0 chr5 23722004 23722045 -179363487 + AT_rich Low_complexity Low_complexity 1 41 0 3700 119 9 0 chr5 23722365 23722927 -179362605 + L1PA13 LINE L1 5597 6163 0 1129 177 109 53 chr5 23724335 23724618 -179360914 + AluJo SINE Alu 1 299 -3 279 365 119 25 chr5 23727211 23727496 -179358036 - L2 LINE L2 -436 2878 2567 201 39 0 0 chr5 23730342 23730368 -179355164 + (CAA)n Simple_repeat Simple_repeat 2 27 0 237 33 0 0 chr5 23732133 23732163 -179353369 + (TTTAG)n Simple_repeat Simple_repeat 3 32 0 2473 61 0 0 chr5 23732305 23732602 -179352930 + AluY SINE Alu 1 297 -14 1517 196 13 64 chr5 23732722 23733099 -179352433 - L1MB8 LINE L1 -258 5920 5563 6100 200 112 26 chr5 23733099 23734644 -179350888 - MER52A LTR ERV1 0 1755 1 844 230 71 97 chr5 23734647 23736721 -179348811 - L1MB8 LINE L1 -621 5563 3459 2603 97 33 3 chr5 23736721 23737111 -179348421 + L1PA13 LINE L1 5756 6157 -6 844 230 71 97 chr5 23737111 23737818 -179347714 - L1MB8 LINE L1 -2725 3459 2735 876 206 53 123 chr5 23737825 23738184 -179347348 - MLT1A1 LTR MaLR -24 341 8 260 237 0 0 chr5 23738199 23738258 -179347274 - L1MB8 LINE L1 -3424 2722 2664 1533 194 52 52 chr5 23739556 23739943 -179345589 - MLT1B LTR MaLR 0 390 4 487 200 33 0 chr5 23740677 23740767 -179344765 - MER7A DNA MER2_type -253 93 3 1118 190 5 14 chr5 23741128 23741339 -179344193 - AluJo SINE Alu 0 312 104 896 139 0 22 chr5 23741339 23741476 -179344056 - FLAM_C SINE Alu -3 140 7 22 0 0 0 chr5 23741518 23741540 -179343992 + AT_rich Low_complexity Low_complexity 1 22 0 705 282 100 38 chr5 23742214 23742554 -179342978 + L3 LINE CR1 1201 1561 -16 191 377 65 29 chr5 23742903 23743041 -179342491 + L2 LINE L2 3171 3313 0 26 0 0 0 chr5 23743835 23743861 -179341671 + AT_rich Low_complexity Low_complexity 1 26 0 265 319 88 35 chr5 23745657 23745999 -179339533 + HAL1 LINE L1 1197 1556 -951 599 250 12 6 chr5 23746615 23746783 -179338749 - MER3 DNA MER1_type -87 122 1 25 31 0 0 chr5 23746800 23746832 -179338700 + AT_rich Low_complexity Low_complexity 1 32 0 1073 201 91 77 chr5 23746855 23747218 -179338314 - MLT1A2 LTR MaLR -4 370 3 2216 118 0 0 chr5 23749196 23749500 -179336032 + AluSx SINE Alu 1 304 -8 2110 126 49 20 chr5 23750556 23750906 -179334626 - THE1B LTR MaLR -4 360 1 321 346 15 8 chr5 23751068 23751201 -179334331 + MIR SINE MIR 1 134 -128 248 109 0 22 chr5 23751208 23751254 -179334278 + (CAT)n Simple_repeat Simple_repeat 2 46 0 237 219 0 0 chr5 23751777 23751850 -179333682 + (CAT)n Simple_repeat Simple_repeat 3 75 0 4442 134 6 6 chr5 23752175 23752873 -179332659 - L1P LINE L1 -1754 4392 3694 276 30 0 0 chr5 23752873 23752906 -179332626 + (TTG)n Simple_repeat Simple_repeat 1 33 0 6070 76 32 8 chr5 23752919 23754472 -179331060 + L1PA8A LINE L1 4553 6125 -6 22 0 0 0 chr5 23754816 23754838 -179330694 + AT_rich Low_complexity Low_complexity 1 22 0 712 223 121 64 chr5 23755687 23756091 -179329441 - MSTC LTR MaLR 0 428 2 237 338 58 22 chr5 23756092 23756231 -179329301 + L2 LINE L2 2213 2356 -958 2495 124 6 3 chr5 23756232 23756595 -179328937 - THE1B LTR MaLR 0 364 1 240 122 0 0 chr5 23756673 23756714 -179328818 + (CA)n Simple_repeat Simple_repeat 2 42 0 361 366 52 6 chr5 23756781 23756953 -179328579 + L2 LINE L2 2525 2704 -610 22 56 0 0 chr5 23757053 23757089 -179328443 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr5 23757196 23757224 -179328308 + AT_rich Low_complexity Low_complexity 1 28 0 227 333 0 12 chr5 23757440 23757521 -179328011 + L2 LINE L2 3234 3313 0 194 296 0 0 chr5 23757502 23757556 -179327976 - L2 LINE L2 -803 2511 2458 * 207 0 0 0 chr5 23757969 23757992 -179327540 + (ATG)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr5 23759494 23759516 -179326016 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr5 23760662 23760684 -179324848 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr5 23760769 23760793 -179324739 + AT_rich Low_complexity Low_complexity 1 24 0 1914 158 3 0 chr5 23760883 23761193 -179324339 - AluSx SINE Alu -1 311 1 1646 211 118 10 chr5 23761844 23762260 -179323272 - LOR1b LTR ERV1 0 461 1 31 58 0 0 chr5 23762370 23762422 -179323110 + AT_rich Low_complexity Low_complexity 1 52 0 2514 180 20 14 chr5 23762581 23763091 -179322441 + LTR10D LTR ERV1 1 513 0 306 259 103 9 chr5 23763112 23763228 -179322304 + MIR SINE MIR 47 173 -89 789 250 116 16 chr5 23763279 23763591 -179321941 + MER57B LTR ERV1 3 369 -65 259 170 0 21 chr5 23763600 23763647 -179321885 + LTR12 LTR ERV1 54 99 -615 * 33505 108 27 8 chr5 23763645 23768591 -179316941 + HERV9 LTR ERV1 3357 8399 0 266 211 0 0 chr5 23768591 23768643 -179316889 + LTR30 LTR ERV1 1 52 -670 757 176 94 28 chr5 23768643 23768900 -179316632 + LTR12 LTR ERV1 55 274 -440 308 206 38 57 chr5 23768904 23769010 -179316522 + LTR30 LTR ERV1 375 475 -94 663 138 0 0 chr5 23769010 23769104 -179316428 + LTR12 LTR ERV1 489 582 -132 1976 171 6 9 chr5 23769110 23769454 -179316078 + MER21A LTR ERV1 589 931 0 232 299 100 53 chr5 23769567 23769868 -179315664 - L1M4 LINE L1 -1979 4167 3853 1343 91 25 0 chr5 23769912 23770109 -179315423 - HERV9 LTR ERV1 -26 8373 8172 431 300 68 34 chr5 23770109 23770346 -179315186 + L1M4 LINE L1 16 260 -6282 2336 97 0 3 chr5 23770352 23770663 -179314869 + AluSx SINE Alu 3 312 0 845 111 0 0 chr5 23771079 23771196 -179314336 - AluY SINE Alu -43 268 152 365 256 16 16 chr5 23772050 23772171 -179313361 - Looper DNA T2_type -8 1550 1430 1103 233 17 10 chr5 23772189 23772477 -179313055 - Looper DNA T2_type -598 960 671 23 54 0 0 chr5 23772477 23772514 -179313018 + AT_rich Low_complexity Low_complexity 1 37 0 556 292 78 10 chr5 23772528 23772720 -179312812 - MER3 DNA MER1_type 0 209 5 648 248 31 0 chr5 23772728 23772889 -179312643 - Looper DNA T2_type -893 665 500 221 176 0 59 chr5 23773151 23773219 -179312313 + GA-rich Low_complexity Low_complexity 1 64 0 413 133 36 24 chr5 23773345 23773428 -179312104 - MLT1D LTR MaLR 0 505 422 2150 238 72 65 chr5 23773428 23773782 -179311750 - L1MCb LINE L1 -4881 1026 676 1856 154 24 0 chr5 23773782 23774075 -179311457 + AluSx SINE Alu 1 300 -12 2150 238 72 65 chr5 23774075 23774492 -179311040 - L1MCb LINE L1 -5231 676 264 2099 111 0 0 chr5 23774492 23774808 -179310724 - AluSc SINE Alu 0 316 1 2150 238 72 65 chr5 23774808 23775063 -179310469 - L1MCb LINE L1 -5643 264 12 228 67 0 0 chr5 23775063 23775093 -179310439 + (TA)n Simple_repeat Simple_repeat 1 30 0 228 35 0 0 chr5 23775094 23775123 -179310409 + (GA)n Simple_repeat Simple_repeat 2 30 0 2150 238 72 65 chr5 23775123 23775430 -179310102 - L1MCb LINE L1 -5575 332 29 5755 40 0 19 chr5 23776255 23776989 -179308543 - L1PA3 LINE L1 -3 6152 5433 28 61 0 0 chr5 23777663 23777712 -179307820 + AT_rich Low_complexity Low_complexity 1 49 0 228 94 0 0 chr5 23777912 23777944 -179307588 + U3 snRNA snRNA 1 32 -185 23 68 0 0 chr5 23777970 23778014 -179307518 + AT_rich Low_complexity Low_complexity 1 44 0 451 221 0 16 chr5 23778441 23778563 -179306969 - MER53 DNA DNA 0 189 70 453 222 0 17 chr5 23778599 23778716 -179306816 - MER53 DNA DNA -74 115 1 545 333 75 4 chr5 23778722 23778950 -179306582 + MLT2E LTR ERVL 18 261 -367 417 284 38 49 chr5 23778971 23779154 -179306378 + MLT2E LTR ERVL 386 566 -62 2398 305 50 47 chr5 23779449 23780736 -179304796 + ERVL-E LTR ERVL 4448 5739 -25 243 273 91 11 chr5 23780738 23780826 -179304706 + MLT2E LTR ERVL 11 105 -523 1459 294 83 37 chr5 23781025 23781272 -179304260 + MLT1E LTR MaLR 1 235 -358 2340 185 12 26 chr5 23781272 23781765 -179303767 + MER66B LTR ERV1 1 486 0 1459 294 83 37 chr5 23781765 23782084 -179303448 + MLT1E LTR MaLR 235 593 0 251 236 0 0 chr5 23782084 23782137 -179303395 + MLT2E LTR ERVL 576 628 0 21 0 0 0 chr5 23782461 23782482 -179303050 + AT_rich Low_complexity Low_complexity 1 21 0 246 341 8 32 chr5 23782519 23782642 -179302890 + MER5A DNA MER1_type 38 157 -32 28 0 0 0 chr5 23783089 23783117 -179302415 + AT_rich Low_complexity Low_complexity 1 28 0 255 93 0 0 chr5 23783591 23783634 -179301898 + (TTAG)n Simple_repeat Simple_repeat 2 44 0 1925 130 7 0 chr5 23783634 23783919 -179301613 - AluSx SINE Alu -25 287 1 41 36 0 0 chr5 23784564 23784619 -179300913 + AT_rich Low_complexity Low_complexity 1 55 0 2265 52 0 0 chr5 23784637 23784909 -179300623 - AluY SINE Alu -11 300 29 23 86 0 0 chr5 23785150 23785208 -179300324 + AT_rich Low_complexity Low_complexity 1 58 0 338 214 20 0 chr5 23785678 23785776 -179299756 + (TATG)n Simple_repeat Simple_repeat 4 103 0 212 184 0 0 chr5 23785809 23785847 -179299685 + (TA)n Simple_repeat Simple_repeat 2 39 0 181 353 59 34 chr5 23786060 23786179 -179299353 - L2 LINE L2 -464 2850 2729 23 0 0 0 chr5 23786954 23786977 -179298555 + AT_rich Low_complexity Low_complexity 1 23 0 3879 178 32 11 chr5 23787269 23788088 -179297444 - L1MA8 LINE L1 -3 6288 5453 279 130 0 19 chr5 23788088 23788170 -179297362 + Alu SINE Alu 226 306 0 473 178 14 55 chr5 23788173 23788319 -179297213 - L1MCb LINE L1 -4965 1080 941 431 276 16 8 chr5 23788315 23788438 -179297094 - L1MCb LINE L1 -6267 297 174 * 25 31 0 0 chr5 23788465 23788497 -179297035 + AT_rich Low_complexity Low_complexity 1 32 0 713 279 82 34 chr5 23788614 23789090 -179296442 - L1ME3A LINE L1 -5 6165 5667 340 222 12 0 chr5 23789420 23789501 -179296031 - L1MB4 LINE L1 0 6180 6099 2473 178 28 0 chr5 23789509 23789976 -179295556 - L1MB4 LINE L1 -524 5809 5330 1261 234 39 28 chr5 23789971 23790360 -179295172 + L1M4 LINE L1 4687 5079 -1067 * 337 316 128 45 chr5 23791637 23791925 -179293607 - HAL1 LINE L1 -1386 1121 810 221 308 19 10 chr5 23792865 23792969 -179292563 - MIR SINE MIR -14 248 144 231 149 0 0 chr5 23793779 23793826 -179291706 + LTR66 LTR ERVL 394 440 -170 631 275 47 65 chr5 23793889 23794395 -179291137 + HAL1 LINE L1 828 1324 -1183 279 0 0 0 chr5 23794451 23794482 -179291050 + (CA)n Simple_repeat Simple_repeat 2 32 0 1533 203 36 46 chr5 23794682 23794907 -179290625 - MLT1B LTR MaLR 0 390 169 2193 59 6 86 chr5 23794907 23795244 -179290288 - AluY SINE Alu -1 310 1 1533 203 36 46 chr5 23795244 23795407 -179290125 - MLT1B LTR MaLR -221 169 6 208 208 0 42 chr5 23795431 23795479 -179290053 + (TAAAG)n Simple_repeat Simple_repeat 2 47 0 798 231 71 130 chr5 23795522 23795959 -179289573 + MLT2D LTR ERVL 4 414 0 449 429 49 7 chr5 23795961 23796378 -179289154 - L2 LINE L2 -270 3043 2609 8546 220 16 9 chr5 23797476 23797602 -179287930 - L1PA15 LINE L1 -2 7601 7477 3301 88 5 0 chr5 23797602 23798044 -179287488 - MLT2A1 LTR ERVL 0 444 1 8546 220 16 9 chr5 23798044 23800799 -179284733 - L1PA15 LINE L1 -126 7477 4707 950 251 42 26 chr5 23800805 23800907 -179284625 - L1P LINE L1 -3788 3796 3697 2116 164 14 22 chr5 23800907 23801274 -179284258 + THE1B LTR MaLR 1 364 0 950 251 42 26 chr5 23801274 23801516 -179284016 - L1P LINE L1 -3887 3697 3447 1933 125 45 17 chr5 23801532 23801885 -179283647 - L1PA10 LINE L1 -13 6155 5793 4716 265 51 30 chr5 23802218 23802464 -179283068 - L1PA15 LINE L1 -3896 3688 3448 5752 110 19 4 chr5 23802464 23803474 -179282058 - L1PA10 LINE L1 -13 6155 5136 4716 265 51 30 chr5 23803474 23805801 -179279731 - L1PA15 LINE L1 -4136 3448 1071 1139 306 43 10 chr5 23805824 23806307 -179279225 - L1PA15 LINE L1 -7076 505 7 418 167 0 0 chr5 23806449 23806515 -179279017 + FLAM_A SINE Alu 2 67 -65 2152 110 3 7 chr5 23807039 23807338 -179278194 - AluSg SINE Alu -12 298 1 2306 161 31 10 chr5 23807539 23807955 -179277577 - MSTA LTR MaLR 0 428 4 28 0 0 0 chr5 23808073 23808101 -179277431 + AT_rich Low_complexity Low_complexity 1 28 0 705 258 53 27 chr5 23808298 23808765 -179276767 - L1ME LINE L1 -562 5602 5121 1810 91 91 31 chr5 23809248 23809568 -179275964 + HERVH LTR ERV1 7375 7713 0 997 185 124 79 chr5 23809568 23809962 -179275570 + LTR7 LTR ERV1 1 412 -38 186 208 0 0 chr5 23810471 23810519 -179275013 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 261 284 106 80 chr5 23810839 23811114 -179274418 + LTR33 LTR ERVL 217 498 -23 305 237 10 72 chr5 23811209 23811306 -179274226 - L1MC4 LINE L1 -1337 6705 6615 218 191 0 16 chr5 23811317 23811380 -179274152 + (TA)n Simple_repeat Simple_repeat 1 62 0 21 0 0 0 chr5 23811650 23811671 -179273861 + AT_rich Low_complexity Low_complexity 1 21 0 41 66 0 0 chr5 23811760 23811836 -179273696 + AT_rich Low_complexity Low_complexity 1 76 0 2967 177 49 13 chr5 23811844 23812397 -179273135 - Tigger7 DNA MER2_type -159 574 2 1400 208 40 55 chr5 23812403 23812782 -179272750 - MER67D LTR ERV1 -140 374 2 1715 113 16 0 chr5 23813036 23813284 -179272248 + L1PB1 LINE L1 5540 5791 -360 311 149 75 9 chr5 23813284 23813391 -179272141 + (TA)n Simple_repeat Simple_repeat 1 114 0 2410 126 0 13 chr5 23813394 23813768 -179271764 + L1PB1 LINE L1 5782 6150 -1 1152 242 38 46 chr5 23813981 23814374 -179271158 - MLT1B LTR MaLR 0 390 1 1983 98 10 13 chr5 23815149 23815454 -179270078 - L1PA13 LINE L1 -208 5960 5657 1295 121 5 0 chr5 23815454 23815647 -179269885 + L1PA13 LINE L1 5957 6155 -8 563 208 29 87 chr5 23816350 23816456 -179269076 + MLT1A1 LTR MaLR 170 260 -105 1989 161 31 6 chr5 23816456 23816811 -179268721 + THE1B LTR MaLR 1 364 0 563 208 29 87 chr5 23816811 23816911 -179268621 + MLT1A1 LTR MaLR 260 364 -1 2434 51 0 0 chr5 23818335 23818629 -179266903 - AluY SINE Alu -17 294 1 2057 113 3 10 chr5 23819205 23819506 -179266026 + AluSx SINE Alu 1 299 -13 1474 153 80 0 chr5 23819525 23819787 -179265745 + AluJb SINE Alu 1 283 -29 2077 124 7 0 chr5 23820518 23820808 -179264724 - AluSg SINE Alu -18 292 1 21 57 0 0 chr5 23821852 23821887 -179263645 + AT_rich Low_complexity Low_complexity 1 35 0 1509 202 94 11 chr5 23822079 23822535 -179262997 + LTR54B LTR ERV1 1 494 -4 332 117 0 17 chr5 23822674 23822734 -179262798 + (TCC)n Simple_repeat Simple_repeat 3 61 0 5864 131 40 16 chr5 23822855 23823738 -179261794 + L1MA4A LINE L1 5166 6077 -226 528 92 0 0 chr5 23823738 23823814 -179261718 - MADE1 DNA Mariner -1 79 4 5864 131 40 16 chr5 23823814 23824044 -179261488 + L1MA4A LINE L1 6077 6300 -3 16559 171 63 32 chr5 23825051 23825448 -179260084 + L1MA1 LINE L1 16 399 -7166 253 125 0 0 chr5 23825448 23825488 -179260044 - MADE1 DNA Mariner -14 66 27 16559 171 63 32 chr5 23825488 23828382 -179257150 + L1MA1 LINE L1 399 3449 -4116 259 0 0 197 chr5 23828381 23828442 -179257090 - L1M1 LINE L1 -4466 3099 3051 * 5944 203 32 17 chr5 23828417 23829967 -179255565 - L1 LINE L1 -2497 5068 3478 1050 8 0 0 chr5 23829967 23830086 -179255446 + (TTCC)n Simple_repeat Simple_repeat 2 120 0 5944 203 32 17 chr5 23830086 23830467 -179255065 - L1 LINE L1 -4087 3478 3104 * 6727 186 16 18 chr5 23830465 23831893 -179253639 + L1MA1 LINE L1 5160 6585 -980 3622 140 18 5 chr5 23832437 23833120 -179252412 + L1MA1 LINE L1 6576 7267 -454 760 58 19 0 chr5 23835665 23835769 -179249763 + L1PA7 LINE L1 6048 6153 -1 181 438 10 0 chr5 23835960 23836056 -179249476 + L2 LINE L2 3160 3256 -16 294 169 92 15 chr5 23837801 23837866 -179247666 + Tigger5 DNA MER2_type 10 79 -2244 * 1126 210 25 4 chr5 23837859 23838097 -179247435 + Tigger5 DNA MER2_type 2081 2323 0 253 309 25 0 chr5 23839114 23839195 -179246337 - L2 LINE L2 -4 3268 3186 300 352 27 32 chr5 23839785 23840004 -179245528 - L2 LINE L2 -1 3312 3095 203 378 26 39 chr5 23839983 23840139 -179245393 - L2 LINE L2 -836 2478 2325 * 969 131 0 0 chr5 23841109 23841246 -179244286 + FLAM_C SINE Alu 7 143 0 1158 180 5 14 chr5 23841247 23841458 -179244074 + AluJo SINE Alu 104 312 0 1900 158 48 0 chr5 23841814 23842144 -179243388 + MER7A DNA MER2_type 3 346 0 233 57 29 0 chr5 23842476 23842511 -179243021 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1064 193 80 75 chr5 23843259 23843621 -179241911 + MLT1A1 LTR MaLR 1 364 -1 1654 260 87 49 chr5 23843666 23844346 -179241186 - L1M4 LINE L1 -1062 5084 4360 1333 214 32 21 chr5 23844346 23844631 -179240901 - AluJo SINE Alu -24 288 1 1654 260 87 49 chr5 23844631 23844846 -179240686 - L1M4 LINE L1 -1786 4360 4155 702 276 112 23 chr5 23844869 23845324 -179240208 - L1M4 LINE L1 -2606 3540 3010 2008 136 7 0 chr5 23845324 23845626 -179239906 - AluSc SINE Alu -5 304 1 702 276 112 23 chr5 23845626 23845812 -179239720 - L1M4 LINE L1 -3136 3010 2842 261 249 110 29 chr5 23845912 23846085 -179239447 + L1ME1 LINE L1 1412 1598 -4942 1059 242 68 42 chr5 23846087 23846454 -179239078 + L1ME1 LINE L1 5769 6153 -407 2404 65 3 0 chr5 23846454 23846761 -179238771 + AluY SINE Alu 1 308 -3 1059 242 68 42 chr5 23846761 23846887 -179238645 + L1ME1 LINE L1 6153 6274 -286 354 107 0 0 chr5 23847185 23847241 -179238291 + (TG)n Simple_repeat Simple_repeat 1 56 0 278 245 0 11 chr5 23847253 23847347 -179238185 + CT-rich Low_complexity Low_complexity 4 96 0 932 234 0 5 chr5 23851573 23851787 -179233745 + L1MB5 LINE L1 5950 6162 -12 197 350 98 16 chr5 23851914 23852037 -179233495 + L2 LINE L2 3140 3272 0 213 289 0 0 chr5 23852388 23852440 -179233092 + (TATG)n Simple_repeat Simple_repeat 4 55 0 570 318 53 0 chr5 23852555 23852744 -179232788 + MIR SINE MIR 18 216 -46 225 65 0 0 chr5 23854274 23854305 -179231227 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 275 250 65 82 chr5 23854703 23854749 -179230783 + L1MC5 LINE L1 7122 7167 -794 1890 145 3 38 chr5 23854749 23855067 -179230465 - AluSq SINE Alu -6 307 1 275 250 65 82 chr5 23855067 23855204 -179230328 + L1MC5 LINE L1 7167 7302 -659 918 252 129 90 chr5 23855265 23855722 -179229810 + MLT1C-int LTR MaLR 876 1350 -21 659 251 81 14 chr5 23855777 23856047 -179229485 + MLT1C LTR MaLR 64 415 -52 250 158 0 0 chr5 23856339 23856377 -179229155 + MLT1C LTR MaLR 427 464 -3 267 327 38 25 chr5 23856542 23856701 -179228831 - MIR SINE MIR -49 213 53 1188 222 177 11 chr5 23856923 23857284 -179228248 + MLT1C LTR MaLR 1 421 -46 2113 115 10 22 chr5 23857623 23857937 -179227595 - AluSq SINE Alu -3 310 1 192 364 18 45 chr5 23858435 23858545 -179226987 - L2 LINE L2 -21 3292 3186 557 336 36 40 chr5 23858939 23859213 -179226319 + HERVL40 LTR ERVL 5254 5526 -4 1544 174 4 8 chr5 23859544 23859809 -179225723 - AluJo SINE Alu -48 264 1 299 213 33 0 chr5 23859825 23859886 -179225646 - HERVL40 LTR ERVL -5450 80 18 960 284 29 75 chr5 23859900 23860382 -179225150 - LTR40a LTR ERVL -2 460 1 1735 348 36 18 chr5 23860384 23861317 -179224215 - HERVL40 LTR ERVL -2094 2902 1953 974 310 86 26 chr5 23861586 23862086 -179223446 - HERVL40 LTR ERVL -3419 1577 1048 2521 325 176 29 chr5 23863921 23865068 -179220464 + L2 LINE L2 460 1437 -1877 1981 146 3 0 chr5 23865068 23865369 -179220163 + AluSx SINE Alu 1 302 -10 2521 325 176 29 chr5 23865369 23866205 -179219327 + L2 LINE L2 1437 2734 -580 196 186 23 0 chr5 23866433 23866476 -179219056 + L2 LINE L2 3258 3301 -12 21 57 0 0 chr5 23867057 23867092 -179218440 + AT_rich Low_complexity Low_complexity 1 35 0 675 231 35 35 chr5 23867178 23867377 -179218155 + MER3 DNA MER1_type 10 208 -1 1334 200 79 24 chr5 23868115 23868445 -179217087 + MLT1A1 LTR MaLR 1 348 -17 2092 120 90 0 chr5 23868446 23868780 -179216752 - THE1B LTR MaLR 0 364 1 9229 122 34 47 chr5 23868780 23870382 -179215150 - THE1B-int LTR MaLR 0 1580 1 1989 148 77 3 chr5 23870382 23870721 -179214811 - THE1B LTR MaLR 0 364 1 225 321 0 0 chr5 23871958 23872014 -179213518 + MIR3 SINE MIR 149 204 -4 1591 184 54 64 chr5 23874771 23875163 -179210369 + MLT1B LTR MaLR 1 388 -2 26 0 0 0 chr5 23875239 23875265 -179210267 + AT_rich Low_complexity Low_complexity 1 26 0 227 286 39 0 chr5 23875394 23875471 -179210061 - L1M4 LINE L1 -1998 4148 4069 27 73 0 0 chr5 23875566 23875621 -179209911 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr5 23876064 23876085 -179209447 + AT_rich Low_complexity Low_complexity 1 21 0 201 108 0 0 chr5 23876414 23876451 -179209081 + (TG)n Simple_repeat Simple_repeat 1 37 0 22 56 0 0 chr5 23876881 23876917 -179208615 + AT_rich Low_complexity Low_complexity 1 36 0 1714 123 43 4 chr5 23877063 23877339 -179208193 - L1PA10 LINE L1 -9 6159 5873 24 0 0 0 chr5 23878177 23878201 -179207331 + AT_rich Low_complexity Low_complexity 1 24 0 216 331 48 30 chr5 23878489 23878655 -179206877 + L2 LINE L2 1936 2104 -1210 23 0 0 0 chr5 23879780 23879803 -179205729 + AT_rich Low_complexity Low_complexity 1 23 0 180 111 0 0 chr5 23880691 23880718 -179204814 + (CA)n Simple_repeat Simple_repeat 2 28 0 26 0 0 0 chr5 23880762 23880788 -179204744 + AT_rich Low_complexity Low_complexity 1 26 0 1897 112 114 97 chr5 23880923 23881344 -179204188 + MSTA LTR MaLR 1 428 0 35 63 0 0 chr5 23881864 23881927 -179203605 + AT_rich Low_complexity Low_complexity 1 63 0 26 0 0 0 chr5 23882697 23882723 -179202809 + AT_rich Low_complexity Low_complexity 1 26 0 196 225 0 0 chr5 23884315 23884355 -179201177 - MIR3 SINE MIR -17 191 152 396 291 93 7 chr5 23884409 23884560 -179200972 - MER58A DNA MER1_type 0 164 1 189 107 0 0 chr5 23884770 23884798 -179200734 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 234 0 0 0 chr5 23884798 23884824 -179200708 + (T)n Simple_repeat Simple_repeat 1 26 0 604 114 0 0 chr5 23884854 23884942 -179200590 + AluS SINE Alu 1 88 -225 1317 113 5 10 chr5 23887740 23887944 -179197588 - AluSg SINE Alu -107 203 1 453 331 84 0 chr5 23889052 23889351 -179196181 + L1ME3A LINE L1 4959 5282 -864 636 303 108 32 chr5 23889459 23889951 -179195581 + L1ME3A LINE L1 5440 5968 -202 21 0 0 0 chr5 23890149 23890170 -179195362 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr5 23890388 23890418 -179195114 + AT_rich Low_complexity Low_complexity 1 30 0 689 310 91 60 chr5 23890479 23891120 -179194412 - L2 LINE L2 -15 3298 2603 759 331 92 28 chr5 23891120 23891661 -179193871 - L2 LINE L2 -981 2333 1758 1525 120 178 0 chr5 23891785 23892109 -179193423 + AluSq SINE Alu 1 367 0 687 256 0 0 chr5 23892291 23892451 -179193081 - L1PA16 LINE L1 -7 6159 6000 1027 322 88 23 chr5 23892492 23893107 -179192425 - L2 LINE L2 -1786 1528 874 225 294 29 49 chr5 23894783 23894885 -179190647 + MIR SINE MIR 41 140 -68 180 0 0 0 chr5 23894924 23894944 -179190588 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 27 29 0 0 chr5 23895300 23895334 -179190198 + AT_rich Low_complexity Low_complexity 1 34 0 1799 72 19 26 chr5 23895337 23895601 -179189931 - L1PB1 LINE L1 -9 6142 5881 1958 131 17 0 chr5 23895601 23895891 -179189641 - AluSx SINE Alu -17 295 1 2172 104 13 3 chr5 23896483 23896781 -179188751 - AluSq SINE Alu -12 301 1 191 267 109 103 chr5 23897372 23897537 -179187995 + MIR3 SINE MIR 18 183 -25 2100 125 0 0 chr5 23897600 23897888 -179187644 - AluSx SINE Alu -24 288 1 243 274 10 69 chr5 23897920 23898022 -179187510 + MER58C DNA MER1_type 120 215 0 1644 229 20 0 chr5 23899161 23899519 -179186013 - MLT1A1 LTR MaLR 0 365 1 2281 139 5 83 chr5 23900137 23900583 -179184949 + MLT2D LTR ERVL 1 411 -3 2306 89 0 0 chr5 23900707 23901000 -179184532 + AluY SINE Alu 1 293 -18 2124 221 16 0 chr5 23901744 23902193 -179183339 + MER74C LTR ERVL 5 460 0 393 346 60 41 chr5 23902704 23903117 -179182415 + L1ME1 LINE L1 26 446 -5624 467 286 62 50 chr5 23903166 23903924 -179181608 + L1ME1 LINE L1 525 1272 -4808 207 0 0 0 chr5 23903924 23903947 -179181585 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 467 286 62 50 chr5 23903947 23904182 -179181350 + L1ME1 LINE L1 1272 1503 -4577 669 252 87 0 chr5 23904191 23904433 -179181099 + L1ME1 LINE L1 4715 4977 -1103 1957 264 67 18 chr5 23904435 23905373 -179180159 + L1ME1 LINE L1 5022 6012 -88 309 309 70 30 chr5 23905527 23905757 -179179775 + L1ME LINE L1 2960 3198 -2882 485 228 16 0 chr5 23906824 23906951 -179178581 - L1MB4 LINE L1 0 6180 6052 21 0 0 0 chr5 23907359 23907380 -179178152 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr5 23907688 23907717 -179177815 + AT_rich Low_complexity Low_complexity 1 29 0 2065 115 7 0 chr5 23907876 23908159 -179177373 + AluSx SINE Alu 1 286 -22 620 62 21 0 chr5 23908159 23908256 -179177276 + (TATAA)n Simple_repeat Simple_repeat 4 102 0 228 222 0 19 chr5 23908444 23908498 -179177034 - LTR33A LTR ERVL -20 503 451 229 359 26 34 chr5 23908725 23908842 -179176690 - MLT2E LTR ERVL -481 147 32 217 222 0 0 chr5 23909744 23909789 -179175743 + (TG)n Simple_repeat Simple_repeat 2 46 0 217 222 0 0 chr5 23910823 23910868 -179174664 + (TG)n Simple_repeat Simple_repeat 2 46 0 255 240 62 47 chr5 23911246 23911375 -179174157 - LTR16A LTR ERVL -18 432 302 2439 206 42 4 chr5 23911444 23911925 -179173607 + MER68 LTR ERV1 55 553 -9 1797 141 10 33 chr5 23912089 23912393 -179173139 + AluSq SINE Alu 1 297 -16 352 361 73 55 chr5 23912923 23913057 -179172475 - HERV16 LTR ERVL -765 4999 4869 2259 88 0 3 chr5 23913057 23913353 -179172179 + AluY SINE Alu 1 295 -16 352 361 73 55 chr5 23913353 23913694 -179171838 - HERV16 LTR ERVL -895 4869 4504 2038 127 0 25 chr5 23913694 23914010 -179171522 + AluSg SINE Alu 1 308 -2 352 361 73 55 chr5 23914010 23914255 -179171277 - HERV16 LTR ERVL -1260 4504 4265 413 328 34 21 chr5 23914440 23914675 -179170857 - HERV16 LTR ERVL -1672 3982 3745 298 341 90 0 chr5 23914900 23915242 -179170290 - HERV16 LTR ERVL -2333 3321 2938 789 213 87 43 chr5 23915671 23915878 -179169654 + MER20 DNA MER1_type 1 216 -3 263 297 20 20 chr5 23915930 23916031 -179169501 - HERV16 LTR ERVL -4440 556 456 245 284 37 37 chr5 23916332 23916441 -179169091 - LTR16A1 LTR ERVL -348 109 1 28 0 0 0 chr5 23916533 23916561 -179168971 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr5 23916991 23917015 -179168517 + AT_rich Low_complexity Low_complexity 1 24 0 547 143 58 209 chr5 23917593 23917851 -179167681 + MER20 DNA MER1_type 1 219 0 22 35 0 0 chr5 23918135 23918164 -179167368 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr5 23918982 23919009 -179166523 + AT_rich Low_complexity Low_complexity 1 27 0 252 220 34 0 chr5 23919251 23919310 -179166222 + MLT1L LTR MaLR 549 609 -6 339 318 109 25 chr5 23920203 23920486 -179165046 - HERV16 LTR ERVL -2154 3331 3025 2229 112 49 27 chr5 23920488 23920855 -179164677 - THE1C LTR MaLR 0 375 1 911 360 72 26 chr5 23920906 23921493 -179164039 + L3 LINE CR1 521 1134 -443 27 29 0 0 chr5 23921520 23921554 -179163978 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr5 23921676 23921704 -179163828 + AT_rich Low_complexity Low_complexity 1 28 0 638 328 26 15 chr5 23921727 23921998 -179163534 - LTR16B LTR ERVL 0 464 191 2126 112 3 16 chr5 23922019 23922322 -179163210 + AluSg SINE Alu 2 300 -10 228 418 29 22 chr5 23922659 23922932 -179162600 - LTR16B LTR ERVL -144 320 46 23 0 0 0 chr5 23923535 23923558 -179161974 + AT_rich Low_complexity Low_complexity 1 23 0 580 319 120 3 chr5 23923666 23923967 -179161565 - HERV16 LTR ERVL -1064 4700 4365 709 347 43 27 chr5 23925034 23925420 -179160112 - HERV16 LTR ERVL -1910 3086 2736 2204 181 124 46 chr5 23925421 23926023 -179159509 - LTR48B LTR ERV1 0 787 4 964 302 66 67 chr5 23926143 23926931 -179158601 - HERV16 LTR ERVL -2613 2383 1597 706 313 80 39 chr5 23927052 23927442 -179158090 - HERV16 LTR ERVL -3608 1388 983 546 303 70 95 chr5 23927465 23927850 -179157682 - MER77 LTR ERV1 -27 578 336 2538 46 20 0 chr5 23927850 23928155 -179157377 - AluY SINE Alu 0 311 1 546 303 70 95 chr5 23928155 23928432 -179157100 - MER77 LTR ERV1 -269 336 54 1841 70 12 0 chr5 23928861 23929104 -179156428 + L1PA7 LINE L1 5908 6153 -1 1198 172 19 94 chr5 23929259 23929578 -179155954 - AluJb SINE Alu -7 295 1 1532 184 35 49 chr5 23929687 23930035 -179155497 - MER7A DNA MER2_type -4 342 2 484 316 92 10 chr5 23930084 23930280 -179155252 + MIR SINE MIR 21 232 -30 302 260 87 31 chr5 23931238 23931365 -179154167 + L1MCa LINE L1 66 199 -6227 208 320 10 10 chr5 23931806 23931909 -179153623 + (TATG)n Simple_repeat Simple_repeat 2 104 0 247 256 11 22 chr5 23932229 23932319 -179153213 - L1ME LINE L1 -536 5585 5497 23 0 0 0 chr5 23932695 23932718 -179152814 + AT_rich Low_complexity Low_complexity 1 23 0 220 197 92 53 chr5 23933343 23933419 -179152113 - MIR3 SINE MIR -22 186 108 2115 126 3 0 chr5 23933459 23933753 -179151779 + AluSx SINE Alu 3 297 -15 189 74 0 0 chr5 23934088 23934115 -179151417 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2635 107 0 10 chr5 23934458 23934850 -179150682 + L1PA13 LINE L1 5772 6159 -4 1634 227 76 56 chr5 23936485 23936983 -179148549 - MLT2B1 LTR ERVL -8 512 5 4069 185 37 13 chr5 23937013 23937793 -179147739 - ERVL-B1 LTR ERVL -242 5522 4724 267 269 0 15 chr5 23937797 23937864 -179147668 - MER2 DNA MER2_type 0 345 280 1071 225 5 0 chr5 23937902 23938111 -179147421 - MER2 DNA MER2_type -135 210 1 4228 228 50 21 chr5 23938129 23938640 -179146892 - HERV16 LTR ERVL -3466 2298 1804 189 0 0 0 chr5 23938640 23938661 -179146871 + (TC)n Simple_repeat Simple_repeat 2 22 0 4228 228 50 21 chr5 23938661 23939251 -179146281 - HERV16 LTR ERVL -3960 1804 1128 1525 124 128 22 chr5 23939251 23939525 -179146007 - L1P4 LINE L1 -437 5729 5427 2246 142 8 13 chr5 23939525 23939905 -179145627 + L1PA16 LINE L1 5787 6164 -2 723 146 8 0 chr5 23939915 23940038 -179145494 - HERV16 LTR ERVL -4627 1137 1014 * 2484 253 43 30 chr5 23940037 23940705 -179144827 - HERV16 LTR ERVL -4877 887 211 999 214 60 0 chr5 23940706 23940745 -179144787 + AluSg/x SINE Alu 84 119 -193 243 0 0 0 chr5 23940745 23940772 -179144760 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 999 214 60 0 chr5 23940772 23940933 -179144599 + AluSg/x SINE Alu 119 296 -16 920 325 64 9 chr5 23941555 23941979 -179143553 + LTR16A LTR ERVL 1 447 -3 240 226 16 0 chr5 23941984 23942046 -179143486 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 312 321 76 8 chr5 23942163 23942294 -179143238 + MIR SINE MIR 53 192 -70 11435 210 47 32 chr5 23942321 23945995 -179139537 + L1MA4A LINE L1 1 3616 -3749 1703 177 0 3 chr5 23945995 23946277 -179139255 + AluJo SINE Alu 7 287 -25 224 29 0 29 chr5 23946280 23946314 -179139218 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 11435 210 47 32 chr5 23946314 23949615 -179135917 + L1MA4A LINE L1 3617 7361 -4 29 28 0 0 chr5 23951198 23951234 -179134298 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr5 23951274 23951296 -179134236 + AT_rich Low_complexity Low_complexity 1 22 0 676 295 24 9 chr5 23951296 23951506 -179134026 - MER20 DNA MER1_type 0 219 7 29 47 0 0 chr5 23951538 23951581 -179133951 + AT_rich Low_complexity Low_complexity 1 43 0 320 322 60 0 chr5 23951804 23951987 -179133545 - L1M4 LINE L1 -3156 2990 2797 26 30 0 0 chr5 23951987 23952020 -179133512 + AT_rich Low_complexity Low_complexity 1 33 0 327 278 142 13 chr5 23952039 23952341 -179133191 - L1M4 LINE L1 -3614 2532 2192 328 158 12 12 chr5 23952374 23952456 -179133076 + (TA)n Simple_repeat Simple_repeat 1 82 0 25 0 0 0 chr5 23952744 23952769 -179132763 + AT_rich Low_complexity Low_complexity 1 25 0 2681 226 46 8 chr5 23952974 23953603 -179131929 + MLT-int LTR MaLR 5 657 -1078 299 169 31 31 chr5 23953746 23953811 -179131721 + MLT-int LTR MaLR 677 741 -994 890 162 94 26 chr5 23953839 23954030 -179131502 - MSTA LTR MaLR -131 297 94 26 30 0 0 chr5 23954657 23954690 -179130842 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr5 23955169 23955190 -179130342 + AT_rich Low_complexity Low_complexity 1 21 0 1308 164 4 0 chr5 23955383 23955621 -179129911 + L1PA14 LINE L1 5923 6161 0 892 252 39 25 chr5 23956739 23957025 -179128507 - MLT1A1 LTR MaLR -75 290 1 1266 205 48 44 chr5 23957444 23957737 -179127795 + MLT2B1 LTR ERVL 1 294 -226 350 323 0 0 chr5 23958422 23958518 -179127014 + L2 LINE L2 3217 3312 -1 201 365 8 0 chr5 23958608 23958697 -179126835 - MIR SINE MIR -61 147 89 3444 125 2 4 chr5 23959899 23960403 -179125129 - MER9 LTR ERVK -8 503 1 3025 166 59 16 chr5 23960902 23961542 -179123990 - MER41-int LTR ERV1 -3922 3894 3227 * 3221 143 18 31 chr5 23961535 23962081 -179123451 - MER41-int LTR ERV1 -5351 595 57 872 193 28 0 chr5 23964779 23964955 -179120577 - L1PBa LINE L1 -6682 181 1 32 67 0 0 chr5 23965647 23965707 -179119825 + AT_rich Low_complexity Low_complexity 1 60 0 21 36 0 0 chr5 23965954 23965982 -179119550 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr5 23966591 23966620 -179118912 + AT_rich Low_complexity Low_complexity 1 29 0 304 242 0 0 chr5 23968136 23968202 -179117330 + MLT1F1 LTR MaLR 59 124 -443 2230 209 45 25 chr5 23968209 23968768 -179116764 + L1MC3 LINE L1 7196 7765 -20 196 197 16 16 chr5 23970673 23970734 -179114798 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 1816 128 51 65 chr5 23970739 23971092 -179114440 + THE1C LTR MaLR 28 375 0 354 123 0 0 chr5 23971094 23971151 -179114381 + (TA)n Simple_repeat Simple_repeat 2 58 0 617 327 73 20 chr5 23971559 23971807 -179113725 + LTR16C LTR ERVL 171 431 -60 274 354 9 9 chr5 23972177 23972290 -179113242 + MLT2E LTR ERVL 47 159 -469 1458 72 25 130 chr5 23972746 23973022 -179112510 + AluYb8 SINE Alu 61 307 -11 2237 177 24 5 chr5 23973047 23973471 -179112061 + MSTB1 LTR MaLR 1 432 0 2840 220 69 3 chr5 23973471 23974122 -179111410 + MSTB1-int LTR MaLR 1 694 -957 308 265 41 10 chr5 23974223 23974321 -179111211 + L1MC2 LINE L1 6229 6329 -15 204 179 0 0 chr5 23974333 23974372 -179111160 + A-rich Low_complexity Low_complexity 1 39 0 290 326 35 47 chr5 23974587 23974759 -179110773 + L1MCc LINE L1 259 428 -5995 856 76 0 8 chr5 23974851 23974969 -179110563 - AluSp/q SINE Alu -9 304 188 216 0 0 0 chr5 23975062 23975086 -179110446 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 291 337 0 0 chr5 23975148 23975234 -179110298 + L1MCc LINE L1 824 909 -5514 1130 255 85 46 chr5 23976079 23976538 -179108994 - MLT1D LTR MaLR -3 502 26 326 197 26 0 chr5 23977914 23977990 -179107542 - MER67D LTR ERV1 -5 509 432 1958 144 26 7 chr5 23978043 23978349 -179107183 + AluSx SINE Alu 1 312 0 1165 237 40 23 chr5 23978436 23978801 -179106731 + MER66A LTR ERV1 169 459 -19 1022 183 0 7 chr5 23978807 23978999 -179106533 + MER66-int LTR ERV1 1733 2173 -4503 261 57 0 0 chr5 23978999 23979034 -179106498 + (T)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr5 23979339 23979362 -179106170 + AT_rich Low_complexity Low_complexity 1 23 0 741 267 169 73 chr5 23980007 23980212 -179105320 + MLT1E1 LTR MaLR 19 203 -451 1292 238 3 10 chr5 23980212 23980511 -179105021 + AluJb SINE Alu 1 297 -15 741 267 169 73 chr5 23980511 23980784 -179104748 + MLT1E1 LTR MaLR 203 543 -111 264 167 0 0 chr5 23982261 23982303 -179103229 + MLT1A1 LTR MaLR 5 46 -328 234 0 0 0 chr5 23982361 23982387 -179103145 + (ATG)n Simple_repeat Simple_repeat 2 27 0 216 0 0 0 chr5 23982387 23982411 -179103121 + (TTA)n Simple_repeat Simple_repeat 3 26 0 3116 31 0 3 chr5 23982419 23982803 -179102729 + L1P LINE L1 3635 4017 -2129 388 165 35 0 chr5 23982791 23982876 -179102656 - L1MA3 LINE L1 -179 6126 6039 * 1060 149 0 0 chr5 23982876 23983051 -179102481 + L1MA3 LINE L1 6125 6305 0 1268 264 32 5 chr5 23983052 23983367 -179102165 + MLT1A1 LTR MaLR 37 361 -4 21 36 0 0 chr5 23983872 23983900 -179101632 + AT_rich Low_complexity Low_complexity 1 28 0 24 77 0 0 chr5 23984721 23984773 -179100759 + AT_rich Low_complexity Low_complexity 1 52 0 37 52 0 0 chr5 23984819 23984877 -179100655 + AT_rich Low_complexity Low_complexity 1 58 0 667 219 0 0 chr5 23984929 23985066 -179100466 - MSTC LTR MaLR 0 428 292 1698 94 0 55 chr5 23985592 23985846 -179099686 - AluSg SINE Alu -21 289 50 299 160 42 34 chr5 23987805 23987924 -179097608 + (TTATA)n Simple_repeat Simple_repeat 5 124 0 353 57 95 25 chr5 23987927 23987943 -179097589 + (TA)n Simple_repeat Simple_repeat 2 15 -155 2644 41 0 0 chr5 23987943 23988260 -179097272 - AluYb8 SINE Alu -1 317 1 353 57 95 25 chr5 23988260 23988401 -179097131 + (TA)n Simple_repeat Simple_repeat 15 170 0 25 31 0 0 chr5 23988439 23988471 -179097061 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr5 23988665 23988687 -179096845 + AT_rich Low_complexity Low_complexity 1 22 0 615 260 86 32 chr5 23989571 23989965 -179095567 - MSTD LTR MaLR 0 396 3 200 250 0 0 chr5 23990044 23990084 -179095448 + MER5A DNA MER1_type 10 49 -140 22 0 0 0 chr5 23990983 23991005 -179094527 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr5 23991207 23991228 -179094304 + AT_rich Low_complexity Low_complexity 1 21 0 328 294 110 48 chr5 23991832 23991978 -179093554 - L2 LINE L2 -1 3271 3117 339 192 222 20 chr5 23992413 23992512 -179093020 - L2 LINE L2 -5 3308 3190 1767 111 0 4 chr5 23993380 23993641 -179091891 + L1PB1 LINE L1 5892 6151 0 21 0 0 0 chr5 23994309 23994330 -179091202 + AT_rich Low_complexity Low_complexity 1 21 0 224 328 0 30 chr5 23994356 23994423 -179091109 + L2 LINE L2 3234 3298 -15 337 279 79 63 chr5 23994661 23994915 -179090617 - L1MC/D LINE L1 -2294 5514 5257 351 0 0 0 chr5 23996394 23996433 -179089099 + (TG)n Simple_repeat Simple_repeat 1 39 0 309 26 0 0 chr5 23996432 23996470 -179089062 + (GA)n Simple_repeat Simple_repeat 1 38 0 * 1997 147 0 0 chr5 23997105 23997391 -179088141 + AluSx SINE Alu 1 286 -26 25 0 0 0 chr5 23998515 23998540 -179086992 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr5 24001104 24001133 -179084399 + AT_rich Low_complexity Low_complexity 1 29 0 31 26 0 0 chr5 24001188 24001226 -179084306 + AT_rich Low_complexity Low_complexity 1 38 0 1160 66 0 6 chr5 24002425 24002591 -179082941 - L1P LINE L1 -727 5427 5263 6223 90 1 6 chr5 24002691 24003561 -179081971 - L1P LINE L1 -1242 4904 4039 438 168 30 20 chr5 24004642 24004743 -179080789 - L1ME3A LINE L1 -182 5988 5887 22 0 0 0 chr5 24004885 24004907 -179080625 + AT_rich Low_complexity Low_complexity 1 22 0 233 169 92 31 chr5 24004933 24004998 -179080534 + MLT1I LTR MaLR 318 386 -23 232 280 13 0 chr5 24005029 24005104 -179080428 - L1MEc LINE L1 -3806 2576 2501 347 303 93 47 chr5 24005492 24006165 -179079367 - L1MEc LINE L1 -4671 1713 1013 1447 210 17 0 chr5 24006248 24006539 -179078993 + AluJb SINE Alu 1 296 -16 1801 281 71 26 chr5 24006619 24007051 -179078481 - L1ME1 LINE L1 -5 6161 5750 1470 222 48 16 chr5 24007051 24007429 -179078103 - MLT1B LTR MaLR 0 390 1 1801 281 71 26 chr5 24007429 24008647 -179076885 - L1ME1 LINE L1 -416 5750 4441 22 35 0 0 chr5 24008793 24008822 -179076710 + AT_rich Low_complexity Low_complexity 1 29 0 204 163 23 0 chr5 24011149 24011192 -179074340 + (TA)n Simple_repeat Simple_repeat 2 45 0 1717 160 0 22 chr5 24011564 24011883 -179073649 + AluSx SINE Alu 1 312 0 1919 116 27 3 chr5 24012172 24012473 -179073059 + AluSq SINE Alu 3 310 -3 342 0 0 0 chr5 24012729 24012767 -179072765 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1910 121 0 0 chr5 24013023 24013315 -179072217 + AluSq SINE Alu 21 312 0 28 48 0 0 chr5 24013997 24014039 -179071493 + AT_rich Low_complexity Low_complexity 1 42 0 180 368 81 0 chr5 24014043 24014130 -179071402 - MIR3 SINE MIR -28 180 87 748 155 13 2 chr5 24014130 24014284 -179071248 - MLT1A1 LTR MaLR -2 363 236 357 182 20 81 chr5 24014293 24014392 -179071140 - MLT1A1 LTR MaLR -266 99 7 1337 216 68 60 chr5 24014584 24015085 -179070447 + MLT1D LTR MaLR 1 505 0 32 67 0 0 chr5 24015545 24015605 -179069927 + AT_rich Low_complexity Low_complexity 1 60 0 261 350 88 8 chr5 24016663 24016903 -179068629 + MIR SINE MIR 3 261 -1 27 29 0 0 chr5 24016986 24017020 -179068512 + AT_rich Low_complexity Low_complexity 1 34 0 24492 150 15 14 chr5 24018320 24020916 -179064616 - L1PA8A LINE L1 -1 6445 3854 207 0 0 0 chr5 24020916 24020939 -179064593 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 24492 150 15 14 chr5 24020939 24024709 -179060823 - L1PA8A LINE L1 -2592 3854 4 1837 166 0 0 chr5 24024886 24025193 -179060339 - AluSx SINE Alu -5 307 1 1420 130 0 14 chr5 24025230 24025445 -179060087 + AluSx SINE Alu 5 216 -96 239 220 40 20 chr5 24027376 24027476 -179058056 + (TA)n Simple_repeat Simple_repeat 2 103 0 1045 241 120 35 chr5 24027636 24027952 -179057580 - MLT1A2 LTR MaLR -31 343 1 180 302 128 12 chr5 24028044 24028130 -179057402 + L2 LINE L2 2111 2206 -1108 204 370 77 6 chr5 24028231 24028412 -179057120 + L2 LINE L2 3120 3313 0 347 290 161 14 chr5 24028559 24028776 -179056756 + MER110 LTR ERV1 91 339 -152 2959 127 33 0 chr5 24028779 24029228 -179056304 + MER1A DNA MER1_type 66 529 0 305 279 130 13 chr5 24029242 24029396 -179056136 + MER110 LTR ERV1 320 491 0 469 251 95 56 chr5 24030155 24030386 -179055146 - MER68 LTR ERV1 -77 485 246 1716 173 3 14 chr5 24031376 24031671 -179053861 - AluJb SINE Alu 0 312 21 25 51 0 0 chr5 24032320 24032359 -179053173 + AT_rich Low_complexity Low_complexity 1 39 0 947 206 27 38 chr5 24032895 24032961 -179052571 - L1MC3 LINE L1 -21 7764 7699 2508 113 22 8 chr5 24032961 24033331 -179052201 + THE1C LTR MaLR 1 375 0 947 206 27 38 chr5 24033331 24033526 -179052006 - L1MC3 LINE L1 -86 7699 7506 605 247 48 12 chr5 24034144 24034310 -179051222 - MIR SINE MIR -2 260 89 1140 160 52 5 chr5 24034401 24034614 -179050918 + MER39 LTR ERV1 485 707 0 240 174 0 22 chr5 24034645 24034691 -179050841 + MER39 LTR ERV1 660 704 -3 2131 127 135 5 chr5 24035107 24035486 -179050046 - MSTA LTR MaLR 0 428 1 966 242 29 6 chr5 24035790 24036104 -179049428 - MER33 DNA MER1_type 0 324 4 405 279 0 36 chr5 24036123 24036234 -179049298 + MER5A DNA MER1_type 9 115 -74 181 291 18 0 chr5 24036212 24036267 -179049265 - MER5B DNA MER1_type -121 57 2 * 203 244 0 0 chr5 24036517 24036562 -179048970 + (TG)n Simple_repeat Simple_repeat 2 46 0 242 407 0 9 chr5 24037088 24037196 -179048336 + MIR SINE MIR 6 112 -150 3368 116 16 4 chr5 24037228 24037729 -179047803 - MER84 LTR ERV1 0 507 1 225 94 0 0 chr5 24037988 24038020 -179047512 + (CAT)n Simple_repeat Simple_repeat 1 32 0 1326 99 6 0 chr5 24038080 24038252 -179047280 - AluSp SINE Alu -17 296 124 194 300 170 0 chr5 24038264 24038364 -179047168 - MIR SINE MIR -81 181 65 1774 169 24 71 chr5 24038631 24039040 -179046492 + MLT1B LTR MaLR 1 390 0 363 253 0 11 chr5 24039038 24039129 -179046403 - Tigger5 DNA MER2_type 0 2323 2234 376 133 0 17 chr5 24039179 24039239 -179046293 - Tigger5 DNA MER2_type 0 2323 2265 369 109 0 0 chr5 24039438 24039493 -179046039 + (TAA)n Simple_repeat Simple_repeat 1 55 0 815 304 124 13 chr5 24040386 24040781 -179044751 + MER110-int LTR ERV1 4177 4615 -32 808 274 46 69 chr5 24040969 24041359 -179044173 + MER110 LTR ERV1 103 483 -8 23 33 0 0 chr5 24042703 24042733 -179042799 + AT_rich Low_complexity Low_complexity 1 30 0 390 42 0 0 chr5 24042943 24042991 -179042541 + (TG)n Simple_repeat Simple_repeat 1 48 0 214 186 0 23 chr5 24042991 24043034 -179042498 + GA-rich Low_complexity Low_complexity 5 46 0 1485 185 10 49 chr5 24043090 24043398 -179042134 + AluJo SINE Alu 12 307 -5 24 77 0 0 chr5 24043503 24043555 -179041977 + AT_rich Low_complexity Low_complexity 1 52 0 2467 54 0 3 chr5 24044589 24044887 -179040645 - AluY SINE Alu -1 310 14 2737 136 17 110 chr5 24046060 24046641 -179038891 + MER1A DNA MER1_type 1 527 0 1360 194 91 97 chr5 24046695 24047133 -179038399 + MER34B LTR ERV1 35 474 -91 2294 102 3 0 chr5 24047133 24047437 -179038095 + AluSc SINE Alu 1 305 -4 1360 194 91 97 chr5 24047437 24047520 -179038012 + MER34B LTR ERV1 474 510 -55 3372 229 47 33 chr5 24047520 24047912 -179037620 - MER21B LTR ERV1 -3 860 475 1545 187 0 28 chr5 24047912 24048196 -179037336 - AluJo SINE Alu -31 281 6 3372 229 47 33 chr5 24048196 24048651 -179036881 - MER21B LTR ERV1 -388 475 1 1360 194 91 97 chr5 24048651 24048706 -179036826 + MER34B LTR ERV1 510 564 -1 1045 248 63 27 chr5 24048718 24049017 -179036515 + MLT1E LTR MaLR 284 593 0 421 255 38 118 chr5 24049386 24049649 -179035883 - MIR SINE MIR 0 262 21 25 31 0 0 chr5 24050516 24050548 -179034984 + AT_rich Low_complexity Low_complexity 1 32 0 5548 121 18 1 chr5 24050548 24051386 -179034146 - L1PA10 LINE L1 -11 7595 6744 2313 161 3 0 chr5 24051389 24051755 -179033777 - THE1C LTR MaLR -8 367 1 23160 192 13 35 chr5 24051757 24053380 -179032152 - L1PA10 LINE L1 -841 6743 5086 2195 92 0 7 chr5 24053380 24053690 -179031842 - AluY SINE Alu 0 308 1 23160 192 13 35 chr5 24053690 24057609 -179027923 - L1PA10 LINE L1 -2498 5086 11 379 286 34 20 chr5 24058432 24058579 -179026953 + MIR SINE MIR 103 251 -11 252 161 0 18 chr5 24058683 24058739 -179026793 - L1PA12 LINE L1 -2 6166 6112 1901 145 35 29 chr5 24058740 24059050 -179026482 - AluSx SINE Alu 0 312 1 2236 109 0 7 chr5 24059949 24060252 -179025280 - AluSq SINE Alu -12 301 1 404 164 0 0 chr5 24061073 24061134 -179024398 - AluS SINE Alu -240 63 3 23 33 0 0 chr5 24061992 24062022 -179023510 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr5 24062064 24062106 -179023426 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr5 24062179 24062201 -179023331 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr5 24062683 24062705 -179022827 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr5 24062910 24062944 -179022588 + AT_rich Low_complexity Low_complexity 1 34 0 223 355 13 0 chr5 24063272 24063348 -179022184 - L2 LINE L2 0 3313 3237 204 289 58 0 chr5 24063687 24063739 -179021793 - L2 LINE L2 -558 2756 2702 258 143 0 0 chr5 24063747 24063796 -179021736 + (TG)n Simple_repeat Simple_repeat 2 50 0 372 385 6 0 chr5 24063925 24064086 -179021446 - L2 LINE L2 -782 2532 2371 18320 122 16 12 chr5 24064338 24067162 -179018370 + L1PA6 LINE L1 11 2843 -3303 17587 71 6 0 chr5 24067165 24070371 -179015161 + L1PA6 LINE L1 2975 6154 0 206 306 134 30 chr5 24071386 24071520 -179014012 - MIR SINE MIR -33 229 82 375 278 144 0 chr5 24072089 24072269 -179013263 - LTR33A LTR ERVL 0 523 318 261 208 8 136 chr5 24072290 24072415 -179013117 - LTR33A LTR ERVL -413 110 2 24 32 0 0 chr5 24072509 24072540 -179012992 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr5 24072667 24072695 -179012837 + AT_rich Low_complexity Low_complexity 1 28 0 900 232 38 0 chr5 24072868 24073079 -179012453 + MER58A DNA MER1_type 1 219 -5 1594 229 8 11 chr5 24074791 24075149 -179010383 + MLT1A1 LTR MaLR 1 357 -8 180 0 0 0 chr5 24075482 24075502 -179010030 + (TC)n Simple_repeat Simple_repeat 1 20 0 516 16 0 0 chr5 24075505 24075566 -179009966 + (CA)n Simple_repeat Simple_repeat 2 62 0 358 337 86 29 chr5 24075643 24075922 -179009610 + MLT1K LTR MaLR 279 573 -15 3973 158 38 6 chr5 24076073 24076762 -179008770 - MER50 LTR ERV1 -23 711 1 380 297 0 0 chr5 24076766 24076857 -179008675 + MER63A DNA MER1_type 102 192 -18 6221 196 84 33 chr5 24076955 24078362 -179007170 + L1MC1 LINE L1 25 1672 -4754 2049 137 3 13 chr5 24078362 24078675 -179006857 + AluSg SINE Alu 1 310 0 6221 196 84 33 chr5 24078675 24079655 -179005877 + L1MC1 LINE L1 1672 2601 -3825 1851 89 4 0 chr5 24079661 24079896 -179005636 + AluSp SINE Alu 1 236 -77 886 90 0 0 chr5 24079896 24080007 -179005525 - AluSp SINE Alu -202 111 1 4937 230 31 26 chr5 24080018 24082227 -179003305 + L1MC1 LINE L1 4391 6607 -6 25 0 0 0 chr5 24082245 24082270 -179003262 + AT_rich Low_complexity Low_complexity 1 25 0 270 0 0 0 chr5 24082478 24082508 -179003024 + (TG)n Simple_repeat Simple_repeat 2 31 0 1953 147 25 77 chr5 24082522 24082924 -179002608 + Tigger2 DNA MER2_type 2338 2718 0 323 324 40 47 chr5 24084223 24084371 -179001161 - MIR SINE MIR -64 198 52 1437 210 7 20 chr5 24084792 24085097 -179000435 - AluJo SINE Alu -11 301 1 1479 174 48 7 chr5 24085243 24085513 -179000019 - MLT1A1 LTR MaLR -4 361 81 2130 152 16 21 chr5 24085513 24085889 -178999643 + THE1C LTR MaLR 2 375 0 24 0 0 0 chr5 24086034 24086058 -178999474 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr5 24086417 24086439 -178999093 + AT_rich Low_complexity Low_complexity 1 22 0 252 200 215 0 chr5 24086676 24086741 -178998791 + MER58B DNA MER1_type 12 90 -251 23 33 0 0 chr5 24086741 24086771 -178998761 + AT_rich Low_complexity Low_complexity 1 30 0 524 248 41 7 chr5 24086771 24086916 -178998616 + MER58B DNA MER1_type 168 317 -24 1036 261 178 53 chr5 24087186 24087865 -178997667 + LTR41 LTR ERVL 9 772 -1 22 56 0 0 chr5 24088649 24088685 -178996847 + AT_rich Low_complexity Low_complexity 1 36 0 1629 188 47 3 chr5 24088813 24089154 -178996378 + L1MA6 LINE L1 5940 6295 -5 2302 72 13 35 chr5 24089335 24089653 -178995879 - AluSp SINE Alu -2 311 1 2082 54 108 0 chr5 24089661 24089939 -178995593 - AluY SINE Alu -3 308 1 21 71 0 0 chr5 24090427 24090469 -178995063 + AT_rich Low_complexity Low_complexity 1 42 0 2411 73 0 19 chr5 24090622 24090935 -178994597 - AluY SINE Alu 0 311 5 2258 91 0 28 chr5 24091793 24092111 -178993421 + AluY SINE Alu 2 310 -1 297 312 110 9 chr5 24093472 24093581 -178991951 - MIR SINE MIR -114 148 29 548 228 38 97 chr5 24094521 24094758 -178990774 + MIR SINE MIR 17 239 -23 2145 118 23 0 chr5 24094836 24095142 -178990390 - AluSp SINE Alu 0 313 1 1133 245 70 47 chr5 24095171 24095616 -178989916 + LTR40b LTR ERVL 8 462 0 1270 272 30 92 chr5 24095632 24096209 -178989323 + HERVL40 LTR ERVL 28 568 -4962 494 333 12 0 chr5 24096252 24096417 -178989115 + HERVL40 LTR ERVL 565 731 -4799 1270 205 32 87 chr5 24096424 24096804 -178988728 - MLT1A2 LTR MaLR 0 374 16 195 42 0 0 chr5 24096807 24096831 -178988701 + (CATTA)n Simple_repeat Simple_repeat 1 24 0 372 296 0 78 chr5 24096883 24097025 -178988507 + HERVL40 LTR ERVL 784 914 -4616 1133 307 63 35 chr5 24097029 24097566 -178987966 + HERVL40 LTR ERVL 1064 1615 -3915 1966 114 17 10 chr5 24097647 24097955 -178987577 + AluY SINE Alu 1 311 0 452 334 48 48 chr5 24097998 24098372 -178987160 + MER89-int LTR ERV1 6118 6491 -310 * 782 255 43 51 chr5 24098350 24098605 -178986927 + HERVL40 LTR ERVL 5278 5530 0 1528 265 51 18 chr5 24098617 24099108 -178986424 + LTR40a LTR ERVL 13 519 0 407 253 22 90 chr5 24099205 24099257 -178986275 + MIR SINE MIR 76 130 -132 1527 250 124 48 chr5 24099257 24099862 -178985670 + MLT1E1 LTR MaLR 1 651 -3 407 253 22 90 chr5 24099862 24099987 -178985545 + MIR SINE MIR 130 241 -21 420 55 0 0 chr5 24100542 24100597 -178984935 + (CA)n Simple_repeat Simple_repeat 2 56 0 203 250 36 24 chr5 24100624 24100708 -178984824 + (TATATG)n Simple_repeat Simple_repeat 3 87 0 2157 106 0 16 chr5 24101224 24101527 -178984005 + AluSg SINE Alu 1 298 -12 1215 191 233 11 chr5 24101755 24102137 -178983395 + MLT1C LTR MaLR 1 467 0 966 227 35 5 chr5 24102137 24102340 -178983192 + MER58A DNA MER1_type 10 218 -6 486 321 46 25 chr5 24102667 24102904 -178982628 - MIR SINE MIR -16 246 5 303 363 32 19 chr5 24102915 24103072 -178982460 + L2 LINE L2 416 574 -2740 247 295 16 57 chr5 24103113 24103235 -178982297 + L2 LINE L2 1046 1162 -2152 3732 134 45 3 chr5 24103553 24104171 -178981361 + LTR9B LTR ERV1 1 644 0 744 295 40 80 chr5 24104249 24104312 -178981220 + HERVL LTR ERVL 4218 4282 -1206 789 235 61 24 chr5 24104312 24104525 -178981007 - MER58A DNA MER1_type 0 224 4 744 295 40 80 chr5 24104525 24104861 -178980671 + HERVL LTR ERVL 4282 4604 -884 319 273 16 48 chr5 24105058 24105199 -178980333 - MLT1I LTR MaLR -225 184 91 612 318 70 32 chr5 24105524 24105955 -178979577 + HERVL LTR ERVL 4898 5344 -420 1873 161 18 174 chr5 24106184 24106743 -178978789 + MER70A LTR ERVL 1 472 0 213 450 0 0 chr5 24106992 24107112 -178978420 + MIR SINE MIR 30 149 -59 29 0 0 0 chr5 24107320 24107349 -178978183 + AT_rich Low_complexity Low_complexity 1 29 0 438 181 23 12 chr5 24107370 24107541 -178977991 + (TA)n Simple_repeat Simple_repeat 2 174 0 469 134 28 34 chr5 24107560 24107739 -178977793 + (TA)n Simple_repeat Simple_repeat 1 178 0 22 0 0 0 chr5 24107751 24107773 -178977759 + AT_rich Low_complexity Low_complexity 1 22 0 278 167 31 31 chr5 24107784 24107946 -178977586 + (TA)n Simple_repeat Simple_repeat 1 162 0 29 0 0 0 chr5 24107967 24107996 -178977536 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr5 24108102 24108138 -178977394 + AT_rich Low_complexity Low_complexity 1 36 0 193 224 12 12 chr5 24108248 24108333 -178977199 + (TA)n Simple_repeat Simple_repeat 1 85 0 21 0 0 0 chr5 24108343 24108364 -178977168 + AT_rich Low_complexity Low_complexity 1 21 0 47 19 0 0 chr5 24108439 24108493 -178977039 + AT_rich Low_complexity Low_complexity 1 54 0 269 194 48 32 chr5 24108789 24108851 -178976681 + MER115 DNA AcHobo 10 72 -621 357 24 0 0 chr5 24108888 24108930 -178976602 + (CA)n Simple_repeat Simple_repeat 2 43 0 1382 137 66 0 chr5 24108977 24109218 -178976314 + MER67C LTR ERV1 7 263 -447 2237 106 109 0 chr5 24109218 24109558 -178975974 - MER51B LTR ERV1 0 377 1 1896 151 78 0 chr5 24109562 24109881 -178975651 - MER51B-int LTR ERV1 -3 7813 7470 557 194 85 8 chr5 24109881 24110010 -178975522 - LTR54B LTR ERV1 -357 141 3 10552 122 55 22 chr5 24110010 24111696 -178973836 - MER51B-int LTR ERV1 -389 7148 5407 1992 119 5 4 chr5 24111683 24112083 -178973449 - MER51B-int LTR ERV1 -2563 2654 2210 * 891 220 5 28 chr5 24112092 24112310 -178973222 - MER51B-int LTR ERV1 -3258 1959 1747 3854 104 23 95 chr5 24112320 24113014 -178972518 + LTR9B LTR ERV1 1 644 0 1463 151 23 0 chr5 24113015 24113273 -178972259 - MER51B-int LTR ERV1 -2859 3087 2824 6687 117 68 8 chr5 24113288 24114604 -178970928 - MER51B-int LTR ERV1 -4551 3265 1810 541 135 114 115 chr5 24114604 24114801 -178970731 - MER4A LTR ERV1 -131 648 276 3907 170 10 13 chr5 24114872 24115582 -178969950 - MER51B-int LTR ERV1 -6321 1495 788 822 55 0 71 chr5 24115585 24115712 -178969820 - MER51B-int LTR ERV1 -7698 118 1 1896 136 121 9 chr5 24115712 24115809 -178969723 - MER51B LTR ERV1 0 377 292 2290 102 3 0 chr5 24115809 24116114 -178969418 + AluSp SINE Alu 1 306 -7 1896 136 121 9 chr5 24116114 24116355 -178969177 - MER51B LTR ERV1 -85 292 1 * 2760 141 13 2 chr5 24116355 24116801 -178968731 + MER67C LTR ERV1 260 710 0 313 389 46 11 chr5 24116810 24116985 -178968547 + MER115 DNA AcHobo 153 333 -360 201 39 0 0 chr5 24117048 24117074 -178968458 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 243 260 48 27 chr5 24117467 24117613 -178967919 + Zaphod DNA AcHobo 3851 3999 -32 868 237 117 53 chr5 24118090 24118432 -178967100 + MLT1A1 LTR MaLR 2 365 0 306 87 0 0 chr5 24118904 24118950 -178966582 + (CA)n Simple_repeat Simple_repeat 1 46 0 24 67 0 0 chr5 24119594 24119639 -178965893 + AT_rich Low_complexity Low_complexity 1 45 0 1445 119 13 0 chr5 24120080 24120307 -178965225 - L1MA1 LINE L1 0 6302 6073 360 291 60 0 chr5 24120691 24120825 -178964707 - LTR50 LTR ERVL -653 142 1 25 0 0 0 chr5 24121398 24121423 -178964109 + AT_rich Low_complexity Low_complexity 1 25 0 295 56 0 0 chr5 24121612 24121648 -178963884 + U2 snRNA snRNA 1 36 -152 183 42 0 0 chr5 24122386 24122410 -178963122 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 421 272 113 51 chr5 24122426 24122547 -178962985 + MLT1I LTR MaLR 85 224 -185 1989 158 116 13 chr5 24122547 24122934 -178962598 - MSTA LTR MaLR 0 428 2 421 272 113 51 chr5 24122934 24123007 -178962525 + MLT1I LTR MaLR 224 291 -118 345 276 129 72 chr5 24123294 24123332 -178962200 + HAL1 LINE L1 1032 1066 -1441 2077 84 0 24 chr5 24123332 24123619 -178961913 - AluSp SINE Alu -21 292 13 345 276 129 72 chr5 24123619 24123953 -178961579 + HAL1 LINE L1 1066 1425 -1082 294 282 69 88 chr5 24123996 24124494 -178961038 + HAL1 LINE L1 1519 2025 -482 3123 106 22 2 chr5 24124494 24124938 -178960594 + MLT2A2 LTR ERVL 1 453 0 294 282 69 88 chr5 24124938 24124969 -178960563 + HAL1 LINE L1 2025 2055 -452 1955 102 47 70 chr5 24124969 24125127 -178960405 + THE1C LTR MaLR 1 161 -214 2015 88 3 82 chr5 24125127 24125458 -178960074 - AluSq SINE Alu -6 307 3 1955 102 47 70 chr5 24125458 24125683 -178959849 + THE1C LTR MaLR 161 375 0 294 282 69 88 chr5 24125683 24126038 -178959494 + HAL1 LINE L1 2055 2387 -120 5224 167 28 15 chr5 24126643 24128104 -178957428 - L1MA8 LINE L1 -42 6249 4777 347 274 0 0 chr5 24129827 24129911 -178955621 - L2 LINE L2 -1346 1968 1885 394 242 0 32 chr5 24130014 24130109 -178955423 + MLT1E1 LTR MaLR 60 151 -503 1553 172 14 84 chr5 24130174 24130439 -178955093 + Tigger2a DNA MER2_type 3 236 -2472 2087 107 30 0 chr5 24130439 24130738 -178954794 + AluY SINE Alu 1 308 -3 1553 172 14 84 chr5 24130738 24130839 -178954693 + Tigger2a DNA MER2_type 236 343 -91 686 325 55 52 chr5 24131286 24131502 -178954030 + LTR16A LTR ERVL 36 255 -195 1107 40 33 13 chr5 24131502 24131679 -178953853 - L1PA3 LINE L1 0 6155 5998 686 325 55 52 chr5 24131679 24131862 -178953670 + LTR16A LTR ERVL 255 436 -14 711 275 51 36 chr5 24131880 24132156 -178953376 + HERV16 LTR ERVL 8 287 -4709 618 335 43 33 chr5 24132261 24132658 -178952874 + HERV16 LTR ERVL 458 858 -4138 2135 109 7 0 chr5 24132673 24132958 -178952574 + AluSp SINE Alu 3 289 -24 395 372 46 10 chr5 24132986 24133290 -178952242 + HERV16 LTR ERVL 1002 1316 -3680 398 381 25 12 chr5 24133479 24133723 -178951809 + HERV16 LTR ERVL 1334 1580 -3416 2306 310 99 30 chr5 24133780 24134593 -178950939 + HERV16 LTR ERVL 1710 2648 -2348 1556 238 31 8 chr5 24134593 24134980 -178950552 + MSTD LTR MaLR 1 396 0 2306 310 99 30 chr5 24134980 24135456 -178950076 + HERV16 LTR ERVL 2648 3089 -1907 599 283 76 83 chr5 24135935 24136213 -178949319 + HERV16 LTR ERVL 3315 3591 -2063 1876 169 85 2 chr5 24136213 24136615 -178948917 + LTR23 LTR ERV1 1 435 -2 599 283 76 83 chr5 24136615 24136756 -178948776 + HERV16 LTR ERVL 3591 3731 -1923 258 344 23 16 chr5 24137054 24137182 -178948350 + LTR16A LTR ERVL 178 306 -144 237 132 26 0 chr5 24137183 24137221 -178948311 - MLT2B1 LTR ERVL 0 444 406 305 81 68 0 chr5 24137230 24137304 -178948228 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 655 246 92 77 chr5 24137311 24137660 -178947872 - MLT2B1 LTR ERVL -60 354 1 357 343 43 0 chr5 24137662 24137802 -178947730 + LTR16A LTR ERVL 305 450 0 250 245 10 39 chr5 24138120 24138222 -178947310 - MER97b DNA MER1_type? -871 182 84 730 185 167 0 chr5 24138269 24138431 -178947101 + MER5A DNA MER1_type 1 189 0 25 0 0 0 chr5 24138456 24138481 -178947051 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr5 24139192 24139217 -178946315 + AT_rich Low_complexity Low_complexity 1 25 0 184 77 51 0 chr5 24139997 24140036 -178945496 + (TA)n Simple_repeat Simple_repeat 2 42 0 31 0 0 0 chr5 24140089 24140120 -178945412 + AT_rich Low_complexity Low_complexity 1 31 0 2261 109 0 0 chr5 24140465 24140776 -178944756 - AluY SINE Alu 0 311 1 692 174 0 8 chr5 24142072 24142204 -178943328 + FLAM_C SINE Alu 3 133 0 220 310 103 35 chr5 24143925 24144070 -178941462 - MER5A DNA MER1_type -28 161 7 26 0 0 0 chr5 24144615 24144641 -178940891 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr5 24144931 24144955 -178940577 + AT_rich Low_complexity Low_complexity 1 24 0 229 191 43 0 chr5 24146366 24146413 -178939119 - L1MC4 LINE L1 -1340 6702 6654 2159 141 75 0 chr5 24146420 24146795 -178938737 - MER57A LTR ERV1 0 403 1 315 299 85 37 chr5 24146883 24147154 -178938378 - L1ME4a LINE L1 -12 6109 5826 207 0 0 0 chr5 24147167 24147190 -178938342 + (CTATT)n Simple_repeat Simple_repeat 2 24 0 1157 276 42 30 chr5 24147225 24147627 -178937905 + MLT1C LTR MaLR 60 466 -1 386 275 0 0 chr5 24147631 24147711 -178937821 - Tigger7 DNA MER2_type -5 2482 2403 1761 136 25 113 chr5 24147718 24148071 -178937461 + Tigger3(Golem) DNA MER2_type 26 3028 -1 2200 235 17 0 chr5 24148083 24148543 -178936989 - Tigger7 DNA MER2_type -213 520 53 2037 118 0 33 chr5 24148756 24149062 -178936470 + AluSg SINE Alu 3 298 -12 24 77 0 0 chr5 24149550 24149602 -178935930 + AT_rich Low_complexity Low_complexity 1 52 0 2000 152 0 0 chr5 24150228 24150537 -178934995 - AluSx SINE Alu -3 309 1 22 0 0 0 chr5 24150580 24150602 -178934930 + AT_rich Low_complexity Low_complexity 1 22 0 684 313 38 4 chr5 24151062 24151302 -178934230 - MIR SINE MIR -12 250 3 225 157 0 39 chr5 24151481 24151532 -178934000 + (TA)n Simple_repeat Simple_repeat 2 50 0 234 0 0 0 chr5 24151532 24151558 -178933974 + (CA)n Simple_repeat Simple_repeat 2 27 0 2581 58 0 0 chr5 24151743 24152054 -178933478 - AluY SINE Alu 0 311 1 903 299 78 25 chr5 24152734 24153092 -178932440 - LTR16C LTR ERVL -14 477 101 26 30 0 0 chr5 24153632 24153665 -178931867 + AT_rich Low_complexity Low_complexity 1 33 0 202 338 135 23 chr5 24153945 24154078 -178931454 - L2 LINE L2 -795 2519 2372 1840 170 141 5 chr5 24154082 24154459 -178931073 + MSTA LTR MaLR 1 428 0 8581 205 11 2 chr5 24154461 24156096 -178929436 + MSTA-int LTR MaLR 2 1651 0 1531 197 186 19 chr5 24156096 24156420 -178929112 + MSTB LTR MaLR 1 270 -156 192 97 0 0 chr5 24156420 24156451 -178929081 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1743 193 3 0 chr5 24156451 24156747 -178928785 - AluJb SINE Alu -15 297 1 1531 197 186 19 chr5 24156747 24156786 -178928746 + MSTB LTR MaLR 269 426 0 382 155 0 0 chr5 24157054 24157125 -178928407 + L1PB4 LINE L1 6086 6156 0 525 296 75 19 chr5 24159077 24159502 -178926030 + L1ME3A LINE L1 4884 5332 -814 1179 290 94 2 chr5 24159518 24159998 -178925534 + L1ME3A LINE L1 5406 5929 -241 1474 236 67 0 chr5 24159998 24160384 -178925148 + L1MB4 LINE L1 5768 6179 -1 336 258 91 40 chr5 24160393 24160591 -178924941 + L1ME3A LINE L1 5661 5868 -253 303 297 79 79 chr5 24160831 24160996 -178924536 + L1ME3A LINE L1 5995 6159 -11 200 213 0 0 chr5 24162343 24162390 -178923142 + A-rich Low_complexity Low_complexity 1 47 0 25 65 0 0 chr5 24163617 24163663 -178921869 + AT_rich Low_complexity Low_complexity 1 46 0 36 70 0 0 chr5 24165454 24165525 -178920007 + AT_rich Low_complexity Low_complexity 1 71 0 319 358 91 11 chr5 24165531 24165718 -178919814 - MIR SINE MIR -5 257 56 50 42 0 0 chr5 24165875 24165946 -178919586 + AT_rich Low_complexity Low_complexity 1 71 0 1190 243 24 36 chr5 24166107 24166436 -178919096 - MSTD LTR MaLR -8 388 64 205 343 86 23 chr5 24166681 24166856 -178918676 - MIR SINE MIR -48 214 29 397 327 31 75 chr5 24166998 24167252 -178918280 - MIR SINE MIR -18 244 2 13005 189 60 21 chr5 24168503 24170227 -178915305 - L1PB1 LINE L1 -2 6865 5210 2196 114 3 0 chr5 24170227 24170525 -178915007 - AluSp SINE Alu -14 299 1 13005 189 60 21 chr5 24170525 24174635 -178910897 - L1PB1 LINE L1 -1657 5210 620 871 197 5 30 chr5 24174620 24174818 -178910714 - L1PB1 LINE L1 -6668 195 3 * 279 0 0 0 chr5 24175401 24175432 -178910100 + (CA)n Simple_repeat Simple_repeat 2 32 0 266 255 130 57 chr5 24175452 24175820 -178909712 + L1MEc LINE L1 1389 1932 -4284 310 243 148 33 chr5 24176283 24176493 -178909039 + L1MEc LINE L1 2199 2432 -3783 22 35 0 0 chr5 24177297 24177326 -178908206 + AT_rich Low_complexity Low_complexity 1 29 0 657 123 47 0 chr5 24177366 24177472 -178908060 + HY1 scRNA scRNA 1 111 -1 24 0 0 0 chr5 24177472 24177496 -178908036 + AT_rich Low_complexity Low_complexity 1 24 0 1165 121 0 0 chr5 24177517 24177674 -178907858 - AluSg1 SINE Alu -25 287 131 249 169 17 51 chr5 24180509 24180568 -178904964 + MLT1H LTR MaLR 102 158 -391 384 193 151 82 chr5 24180612 24180979 -178904553 + MLT1H LTR MaLR 152 563 -4 201 133 0 0 chr5 24182709 24182739 -178902793 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 699 158 108 0 chr5 24183543 24183682 -178901850 - AluSg1 SINE Alu -153 156 3 181 385 13 13 chr5 24184616 24184694 -178900838 + L2 LINE L2 3195 3272 0 2184 109 0 0 chr5 24185236 24185539 -178899993 - AluSc SINE Alu -6 303 1 190 325 92 33 chr5 24185825 24185945 -178899587 - L2 LINE L2 -896 2418 2292 1774 266 101 50 chr5 24185952 24186525 -178899007 + L1MC3 LINE L1 784 1326 -5100 318 26 0 0 chr5 24186525 24186564 -178898968 + (CA)n Simple_repeat Simple_repeat 2 40 0 1774 266 101 50 chr5 24186564 24188203 -178897329 + L1MC3 LINE L1 1326 3310 -3116 1112 221 107 56 chr5 24188249 24188684 -178896848 - MLT2B1 LTR ERVL -8 512 1 530 267 50 50 chr5 24188687 24188945 -178896587 + L1MC3 LINE L1 4354 4611 -1815 1614 274 27 22 chr5 24188975 24189416 -178896116 + L1MC3 LINE L1 4682 5128 -1298 1883 144 45 28 chr5 24189416 24189771 -178895761 - THE1B LTR MaLR -3 361 1 1614 274 27 22 chr5 24189771 24189950 -178895582 + L1MC3 LINE L1 5128 5305 -1121 6909 236 93 37 chr5 24189983 24191501 -178894031 + L1MC3 LINE L1 5287 6717 -1348 204 40 0 0 chr5 24191501 24191526 -178894006 + (TG)n Simple_repeat Simple_repeat 2 26 0 6909 236 93 37 chr5 24191526 24192166 -178893366 + L1MC3 LINE L1 6717 7319 -746 1501 201 82 37 chr5 24192166 24192545 -178892987 - MSTD LTR MaLR 0 396 1 6909 236 93 37 chr5 24192545 24193013 -178892519 + L1MC3 LINE L1 7319 8064 -1 2659 174 8 63 chr5 24193133 24193335 -178892197 + MER41C LTR ERV1 1 212 -342 2234 127 0 0 chr5 24193335 24193634 -178891898 - AluSx SINE Alu -11 301 3 2659 174 8 63 chr5 24193634 24194017 -178891515 + MER41C LTR ERV1 212 554 0 420 261 0 0 chr5 24194147 24194239 -178891293 - MER69 DNA AcHobo 0 2526 2435 403 203 38 0 chr5 24194392 24194471 -178891061 - MER69 DNA AcHobo -2444 82 1 263 357 100 21 chr5 24194545 24194884 -178890648 - L2 LINE L2 -732 2582 2217 188 211 154 0 chr5 24195157 24195209 -178890323 - MIR SINE MIR -94 168 109 2981 196 5 32 chr5 24195369 24195951 -178889581 + L1MB5 LINE L1 5536 6101 -73 2307 97 3 0 chr5 24195951 24196249 -178889283 - AluSp SINE Alu -14 299 1 2981 196 5 32 chr5 24196249 24196295 -178889237 + L1MB5 LINE L1 6101 6147 -27 1472 173 54 26 chr5 24196900 24197455 -178888077 - L1MC3 LINE L1 -2 7783 7077 1426 225 74 64 chr5 24197455 24197957 -178887575 - MER76 LTR ERV -147 541 35 342 237 52 30 chr5 24197962 24198097 -178887435 - L1M4 LINE L1 -2697 3449 3312 193 284 52 69 chr5 24198830 24198946 -178886586 + MER5A DNA MER1_type 70 183 -6 854 217 12 0 chr5 24199669 24199830 -178885702 + FRAM SINE Alu 1 162 -14 294 408 26 64 chr5 24200144 24200471 -178885061 + L2 LINE L2 2700 3016 -297 4129 146 12 1 chr5 24200471 24201142 -178884390 + L1PA15 LINE L1 5488 6165 0 294 408 26 64 chr5 24201142 24201191 -178884341 + L2 LINE L2 3016 3065 -248 324 65 0 0 chr5 24201217 24201263 -178884269 - MADE1 DNA Mariner -34 46 1 1856 234 53 40 chr5 24201324 24201453 -178884079 + LTR53 LTR ERVL 8 134 -385 2081 108 24 0 chr5 24201453 24201750 -178883782 - AluSq SINE Alu -9 304 1 1856 234 53 40 chr5 24201750 24202125 -178883407 + LTR53 LTR ERVL 134 519 0 1652 275 69 36 chr5 24202502 24202748 -178882784 + MLT1E2 LTR MaLR 26 263 -363 2311 58 0 67 chr5 24202748 24203076 -178882456 + AluY SINE Alu 2 307 -4 1652 275 69 36 chr5 24203076 24203411 -178882121 + MLT1E2 LTR MaLR 263 626 0 2262 69 0 3 chr5 24203948 24204237 -178881295 + AluY SINE Alu 1 288 -23 189 0 0 0 chr5 24204244 24204265 -178881267 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 408 145 41 0 chr5 24205125 24205209 -178880323 - L1M1 LINE L1 -618 5547 5452 956 128 14 0 chr5 24205231 24205379 -178880153 + AluSc SINE Alu 156 305 -4 23 0 0 0 chr5 24205385 24205408 -178880124 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr5 24206060 24206081 -178879451 + AT_rich Low_complexity Low_complexity 1 21 0 771 90 23 45 chr5 24206542 24206675 -178878857 - L1PA16 LINE L1 0 6166 6037 1078 197 14 14 chr5 24206678 24206891 -178878641 - L1PA16 LINE L1 -307 5859 5647 2400 186 14 10 chr5 24206894 24207717 -178877815 + L1PA16 LINE L1 4806 5626 -540 289 247 17 15 chr5 24208164 24208286 -178877246 - L1MC4 LINE L1 0 8042 7701 300 120 0 0 chr5 24208286 24208336 -178877196 + (CA)n Simple_repeat Simple_repeat 2 51 0 230 304 83 0 chr5 24208617 24208785 -178876747 - L1MC4a LINE L1 0 7808 7627 1533 216 62 10 chr5 24208841 24209257 -178876275 - L1MC4a LINE L1 -190 7618 7181 1062 240 146 21 chr5 24210779 24211163 -178874369 + MLT1C LTR MaLR 6 437 -30 1597 235 27 10 chr5 24211168 24211576 -178873956 + MLT1C-int LTR MaLR 19 433 -938 600 277 36 43 chr5 24211729 24211982 -178873550 - MER4B-int LTR ERV1 -2407 4351 4101 2318 85 0 16 chr5 24212356 24212663 -178872869 + AluSx SINE Alu 1 302 -10 210 171 0 0 chr5 24212685 24212720 -178872812 + (TA)n Simple_repeat Simple_repeat 1 35 0 759 190 110 112 chr5 24262930 24263357 -178822175 - L1MC4 LINE L1 -3 8039 7614 27 0 0 0 chr5 24263808 24263835 -178821697 + AT_rich Low_complexity Low_complexity 1 27 0 1605 266 100 21 chr5 24264170 24264699 -178820833 - MLT1E2 LTR MaLR 0 626 56 215 182 0 36 chr5 24265051 24265106 -178820426 + T-rich Low_complexity Low_complexity 2 54 0 2454 54 30 0 chr5 24265292 24265590 -178819942 + AluY SINE Alu 1 307 -4 546 339 9 14 chr5 24265902 24266121 -178819411 + LTR16A LTR ERVL 86 303 -147 6098 164 62 7 chr5 24266121 24267288 -178818244 + Tigger3b DNA MER2_type 1 1231 0 21 36 0 0 chr5 24268331 24268359 -178817173 + AT_rich Low_complexity Low_complexity 1 28 0 2239 239 29 63 chr5 24268575 24269260 -178816272 + LTR8 LTR ERV1 30 691 0 723 368 42 17 chr5 24269749 24270159 -178815373 - LTR16A LTR ERVL -13 437 18 198 103 0 0 chr5 24271086 24271115 -178814417 + (TG)n Simple_repeat Simple_repeat 2 30 0 504 335 30 15 chr5 24271296 24271499 -178814033 - HERVL LTR ERVL -1332 4322 4117 1563 259 38 79 chr5 24271959 24272075 -178813457 + L1MB5 LINE L1 3415 3534 -2612 240 35 0 0 chr5 24272075 24272104 -178813428 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1563 259 38 79 chr5 24272104 24272374 -178813158 + L1MB5 LINE L1 3534 3813 -2333 2129 107 10 10 chr5 24272374 24272683 -178812849 + AluSc SINE Alu 1 309 0 1563 259 38 79 chr5 24272683 24273080 -178812452 + L1MB5 LINE L1 3813 4167 -1979 1569 122 59 105 chr5 24273279 24273629 -178811903 + THE1C LTR MaLR 2 334 -41 2074 128 3 3 chr5 24273629 24273941 -178811591 - AluSx SINE Alu 0 312 1 1569 122 59 105 chr5 24273941 24273982 -178811550 + THE1C LTR MaLR 334 375 0 779 206 29 75 chr5 24274000 24274312 -178811220 + L1MB5 LINE L1 5186 5483 -687 2121 107 10 3 chr5 24274366 24274666 -178810866 + AluSg SINE Alu 1 302 -8 263 311 0 0 chr5 24274760 24274863 -178810669 + L1MA10 LINE L1 6169 6271 -63 1224 93 6 0 chr5 24274864 24275025 -178810507 + AluSg/x SINE Alu 137 298 -14 538 254 43 0 chr5 24276328 24276479 -178809053 - MLT1G1 LTR MaLR 0 595 426 626 226 56 58 chr5 24276492 24276769 -178808763 - MLT1G1 LTR MaLR -277 318 11 2569 208 103 33 chr5 24276937 24277668 -178807864 + LTR48 LTR ERV1 1 782 -5 1936 208 12 12 chr5 24277881 24278169 -178807363 + MER57A LTR ERV1 1 291 -112 3902 136 9 3 chr5 24278169 24278800 -178806732 - MER41B LTR ERV1 0 635 1 1936 208 12 12 chr5 24278800 24278914 -178806618 + MER57A LTR ERV1 290 403 0 200 200 0 22 chr5 24279731 24279776 -178805756 + (TG)n Simple_repeat Simple_repeat 2 45 0 1694 284 98 59 chr5 24280065 24281204 -178804328 + L1ME3A LINE L1 7 1189 -5353 1083 185 83 62 chr5 24281230 24281554 -178803978 + L1MB5 LINE L1 5581 5911 -263 1403 145 63 29 chr5 24281554 24281888 -178803644 - MER4A LTR ERV1 0 664 261 673 111 0 10 chr5 24281888 24281987 -178803545 - MER4A LTR ERV1 -566 98 1 671 261 90 8 chr5 24281987 24282221 -178803311 + L1MB5 LINE L1 5914 6166 -8 576 256 52 24 chr5 24283233 24283522 -178802010 + L1ME3A LINE L1 3370 3666 -2978 * 1307 268 58 60 chr5 24283519 24284603 -178800929 + L1ME3A LINE L1 4862 6664 -4 776 228 18 41 chr5 24284722 24284941 -178800591 + MER20 DNA MER1_type 6 219 0 22 35 0 0 chr5 24285487 24285516 -178800016 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr5 24287675 24287708 -178797824 + AT_rich Low_complexity Low_complexity 1 33 0 405 160 13 0 chr5 24287748 24287823 -178797709 - MADE1 DNA Mariner -4 76 1 556 343 25 21 chr5 24288491 24288777 -178796755 - MLT1J LTR MaLR -224 287 1 1841 150 122 18 chr5 24289090 24289476 -178796056 - MSTA LTR MaLR -2 426 1 207 0 0 0 chr5 24290410 24290433 -178795099 + (CATG)n Simple_repeat Simple_repeat 4 26 0 437 123 27 0 chr5 24290731 24290804 -178794728 - L1M4 LINE L1 -395 5779 5705 1064 211 13 0 chr5 24290812 24291040 -178794492 + L1MB2 LINE L1 5934 6164 -7 213 94 0 0 chr5 24291463 24291495 -178794037 + (TG)n Simple_repeat Simple_repeat 2 33 0 2097 74 32 11 chr5 24292271 24292556 -178792976 - AluY SINE Alu -20 291 1 320 296 17 26 chr5 24292607 24292722 -178792810 - LTR33 LTR ERVL -75 446 333 231 355 16 48 chr5 24292835 24292959 -178792573 - LTR33 LTR ERVL -362 159 40 2249 99 7 0 chr5 24293474 24293777 -178791755 + AluSp SINE Alu 1 305 -8 21 0 0 0 chr5 24293965 24293986 -178791546 + AT_rich Low_complexity Low_complexity 1 21 0 3818 45 31 0 chr5 24294325 24294811 -178790721 + L1PA3 LINE L1 5652 6152 -3 758 274 15 15 chr5 24295457 24295661 -178789871 + MER82 DNA MER2_type 448 651 -2 1643 156 26 7 chr5 24295778 24296048 -178789484 + AluSx SINE Alu 2 276 -36 207 0 0 0 chr5 24296050 24296073 -178789459 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1457 209 66 123 chr5 24296293 24297064 -178788468 + LTR8A LTR ERV1 1 727 0 21 0 0 0 chr5 24297290 24297311 -178788221 + AT_rich Low_complexity Low_complexity 1 21 0 377 238 79 0 chr5 24297429 24297530 -178788002 - MLT1E1 LTR MaLR -463 191 83 746 218 210 33 chr5 24297539 24297805 -178787727 + MLT1E1 LTR MaLR 205 423 -231 1175 203 60 100 chr5 24297805 24298274 -178787258 - LTR7 LTR ERV1 0 450 1 746 218 210 33 chr5 24298274 24298343 -178787189 + MLT1E1 LTR MaLR 423 654 0 1192 205 23 91 chr5 24299158 24299543 -178785989 - MLT1A1 LTR MaLR -3 362 4 234 305 42 84 chr5 24300309 24300548 -178784984 - MLT1H1 LTR MaLR -3 552 324 1191 201 31 20 chr5 24300653 24300946 -178784586 - L1MA9 LINE L1 -38 6274 5979 1501 244 63 6 chr5 24300946 24301311 -178784221 - MSTD LTR MaLR 0 396 11 2476 171 60 105 chr5 24301327 24302041 -178783491 - L1MA9 LINE L1 -335 5977 5296 2319 212 63 49 chr5 24302037 24302819 -178782713 + L1 LINE L1 4461 5253 -893 * 201 215 31 0 chr5 24302917 24302982 -178782550 + (TAAA)n Simple_repeat Simple_repeat 3 69 0 2017 119 6 38 chr5 24303014 24303332 -178782200 - AluSc SINE Alu -1 308 1 730 229 0 0 chr5 24305097 24305237 -178780295 + AluJb SINE Alu 159 298 -14 22 56 0 0 chr5 24306138 24306174 -178779358 + AT_rich Low_complexity Low_complexity 1 36 0 726 153 0 8 chr5 24306430 24306554 -178778978 - L1M2 LINE L1 -695 5617 5495 308 330 59 31 chr5 24306661 24306949 -178778583 + L1M4 LINE L1 4213 4508 -1638 230 261 29 14 chr5 24307015 24307084 -178778448 - LTR34 LTR ERV1 -4 695 626 542 133 19 19 chr5 24307192 24307297 -178778235 - MER4A LTR ERV1 -559 105 1 343 228 76 51 chr5 24307353 24307550 -178777982 + L1M4 LINE L1 4645 4846 -1300 1820 159 44 44 chr5 24307710 24308074 -178777458 + THE1B LTR MaLR 1 364 0 562 323 99 11 chr5 24308429 24308711 -178776821 + L2 LINE L2 2020 2326 -988 1971 182 8 0 chr5 24308712 24309063 -178776469 + MER47A DNA MER2_type 13 366 0 1092 321 124 24 chr5 24309068 24309953 -178775579 + L2 LINE L2 2329 3312 -1 236 91 61 30 chr5 24310163 24310229 -178775303 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 191 86 0 29 chr5 24310391 24310426 -178775106 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 1098 214 4 76 chr5 24310528 24310804 -178774728 - AluJo SINE Alu -56 256 1 367 379 35 0 chr5 24311143 24311539 -178773993 + L1ME3A LINE L1 5474 5883 -287 34 24 0 0 chr5 24311861 24311902 -178773630 + AT_rich Low_complexity Low_complexity 1 41 0 763 223 70 9 chr5 24312625 24312840 -178772692 + LTR40a LTR ERVL 1 228 -291 1206 240 101 59 chr5 24312840 24312893 -178772639 + MLT2B1 LTR ERVL 1 50 -470 1878 179 36 0 chr5 24312893 24313229 -178772303 - MER7A DNA MER2_type 0 346 1 1206 240 101 59 chr5 24313229 24313650 -178771882 + MLT2B1 LTR ERVL 50 495 -25 656 233 22 56 chr5 24313701 24313881 -178771651 + LTR40b LTR ERVL 289 462 0 25 51 0 0 chr5 24314389 24314428 -178771104 + AT_rich Low_complexity Low_complexity 1 39 0 1278 215 60 24 chr5 24314435 24314817 -178770715 - L1MC3 LINE L1 -24 7761 7366 985 281 107 28 chr5 24314821 24314847 -178770685 + MLT1D LTR MaLR 2 25 -480 1767 181 33 0 chr5 24314847 24315146 -178770386 + AluJb SINE Alu 1 309 -3 985 281 107 28 chr5 24315146 24315586 -178769946 + MLT1D LTR MaLR 25 505 0 419 162 0 0 chr5 24315594 24315662 -178769870 - L1MC3 LINE L1 -426 7359 7292 14854 229 38 25 chr5 24315665 24316473 -178769059 - L1PA15 LINE L1 -1 6815 6019 1936 108 6 99 chr5 24316473 24316817 -178768715 + AluSx SINE Alu 1 312 0 14854 229 38 25 chr5 24316817 24318899 -178766633 - L1PA15 LINE L1 -797 6019 3965 255 49 0 0 chr5 24318899 24318940 -178766592 - AluY SINE Alu 0 301 261 14854 229 38 25 chr5 24318940 24319170 -178766362 - L1PA15 LINE L1 -2851 3965 3739 2531 43 0 3 chr5 24319170 24319469 -178766063 - AluY SINE Alu -13 298 1 14854 229 38 25 chr5 24319469 24322977 -178762555 - L1PA15 LINE L1 -3077 3739 1 1142 235 65 14 chr5 24322989 24323359 -178762173 - L1MC3 LINE L1 -481 7304 6916 1326 207 4 15 chr5 24323400 24323670 -178761862 - AluJo SINE Alu -13 299 33 675 231 0 7 chr5 24323733 24323876 -178761656 - L1MC3 LINE L1 -954 6831 6690 1219 229 142 30 chr5 24323886 24324525 -178761007 - L1MCa LINE L1 -3947 2479 1847 208 346 0 0 chr5 24324774 24324852 -178760680 - L2 LINE L2 -4 3268 3191 29 47 0 0 chr5 24325456 24325499 -178760033 + AT_rich Low_complexity Low_complexity 1 43 0 276 288 12 56 chr5 24325817 24325977 -178759555 + L1MC4a LINE L1 3784 3936 -2210 188 213 16 0 chr5 24326041 24326102 -178759430 + (TA)n Simple_repeat Simple_repeat 2 63 0 251 277 27 20 chr5 24326367 24326515 -178759017 + (TA)n Simple_repeat Simple_repeat 2 150 0 384 111 33 11 chr5 24326676 24326766 -178758766 + (TTTAA)n Simple_repeat Simple_repeat 4 95 0 21 82 0 0 chr5 24326969 24327018 -178758514 + AT_rich Low_complexity Low_complexity 1 49 0 347 251 72 30 chr5 24327342 24327509 -178758023 + L1MC4a LINE L1 5256 5429 -2379 449 316 157 34 chr5 24327544 24327990 -178757542 + L1MC4a LINE L1 5519 6019 -1789 24 0 0 0 chr5 24328874 24328898 -178756634 + AT_rich Low_complexity Low_complexity 1 24 0 1139 152 87 15 chr5 24329394 24329703 -178755829 - MSTA LTR MaLR 0 428 1 5684 201 24 12 chr5 24329705 24330830 -178754702 - MSTA-int LTR MaLR -2 1578 440 3034 202 12 0 chr5 24330828 24331466 -178754066 - L1 LINE L1 -2150 3996 3351 * 242 311 104 44 chr5 24331806 24331989 -178753543 + L2 LINE L2 3117 3310 -3 2292 113 0 0 chr5 24332789 24333090 -178752442 + AluSc SINE Alu 1 301 -8 1681 161 152 6 chr5 24333726 24334061 -178751471 + MSTA LTR MaLR 1 384 -44 884 234 115 40 chr5 24334087 24334570 -178750962 + L1MC/D LINE L1 4979 5509 -883 1452 152 60 39 chr5 24334570 24334853 -178750679 + AluJb SINE Alu 1 289 -23 884 234 115 40 chr5 24334853 24335000 -178750532 + L1MC/D LINE L1 5509 5643 -749 1586 186 7 0 chr5 24335011 24335332 -178750200 - AluJb SINE Alu 0 323 1 662 203 8 0 chr5 24335348 24335466 -178750066 - FLAM_C SINE Alu -20 123 5 1188 223 38 15 chr5 24335468 24335809 -178749723 - L1 LINE L1 -814 5332 4984 2266 113 96 25 chr5 24335853 24336251 -178749281 + MSTA LTR MaLR 1 426 -2 268 241 0 0 chr5 24336607 24336665 -178748867 + L1PA12 LINE L1 2125 2182 -5399 685 281 41 0 chr5 24336942 24337188 -178748344 + L1PA12 LINE L1 2256 2511 -5070 2205 116 0 19 chr5 24339998 24340309 -178745223 - AluSp SINE Alu -8 305 1 1811 132 26 0 chr5 24340311 24340576 -178744956 - AluSx SINE Alu -10 302 31 411 21 0 0 chr5 24340576 24340624 -178744908 + (ATG)n Simple_repeat Simple_repeat 2 49 0 966 157 0 0 chr5 24340639 24340779 -178744753 - FRAM SINE Alu -31 145 6 1806 135 0 44 chr5 24340812 24341108 -178744424 + AluSx SINE Alu 1 283 -29 2020 147 13 13 chr5 24341282 24341594 -178743938 - AluSx SINE Alu 0 312 1 3154 164 25 21 chr5 24342567 24343195 -178742337 - L1MB2 LINE L1 -2 6169 5539 1657 193 25 17 chr5 24343195 24343548 -178741984 + MSTD LTR MaLR 3 358 -38 2184 119 3 0 chr5 24343548 24343851 -178741681 + AluSg SINE Alu 1 304 -6 252 200 0 0 chr5 24343864 24343919 -178741613 + MSTD LTR MaLR 342 396 0 4730 205 7 25 chr5 24343919 24344142 -178741390 - L1MB2 LINE L1 -626 5545 5319 1202 201 12 115 chr5 24344142 24344405 -178741127 - MLT1A2 LTR MaLR 0 374 168 1901 115 39 14 chr5 24344405 24344691 -178740841 - AluSx SINE Alu -19 293 1 1202 201 12 115 chr5 24344691 24344844 -178740688 - MLT1A2 LTR MaLR -206 168 1 4730 205 7 25 chr5 24344844 24344915 -178740617 - L1MB2 LINE L1 -852 5319 5248 2305 91 0 3 chr5 24344915 24345213 -178740319 - AluSq SINE Alu -16 297 1 4730 205 7 25 chr5 24345213 24345225 -178740307 - L1MB2 LINE L1 -923 5248 5237 625 208 15 8 chr5 24345225 24345355 -178740177 - FLAM_A SINE Alu -2 131 1 4730 205 7 25 chr5 24345355 24346333 -178739199 - L1MB2 LINE L1 -934 5237 4286 2304 84 0 0 chr5 24346333 24346620 -178738912 - AluY SINE Alu -24 287 1 4730 205 7 25 chr5 24346620 24346665 -178738867 - L1MB2 LINE L1 -1885 4286 4242 1236 99 0 0 chr5 24346668 24346830 -178738702 - AluSg/x SINE Alu -12 298 137 1608 64 0 68 chr5 24346935 24347155 -178738377 + AluY SINE Alu 96 300 -11 270 238 12 0 chr5 24347163 24347243 -178738289 - L1MB2 LINE L1 -2126 4020 3940 2169 114 0 3 chr5 24347487 24347795 -178737737 + AluSx SINE Alu 1 307 -5 437 254 17 66 chr5 24348120 24348293 -178737239 - MIR SINE MIR -37 225 68 1828 170 0 0 chr5 24349058 24349341 -178736191 - AluJb SINE Alu -27 285 3 1946 118 35 7 chr5 24349354 24349642 -178735890 - AluSq SINE Alu -15 298 3 2202 119 3 0 chr5 24349864 24350167 -178735365 + AluSq SINE Alu 3 306 -7 2186 133 0 0 chr5 24350185 24350487 -178735045 + AluSx SINE Alu 3 304 -8 1906 141 7 7 chr5 24351456 24351739 -178733793 - AluSx SINE Alu -29 283 1 297 331 83 0 chr5 24351745 24351878 -178733654 + MIR SINE MIR 1 144 -118 236 321 12 12 chr5 24352059 24352143 -178733389 + L2 LINE L2 3230 3313 0 22 56 0 0 chr5 24353610 24353646 -178731886 + AT_rich Low_complexity Low_complexity 1 36 0 442 308 151 19 chr5 24355022 24355347 -178730185 - L2 LINE L2 -25 3288 2921 229 299 143 7 chr5 24355405 24355552 -178729980 - L2 LINE L2 -690 2624 2458 181 262 36 48 chr5 24355679 24355763 -178729769 + L2 LINE L2 3184 3266 -6 3651 67 21 18 chr5 24358635 24359146 -178726386 - LTR10D LTR ERV1 0 513 1 195 266 0 0 chr5 24359147 24359211 -178726321 + (TG)n Simple_repeat Simple_repeat 2 65 0 1070 165 97 0 chr5 24359748 24359954 -178725578 - LTR10D-int LTR ERV1 -62 4874 4649 767 126 74 7 chr5 24359954 24360089 -178725443 - LTR23 LTR ERV1 -293 144 1 562 91 0 0 chr5 24360237 24360314 -178725218 - PABL_B LTR ERV1 0 667 591 5567 197 42 13 chr5 24360315 24362517 -178723015 + L1MA5 LINE L1 4042 6300 0 1069 92 1 6 chr5 24363112 24363285 -178722247 + L1P5 LINE L1 5425 5598 -553 262 320 172 34 chr5 24363518 24363809 -178721723 - L2 LINE L2 -92 3221 2891 372 282 0 0 chr5 24363909 24363994 -178721538 - L2 LINE L2 -611 2703 2619 423 356 20 0 chr5 24365649 24365795 -178719737 - MIR SINE MIR -12 250 102 577 152 10 0 chr5 24366824 24366923 -178718609 + MLT1C LTR MaLR 1 100 -367 29 28 0 0 chr5 24368219 24368255 -178717277 + AT_rich Low_complexity Low_complexity 1 36 0 1956 136 9 9 chr5 24368290 24368614 -178716918 - L1PA14 LINE L1 -2 6159 5836 225 351 98 57 chr5 24369959 24370642 -178714890 + L2 LINE L2 958 1668 -1646 292 325 64 32 chr5 24370931 24371088 -178714444 + L2 LINE L2 2622 2783 -531 2020 121 3 51 chr5 24371947 24372121 -178713411 - AluSq SINE Alu -11 302 148 1947 126 36 0 chr5 24372121 24372422 -178713110 - AluSx SINE Alu 0 312 1 2020 121 3 51 chr5 24372422 24372562 -178712970 - AluSq SINE Alu -165 148 3 27 29 0 0 chr5 24372962 24372996 -178712536 + AT_rich Low_complexity Low_complexity 1 34 0 10710 245 38 40 chr5 24372996 24374092 -178711440 - L1PA14 LINE L1 -5 7594 6497 1796 173 7 3 chr5 24374092 24374387 -178711145 - AluSx SINE Alu -16 296 1 10710 245 38 40 chr5 24374387 24376403 -178709129 - L1PA14 LINE L1 -1102 6497 4504 2126 116 3 16 chr5 24376403 24376714 -178708818 - AluSp SINE Alu -6 307 1 10710 245 38 40 chr5 24376714 24378391 -178707141 - L1PA14 LINE L1 -3095 4504 2825 423 0 0 0 chr5 24378863 24378910 -178706622 + (CA)n Simple_repeat Simple_repeat 2 48 0 37 52 0 0 chr5 24378935 24378993 -178706539 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr5 24379115 24379137 -178706395 + AT_rich Low_complexity Low_complexity 1 22 0 3060 183 32 32 chr5 24379877 24380527 -178705005 + MER39B LTR ERV1 1 650 -3 242 275 78 82 chr5 24380865 24381291 -178704241 + L1M4 LINE L1 4634 5057 -1089 22 0 0 0 chr5 24381392 24381414 -178704118 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr5 24382404 24382426 -178703106 + AT_rich Low_complexity Low_complexity 1 22 0 38 22 0 0 chr5 24382690 24382735 -178702797 + AT_rich Low_complexity Low_complexity 1 45 0 4953 162 21 14 chr5 24382751 24383891 -178701641 - L1PA15 LINE L1 -17 6148 5005 1995 120 17 3 chr5 24383912 24384212 -178701320 + AluSc SINE Alu 1 304 -5 286 282 0 0 chr5 24384690 24384761 -178700771 + L1MEc LINE L1 1664 1734 -4662 333 47 0 0 chr5 24385844 24385887 -178699645 + (CA)n Simple_repeat Simple_repeat 1 43 0 236 250 14 14 chr5 24386874 24386946 -178698586 + (TA)n Simple_repeat Simple_repeat 2 73 0 22 0 0 0 chr5 24388736 24388758 -178696774 + AT_rich Low_complexity Low_complexity 1 22 0 627 144 18 0 chr5 24389431 24389542 -178695990 - L1MB4 LINE L1 -2 6178 6066 1797 139 3 52 chr5 24389552 24389736 -178695796 + AluJo SINE Alu 2 167 -145 366 23 0 0 chr5 24389736 24389779 -178695753 + (TG)n Simple_repeat Simple_repeat 1 43 0 1797 139 3 52 chr5 24389779 24389903 -178695629 + AluJo SINE Alu 167 295 -17 26 30 0 0 chr5 24389913 24389946 -178695586 + AT_rich Low_complexity Low_complexity 1 33 0 231 103 0 0 chr5 24390113 24390152 -178695380 + (CA)n Simple_repeat Simple_repeat 2 40 0 279 294 0 12 chr5 24390353 24390438 -178695094 + CT-rich Low_complexity Low_complexity 3 86 0 456 274 26 7 chr5 24390849 24391002 -178694530 - L1ME3A LINE L1 -14 6156 6001 458 68 41 14 chr5 24391223 24391296 -178694236 + MADE1 DNA Mariner 6 80 0 270 161 25 37 chr5 24391470 24391536 -178693996 + (TA)n Simple_repeat Simple_repeat 2 68 -13 180 0 0 0 chr5 24391536 24391556 -178693976 + (TG)n Simple_repeat Simple_repeat 2 21 0 270 161 25 37 chr5 24391556 24391570 -178693962 + (TA)n Simple_repeat Simple_repeat 68 81 0 228 172 0 0 chr5 24392250 24392308 -178693224 + (TG)n Simple_repeat Simple_repeat 2 59 0 562 339 149 45 chr5 24392539 24393209 -178692323 + L1M4c LINE L1 1093 1984 -4552 1023 299 60 37 chr5 24393406 24393708 -178691824 + L1MCb LINE L1 1 322 -5723 1998 60 38 88 chr5 24393708 24394026 -178691506 - AluSq SINE Alu -11 302 1 1023 299 60 37 chr5 24394026 24394258 -178691274 + L1MCb LINE L1 322 547 -5498 1317 183 15 74 chr5 24394305 24394643 -178690889 + L1MA10 LINE L1 6016 6333 -1 655 258 90 39 chr5 24394677 24394910 -178690622 + L1MCb LINE L1 552 796 -5249 23 54 0 0 chr5 24394993 24395030 -178690502 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr5 24395501 24395525 -178690007 + AT_rich Low_complexity Low_complexity 1 24 0 5744 219 46 76 chr5 24395572 24396734 -178688798 - L1MC3 LINE L1 0 7793 6826 1931 152 152 8 chr5 24396734 24397108 -178688424 + MSTA LTR MaLR 1 428 0 5744 219 46 76 chr5 24397108 24398067 -178687465 - L1MC3 LINE L1 -967 6826 5840 538 157 43 9 chr5 24398084 24398199 -178687333 - L1MB4 LINE L1 -1 6179 6061 420 278 25 101 chr5 24398245 24398522 -178687010 + L2 LINE L2 3041 3296 -17 1848 125 10 35 chr5 24399485 24399807 -178685725 + AluSx SINE Alu 1 315 0 21 0 0 0 chr5 24400513 24400534 -178684998 + AT_rich Low_complexity Low_complexity 1 21 0 31 82 0 0 chr5 24400841 24400914 -178684618 + AT_rich Low_complexity Low_complexity 1 73 0 2076 139 3 0 chr5 24401006 24401309 -178684223 + AluSq SINE Alu 1 304 -9 212 0 0 35 chr5 24401312 24401341 -178684191 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1970 71 0 97 chr5 24401792 24402139 -178683393 + AluY SINE Alu 1 317 0 908 308 99 47 chr5 24402858 24403332 -178682200 + L2 LINE L2 2568 3016 -297 396 0 0 0 chr5 24403332 24403376 -178682156 + (TG)n Simple_repeat Simple_repeat 2 45 0 908 308 99 47 chr5 24403376 24403392 -178682140 + L2 LINE L2 3016 3030 -283 2208 135 0 29 chr5 24403392 24403716 -178681816 - L1PB4 LINE L1 -2 6154 5822 207 0 0 0 chr5 24403716 24403739 -178681793 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1918 108 0 0 chr5 24403741 24404000 -178681532 - AluSc SINE Alu -30 279 21 2208 135 0 29 chr5 24404000 24404046 -178681486 - L1PB4 LINE L1 -335 5821 5790 443 33 16 0 chr5 24404046 24404107 -178681425 + (TA)n Simple_repeat Simple_repeat 1 62 0 908 308 99 47 chr5 24404117 24404314 -178681218 + L2 LINE L2 3030 3282 -31 1858 204 22 3 chr5 24404883 24405241 -178680291 - MLT1A1 LTR MaLR 0 365 1 28 29 0 0 chr5 24405616 24405651 -178679881 + AT_rich Low_complexity Low_complexity 1 35 0 1498 217 22 22 chr5 24407601 24407965 -178677567 - MLT1A1 LTR MaLR 0 365 2 216 256 26 13 chr5 24409633 24409711 -178675821 + (AATAG)n Simple_repeat Simple_repeat 4 82 0 477 230 40 6 chr5 24410632 24410769 -178674763 + L1MC4 LINE L1 6848 7042 -810 430 291 158 0 chr5 24411229 24411432 -178674100 + MIR SINE MIR 12 246 -16 222 342 107 25 chr5 24411444 24411640 -178673892 - MIR SINE MIR -2 260 49 22 0 0 0 chr5 24415461 24415483 -178670049 + AT_rich Low_complexity Low_complexity 1 22 0 31 58 0 0 chr5 24416421 24416473 -178669059 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr5 24416896 24416924 -178668608 + AT_rich Low_complexity Low_complexity 1 28 0 442 332 49 40 chr5 24416931 24417157 -178668375 + MIR SINE MIR 5 232 -30 216 296 112 51 chr5 24417467 24417663 -178667869 + MIR SINE MIR 25 232 -30 260 363 38 25 chr5 24418276 24418433 -178667099 + L2 LINE L2 2865 3023 -290 1636 281 45 37 chr5 24419431 24420003 -178665529 - MLT1E LTR MaLR 0 593 17 3451 127 14 5 chr5 24420003 24420590 -178664942 + L1PB1 LINE L1 5582 6173 0 392 350 33 47 chr5 24420626 24420926 -178664606 + L2 LINE L2 2867 3162 -151 2986 168 29 20 chr5 24421701 24421740 -178663792 - MLT2B3 LTR ERVL 0 554 517 589 58 23 0 chr5 24421740 24421826 -178663706 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 2986 168 29 20 chr5 24421826 24422335 -178663197 - MLT2B3 LTR ERVL -37 517 1 248 231 42 28 chr5 24422449 24422592 -178662940 + L1M4 LINE L1 2146 2290 -3856 236 274 94 9 chr5 24422654 24422760 -178662772 - LTR50 LTR ERVL -61 734 620 381 286 16 0 chr5 24423050 24423176 -178662356 - ERVL LTR ERVL -1731 4033 3906 33 0 0 0 chr5 24423252 24423285 -178662247 + AT_rich Low_complexity Low_complexity 1 33 0 301 270 115 27 chr5 24424879 24425136 -178660396 - L1M4 LINE L1 -1068 5078 4802 418 308 84 41 chr5 24425200 24425593 -178659939 - L1M4 LINE L1 -2449 3697 3288 45 19 0 0 chr5 24426118 24426170 -178659362 + AT_rich Low_complexity Low_complexity 1 52 0 30 89 0 0 chr5 24426239 24426318 -178659214 + AT_rich Low_complexity Low_complexity 1 79 0 348 351 86 34 chr5 24426572 24426897 -178658635 + L1MEc LINE L1 92 433 -5963 2065 135 0 3 chr5 24426973 24427284 -178658248 - AluSg SINE Alu 0 310 1 1003 208 63 4 chr5 24427457 24427726 -178657806 - L1MA7 LINE L1 0 6291 6007 1271 276 70 37 chr5 24427733 24427989 -178657543 + L1MEc LINE L1 1866 2112 -4103 392 66 0 16 chr5 24427989 24428050 -178657482 + (TA)n Simple_repeat Simple_repeat 2 61 0 2189 171 18 0 chr5 24428051 24428432 -178657100 + MLT1B LTR MaLR 3 390 0 1271 276 70 37 chr5 24428432 24428967 -178656565 + L1MEc LINE L1 2112 2672 -3543 1141 259 7 20 chr5 24428967 24429272 -178656260 + AluJo SINE Alu 2 302 0 1271 276 70 37 chr5 24429272 24429652 -178655880 + L1MEc LINE L1 2672 3038 -3177 351 0 0 0 chr5 24429776 24429815 -178655717 + (TG)n Simple_repeat Simple_repeat 2 40 0 30 27 0 0 chr5 24429815 24429852 -178655680 + AT_rich Low_complexity Low_complexity 1 37 0 2655 82 132 7 chr5 24429852 24430255 -178655277 - L1PA8A LINE L1 -10 6121 5669 1944 100 36 0 chr5 24430253 24430606 -178654926 + L1PA8A LINE L1 5086 5448 -683 * 873 291 73 17 chr5 24430609 24431141 -178654391 + L1MEc LINE L1 3362 3923 -2292 1755 206 39 157 chr5 24431148 24431539 -178653993 + L1PB3 LINE L1 5458 5893 -261 519 49 25 62 chr5 24431539 24431620 -178653912 + MADE1 DNA Mariner 1 78 -2 1755 206 39 157 chr5 24431620 24431886 -178653646 + L1PB3 LINE L1 5893 6009 -145 2141 63 19 51 chr5 24431886 24432201 -178653331 + AluY SINE Alu 1 305 -6 1755 206 39 157 chr5 24432201 24432332 -178653200 + L1PB3 LINE L1 6009 6154 0 594 290 109 19 chr5 24432337 24432713 -178652819 + L1MEc LINE L1 3908 4317 -1898 393 306 36 30 chr5 24432716 24433053 -178652479 + L1MEc LINE L1 4335 4673 -1542 23 33 0 0 chr5 24435671 24435701 -178649831 + AT_rich Low_complexity Low_complexity 1 30 0 204 266 57 65 chr5 24436112 24436236 -178649296 - L2 LINE L2 -54 3259 3137 2404 65 0 23 chr5 24436903 24437212 -178648320 + AluSc SINE Alu 1 302 -7 46 45 0 0 chr5 24438189 24438256 -178647276 + AT_rich Low_complexity Low_complexity 1 67 0 5888 175 39 36 chr5 24438256 24440764 -178644768 - L1MA2 LINE L1 0 7723 5229 1687 212 59 29 chr5 24440764 24441304 -178644228 - MLT2A2 LTR ERVL 0 554 1 1816 152 58 19 chr5 24441313 24441674 -178643858 - THE1C LTR MaLR 0 375 1 4541 136 48 11 chr5 24441685 24442412 -178643120 - THE1C-int LTR MaLR -12 1568 815 4023 185 28 5 chr5 24442417 24443535 -178641997 - L1MA2 LINE L1 -3259 4306 2066 1661 204 29 66 chr5 24443535 24443977 -178641555 + MSTB LTR MaLR 1 426 0 5856 218 24 3 chr5 24443977 24445191 -178640341 + MSTB-int LTR MaLR 1 1239 -412 1707 134 4 0 chr5 24445191 24445445 -178640087 - MER51B LTR ERV1 0 377 123 189 0 0 0 chr5 24445545 24445566 -178639966 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3543 83 16 16 chr5 24445567 24446071 -178639461 - L1PA7 LINE L1 -13 6141 5638 3857 62 10 2 chr5 24447255 24447753 -178637779 - L1PA5 LINE L1 -2 6152 5651 915 56 8 8 chr5 24447753 24447879 -178637653 + L1P LINE L1 4464 4589 -1557 1146 97 11 28 chr5 24448377 24448553 -178636979 + AluY SINE Alu 1 173 -138 946 99 0 0 chr5 24448649 24448780 -178636752 + AluY SINE Alu 173 303 -8 646 130 0 0 chr5 24449970 24450070 -178635462 - L1PA5 LINE L1 -632 5534 5435 5083 211 184 23 chr5 24450070 24451352 -178634180 + MER52A LTR ERV1 1 1488 -267 2408 43 7 10 chr5 24451492 24451796 -178633736 + AluY SINE Alu 5 307 -4 180 0 0 0 chr5 24451833 24451853 -178633679 + (CAA)n Simple_repeat Simple_repeat 2 21 0 258 317 16 24 chr5 24454546 24454669 -178630863 + L1ME LINE L1 290 411 -5659 3910 140 102 25 chr5 24455237 24456278 -178629254 + pTR5 LTR ERV1 1065 2606 0 2547 123 0 3 chr5 24456526 24456891 -178628641 + THE1B LTR MaLR 1 364 0 1148 225 126 30 chr5 24457716 24458049 -178627483 - MLT1A1 LTR MaLR 0 365 1 189 0 0 0 chr5 24459522 24459543 -178625989 + (TA)n Simple_repeat Simple_repeat 1 21 0 201 370 49 0 chr5 24460606 24460687 -178624845 + L2 LINE L2 2932 3016 -297 516 215 8 8 chr5 24460851 24460972 -178624560 + MSTB-int LTR MaLR 1530 1650 -1 1551 241 66 3 chr5 24460973 24461354 -178624178 + MSTB LTR MaLR 1 405 -21 246 319 32 0 chr5 24461790 24461884 -178623648 - HAL1b LINE L1 -975 373 277 2100 129 3 7 chr5 24462226 24462536 -178622996 - AluSq SINE Alu 0 313 5 3755 117 28 3 chr5 24462790 24463355 -178622177 - LTR19B LTR ERV1 -1 579 1 297 208 0 0 chr5 24463903 24463975 -178621557 + (TA)n Simple_repeat Simple_repeat 2 73 0 325 287 0 0 chr5 24463978 24464065 -178621467 + L1MC4 LINE L1 6615 6701 -1341 * 338 293 40 10 chr5 24463987 24464086 -178621446 - L1MC4 LINE L1 -1337 6705 6604 22 0 0 0 chr5 24464261 24464283 -178621249 + AT_rich Low_complexity Low_complexity 1 22 0 1536 113 14 102 chr5 24464424 24464707 -178620825 - AluSx SINE Alu -25 287 30 1140 187 4 41 chr5 24465345 24465612 -178619920 - pTR5 LTR ERV1 -1441 997 741 733 25 50 118 chr5 24465818 24465937 -178619595 - HERVK14 LTR ERVK 0 5945 5835 326 191 0 20 chr5 24465937 24466007 -178619525 - MER41C LTR ERV1 -493 61 6 3460 53 6 4 chr5 24466007 24466685 -178618847 - HERVK3 LTR ERVK -181 5764 5013 678 108 0 0 chr5 24466684 24466777 -178618755 - HERVK3 LTR ERVK -1545 4400 4308 * 288 91 254 0 chr5 24466995 24467050 -178618482 - HERVK3 LTR ERVK -7025 218 150 200 203 27 54 chr5 24467057 24467131 -178618401 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 3225 101 37 0 chr5 24467794 24468249 -178617283 - HERVK3 LTR ERVK -3769 2176 1705 5397 70 1 10 chr5 24468283 24468988 -178616544 - HERVK3 LTR ERVK -5246 699 1 2107 99 84 51 chr5 24468988 24469387 -178616145 - LTR14B LTR ERVK 0 608 3 1364 66 61 20 chr5 24469951 24470147 -178615385 - AluY SINE Alu 0 311 108 471 274 116 4 chr5 24471016 24471257 -178614275 + L1PA16 LINE L1 8 275 -7306 4066 141 21 20 chr5 24471259 24471968 -178613564 - MER50 LTR ERV1 -24 710 1 246 311 94 80 chr5 24471968 24472533 -178612999 + L1PA16 LINE L1 272 844 -6737 * 819 291 35 43 chr5 24472520 24472888 -178612644 + L1PA16 LINE L1 1817 2181 -5400 4278 240 34 43 chr5 24473073 24475269 -178610263 + L1PA16 LINE L1 2318 4531 -3053 4300 170 56 49 chr5 24475292 24476325 -178609207 + L1PA16 LINE L1 6185 7223 -381 293 49 49 16 chr5 24476325 24476386 -178609146 + (TA)n Simple_repeat Simple_repeat 1 63 0 4300 170 56 49 chr5 24476386 24476765 -178608767 + L1PA16 LINE L1 7223 7598 -6 1828 181 18 64 chr5 24478560 24479013 -178606519 + MER31A LTR ERV1 1 432 -53 23 33 0 0 chr5 24479514 24479544 -178605988 + AT_rich Low_complexity Low_complexity 1 30 0 35 98 0 0 chr5 24479658 24479770 -178605762 + AT_rich Low_complexity Low_complexity 1 112 0 1942 129 16 13 chr5 24480023 24480332 -178605200 - AluSx SINE Alu -2 310 1 2151 117 0 3 chr5 24480385 24480683 -178604849 - AluSg SINE Alu -13 297 1 545 274 55 92 chr5 24481015 24481395 -178604137 + L2 LINE L2 2945 3310 -3 924 190 11 17 chr5 24483119 24483298 -178602234 + MER52A LTR ERV1 1578 1755 0 3379 193 38 22 chr5 24483298 24484203 -178601329 - L1P4 LINE L1 -728 5438 4533 3011 161 72 2 chr5 24484204 24484774 -178600758 + L1PA16 LINE L1 5547 6156 -10 414 100 0 0 chr5 24484774 24484834 -178600698 + (TA)n Simple_repeat Simple_repeat 1 60 0 238 155 10 117 chr5 24484853 24484912 -178600620 + L1MA8 LINE L1 6180 6225 -66 2175 110 0 10 chr5 24484912 24485213 -178600319 + AluSx SINE Alu 1 298 -14 238 155 10 117 chr5 24485213 24485256 -178600276 + L1MA8 LINE L1 6225 6271 -20 28 0 0 0 chr5 24485273 24485301 -178600231 + AT_rich Low_complexity Low_complexity 1 28 0 614 316 10 0 chr5 24486048 24486257 -178599275 + L1MEc LINE L1 112 322 -6074 1065 193 24 58 chr5 24486268 24486563 -178598969 + L1MEc LINE L1 646 930 -5466 782 298 114 19 chr5 24486659 24487341 -178598191 + L1MEc LINE L1 1115 1861 -4535 483 295 73 91 chr5 24487713 24488274 -178597258 - L2 LINE L2 -67 3246 2687 440 329 20 63 chr5 24488379 24488631 -178596901 - LTR33 LTR ERVL -280 241 1 185 356 69 0 chr5 24488632 24488719 -178596813 + L2 LINE L2 3186 3278 -35 210 363 0 0 chr5 24489036 24489116 -178596416 + L2 LINE L2 3226 3305 -8 2494 44 0 0 chr5 24489183 24489478 -178596054 + AluY SINE Alu 1 295 -16 28 29 0 0 chr5 24490252 24490287 -178595245 + AT_rich Low_complexity Low_complexity 1 35 0 30 59 0 0 chr5 24491197 24491248 -178594284 + AT_rich Low_complexity Low_complexity 1 51 0 377 318 71 6 chr5 24491275 24491445 -178594087 - MIR SINE MIR -74 188 8 1518 121 45 28 chr5 24492325 24492615 -178592917 - L1PA11 LINE L1 0 6174 5880 470 81 0 0 chr5 24492615 24492677 -178592855 + L1P4 LINE L1 5586 5647 -527 741 267 180 66 chr5 24492883 24493310 -178592222 + MLT2F LTR ERVL 186 661 -2 26 50 0 0 chr5 24494058 24494098 -178591434 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr5 24494315 24494346 -178591186 + AT_rich Low_complexity Low_complexity 1 31 0 2056 134 7 3 chr5 24494925 24495230 -178590302 - AluSg SINE Alu -4 306 1 21 82 0 0 chr5 24495580 24495629 -178589903 + AT_rich Low_complexity Low_complexity 1 49 0 387 296 195 6 chr5 24495756 24495915 -178589617 - MER5A DNA MER1_type 0 189 1 360 231 44 0 chr5 24496036 24496127 -178589405 - MIR SINE MIR -57 205 111 257 288 0 0 chr5 24497140 24497213 -178588319 + L1MDa LINE L1 70 142 -6398 2460 42 13 7 chr5 24497324 24497633 -178587899 - AluY SINE Alu 0 311 1 186 43 0 0 chr5 24497713 24497736 -178587796 + (GA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr5 24498161 24498183 -178587349 + AT_rich Low_complexity Low_complexity 1 22 0 1774 135 54 14 chr5 24498361 24498658 -178586874 - AluSg SINE Alu -1 309 1 24 0 0 0 chr5 24498959 24498983 -178586549 + AT_rich Low_complexity Low_complexity 1 24 0 661 285 0 22 chr5 24499162 24499341 -178586191 + MIR SINE MIR 32 206 -56 520 231 240 4 chr5 24499558 24499600 -178585932 - MLT1E1 LTR MaLR -5 649 618 195 42 0 0 chr5 24499600 24499624 -178585908 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 520 231 240 4 chr5 24499624 24499931 -178585601 - MLT1E1 LTR MaLR -36 618 178 304 235 94 0 chr5 24499958 24500043 -178585489 - MLT1E1 LTR MaLR -557 97 5 992 258 79 170 chr5 24500075 24501229 -178584303 - MLT1E1-int LTR MaLR -30 1341 293 307 293 57 13 chr5 24501234 24501391 -178584141 - MLT1E1-int LTR MaLR -1207 164 1 766 327 8 4 chr5 24501402 24501665 -178583867 - MLT1E1 LTR MaLR -8 646 383 703 286 73 8 chr5 24501715 24501960 -178583572 - MLT1E1 LTR MaLR -393 261 1 478 273 121 0 chr5 24502234 24502399 -178583133 + L1ME3A LINE L1 5651 5835 -335 1063 197 75 0 chr5 24502789 24503010 -178582522 + MLT1B LTR MaLR 3 240 -150 2276 197 58 4 chr5 24503010 24503493 -178582039 - LTR22 LTR ERVK 0 509 1 844 206 0 7 chr5 24503495 24503650 -178581882 + MLT1B LTR MaLR 236 389 -1 323 250 134 58 chr5 24503651 24503823 -178581709 + L2 LINE L2 3129 3313 0 192 111 0 0 chr5 24504113 24504149 -178581383 + (TG)n Simple_repeat Simple_repeat 2 37 0 2046 127 7 0 chr5 24504409 24504717 -178580815 - AluSg SINE Alu 0 310 1 181 288 30 0 chr5 24506015 24506081 -178579451 + MIR SINE MIR 74 141 -121 25 0 0 0 chr5 24506141 24506166 -178579366 + AT_rich Low_complexity Low_complexity 1 25 0 268 356 55 12 chr5 24506918 24507081 -178578451 - MIR SINE MIR -44 218 49 213 39 0 0 chr5 24507820 24507846 -178577686 + (T)n Simple_repeat Simple_repeat 1 26 0 1710 118 24 0 chr5 24507846 24508092 -178577440 - AluSg SINE Alu -54 256 5 23 68 0 0 chr5 24508179 24508223 -178577309 + AT_rich Low_complexity Low_complexity 1 44 0 407 319 39 48 chr5 24508290 24508519 -178577013 - MIR SINE MIR -28 234 8 292 317 88 19 chr5 24509021 24509226 -178576306 - L2 LINE L2 -151 3162 2944 23 33 0 0 chr5 24509575 24509605 -178575927 + AT_rich Low_complexity Low_complexity 1 30 0 763 184 68 21 chr5 24511370 24511560 -178573972 + MER57-int LTR ERV1 5622 5820 -1717 5378 228 31 21 chr5 24511879 24513181 -178572351 + MER57-int LTR ERV1 5824 7137 -400 661 153 32 8 chr5 24513187 24513311 -178572221 + LTR54B LTR ERV1 1 127 -371 2230 116 0 0 chr5 24515819 24516121 -178569411 - AluSx SINE Alu -10 302 1 246 229 0 0 chr5 24516206 24516254 -178569278 + L1PA12 LINE L1 8 55 -7526 1282 281 133 8 chr5 24518010 24518523 -178567009 + MER119 DNA MER1_type 7 583 0 235 335 129 31 chr5 24518523 24518717 -178566815 + MIR SINE MIR 24 236 -26 30 83 0 0 chr5 24519269 24519341 -178566191 + AT_rich Low_complexity Low_complexity 1 72 0 31 26 0 0 chr5 24520185 24520223 -178565309 + AT_rich Low_complexity Low_complexity 1 38 0 2009 151 0 0 chr5 24520272 24520577 -178564955 - AluSx SINE Alu -7 305 1 525 280 89 48 chr5 24520733 24521004 -178564528 + L1MD2 LINE L1 5860 6141 -218 302 343 22 14 chr5 24521013 24521159 -178564373 + L1MC4a LINE L1 6202 7807 -1 27 49 0 0 chr5 24521767 24521808 -178563724 + AT_rich Low_complexity Low_complexity 1 41 0 2262 93 0 0 chr5 24521854 24522145 -178563387 + AluSg SINE Alu 1 291 -19 21 36 0 0 chr5 24522159 24522187 -178563345 + AT_rich Low_complexity Low_complexity 1 28 0 207 205 39 13 chr5 24522725 24522803 -178562729 + (TA)n Simple_repeat Simple_repeat 2 81 0 2300 59 10 3 chr5 24522932 24523220 -178562312 + AluY SINE Alu 3 292 -19 699 230 40 50 chr5 24523694 24523894 -178561638 + MER49 LTR ERV1 1 198 -725 252 297 11 0 chr5 24523900 24523991 -178561541 - L1MC4 LINE L1 -1339 6703 6612 234 205 84 12 chr5 24523921 24524004 -178561528 + L1MC4 LINE L1 6615 6703 -1339 * 378 177 0 13 chr5 24524014 24524093 -178561439 + MER49 LTR ERV1 185 262 -661 1208 274 20 15 chr5 24524134 24524477 -178561055 + MER4D LTR ERV1 549 893 -10 2083 149 0 0 chr5 24525429 24525772 -178559760 - AluSx SINE Alu 0 312 4 247 321 9 18 chr5 24526026 24526135 -178559397 - MER34 LTR ERV1 -3 539 432 211 229 0 0 chr5 24526797 24526845 -178558687 + (TA)n Simple_repeat Simple_repeat 1 48 0 304 299 65 60 chr5 24527234 24527418 -178558114 + L1MEd LINE L1 1011 1195 -4924 269 301 27 75 chr5 24527671 24527857 -178557675 - L2 LINE L2 -25 3288 3112 1387 201 28 45 chr5 24528039 24528392 -178557140 - MLT1A1 LTR MaLR -15 350 4 674 284 111 24 chr5 24528393 24528734 -178556798 + MLT1G LTR MaLR 136 506 -84 236 303 0 0 chr5 24529344 24529410 -178556122 + HAL1b LINE L1 421 486 -862 525 140 11 5 chr5 24529513 24529604 -178555928 + MSTB LTR MaLR 2 82 -344 496 196 20 10 chr5 24529612 24529714 -178555818 + L1PB4 LINE L1 5687 5789 -367 232 186 0 0 chr5 24529720 24529763 -178555769 + L1MC4 LINE L1 6658 6700 -1342 301 283 18 26 chr5 24529784 24529897 -178555635 - L1MC4 LINE L1 -1339 6703 6592 672 111 16 47 chr5 24529927 24530185 -178555347 + (TA)n Simple_repeat Simple_repeat 1 249 0 251 209 0 50 chr5 24530212 24530351 -178555181 + (TA)n Simple_repeat Simple_repeat 1 132 0 1874 162 11 35 chr5 24530360 24530736 -178554796 + L1PB4 LINE L1 5789 6155 -1 274 275 0 0 chr5 24530753 24530839 -178554693 + L1MEd LINE L1 2672 2757 -3372 225 0 0 0 chr5 24531690 24531715 -178553817 + (A)n Simple_repeat Simple_repeat 1 25 0 261 98 0 0 chr5 24533004 24533045 -178552487 + (TG)n Simple_repeat Simple_repeat 2 42 0 5081 36 0 3 chr5 24533145 24533758 -178551774 + L1PA4 LINE L1 5545 6155 0 231 180 11 22 chr5 24534110 24534199 -178551333 + (TA)n Simple_repeat Simple_repeat 2 89 0 291 336 135 45 chr5 24534264 24534576 -178550956 - L2 LINE L2 -421 2893 2554 2065 115 54 0 chr5 24534631 24534926 -178550606 + AluSq SINE Alu 1 311 -2 293 211 87 124 chr5 24535361 24535522 -178550010 + MIR SINE MIR 18 172 -90 282 125 0 0 chr5 24535561 24535609 -178549923 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 357 82 0 0 chr5 24535610 24535659 -178549873 + (TAGG)n Simple_repeat Simple_repeat 2 50 0 251 200 50 0 chr5 24536570 24536630 -178548902 + CT-rich Low_complexity Low_complexity 1 63 0 656 177 7 0 chr5 24536821 24536962 -178548570 + (TAGA)n Simple_repeat Simple_repeat 1 142 0 380 381 122 17 chr5 24536978 24537203 -178548329 + L2 LINE L2 2728 2928 -385 2527 123 0 18 chr5 24537203 24537585 -178547947 + THE1C LTR MaLR 1 375 0 380 381 122 17 chr5 24537585 24537887 -178547645 + L2 LINE L2 2928 3305 -8 562 185 0 0 chr5 24538071 24538179 -178547353 - L1MA3 LINE L1 0 6305 6198 1966 125 14 54 chr5 24538179 24538532 -178547000 + THE1B LTR MaLR 1 339 -25 267 152 0 0 chr5 24538571 24538617 -178546915 + (TA)n Simple_repeat Simple_repeat 1 46 0 9912 65 1 1 chr5 24538617 24540965 -178544567 - L1PA6 LINE L1 -15 6139 3793 5042 90 4 6 chr5 24540956 24542095 -178543437 - L1PA6 LINE L1 -2741 3405 2367 * 6834 79 3 8 chr5 24542160 24543099 -178542433 + L1P LINE L1 1536 2470 -3676 274 149 0 15 chr5 24543099 24543153 -178542379 + THE1A LTR MaLR 317 355 0 3624 88 8 4 chr5 24543153 24543655 -178541877 + THE1A-int LTR MaLR 1 504 -1076 1566 179 7 27 chr5 24543837 24544052 -178541480 + AluJb SINE Alu 1 210 -102 1893 117 4 0 chr5 24544052 24544326 -178541206 - AluY SINE Alu -36 275 1 1566 179 7 27 chr5 24544326 24544407 -178541125 + AluJb SINE Alu 210 291 -21 1432 247 87 30 chr5 24544551 24545021 -178540511 - MLT1D LTR MaLR 0 505 9 2165 182 52 28 chr5 24545198 24545664 -178539868 - L1MC1 LINE L1 -4 6329 5853 239 386 82 22 chr5 24545792 24545976 -178539556 + L2 LINE L2 1169 1363 -1951 196 330 88 11 chr5 24546126 24546217 -178539315 + L2 LINE L2 1609 1706 -1608 565 349 64 35 chr5 24546357 24546870 -178538662 + L2 LINE L2 1928 2455 -859 213 304 111 22 chr5 24546869 24547004 -178538528 - MIR SINE MIR -24 238 92 * 257 329 84 17 chr5 24547061 24547298 -178538234 - MARNA DNA Mariner -31 555 303 838 188 12 24 chr5 24547351 24547541 -178537991 + AluJo SINE Alu 120 307 0 206 349 81 15 chr5 24548227 24548425 -178537107 - MIR SINE MIR 0 262 52 22 0 0 0 chr5 24548800 24548822 -178536710 + AT_rich Low_complexity Low_complexity 1 22 0 223 333 40 0 chr5 24549437 24549512 -178536020 + L2 LINE L2 3224 3301 -12 24 0 0 0 chr5 24549634 24549658 -178535874 + AT_rich Low_complexity Low_complexity 1 24 0 1560 240 57 14 chr5 24549716 24550153 -178535379 - MER31B LTR ERV1 -10 456 1 21 36 0 0 chr5 24550512 24550540 -178534992 + AT_rich Low_complexity Low_complexity 1 28 0 293 311 27 40 chr5 24551597 24551745 -178533787 + L1MC5 LINE L1 7720 7865 -96 23 54 0 0 chr5 24551783 24551820 -178533712 + AT_rich Low_complexity Low_complexity 1 37 0 641 194 8 0 chr5 24551828 24551957 -178533575 - MER39B LTR ERV1 -382 271 142 3738 189 20 33 chr5 24551958 24552833 -178532699 - L1MA4 LINE L1 -225 7494 6623 3179 224 40 4 chr5 24552830 24553661 -178531871 - L1MA4 LINE L1 -2481 5084 4224 * 334 127 16 16 chr5 24553659 24553722 -178531810 - L1MA4 LINE L1 -4185 3380 3318 * 277 130 19 0 chr5 24553724 24553778 -178531754 + L1M1 LINE L1 3303 3357 -4208 6878 245 56 83 chr5 24553803 24554453 -178531079 - L1MA4 LINE L1 -4272 3293 2627 2858 6 0 3 chr5 24554453 24554772 -178530760 - AluYb8 SINE Alu 0 318 1 6878 245 56 83 chr5 24554772 24557042 -178528490 - L1MA4 LINE L1 -4938 2627 13 199 243 40 40 chr5 24557132 24557206 -178528326 + L2 LINE L2 3178 3251 -21 27 29 0 0 chr5 24557207 24557241 -178528291 + AT_rich Low_complexity Low_complexity 1 34 0 605 295 90 33 chr5 24557458 24557790 -178527742 - L2 LINE L2 -103 3210 2860 989 181 67 122 chr5 24558243 24558603 -178526929 + MER2 DNA MER2_type 4 343 -1 1694 243 99 11 chr5 24558881 24559355 -178526177 + L1ME1 LINE L1 5559 6074 -92 28 48 0 0 chr5 24559980 24560022 -178525510 + AT_rich Low_complexity Low_complexity 1 42 0 1681 262 30 19 chr5 24560516 24560981 -178524551 + MER70A LTR ERVL 1 470 -2 849 87 0 0 chr5 24561575 24561690 -178523842 - L1MA3 LINE L1 -11 6294 6180 255 31 0 0 chr5 24561867 24561899 -178523633 + (TGG)n Simple_repeat Simple_repeat 2 33 0 499 328 81 39 chr5 24561988 24562345 -178523187 - LTR16C LTR ERVL -56 435 64 1185 255 57 20 chr5 24562362 24562711 -178522821 - MLT1A2 LTR MaLR -2 372 11 343 289 18 18 chr5 24562767 24562881 -178522651 - MIR SINE MIR -76 186 73 1202 215 54 4 chr5 24563324 24563584 -178521948 + L1M1 LINE L1 15 287 -7278 437 202 0 0 chr5 24563577 24563666 -178521866 + L1M1 LINE L1 768 856 -6709 * 1663 143 24 57 chr5 24563671 24564007 -178521525 - THE1B LTR MaLR -35 329 5 7215 118 25 7 chr5 24564009 24565071 -178520461 - THE1B-int LTR MaLR 0 1580 499 5550 64 5 0 chr5 24565177 24566176 -178519356 + L1P2 LINE L1 4646 5649 -505 1574 161 0 0 chr5 24566316 24566559 -178518973 - AluSq SINE Alu -70 243 1 367 316 128 26 chr5 24566598 24566949 -178518583 - L1M4 LINE L1 -3613 2533 2147 200 108 0 27 chr5 24567042 24567079 -178518453 + (GA)n Simple_repeat Simple_repeat 1 36 0 29 28 0 0 chr5 24567295 24567331 -178518201 + AT_rich Low_complexity Low_complexity 1 36 0 2041 96 0 0 chr5 24567333 24567614 -178517918 - L1PA14 LINE L1 -14 6147 5867 1810 164 0 3 chr5 24567786 24568078 -178517454 - AluJb SINE Alu -15 297 7 246 313 90 22 chr5 24568740 24568874 -178516658 + MIR SINE MIR 64 206 -56 264 143 43 0 chr5 24569750 24569820 -178515712 + (TA)n Simple_repeat Simple_repeat 1 73 0 222 91 0 0 chr5 24569821 24569854 -178515678 + (TG)n Simple_repeat Simple_repeat 2 34 0 1485 276 103 43 chr5 24570187 24570931 -178514601 + LTR50 LTR ERVL 1 789 -6 1988 95 0 0 chr5 24571337 24571599 -178513933 + AluSc SINE Alu 31 292 -17 522 258 66 20 chr5 24573424 24573622 -178511910 + MER3 DNA MER1_type 3 209 0 1319 224 31 14 chr5 24573730 24574016 -178511516 - AluJb SINE Alu -9 303 13 346 94 31 0 chr5 24574143 24574207 -178511325 + GA-rich Low_complexity Low_complexity 3 68 0 873 214 143 43 chr5 24574378 24574691 -178510841 + MLT1A2 LTR MaLR 27 467 0 23 0 0 0 chr5 24575938 24575961 -178509571 + AT_rich Low_complexity Low_complexity 1 23 0 2035 111 14 7 chr5 24576429 24576717 -178508815 + AluSx SINE Alu 3 292 -20 243 61 0 0 chr5 24577033 24577066 -178508466 + (TG)n Simple_repeat Simple_repeat 2 34 0 326 338 90 23 chr5 24578395 24578661 -178506871 + HAL1 LINE L1 1368 1651 -856 1091 197 90 79 chr5 24578858 24579214 -178506318 - MLT1A1 LTR MaLR -5 360 1 7561 138 49 34 chr5 24579265 24580574 -178504958 - THE1-int LTR MaLR -85 1495 168 3948 188 79 22 chr5 24580577 24581577 -178503955 - MLT1A1-int LTR MaLR -295 1356 180 694 184 8 0 chr5 24581578 24581703 -178503829 + THE1C LTR MaLR 250 375 0 21 82 0 0 chr5 24582669 24582718 -178502814 + AT_rich Low_complexity Low_complexity 1 49 0 1631 240 32 38 chr5 24583168 24583699 -178501833 - L1MA9 LINE L1 -38 6274 5746 720 200 73 0 chr5 24583807 24583972 -178501560 - L1MA9 LINE L1 -541 5771 5595 230 0 33 0 chr5 24583972 24584002 -178501530 + (TTA)n Simple_repeat Simple_repeat 3 33 0 304 133 0 0 chr5 24584002 24584047 -178501485 - L1PA4 LINE L1 -18 6137 6093 672 13 0 0 chr5 24584047 24584125 -178501407 + L1P2 LINE L1 5706 5783 -372 373 210 0 12 chr5 24584117 24584198 -178501334 - L1MA9 LINE L1 -693 5619 5540 * 1214 209 11 0 chr5 24584205 24584483 -178501049 + L1 LINE L1 3398 3678 -2468 23 0 0 0 chr5 24584491 24584514 -178501018 + AT_rich Low_complexity Low_complexity 1 23 0 1767 271 128 12 chr5 24585762 24586553 -178498979 + L1MDa LINE L1 499 1527 -5013 2056 89 3 71 chr5 24587391 24587727 -178497805 + AluSp SINE Alu 1 313 0 21 0 0 0 chr5 24588142 24588163 -178497369 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr5 24588791 24588814 -178496718 + AT_rich Low_complexity Low_complexity 1 23 0 722 265 89 22 chr5 24789745 24790115 -178295417 + LTR37B LTR ERV1 1 395 -73 1360 346 114 11 chr5 24790243 24791242 -178294290 - L2 LINE L2 -393 2921 1820 1590 202 39 30 chr5 24791977 24792338 -178293194 + MLT1A1 LTR MaLR 2 365 0 32 0 0 0 chr5 24792736 24792768 -178292764 + AT_rich Low_complexity Low_complexity 1 32 0 279 308 42 25 chr5 24792775 24792895 -178292637 + L1MC4 LINE L1 7557 7678 -364 233 260 0 0 chr5 24792920 24792970 -178292562 + GA-rich Low_complexity Low_complexity 1 50 0 933 169 18 0 chr5 24794772 24794938 -178290594 - MLT1A1 LTR MaLR 0 365 197 2006 229 26 9 chr5 24794943 24795362 -178290170 - MLT2B3 LTR ERVL -128 426 1 281 241 35 46 chr5 24795673 24795760 -178289772 - MER5A DNA MER1_type -2 187 102 2057 138 3 0 chr5 24796156 24796446 -178289086 + AluSx SINE Alu 1 291 -21 495 276 181 26 chr5 24796927 24797159 -178288373 - LTR33 LTR ERVL -250 271 4 3847 15 0 18 chr5 24797269 24797768 -178287764 - L1PA2 LINE L1 0 6155 5706 300 281 35 53 chr5 24797769 24797883 -178287649 + MIR SINE MIR 151 262 0 224 220 9 37 chr5 24798511 24798620 -178286912 + (TTAA)n Simple_repeat Simple_repeat 4 109 0 891 202 6 0 chr5 24799991 24800159 -178285373 + AluJb SINE Alu 136 304 -8 362 340 123 8 chr5 24801964 24802199 -178283333 + MLT1I LTR MaLR 1 262 -147 711 283 61 36 chr5 24802586 24803030 -178282502 - L1M4 LINE L1 -1313 4833 4373 60 27 0 0 chr5 24803030 24803104 -178282428 + AT_rich Low_complexity Low_complexity 1 74 0 1592 199 10 20 chr5 24803282 24803588 -178281944 + AluJb SINE Alu 1 303 -9 295 373 0 0 chr5 24803671 24803789 -178281743 - HERV16 LTR ERVL -2389 3096 2979 414 257 38 9 chr5 24803863 24803968 -178281564 - HERV16 LTR ERVL -3670 1326 1219 540 278 66 26 chr5 24803997 24804224 -178281308 - HERV16 LTR ERVL -3830 1166 931 917 91 68 0 chr5 24804234 24804366 -178281166 + MSTA LTR MaLR 1 141 -287 3454 196 34 17 chr5 24804377 24805478 -178280054 - L1M2 LINE L1 -645 5667 4549 7653 128 17 0 chr5 24805510 24806643 -178278889 - THE1B-int LTR MaLR -428 1152 1 1876 178 40 9 chr5 24806645 24806994 -178278538 - THE1B LTR MaLR -2 362 3 3094 206 16 6 chr5 24806996 24807684 -178277848 - L1M4 LINE L1 -1802 4344 3650 198 103 0 0 chr5 24808313 24808342 -178277190 + (TC)n Simple_repeat Simple_repeat 2 30 0 6012 150 39 34 chr5 24808342 24808856 -178276676 - Tigger3b DNA MER2_type -1798 1230 720 1907 142 3 3 chr5 24808856 24809151 -178276381 - AluSx SINE Alu -17 295 1 6012 150 39 34 chr5 24809151 24809455 -178276077 - Tigger3b DNA MER2_type -2308 720 419 2218 66 0 21 chr5 24809455 24809770 -178275762 + AluY SINE Alu 1 309 0 6012 150 39 34 chr5 24809770 24810170 -178275362 - Tigger3b DNA MER2_type -2609 419 3 305 280 118 40 chr5 24810441 24811227 -178274305 - L1MC5 LINE L1 -492 7470 6780 289 270 14 0 chr5 24811253 24811327 -178274205 - L1MC4a LINE L1 -1092 6716 6642 32 43 0 0 chr5 24811630 24811676 -178273856 + AT_rich Low_complexity Low_complexity 1 46 0 1784 185 48 43 chr5 24811733 24812294 -178273238 - MLT2A2 LTR ERVL 0 554 1 1982 129 7 0 chr5 24812410 24812704 -178272828 + AluSq SINE Alu 1 296 -17 34 79 0 0 chr5 24813684 24813760 -178271772 + AT_rich Low_complexity Low_complexity 1 76 0 774 32 0 0 chr5 24813976 24814069 -178271463 + (TA)n Simple_repeat Simple_repeat 1 93 0 4530 182 43 24 chr5 24814940 24816735 -178268797 - L1MA6 LINE L1 -180 7539 5704 4460 223 45 17 chr5 24816835 24818350 -178267182 - L1MA6 LINE L1 -2719 4846 3281 576 198 0 86 chr5 24818379 24818512 -178267020 + MER4E LTR ERV1 1 222 -650 2097 122 0 0 chr5 24818512 24818806 -178266726 - AluSg SINE Alu -16 294 1 576 198 0 86 chr5 24818806 24818865 -178266667 + MER4E LTR ERV1 222 284 -588 * 1477 207 41 32 chr5 24818862 24819205 -178266327 + MER4D LTR ERV1 546 891 -12 342 264 125 7 chr5 24819265 24819409 -178266123 - L1MA6 LINE L1 -4357 3208 3048 2837 191 62 7 chr5 24819410 24819976 -178265556 + Tigger1 DNA MER2_type 1 597 -1821 21 0 0 0 chr5 24820565 24820586 -178264946 + AT_rich Low_complexity Low_complexity 1 21 0 2264 239 42 16 chr5 24821594 24822142 -178263390 + REP3 LTR ERV 1 562 0 1465 198 13 48 chr5 24822325 24822777 -178262755 - MLT1D LTR MaLR 0 505 1 660 271 48 33 chr5 24824293 24824503 -178261029 + MER58A DNA MER1_type 2 214 -10 423 248 9 0 chr5 24824754 24824867 -178260665 + LTR43 LTR ERV1 180 293 -309 1974 116 4 0 chr5 24824931 24825206 -178260326 - AluSx SINE Alu -3 309 34 356 145 0 92 chr5 24825239 24825315 -178260217 + Charlie3 DNA MER1_type 1 69 -2641 1988 141 7 0 chr5 24826307 24826606 -178258926 + AluSq SINE Alu 6 306 -7 933 236 148 107 chr5 24827979 24828567 -178256965 - MLT1E1 LTR MaLR -37 617 6 290 339 39 15 chr5 24828622 24828752 -178256780 + MIR3 SINE MIR 44 176 -32 324 49 0 0 chr5 24828820 24828861 -178256671 - MADE1 DNA Mariner 0 80 40 1084 319 163 6 chr5 24829493 24830210 -178255322 + L2 LINE L2 1572 2401 -913 284 358 52 36 chr5 24831087 24831394 -178254138 - HERVL LTR ERVL -2297 3357 3046 544 353 33 3 chr5 24831565 24831871 -178253661 - HERVL LTR ERVL -2901 2863 2549 1475 189 47 153 chr5 24832086 24832719 -178252813 + L1MA9 LINE L1 5652 6351 39 1820 196 130 9 chr5 24832719 24833173 -178252359 - LTR22 LTR ERVK 0 509 1 1475 189 47 153 chr5 24833173 24833191 -178252341 + L1MA9 LINE L1 6351 6369 57 180 0 0 0 chr5 24833191 24833211 -178252321 + (TG)n Simple_repeat Simple_repeat 2 21 0 309 68 0 0 chr5 24833217 24833261 -178252271 + (TA)n Simple_repeat Simple_repeat 2 45 0 1475 189 47 153 chr5 24833261 24833298 -178252234 + L1MA9 LINE L1 6235 6274 -38 485 345 66 16 chr5 24833377 24833797 -178251735 - HERVL LTR ERVL -2818 2178 1776 408 327 50 13 chr5 24834932 24835091 -178250441 + MIR SINE MIR 56 220 -42 2189 91 3 7 chr5 24836964 24837260 -178248272 - AluSq SINE Alu -10 303 9 22 0 0 0 chr5 24837480 24837502 -178248030 + AT_rich Low_complexity Low_complexity 1 22 0 1634 256 37 37 chr5 24838157 24838645 -178246887 - LTR40a LTR ERVL -9 510 23 183 391 62 0 chr5 24839246 24839374 -178246158 + L2 LINE L2 1683 1818 -1496 332 333 58 104 chr5 24839467 24839881 -178245651 + L2 LINE L2 2066 2460 -854 2342 82 20 0 chr5 24840247 24840552 -178244980 - AluSx SINE Alu -1 311 1 242 286 13 13 chr5 24840813 24840890 -178244642 + L1M4 LINE L1 4071 4147 -1999 276 171 49 12 chr5 24841091 24841173 -178244359 + (TA)n Simple_repeat Simple_repeat 2 86 0 31 44 0 0 chr5 24842060 24842105 -178243427 + AT_rich Low_complexity Low_complexity 1 45 0 368 254 42 17 chr5 24843031 24843149 -178242383 + MIR SINE MIR 113 233 -29 25 65 0 0 chr5 24844474 24844520 -178241012 + AT_rich Low_complexity Low_complexity 1 46 0 234 105 0 0 chr5 24845047 24845085 -178240447 + (TG)n Simple_repeat Simple_repeat 1 38 0 250 307 22 66 chr5 24845117 24845254 -178240278 + MLT1J LTR MaLR 191 321 -190 194 366 0 21 chr5 24847025 24847118 -178238414 + MIR3 SINE MIR 76 166 -42 25 65 0 0 chr5 24847588 24847634 -178237898 + AT_rich Low_complexity Low_complexity 1 46 0 22 56 0 0 chr5 24847728 24847764 -178237768 + AT_rich Low_complexity Low_complexity 1 36 0 719 197 8 0 chr5 24847948 24848075 -178237457 + FLAM_A SINE Alu 1 128 -5 224 182 0 18 chr5 24848300 24848355 -178237177 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 21 36 0 0 chr5 24848449 24848477 -178237055 + AT_rich Low_complexity Low_complexity 1 28 0 513 236 174 17 chr5 24848677 24848855 -178236677 + MER58A DNA MER1_type 4 209 -15 330 304 106 28 chr5 24848877 24849235 -178236297 - HAL1 LINE L1 -1364 1143 758 206 219 41 0 chr5 24849564 24849637 -178235895 + (TA)n Simple_repeat Simple_repeat 2 77 0 223 157 29 0 chr5 24849650 24849720 -178235812 + (TA)n Simple_repeat Simple_repeat 2 73 0 2272 77 0 35 chr5 24850737 24851049 -178234483 - AluY SINE Alu -10 301 1 2003 128 0 3 chr5 24851260 24851556 -178233976 - AluSx SINE Alu -15 297 3 327 25 0 0 chr5 24851643 24851683 -178233849 + (TG)n Simple_repeat Simple_repeat 2 41 0 1427 212 0 30 chr5 24851759 24852061 -178233471 + AluJb SINE Alu 1 293 -19 559 272 32 6 chr5 24852439 24852597 -178232935 - MLT1D LTR MaLR -2 503 342 4436 112 99 11 chr5 24852597 24853314 -178232218 + LTR17 LTR ERV1 1 780 0 2008 141 84 19 chr5 24853320 24853773 -178231759 - MER1A DNA MER1_type 0 529 6 1344 224 46 40 chr5 24853777 24854103 -178231429 - MLT1D LTR MaLR -157 348 21 414 265 8 17 chr5 24854106 24854223 -178231309 - L1MCc LINE L1 -5535 888 773 609 205 0 8 chr5 24854658 24854775 -178230757 - MER20 DNA MER1_type -11 208 93 1406 254 118 35 chr5 24854781 24854829 -178230703 - MLT1E LTR MaLR -3 590 547 405 0 0 0 chr5 24854829 24854874 -178230658 + (CA)n Simple_repeat Simple_repeat 2 46 0 1406 254 118 35 chr5 24854874 24855181 -178230351 - MLT1E LTR MaLR -46 547 267 1786 174 35 32 chr5 24855181 24855555 -178229977 + THE1C LTR MaLR 1 375 0 8998 147 29 34 chr5 24855555 24857143 -178228389 + THE1C-int LTR MaLR 1 1580 0 2026 160 11 26 chr5 24857143 24857524 -178228008 + THE1C LTR MaLR 1 375 0 1406 254 118 35 chr5 24857524 24857657 -178227875 - MLT1E LTR MaLR -325 268 58 1033 179 25 82 chr5 24857682 24857962 -178227570 + MER21A LTR ERV1 1 264 -667 * 2425 167 125 18 chr5 24857961 24858465 -178227067 + MER21A LTR ERV1 368 925 -6 447 250 11 0 chr5 24858470 24858562 -178226970 - MER20 DNA MER1_type -126 93 1 643 239 92 25 chr5 24858601 24858839 -178226693 - L1MCc LINE L1 -6143 280 27 392 301 148 11 chr5 24859254 24859430 -178226102 - MLT1E LTR MaLR -175 418 219 1199 210 98 61 chr5 24859563 24859757 -178225775 + MLT1B LTR MaLR 1 186 -204 2270 156 49 10 chr5 24859757 24860168 -178225364 + MSTA LTR MaLR 1 427 -1 1199 210 98 61 chr5 24860168 24860349 -178225183 + MLT1B LTR MaLR 186 390 0 2142 129 73 15 chr5 24860407 24860749 -178224783 - THE1B LTR MaLR 0 364 3 28 29 0 0 chr5 24861301 24861336 -178224196 + AT_rich Low_complexity Low_complexity 1 35 0 1850 251 42 21 chr5 24864098 24864628 -178220904 - MER87 LTR ERV1 0 541 1 322 301 12 35 chr5 24865110 24865283 -178220249 - MER57A LTR ERV1 0 403 235 1222 248 18 49 chr5 24865568 24866000 -178219532 - MER57A-int LTR ERV1 -1587 4744 4629 390 219 123 61 chr5 24866007 24866446 -178219086 - MER57A-int LTR ERV1 -2371 3575 1978 251 277 31 0 chr5 24866517 24866582 -178218950 - MER34 LTR ERV1 0 542 476 369 257 38 38 chr5 24866582 24866687 -178218845 - MER34 LTR ERV1 -305 237 133 1813 169 22 33 chr5 24866867 24867235 -178218297 - THE1B LTR MaLR 0 364 1 2340 194 14 22 chr5 24867238 24867727 -178217805 + MER50 LTR ERV1 1 485 -249 1874 158 3 3 chr5 24867727 24868012 -178217520 + AluSx SINE Alu 1 285 -27 225 0 0 0 chr5 24868024 24868049 -178217483 + (TA)n Simple_repeat Simple_repeat 1 25 0 2438 87 0 3 chr5 24868049 24868360 -178217172 - AluSp SINE Alu -3 310 1 1338 157 11 77 chr5 24868394 24868668 -178216864 + MER50 LTR ERV1 479 734 0 360 238 68 46 chr5 24868672 24869111 -178216421 - MER57A-int LTR ERV1 -418 1368 879 225 328 30 30 chr5 24869216 24869350 -178216182 - MER34C LTR ERV1 -158 427 294 306 271 10 31 chr5 24870063 24870159 -178215373 - MER57A-int LTR ERV1 -4560 376 283 1248 197 42 32 chr5 24870211 24870520 -178215012 + AluJo SINE Alu 1 312 0 5116 154 24 27 chr5 24870706 24872355 -178213177 - L1PA13 LINE L1 -2 6161 4519 * 8805 205 21 21 chr5 24872351 24873391 -178212141 + L1P LINE L1 2469 3507 -2639 189 0 0 0 chr5 24873391 24873412 -178212120 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 8805 205 21 21 chr5 24873412 24873477 -178212055 + L1P LINE L1 3507 3570 -2576 1659 139 0 0 chr5 24873477 24873714 -178211818 + AluSq SINE Alu 1 237 -76 8805 205 21 21 chr5 24873714 24874647 -178210885 + L1P LINE L1 3570 4509 -1637 428 282 99 42 chr5 24875486 24875819 -178209713 - MER57A LTR ERV1 -5 429 78 30 45 0 0 chr5 24876457 24876501 -178209031 + AT_rich Low_complexity Low_complexity 1 44 0 1870 162 3 0 chr5 24876590 24876880 -178208652 - AluSx SINE Alu -21 291 1 1249 207 23 4 chr5 24877456 24877717 -178207815 - AluJo SINE Alu -34 278 13 429 285 27 35 chr5 24877744 24878000 -178207532 - L1MEd LINE L1 -4894 1225 972 21 0 0 0 chr5 24878909 24878930 -178206602 + AT_rich Low_complexity Low_complexity 1 21 0 794 173 13 0 chr5 24879330 24879480 -178206052 - MER47A DNA MER2_type -190 176 25 1362 117 0 10 chr5 24879758 24879964 -178205568 - L1PB1 LINE L1 -1 6150 5947 23 0 0 0 chr5 24880352 24880375 -178205157 + AT_rich Low_complexity Low_complexity 1 23 0 258 275 99 11 chr5 24880909 24881000 -178204532 - L2 LINE L2 -2 3270 3172 6382 191 8 6 chr5 24981860 24983152 -178102380 + L1P LINE L1 3274 4568 -1578 29 47 0 0 chr5 24983420 24983463 -178102069 + AT_rich Low_complexity Low_complexity 1 43 0 5762 119 13 11 chr5 24983543 24984829 -178100703 - L1PA13 LINE L1 -2 6161 4870 954 226 51 30 chr5 24984929 24985164 -178100368 + MLT1B LTR MaLR 151 390 0 6323 199 23 46 chr5 24985698 24986831 -178098701 - L1 LINE L1 -909 5237 4104 317 89 0 0 chr5 24986831 24986876 -178098656 - MADE1 DNA Mariner -35 45 1 6323 199 23 46 chr5 24986876 24987289 -178098243 - L1 LINE L1 -2042 4104 3683 1057 130 19 0 chr5 24987289 24987451 -178098081 - AluSg/x SINE Alu -2 310 146 23 0 0 0 chr5 24989576 24989599 -178095933 + AT_rich Low_complexity Low_complexity 1 23 0 360 152 0 0 chr5 24990495 24990561 -178094971 + (TA)n Simple_repeat Simple_repeat 2 67 0 3956 171 30 52 chr5 24990817 24991697 -178093835 - L1MB3 LINE L1 -2 6181 5322 1797 131 7 18 chr5 24993296 24993579 -178091953 + AluSx SINE Alu 4 321 0 343 0 0 0 chr5 24993579 24993617 -178091915 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 790 219 122 15 chr5 24993957 24994183 -178091349 + AluJo SINE Alu 66 312 0 1764 152 18 11 chr5 24994259 24994571 -178090961 - AluSx SINE Alu 0 314 1 408 336 92 37 chr5 24994613 24994940 -178090592 - L1ME LINE L1 -327 5794 5450 9245 186 62 12 chr5 24995853 24996382 -178089150 - L1P LINE L1 -1020 5126 4625 3559 71 2 0 chr5 24996382 24996834 -178088698 - MLT2A2 LTR ERVL 0 453 1 9245 186 62 12 chr5 24996834 24998103 -178087429 - L1P LINE L1 -1521 4625 3218 2097 100 0 7 chr5 24998103 24998412 -178087120 - AluSc SINE Alu 0 307 1 9245 186 62 12 chr5 24998412 24998583 -178086949 - L1P LINE L1 -2928 3218 3057 3997 191 8 0 chr5 24998600 24999360 -178086172 + L1P LINE L1 1924 2689 -3457 1397 246 66 0 chr5 25001389 25001738 -178083794 + MER67D LTR ERV1 5 376 -138 1756 159 55 0 chr5 25001896 25002185 -178083347 - AluSg SINE Alu -3 307 3 26 0 0 0 chr5 25002195 25002221 -178083311 + AT_rich Low_complexity Low_complexity 1 26 0 2953 96 41 2 chr5 25002570 25003006 -178082526 - MLT2A2 LTR ERVL 0 453 1 26 82 0 0 chr5 25003093 25003154 -178082378 + AT_rich Low_complexity Low_complexity 1 61 0 619 298 64 34 chr5 25003717 25004012 -178081520 - LTR16C LTR ERVL 0 491 188 17092 115 42 23 chr5 25004135 25006789 -178078743 + Charlie3 DNA MER1_type 1 2706 -4 1512 236 20 9 chr5 25008185 25008529 -178077003 + MLT2C1 LTR ERVL 2 349 -48 290 87 22 0 chr5 25008534 25008580 -178076952 + (TC)n Simple_repeat Simple_repeat 1 47 0 252 220 0 0 chr5 25008592 25008651 -178076881 + MLT2C1 LTR ERVL 462 520 0 237 288 59 20 chr5 25008818 25008971 -178076561 + L1M2c LINE L1 1822 1980 -4809 304 244 31 75 chr5 25008993 25009153 -178076379 + L1MEc LINE L1 1178 1330 -5066 24 32 0 0 chr5 25009278 25009309 -178076223 + AT_rich Low_complexity Low_complexity 1 31 0 27 49 0 0 chr5 25009421 25009462 -178076070 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr5 25010030 25010059 -178075473 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr5 25010509 25010530 -178075002 + (A)n Simple_repeat Simple_repeat 1 21 0 263 356 25 0 chr5 25010846 25010964 -178074568 - L2 LINE L2 -852 2462 2342 398 237 58 64 chr5 25011128 25011301 -178074231 + MLT1H LTR MaLR 3 174 -375 244 302 107 65 chr5 25012599 25012814 -178072718 - LTR16A LTR ERVL -202 248 25 265 277 66 36 chr5 25012874 25013011 -178072521 + MLT1H LTR MaLR 3 143 -406 2314 68 0 7 chr5 25013062 25013354 -178072178 + AluY SINE Alu 3 292 -19 232 188 94 16 chr5 25013536 25013600 -178071932 + MLT1H LTR MaLR 481 549 0 25 0 0 0 chr5 25013638 25013663 -178071869 + AT_rich Low_complexity Low_complexity 1 25 0 243 156 13 52 chr5 25014200 25014277 -178071255 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 225 146 0 0 chr5 25014298 25014339 -178071193 - LTR66 LTR ERVL -172 438 398 230 242 22 22 chr5 25014343 25014434 -178071098 + L1MC4 LINE L1 6614 6704 -1338 540 130 16 49 chr5 25014451 25014636 -178070896 + (TA)n Simple_repeat Simple_repeat 2 180 0 216 196 11 22 chr5 25014651 25014743 -178070789 + (TA)n Simple_repeat Simple_repeat 2 92 0 27 49 0 0 chr5 25015625 25015666 -178069866 + AT_rich Low_complexity Low_complexity 1 41 0 2850 6 0 0 chr5 25016803 25017115 -178068417 - AluYb8 SINE Alu -6 312 1 22 70 0 0 chr5 25017142 25017185 -178068347 + AT_rich Low_complexity Low_complexity 1 43 0 24 77 0 0 chr5 25018264 25018316 -178067216 + AT_rich Low_complexity Low_complexity 1 52 0 208 286 22 11 chr5 25018504 25018595 -178066937 + (TA)n Simple_repeat Simple_repeat 1 92 0 26 69 0 35 chr5 25019056 25019143 -178066389 + AT_rich Low_complexity Low_complexity 1 84 0 291 157 0 0 chr5 25019984 25020035 -178065497 + A-rich Low_complexity Low_complexity 1 51 0 216 97 0 0 chr5 25020052 25020083 -178065449 + (TG)n Simple_repeat Simple_repeat 2 32 0 3024 230 22 18 chr5 25020083 25020758 -178064774 - ERVL LTR ERVL -3852 1912 1235 183 80 0 0 chr5 25020758 25020783 -178064749 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 434 62 0 0 chr5 25020785 25020849 -178064683 - Alu SINE Alu -2 310 247 2229 211 17 6 chr5 25020894 25021363 -178064169 + ERVL LTR ERVL 766 1239 -4525 1962 70 12 8 chr5 25021371 25021628 -178063904 + AluSq SINE Alu 1 258 -55 1396 193 23 36 chr5 25021628 25021925 -178063607 + MER61A LTR ERV1 49 343 0 471 72 0 0 chr5 25021981 25022050 -178063482 - AluS SINE Alu -244 69 1 27 0 0 0 chr5 25022758 25022785 -178062747 + AT_rich Low_complexity Low_complexity 1 27 0 1318 187 142 89 chr5 25023821 25024238 -178061294 - Tigger2 DNA MER2_type 0 2718 2280 341 229 0 0 chr5 25024243 25024304 -178061228 + MER8 DNA MER2_type 179 239 0 227 39 96 0 chr5 25024864 25024916 -178060616 + (CCTAA)n Simple_repeat Simple_repeat 4 60 0 288 248 26 17 chr5 25025760 25025877 -178059655 + (TA)n Simple_repeat Simple_repeat 1 118 0 1238 213 109 30 chr5 25026754 25027092 -178058440 - MLT1A1 LTR MaLR 0 365 1 335 143 31 10 chr5 25027282 25027380 -178058152 + (TA)n Simple_repeat Simple_repeat 1 100 0 183 387 16 0 chr5 25027846 25027908 -178057624 + L2 LINE L2 2207 2269 -1045 21 0 0 0 chr5 25027969 25027990 -178057542 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr5 25028079 25028100 -178057432 + AT_rich Low_complexity Low_complexity 1 21 0 703 230 52 17 chr5 25030996 25031170 -178054362 - MER20 DNA MER1_type -38 181 2 481 138 23 0 chr5 25031757 25031844 -178053688 - L1PA13 LINE L1 0 6163 6075 208 231 22 66 chr5 25032035 25032126 -178053406 - MIR SINE MIR -54 208 122 713 288 5 26 chr5 25033022 25033213 -178052319 - Tigger3(Golem) DNA MER2_type -2842 187 1 22 0 0 0 chr5 25033439 25033461 -178052071 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr5 25034641 25034662 -178050870 + AT_rich Low_complexity Low_complexity 1 21 0 683 147 202 23 chr5 25034685 25034814 -178050718 - AluSg/x SINE Alu -24 286 135 388 93 27 0 chr5 25034814 25034889 -178050643 + (TA)n Simple_repeat Simple_repeat 1 77 0 1924 123 5 115 chr5 25035919 25036293 -178049239 - MER1B DNA MER1_type -4 335 3 1963 74 0 0 chr5 25036650 25036929 -178048603 - AluY SINE Alu 0 317 39 1710 172 40 0 chr5 25037278 25037575 -178047957 - AluJb SINE Alu -3 309 1 41 21 0 0 chr5 25037636 25037684 -178047848 + AT_rich Low_complexity Low_complexity 1 48 0 3143 196 57 40 chr5 25037688 25037770 -178047762 + L1MB1 LINE L1 5209 5288 -880 185 35 69 0 chr5 25037770 25037799 -178047733 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3143 196 57 40 chr5 25037799 25038542 -178046990 + L1MB1 LINE L1 5288 6029 -139 2382 140 12 22 chr5 25038556 25038969 -178046563 - L1P4 LINE L1 -443 5723 5315 6820 50 42 0 chr5 25038972 25039931 -178045601 - L1PA5 LINE L1 -8 6146 5183 511 271 24 24 chr5 25039956 25039989 -178045543 + L1MA10 LINE L1 6124 6156 -178 243 61 0 0 chr5 25039989 25040022 -178045510 + (CA)n Simple_repeat Simple_repeat 2 34 0 511 271 24 24 chr5 25040022 25040158 -178045374 + L1MA10 LINE L1 6155 6293 -41 275 302 28 0 chr5 25043649 25043755 -178041777 + HsTC2 DNA Tc2 4 112 -1786 257 330 66 0 chr5 25044159 25044265 -178041267 + ERVL LTR ERVL 1341 1453 -4311 2217 122 9 3 chr5 25044426 25044762 -178040770 + L1PA13 LINE L1 5612 5949 -214 2138 150 22 19 chr5 25044762 25045123 -178040409 - THE1B LTR MaLR 0 364 3 8543 112 4 2 chr5 25045125 25046311 -178039221 - THE1B-int LTR MaLR 0 1580 393 580 129 10 0 chr5 25046311 25046412 -178039120 + L1PA13 LINE L1 6062 6163 0 22 35 0 0 chr5 25046412 25046441 -178039091 + AT_rich Low_complexity Low_complexity 1 29 0 31 44 0 0 chr5 25046746 25046791 -178038741 + AT_rich Low_complexity Low_complexity 1 45 0 22 56 0 0 chr5 25047814 25047850 -178037682 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr5 25048117 25048141 -178037391 + AT_rich Low_complexity Low_complexity 1 24 0 578 326 126 26 chr5 25049390 25049740 -178035792 + L2 LINE L2 1455 1839 -1475 270 352 30 30 chr5 25049773 25050009 -178035523 + L2 LINE L2 3074 3309 -4 879 319 81 23 chr5 25050633 25051065 -178034467 + LTR16B LTR ERVL 8 464 0 965 320 38 12 chr5 25051377 25051796 -178033736 + ERVL LTR ERVL 839 1268 -3728 24 0 0 0 chr5 25053118 25053142 -178032390 + AT_rich Low_complexity Low_complexity 1 24 0 507 303 17 27 chr5 25053262 25053559 -178031973 - L1ME LINE L1 -552 5610 5317 7775 18 0 5 chr5 25053564 25055086 -178030446 - L1PA3 LINE L1 -4 6151 4634 305 253 160 38 chr5 25055238 25055475 -178030057 + L1ME LINE L1 4807 5072 -1074 5191 214 48 6 chr5 25055565 25056872 -178028660 + L1 LINE L1 2300 3661 -2485 1515 209 29 3 chr5 25056874 25057181 -178028351 + L1PB4 LINE L1 5825 6139 -17 497 158 73 0 chr5 25057281 25057363 -178028169 - AluS SINE Alu -225 88 1 14442 211 33 11 chr5 25057364 25057740 -178027792 - L1P LINE L1 -751 5395 5029 2124 100 4 0 chr5 25057740 25058040 -178027492 - AluY SINE Alu 0 301 1 14442 211 33 11 chr5 25058040 25059357 -178026175 - L1P LINE L1 -1117 5029 3742 255 79 0 0 chr5 25059357 25059395 -178026137 + (TG)n Simple_repeat Simple_repeat 2 39 0 14442 211 33 11 chr5 25059395 25061059 -178024473 - L1P LINE L1 -2404 3742 1963 1751 167 27 13 chr5 25061057 25061780 -178023752 - L1PA13 LINE L1 -4892 1895 1 * 22 0 0 0 chr5 25062122 25062144 -178023388 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr5 25062201 25062222 -178023310 + AT_rich Low_complexity Low_complexity 1 21 0 228 133 89 0 chr5 25064326 25064371 -178021161 - L2 LINE L2 0 3313 3265 25 0 0 0 chr5 25064383 25064408 -178021124 + AT_rich Low_complexity Low_complexity 1 25 0 276 270 144 0 chr5 25064599 25064710 -178020822 + L1ME LINE L1 5562 5688 -433 192 40 0 0 chr5 25065862 25065887 -178019645 + (CA)n Simple_repeat Simple_repeat 2 26 0 213 222 0 0 chr5 25065887 25065950 -178019582 + (TATG)n Simple_repeat Simple_repeat 2 64 0 313 92 0 46 chr5 25066084 25066101 -178019431 + (TAAAAA)n Simple_repeat Simple_repeat 3 19 -45 6140 10 0 0 chr5 25066101 25066794 -178018738 + L1PA3 LINE L1 5463 6155 0 313 92 0 46 chr5 25066794 25066841 -178018691 + (TAAAAA)n Simple_repeat Simple_repeat 19 64 0 1516 123 58 0 chr5 25067055 25067316 -178018216 + L1MA5A LINE L1 6018 6293 -4 483 325 90 62 chr5 25067481 25068014 -178017518 - ERVL LTR ERVL -4311 1453 906 258 185 0 31 chr5 25068837 25068902 -178016630 + (TTTA)n Simple_repeat Simple_repeat 1 63 0 184 197 13 13 chr5 25069274 25069350 -178016182 + (TA)n Simple_repeat Simple_repeat 2 77 0 22 0 0 0 chr5 25069675 25069697 -178015835 + AT_rich Low_complexity Low_complexity 1 22 0 31 58 0 0 chr5 25069865 25069917 -178015615 + AT_rich Low_complexity Low_complexity 1 52 0 229 122 68 0 chr5 25070176 25070250 -178015282 + (TATAA)n Simple_repeat Simple_repeat 1 79 0 346 189 73 12 chr5 25070266 25070430 -178015102 + (TA)n Simple_repeat Simple_repeat 1 174 0 * 352 228 5 54 chr5 25070361 25070545 -178014987 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 469 155 32 75 chr5 25070462 25070719 -178014813 + (CTATA)n Simple_repeat Simple_repeat 1 246 0 2428 197 22 15 chr5 25070723 25071261 -178014271 + L1MC3 LINE L1 7237 7778 -7 5922 127 88 67 chr5 25073460 25075429 -178010103 + pTR5 LTR ERV1 741 2438 0 4777 162 23 13 chr5 25075746 25076161 -178009371 + L1MA8 LINE L1 5363 5772 -519 2181 112 0 0 chr5 25076161 25076445 -178009087 + AluSx SINE Alu 1 287 -25 369 0 0 0 chr5 25076445 25076486 -178009046 + (CATA)n Simple_repeat Simple_repeat 2 42 0 2181 112 0 0 chr5 25076486 25076497 -178009035 + AluSx SINE Alu 286 296 -16 4777 162 23 13 chr5 25076497 25076996 -178008536 + L1MA8 LINE L1 5772 6286 -5 180 0 0 0 chr5 25077090 25077110 -178008422 + (TC)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr5 25077327 25077348 -178008184 + AT_rich Low_complexity Low_complexity 1 21 0 1430 147 52 34 chr5 25078213 25078549 -178006983 - Tigger3(Golem) DNA MER2_type -47 2982 1 805 212 61 39 chr5 25078976 25079024 -178006508 + MER46A DNA MER2_type 1 46 -2685 2371 77 0 3 chr5 25079024 25079324 -178006208 - AluY SINE Alu -12 299 1 805 212 61 39 chr5 25079324 25079506 -178006026 + MER46A DNA MER2_type 46 236 0 290 186 12 31 chr5 25079534 25079695 -178005837 + (TA)n Simple_repeat Simple_repeat 2 159 0 212 260 13 0 chr5 25079706 25079783 -178005749 + (TA)n Simple_repeat Simple_repeat 2 79 0 198 0 0 0 chr5 25080435 25080457 -178005075 + (CA)n Simple_repeat Simple_repeat 2 23 0 1920 217 20 80 chr5 25080458 25081047 -178004485 - MLT2B3 LTR ERVL 0 554 1 372 264 95 7 chr5 25081247 25081395 -178004137 + MER90 LTR ERV1 132 292 -283 1052 193 18 14 chr5 25082312 25082530 -178003002 + AluJo SINE Alu 89 307 -5 14541 126 34 33 chr5 25083042 25085635 -177999897 - MER109 Unknown Unknown 0 2432 100 23 33 0 0 chr5 25087081 25087111 -177998421 + AT_rich Low_complexity Low_complexity 1 30 0 4017 213 59 15 chr5 25087121 25088548 -177996984 - L1MA9 LINE L1 -29 6283 4792 3478 205 47 56 chr5 25088547 25088914 -177996618 + L1MB1 LINE L1 3000 3369 -2777 * 1780 119 119 39 chr5 25088914 25089251 -177996281 - THE1B LTR MaLR 0 364 1 3478 205 47 56 chr5 25089251 25089914 -177995618 + L1MB1 LINE L1 3369 4020 -2126 2129 172 15 32 chr5 25089915 25090386 -177995146 + L1MB1 LINE L1 5705 6167 -1 22 35 0 0 chr5 25090468 25090497 -177995035 + AT_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr5 25090557 25090612 -177994920 + AT_rich Low_complexity Low_complexity 1 55 0 322 345 110 16 chr5 25090883 25091202 -177994330 - LTR33 LTR ERVL -7 514 166 2244 72 0 0 chr5 25091389 25091665 -177993867 + AluY SINE Alu 34 309 -2 28 29 0 0 chr5 25092221 25092256 -177993276 + AT_rich Low_complexity Low_complexity 1 35 0 6929 160 39 21 chr5 25092269 25093466 -177992066 + L1PA8A LINE L1 4 1282 -5002 198 71 0 0 chr5 25093466 25093494 -177992038 + (CAA)n Simple_repeat Simple_repeat 1 28 0 6929 160 39 21 chr5 25093494 25093769 -177991763 + L1PA8A LINE L1 1282 1550 -4734 6045 218 7 20 chr5 25093873 25095771 -177989761 + L1P3 LINE L1 756 2627 -3834 20148 136 13 16 chr5 25095874 25097647 -177987885 + L1PA8A LINE L1 2206 3984 -2462 2046 103 0 7 chr5 25097647 25097955 -177987577 - AluSg SINE Alu 0 306 1 20148 136 13 16 chr5 25097955 25100424 -177985108 + L1PA8A LINE L1 3984 6418 -28 24 67 0 0 chr5 25101479 25101524 -177984008 + AT_rich Low_complexity Low_complexity 1 45 0 30 59 0 0 chr5 25101586 25101637 -177983895 + AT_rich Low_complexity Low_complexity 1 51 0 2127 130 22 33 chr5 25101817 25102185 -177983347 - THE1B LTR MaLR 0 364 1 1409 251 38 15 chr5 25102573 25103047 -177982485 - Charlie1b DNA MER1_type -34 489 5 492 242 50 28 chr5 25103096 25103278 -177982254 - MER106A DNA MER1_type 0 236 51 1585 232 76 19 chr5 25103672 25104134 -177981398 - L1MD2 LINE L1 -12 6347 5860 2833 101 5 5 chr5 25104794 25105209 -177980323 - L1PA10 LINE L1 -382 5786 5372 2428 104 12 0 chr5 25105211 25105556 -177979976 + L1PA10 LINE L1 5790 6138 -30 197 0 0 67 chr5 25105559 25105589 -177979943 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 41 48 0 0 chr5 25105797 25105859 -177979673 + AT_rich Low_complexity Low_complexity 1 62 0 249 236 0 0 chr5 25105865 25105920 -177979612 - L1MA8 LINE L1 -180 6111 6057 1577 160 33 39 chr5 25106287 25106624 -177978908 - L1MA8 LINE L1 -19 6272 5938 * 4471 182 12 11 chr5 25106613 25107469 -177978063 - L1PA16 LINE L1 -9 6157 5301 250 133 0 0 chr5 25107499 25107544 -177977988 - L1MA8 LINE L1 -4 6287 6243 6254 150 56 18 chr5 25107612 25108797 -177976735 + Tigger3b DNA MER2_type 1 1230 -1 61 90 0 0 chr5 25109150 25109316 -177976216 + AT_rich Low_complexity Low_complexity 1 166 0 1968 125 4 0 chr5 25110219 25110533 -177974999 + AluSx SINE Alu 5 319 0 256 296 44 72 chr5 25110706 25110956 -177974576 + L1MC4a LINE L1 4697 4939 -1207 1304 272 66 55 chr5 25111225 25111864 -177973668 + L1MC4a LINE L1 5265 5910 -1898 655 121 0 10 chr5 25111868 25111967 -177973565 + MER4A LTR ERV1 1 98 -566 1769 130 3 78 chr5 25111967 25112340 -177973192 + MER4A LTR ERV1 261 664 0 2389 93 91 48 chr5 25112343 25112417 -177973115 + MER4A-int LTR ERV1 1 70 -6528 4988 82 28 3 chr5 25112417 25113121 -177972411 - LTR30 LTR ERV1 0 722 1 2389 93 91 48 chr5 25113121 25113464 -177972068 + MER4A-int LTR ERV1 70 436 -6162 479 163 356 0 chr5 25113467 25113602 -177971930 + MER4A-int LTR ERV1 504 686 -5912 234 260 60 30 chr5 25113717 25113817 -177971715 + L2 LINE L2 1693 1795 -1519 808 247 33 2 chr5 25113844 25114049 -177971483 + MER4-int LTR ERV1 1987 2434 -3512 4285 115 25 31 chr5 25114066 25114975 -177970557 + MER4-int LTR ERV1 189 1147 -5611 384 22 0 0 chr5 25114975 25115020 -177970512 + (TG)n Simple_repeat Simple_repeat 2 46 0 3818 105 65 27 chr5 25115025 25115730 -177969802 + MER4-int LTR ERV1 1764 2495 -4103 1308 160 72 0 chr5 25115730 25115967 -177969565 - LTR8 LTR ERV1 -434 257 4 1051 155 42 68 chr5 25115969 25116569 -177968963 + MER4-int LTR ERV1 1861 4148 -2977 1020 169 42 35 chr5 25116585 25116845 -177968687 + MER4-int LTR ERV1 3418 3679 -2919 2625 144 73 32 chr5 25116846 25117381 -177968151 + MER4-int LTR ERV1 3837 4393 -2205 2640 76 0 0 chr5 25117381 25117735 -177967797 - L1P LINE L1 -887 5259 4906 3339 83 40 2 chr5 25117735 25118200 -177967332 + L1PA7 LINE L1 5665 6152 -2 2091 119 37 11 chr5 25118207 25118559 -177966973 + MER4-int LTR ERV1 4392 4752 -1846 319 371 59 11 chr5 25118720 25118906 -177966626 - LTR16C LTR ERVL 0 491 297 410 339 67 38 chr5 25120347 25120719 -177964813 - HERVL LTR ERVL -1708 3946 3564 1233 344 85 73 chr5 25120811 25121192 -177964340 - HERVL LTR ERVL -2262 3392 3017 2375 74 7 3 chr5 25121192 25121501 -177964031 - AluY SINE Alu -1 310 1 1233 344 85 73 chr5 25121501 25123000 -177962532 - HERVL LTR ERVL -2637 3017 1489 289 236 0 47 chr5 25125328 25125455 -177960077 + T-rich Low_complexity Low_complexity 4 124 0 40 67 0 0 chr5 25125751 25125826 -177959706 + AT_rich Low_complexity Low_complexity 1 75 0 29 84 0 0 chr5 25125955 25126026 -177959506 + AT_rich Low_complexity Low_complexity 1 71 0 4106 204 19 38 chr5 25126033 25127575 -177957957 - L1MA4 LINE L1 -5 6166 4591 7774 18 0 2 chr5 25127677 25129278 -177956254 + L1PA2 LINE L1 4550 6151 -4 5302 138 18 0 chr5 25129638 25130783 -177954749 - L1PA14 LINE L1 0 6161 5002 1403 119 0 0 chr5 25130783 25130977 -177954555 - AluY SINE Alu -23 288 95 30 0 0 0 chr5 25131106 25131136 -177954396 + AT_rich Low_complexity Low_complexity 1 30 0 529 314 122 45 chr5 25131173 25131708 -177953824 - L1MEc LINE L1 -1940 4275 3700 387 269 70 57 chr5 25131710 25131810 -177953722 - L1MEc LINE L1 -3198 3017 2920 1832 170 0 0 chr5 25131810 25132132 -177953400 - AluSx SINE Alu 0 322 1 387 269 70 57 chr5 25132132 25132331 -177953201 - L1MEc LINE L1 -3295 2920 2713 441 304 101 29 chr5 25132447 25132873 -177952659 - L1MEc LINE L1 -3639 2576 2148 290 255 39 29 chr5 25133355 25133457 -177952075 - L1MEc LINE L1 -4752 1644 1542 228 293 24 24 chr5 25133578 25133660 -177951872 + MER96 DNA MER1_type? 1 82 -93 9881 207 26 25 chr5 25133812 25135519 -177950013 - L1M LINE L1 -743 5403 3705 1427 176 81 31 chr5 25135519 25135876 -177949656 - THE1C LTR MaLR 0 375 1 9881 207 26 25 chr5 25135876 25136662 -177948870 - L1M LINE L1 -2441 3705 2921 1196 235 104 22 chr5 25136826 25137192 -177948340 - MSTD LTR MaLR 0 396 1 28 0 0 0 chr5 25137327 25137355 -177948177 + AT_rich Low_complexity Low_complexity 1 28 0 1256 229 29 58 chr5 25137521 25137897 -177947635 + MLT1A1 LTR MaLR 1 365 0 1400 132 5 0 chr5 25137964 25138184 -177947348 + L1PA13 LINE L1 5939 6159 -4 728 168 0 23 chr5 25138198 25138329 -177947203 + FLAM_C SINE Alu 1 128 -5 24 53 0 0 chr5 25138344 25138382 -177947150 + AT_rich Low_complexity Low_complexity 1 38 0 949 40 8 16 chr5 25138395 25138519 -177947013 - L1PA5 LINE L1 -5 6149 6027 317 24 24 0 chr5 25138525 25138567 -177946965 + (TCC)n Simple_repeat Simple_repeat 3 45 0 23 0 0 0 chr5 25138922 25138945 -177946587 + AT_rich Low_complexity Low_complexity 1 23 0 197 277 0 0 chr5 25139529 25139576 -177945956 - MER5A DNA MER1_type -3 186 140 2301 64 30 0 chr5 25140326 25140623 -177944909 + AluY SINE Alu 1 306 -5 2077 121 7 0 chr5 25141017 25141315 -177944217 + AluSx SINE Alu 1 300 -12 1597 234 31 50 chr5 25141899 25142381 -177943151 - MLT1D LTR MaLR -7 498 26 910 235 88 22 chr5 25142989 25143261 -177942271 - MER2 DNA MER2_type 0 345 56 24 32 0 0 chr5 25143524 25143555 -177941977 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr5 25144014 25144039 -177941493 + AT_rich Low_complexity Low_complexity 1 25 0 192 339 100 23 chr5 25144239 25144369 -177941163 - MIR SINE MIR -75 187 48 2073 116 0 0 chr5 25144618 25144938 -177940594 - AluSx SINE Alu 0 320 1 1951 151 7 0 chr5 25146128 25146419 -177939113 - AluSq SINE Alu -18 295 3 1692 175 0 4 chr5 25146492 25146772 -177938760 + AluSx SINE Alu 11 289 -23 2111 134 73 20 chr5 25147188 25147532 -177938000 - THE1B LTR MaLR 0 364 3 11220 113 1 0 chr5 25147534 25149113 -177936419 - THE1B-int LTR MaLR 0 1580 1 1809 155 75 31 chr5 25149113 25149462 -177936070 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr5 25150584 25150605 -177934927 + AT_rich Low_complexity Low_complexity 1 21 0 23 101 0 0 chr5 25151120 25151199 -177934333 + AT_rich Low_complexity Low_complexity 1 79 0 30 83 0 0 chr5 25151315 25151387 -177934145 + AT_rich Low_complexity Low_complexity 1 72 0 23 33 0 0 chr5 25151568 25151598 -177933934 + AT_rich Low_complexity Low_complexity 1 30 0 261 236 34 67 chr5 25151678 25151767 -177933765 - L2 LINE L2 -3 3269 3184 223 330 68 0 chr5 25151996 25152099 -177933433 + MIR SINE MIR 82 191 -71 256 289 91 44 chr5 25152772 25153140 -177932392 + L1M4 LINE L1 5297 5574 -604 506 291 72 52 chr5 25153439 25153690 -177931842 + L1MCc LINE L1 343 598 -5825 974 292 88 23 chr5 25153732 25154163 -177931369 + L1MCc LINE L1 743 1201 -5222 292 216 103 10 chr5 25154195 25154320 -177931212 + L1MCc LINE L1 1440 1551 -4871 597 296 13 52 chr5 25154489 25154639 -177930893 - MER58A DNA MER1_type -2196 224 85 861 261 61 68 chr5 25154639 25155034 -177930498 + MSTD LTR MaLR 3 394 -2 597 296 13 52 chr5 25155034 25155116 -177930416 - MER58A DNA MER1_type -2335 85 1 202 361 0 0 chr5 25155169 25155230 -177930302 + L2 LINE L2 2698 2758 -556 282 337 111 12 chr5 25155388 25155560 -177929972 + L2 LINE L2 3125 3313 0 736 269 131 64 chr5 25155962 25156504 -177929028 + L1MC4a LINE L1 6448 6997 -811 1346 266 84 62 chr5 25156507 25157019 -177928513 + L1MC4 LINE L1 7238 7768 -274 1723 165 29 38 chr5 25157019 25157334 -177928198 - AluSx SINE Alu 0 312 1 1346 266 84 62 chr5 25157334 25157461 -177928071 + L1MC4 LINE L1 7768 7891 -151 2503 86 8 6 chr5 25157791 25158142 -177927390 - THE1A LTR MaLR -3 352 1 26 30 0 0 chr5 25158677 25158710 -177926822 + AT_rich Low_complexity Low_complexity 1 33 0 1396 208 10 20 chr5 25158944 25159237 -177926295 + AluJo SINE Alu 1 290 -22 1835 158 61 25 chr5 25159328 25159690 -177925842 + THE1C LTR MaLR 1 375 0 7968 165 25 55 chr5 25159693 25161319 -177924213 + THE1C-int LTR MaLR 4 1580 0 1451 165 135 15 chr5 25161321 25161654 -177923878 + THE1C LTR MaLR 3 375 0 218 372 13 0 chr5 25161764 25161842 -177923690 - MER5B DNA MER1_type -51 127 49 34021 42 31 2 chr5 25162561 25166834 -177918698 + L1P LINE L1 7 4404 -1742 27 29 0 0 chr5 25168216 25168250 -177917282 + AT_rich Low_complexity Low_complexity 1 34 0 2204 165 24 21 chr5 25168413 25168831 -177916701 + MSTA LTR MaLR 6 424 -4 827 233 17 0 chr5 25168836 25169012 -177916520 + MER58A DNA MER1_type 46 224 0 25 31 0 0 chr5 25170605 25170637 -177914895 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr5 25170707 25170728 -177914804 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr5 25170891 25170916 -177914616 + AT_rich Low_complexity Low_complexity 1 25 0 293 95 0 0 chr5 25171326 25171368 -177914164 + MLT2A1 LTR ERVL 390 431 -13 292 127 0 28 chr5 25171368 25171439 -177914093 + (TA)n Simple_repeat Simple_repeat 1 69 0 2135 122 40 92 chr5 25171474 25171900 -177913632 - MLT2A1 LTR ERVL -40 404 1 2065 213 12 2 chr5 25171900 25172309 -177913223 + MLT2C2 LTR ERVL 4 416 -48 1344 203 30 8 chr5 25172643 25172909 -177912623 - MLT1A1 LTR MaLR -80 285 14 260 210 113 0 chr5 25172921 25172983 -177912549 + Charlie1 DNA MER1_type 2675 2743 -18 220 410 50 3 chr5 25173045 25173328 -177912204 - L3 LINE CR1 -108 1469 1174 22 35 0 0 chr5 25173606 25173635 -177911897 + AT_rich Low_complexity Low_complexity 1 29 0 746 104 0 0 chr5 25173732 25173870 -177911662 - AluY SINE Alu 0 317 180 24 0 0 0 chr5 25173980 25174004 -177911528 + AT_rich Low_complexity Low_complexity 1 24 0 1930 244 84 36 chr5 25174025 25176001 -177909531 - L1MB7 LINE L1 -18 6166 3999 851 86 86 0 chr5 25176001 25176129 -177909403 + MER85 DNA T2_type 1 139 0 1930 244 84 36 chr5 25176129 25176586 -177908946 - L1MB7 LINE L1 -2185 3999 3565 1303 270 69 18 chr5 25176586 25177263 -177908269 - L1M4 LINE L1 -2354 3792 3081 * 2912 249 55 79 chr5 25177257 25177283 -177908249 - L1MC/D LINE L1 -743 5403 5378 200 35 35 0 chr5 25177283 25177312 -177908220 + (TTA)n Simple_repeat Simple_repeat 3 32 0 2912 249 55 79 chr5 25177312 25177787 -177907745 - L1MC/D LINE L1 -768 5378 4893 9490 85 15 1 chr5 25177787 25179885 -177905647 - L1PA7 LINE L1 -4 6150 4031 2912 249 55 79 chr5 25179885 25180300 -177905232 - L1MC/D LINE L1 -1253 4893 4470 2090 90 0 52 chr5 25180300 25180610 -177904922 + AluSg SINE Alu 1 294 -16 2912 249 55 79 chr5 25180610 25181527 -177904005 - L1MC/D LINE L1 -1676 4470 3726 1215 256 75 35 chr5 25181532 25182420 -177903112 - L1ME1 LINE L1 -272 5894 4964 23 54 0 0 chr5 25183610 25183647 -177901885 + AT_rich Low_complexity Low_complexity 1 37 0 2044 132 10 0 chr5 25185968 25186272 -177899260 - AluSx SINE Alu -2 310 4 280 340 40 10 chr5 25187143 25187243 -177898289 - L2 LINE L2 -7 3306 3204 537 257 80 5 chr5 25188188 25188375 -177897157 - MER67D LTR ERV1 -8 506 306 1187 176 59 99 chr5 25188419 25188743 -177896789 - MER67D LTR ERV1 -203 311 1 711 151 120 0 chr5 25189460 25189632 -177895900 - L1MA9 LINE L1 -9 6303 6112 7308 45 1 0 chr5 25189657 25191237 -177894295 - L1PA5 LINE L1 -3 6151 4570 22427 52 9 2 chr5 25191238 25194138 -177891394 + L1PA5 LINE L1 1631 4551 -1595 1417 188 71 8 chr5 25194178 25194444 -177891088 - AluJb SINE Alu -16 296 14 280 239 0 0 chr5 25194444 25194490 -177891042 - AluJ/monomer SINE Alu -257 46 1 1392 224 41 0 chr5 25194498 25194792 -177890740 - AluJo SINE Alu -6 306 1 26 0 0 0 chr5 25194831 25194857 -177890675 + AT_rich Low_complexity Low_complexity 1 26 0 243 322 112 34 chr5 25195128 25195333 -177890199 + L3 LINE CR1 888 1108 -469 552 316 116 12 chr5 25196400 25196720 -177888812 - MLT1K LTR MaLR -24 564 212 277 247 43 21 chr5 25196722 25196815 -177888717 - MLT1I LTR MaLR -8 401 307 1064 124 5 54 chr5 25197573 25197759 -177887773 + AluSg/x SINE Alu 133 309 -1 440 275 127 16 chr5 25198968 25199346 -177886186 + L1MC5 LINE L1 7327 7746 -215 225 279 62 0 chr5 25200545 25200674 -177884858 - L1ME LINE L1 -272 5849 5713 440 333 39 16 chr5 25200745 25201000 -177884532 + MLT1J1 LTR MaLR 7 267 -179 3017 221 62 29 chr5 25201148 25203000 -177882532 - L1MA9 LINE L1 -4 6330 4544 * 3271 242 15 7 chr5 25202987 25203852 -177881680 + L1 LINE L1 3304 4175 -1971 11855 217 23 77 chr5 25203889 25204260 -177881272 + L1PA15 LINE L1 1323 1712 -5104 1569 201 27 0 chr5 25204260 25204553 -177880979 - AluJb SINE Alu -11 301 1 11855 217 23 77 chr5 25204553 25204735 -177880797 + L1PA15 LINE L1 1712 1902 -4914 1977 142 23 7 chr5 25204735 25205038 -177880494 + AluSq SINE Alu 1 308 -5 11855 217 23 77 chr5 25205038 25208647 -177876885 + L1PA15 LINE L1 1902 5063 -1753 519 100 0 12 chr5 25208647 25208727 -177876805 + MADE1 DNA Mariner 2 80 0 11855 217 23 77 chr5 25208727 25210391 -177875141 + L1PA15 LINE L1 5063 6814 -2 1317 171 46 48 chr5 25210452 25210844 -177874688 + L1 LINE L1 4152 4542 -1604 291 380 38 5 chr5 25211905 25212089 -177873443 - LTR33 LTR ERVL -313 208 19 707 233 85 17 chr5 25213929 25214105 -177871427 - MLT1B LTR MaLR -3 387 200 244 206 24 67 chr5 25214449 25214614 -177870918 + (TTATA)n Simple_repeat Simple_repeat 1 158 0 29 0 0 0 chr5 25214757 25214786 -177870746 + AT_rich Low_complexity Low_complexity 1 29 0 225 65 0 0 chr5 25215012 25215043 -177870489 + (TG)n Simple_repeat Simple_repeat 2 32 0 279 289 22 0 chr5 25215043 25215133 -177870399 + (TA)n Simple_repeat Simple_repeat 2 93 0 22 56 0 0 chr5 25215305 25215341 -177870191 + AT_rich Low_complexity Low_complexity 1 36 0 6802 68 0 8 chr5 25215872 25217000 -177868532 - L1PA7 LINE L1 0 6154 5040 294 234 28 28 chr5 25217000 25217107 -177868425 + MER90 LTR ERV1 365 471 -104 526 174 146 56 chr5 25217113 25217257 -177868275 - MER39 LTR ERV1 -2 682 384 663 238 24 30 chr5 25217268 25217436 -177868096 - MER39 LTR ERV1 -201 506 340 451 252 94 16 chr5 25217558 25217685 -177867847 - MER39 LTR ERV1 -569 138 2 38 0 0 0 chr5 25217802 25217840 -177867692 + AT_rich Low_complexity Low_complexity 1 38 0 266 148 37 0 chr5 25218259 25218313 -177867219 + L1MC4 LINE L1 6648 6703 -1339 252 86 0 0 chr5 25218313 25218348 -177867184 + (TA)n Simple_repeat Simple_repeat 1 35 0 274 351 80 66 chr5 25218644 25218994 -177866538 + L2 LINE L2 2918 3272 0 484 295 52 6 chr5 25220250 25220423 -177865109 - MIR SINE MIR -14 248 68 1148 235 40 52 chr5 25220677 25221099 -177864433 - LTR56 LTR ERV1 -20 425 9 375 211 29 44 chr5 25221362 25221593 -177863939 - HERVS71 LTR ERV1 -840 5918 4646 2559 40 3 3 chr5 25222520 25222819 -177862713 + AluY SINE Alu 6 304 -7 2528 116 6 6 chr5 25223696 25224059 -177861473 - THE1B LTR MaLR 0 364 2 2074 86 7 0 chr5 25224670 25224974 -177860558 - L1P LINE L1 -860 5286 4981 3062 62 25 2 chr5 25224974 25225378 -177860154 + L1PA7 LINE L1 5730 6144 -10 1666 199 68 27 chr5 25225710 25225937 -177859595 - MSTB1 LTR MaLR 0 432 179 180 0 0 0 chr5 25225937 25225957 -177859575 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1666 199 68 27 chr5 25225957 25226142 -177859390 - MSTB1 LTR MaLR -253 179 3 285 269 65 11 chr5 25226251 25226344 -177859188 - HERVS71 LTR ERV1 -3390 5588 5491 713 224 13 70 chr5 25226597 25226825 -177858707 + L1P LINE L1 4605 4819 -1327 6170 102 20 0 chr5 25226837 25228273 -177857259 + L1PA11 LINE L1 4719 6172 -2 23 0 0 0 chr5 25229413 25229436 -177856096 + AT_rich Low_complexity Low_complexity 1 23 0 8622 116 23 2 chr5 25229670 25230927 -177854605 + HSMAR1 DNA Mariner 5 1287 0 1050 226 128 0 chr5 25231204 25231430 -177854102 - AluJo SINE Alu -56 256 2 207 0 0 0 chr5 25233150 25233173 -177852359 + (A)n Simple_repeat Simple_repeat 1 23 0 871 218 53 57 chr5 25233810 25234220 -177851312 - LTR56 LTR ERV1 0 437 44 186 317 161 41 chr5 25235120 25235511 -177850021 - L2 LINE L2 -791 2523 2086 404 291 55 12 chr5 25235572 25235737 -177849795 - LTR33A LTR ERVL -5 518 347 231 329 0 0 chr5 25236575 25236648 -177848884 - LTR16A1 LTR ERVL -11 446 374 1700 224 35 69 chr5 25237995 25238127 -177847405 - MLT1C LTR MaLR -2 465 330 2494 68 3 0 chr5 25238127 25238437 -177847095 - AluY SINE Alu 0 311 1 1700 224 35 69 chr5 25238437 25238785 -177846747 - MLT1C LTR MaLR -137 330 1 207 167 0 0 chr5 25238820 25238856 -177846676 + (TG)n Simple_repeat Simple_repeat 1 36 0 458 348 81 24 chr5 25238981 25239464 -177846068 - HERVL LTR ERVL -1900 3096 2816 27 0 0 0 chr5 25239668 25239695 -177845837 + AT_rich Low_complexity Low_complexity 1 27 0 227 37 0 0 chr5 25239958 25239985 -177845547 + L1MA1 LINE L1 6232 6258 -44 299 261 49 44 chr5 25240226 25240382 -177845150 - HERVL LTR ERVL -4083 1681 1484 230 280 108 11 chr5 25240478 25240571 -177844961 - MLT1G1 LTR MaLR -18 577 476 1991 127 0 3 chr5 25241529 25241974 -177843558 + AluY SINE Alu 1 444 0 729 151 96 36 chr5 25242340 25242506 -177843026 + MER96B DNA MER1_type? 4 179 -238 3901 176 32 7 chr5 25243955 25245250 -177840282 - L1PA15 LINE L1 -181 5984 4662 4106 251 40 31 chr5 25245280 25246562 -177838970 - L1PA13 LINE L1 -4470 2327 564 1794 198 110 0 chr5 25246636 25247019 -177838513 + MSTB1 LTR MaLR 5 429 -3 194 361 167 27 chr5 25247022 25247460 -177838072 + L2 LINE L2 926 1424 -1890 270 236 11 34 chr5 25248431 25248520 -177837012 + L1ME4a LINE L1 5970 6056 -65 3870 176 89 50 chr5 25248566 25249523 -177836009 - L1MA9 LINE L1 -30 6282 5289 637 239 15 20 chr5 25249526 25249723 -177835809 + L1MA9 LINE L1 5096 5291 -855 1860 79 35 28 chr5 25249885 25250175 -177835357 - AluY SINE Alu -19 292 1 1916 180 16 0 chr5 25250183 25250560 -177834972 - L1MB1 LINE L1 -5 6163 5781 25 0 0 0 chr5 25251012 25251037 -177834495 + AT_rich Low_complexity Low_complexity 1 25 0 2454 54 0 0 chr5 25251100 25251395 -177834137 - AluY SINE Alu -5 306 12 243 287 10 30 chr5 25251677 25251778 -177833754 + (TATATG)n Simple_repeat Simple_repeat 2 100 0 38 51 0 0 chr5 25251907 25251966 -177833566 + AT_rich Low_complexity Low_complexity 1 59 0 26 93 0 0 chr5 25252199 25252274 -177833258 + AT_rich Low_complexity Low_complexity 1 75 0 22 35 0 0 chr5 25252573 25252602 -177832930 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr5 25252663 25252687 -177832845 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr5 25252728 25252766 -177832766 + AT_rich Low_complexity Low_complexity 1 38 0 214 270 0 0 chr5 25254141 25254204 -177831328 + T-rich Low_complexity Low_complexity 1 63 0 230 95 0 24 chr5 25254322 25254364 -177831168 + Alu SINE Alu 241 281 -20 1418 185 22 25 chr5 25254464 25254740 -177830792 + AluJb SINE Alu 38 312 0 9976 164 48 3 chr5 25254899 25255506 -177830026 + Tigger1 DNA MER2_type 1 579 -1839 1885 86 4 0 chr5 25255506 25255750 -177829782 + AluY SINE Alu 51 295 -16 9976 164 48 3 chr5 25255750 25256954 -177828578 + Tigger1 DNA MER2_type 579 1893 -525 6070 64 232 72 chr5 25256955 25258046 -177827486 - MER11A LTR ERVK 0 1266 1 2596 183 27 9 chr5 25258046 25258567 -177826965 + Tigger1 DNA MER2_type 1889 2418 0 1384 328 64 19 chr5 25259214 25259727 -177825805 + L1M4b LINE L1 182 717 -6142 1187 241 13 77 chr5 25259730 25260120 -177825412 + MLT1A2 LTR MaLR 4 368 -6 3286 259 66 24 chr5 25260126 25261803 -177823729 + L1M4b LINE L1 713 2493 -4464 1016 209 27 128 chr5 25261842 25262248 -177823284 - MLT1A1 LTR MaLR 0 365 1 1183 290 36 32 chr5 25262323 25263364 -177822168 + L1M4b LINE L1 2469 3467 -3490 494 310 70 20 chr5 25263437 25263740 -177821792 - L1ME LINE L1 -4999 1071 751 23 0 0 0 chr5 25263796 25263819 -177821713 + AT_rich Low_complexity Low_complexity 1 23 0 212 211 19 19 chr5 25264294 25264346 -177821186 + (TATG)n Simple_repeat Simple_repeat 4 55 0 369 0 0 0 chr5 25264677 25264718 -177820814 + (CA)n Simple_repeat Simple_repeat 2 42 0 28 0 0 0 chr5 25265487 25265515 -177820017 + AT_rich Low_complexity Low_complexity 1 28 0 969 244 103 53 chr5 25265908 25266248 -177819284 + MER57A LTR ERV1 47 403 0 729 280 55 21 chr5 25266251 25266487 -177819045 + MER57A-int LTR ERV1 3 246 -7291 21 36 0 0 chr5 25267105 25267133 -177818399 + AT_rich Low_complexity Low_complexity 1 28 0 202 152 0 0 chr5 25267317 25267331 -177818201 + (CAAA)n Simple_repeat Simple_repeat 2 15 -19 1921 167 0 3 chr5 25267331 25267642 -177817890 + AluSx SINE Alu 1 310 -2 202 152 0 0 chr5 25267642 25267660 -177817872 + (CAAA)n Simple_repeat Simple_repeat 14 34 0 973 222 125 27 chr5 25267709 25268038 -177817494 + MER57A-int LTR ERV1 1066 1426 -3510 1908 158 0 3 chr5 25268046 25268331 -177817201 + AluSx SINE Alu 4 287 -25 657 144 10 0 chr5 25268524 25268628 -177816904 + MER34 LTR ERV1 133 237 -305 360 219 0 0 chr5 25268628 25268692 -177816840 + MER34 LTR ERV1 476 539 -3 1544 328 25 28 chr5 25268949 25269669 -177815863 + MER57-int LTR ERV1 6253 6970 -567 862 182 158 111 chr5 25269893 25270234 -177815298 + MER57A LTR ERV1 45 401 -2 241 152 0 0 chr5 25270943 25270989 -177814543 - LTR66 LTR ERVL -171 439 394 611 231 86 27 chr5 25271643 25271829 -177813703 - MER105 DNA DNA -2 202 6 22 0 0 0 chr5 25272379 25272401 -177813131 + AT_rich Low_complexity Low_complexity 1 22 0 190 364 26 0 chr5 25272437 25272514 -177813018 + MIR SINE MIR 74 152 -110 21 36 0 0 chr5 25274079 25274107 -177811425 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr5 25274190 25274229 -177811303 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr5 25276921 25276944 -177808588 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr5 25277284 25277305 -177808227 + AT_rich Low_complexity Low_complexity 1 21 0 243 234 130 0 chr5 25277729 25277806 -177807726 + L1MC/D LINE L1 5728 5814 -1994 22 35 0 0 chr5 25278188 25278217 -177807315 + AT_rich Low_complexity Low_complexity 1 29 0 186 133 0 0 chr5 25278670 25278700 -177806832 + (TG)n Simple_repeat Simple_repeat 1 30 0 201 121 0 0 chr5 25279043 25279076 -177806456 + (CA)n Simple_repeat Simple_repeat 2 34 0 358 309 0 0 chr5 25281088 25281172 -177804360 + MLT1E LTR MaLR 324 407 -186 1139 234 53 30 chr5 25281553 25281946 -177803586 - LTR52 LTR ERVL -19 402 1 535 324 48 20 chr5 25282068 25282318 -177803214 - MLT1H LTR MaLR -292 257 1 22 35 0 0 chr5 25283101 25283130 -177802402 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr5 25283322 25283361 -177802171 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr5 25284141 25284163 -177801369 + AT_rich Low_complexity Low_complexity 1 22 0 1359 229 104 69 chr5 25284473 25285008 -177800524 + Charlie1 DNA MER1_type 47 609 -2152 1280 238 13 17 chr5 25285008 25285335 -177800197 + AluJo SINE Alu 1 302 0 1359 229 104 69 chr5 25285335 25285424 -177800108 + Charlie1 DNA MER1_type 609 693 -2068 291 182 80 34 chr5 25285427 25285515 -177800017 + Charlie1 DNA MER1_type 921 1012 -1749 1109 221 130 109 chr5 25285531 25286047 -177799485 + Charlie1 DNA MER1_type 1622 2126 -635 2278 62 0 3 chr5 25286047 25286337 -177799195 + AluY SINE Alu 1 289 -22 1109 221 130 109 chr5 25286337 25286606 -177798926 + Charlie1 DNA MER1_type 2126 2388 -373 1778 136 38 14 chr5 25286606 25286893 -177798639 - AluSx SINE Alu -6 306 13 1109 221 130 109 chr5 25286893 25286979 -177798553 + Charlie1 DNA MER1_type 2388 2471 -290 1938 138 37 0 chr5 25286979 25287276 -177798256 - AluSx SINE Alu -4 308 1 1109 221 130 109 chr5 25287276 25287440 -177798092 + Charlie1 DNA MER1_type 2471 2681 -80 560 68 11 23 chr5 25287440 25287528 -177798004 - L1MA3 LINE L1 -13 6292 6206 26 30 0 0 chr5 25287539 25287572 -177797960 + AT_rich Low_complexity Low_complexity 1 33 0 314 156 104 65 chr5 25287895 25287972 -177797560 - Charlie1 DNA MER1_type 0 2761 2682 5130 173 23 8 chr5 25287973 25289818 -177795714 - L1MA3 LINE L1 -156 6149 4273 24 32 0 0 chr5 25289864 25289895 -177795637 + AT_rich Low_complexity Low_complexity 1 31 0 42565 36 21 1 chr5 25290746 25296778 -177788754 - L1PA3 LINE L1 0 6155 2 24 0 0 0 chr5 25297199 25297223 -177788309 + AT_rich Low_complexity Low_complexity 1 24 0 311 171 29 0 chr5 25298959 25299029 -177786503 + (TATG)n Simple_repeat Simple_repeat 4 75 0 1927 154 148 13 chr5 25299781 25300158 -177785374 + MSTA LTR MaLR 1 428 0 26 50 0 0 chr5 25300558 25300598 -177784934 + AT_rich Low_complexity Low_complexity 1 40 0 206 265 0 0 chr5 25300651 25300700 -177784832 + (TA)n Simple_repeat Simple_repeat 1 49 0 210 208 0 0 chr5 25301275 25301323 -177784209 + CT-rich Low_complexity Low_complexity 5 52 0 1904 131 45 0 chr5 25301825 25301944 -177783588 + AluSq SINE Alu 1 113 -200 887 0 0 10 chr5 25301944 25302048 -177783484 + (TAAAA)n Simple_repeat Simple_repeat 2 104 0 1904 131 45 0 chr5 25302048 25302219 -177783313 + AluSq SINE Alu 113 304 -9 22 0 0 0 chr5 25302263 25302285 -177783247 + AT_rich Low_complexity Low_complexity 1 22 0 245 273 42 79 chr5 25302451 25302616 -177782916 + MLT1L LTR MaLR 417 575 -40 21 36 0 0 chr5 25302741 25302769 -177782763 + AT_rich Low_complexity Low_complexity 1 28 0 2282 107 0 0 chr5 25303256 25303566 -177781966 - AluSg SINE Alu 0 310 1 24 0 0 0 chr5 25304981 25305005 -177780527 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr5 25306029 25306052 -177779480 + AT_rich Low_complexity Low_complexity 1 23 0 210 171 0 0 chr5 25306104 25306139 -177779393 + A-rich Low_complexity Low_complexity 1 35 0 199 333 42 85 chr5 25306743 25306932 -177778600 + L3 LINE CR1 538 718 -859 588 263 44 35 chr5 25307230 25307458 -177778074 - MER115 DNA AcHobo -10 683 454 348 336 137 38 chr5 25307455 25307747 -177777785 - LTR16A1 LTR ERVL -136 321 1 * 1250 359 70 32 chr5 25307874 25309108 -177776424 - ERVL LTR ERVL -380 5384 4103 434 333 46 56 chr5 25309241 25309635 -177775897 - ERVL LTR ERVL -1892 3872 3483 2272 180 31 10 chr5 25309852 25310269 -177775263 + MSTB LTR MaLR 1 426 0 367 283 19 0 chr5 25310647 25310753 -177774779 + HERV16 LTR ERVL 2683 2790 -2206 339 44 0 0 chr5 25310755 25310800 -177774732 + (CA)n Simple_repeat Simple_repeat 2 46 0 236 250 17 0 chr5 25310904 25310964 -177774568 - LTR16A1 LTR ERVL -385 72 12 2084 99 45 3 chr5 25311229 25311521 -177774011 - AluSc SINE Alu -4 305 2 23 33 0 0 chr5 25311780 25311810 -177773722 + AT_rich Low_complexity Low_complexity 1 30 0 30 45 0 0 chr5 25311997 25312041 -177773491 + AT_rich Low_complexity Low_complexity 1 44 0 802 71 18 0 chr5 25312142 25312254 -177773278 + L1PA7 LINE L1 6038 6151 -3 1095 255 59 47 chr5 25312260 25312769 -177772763 - L1ME1 LINE L1 -5 6161 5647 201 245 43 0 chr5 25312774 25312868 -177772664 + T-rich Low_complexity Low_complexity 4 101 0 * 292 260 35 0 chr5 25312821 25312990 -177772542 + (TA)n Simple_repeat Simple_repeat 2 176 0 593 270 53 11 chr5 25313022 25313211 -177772321 - L1ME1 LINE L1 -1886 4260 4064 1962 130 16 3 chr5 25313211 25313519 -177772013 - THE1C LTR MaLR 0 375 64 650 268 6 28 chr5 25313627 25313827 -177771705 - MLT2C1 LTR ERVL -37 427 164 1267 125 0 0 chr5 25313829 25314013 -177771519 + AluSc SINE Alu 126 309 0 608 238 6 25 chr5 25314029 25314142 -177771390 - MLT2C1 LTR ERVL -227 170 59 13007 171 21 3 chr5 25314142 25316517 -177769015 - Tigger1 DNA MER2_type 0 2418 1 608 238 6 25 chr5 25316517 25316563 -177768969 - MLT2C1 LTR ERVL -338 59 14 1901 100 89 0 chr5 25317285 25317555 -177767977 + AluSg SINE Alu 1 294 -16 4298 170 36 26 chr5 25318107 25319325 -177766207 + L1PA16 LINE L1 4930 6161 -5 928 163 48 12 chr5 25319498 25319664 -177765868 - MLT2B2 LTR ERVL -343 172 1 24 0 0 0 chr5 25319816 25319840 -177765692 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr5 25320508 25320544 -177764988 + AT_rich Low_complexity Low_complexity 1 36 0 216 286 0 0 chr5 25321267 25321330 -177764202 + T-rich Low_complexity Low_complexity 1 63 0 20352 53 5 2 chr5 25322343 25324980 -177760552 - L1P LINE L1 -1871 4275 1631 7353 39 1 1 chr5 25324981 25326557 -177758975 + L1PA5 LINE L1 4570 6146 -8 793 169 26 32 chr5 25326650 25326804 -177758728 - MSTA LTR MaLR -58 370 218 1742 281 40 12 chr5 25327145 25327797 -177757735 - L1MC4 LINE L1 -479 7563 6894 318 263 88 9 chr5 25327792 25327906 -177757626 + L1MC4 LINE L1 7547 7669 -373 * 762 264 104 22 chr5 25327948 25328350 -177757182 + L1MC4 LINE L1 7605 8039 -3 185 143 0 41 chr5 25328565 25328614 -177756918 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 291 100 29 0 chr5 25329292 25329361 -177756171 - L1PA6 LINE L1 -3 6151 6078 400 321 33 72 chr5 25330951 25331340 -177754192 + HAL1b LINE L1 62 435 -913 21 0 0 0 chr5 25331538 25331559 -177753973 + AT_rich Low_complexity Low_complexity 1 21 0 250 329 92 0 chr5 25331790 25331942 -177753590 - L1MC4 LINE L1 -2337 5471 5306 189 0 0 0 chr5 25332207 25332228 -177753304 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 535 174 107 40 chr5 25332399 25332548 -177752984 + MER76 LTR ERV 12 170 -518 25 0 0 0 chr5 25333062 25333087 -177752445 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr5 25333536 25333569 -177751963 + AT_rich Low_complexity Low_complexity 1 33 0 5200 169 19 28 chr5 25333569 25333848 -177751684 + L1MA4A LINE L1 5105 5385 -918 297 0 0 0 chr5 25333848 25333881 -177751651 + (TG)n Simple_repeat Simple_repeat 2 34 0 2107 128 3 0 chr5 25333889 25334186 -177751346 - AluSx SINE Alu -14 298 1 5200 169 19 28 chr5 25334186 25335101 -177750431 + L1MA4A LINE L1 5392 6298 -5 1902 148 0 7 chr5 25335286 25335589 -177749943 - AluSx SINE Alu -11 301 1 412 171 40 0 chr5 25335617 25335693 -177749839 + AluS SINE Alu 1 79 -223 1600 158 18 0 chr5 25335817 25336101 -177749431 + AluSx SINE Alu 24 312 0 385 280 136 23 chr5 25336636 25337033 -177748499 - HAL1b LINE L1 -55 1293 852 398 288 9 9 chr5 25337345 25337456 -177748076 - HAL1b LINE L1 -903 445 335 21 0 0 0 chr5 25338507 25338528 -177747004 + AT_rich Low_complexity Low_complexity 1 21 0 1635 100 4 0 chr5 25338865 25339094 -177746438 - MER30 DNA MER1_type 0 230 1 2144 121 0 31 chr5 25339904 25340226 -177745306 - AluSx SINE Alu 0 312 1 209 184 41 0 chr5 25340951 25341000 -177744532 + A-rich Low_complexity Low_complexity 1 51 0 260 385 107 6 chr5 25341053 25341380 -177744152 + L2 LINE L2 2272 2631 -683 337 253 21 0 chr5 25341491 25341586 -177743946 - MER58 DNA MER1_type -22 2398 2302 292 341 47 8 chr5 25342043 25342172 -177743360 + L2 LINE L2 2733 2866 -448 309 327 84 40 chr5 25342254 25342551 -177742981 + L2 LINE L2 3003 3312 -1 1307 229 26 23 chr5 25343011 25343313 -177742219 + AluJo SINE Alu 3 305 -7 41 36 0 0 chr5 25343313 25343368 -177742164 + AT_rich Low_complexity Low_complexity 1 55 0 387 309 18 36 chr5 25344266 25344486 -177741046 - HAL1b LINE L1 -902 446 231 204 40 0 0 chr5 25344916 25344941 -177740591 + (TC)n Simple_repeat Simple_repeat 1 25 0 261 146 0 0 chr5 25344957 25345005 -177740527 + (TA)n Simple_repeat Simple_repeat 1 48 0 1266 151 55 0 chr5 25345842 25346060 -177739472 + MER30 DNA MER1_type 1 230 0 380 324 27 0 chr5 25346502 25346650 -177738882 - MER104 DNA Tc2 -28 152 1 39 22 0 0 chr5 25347508 25347554 -177737978 + AT_rich Low_complexity Low_complexity 1 46 0 552 210 0 0 chr5 25348097 25348197 -177737335 + Tigger3(Golem) DNA MER2_type 1 100 -2929 2451 75 0 0 chr5 25348202 25348509 -177737023 - AluY SINE Alu -4 307 1 3707 145 68 20 chr5 25348519 25349230 -177736302 + Tigger3(Golem) DNA MER2_type 2285 3029 0 439 366 25 15 chr5 25349732 25349974 -177735558 - ERVL LTR ERVL -2835 2209 1910 216 0 0 0 chr5 25351081 25351105 -177734427 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 614 219 4 122 chr5 25351924 25352161 -177733371 + MER63A DNA MER1_type 2 210 0 282 302 123 0 chr5 25352161 25352267 -177733265 - LTR33 LTR ERVL -131 390 272 477 283 66 15 chr5 25352303 25352501 -177733031 - LTR33 LTR ERVL -306 215 8 390 162 0 0 chr5 25352501 25352575 -177732957 + (TA)n Simple_repeat Simple_repeat 2 75 0 1396 214 45 60 chr5 25353310 25353712 -177731820 - MSTD LTR MaLR 0 396 1 24 85 0 0 chr5 25353810 25353869 -177731663 + AT_rich Low_complexity Low_complexity 1 59 0 216 291 0 0 chr5 25353932 25353987 -177731545 - MIR SINE MIR -145 117 63 38 0 0 0 chr5 25354385 25354423 -177731109 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr5 25354801 25354823 -177730709 + AT_rich Low_complexity Low_complexity 1 22 0 198 192 0 0 chr5 25354946 25354998 -177730534 + (TA)n Simple_repeat Simple_repeat 2 53 0 812 256 20 10 chr5 25355005 25355204 -177730328 - MLT1B LTR MaLR 0 390 190 2427 43 0 3 chr5 25355279 25355614 -177729918 - AluY SINE Alu 0 334 1 1039 72 7 26 chr5 25355621 25355774 -177729758 - L1PA8 LINE L1 -4 6168 6019 985 57 0 0 chr5 25355774 25355898 -177729634 + L1PA8 LINE L1 5733 5856 -316 649 235 24 18 chr5 25355898 25356064 -177729468 - MLT1B LTR MaLR -206 168 2 23 0 0 0 chr5 25356096 25356119 -177729413 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr5 25356299 25356328 -177729204 + AT_rich Low_complexity Low_complexity 1 29 0 2261 114 0 0 chr5 25357618 25357917 -177727615 + AluSx SINE Alu 5 303 -9 26 0 0 0 chr5 25357983 25358009 -177727523 + AT_rich Low_complexity Low_complexity 1 26 0 411 123 0 0 chr5 25359382 25359463 -177726069 + (TTC)n Simple_repeat Simple_repeat 2 82 0 1401 196 28 25 chr5 25359467 25359753 -177725779 - AluJo SINE Alu -9 303 17 360 0 0 0 chr5 25359754 25359794 -177725738 + (CA)n Simple_repeat Simple_repeat 2 41 0 706 299 55 13 chr5 25359824 25360007 -177725525 - L1MC4a LINE L1 -1870 5938 5764 3439 65 0 7 chr5 25360007 25360456 -177725076 + L1PA5 LINE L1 5696 6141 -13 706 299 55 13 chr5 25360456 25360653 -177724879 - L1MC4a LINE L1 -2044 5764 5542 21 36 0 0 chr5 25362343 25362371 -177723161 + AT_rich Low_complexity Low_complexity 1 28 0 876 255 81 26 chr5 25362406 25362531 -177723001 + MER21B LTR ERV1 451 568 -295 405 0 0 0 chr5 25362531 25362576 -177722956 + (TG)n Simple_repeat Simple_repeat 2 46 0 876 255 81 26 chr5 25362576 25362721 -177722811 + MER21B LTR ERV1 568 736 -127 191 296 182 11 chr5 25363468 25363556 -177721976 - MIR3 SINE MIR -100 108 6 345 298 48 0 chr5 25364616 25364720 -177720812 + MIR SINE MIR 32 140 -122 424 318 47 6 chr5 25365150 25365320 -177720212 - MIR SINE MIR -66 196 20 643 304 22 0 chr5 25365953 25366137 -177719395 - MER5A DNA MER1_type -1 188 1 23 0 0 0 chr5 25366477 25366500 -177719032 + AT_rich Low_complexity Low_complexity 1 23 0 663 81 0 0 chr5 25366916 25367015 -177718517 + (TTC)n Simple_repeat Simple_repeat 2 100 0 22 0 0 0 chr5 25367048 25367070 -177718462 + AT_rich Low_complexity Low_complexity 1 22 0 509 221 125 2 chr5 25367881 25368156 -177717376 + L1MDa LINE L1 2449 2756 -3784 186 189 0 0 chr5 25368162 25368199 -177717333 + (TA)n Simple_repeat Simple_repeat 1 37 0 1149 254 61 20 chr5 25368284 25368744 -177716788 + L1MDa LINE L1 2774 3252 -3288 929 145 32 59 chr5 25368745 25368966 -177716566 + L1MD1 LINE L1 6028 6242 0 2035 106 3 61 chr5 25368975 25369286 -177716246 + AluSx SINE Alu 1 293 -19 311 289 22 0 chr5 25369324 25369414 -177716118 + L1M4 LINE L1 4390 4481 -1665 711 299 38 31 chr5 25369438 25369959 -177715573 + L1M4 LINE L1 4643 5167 -979 652 130 0 0 chr5 25370013 25370113 -177715419 - HY3 scRNA scRNA 0 101 2 248 256 0 13 chr5 25370200 25370252 -177715280 + (TA)n Simple_repeat Simple_repeat 2 54 -24 536 113 0 0 chr5 25370252 25370332 -177715200 + MADE1 DNA Mariner 1 80 0 248 256 0 13 chr5 25370332 25370357 -177715175 + (TA)n Simple_repeat Simple_repeat 54 78 0 1557 209 61 125 chr5 25370378 25370562 -177714970 - MER77 LTR ERV1 0 605 411 1421 246 28 14 chr5 25370562 25370919 -177714613 + MLT1A1 LTR MaLR 4 365 0 1557 209 61 125 chr5 25370919 25371356 -177714176 - MER77 LTR ERV1 -194 411 24 1151 234 19 19 chr5 25371372 25371633 -177713899 + MLT1A1 LTR MaLR 105 365 0 2493 130 3 8 chr5 25371930 25372307 -177713225 + THE1C LTR MaLR 1 375 0 268 397 21 7 chr5 25372805 25372946 -177712586 + HAL1 LINE L1 533 675 -1832 348 251 97 75 chr5 25373019 25373514 -177712018 + HAL1 LINE L1 810 1315 -1192 346 364 48 24 chr5 25373635 25373926 -177711606 + HAL1 LINE L1 1510 1807 -700 742 199 0 8 chr5 25374682 25374813 -177710719 - FLAM_C SINE Alu -13 130 1 191 111 0 28 chr5 25375159 25375195 -177710337 + (GAA)n Simple_repeat Simple_repeat 2 36 0 758 250 71 5 chr5 25376189 25376282 -177709250 + MER58A DNA MER1_type 1 86 -2334 357 24 0 0 chr5 25376282 25376324 -177709208 + (TA)n Simple_repeat Simple_repeat 1 42 0 * 405 0 0 0 chr5 25376323 25376368 -177709164 + (GA)n Simple_repeat Simple_repeat 2 46 0 758 250 71 5 chr5 25376324 25376470 -177709062 + MER58A DNA MER1_type 86 209 -15 22 0 0 0 chr5 25376676 25376698 -177708834 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr5 25376820 25376846 -177708686 + AT_rich Low_complexity Low_complexity 1 26 0 26 64 0 0 chr5 25377113 25377160 -177708372 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr5 25377192 25377222 -177708310 + AT_rich Low_complexity Low_complexity 1 30 0 1333 205 0 60 chr5 25378048 25378346 -177707186 - AluJo SINE Alu -30 282 3 183 139 0 0 chr5 25379410 25379446 -177706086 + (TC)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr5 25379675 25379696 -177705836 + AT_rich Low_complexity Low_complexity 1 21 0 192 107 0 0 chr5 25380613 25380641 -177704891 + L2 LINE L2 2215 2242 -1072 254 275 62 0 chr5 25380666 25380746 -177704786 + L2 LINE L2 2216 2300 -1014 602 229 0 16 chr5 25380895 25381017 -177704515 + MLT2C1 LTR ERVL 208 327 -70 6976 206 93 67 chr5 25381022 25383429 -177702103 + Tigger2 DNA MER2_type 1 2468 -250 2322 86 0 0 chr5 25383429 25383719 -177701813 + AluY SINE Alu 1 290 -21 1297 200 13 172 chr5 25383893 25383974 -177701558 + MER67C LTR ERV1 1 93 -551 577 153 95 0 chr5 25383974 25384111 -177701421 - L1MA9 LINE L1 0 6312 6163 1297 200 13 172 chr5 25384111 25384220 -177701312 + MER67C LTR ERV1 93 218 -426 2263 110 3 0 chr5 25384220 25384528 -177701004 - AluSx SINE Alu -3 309 1 1297 200 13 172 chr5 25384528 25384781 -177700751 + MER67C LTR ERV1 218 403 -241 281 138 52 17 chr5 25384808 25384866 -177700666 + MER67D LTR ERV1 455 514 0 505 313 82 5 chr5 25384867 25385075 -177700457 - MLT2F LTR ERVL -152 511 288 1242 156 9 17 chr5 25385131 25385362 -177700170 + MER4D LTR ERV1 1 229 -674 1392 159 30 81 chr5 25385664 25385998 -177699534 - MER44D DNA MER2_type 0 609 23 795 293 12 12 chr5 25387154 25387396 -177698136 + MLT1A1 LTR MaLR 113 354 -11 3041 174 64 33 chr5 25387400 25387512 -177698020 - ERVL LTR ERVL -990 4774 4667 1996 145 129 8 chr5 25387512 25387892 -177697640 - MSTA LTR MaLR -2 426 1 3041 174 64 33 chr5 25387892 25388390 -177697142 - ERVL LTR ERVL -1097 4667 4145 * 10405 220 29 16 chr5 25388387 25390318 -177695214 - ERVL LTR ERVL -1789 3975 2071 1586 165 132 26 chr5 25390318 25390705 -177694827 + MSTA LTR MaLR 1 428 0 7579 176 33 42 chr5 25390705 25391205 -177694327 + MSTA-int LTR MaLR 1 504 -1076 1680 131 29 0 chr5 25391205 25391450 -177694082 + AluSx SINE Alu 61 312 0 7579 176 33 42 chr5 25391450 25392371 -177693161 + MSTA-int LTR MaLR 504 1409 -171 180 0 0 0 chr5 25392371 25392391 -177693141 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 7579 176 33 42 chr5 25392391 25392562 -177692970 + MSTA-int LTR MaLR 1409 1580 0 1914 157 93 42 chr5 25392562 25392749 -177692783 + MSTA LTR MaLR 1 177 -251 2215 130 0 0 chr5 25392749 25393057 -177692475 + AluSx SINE Alu 1 308 -4 1914 157 93 42 chr5 25393057 25393276 -177692256 + MSTA LTR MaLR 177 428 0 10405 220 29 16 chr5 25393276 25395082 -177690450 - ERVL LTR ERVL -3692 2072 102 1438 176 0 4 chr5 25395088 25395344 -177690188 - L1PA15 LINE L1 -1 6164 5910 3928 204 34 18 chr5 25395444 25395939 -177689593 - L1PA15 LINE L1 -303 5863 5377 1870 165 38 22 chr5 25395939 25396308 -177689224 - THE1C LTR MaLR 0 375 1 3928 204 34 18 chr5 25396308 25397443 -177688089 - L1PA15 LINE L1 -789 5377 4207 200 114 45 0 chr5 25397494 25397538 -177687994 + (TTAA)n Simple_repeat Simple_repeat 2 47 0 9812 80 9 3 chr5 25397619 25399748 -177685784 - L1PA7 LINE L1 -3 6151 4011 27 29 0 0 chr5 25400307 25400341 -177685191 + AT_rich Low_complexity Low_complexity 1 34 0 238 220 0 0 chr5 25400738 25400788 -177684744 + (TA)n Simple_repeat Simple_repeat 1 50 0 1155 240 42 0 chr5 25403107 25403415 -177682117 + L1MC3 LINE L1 7342 7662 -123 710 210 41 82 chr5 25403517 25403589 -177681943 - MER6B DNA MER2_type -655 210 137 1191 214 62 22 chr5 25403589 25403864 -177681668 + AluJb SINE Alu 1 286 -16 237 65 0 0 chr5 25403864 25403895 -177681637 + (CATA)n Simple_repeat Simple_repeat 2 32 0 710 210 41 82 chr5 25403895 25404040 -177681492 - MER6B DNA MER2_type -726 139 1 2047 181 14 3 chr5 25404723 25405094 -177680438 - Tigger1 DNA MER2_type -2043 375 1 1198 273 99 44 chr5 25405094 25405548 -177679984 - MLT1F LTR MaLR -63 479 1 2229 281 97 43 chr5 25407520 25410131 -177675401 + L1ME1 LINE L1 3025 5779 -385 673 315 103 7 chr5 25410151 25410576 -177674956 + L1ME2 LINE L1 5689 6154 -10 21 57 0 0 chr5 25410900 25410935 -177674597 + AT_rich Low_complexity Low_complexity 1 35 0 316 273 137 39 chr5 25411189 25411445 -177674087 - L1ME LINE L1 -3132 2948 2668 383 309 73 55 chr5 25411556 25411993 -177673539 - L1ME LINE L1 -3568 2512 2068 1581 220 20 37 chr5 25412465 25412505 -177673027 - MLT2B3 LTR ERVL 0 554 515 594 93 0 0 chr5 25412505 25412591 -177672941 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 1581 220 20 37 chr5 25412591 25413161 -177672371 - MLT2B3 LTR ERVL -39 515 3 208 135 0 0 chr5 25417314 25417351 -177668181 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1629 211 30 19 chr5 25417597 25417958 -177667574 + MLT1A1 LTR MaLR 1 365 0 240 229 16 0 chr5 25418084 25418145 -177667387 + L1ME1 LINE L1 6097 6158 -8 671 276 36 14 chr5 25418172 25418393 -177667139 + L1ME1 LINE L1 5936 6161 -5 452 228 12 84 chr5 25419299 25419462 -177666070 - MLT2F LTR ERVL -4 659 509 444 193 0 23 chr5 25419462 25419543 -177665989 + MER67D LTR ERV1 1 81 -433 659 131 95 0 chr5 25419543 25419680 -177665852 - L1MA9 LINE L1 0 6312 6163 889 213 48 30 chr5 25419704 25419788 -177665744 + MER67C LTR ERV1 64 145 -565 1994 142 3 0 chr5 25419788 25420097 -177665435 - AluSx SINE Alu -2 310 1 889 213 48 30 chr5 25420097 25420242 -177665290 + MER67C LTR ERV1 145 297 -413 3114 181 34 26 chr5 25420350 25420976 -177664556 + ERVL-B3 LTR ERVL 4830 5460 -304 1881 156 24 0 chr5 25420975 25421308 -177664224 + ERVL-B3 LTR ERVL 5417 5757 -7 * 2416 204 43 43 chr5 25421308 25421862 -177663670 + MLT2B3 LTR ERVL 1 554 0 334 259 29 72 chr5 25421865 25422004 -177663528 - L1ME LINE L1 -5445 625 493 502 308 99 58 chr5 25422078 25422494 -177663038 - L1ME LINE L1 -5611 459 27 348 354 59 29 chr5 25422995 25423298 -177662234 - L2 LINE L2 -214 3058 2747 432 314 91 29 chr5 25424571 25424813 -177660719 - MLT1J2 LTR MaLR -2 448 192 2053 125 0 6 chr5 25426538 25426849 -177658683 - AluSc SINE Alu 0 309 1 601 284 16 36 chr5 25426964 25427158 -177658374 + MIR SINE MIR 47 236 -26 21 57 0 0 chr5 25427810 25427845 -177657687 + AT_rich Low_complexity Low_complexity 1 35 0 340 296 126 36 chr5 25428024 25428636 -177656896 + HAL1 LINE L1 796 1462 -1045 2328 70 0 3 chr5 25428732 25429030 -177656502 - AluY SINE Alu -14 297 1 422 238 122 34 chr5 25429824 25429971 -177655561 - MLT1H1 LTR MaLR 0 555 396 2398 67 0 0 chr5 25430057 25430354 -177655178 + AluY SINE Alu 8 304 -7 189 233 27 110 chr5 25430359 25430432 -177655100 - L3b LINE CR1 -235 1348 1282 880 300 65 56 chr5 25431002 25431862 -177653670 + HAL1 LINE L1 1502 2369 -138 271 0 51 0 chr5 25432387 25432426 -177653106 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 490 204 18 9 chr5 25432426 25432539 -177652993 - L1MA9 LINE L1 -37 6275 6162 1044 242 85 24 chr5 25432573 25432866 -177652666 + MER58B DNA MER1_type 5 315 -26 324 0 0 0 chr5 25432867 25432903 -177652629 + (CA)n Simple_repeat Simple_repeat 1 36 0 273 57 0 0 chr5 25434110 25434145 -177651387 + (CA)n Simple_repeat Simple_repeat 2 36 0 270 152 0 0 chr5 25434153 25434199 -177651333 - L2 LINE L2 -1 3312 3267 1818 149 86 6 chr5 25434550 25434886 -177650646 + MER47A DNA MER2_type 2 364 -2 3792 165 27 14 chr5 25435383 25436121 -177649411 - L1PA16 LINE L1 0 6166 5419 2348 252 29 38 chr5 25436131 25437031 -177648501 + L1P LINE L1 2267 3158 -2988 2033 193 94 33 chr5 25437155 25437759 -177647773 - L1M LINE L1 -839 5307 4678 10268 209 50 11 chr5 25437760 25438874 -177646658 - L1PA15-16 LINE L1 -2294 4555 3486 2228 103 7 0 chr5 25438874 25439184 -177646348 - AluSp SINE Alu -1 312 1 10268 209 50 11 chr5 25439184 25441017 -177644515 - L1PA15-16 LINE L1 -3363 3486 3 228 216 0 0 chr5 25441061 25441112 -177644420 + (TATG)n Simple_repeat Simple_repeat 2 52 0 277 287 27 76 chr5 25441631 25441854 -177643678 - HAL1b LINE L1 -820 528 317 6679 76 23 0 chr5 25442810 25443863 -177641669 - L1PA7 LINE L1 0 6154 5093 11392 109 13 0 chr5 25443863 25445539 -177639993 + L1PA7 LINE L1 3393 5090 -1056 316 211 64 11 chr5 25445703 25445810 -177639722 - L1MA7 LINE L1 -109 6203 5982 434 110 0 66 chr5 25445819 25445910 -177639622 + L1MA7 LINE L1 6207 6291 0 182 45 91 0 chr5 25446467 25446511 -177639021 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1327 35 0 41 chr5 25446513 25446684 -177638848 - L1PA3 LINE L1 -3 6152 5989 1558 269 20 18 chr5 25447264 25447766 -177637766 + MLT1D LTR MaLR 3 505 0 1370 128 214 12 chr5 25448443 25448700 -177636832 - AluSg1 SINE Alu 0 309 1 1563 229 6 3 chr5 25448779 25449102 -177636430 - MER89-int LTR ERV1 -1034 5767 5444 718 187 15 0 chr5 25449386 25449520 -177636012 - AluSx SINE Alu 0 312 177 525 268 0 0 chr5 25449520 25449643 -177635889 - AluSx SINE Alu -190 123 1 1563 211 14 16 chr5 25450927 25451347 -177634185 + MLT2B1 LTR ERVL 1 467 -48 633 11 23 11 chr5 25451378 25451465 -177634067 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 330 131 0 33 chr5 25451469 25451530 -177634002 + MLT2B1 LTR ERVL 462 520 0 1657 165 67 20 chr5 25451781 25452186 -177633346 - Charlie1a DNA MER1_type -6 1449 1026 1700 196 24 6 chr5 25452451 25452788 -177632744 - MER61A LTR ERV1 0 343 1 3500 233 28 37 chr5 25452949 25454002 -177631530 - Charlie1a DNA MER1_type -412 1043 1 243 146 0 0 chr5 25454148 25454189 -177631343 + (TAG)n Simple_repeat Simple_repeat 1 41 0 239 324 12 81 chr5 25454309 25454482 -177631050 + LTR67 LTR ERVL 39 199 -358 1950 177 65 76 chr5 25454961 25455487 -177630045 - MLT2B1 LTR ERVL 0 520 1 2489 199 20 18 chr5 25459544 25460037 -177625495 + MER82 DNA MER2_type 1 494 -159 820 271 21 25 chr5 25460175 25460415 -177625117 - MER8 DNA MER2_type 0 239 1 1857 159 52 0 chr5 25460460 25460769 -177624763 + MER7A DNA MER2_type 21 343 -3 934 197 44 19 chr5 25460780 25461034 -177624498 + L1MC4 LINE L1 6774 7021 -787 473 268 127 29 chr5 25461022 25461360 -177624172 + L1MC4 LINE L1 7250 7580 -228 * 990 265 82 16 chr5 25461360 25461726 -177623806 - MLT1B LTR MaLR 0 390 1 473 268 127 29 chr5 25461726 25461875 -177623657 + L1MC4 LINE L1 7580 7713 -95 195 100 0 0 chr5 25461925 25461955 -177623577 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 542 270 212 17 chr5 25461955 25462300 -177623232 + L1MC4 LINE L1 7488 7899 -143 38 81 0 0 chr5 25462357 25462444 -177623088 + AT_rich Low_complexity Low_complexity 1 87 0 332 358 56 39 chr5 25462586 25462818 -177622714 + L1ME LINE L1 5385 5620 -501 3199 161 17 9 chr5 25463078 25463700 -177621832 + MER4D LTR ERV1 266 872 0 432 0 0 0 chr5 25464174 25464222 -177621310 + (TA)n Simple_repeat Simple_repeat 2 49 0 2177 110 0 3 chr5 25464320 25464621 -177620911 - AluSg SINE Alu -10 300 1 1249 166 3 90 chr5 25464701 25464991 -177620541 + L1MA10 LINE L1 6027 6291 -43 550 352 82 40 chr5 25465297 25465894 -177619638 + MLT2F LTR ERVL 8 629 -34 355 271 60 108 chr5 25465994 25466393 -177619139 - L1MEd LINE L1 -4900 1219 840 24 0 0 0 chr5 25466562 25466586 -177618946 + AT_rich Low_complexity Low_complexity 1 24 0 1999 121 3 17 chr5 25466869 25467167 -177618365 - AluSq SINE Alu -19 294 1 370 242 44 11 chr5 25467475 25467566 -177617966 - MER58C DNA MER1_type -3 212 119 23 0 0 0 chr5 25468386 25468409 -177617123 + AT_rich Low_complexity Low_complexity 1 23 0 258 320 30 44 chr5 25468673 25468876 -177616656 + L1ME LINE L1 5536 5735 -386 1830 137 3 44 chr5 25469386 25469707 -177615825 - AluSx SINE Alu -4 308 1 23 33 0 0 chr5 25469885 25469915 -177615617 + AT_rich Low_complexity Low_complexity 1 30 0 1788 115 0 4 chr5 25470314 25470566 -177614966 + AluSq SINE Alu 3 253 -60 312 260 10 0 chr5 25470666 25470762 -177614770 + (TA)n Simple_repeat Simple_repeat 1 97 0 216 0 0 0 chr5 25470778 25470802 -177614730 + (CA)n Simple_repeat Simple_repeat 2 25 0 387 0 0 0 chr5 25470831 25470874 -177614658 + (CA)n Simple_repeat Simple_repeat 2 44 0 202 171 0 49 chr5 25472061 25472102 -177613430 + polypyrimidine Low_complexity Low_complexity 1 39 0 6177 235 45 40 chr5 25472333 25473884 -177611648 - MER89-int LTR ERV1 -270 6531 4970 2747 123 34 5 chr5 25473884 25474299 -177611233 - MSTA LTR MaLR -1 427 1 6177 235 45 40 chr5 25474299 25474379 -177611153 - MER89-int LTR ERV1 -1831 4970 4892 640 306 118 8 chr5 25474440 25474695 -177610837 - MER89-int LTR ERV1 -3866 2935 2653 * 956 244 41 69 chr5 25474667 25475057 -177610475 - MER89-int LTR ERV1 -5546 1255 877 585 242 35 135 chr5 25475273 25475533 -177609999 - MER89-int LTR ERV1 -6088 713 480 2118 216 80 11 chr5 25475533 25475997 -177609535 + MLT1D LTR MaLR 1 496 -9 934 209 52 0 chr5 25476110 25476301 -177609231 - ERVL LTR ERVL -1920 3844 3644 1547 209 23 13 chr5 25476309 25476616 -177608916 - MLT2B3 LTR ERVL -232 322 13 430 272 68 19 chr5 25476631 25476896 -177608636 + L1ME2 LINE L1 1086 1363 -5167 1442 252 26 44 chr5 25476913 25477341 -177608191 + MLT1D LTR MaLR 22 441 -64 271 162 0 29 chr5 25477486 25477554 -177607978 + GA-rich Low_complexity Low_complexity 5 70 0 628 271 60 21 chr5 25477655 25477745 -177607787 + L1ME2 LINE L1 1771 1856 -4684 450 49 0 0 chr5 25477745 25477806 -177607726 + (CA)n Simple_repeat Simple_repeat 2 62 0 628 271 60 21 chr5 25477806 25477999 -177607533 + L1ME2 LINE L1 1856 2065 -4475 22 35 0 0 chr5 25478269 25478298 -177607234 + AT_rich Low_complexity Low_complexity 1 29 0 3425 268 85 50 chr5 25478298 25481128 -177604404 + L1ME2 LINE L1 2535 5464 -1076 739 258 67 48 chr5 25481138 25481406 -177604126 + L1ME2 LINE L1 6286 6558 0 21 0 0 0 chr5 25481627 25481648 -177603884 + AT_rich Low_complexity Low_complexity 1 21 0 247 333 79 0 chr5 25481711 25481825 -177603707 - MIR SINE MIR -1 261 139 1818 160 3 3 chr5 25482107 25482401 -177603131 + AluSx SINE Alu 1 294 -18 482 101 0 13 chr5 25482637 25482716 -177602816 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 1784 156 10 3 chr5 25482828 25483167 -177602365 + AluSx SINE Alu 1 312 0 445 341 109 57 chr5 25484022 25484769 -177600763 - L2 LINE L2 -9 3304 2517 223 186 0 0 chr5 25484901 25484944 -177600588 + A-rich Low_complexity Low_complexity 1 43 0 246 340 50 46 chr5 25485274 25485515 -177600017 + L3 LINE CR1 1136 1377 -200 299 316 26 9 chr5 25485694 25485808 -177599724 + MER94 DNA DNA 18 133 -1 21 36 0 0 chr5 25486358 25486386 -177599146 + AT_rich Low_complexity Low_complexity 1 28 0 32 57 0 0 chr5 25486563 25486616 -177598916 + AT_rich Low_complexity Low_complexity 1 53 0 1073 292 109 81 chr5 25486761 25487621 -177597911 - L2 LINE L2 -5 3308 2429 213 39 0 0 chr5 25487661 25487687 -177597845 + (CAAAAA)n Simple_repeat Simple_repeat 1 26 0 255 31 0 0 chr5 25487740 25487772 -177597760 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2160 44 11 4 chr5 25487789 25488062 -177597470 - L1PA3 LINE L1 -11 6144 5870 315 269 21 0 chr5 25488088 25488181 -177597351 + MER5A DNA MER1_type 16 110 -79 24 0 0 0 chr5 25488470 25488494 -177597038 + AT_rich Low_complexity Low_complexity 1 24 0 206 153 42 42 chr5 25490996 25491068 -177594464 + (TTATA)n Simple_repeat Simple_repeat 3 74 0 301 70 35 0 chr5 25491236 25491293 -177594239 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 189 325 44 62 chr5 25491657 25491817 -177593715 + L2 LINE L2 3005 3161 -152 182 323 199 0 chr5 25492430 25492591 -177592941 + L2 LINE L2 2062 2254 -1060 22 0 0 0 chr5 25492970 25492992 -177592540 + AT_rich Low_complexity Low_complexity 1 22 0 292 268 89 16 chr5 25493091 25493214 -177592318 - LTR67 LTR ERVL -2 555 424 25 31 0 0 chr5 25494072 25494104 -177591428 + AT_rich Low_complexity Low_complexity 1 32 0 1849 230 75 19 chr5 25494339 25494817 -177590715 + MLT1D LTR MaLR 1 505 0 262 227 13 0 chr5 25497395 25497470 -177588062 - MER116 DNA Mariner 0 80 5 225 247 41 52 chr5 25497655 25497752 -177587780 - MLT1I LTR MaLR -194 215 120 210 143 0 0 chr5 25497828 25497863 -177587669 + (CA)n Simple_repeat Simple_repeat 2 36 0 408 229 28 69 chr5 25498321 25498465 -177587067 + MIR SINE MIR 122 259 -3 223 333 105 0 chr5 25498562 25498676 -177586856 - MIR SINE MIR -63 199 74 21 36 0 0 chr5 25499328 25499356 -177586176 + AT_rich Low_complexity Low_complexity 1 28 0 3391 34 2 0 chr5 25499399 25499809 -177585723 + L1PA4 LINE L1 5745 6155 0 345 364 84 34 chr5 25499828 25500125 -177585407 + L3 LINE CR1 170 481 -1096 283 277 51 18 chr5 25500971 25501141 -177584391 - L1MEd LINE L1 -862 1628 1354 414 291 32 67 chr5 25501180 25501493 -177584039 - L1MEd LINE L1 -4953 1166 865 418 337 72 67 chr5 25501517 25501993 -177583539 - L1MEd LINE L1 -5321 798 315 2095 92 3 0 chr5 25501993 25502336 -177583196 - AluSp SINE Alu 0 344 1 418 337 72 67 chr5 25502336 25502617 -177582915 - L1MEd LINE L1 -5804 315 37 262 331 40 33 chr5 25502667 25502818 -177582714 + L3 LINE CR1 610 761 -816 410 354 115 10 chr5 25502949 25503263 -177582269 + L3 LINE CR1 1230 1576 -1 28 0 0 0 chr5 25503554 25503582 -177581950 + AT_rich Low_complexity Low_complexity 1 28 0 374 290 55 59 chr5 25504641 25504896 -177580636 + L2 LINE L2 1821 2074 -1240 215 261 14 43 chr5 25505006 25505075 -177580457 + L2 LINE L2 2544 2610 -704 1667 247 7 51 chr5 25505075 25505525 -177580007 + MLT2B1 LTR ERVL 1 430 -90 1568 156 31 89 chr5 25505514 25505872 -177579660 - MER2 DNA MER2_type -8 337 1 * 317 115 0 0 chr5 25505872 25505929 -177579603 + MLT2C1 LTR ERVL 349 414 0 1377 148 63 11 chr5 25506582 25506866 -177578666 + L1MA8 LINE L1 5973 6271 -20 23 78 0 0 chr5 25506866 25506917 -177578615 + AT_rich Low_complexity Low_complexity 1 51 0 2047 243 20 45 chr5 25506917 25507515 -177578017 + MER92B LTR ERV1 54 636 0 27 62 0 0 chr5 25507826 25507874 -177577658 + AT_rich Low_complexity Low_complexity 1 48 0 25 0 0 0 chr5 25508489 25508514 -177577018 + AT_rich Low_complexity Low_complexity 1 25 0 316 307 37 16 chr5 25508848 25508998 -177576534 + MIR SINE MIR 36 187 -65 1017 217 175 29 chr5 25509632 25509946 -177575586 - MLT1A2 LTR MaLR -11 363 4 1614 239 115 72 chr5 25510508 25511203 -177574329 + MER50 LTR ERV1 10 734 0 247 294 8 8 chr5 25511278 25511404 -177574128 + (TA)n Simple_repeat Simple_repeat 2 127 0 21 0 0 0 chr5 25511410 25511431 -177574101 + AT_rich Low_complexity Low_complexity 1 21 0 2056 133 0 3 chr5 25511767 25512068 -177573464 + AluSg SINE Alu 1 300 -10 26696 76 9 7 chr5 25512168 25515895 -177569637 - L1P LINE L1 -804 5342 1607 26 30 0 0 chr5 25516432 25516465 -177569067 + AT_rich Low_complexity Low_complexity 1 33 0 37 39 0 0 chr5 25516897 25516948 -177568584 + AT_rich Low_complexity Low_complexity 1 51 0 30 27 0 0 chr5 25517043 25517080 -177568452 + AT_rich Low_complexity Low_complexity 1 37 0 1226 321 106 12 chr5 25517819 25518443 -177567089 + L2 LINE L2 2403 2966 -347 1224 198 54 124 chr5 25518443 25518832 -177566700 - MLT1D LTR MaLR 0 505 90 183 42 0 0 chr5 25518832 25518856 -177566676 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1224 198 54 124 chr5 25518856 25518895 -177566637 - MLT1D LTR MaLR -415 90 50 2262 103 0 3 chr5 25518895 25519206 -177566326 - AluSg SINE Alu 0 310 1 1224 198 54 124 chr5 25519206 25519316 -177566216 - MLT1D LTR MaLR -455 50 4 1226 321 106 12 chr5 25519316 25519522 -177566010 + L2 LINE L2 2966 3313 0 22 0 0 0 chr5 25519745 25519767 -177565765 + AT_rich Low_complexity Low_complexity 1 22 0 722 181 0 8 chr5 25519820 25519947 -177565585 + FLAM_C SINE Alu 1 126 -7 244 249 122 19 chr5 25522235 25522397 -177563135 - L1ME LINE L1 -248 5873 5681 193 338 97 72 chr5 25522973 25523898 -177561634 + L2 LINE L2 1729 2676 -638 217 250 0 0 chr5 25524017 25524069 -177561463 + (TTCA)n Simple_repeat Simple_repeat 3 54 0 195 226 38 19 chr5 25524325 25524378 -177561154 - L2 LINE L2 -340 2974 2921 2284 60 0 23 chr5 25524768 25525068 -177560464 - AluY SINE Alu -18 293 1 181 268 0 0 chr5 25525292 25525333 -177560199 + L2 LINE L2 3193 3233 -39 410 307 159 0 chr5 25525472 25525661 -177559871 - L3 LINE CR1 -53 1524 1306 1165 340 176 12 chr5 25525811 25526627 -177558905 + L2 LINE L2 531 1480 -1834 187 156 16 125 chr5 25526629 25526693 -177558839 + L2 LINE L2 2404 2460 -854 832 201 179 45 chr5 25526732 25527041 -177558491 + MER83C LTR ERV1 1 327 -46 21 36 0 0 chr5 25527701 25527729 -177557803 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr5 25529395 25529416 -177556116 + AT_rich Low_complexity Low_complexity 1 21 0 1248 63 6 0 chr5 25530477 25530672 -177554860 + AluY SINE Alu 134 329 0 21 71 0 0 chr5 25530675 25530717 -177554815 + AT_rich Low_complexity Low_complexity 1 42 0 4052 208 62 20 chr5 25531574 25533086 -177552446 + L1MB2 LINE L1 4589 6171 0 1933 176 77 15 chr5 25533120 25533324 -177552208 - MSTA LTR MaLR 0 428 238 258 32 0 0 chr5 25533324 25533355 -177552177 + (GA)n Simple_repeat Simple_repeat 2 32 0 1933 176 77 15 chr5 25533355 25533553 -177551979 - MSTA LTR MaLR -190 238 1 24 53 0 0 chr5 25534098 25534136 -177551396 + AT_rich Low_complexity Low_complexity 1 38 0 537 314 35 9 chr5 25535139 25535368 -177550164 - L1ME1 LINE L1 -4 6162 5928 2138 108 7 3 chr5 25535619 25535915 -177549617 + AluSx SINE Alu 1 297 -15 785 272 75 0 chr5 25536450 25536729 -177548803 - L1ME3A LINE L1 -12 6158 5859 266 186 0 0 chr5 25536787 25536830 -177548702 - HERVK3 LTR ERVK -7200 43 1 2042 170 66 24 chr5 25536830 25537241 -177548291 - LTR3 LTR ERVK 0 432 5 310 243 19 65 chr5 25537252 25537359 -177548173 - L1ME3A LINE L1 -504 5666 5565 594 171 0 43 chr5 25538185 25538302 -177547230 - AluJb SINE Alu -23 289 178 180 0 0 0 chr5 25538372 25538392 -177547140 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 238 397 17 9 chr5 25539315 25539431 -177546101 + MIR3 SINE MIR 91 207 -1 25 51 0 0 chr5 25540519 25540558 -177544974 + AT_rich Low_complexity Low_complexity 1 39 0 405 335 21 21 chr5 25541317 25541508 -177544024 + L2 LINE L2 3119 3309 -4 618 281 23 0 chr5 25541789 25541960 -177543572 - MER45A DNA AcHobo -3 175 1 233 228 0 18 chr5 25542018 25542075 -177543457 + CT-rich Low_complexity Low_complexity 3 58 0 242 333 105 35 chr5 25542690 25542861 -177542671 - MER5A DNA MER1_type 0 189 7 2556 87 29 3 chr5 25544018 25544396 -177541136 + L1PA13 LINE L1 5771 6158 -5 742 277 128 34 chr5 25544794 25545115 -177540417 + LTR40a LTR ERVL 169 519 0 23 0 0 0 chr5 25545213 25545236 -177540296 + AT_rich Low_complexity Low_complexity 1 23 0 2546 171 96 22 chr5 25545749 25546304 -177539228 - LTR48 LTR ERV1 0 787 192 257 154 0 0 chr5 25546304 25546343 -177539189 - HERVK3 LTR ERVK -7204 39 1 715 200 0 35 chr5 25546349 25546519 -177539013 - LTR3 LTR ERVK -2 430 267 9217 142 18 37 chr5 25546525 25548152 -177537380 + L1P LINE L1 11 1607 -4539 723 199 0 0 chr5 25549665 25549796 -177535736 - FLAM_C SINE Alu -12 131 1 369 388 135 16 chr5 25550006 25550318 -177535214 + L1MEc LINE L1 22 370 -6026 1529 80 9 0 chr5 25550809 25551021 -177534511 - L1PA7 LINE L1 -1 6153 5940 5207 54 15 4 chr5 25551022 25551827 -177533705 + L1PA7 LINE L1 5119 5926 -228 512 292 63 22 chr5 25551846 25552213 -177533319 + L1MEc LINE L1 839 1220 -4985 328 238 173 42 chr5 25552529 25552697 -177532835 + L1MEc LINE L1 1368 1557 -4660 837 303 67 24 chr5 25552706 25552770 -177532762 + L1MEc LINE L1 3158 3218 -2997 1784 166 3 27 chr5 25552770 25553071 -177532461 + AluJb SINE Alu 1 294 -18 180 0 0 0 chr5 25553072 25553092 -177532440 + (AAATG)n Simple_repeat Simple_repeat 1 20 0 837 303 67 24 chr5 25553092 25553606 -177531926 + L1MEc LINE L1 3217 3763 -2452 1632 164 0 10 chr5 25554023 25554333 -177531199 + L1MA7 LINE L1 5985 6291 0 21 0 0 0 chr5 25554581 25554602 -177530930 + AT_rich Low_complexity Low_complexity 1 21 0 1722 132 6 89 chr5 25554942 25555267 -177530265 + AluSx SINE Alu 1 298 -14 23 78 0 0 chr5 25555362 25555413 -177530119 + AT_rich Low_complexity Low_complexity 1 51 0 2114 105 25 0 chr5 25555751 25556037 -177529495 + AluSx SINE Alu 9 301 -11 25 0 0 0 chr5 25556063 25556088 -177529444 + AT_rich Low_complexity Low_complexity 1 25 0 222 222 22 0 chr5 25556940 25556985 -177528547 + L2 LINE L2 3215 3260 -12 23 0 0 0 chr5 25557087 25557110 -177528422 + AT_rich Low_complexity Low_complexity 1 23 0 2296 88 0 32 chr5 25557116 25557424 -177528108 + AluSg1 SINE Alu 4 301 -8 330 343 29 41 chr5 25557521 25557763 -177527769 + HAL1b LINE L1 446 684 -664 21 71 0 0 chr5 25557858 25557900 -177527632 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr5 25559167 25559198 -177526334 + AT_rich Low_complexity Low_complexity 1 31 0 186 133 0 0 chr5 25560144 25560174 -177525358 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 23 0 0 0 chr5 25560711 25560734 -177524798 + AT_rich Low_complexity Low_complexity 1 23 0 1873 133 22 4 chr5 25561058 25561388 -177524144 - AluSq SINE Alu 0 335 1 1398 198 88 18 chr5 25561502 25561845 -177523687 + MLT1A2 LTR MaLR 1 367 -7 957 231 69 26 chr5 25561992 25562338 -177523194 - MLT1A1 LTR MaLR -4 361 1 23 68 0 0 chr5 25562668 25562712 -177522820 + AT_rich Low_complexity Low_complexity 1 44 0 186 133 0 0 chr5 25564153 25564183 -177521349 + (CATATA)n Simple_repeat Simple_repeat 4 33 0 24 53 0 0 chr5 25564815 25564853 -177520679 + AT_rich Low_complexity Low_complexity 1 38 0 234 118 0 118 chr5 25564995 25565046 -177520486 + MER47A DNA MER2_type 81 125 -241 1444 159 12 52 chr5 25565052 25565240 -177520292 - L1MA5 LINE L1 -2 6298 6127 1900 163 0 0 chr5 25565240 25565535 -177519997 - AluSx SINE Alu -17 295 1 1444 159 12 52 chr5 25565535 25565673 -177519859 - L1MA5 LINE L1 -173 6127 5985 1699 127 0 4 chr5 25565673 25565910 -177519622 - AluSx SINE Alu -76 236 1 1704 135 52 1 chr5 25565911 25566287 -177519245 - L1MA5 LINE L1 -719 5581 5189 1440 181 4 8 chr5 25566287 25566553 -177518979 + MER47A DNA MER2_type 102 366 0 2002 135 7 0 chr5 25566740 25567022 -177518510 + AluSc SINE Alu 1 284 -25 5035 44 24 2 chr5 25569479 25570110 -177515422 + L1PA4 LINE L1 5511 6155 0 11648 164 99 5 chr5 25570532 25571006 -177514526 + L1MA2 LINE L1 1167 1595 -5970 183 42 0 0 chr5 25571006 25571030 -177514502 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 11648 164 99 5 chr5 25571030 25572881 -177512651 + L1MA2 LINE L1 1595 3711 -3854 6221 192 19 16 chr5 25572874 25575249 -177510283 + L1MA2 LINE L1 5344 7723 0 * 25 31 0 0 chr5 25575367 25575399 -177510133 + AT_rich Low_complexity Low_complexity 1 32 0 12025 165 81 15 chr5 25576428 25577695 -177507837 - Tigger1 DNA MER2_type 0 2418 1236 2402 132 65 7 chr5 25577695 25578098 -177507434 + MSTA LTR MaLR 3 428 0 12025 165 81 15 chr5 25578098 25579097 -177506435 - Tigger1 DNA MER2_type -1182 1236 2 417 354 0 0 chr5 25579112 25579239 -177506293 + L2 LINE L2 3187 3313 0 348 176 0 0 chr5 25579614 25579682 -177505850 + CT-rich Low_complexity Low_complexity 3 70 0 283 359 28 37 chr5 25579696 25579913 -177505619 - MLT1K LTR MaLR -180 408 194 411 390 10 5 chr5 25580042 25580247 -177505285 + L2 LINE L2 2857 3062 -210 837 206 6 0 chr5 25580371 25580551 -177504981 + L1 LINE L1 5167 5347 -799 298 270 14 0 chr5 25580751 25580825 -177504707 - MER58 DNA MER1_type -13 2407 128 31 68 0 0 chr5 25581782 25581841 -177503691 + AT_rich Low_complexity Low_complexity 1 59 0 367 259 145 23 chr5 25581843 25581974 -177503558 - MIR3 SINE MIR -45 163 17 596 233 90 0 chr5 25582075 25582208 -177503324 - FRAM SINE Alu -31 145 1 5491 219 9 8 chr5 25582268 25584001 -177501531 - L1MA2 LINE L1 -1 7722 5983 1664 170 181 6 chr5 25584001 25584365 -177501167 + MSTA LTR MaLR 1 428 0 5491 219 9 8 chr5 25584365 25584600 -177500932 - L1MA2 LINE L1 -1740 5983 5750 6494 173 106 66 chr5 25584601 25586200 -177499332 + MER52A LTR ERV1 1 1753 -2 5107 189 14 13 chr5 25586203 25587248 -177498284 - L1MA2 LINE L1 -1814 5751 4706 2282 206 9 10 chr5 25587254 25587828 -177497704 - L1MA2 LINE L1 -3457 4108 3534 556 254 56 106 chr5 25587828 25588202 -177497330 - MLT1E3 LTR MaLR -139 487 136 872 274 53 51 chr5 25588204 25588638 -177496894 - MLT2B1 LTR ERVL 0 520 86 249 244 63 55 chr5 25588621 25588748 -177496784 - MLT1K LTR MaLR -428 226 99 * 520 174 0 0 chr5 25588913 25589005 -177496527 - MSTA LTR MaLR 0 428 337 584 234 0 0 chr5 25589012 25589123 -177496409 - MSTA LTR MaLR -317 111 1 274 108 31 31 chr5 25589123 25589188 -177496344 + (CATAT)n Simple_repeat Simple_repeat 3 67 0 2625 164 36 7 chr5 25589188 25589634 -177495898 - MSTA-int LTR MaLR 0 1651 1193 1221 149 5 0 chr5 25589634 25589828 -177495704 - MSTA-int LTR MaLR -568 1012 818 687 119 0 0 chr5 25589827 25589928 -177495604 - MSTA-int LTR MaLR -1357 223 123 * 617 158 0 0 chr5 25589933 25590028 -177495504 - THE1C LTR MaLR -280 95 1 307 192 26 0 chr5 25590124 25590202 -177495330 - L1PB4 LINE L1 -3 6153 6074 1601 200 45 79 chr5 25590305 25590774 -177494758 - MLT1C LTR MaLR -10 457 5 542 347 28 14 chr5 25590859 25591075 -177494457 + MIR SINE MIR 44 262 0 197 381 9 0 chr5 25591341 25591446 -177494086 + L2 LINE L2 2112 2217 -1097 485 286 179 30 chr5 25591482 25591744 -177493788 + L1PB4 LINE L1 150 450 -6399 333 394 89 25 chr5 25591759 25591962 -177493570 + L1PB4 LINE L1 572 787 -6062 356 387 84 31 chr5 25592267 25592458 -177493074 + L1PB4 LINE L1 587 787 -6062 7633 238 61 17 chr5 25592892 25594077 -177491455 + L1PB4 LINE L1 1082 2214 -4634 2202 103 10 0 chr5 25594077 25594378 -177491154 + AluY SINE Alu 1 304 -7 7633 238 61 17 chr5 25594378 25597171 -177488361 + L1PB4 LINE L1 2214 5235 -1613 240 98 39 39 chr5 25597173 25597224 -177488308 + FAM SINE Alu 123 173 -6 387 59 294 15 chr5 25597259 25597299 -177488233 - MLT2A1 LTR ERVL 0 444 416 733 11 21 0 chr5 25597299 25597393 -177488139 + (TA)n Simple_repeat Simple_repeat 2 97 0 387 59 294 15 chr5 25597393 25597420 -177488112 - MLT2A1 LTR ERVL -28 416 358 2882 92 0 0 chr5 25597466 25597846 -177487686 - MLT2A1 LTR ERVL -64 380 1 3419 189 36 55 chr5 25597846 25599454 -177486078 + L1PB4 LINE L1 5263 6838 -20 22 0 0 0 chr5 25599454 25599476 -177486056 + AT_rich Low_complexity Low_complexity 1 22 0 6274 80 10 5 chr5 25599476 25600990 -177484542 - L1PA7 LINE L1 -5 6149 4624 15564 107 11 7 chr5 25600990 25603891 -177481641 + L1P LINE L1 1320 4238 -1908 4171 91 39 5 chr5 25603895 25604480 -177481052 + LTR14B LTR ERVK 4 608 0 5555 66 3 0 chr5 25604480 25605177 -177480355 + HERVK14 LTR ERVK 1 699 -5246 2973 127 51 2 chr5 25605212 25605661 -177479871 + HERVK14 LTR ERVK 1706 2176 -3769 180 246 0 0 chr5 25606386 25606455 -177479077 + GA-rich Low_complexity Low_complexity 2 70 0 250 62 0 0 chr5 25606463 25606495 -177479037 + HERVK3 LTR ERVK 187 218 -7025 949 83 0 0 chr5 25606647 25606768 -177478764 + HERVK3 LTR ERVK 4280 4400 -1545 * 3406 68 23 1 chr5 25606767 25607430 -177478102 + HERVK3 LTR ERVK 5013 5759 -186 318 222 0 18 chr5 25607430 25607505 -177478027 + MER41C LTR ERV1 1 61 -493 774 37 56 28 chr5 25607505 25607613 -177477919 + HERVK14 LTR ERVK 5835 5945 0 3939 98 43 5 chr5 25607617 25608200 -177477332 + LTR14B LTR ERVK 4 608 0 2294 93 14 14 chr5 25608200 25608555 -177476977 + L1P LINE L1 4233 4587 -1559 284 128 21 0 chr5 25609490 25609537 -177475995 - L1PB4 LINE L1 -60 6096 6049 243 369 35 28 chr5 25609610 25609865 -177475667 - L1ME LINE L1 -5712 358 102 231 88 0 0 chr5 25610220 25610254 -177475278 + (CA)n Simple_repeat Simple_repeat 1 34 0 258 339 47 47 chr5 25610594 25610765 -177474767 + MIR SINE MIR 6 176 -86 1495 182 64 33 chr5 25610983 25611313 -177474219 - MER46B DNA MER2_type 0 236 22 2070 120 19 3 chr5 25611333 25611641 -177473891 - AluSp SINE Alu 0 313 1 21 0 0 0 chr5 25612908 25612929 -177472603 + AT_rich Low_complexity Low_complexity 1 21 0 34 24 0 0 chr5 25612962 25613003 -177472529 + AT_rich Low_complexity Low_complexity 1 41 0 427 318 108 0 chr5 25613136 25613312 -177472220 - MIR SINE MIR -65 197 3 734 244 6 0 chr5 25613833 25613997 -177471535 + MER2 DNA MER2_type 1 165 -180 222 204 0 0 chr5 25614236 25614285 -177471247 + (CA)n Simple_repeat Simple_repeat 2 50 0 2252 193 27 2 chr5 25614408 25614822 -177470710 - MSTB LTR MaLR -2 424 1 22 56 0 0 chr5 25615246 25615282 -177470250 + AT_rich Low_complexity Low_complexity 1 36 0 1704 188 10 0 chr5 25615585 25615878 -177469654 - AluSx SINE Alu -16 296 1 362 264 11 0 chr5 25616118 25616205 -177469327 - MIR SINE MIR -97 165 78 1981 146 3 0 chr5 25617187 25617488 -177468044 + AluSx SINE Alu 1 302 -10 206 0 69 0 chr5 25617555 25617584 -177467948 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 221 149 43 0 chr5 25618372 25618419 -177467113 + GA-rich Low_complexity Low_complexity 3 51 0 2618 55 0 0 chr5 25618738 25619047 -177466485 - AluY SINE Alu -2 309 1 6566 68 3 10 chr5 25619355 25620248 -177465284 + L1PA6 LINE L1 5268 6154 0 1080 234 94 12 chr5 25620249 25620505 -177465027 - LTR3 LTR ERVK -151 281 5 7139 98 3 1 chr5 25620509 25621487 -177464045 - HERVK3 LTR ERVK 0 7243 6264 4338 127 11 1 chr5 25621482 25622150 -177463382 - HERVK3 LTR ERVK -1885 5358 4685 * 1364 95 0 0 chr5 25622149 25622338 -177463194 - HERVK3 LTR ERVK -2936 4307 4119 * 15136 127 29 8 chr5 25622325 25624602 -177460930 - HERVK3 LTR ERVK -4333 2910 579 2122 113 0 28 chr5 25624602 25624920 -177460612 - AluSc SINE Alu 0 309 1 15136 127 29 8 chr5 25624920 25625030 -177460502 - HERVK3 LTR ERVK -6664 579 473 1168 193 88 40 chr5 25625030 25625304 -177460228 - LTR3 LTR ERVK -141 291 5 638 174 28 69 chr5 25625299 25625476 -177460056 - LTR48 LTR ERV1 -591 53 3 * 1903 125 4 7 chr5 25625915 25626196 -177459336 + AluSg SINE Alu 1 280 -30 21 0 0 0 chr5 25627547 25627568 -177457964 + AT_rich Low_complexity Low_complexity 1 21 0 476 291 118 17 chr5 25627771 25628008 -177457524 + MLT1J LTR MaLR 12 272 -239 23 0 0 0 chr5 25628386 25628409 -177457123 + AT_rich Low_complexity Low_complexity 1 23 0 207 186 0 0 chr5 25629145 25629188 -177456344 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 29 84 0 0 chr5 25629471 25629542 -177455990 + AT_rich Low_complexity Low_complexity 1 71 0 246 315 11 0 chr5 25634645 25634734 -177450798 + CT-rich Low_complexity Low_complexity 1 90 0 24 32 0 0 chr5 25635934 25635965 -177449567 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr5 25636733 25636759 -177448773 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr5 25637473 25637502 -177448030 + AT_rich Low_complexity Low_complexity 1 29 0 258 259 0 0 chr5 25637690 25637748 -177447784 - L2 LINE L2 0 3313 3256 605 87 0 0 chr5 25638287 25638379 -177447153 - L1PA15 LINE L1 -2 6163 6072 707 250 91 14 chr5 25638638 25638846 -177446686 + MIR SINE MIR 19 242 -20 23 0 0 0 chr5 25638967 25638990 -177446542 + AT_rich Low_complexity Low_complexity 1 23 0 1566 168 6 84 chr5 25640113 25640447 -177445085 - MER1B DNA MER1_type 0 339 32 734 224 23 74 chr5 25640455 25640793 -177444739 - L1MC/D LINE L1 -743 5403 5220 2055 126 13 3 chr5 25640793 25641103 -177444429 - AluSq SINE Alu 0 313 1 734 224 23 74 chr5 25641103 25641238 -177444294 - L1MC/D LINE L1 -926 5220 5080 242 29 29 0 chr5 25641473 25641508 -177444024 + (TC)n Simple_repeat Simple_repeat 2 37 0 251 276 84 49 chr5 25641642 25641815 -177443717 - MLT1F1 LTR MaLR -365 225 45 272 291 77 8 chr5 25641815 25641932 -177443600 - MLT1G1 LTR MaLR -470 125 1 775 280 54 33 chr5 25641956 25642474 -177443058 + HAL1 LINE L1 1045 1573 -934 263 299 103 39 chr5 25642560 25642841 -177442691 + HAL1 LINE L1 1761 2059 -448 25 31 0 0 chr5 25643165 25643197 -177442335 + AT_rich Low_complexity Low_complexity 1 32 0 284 307 52 16 chr5 25643971 25644222 -177441310 + L1M4 LINE L1 5016 5275 -871 737 354 114 13 chr5 25644327 25644870 -177440662 - L2 LINE L2 -295 2977 2383 272 256 39 0 chr5 25645179 25645257 -177440275 - L1ME3A LINE L1 -4 6166 6086 427 282 79 71 chr5 25645373 25645622 -177439910 - L1MEc LINE L1 -4579 1817 1571 2330 100 0 0 chr5 25645622 25645921 -177439611 + AluSq SINE Alu 1 299 -14 427 282 79 71 chr5 25645921 25646581 -177438951 - L1MEc LINE L1 -4825 1571 901 1734 197 16 94 chr5 25646769 25647052 -177438480 + MLT2C2 LTR ERVL 3 242 -222 1983 131 27 3 chr5 25647052 25647350 -177438182 + AluSx SINE Alu 1 305 -7 1734 197 16 94 chr5 25647350 25647502 -177438030 + MLT2C2 LTR ERVL 242 404 -60 318 294 22 7 chr5 25648787 25648923 -177436609 + (TA)n Simple_repeat Simple_repeat 1 138 0 189 0 0 0 chr5 25649270 25649291 -177436241 + (CA)n Simple_repeat Simple_repeat 2 22 0 988 205 81 77 chr5 25649642 25649939 -177435593 - AluJo SINE Alu -4 298 1 2177 112 0 0 chr5 25651163 25651459 -177434073 - AluSc SINE Alu -13 296 1 1947 186 5 22 chr5 25652491 25652827 -177432705 + MLT1A1 LTR MaLR 1 332 -33 1870 155 77 0 chr5 25652827 25653150 -177432382 - MER7A DNA MER2_type 0 346 1 1947 186 5 22 chr5 25653150 25653183 -177432349 + MLT1A1 LTR MaLR 332 364 -1 682 218 32 110 chr5 25653416 25653758 -177431774 - L1ME3A LINE L1 -743 5403 5224 2084 115 13 3 chr5 25653758 25654062 -177431470 - AluSq SINE Alu -6 307 1 682 218 32 110 chr5 25654062 25654197 -177431335 - L1ME3A LINE L1 -922 5224 5080 1772 244 61 56 chr5 25654215 25654281 -177431251 - L1ME3A LINE L1 -1687 4459 4395 1525 201 10 3 chr5 25654281 25654575 -177430957 - AluJo SINE Alu -5 307 12 1772 244 61 56 chr5 25654575 25655365 -177430167 - L1ME3A LINE L1 -1751 4395 3599 289 263 61 20 chr5 25657276 25657375 -177428157 + MIR SINE MIR 35 137 -71 896 198 71 45 chr5 25657453 25657721 -177427811 - ORSL DNA AcHobo 0 275 1 225 94 0 0 chr5 25658029 25658061 -177427471 + (CA)n Simple_repeat Simple_repeat 2 33 0 209 346 0 26 chr5 25658086 25658164 -177427368 + L2 LINE L2 3016 3091 -181 27 0 0 0 chr5 25660691 25660718 -177424814 + AT_rich Low_complexity Low_complexity 1 27 0 304 250 76 22 chr5 25661309 25661401 -177424131 + MER5A DNA MER1_type 10 106 -83 23 33 0 0 chr5 25661534 25661564 -177423968 + AT_rich Low_complexity Low_complexity 1 30 0 269 256 104 76 chr5 25663431 25663681 -177421851 - MER20B DNA MER1_type -8 775 519 186 103 0 0 chr5 25663691 25663720 -177421812 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 251 355 11 0 chr5 25663720 25663813 -177421719 - L2 LINE L2 -15 3298 3205 198 0 0 0 chr5 25663843 25663865 -177421667 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 704 266 73 68 chr5 25663899 25664397 -177421135 - L2 LINE L2 -279 3034 2531 243 0 0 0 chr5 25664523 25664550 -177420982 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 183 42 0 0 chr5 25665012 25665036 -177420496 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 207 100 0 0 chr5 25665719 25665749 -177419783 + (TA)n Simple_repeat Simple_repeat 2 31 0 226 382 99 8 chr5 25668081 25668212 -177417320 + MIR3 SINE MIR 6 148 -60 26 88 0 0 chr5 25668303 25668371 -177417161 + AT_rich Low_complexity Low_complexity 1 68 0 181 284 171 0 chr5 25669485 25669573 -177415959 - L2 LINE L2 0 3272 3170 2542 40 0 0 chr5 25671509 25671812 -177413720 + AluY SINE Alu 1 303 -8 185 94 31 0 chr5 25671823 25671855 -177413677 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2171 110 0 16 chr5 25671910 25672218 -177413314 + AluSq SINE Alu 3 305 -8 2125 100 0 4 chr5 25672929 25673210 -177412322 + AluSq SINE Alu 1 280 -33 1727 178 7 3 chr5 25673507 25673805 -177411727 + AluJo SINE Alu 1 299 -13 2004 119 3 10 chr5 25673884 25674154 -177411378 + AluSc SINE Alu 1 270 -39 207 0 0 0 chr5 25674154 25674177 -177411355 + (TC)n Simple_repeat Simple_repeat 1 23 0 2004 119 3 10 chr5 25674177 25674217 -177411315 + AluSc SINE Alu 270 309 0 2235 105 0 0 chr5 25674710 25675014 -177410518 + AluSg1 SINE Alu 1 304 -5 21 0 0 0 chr5 25675194 25675215 -177410317 + AT_rich Low_complexity Low_complexity 1 21 0 362 306 142 27 chr5 25675429 25675951 -177409581 - L1MC4a LINE L1 -1914 5894 5313 22 0 0 0 chr5 25676007 25676029 -177409503 + AT_rich Low_complexity Low_complexity 1 22 0 226 236 70 16 chr5 25676292 25676394 -177409138 - L1MC/D LINE L1 -559 5603 5517 783 285 46 54 chr5 25676759 25677248 -177408284 - L2 LINE L2 -26 3287 2799 1924 221 88 7 chr5 25677248 25677713 -177407819 + MLT1D LTR MaLR 1 503 -2 783 285 46 54 chr5 25677713 25677810 -177407722 - L2 LINE L2 -514 2799 2703 476 78 16 0 chr5 25677810 25677896 -177407636 + L1PA12 LINE L1 6031 6120 -41 316 375 11 11 chr5 25677919 25678103 -177407429 + L1M4 LINE L1 3543 3726 -2420 671 76 0 0 chr5 25678140 25678232 -177407300 + L1PA13 LINE L1 6068 6159 -4 905 310 165 36 chr5 25678257 25678986 -177406546 - L2 LINE L2 -783 2531 1709 249 146 0 0 chr5 25678986 25679034 -177406498 + (TA)n Simple_repeat Simple_repeat 2 49 0 350 310 66 40 chr5 25679035 25679639 -177405893 - L1MEc LINE L1 -1984 4231 3612 2925 234 93 25 chr5 25680963 25681932 -177403600 - L1MC2 LINE L1 0 7766 6137 1887 127 34 0 chr5 25682889 25683180 -177402352 - AluSq SINE Alu 0 313 13 376 265 80 10 chr5 25683319 25683519 -177402013 - L1MEc LINE L1 -4113 2283 2070 2067 217 67 22 chr5 25683552 25684086 -177401446 - Tigger6a DNA MER2_type -423 660 103 2356 45 0 7 chr5 25684086 25684374 -177401158 + AluY SINE Alu 1 286 -25 287 206 46 15 chr5 25684374 25684505 -177401027 + (TA)n Simple_repeat Simple_repeat 2 136 0 2525 46 0 0 chr5 25684548 25684852 -177400680 - AluY SINE Alu -7 304 1 231 204 0 0 chr5 25685288 25685342 -177400190 + T-rich Low_complexity Low_complexity 1 54 0 804 228 46 20 chr5 25686342 25686539 -177398993 - MER63A DNA MER1_type -2 208 7 183 80 0 0 chr5 25687453 25687478 -177398054 + (TA)n Simple_repeat Simple_repeat 1 25 0 394 328 109 0 chr5 25687539 25687722 -177397810 - LTR16A LTR ERVL -52 398 196 2078 97 7 10 chr5 25688064 25688363 -177397169 + AluSx SINE Alu 1 298 -14 30 0 0 0 chr5 25688463 25688493 -177397039 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr5 25688510 25688531 -177397001 + AT_rich Low_complexity Low_complexity 1 21 0 2764 176 45 35 chr5 25688714 25689004 -177396528 - L1MB4 LINE L1 -2 6178 5892 2046 129 0 0 chr5 25689004 25689298 -177396234 - AluSg SINE Alu -14 296 3 2764 176 45 35 chr5 25689298 25689827 -177395705 - L1MB4 LINE L1 -288 5892 5300 2092 254 82 44 chr5 25690336 25691782 -177393750 - L1ME2 LINE L1 -10 6154 4764 2021 142 3 0 chr5 25691782 25692085 -177393447 + AluSx SINE Alu 1 304 -8 2092 254 82 44 chr5 25692085 25692143 -177393389 - L1ME2 LINE L1 -1400 4764 4710 1181 212 53 70 chr5 25692143 25692335 -177393197 - MLT1B LTR MaLR 0 390 196 210 91 0 0 chr5 25692335 25692368 -177393164 + (TG)n Simple_repeat Simple_repeat 1 33 0 1181 212 53 70 chr5 25692368 25692572 -177392960 - MLT1B LTR MaLR -194 196 1 2092 254 82 44 chr5 25692572 25692965 -177392567 - L1ME2 LINE L1 -1454 4710 4147 450 306 49 0 chr5 25693345 25693528 -177392004 + L1MC4 LINE L1 6458 6649 -1393 1081 250 105 10 chr5 25693896 25694280 -177391252 + L1MC4 LINE L1 6664 7052 -943 960 297 94 41 chr5 25694287 25694324 -177391208 + L1MC4 LINE L1 7239 7273 -769 2080 54 12 75 chr5 25694324 25694656 -177390876 - AluY SINE Alu 0 311 1 960 297 94 41 chr5 25694656 25695247 -177390285 + L1MC4 LINE L1 7273 7900 -142 331 323 21 27 chr5 25695321 25695507 -177390025 - L1ME2 LINE L1 -1955 4191 4007 208 357 0 0 chr5 25695615 25695693 -177389839 + MIR SINE MIR 54 132 -76 24 0 0 0 chr5 25696751 25696775 -177388757 + AT_rich Low_complexity Low_complexity 1 24 0 444 314 78 25 chr5 25696996 25697200 -177388332 - MIR SINE MIR 0 262 48 193 289 55 55 chr5 25697449 25697577 -177387955 + MIR SINE MIR 89 216 -46 459 0 0 0 chr5 25697873 25697924 -177387608 + (CA)n Simple_repeat Simple_repeat 2 52 0 24 67 0 0 chr5 25698918 25698963 -177386569 + AT_rich Low_complexity Low_complexity 1 45 0 27 81 0 0 chr5 25699585 25699647 -177385885 + AT_rich Low_complexity Low_complexity 1 62 0 26 50 0 0 chr5 25701359 25701399 -177384133 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr5 25701551 25701573 -177383959 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr5 25701685 25701706 -177383826 + AT_rich Low_complexity Low_complexity 1 21 0 435 313 62 35 chr5 25702507 25702734 -177382798 + LTR40a LTR ERVL 245 477 -42 21 36 0 0 chr5 25703217 25703245 -177382287 + AT_rich Low_complexity Low_complexity 1 28 0 300 268 29 36 chr5 25703438 25703576 -177381956 + HAL1 LINE L1 1486 1622 -885 423 0 0 0 chr5 25703604 25703651 -177381881 + (CA)n Simple_repeat Simple_repeat 1 47 0 29 0 0 0 chr5 25706570 25706599 -177378933 + AT_rich Low_complexity Low_complexity 1 29 0 339 381 34 53 chr5 25707138 25707403 -177378129 + MER115 DNA AcHobo 68 327 -366 567 264 50 0 chr5 25707616 25707775 -177377757 + MER115 DNA AcHobo 519 685 -8 209 189 0 0 chr5 25710935 25710972 -177374560 + A-rich Low_complexity Low_complexity 4 40 0 1390 138 5 5 chr5 25712629 25712881 -177372651 - AluSg/x SINE Alu 0 327 76 241 295 9 36 chr5 25713113 25713225 -177372307 - MIR SINE MIR -50 212 104 505 186 99 88 chr5 25713225 25713488 -177372044 - MER33 DNA MER1_type -58 266 1 228 345 86 36 chr5 25713491 25713711 -177371821 + MIR SINE MIR 27 257 -5 183 80 0 0 chr5 25713723 25713748 -177371784 + (TTA)n Simple_repeat Simple_repeat 2 26 0 590 242 95 57 chr5 25713923 25714134 -177371398 + MER20 DNA MER1_type 1 219 0 2629 97 6 0 chr5 25714219 25714581 -177370951 + THE1B LTR MaLR 1 364 0 257 351 58 27 chr5 25714796 25715021 -177370511 - L2 LINE L2 -213 3059 2828 189 74 0 0 chr5 25715964 25715991 -177369541 + (A)n Simple_repeat Simple_repeat 1 27 0 261 358 28 39 chr5 25716902 25716980 -177368552 - MIR SINE MIR -31 231 154 391 75 194 0 chr5 25716980 25717047 -177368485 - MADE1 DNA Mariner 0 80 1 261 358 28 39 chr5 25717047 25717147 -177368385 - MIR SINE MIR -108 154 55 288 237 0 0 chr5 25717948 25718007 -177367525 - L2 LINE L2 0 3272 3214 186 103 0 0 chr5 25718121 25718150 -177367382 + (CA)n Simple_repeat Simple_repeat 2 30 0 1999 132 48 6 chr5 25718225 25718558 -177366974 + MER7A DNA MER2_type 1 345 -1 371 264 14 0 chr5 25718577 25718869 -177366663 + (TA)n Simple_repeat Simple_repeat 1 296 0 23 33 0 0 chr5 25722579 25722609 -177362923 + AT_rich Low_complexity Low_complexity 1 30 0 217 238 0 0 chr5 25722621 25722663 -177362869 + (TATG)n Simple_repeat Simple_repeat 2 43 0 297 0 0 0 chr5 25723479 25723512 -177362020 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 394 318 98 18 chr5 25723513 25723790 -177361742 - HAL1 LINE L1 -722 1785 1487 2036 114 7 0 chr5 25723823 25724147 -177361385 - AluSg SINE Alu 0 326 1 1364 92 63 24 chr5 25724515 25724721 -177360811 - AluSp SINE Alu -12 301 88 1187 113 6 0 chr5 25724724 25724883 -177360649 - AluSp SINE Alu -153 160 1 1563 156 92 18 chr5 25725140 25725422 -177360110 + AluSx SINE Alu 1 303 -9 300 308 33 34 chr5 25725711 25725958 -177359574 - L1MC4a LINE L1 -208 5956 5707 987 226 160 34 chr5 25725983 25726364 -177359168 + MLT1C LTR MaLR 34 462 -5 366 322 40 17 chr5 25726365 25726639 -177358893 - L1MC4a LINE L1 -586 5576 5297 21 0 0 0 chr5 25726871 25726892 -177358640 + AT_rich Low_complexity Low_complexity 1 21 0 2087 144 0 0 chr5 25726955 25727261 -177358271 + AluSx SINE Alu 1 306 -6 390 269 0 0 chr5 25727630 25727775 -177357757 + (TA)n Simple_repeat Simple_repeat 2 146 0 302 302 50 43 chr5 25728572 25728850 -177356682 - L1MC4 LINE L1 -1004 7038 6759 2863 242 54 29 chr5 25729289 25730067 -177355465 + L1MC4a LINE L1 6712 7518 -290 2442 101 31 6 chr5 25730067 25730422 -177355110 - THE1B LTR MaLR 0 364 1 2863 242 54 29 chr5 25730422 25730569 -177354963 + L1MC4a LINE L1 7518 7660 -148 23 33 0 0 chr5 25731027 25731057 -177354475 + AT_rich Low_complexity Low_complexity 1 30 0 257 307 47 13 chr5 25731085 25731235 -177354297 - L1M4 LINE L1 -3316 2830 2676 21 0 0 0 chr5 25731314 25731335 -177354197 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr5 25732039 25732079 -177353453 + AT_rich Low_complexity Low_complexity 1 40 0 328 299 45 8 chr5 25732240 25732374 -177353158 - L2 LINE L2 -240 3073 2935 818 192 7 0 chr5 25732549 25732700 -177352832 - MLT1B LTR MaLR 0 390 239 1911 141 23 3 chr5 25732827 25733132 -177352400 + AluSx SINE Alu 1 311 -1 461 206 98 10 chr5 25733847 25733974 -177351558 + FLAM_A SINE Alu 5 140 0 2262 113 0 14 chr5 25733991 25734344 -177351188 - L1PA13 LINE L1 -5 6158 5811 480 18 0 0 chr5 25734553 25734610 -177350922 + (TC)n Simple_repeat Simple_repeat 2 58 0 2385 75 3 3 chr5 25736607 25736912 -177348620 + AluSg SINE Alu 1 305 -5 1512 208 20 10 chr5 25737327 25737620 -177347912 + AluJo SINE Alu 1 296 -16 21 0 0 0 chr5 25738759 25738780 -177346752 + AT_rich Low_complexity Low_complexity 1 21 0 279 122 0 0 chr5 25740629 25740678 -177344854 + (CAT)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr5 25741753 25741774 -177343758 + AT_rich Low_complexity Low_complexity 1 21 0 401 333 44 48 chr5 25742467 25742719 -177342813 + MIR SINE MIR 2 252 -10 25 0 0 0 chr5 25742862 25742887 -177342645 + AT_rich Low_complexity Low_complexity 1 25 0 1699 174 7 16 chr5 25742995 25743299 -177342233 - AluSx SINE Alu -11 301 1 2028 137 55 25 chr5 25743673 25744037 -177341495 - THE1C LTR MaLR 0 375 1 242 325 12 24 chr5 25744165 25744248 -177341284 + MER5A DNA MER1_type 78 159 -30 240 257 50 40 chr5 25744264 25744365 -177341167 - MARNA DNA Mariner -348 238 137 336 24 0 0 chr5 25744678 25744719 -177340813 + (TG)n Simple_repeat Simple_repeat 2 42 0 739 321 25 4 chr5 25745821 25746064 -177339468 - MIR SINE MIR -4 258 11 305 315 36 0 chr5 25746612 25746723 -177338809 + L1MC4 LINE L1 6589 6703 -1339 * 307 306 24 0 chr5 25746643 25746728 -177338804 - L1MC4 LINE L1 -1339 6703 6617 240 137 0 0 chr5 25746733 25746784 -177338748 - L1MC4 LINE L1 -1339 6703 6653 943 166 13 0 chr5 25746786 25746937 -177338595 - AluSg/x SINE Alu -25 285 133 24 0 0 0 chr5 25746938 25746962 -177338570 + AT_rich Low_complexity Low_complexity 1 24 0 305 257 0 83 chr5 25747907 25748016 -177337516 - L1MC4 LINE L1 -1329 6713 6614 298 328 44 33 chr5 25749216 25749399 -177336133 - L2 LINE L2 -44 3269 3085 241 254 56 14 chr5 25750608 25750679 -177334853 + MIR3 SINE MIR 96 169 -39 557 314 159 19 chr5 25751397 25751712 -177333820 + L2 LINE L2 2607 2965 -349 324 307 21 7 chr5 25751713 25751853 -177333679 + (TA)n Simple_repeat Simple_repeat 2 143 0 453 304 57 30 chr5 25751866 25752129 -177333403 + L2 LINE L2 2977 3246 -67 1223 241 71 3 chr5 25753570 25753906 -177331626 - MLT1A1 LTR MaLR -2 363 5 1671 173 9 43 chr5 25753928 25754072 -177331460 - MLT1A1-int LTR MaLR 0 1735 1588 2510 54 0 0 chr5 25754072 25754369 -177331163 + AluY SINE Alu 1 297 -14 1671 173 9 43 chr5 25754369 25754547 -177330985 - MLT1A1-int LTR MaLR -147 1588 1424 22 35 0 0 chr5 25754605 25754634 -177330898 + AT_rich Low_complexity Low_complexity 1 29 0 219 295 13 26 chr5 25755597 25755675 -177329857 + MIR3 SINE MIR 129 205 -3 770 202 8 97 chr5 25756229 25756467 -177329065 + MER20 DNA MER1_type 3 219 0 434 339 81 37 chr5 25758035 25758497 -177327035 - L2 LINE L2 -31 3282 2793 1192 252 153 46 chr5 25761425 25761948 -177323584 - MLT1E LTR MaLR 0 593 15 583 186 70 16 chr5 25762134 25762263 -177323269 - AluJo SINE Alu -176 136 1 187 314 0 0 chr5 25762275 25762326 -177323206 + MIR SINE MIR 57 107 -155 213 298 107 0 chr5 25762430 25762514 -177323018 - L2 LINE L2 -19 3253 3161 21 0 0 0 chr5 25763335 25763356 -177322176 + AT_rich Low_complexity Low_complexity 1 21 0 227 374 24 0 chr5 25764779 25764862 -177320670 + L2 LINE L2 3188 3272 0 2353 90 0 0 chr5 25764977 25765276 -177320256 + AluSc SINE Alu 1 299 -10 2272 115 0 0 chr5 25766929 25767241 -177318291 - AluSx SINE Alu 0 312 1 610 157 28 0 chr5 25767243 25767351 -177318181 - L1M2 LINE L1 -839 5473 5363 1788 250 47 20 chr5 25767353 25767861 -177317671 - L1ME1 LINE L1 -11 6155 5634 218 95 40 68 chr5 25768200 25768274 -177317258 + (TTATA)n Simple_repeat Simple_repeat 1 72 0 26 0 0 0 chr5 25768402 25768428 -177317104 + AT_rich Low_complexity Low_complexity 1 26 0 2112 120 7 7 chr5 25769475 25769783 -177315749 - AluSg SINE Alu -2 308 1 1755 205 92 66 chr5 25770707 25770792 -177314740 - MER34 LTR ERV1 -1 541 460 2615 42 3 0 chr5 25770792 25771102 -177314430 + AluY SINE Alu 1 311 0 1755 205 92 66 chr5 25771102 25771519 -177314013 - MER34 LTR ERV1 -82 460 26 24 53 0 0 chr5 25771530 25771568 -177313964 + AT_rich Low_complexity Low_complexity 1 38 0 321 252 56 19 chr5 25771649 25771756 -177313776 - MIR SINE MIR -38 224 114 378 271 28 9 chr5 25771831 25771938 -177313594 - MIR SINE MIR -105 157 49 561 258 71 7 chr5 25772056 25772211 -177313321 - MER45A DNA AcHobo -13 165 1 2145 71 0 14 chr5 25773393 25773688 -177311844 + AluY SINE Alu 1 291 -20 409 340 54 33 chr5 25774866 25775107 -177310425 - MIR SINE MIR -1 261 16 22 0 0 0 chr5 25775863 25775885 -177309647 + AT_rich Low_complexity Low_complexity 1 22 0 2079 127 0 3 chr5 25775914 25776205 -177309327 - AluSx SINE Alu -16 296 7 372 178 0 0 chr5 25776598 25776671 -177308861 + LTR30 LTR ERV1 552 624 -98 200 59 29 0 chr5 25776678 25776712 -177308820 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 26 64 0 0 chr5 25779306 25779353 -177306179 + AT_rich Low_complexity Low_complexity 1 47 0 2024 101 9 32 chr5 25779738 25780054 -177305478 - AluSc SINE Alu 0 309 1 37 62 0 0 chr5 25780858 25780923 -177304609 + AT_rich Low_complexity Low_complexity 1 65 0 25 65 0 0 chr5 25781885 25781931 -177303601 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr5 25782446 25782468 -177303064 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr5 25782976 25782997 -177302535 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr5 25783678 25783715 -177301817 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr5 25785170 25785195 -177300337 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr5 25785283 25785305 -177300227 + AT_rich Low_complexity Low_complexity 1 22 0 289 351 37 21 chr5 25785505 25785693 -177299839 - MIR SINE MIR -14 248 58 34 24 0 0 chr5 25788460 25788501 -177297031 + AT_rich Low_complexity Low_complexity 1 41 0 199 366 0 14 chr5 25790372 25790443 -177295089 - L2 LINE L2 -5 3308 3239 1575 181 30 20 chr5 25790545 25790729 -177294803 - AluJb SINE Alu 0 312 122 365 38 57 0 chr5 25790729 25790782 -177294750 + T-rich Low_complexity Low_complexity 5 60 0 1575 181 30 20 chr5 25790782 25790900 -177294632 - AluJb SINE Alu -190 122 7 241 269 21 0 chr5 25791247 25791340 -177294192 + (TA)n Simple_repeat Simple_repeat 1 95 0 725 324 161 43 chr5 25792692 25793582 -177291950 + L2 LINE L2 2320 3312 -1 2347 141 61 4 chr5 25793735 25794195 -177291337 + LTR19A LTR ERV1 1 486 0 1150 234 72 34 chr5 25794624 25794863 -177290669 + MER4C LTR ERV1 1 229 -236 2135 105 3 16 chr5 25794863 25795167 -177290365 + AluSx SINE Alu 3 302 -10 1150 234 72 34 chr5 25795167 25795371 -177290161 + MER4C LTR ERV1 229 461 -4 549 121 43 26 chr5 25795500 25795616 -177289916 + MER4C-int LTR ERV1 135 252 -6346 219 23 93 0 chr5 25795779 25795822 -177289710 + (TTTG)n Simple_repeat Simple_repeat 4 50 0 1928 140 0 10 chr5 25795829 25796121 -177289411 - AluSx SINE Alu -23 289 1 1307 198 104 45 chr5 25796346 25796720 -177288812 + MER4C-int LTR ERV1 994 1389 -4942 1280 229 45 138 chr5 25796839 25797554 -177287978 + MER4C-int LTR ERV1 2360 3007 -4530 2676 211 80 69 chr5 25797570 25798510 -177287022 + LTR49-int LTR ERV1 1603 2531 -4255 1764 181 0 0 chr5 25798510 25798791 -177286741 + AluSx SINE Alu 3 283 -29 207 100 0 0 chr5 25798791 25798821 -177286711 + (TAAG)n Simple_repeat Simple_repeat 2 31 0 2676 211 80 69 chr5 25798821 25799706 -177285826 + LTR49-int LTR ERV1 2530 4763 -2023 * 3859 186 28 18 chr5 25799687 25800509 -177285023 + LTR49-int LTR ERV1 4479 5308 -1023 1039 189 75 137 chr5 25800551 25801047 -177284485 + MER4C LTR ERV1 1 465 0 320 244 35 29 chr5 25801413 25801585 -177283947 + (TA)n Simple_repeat Simple_repeat 2 174 0 684 287 78 4 chr5 25803473 25803703 -177281829 - MIR SINE MIR -1 261 15 2025 138 3 0 chr5 25804391 25804696 -177280836 - AluSx SINE Alu -6 306 1 488 267 38 15 chr5 25805624 25805755 -177279777 - MIR SINE MIR -105 157 24 2231 116 3 0 chr5 25806786 25807096 -177278436 + AluSp SINE Alu 3 313 0 25 65 0 0 chr5 25807115 25807161 -177278371 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr5 25807212 25807242 -177278290 + AT_rich Low_complexity Low_complexity 1 30 0 302 271 28 14 chr5 25807282 25807426 -177278106 + (CATATA)n Simple_repeat Simple_repeat 5 150 0 348 250 111 32 chr5 25807658 25807995 -177277537 - L1M4 LINE L1 -3573 2573 2214 639 339 51 60 chr5 25808700 25808917 -177276615 - HAL1b LINE L1 -705 1726 1509 3019 203 21 89 chr5 25808917 25809956 -177275576 - LTR5 LTR ERVK -1 968 1 639 339 51 60 chr5 25809956 25810392 -177275140 - HAL1b LINE L1 -922 1509 1071 2317 156 11 36 chr5 25810392 25810834 -177274698 - MER61C LTR ERV1 -3 431 1 639 339 51 60 chr5 25810834 25810917 -177274615 - HAL1b LINE L1 -1360 1071 42 2816 113 30 38 chr5 25810962 25811431 -177274101 - MER4C LTR ERV1 0 465 1 1175 224 79 65 chr5 25811686 25812178 -177273354 - MLT1D LTR MaLR -2 503 5 2351 171 24 14 chr5 25812337 25812759 -177272773 + MSTB LTR MaLR 1 426 0 22 80 0 0 chr5 25813494 25813544 -177271988 + AT_rich Low_complexity Low_complexity 1 50 0 1731 122 93 4 chr5 25813632 25813902 -177271630 + AluSx SINE Alu 1 294 -18 206 238 38 62 chr5 25813914 25813994 -177271538 + MIR3 SINE MIR 91 168 -40 241 345 17 17 chr5 25814398 25814517 -177271015 - L2 LINE L2 -3 3310 3192 293 313 15 0 chr5 25815950 25816084 -177269448 + (TA)n Simple_repeat Simple_repeat 2 137 0 7456 156 34 39 chr5 25816265 25816847 -177268685 + Tigger1 DNA MER2_type 28 612 -1806 2126 54 0 11 chr5 25816847 25817124 -177268408 + L1PA5 LINE L1 5880 6153 -1 7456 156 34 39 chr5 25817124 25817687 -177267845 + Tigger1 DNA MER2_type 612 1166 -1252 1292 215 0 39 chr5 25817687 25817994 -177267538 + AluJo SINE Alu 1 295 -17 7456 156 34 39 chr5 25817994 25818292 -177267240 + Tigger1 DNA MER2_type 1166 1464 -954 451 129 14 0 chr5 25818359 25818429 -177267103 - Tigger1 DNA MER2_type -1241 1177 1107 5624 130 31 27 chr5 25818447 25818650 -177266882 + Tigger1 DNA MER2_type 1422 1623 -795 1840 136 7 33 chr5 25818650 25818952 -177266580 + AluSc SINE Alu 1 294 -15 5624 130 31 27 chr5 25818952 25819414 -177266118 + Tigger1 DNA MER2_type 1623 2095 -323 1253 158 74 87 chr5 25819414 25819712 -177265820 + AluSq SINE Alu 4 297 -16 5624 130 31 27 chr5 25819712 25820038 -177265494 + Tigger1 DNA MER2_type 2095 2418 0 1734 265 77 17 chr5 25820038 25820673 -177264859 - L1ME2 LINE L1 -115 6049 5377 1284 261 123 66 chr5 25820706 25821468 -177264064 - L1ME2 LINE L1 -1010 5136 4419 414 0 0 0 chr5 25821468 25821514 -177264018 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 1870 154 3 3 chr5 25821521 25821806 -177263726 - AluJb SINE Alu -26 286 2 1284 261 123 66 chr5 25821806 25822271 -177263261 - L1ME2 LINE L1 -1732 4414 3831 268 374 9 9 chr5 25822332 25822439 -177263093 - MIR SINE MIR -148 114 8 2862 9 0 0 chr5 25822635 25822951 -177262581 - AluYb8 SINE Alu -2 316 1 4602 95 30 95 chr5 25823939 25824773 -177260759 + LTR17 LTR ERV1 1 780 0 2826 170 45 11 chr5 25825342 25825876 -177259656 + L1MC1 LINE L1 5538 6089 -244 522 0 0 0 chr5 25825883 25825941 -177259591 + (TA)n Simple_repeat Simple_repeat 1 58 0 2170 94 4 0 chr5 25825943 25826219 -177259313 + AluSp SINE Alu 1 277 -36 956 124 0 0 chr5 25826219 25826348 -177259184 + AluSg/x SINE Alu 160 288 -24 217 118 39 0 chr5 25826348 25826399 -177259133 + (TA)n Simple_repeat Simple_repeat 1 53 0 1226 176 9 0 chr5 25826406 25826622 -177258910 + L1MC1 LINE L1 6111 6328 -5 188 317 72 113 chr5 25827373 25827585 -177257947 - L2 LINE L2 -562 2752 2560 1940 197 7 31 chr5 25827585 25828006 -177257526 + LTR57 LTR ERVL 1 411 0 188 317 72 113 chr5 25828006 25828156 -177257376 - L2 LINE L2 -754 2560 2405 28 29 0 0 chr5 25828185 25828220 -177257312 + AT_rich Low_complexity Low_complexity 1 35 0 190 283 0 0 chr5 25829469 25829515 -177256017 + L2 LINE L2 3226 3271 -1 2173 116 0 0 chr5 25829750 25830060 -177255472 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr5 25830410 25830431 -177255101 + AT_rich Low_complexity Low_complexity 1 21 0 1493 176 50 58 chr5 25831824 25832183 -177253349 + MLT2C1 LTR ERVL 1 356 -41 245 128 21 0 chr5 25832184 25832231 -177253301 + (CA)n Simple_repeat Simple_repeat 2 49 0 2115 154 0 61 chr5 25832266 25832426 -177253106 + Tigger2 DNA MER2_type 2334 2502 -216 2081 86 7 7 chr5 25832426 25832729 -177252803 - AluSc SINE Alu 0 303 1 2115 154 0 61 chr5 25832729 25832975 -177252557 + Tigger2 DNA MER2_type 2502 2716 -2 2092 72 4 0 chr5 25832975 25833252 -177252280 + L1PA8 LINE L1 5875 6152 -20 180 179 0 0 chr5 25833271 25833310 -177252222 + GA-rich Low_complexity Low_complexity 2 40 0 230 311 31 66 chr5 25833773 25833969 -177251563 - MIR SINE MIR -71 191 3 2408 78 0 0 chr5 25834354 25834660 -177250872 + AluY SINE Alu 2 307 -4 25 65 0 0 chr5 25834810 25834856 -177250676 + AT_rich Low_complexity Low_complexity 1 46 0 306 271 16 70 chr5 25835584 25835713 -177249819 + MIR SINE MIR 100 221 -41 309 322 123 17 chr5 25836819 25837055 -177248477 + L1MC4a LINE L1 5607 5867 -1941 1552 194 69 3 chr5 25837098 25837417 -177248115 - MER2 DNA MER2_type -4 340 1 258 32 0 0 chr5 25837418 25837449 -177248083 + (CA)n Simple_repeat Simple_repeat 2 32 0 1317 252 24 24 chr5 25839440 25839813 -177245719 + LTR40a LTR ERVL 98 470 -49 2279 114 0 0 chr5 25840165 25840471 -177245061 - AluSq SINE Alu -7 306 1 22 0 0 0 chr5 25840931 25840953 -177244579 + AT_rich Low_complexity Low_complexity 1 22 0 1823 131 0 0 chr5 25841087 25841354 -177244178 - AluSx SINE Alu 0 312 46 2097 112 7 3 chr5 25842596 25842899 -177242633 + AluSp SINE Alu 1 304 -9 892 294 73 47 chr5 25843740 25844233 -177241299 + L1M4 LINE L1 2400 2878 -3268 2214 110 0 3 chr5 25844233 25844525 -177241007 + AluSc SINE Alu 1 291 -18 892 294 73 47 chr5 25844525 25844602 -177240930 + L1M4 LINE L1 2878 2951 -3195 2194 105 26 76 chr5 25844602 25844983 -177240549 + THE1B LTR MaLR 1 362 -2 892 294 73 47 chr5 25844983 25845228 -177240304 + L1M4 LINE L1 2951 3238 -2908 1198 267 124 32 chr5 25845239 25845771 -177239761 + L1ME3A LINE L1 5580 6160 -10 2921 221 26 10 chr5 25845942 25846567 -177238965 + MER39 LTR ERV1 73 707 0 295 295 63 11 chr5 25846993 25847088 -177238444 + HERVL LTR ERVL 4225 4324 -1161 662 352 35 41 chr5 25847270 25848083 -177237449 + HERVL LTR ERVL 4234 5365 -289 329 282 73 0 chr5 25848258 25848368 -177237164 + LTR16B LTR ERVL 108 225 -239 1077 231 108 10 chr5 25848371 25848678 -177236854 - MER67C LTR ERV1 -307 403 67 504 125 12 0 chr5 25848715 25848795 -177236737 - MER67D LTR ERV1 -433 81 1 271 246 0 0 chr5 25849245 25849302 -177236230 - MER4-int LTR ERV1 -5429 1169 1113 415 333 53 22 chr5 25849865 25850093 -177235439 - MIR SINE MIR -18 244 10 440 93 0 0 chr5 25850725 25850800 -177234732 - Alu SINE Alu 0 310 236 1406 72 0 6 chr5 25850805 25850986 -177234546 + AluSg/x SINE Alu 126 305 -7 2119 119 3 0 chr5 25851117 25851427 -177234105 + AluSp SINE Alu 1 311 -2 21 57 0 0 chr5 25851773 25851808 -177233724 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr5 25851957 25851983 -177233549 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr5 25852090 25852133 -177233399 + AT_rich Low_complexity Low_complexity 1 43 0 34 0 0 0 chr5 25852189 25852223 -177233309 + AT_rich Low_complexity Low_complexity 1 34 0 36 62 0 0 chr5 25852574 25852638 -177232894 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr5 25852967 25852989 -177232543 + AT_rich Low_complexity Low_complexity 1 22 0 5964 254 56 27 chr5 25853707 25855905 -177229627 + L1MA6 LINE L1 168 2301 -4907 1287 225 10 50 chr5 25855905 25856045 -177229487 + AluJo SINE Alu 3 126 -186 2067 92 0 66 chr5 25856045 25856362 -177229170 + AluY SINE Alu 1 296 -15 817 245 16 16 chr5 25856331 25856519 -177229013 + AluJo SINE Alu 101 288 -24 1287 225 10 50 chr5 25856362 25856519 -177229013 + AluJo SINE Alu 126 288 -24 5964 254 56 27 chr5 25856519 25857627 -177227905 + L1MA6 LINE L1 2301 3375 -3833 2320 88 0 3 chr5 25857627 25857943 -177227589 + AluSc SINE Alu 1 315 0 5964 254 56 27 chr5 25857943 25858691 -177226841 + L1MA6 LINE L1 3375 4899 -2309 6414 180 49 5 chr5 25858698 25859361 -177226171 + L1MA6 LINE L1 5009 5641 -1721 222 37 0 0 chr5 25859361 25859388 -177226144 + (CA)n Simple_repeat Simple_repeat 2 28 0 6414 180 49 5 chr5 25859388 25860282 -177225250 + L1MA6 LINE L1 5641 6642 -720 2912 176 177 16 chr5 25860282 25860993 -177224539 + LTR1B LTR ERV1 1 826 0 6414 180 49 5 chr5 25860993 25861022 -177224510 + L1MA6 LINE L1 6642 6668 -694 1803 188 18 18 chr5 25861067 25861456 -177224076 + L1MA6 LINE L1 6974 7362 0 490 304 103 0 chr5 25861641 25861845 -177223687 + MIR SINE MIR 19 243 -19 27 49 0 0 chr5 25861861 25861902 -177223630 + AT_rich Low_complexity Low_complexity 1 41 0 320 319 65 18 chr5 25862204 25862440 -177223092 + L1ME LINE L1 5401 5653 -517 344 333 87 26 chr5 25863101 25863492 -177222040 - L1M4 LINE L1 -1499 4647 4233 2409 57 14 14 chr5 25864152 25864449 -177221083 - AluY SINE Alu -14 297 1 283 315 14 7 chr5 25864761 25864904 -177220628 - L1M4 LINE L1 -3317 2829 2686 22 0 0 0 chr5 25865150 25865172 -177220360 + AT_rich Low_complexity Low_complexity 1 22 0 644 170 28 0 chr5 25865433 25865539 -177219993 + FLAM_C SINE Alu 3 111 -32 325 248 124 55 chr5 25865570 25865788 -177219744 - L1M4 LINE L1 -1560 4586 4354 25 51 0 0 chr5 25866398 25866437 -177219095 + AT_rich Low_complexity Low_complexity 1 39 0 1941 120 25 0 chr5 25866501 25866801 -177218731 - AluSx SINE Alu 0 307 1 29 28 0 0 chr5 25867006 25867042 -177218490 + AT_rich Low_complexity Low_complexity 1 36 0 220 255 32 32 chr5 25867127 25867221 -177218311 + (CATATA)n Simple_repeat Simple_repeat 5 98 0 25 0 0 0 chr5 25868116 25868141 -177217391 + AT_rich Low_complexity Low_complexity 1 25 0 244 321 12 0 chr5 25868195 25868279 -177217253 + (TA)n Simple_repeat Simple_repeat 1 85 0 270 274 145 64 chr5 25868626 25868860 -177216672 + L3 LINE CR1 1138 1390 -187 22 70 0 0 chr5 25871203 25871246 -177214286 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr5 25872389 25872412 -177213120 + AT_rich Low_complexity Low_complexity 1 23 0 1925 235 13 17 chr5 25872470 25872930 -177212602 + MLT1C-int LTR MaLR 247 704 -667 249 167 17 17 chr5 25872927 25872987 -177212545 + MLT1C-int LTR MaLR 828 887 -484 * 994 234 25 12 chr5 25873190 25873434 -177212098 + MLT1C-int LTR MaLR 1125 1371 0 1339 237 90 18 chr5 25873436 25873870 -177211662 + MLT1C LTR MaLR 3 467 0 1691 116 0 0 chr5 25874546 25874779 -177210753 - LTR12 LTR ERV1 -2 712 480 298 274 11 0 chr5 25874779 25874874 -177210658 - LTR30 LTR ERV1 -79 643 548 548 82 0 0 chr5 25874874 25874947 -177210585 - LTR12 LTR ERV1 -433 281 209 5655 100 1 0 chr5 25874950 25875720 -177209812 - HERV17 LTR ERV1 -3 8396 7626 1841 141 69 97 chr5 25875718 25876638 -177208894 - HERV17 LTR ERV1 -5156 1740 703 * 5221 119 6 20 chr5 25876605 25877418 -177208114 - HERV17 LTR ERV1 -3419 4980 4179 2349 143 81 66 chr5 25877418 25877901 -177207631 + LTR2B LTR ERV1 1 490 0 4557 146 64 30 chr5 25877901 25879248 -177206284 + Harlequin LTR ERV1 1 1409 -5487 * 25773 75 2 7 chr5 25879241 25882609 -177202923 + Harlequin LTR ERV1 1818 5169 -1727 5128 97 14 10 chr5 25882597 25883328 -177202204 + Harlequin LTR ERV1 6163 6896 0 * 2260 170 36 45 chr5 25883328 25883822 -177201710 + LTR2B LTR ERV1 1 490 0 28038 104 12 26 chr5 25883822 25888021 -177197511 - HERV9 LTR ERV1 -4217 4182 40 706 137 0 0 chr5 25888034 25888136 -177197396 - LTR12 LTR ERV1 0 714 613 382 211 11 0 chr5 25888136 25888226 -177197306 - LTR30 LTR ERV1 -79 643 553 1781 98 29 8 chr5 25888227 25888534 -177196998 - LTR12 LTR ERV1 -406 2032 57 276 139 0 0 chr5 25888534 25888577 -177196955 - LTR30 LTR ERV1 -679 43 1 35 54 0 0 chr5 25889617 25889673 -177195859 + AT_rich Low_complexity Low_complexity 1 56 0 428 219 65 0 chr5 25890701 25890824 -177194708 + MER94 DNA DNA 1 131 -3 205 138 0 0 chr5 25891089 25891118 -177194414 + (TG)n Simple_repeat Simple_repeat 1 29 0 322 300 0 0 chr5 25891118 25891208 -177194324 - L1MC4 LINE L1 -1340 6702 6613 1775 165 3 25 chr5 25891622 25891937 -177193595 + AluJb SINE Alu 4 311 -1 1284 119 0 6 chr5 25894632 25894809 -177190723 + AluSc SINE Alu 114 289 -20 1965 137 3 13 chr5 25894809 25895122 -177190410 + AluSg SINE Alu 1 310 0 916 186 229 7 chr5 25896184 25896464 -177189068 - MER2 DNA MER2_type -2 342 1 815 159 22 7 chr5 25899600 25899738 -177185794 - L1PA16 LINE L1 -9 6157 6018 6851 64 13 0 chr5 25899800 25901001 -177184531 - L1PA7 LINE L1 -13 6141 4936 270 172 31 0 chr5 25901183 25901247 -177184285 + MER52A LTR ERV1 829 894 -861 22 70 0 0 chr5 25901599 25901642 -177183890 + AT_rich Low_complexity Low_complexity 1 43 0 15818 26 1 0 chr5 25902283 25904161 -177181371 - L1P1 LINE L1 -779 5367 3489 1954 9 0 9 chr5 25904158 25904387 -177181145 + L1P1 LINE L1 5362 5588 -567 * 1284 119 0 6 chr5 25904872 25905049 -177180483 + AluSc SINE Alu 114 289 -20 1965 137 3 13 chr5 25905049 25905362 -177180170 + AluSg SINE Alu 1 310 0 916 186 229 7 chr5 25906424 25906704 -177178828 - MER2 DNA MER2_type -2 342 1 809 159 22 7 chr5 25909840 25909978 -177175554 - L1PA16 LINE L1 -9 6157 6018 6808 65 13 0 chr5 25910040 25911241 -177174291 - L1PA7 LINE L1 -13 6141 4936 265 172 31 0 chr5 25911423 25911487 -177174045 + MER52A LTR ERV1 829 894 -861 22 70 0 0 chr5 25911839 25911882 -177173650 + AT_rich Low_complexity Low_complexity 1 43 0 26 50 0 0 chr5 25912518 25912558 -177172974 + AT_rich Low_complexity Low_complexity 1 40 0 33 43 0 0 chr5 25912851 25912898 -177172634 + AT_rich Low_complexity Low_complexity 1 47 0 244 234 78 0 chr5 25913724 25913801 -177171731 - L1ME LINE L1 -526 5595 5513 23 33 0 0 chr5 25913874 25913904 -177171628 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr5 25914381 25914409 -177171123 + AT_rich Low_complexity Low_complexity 1 28 0 247 194 48 16 chr5 25914419 25914481 -177171051 - L1ME LINE L1 -454 5667 5604 209 341 23 0 chr5 25914725 25914813 -177170719 + MIR SINE MIR 54 143 -119 881 241 150 88 chr5 25915002 25915561 -177169971 + LTR28 LTR ERV1 1 594 -426 621 245 0 0 chr5 25916114 25916261 -177169271 + L1MA9 LINE L1 5647 5793 -519 230 152 0 0 chr5 25916276 25916322 -177169210 - LTR66 LTR ERVL -171 439 394 2466 159 25 82 chr5 25916324 25916885 -177168647 + L1MA9 LINE L1 5783 6311 -1 373 305 46 23 chr5 25917030 25917204 -177168328 - L1PBb LINE L1 -5656 1929 1752 379 314 131 49 chr5 25917398 25917643 -177167889 - L1PBb LINE L1 -5789 1796 1532 330 345 34 57 chr5 25918267 25918444 -177167088 - L1PBb LINE L1 -6015 1570 1398 896 326 69 49 chr5 25918579 25919177 -177166355 - L1M2 LINE L1 -6397 1188 10 1109 256 10 35 chr5 25919259 25919303 -177166229 - AluJo SINE Alu 0 311 267 2165 95 13 0 chr5 25919303 25919607 -177165925 + AluSp SINE Alu 1 308 -5 1109 256 10 35 chr5 25919607 25919873 -177165659 - AluJo SINE Alu -44 267 8 531 202 9 26 chr5 25919907 25920021 -177165511 - LOR1a LTR ERV1 0 497 386 2360 85 0 0 chr5 25921034 25921339 -177164193 - AluY SINE Alu -6 305 1 4962 68 36 29 chr5 25921869 25922588 -177162944 - L1PA8 LINE L1 -15 6157 5434 182 285 125 75 chr5 25922883 25923083 -177162449 - MIR SINE MIR -3 259 50 23 54 0 0 chr5 25923414 25923451 -177162081 + AT_rich Low_complexity Low_complexity 1 37 0 352 206 9 9 chr5 25923930 25924037 -177161495 + GA-rich Low_complexity Low_complexity 2 108 0 2187 55 7 4 chr5 25924263 25924538 -177160994 + AluY SINE Alu 34 309 -2 4443 194 15 66 chr5 25924551 25925504 -177160028 + L1MA8 LINE L1 4356 5142 -1149 1798 206 9 0 chr5 25925504 25925849 -177159683 - MER7A DNA MER2_type 0 346 1 4443 194 15 66 chr5 25925849 25926934 -177158598 + L1MA8 LINE L1 5142 6281 -10 1985 154 73 14 chr5 25926972 25927316 -177158216 - THE1B LTR MaLR 0 364 1 429 168 66 5 chr5 25927383 25927488 -177158044 - L1MB1 LINE L1 -10 6179 6066 240 122 54 54 chr5 25927492 25927566 -177157966 + (TATAG)n Simple_repeat Simple_repeat 2 75 0 986 160 6 33 chr5 25928082 25928263 -177157269 - AluJb SINE Alu -1 311 136 21 36 0 0 chr5 25928269 25928297 -177157235 + AT_rich Low_complexity Low_complexity 1 28 0 417 233 75 101 chr5 25928336 25928654 -177156878 - MER46C DNA MER2_type -7 331 22 718 194 46 104 chr5 25929615 25930001 -177155531 - MER89 LTR ERV1 -99 460 2 26 30 0 0 chr5 25930400 25930433 -177155099 + AT_rich Low_complexity Low_complexity 1 33 0 549 205 57 0 chr5 25931289 25931411 -177154121 + MLT1F1 LTR MaLR 3 131 -436 1009 239 12 12 chr5 25931413 25931573 -177153959 + L1MD3 LINE L1 7411 7573 -422 2034 211 135 40 chr5 25931573 25932327 -177153205 + LTR1B LTR ERV1 1 826 0 1009 239 12 12 chr5 25932327 25932421 -177153111 + L1MD3 LINE L1 7572 7665 -330 456 302 28 35 chr5 25932421 25932676 -177152856 - MER34B LTR ERV1 0 565 313 692 191 115 27 chr5 25932816 25932999 -177152533 + LTR1B LTR ERV1 369 567 -259 1204 196 69 16 chr5 25933103 25933409 -177152123 + L1MD3 LINE L1 7659 7980 -15 214 403 25 8 chr5 25933666 25933785 -177151747 + MIR SINE MIR 16 136 -72 2446 68 0 0 chr5 25933935 25934246 -177151286 + AluY SINE Alu 1 311 0 547 316 95 7 chr5 25934685 25935376 -177150156 + L1ME LINE L1 4969 5721 -441 312 325 57 0 chr5 25937750 25937873 -177147659 + MLT-int LTR MaLR 1185 1314 -421 2042 190 81 0 chr5 25937939 25938333 -177147199 + MLT1A1-int LTR MaLR 1310 1735 0 1404 215 24 53 chr5 25938333 25938709 -177146823 + MLT1A1 LTR MaLR 1 365 0 1143 188 0 27 chr5 25939318 25939541 -177145991 - AluJo SINE Alu -11 301 85 2274 98 0 0 chr5 25939868 25940164 -177145368 - AluSq SINE Alu -17 296 1 565 244 67 12 chr5 25940241 25940405 -177145127 - MER58B DNA MER1_type -2 339 167 262 203 0 34 chr5 25940416 25940475 -177145057 + Tigger5 DNA MER2_type 2263 2319 -4 26 0 0 0 chr5 25940646 25940672 -177144860 + AT_rich Low_complexity Low_complexity 1 26 0 500 281 96 65 chr5 25941162 25941757 -177143775 + HAL1 LINE L1 739 1351 -1156 2070 131 3 0 chr5 25941795 25942093 -177143439 - AluY SINE Alu -12 299 1 1267 97 102 0 chr5 25942249 25942445 -177143087 + L1PA10 LINE L1 5948 6163 -5 435 326 33 37 chr5 25942491 25942733 -177142799 + HAL1 LINE L1 1390 1630 -877 564 291 114 24 chr5 25942889 25943390 -177142142 + HAL1 LINE L1 1860 2405 -102 220 205 0 0 chr5 25943729 25943768 -177141764 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2163 110 0 17 chr5 25943769 25944069 -177141463 - AluSx SINE Alu -17 295 1 379 240 0 0 chr5 25944070 25944145 -177141387 - Charlie1 DNA MER1_type -1170 1591 1517 29 28 0 0 chr5 25944439 25944475 -177141057 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr5 25945128 25945163 -177140369 + AT_rich Low_complexity Low_complexity 1 35 0 284 246 15 0 chr5 25945889 25945954 -177139578 - tRNA-Phe-TTC tRNA tRNA -7 69 4 365 170 80 62 chr5 25946997 25947109 -177138423 + MER51D LTR ERV1 500 613 -44 1089 233 164 31 chr5 25947246 25947692 -177137840 - MLT1D LTR MaLR 0 505 1 542 304 13 27 chr5 25948578 25948802 -177136730 + ERVL LTR ERVL 4871 5091 -673 451 262 60 13 chr5 25949495 25949644 -177135888 + MLT2E LTR ERVL 32 187 -441 1830 177 124 111 chr5 25951265 25951339 -177134193 - MLT2D LTR ERVL 0 464 392 312 27 0 0 chr5 25951339 25951376 -177134156 + (CA)n Simple_repeat Simple_repeat 2 38 0 1830 177 124 111 chr5 25951376 25951601 -177133931 - MLT2D LTR ERVL -72 392 154 2130 139 128 8 chr5 25951601 25951983 -177133549 + MSTA LTR MaLR 1 428 0 1830 177 124 111 chr5 25951983 25952140 -177133392 - MLT2D LTR ERVL -310 154 1 29 0 0 0 chr5 25952222 25952251 -177133281 + AT_rich Low_complexity Low_complexity 1 29 0 183 42 0 0 chr5 25952315 25952339 -177133193 + (CATA)n Simple_repeat Simple_repeat 3 26 0 23 0 0 0 chr5 25954747 25954770 -177130762 + AT_rich Low_complexity Low_complexity 1 23 0 775 341 54 60 chr5 25955017 25956173 -177129359 - L2 LINE L2 -4 3309 2152 653 135 0 0 chr5 25956461 25956557 -177128975 + AluJo SINE Alu 5 100 -212 826 214 50 5 chr5 25956681 25956882 -177128650 + AluJo SINE Alu 99 308 -4 592 346 59 30 chr5 25957146 25957748 -177127784 - L2 LINE L2 0 3313 2615 854 345 123 14 chr5 25957826 25958420 -177127112 + L2 LINE L2 1883 2541 -773 266 350 124 0 chr5 25958441 25958578 -177126954 - L2 LINE L2 -1729 1585 1432 530 175 42 0 chr5 25958837 25958957 -177126575 - MLT1D LTR MaLR -2 503 379 2382 144 3 0 chr5 25959117 25959478 -177126054 - THE1B LTR MaLR -2 362 1 332 362 51 7 chr5 25959603 25959741 -177125791 - MIR3 SINE MIR -21 187 44 22 0 0 0 chr5 25961020 25961042 -177124490 + AT_rich Low_complexity Low_complexity 1 22 0 976 303 3 18 chr5 25963022 25963349 -177122183 + ERVL LTR ERVL 4807 5128 -636 26 0 0 0 chr5 25963748 25963774 -177121758 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr5 25964436 25964456 -177121076 + (T)n Simple_repeat Simple_repeat 1 20 0 12102 128 16 54 chr5 25964759 25967632 -177117900 + L1P3 LINE L1 8 2875 -3586 845 81 81 0 chr5 25967632 25967755 -177117777 - LTR12 LTR ERV1 0 714 582 4233 118 82 69 chr5 25967756 25968570 -177116962 - LTR12 LTR ERV1 -1 825 1 692 278 0 48 chr5 25968756 25969029 -177116503 - pTR5 LTR ERV1 -1410 1028 769 5305 100 6 2 chr5 25969037 25969837 -177115695 + L1P LINE L1 2550 3352 -2794 2541 85 12 0 chr5 25969839 25970179 -177115353 + LTR14A LTR ERVK 1 344 0 22386 71 3 6 chr5 25970179 25972090 -177113442 + HERVK14 LTR ERVK 1 1900 -4045 5175 88 91 21 chr5 25972090 25972862 -177112670 - LTR12 LTR ERV1 0 826 1 22386 71 3 6 chr5 25972862 25973822 -177111710 + HERVK14 LTR ERVK 1900 2862 -3083 5621 66 83 8 chr5 25973812 25974584 -177110948 + HERVK14 LTR ERVK 4930 5759 -186 * 363 172 0 18 chr5 25974584 25974658 -177110874 + MER41C LTR ERV1 1 61 -493 757 71 18 35 chr5 25974659 25974772 -177110760 + HERVK14 LTR ERVK 5835 5945 0 2673 51 27 0 chr5 25974775 25975110 -177110422 + LTR14A LTR ERVK 1 344 0 3500 128 26 29 chr5 25975110 25975759 -177109773 + L1P LINE L1 3347 3993 -2153 7001 95 12 7 chr5 25975859 25976884 -177108648 - L1P LINE L1 -798 5348 4319 888 90 0 0 chr5 25976984 25977106 -177108426 + L1PA7 LINE L1 6032 6153 -1 22 0 0 0 chr5 25977143 25977165 -177108367 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr5 25977234 25977257 -177108275 + AT_rich Low_complexity Low_complexity 1 23 0 275 310 260 5 chr5 25977700 25977900 -177107632 + MIR SINE MIR 1 251 -11 272 188 14 0 chr5 25978379 25978448 -177107084 + T-rich Low_complexity Low_complexity 5 74 0 891 224 6 0 chr5 25978448 25978622 -177106910 - FAM SINE Alu 0 175 1 254 171 14 0 chr5 25978815 25978885 -177106647 + (CA)n Simple_repeat Simple_repeat 2 72 0 2085 113 17 0 chr5 25978893 25979184 -177106348 - AluSx SINE Alu -16 296 1 423 0 0 0 chr5 25979280 25979327 -177106205 + (TA)n Simple_repeat Simple_repeat 1 47 0 28 48 0 0 chr5 25980310 25980352 -177105180 + AT_rich Low_complexity Low_complexity 1 42 0 312 299 51 40 chr5 25980545 25980722 -177104810 + L1MDa LINE L1 2468 2646 -3894 536 297 100 34 chr5 25980838 25981158 -177104374 - L1ME3A LINE L1 -18 6152 5812 1079 263 128 37 chr5 25981180 25981641 -177103891 - MLT1F1 LTR MaLR -2 565 63 850 271 18 7 chr5 25981678 25981951 -177103581 - L1ME3A LINE L1 -372 5798 5523 275 238 0 12 chr5 25981999 25982083 -177103449 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 258 338 107 11 chr5 25982096 25982377 -177103155 - L1ME3A LINE L1 -1214 4932 4625 2305 220 62 37 chr5 25982666 25983261 -177102271 + MER90 LTR ERV1 4 613 -1 322 331 68 55 chr5 25984286 25984659 -177100873 + L2 LINE L2 1944 2326 -988 6443 76 8 5 chr5 25984659 25985529 -177100003 + L1PA7 LINE L1 5278 6150 -4 322 331 68 55 chr5 25985529 25985626 -177099906 + L2 LINE L2 2326 2420 -894 308 237 65 43 chr5 25986021 25986114 -177099418 - MLT1A2 LTR MaLR -275 99 5 2351 73 7 0 chr5 25986558 25986861 -177098671 + AluY SINE Alu 1 305 -6 370 262 78 43 chr5 25987782 25987923 -177097609 - MLT1L LTR MaLR -108 507 362 2472 66 3 0 chr5 25988277 25988581 -177096951 - AluY SINE Alu -6 305 1 331 85 51 0 chr5 25989453 25989512 -177096020 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr5 25990688 25990716 -177094816 + AT_rich Low_complexity Low_complexity 1 28 0 1235 184 24 14 chr5 25991948 25992236 -177093296 - L1MA4 LINE L1 -5 6295 6005 351 0 0 0 chr5 25992433 25992472 -177093060 + (TAA)n Simple_repeat Simple_repeat 1 39 0 25 0 0 0 chr5 25993978 25994003 -177091529 + AT_rich Low_complexity Low_complexity 1 25 0 37 39 0 0 chr5 25994093 25994144 -177091388 + AT_rich Low_complexity Low_complexity 1 51 0 191 36 36 0 chr5 25995025 25995053 -177090479 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 26 50 0 0 chr5 25995836 25995876 -177089656 + AT_rich Low_complexity Low_complexity 1 40 0 7104 52 3 0 chr5 25996224 25997294 -177088238 + L1PA5 LINE L1 5082 6154 0 2008 116 0 14 chr5 25997689 25997973 -177087559 - AluSx SINE Alu -31 281 2 686 204 120 22 chr5 25997973 25998198 -177087334 - L1MDb LINE L1 -5327 1216 970 435 139 0 0 chr5 25998209 25998288 -177087244 - L1MA7 LINE L1 -6 6285 6207 826 176 47 0 chr5 25998392 25998562 -177086970 - L1MA7 LINE L1 -130 6161 5984 877 296 4 15 chr5 25999184 25999448 -177086084 - L1MDb LINE L1 -6261 279 19 216 0 0 0 chr5 25999513 25999537 -177085995 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2200 98 0 3 chr5 25999539 25999825 -177085707 - AluSq SINE Alu -28 285 1 183 80 0 0 chr5 26000072 26000097 -177085435 + (TC)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr5 26000750 26000772 -177084760 + AT_rich Low_complexity Low_complexity 1 22 0 279 250 39 23 chr5 26001775 26001903 -177083629 + L1MEc LINE L1 484 613 -6212 553 299 48 30 chr5 26002359 26002794 -177082738 + L1MEc LINE L1 1268 1710 -4832 1326 277 69 35 chr5 26003359 26003804 -177081728 + L1M4c LINE L1 1072 1549 -4835 2426 87 0 0 chr5 26003804 26004114 -177081418 + AluY SINE Alu 1 310 -1 1326 277 69 35 chr5 26004114 26004351 -177081181 + L1M4c LINE L1 1549 1777 -4607 218 125 21 0 chr5 26004630 26004678 -177080854 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 31 26 0 0 chr5 26004847 26004885 -177080647 + AT_rich Low_complexity Low_complexity 1 38 0 515 343 103 44 chr5 26004959 26005347 -177080185 - L2 LINE L2 -2816 498 88 2017 119 0 57 chr5 26005665 26005983 -177079549 - AluSq SINE Alu -12 301 2 322 278 142 87 chr5 26006132 26006513 -177079019 - L1ME LINE L1 -462 5659 5258 407 243 90 0 chr5 26006599 26006710 -177078822 - MER3 DNA MER1_type -88 121 1 39 0 0 0 chr5 26007120 26007159 -177078373 + AT_rich Low_complexity Low_complexity 1 39 0 1929 119 16 3 chr5 26007282 26007594 -177077938 - L1MA1 LINE L1 0 6302 5987 827 203 0 21 chr5 26007594 26007781 -177077751 + L1M4c LINE L1 2560 2742 -3640 2539 55 0 0 chr5 26008981 26009289 -177076243 + AluY SINE Alu 1 308 -3 24 0 0 0 chr5 26009922 26009946 -177075586 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr5 26010063 26010087 -177075445 + (TAA)n Simple_repeat Simple_repeat 2 25 0 286 214 22 22 chr5 26010158 26010247 -177075285 - MER94 DNA DNA -21 113 25 326 319 21 7 chr5 26010260 26010404 -177075128 + L1MC4 LINE L1 6879 7024 -1018 1981 140 36 32 chr5 26010433 26010952 -177074580 + MLT2A2 LTR ERVL 1 421 -32 395 82 98 0 chr5 26011083 26011144 -177074388 + MLT2A2 LTR ERVL 387 453 0 389 269 92 56 chr5 26011150 26011510 -177074022 + L1MC5 LINE L1 7113 7485 -476 418 242 51 47 chr5 26011513 26011728 -177073804 + L1MC5 LINE L1 7631 7846 -115 26 0 0 0 chr5 26011756 26011782 -177073750 + AT_rich Low_complexity Low_complexity 1 26 0 770 297 22 0 chr5 26112687 26112919 -176972613 + MIR SINE MIR 5 241 -21 1115 232 140 29 chr5 26113241 26113590 -176971942 - L1MA9 LINE L1 -301 6011 5624 897 189 18 84 chr5 26113592 26113878 -176971654 + L1MA9 LINE L1 6008 6274 -38 53 90 0 0 chr5 26114680 26114824 -176970708 + AT_rich Low_complexity Low_complexity 1 144 0 32 43 0 0 chr5 26115354 26115400 -176970132 + AT_rich Low_complexity Low_complexity 1 46 0 1278 122 19 24 chr5 26116492 26116697 -176968835 - Charlie3 DNA MER1_type -4 2706 2503 * 1311 169 59 17 chr5 26116684 26116921 -176968611 - Charlie3 DNA MER1_type -2463 247 1 191 356 100 0 chr5 26117083 26117173 -176968359 + L2 LINE L2 3155 3253 -19 26 0 0 0 chr5 26117320 26117346 -176968186 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr5 26118258 26118286 -176967246 + AT_rich Low_complexity Low_complexity 1 28 0 9708 197 55 36 chr5 26119210 26120041 -176965491 + L1MB3 LINE L1 18 832 -5552 180 0 0 0 chr5 26120041 26120061 -176965471 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9708 197 55 36 chr5 26120061 26121611 -176963921 + L1MB3 LINE L1 832 2444 -3940 980 9 0 0 chr5 26121696 26121809 -176963723 + AluYa5/8 SINE Alu 199 311 0 6339 246 37 19 chr5 26121809 26123600 -176961932 + L1MB3 LINE L1 2667 4503 -1879 255 61 0 0 chr5 26123600 26123633 -176961899 + (CA)n Simple_repeat Simple_repeat 2 34 0 6339 246 37 19 chr5 26123633 26123941 -176961591 + L1MB3 LINE L1 4503 4804 -1578 2390 195 76 52 chr5 26123955 26124114 -176961418 + L1MB3 LINE L1 5073 5227 -1192 2239 110 0 0 chr5 26124114 26124423 -176961109 - AluSc SINE Alu 0 309 1 2390 195 76 52 chr5 26124423 26125257 -176960275 + L1MB3 LINE L1 5227 6084 -335 553 100 0 0 chr5 26125299 26125379 -176960153 + MADE1 DNA Mariner 1 80 0 21 0 0 0 chr5 26125408 26125429 -176960103 + AT_rich Low_complexity Low_complexity 1 21 0 390 214 26 146 chr5 26125841 26126033 -176959499 + LTR16A1 LTR ERVL 284 452 -5 281 264 96 60 chr5 26126136 26126303 -176959229 - MLT1J LTR MaLR 0 511 339 381 329 53 12 chr5 26126357 26126600 -176958932 - MLT1J LTR MaLR -258 253 1 21 71 0 0 chr5 26126734 26126776 -176958756 + AT_rich Low_complexity Low_complexity 1 42 0 225 402 8 17 chr5 26127281 26127398 -176958134 + L2 LINE L2 3153 3268 -4 230 157 0 59 chr5 26127790 26127841 -176957691 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 27 49 0 0 chr5 26128631 26128672 -176956860 + AT_rich Low_complexity Low_complexity 1 41 0 1778 160 38 0 chr5 26128972 26129260 -176956272 + AluSq SINE Alu 2 300 -13 26 0 0 0 chr5 26129311 26129337 -176956195 + AT_rich Low_complexity Low_complexity 1 26 0 26 82 0 0 chr5 26129451 26129512 -176956020 + AT_rich Low_complexity Low_complexity 1 61 0 3821 194 30 86 chr5 26130735 26131780 -176953752 + L1MC1 LINE L1 75 1060 -5366 3504 232 63 51 chr5 26131765 26134205 -176951327 + L1MC1 LINE L1 1367 3836 -2590 * 4248 244 73 40 chr5 26134194 26135407 -176950125 + L1MC1 LINE L1 4341 5668 -945 2124 82 0 4 chr5 26135407 26135736 -176949796 + AluSc SINE Alu 2 329 0 4248 244 73 40 chr5 26135736 26136716 -176948816 + L1MC1 LINE L1 5668 6613 0 1962 150 0 0 chr5 26136764 26137051 -176948481 + AluSg SINE Alu 1 287 -23 290 141 0 16 chr5 26137051 26137115 -176948417 + (TA)n Simple_repeat Simple_repeat 2 64 0 32 81 0 0 chr5 26138160 26138234 -176947298 + AT_rich Low_complexity Low_complexity 1 74 0 2085 124 28 0 chr5 26138518 26138808 -176946724 - AluSq SINE Alu -15 298 1 33 0 0 0 chr5 26139981 26140014 -176945518 + AT_rich Low_complexity Low_complexity 1 33 0 265 286 22 11 chr5 26140419 26140510 -176945022 - MLT1J2 LTR MaLR -290 160 69 21 67 0 17 chr5 26140922 26140951 -176944581 + AT_rich Low_complexity Low_complexity 1 29 -30 5373 140 14 3 chr5 26140951 26141977 -176943555 + L1PA16 LINE L1 5128 6164 -2 21 67 0 17 chr5 26141977 26142007 -176943525 + AT_rich Low_complexity Low_complexity 29 59 0 7195 179 56 9 chr5 26142306 26143678 -176941854 + Tigger4(Zombi) DNA MER2_type 13 1448 -1283 263 188 0 0 chr5 26143675 26143723 -176941809 - Tigger4(Zombi) DNA MER2_type -1389 1342 1295 * 2954 156 27 7 chr5 26143720 26144742 -176940790 + Tigger4(Zombi) DNA MER2_type 1638 2729 -2 318 333 81 21 chr5 26144940 26145126 -176940406 + L1ME4a LINE L1 5687 5883 -238 634 321 67 8 chr5 26145148 26145388 -176940144 - MIR SINE MIR -4 258 5 240 200 0 0 chr5 26145412 26145457 -176940075 + L1MC4 LINE L1 6658 6702 -1340 225 284 23 11 chr5 26145460 26145548 -176939984 - L1MC4 LINE L1 -1339 6703 6615 33 94 0 0 chr5 26145578 26145674 -176939858 + AT_rich Low_complexity Low_complexity 1 96 0 1910 145 10 3 chr5 26146582 26146892 -176938640 - AluSx SINE Alu 0 312 1 422 138 0 0 chr5 26146992 26147072 -176938460 - L1MA3 LINE L1 0 6305 6226 23 54 0 0 chr5 26147253 26147290 -176938242 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr5 26147407 26147437 -176938095 + AT_rich Low_complexity Low_complexity 1 30 0 197 293 41 57 chr5 26147551 26147674 -176937858 + L2 LINE L2 2584 2704 -610 845 156 0 0 chr5 26147733 26147861 -176937671 - FLAM_C SINE Alu -14 129 2 23 0 0 0 chr5 26147941 26147964 -176937568 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr5 26148320 26148348 -176937184 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr5 26148804 26148831 -176936701 + AT_rich Low_complexity Low_complexity 1 27 0 422 300 25 8 chr5 26149192 26149312 -176936220 + MIR SINE MIR 30 151 -111 27 29 0 0 chr5 26151322 26151356 -176934176 + AT_rich Low_complexity Low_complexity 1 34 0 326 338 25 13 chr5 26151473 26151630 -176933902 - L2 LINE L2 0 3313 3155 285 253 63 0 chr5 26152182 26152277 -176933255 + MER52A LTR ERV1 1 101 -1654 4197 199 53 10 chr5 26152790 26154144 -176931388 + MER52A LTR ERV1 281 1755 0 3566 157 98 5 chr5 26154600 26155250 -176930282 + MER50 LTR ERV1 1 711 -23 3217 174 69 35 chr5 26156825 26157401 -176928131 - L1MA9 LINE L1 0 6312 5704 369 0 0 0 chr5 26157401 26157442 -176928090 + (TA)n Simple_repeat Simple_repeat 2 42 0 3217 174 69 35 chr5 26157442 26157602 -176927930 - L1MA9 LINE L1 -608 5704 5551 2772 100 24 40 chr5 26158325 26158776 -176926756 - MLT2A1 LTR ERVL 0 444 1 10604 92 5 5 chr5 26158776 26160227 -176925305 - HERVL-A1 LTR ERVL 0 5654 4204 8332 79 1 7 chr5 26160211 26161301 -176924231 - HERVL LTR ERVL -2766 2888 1806 * 336 122 0 0 chr5 26161311 26161360 -176924172 + HERVL LTR ERVL 3136 3184 -2470 1415 100 48 13 chr5 26161382 26161611 -176923921 - MLT2A1 LTR ERVL -207 237 1 578 14 14 0 chr5 26161740 26161811 -176923721 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 3059 43 0 0 chr5 26161970 26162339 -176923193 - L1PA3 LINE L1 0 6155 5787 671 275 45 35 chr5 26163690 26163977 -176921555 + MER67C LTR ERV1 1 290 -420 22 0 0 0 chr5 26165647 26165669 -176919863 + AT_rich Low_complexity Low_complexity 1 22 0 1452 193 119 59 chr5 26165820 26166224 -176919308 - MSTA LTR MaLR 0 428 1 1442 188 76 0 chr5 26167024 26167338 -176918194 + MER44D DNA MER2_type 1 608 -1 1049 144 17 0 chr5 26167392 26167566 -176917966 - L1PA15 LINE L1 -3 6162 5986 2640 108 8 0 chr5 26167580 26168001 -176917531 - L1PA15 LINE L1 -324 5832 5404 27 0 0 0 chr5 26168802 26168829 -176916703 + AT_rich Low_complexity Low_complexity 1 27 0 11548 186 31 30 chr5 26169506 26173142 -176912390 - L1MA8 LINE L1 0 6291 2657 1332 251 56 10 chr5 26174796 26175207 -176910325 - MER99 DNA DNA -44 784 355 990 240 65 14 chr5 26175233 26175508 -176910024 - MER99 DNA DNA -534 294 6 435 328 57 33 chr5 26176423 26176667 -176908865 - MERVL LTR ERVL -4635 1129 880 2376 201 6 46 chr5 26176678 26176957 -176908575 + MLT1D LTR MaLR 6 256 -249 2158 135 0 0 chr5 26176957 26177269 -176908263 + AluSx SINE Alu 1 312 0 2376 201 6 46 chr5 26177269 26177507 -176908025 + MLT1D LTR MaLR 256 502 -3 739 228 6 25 chr5 26178003 26178165 -176907367 - FRAM SINE Alu -17 159 1 1815 158 46 12 chr5 26178595 26178923 -176906609 + THE1C LTR MaLR 1 339 -36 1977 141 30 22 chr5 26178923 26179284 -176906248 + THE1B LTR MaLR 1 364 0 7027 113 8 16 chr5 26179284 26180319 -176905213 + THE1B-int LTR MaLR 1 1027 -553 832 145 0 0 chr5 26180318 26180449 -176905083 - THE1-int LTR MaLR -411 1169 1039 * 1778 170 13 19 chr5 26180449 26180766 -176904766 + THE1B LTR MaLR 50 364 0 231 184 0 0 chr5 26180768 26180806 -176904726 + THE1C LTR MaLR 391 428 0 * 771 309 63 53 chr5 26180806 26181184 -176904348 - MLT2F LTR ERVL -165 498 117 26 50 0 0 chr5 26181955 26181995 -176903537 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr5 26182018 26182054 -176903478 + AT_rich Low_complexity Low_complexity 1 36 0 371 320 35 59 chr5 26182836 26183039 -176902493 - LTR16A1 LTR ERVL -259 198 1 427 315 29 34 chr5 26184044 26184282 -176901250 - MERVL LTR ERVL -3145 2340 2104 1550 206 41 39 chr5 26184374 26184763 -176900769 + MLT1B LTR MaLR 1 390 0 301 235 81 101 chr5 26184879 26185028 -176900504 + LTR16A LTR ERVL 305 450 0 718 311 117 20 chr5 26185117 26185519 -176900013 - LTR16A1 LTR ERVL 0 457 17 22 0 0 0 chr5 26185807 26185829 -176899703 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr5 26186086 26186111 -176899421 + AT_rich Low_complexity Low_complexity 1 25 0 2105 138 23 0 chr5 26186161 26186629 -176898903 - L1PA16 LINE L1 -566 5600 5124 * 2501 180 24 3 chr5 26186627 26187154 -176898378 + L1PA16 LINE L1 5600 6153 -2 24 32 0 0 chr5 26187303 26187334 -176898198 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr5 26187782 26187803 -176897729 + AT_rich Low_complexity Low_complexity 1 21 0 388 329 90 8 chr5 26187831 26188065 -176897467 + L1ME4a LINE L1 5691 5943 -178 23 0 0 0 chr5 26188219 26188242 -176897290 + AT_rich Low_complexity Low_complexity 1 23 0 565 324 180 32 chr5 26188698 26189427 -176896105 + L2 LINE L2 1783 2619 -695 1501 43 0 0 chr5 26189597 26189782 -176895750 + L1PA5 LINE L1 5966 6150 -4 181 284 40 27 chr5 26189864 26189938 -176895594 + L2 LINE L2 2891 2965 -349 1817 134 31 0 chr5 26189942 26190232 -176895300 - AluSx SINE Alu -8 304 6 29 47 0 0 chr5 26190394 26190437 -176895095 + AT_rich Low_complexity Low_complexity 1 43 0 235 368 25 37 chr5 26192058 26192221 -176893311 + MIR3 SINE MIR 30 190 -18 2036 109 7 0 chr5 26193038 26193350 -176892182 - AluSx SINE Alu 0 314 1 31 0 0 0 chr5 26193488 26193519 -176892013 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr5 26194984 26195029 -176890503 + AT_rich Low_complexity Low_complexity 1 45 0 865 325 50 37 chr5 26195398 26196152 -176889380 - L1ME3A LINE L1 -114 6056 5293 278 49 0 24 chr5 26196166 26196207 -176889325 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 5526 223 56 21 chr5 26196207 26197901 -176887631 - L1PA3 LINE L1 -24 6131 4283 2282 80 10 16 chr5 26197901 26198212 -176887320 - AluY SINE Alu -2 309 1 5526 223 56 21 chr5 26198212 26198882 -176886650 - L1PA3 LINE L1 -1872 4283 3638 31 76 0 0 chr5 26199194 26199260 -176886272 + AT_rich Low_complexity Low_complexity 1 66 0 447 324 125 0 chr5 26199273 26199569 -176885963 - L1ME3A LINE L1 -1802 4344 4012 329 300 112 52 chr5 26199815 26200242 -176885290 - L1ME3A LINE L1 -2812 3334 2882 512 257 58 18 chr5 26200247 26200473 -176885059 - L1ME3A LINE L1 -3234 2912 2678 1200 274 35 44 chr5 26200576 26201010 -176884522 + LTR40a LTR ERVL 1 430 -89 269 208 129 34 chr5 26201048 26201226 -176884306 - L1ME3A LINE L1 -3577 2569 2375 22 56 0 0 chr5 26201554 26201590 -176883942 + AT_rich Low_complexity Low_complexity 1 36 0 558 242 7 0 chr5 26201592 26201745 -176883787 - L1MA10 LINE L1 -4 6330 6177 1433 258 58 7 chr5 26201817 26202362 -176883170 - L1MD2 LINE L1 -429 5737 5345 606 141 13 39 chr5 26202391 26202547 -176882985 + CT-rich Low_complexity Low_complexity 4 155 0 633 169 7 14 chr5 26202647 26202795 -176882737 + CT-rich Low_complexity Low_complexity 3 149 0 1313 216 34 3 chr5 26202797 26203088 -176882444 - AluJo SINE Alu -12 300 1 401 272 26 26 chr5 26203159 26203350 -176882182 - L1MD2 LINE L1 -1120 5026 4836 303 259 62 89 chr5 26203360 26203584 -176881948 + L1ME4a LINE L1 5799 6016 -105 22 56 0 0 chr5 26203642 26203678 -176881854 + AT_rich Low_complexity Low_complexity 1 36 0 231 61 0 0 chr5 26203752 26203785 -176881747 + (T)n Simple_repeat Simple_repeat 1 33 0 289 298 111 0 chr5 26204396 26204604 -176880928 + L1MDa LINE L1 1674 1904 -4636 246 208 83 0 chr5 26205079 26205151 -176880381 + MLT1J LTR MaLR 404 481 -30 2140 122 7 0 chr5 26205324 26205627 -176879905 - AluY SINE Alu -6 305 1 227 299 58 80 chr5 26206110 26206334 -176879198 + L1MEd LINE L1 995 1213 -4906 616 175 54 19 chr5 26206427 26206584 -176878948 + L1MA8 LINE L1 5954 6130 -161 6009 59 1 0 chr5 26207827 26208585 -176876947 + L1PA7 LINE L1 5392 6150 -4 21 0 0 0 chr5 26208682 26208703 -176876829 + AT_rich Low_complexity Low_complexity 1 21 0 466 262 21 35 chr5 26208725 26208743 -176876789 - MLT1C LTR MaLR -263 204 187 1798 155 7 10 chr5 26208743 26209053 -176876479 - AluSx SINE Alu -3 309 1 466 262 21 35 chr5 26209053 26209179 -176876353 - MLT1C LTR MaLR -280 187 62 23 0 0 0 chr5 26211330 26211353 -176874179 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr5 26211706 26211738 -176873794 + AT_rich Low_complexity Low_complexity 1 32 0 378 134 60 0 chr5 26211959 26212026 -176873506 - L1MA3 LINE L1 -342 5963 5893 2007 166 6 11 chr5 26212027 26212383 -176873149 + L1P LINE L1 3882 4235 -1911 330 299 40 62 chr5 26212936 26213160 -176872372 - L1M4 LINE L1 -1899 4247 4029 21 0 0 0 chr5 26213176 26213197 -176872335 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr5 26213494 26213516 -176872016 + (TC)n Simple_repeat Simple_repeat 2 23 0 452 277 43 28 chr5 26213531 26213672 -176871860 - LTR27 LTR ERV1 0 636 494 2281 185 129 13 chr5 26213676 26214234 -176871298 - LTR28 LTR ERV1 -444 576 1 23 0 0 0 chr5 26214966 26214989 -176870543 + AT_rich Low_complexity Low_complexity 1 23 0 1862 157 0 20 chr5 26215051 26215351 -176870181 - AluSx SINE Alu -16 296 3 27 49 0 0 chr5 26216770 26216811 -176868721 + AT_rich Low_complexity Low_complexity 1 41 0 189 281 0 56 chr5 26218831 26218920 -176866612 - L2 LINE L2 -214 3099 3016 4245 107 6 2 chr5 26219257 26219881 -176865651 - L1PA13 LINE L1 0 6163 5537 226 209 0 0 chr5 26221138 26221181 -176864351 + GA-rich Low_complexity Low_complexity 2 44 0 514 135 10 19 chr5 26221486 26221590 -176863942 + L1MA9 LINE L1 6191 6293 -19 21 36 0 0 chr5 26221590 26221618 -176863914 + AT_rich Low_complexity Low_complexity 1 28 0 679 200 18 5 chr5 26221658 26221817 -176863715 + L1MA8 LINE L1 6131 6298 -2 1340 239 18 34 chr5 26223241 26223621 -176861911 - MLT1A2 LTR MaLR 0 374 1 282 295 50 43 chr5 26224568 26224707 -176860825 - MIR SINE MIR -50 212 73 259 17 17 83 chr5 26224953 26225013 -176860519 + (TAA)n Simple_repeat Simple_repeat 3 58 0 2276 96 3 0 chr5 26225016 26225319 -176860213 - AluY SINE Alu -7 304 1 299 330 0 9 chr5 26225350 26225378 -176860154 + CT-rich Low_complexity Low_complexity 3 30 -77 2045 130 7 0 chr5 26225378 26225671 -176859861 - AluSc SINE Alu -14 295 1 299 330 0 9 chr5 26225671 26225748 -176859784 + CT-rich Low_complexity Low_complexity 30 107 0 3044 171 8 64 chr5 26226309 26226964 -176858568 - LTR35 LTR ERV1 0 618 1 1907 157 7 0 chr5 26226990 26227312 -176858220 - AluSx SINE Alu 0 324 1 334 145 0 16 chr5 26227654 26227716 -176857816 - LTR35-int LTR ERV1 -277 6054 5994 8261 193 58 71 chr5 26227796 26228983 -176856549 - MER57-int LTR ERV1 -437 5421 4400 2125 168 100 72 chr5 26228983 26229555 -176855977 - LTR4 LTR ERV1 0 588 1 8261 193 58 71 chr5 26229555 26230907 -176854625 - MER57-int LTR ERV1 -1458 4400 3031 2862 208 55 23 chr5 26230907 26230964 -176854568 + LTR58 LTR ERV1 1 55 -624 2198 181 15 0 chr5 26230964 26231361 -176854171 + MER57A LTR ERV1 1 403 0 2862 208 55 23 chr5 26231361 26231958 -176853574 + LTR58 LTR ERV1 55 676 -3 1121 150 8 69 chr5 26232030 26232290 -176853242 - MER57-int LTR ERV1 -2945 3001 2758 6306 179 6 62 chr5 26232340 26233660 -176851872 - MER57-int LTR ERV1 -3838 2108 863 350 284 78 50 chr5 26234019 26234237 -176851295 - MER57-int LTR ERV1 -6247 1290 1067 3428 159 6 54 chr5 26234256 26234781 -176850751 - LTR35 LTR ERV1 0 618 128 3487 137 73 2 chr5 26234781 26235372 -176850160 + MER41B LTR ERV1 3 635 0 3428 159 6 54 chr5 26235372 26235495 -176850037 - LTR35 LTR ERV1 -490 128 1 186 212 0 0 chr5 26236240 26236273 -176849259 - MER5B DNA MER1_type -145 33 1 1136 184 11 0 chr5 26236277 26236467 -176849065 - LTR1 LTR ERV1 0 785 594 5850 132 182 84 chr5 26236467 26238008 -176847524 + pTR5 LTR ERV1 747 2438 0 2756 133 52 68 chr5 26238018 26238590 -176846942 - LTR1 LTR ERV1 -191 594 32 22 0 0 0 chr5 26239055 26239077 -176846455 + AT_rich Low_complexity Low_complexity 1 22 0 528 212 97 88 chr5 26239214 26239597 -176845935 + LTR35 LTR ERV1 196 556 0 * 565 240 0 0 chr5 26239597 26239699 -176845833 + MER58B DNA MER1_type 240 341 0 497 274 96 0 chr5 26240051 26240197 -176845335 + MER68 LTR ERV1 55 214 -348 42059 32 25 4 chr5 26240244 26246269 -176839263 - L1PA3 LINE L1 -1 6154 2 610 303 51 37 chr5 26246281 26246575 -176838957 + MER68 LTR ERV1 261 558 -4 262 240 0 0 chr5 26248129 26248179 -176837353 + MLT2F LTR ERVL 2 51 -612 1033 248 72 30 chr5 26248240 26248584 -176836948 - MLT1A1 LTR MaLR 0 428 19 305 121 0 69 chr5 26248641 26248699 -176836833 + MLT1E1 LTR MaLR 193 246 -408 22 35 0 0 chr5 26248773 26248802 -176836730 + AT_rich Low_complexity Low_complexity 1 29 0 2169 117 0 0 chr5 26248926 26249242 -176836290 + AluSx SINE Alu 1 316 0 2068 107 21 0 chr5 26249457 26249748 -176835784 - AluSp SINE Alu -16 297 1 771 198 86 26 chr5 26251043 26251158 -176834374 + L1MD3 LINE L1 7732 7839 -156 231 103 0 0 chr5 26251158 26251197 -176834335 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 771 198 86 26 chr5 26251197 26251313 -176834219 + L1MD3 LINE L1 7839 7977 -18 307 330 105 38 chr5 26251315 26251582 -176833950 - L3 LINE CR1 -164 1413 1129 1088 201 85 63 chr5 26251943 26252321 -176833211 - MLT1B LTR MaLR -4 386 1 1753 241 21 17 chr5 26252321 26252741 -176832791 - MLT1B-int LTR MaLR 0 1735 1314 294 281 22 0 chr5 26252828 26252917 -176832615 - MLT1B-int LTR MaLR -969 766 676 1949 232 4 24 chr5 26253059 26253528 -176832004 - MLT1B-int LTR MaLR -649 722 263 664 117 9 9 chr5 26253522 26253633 -176831899 - MLT1B-int LTR MaLR -1620 115 5 * 696 253 152 86 chr5 26253638 26253839 -176831693 - MLT2B1 LTR ERVL -1 519 333 2459 63 0 0 chr5 26253839 26254141 -176831391 - AluY SINE Alu -9 302 1 696 253 152 86 chr5 26254141 26254426 -176831106 - MLT2B1 LTR ERVL -187 333 1 750 324 87 35 chr5 26255396 26256245 -176829287 - L1MEd LINE L1 -4549 1580 682 23 33 0 0 chr5 26256340 26256370 -176829162 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr5 26256780 26256802 -176828730 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr5 26256829 26256853 -176828679 + AT_rich Low_complexity Low_complexity 1 24 0 304 314 160 24 chr5 26256854 26257230 -176828302 - L1 LINE L1 -2830 3316 2890 1595 219 76 3 chr5 26257401 26257770 -176827762 - MSTD LTR MaLR 0 396 1 2338 169 5 28 chr5 26257946 26258383 -176827149 - Tigger2a DNA MER2_type -7 427 1 1711 173 133 13 chr5 26258529 26258911 -176826621 - MSTA LTR MaLR 0 428 1 782 252 50 90 chr5 26258982 26259383 -176826149 + MLT1B LTR MaLR 1 385 -5 817 189 17 63 chr5 26259414 26259589 -176825943 + FAM SINE Alu 1 167 -8 202 235 0 51 chr5 26259749 26259847 -176825685 + A-rich Low_complexity Low_complexity 5 97 0 1309 226 82 15 chr5 26261614 26261954 -176823578 + MLT1A1 LTR MaLR 1 363 -2 1396 177 157 20 chr5 26262756 26263100 -176822432 + MSTB LTR MaLR 1 391 -35 7749 98 12 5 chr5 26263371 26265338 -176820194 + L1PA7 LINE L1 4145 6146 -8 450 0 0 0 chr5 26265342 26265392 -176820140 + (GAA)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chr5 26265394 26265418 -176820114 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr5 26266105 26266129 -176819403 + AT_rich Low_complexity Low_complexity 1 24 0 268 196 11 63 chr5 26267216 26267405 -176818127 + (TA)n Simple_repeat Simple_repeat 1 179 0 192 255 20 0 chr5 26267619 26267670 -176817862 - MIR SINE MIR -55 207 156 26 50 0 0 chr5 26269164 26269204 -176816328 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr5 26269809 26269837 -176815695 + AT_rich Low_complexity Low_complexity 1 28 0 35 41 0 0 chr5 26270255 26270304 -176815228 + AT_rich Low_complexity Low_complexity 1 49 0 45 19 0 0 chr5 26272664 26272716 -176812816 + AT_rich Low_complexity Low_complexity 1 52 0 1551 126 7 96 chr5 26274338 26274640 -176810892 + AluSx SINE Alu 1 275 -37 29 0 0 0 chr5 26274650 26274679 -176810853 + AT_rich Low_complexity Low_complexity 1 29 0 1918 143 52 25 chr5 26275485 26275850 -176809682 + THE1C LTR MaLR 1 375 0 2943 28 11 16 chr5 26277577 26277963 -176807569 - L1PA4 LINE L1 0 6155 5794 1943 142 11 0 chr5 26277965 26278247 -176807285 - AluSq SINE Alu -28 285 1 235 257 73 92 chr5 26278845 26279063 -176806469 + L2 LINE L2 3100 3313 0 21 0 0 0 chr5 26279873 26279894 -176805638 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr5 26279973 26280019 -176805513 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1742 259 33 55 chr5 26280051 26280629 -176804903 - MLT1E2 LTR MaLR -25 601 37 285 135 0 0 chr5 26280629 26280681 -176804851 + (TG)n Simple_repeat Simple_repeat 2 53 0 186 300 20 0 chr5 26281153 26281203 -176804329 + L2 LINE L2 3179 3229 -84 20548 202 38 10 chr5 26281220 26281833 -176803699 - L1MA3 LINE L1 0 7724 7130 1493 102 0 23 chr5 26281833 26282049 -176803483 - AluSq SINE Alu -5 308 98 20548 202 38 10 chr5 26282049 26284381 -176801151 - L1MA3 LINE L1 -594 7130 4864 189 0 0 0 chr5 26284381 26284402 -176801130 + (TTA)n Simple_repeat Simple_repeat 2 22 0 20548 202 38 10 chr5 26284402 26284665 -176800867 - L1MA3 LINE L1 -2860 4864 4610 2224 114 0 3 chr5 26284665 26284963 -176800569 - AluSx SINE Alu -15 297 1 20548 202 38 10 chr5 26284963 26285610 -176799922 - L1MA3 LINE L1 -3114 4610 3982 2107 138 0 0 chr5 26285610 26285908 -176799624 - AluSc SINE Alu -11 298 1 20548 202 38 10 chr5 26285908 26286966 -176798566 - L1MA3 LINE L1 -3742 3982 2955 2566 65 0 0 chr5 26286966 26287272 -176798260 - AluY SINE Alu -5 306 1 20548 202 38 10 chr5 26287272 26288357 -176797175 - L1MA3 LINE L1 -4769 2955 1902 414 0 0 0 chr5 26288357 26288403 -176797129 + (TTA)n Simple_repeat Simple_repeat 2 47 0 20548 202 38 10 chr5 26288403 26289798 -176795734 - L1MA3 LINE L1 -5822 1902 30 421 287 51 72 chr5 26289863 26290100 -176795432 - HERVL74 LTR ERVL -4780 905 674 405 322 110 49 chr5 26290121 26290550 -176794982 - L1 LINE L1 -808 5338 4884 237 234 47 16 chr5 26290781 26290845 -176794687 - MIR SINE MIR -64 144 79 1494 314 87 50 chr5 26291148 26292043 -176793489 - HERVL74 LTR ERVL -4755 930 3 1795 221 13 66 chr5 26292060 26292530 -176793002 - MER74C LTR ERVL -12 448 4 548 246 7 7 chr5 26292534 26292676 -176792856 - L1MA10 LINE L1 -14 6320 6179 506 333 56 0 chr5 26293616 26293811 -176791721 - L1MC/D LINE L1 -2144 5664 5459 5212 41 2 2 chr5 26293813 26294445 -176791087 + L1PA5 LINE L1 5515 6146 -8 358 267 9 9 chr5 26294466 26294571 -176790961 + ERVL LTR ERVL 1755 1859 -3905 2675 302 46 48 chr5 26294696 26295958 -176789574 + ERVL LTR ERVL 2054 3317 -2447 5638 37 0 3 chr5 26295958 26296635 -176788897 - L1PA3 LINE L1 -3 6152 5478 2675 302 46 48 chr5 26296635 26296708 -176788824 + ERVL LTR ERVL 3317 3389 -2375 1786 216 58 58 chr5 26296708 26296958 -176788574 + MLT1D LTR MaLR 1 250 -255 2141 134 0 3 chr5 26296958 26297271 -176788261 + AluSq SINE Alu 1 312 -1 186 43 0 0 chr5 26297271 26297294 -176788238 + (GA)n Simple_repeat Simple_repeat 2 24 0 1786 216 58 58 chr5 26297294 26297546 -176787986 + MLT1D LTR MaLR 248 504 -1 2675 302 46 48 chr5 26297546 26297620 -176787912 + ERVL LTR ERVL 3389 3461 -2303 186 143 0 0 chr5 26297635 26297670 -176787862 + (TA)n Simple_repeat Simple_repeat 1 35 0 702 331 18 6 chr5 26298178 26298509 -176787023 + ERVL LTR ERVL 3953 4296 -1190 268 279 33 49 chr5 26298572 26298694 -176786838 + ERVL LTR ERVL 4438 4557 -928 364 359 57 26 chr5 26298796 26299253 -176786279 + ERVL LTR ERVL 4724 5194 -570 226 315 136 19 chr5 26299874 26300087 -176785445 + LTR33 LTR ERVL 284 521 0 42 73 0 24 chr5 26302356 26302480 -176783052 + AT_rich Low_complexity Low_complexity 1 121 0 2062 130 36 0 chr5 26302724 26303025 -176782507 + AluSx SINE Alu 1 312 0 907 170 64 148 chr5 26304088 26304418 -176781114 - AluJb SINE Alu 0 302 1 542 308 75 48 chr5 26304522 26304960 -176780572 + L1ME3 LINE L1 5258 5707 -455 391 253 25 0 chr5 26305043 26305118 -176780414 - Tigger3b DNA MER2_type 0 1232 1156 6536 214 135 14 chr5 26305118 26306682 -176778850 + MER52A LTR ERV1 3 1755 0 5684 163 60 12 chr5 26306685 26307791 -176777741 - Tigger3b DNA MER2_type -72 1159 1 1831 164 0 0 chr5 26308120 26308395 -176777137 - AluSx SINE Alu -37 275 1 1555 280 51 17 chr5 26308405 26309580 -176775952 + L1ME1 LINE L1 2058 3235 -2980 1068 271 96 11 chr5 26309552 26310199 -176775333 + L1ME1 LINE L1 5176 5879 -356 * 423 274 28 65 chr5 26310255 26310503 -176775029 + L1ME1 LINE L1 5982 6220 -15 2315 148 14 5 chr5 26310668 26311039 -176774493 - THE1C LTR MaLR 0 375 2 9367 142 40 7 chr5 26311040 26312569 -176772963 - THE1C-int LTR MaLR 0 1580 2 2172 159 19 5 chr5 26312570 26312940 -176772592 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr5 26313432 26313453 -176772079 + AT_rich Low_complexity Low_complexity 1 21 0 659 311 53 6 chr5 26313611 26313722 -176771810 + L1ME3 LINE L1 5706 5810 -352 258 32 0 0 chr5 26313722 26313753 -176771779 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 659 311 53 6 chr5 26313753 26313963 -176771569 + L1ME3 LINE L1 5810 6042 -120 270 334 30 25 chr5 26314490 26314855 -176770677 + L1M4 LINE L1 4621 4987 -1159 405 300 72 22 chr5 26314941 26315164 -176770368 + L1M4 LINE L1 5123 5356 -790 22 0 0 0 chr5 26315480 26315502 -176770030 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr5 26316506 26316527 -176769005 + AT_rich Low_complexity Low_complexity 1 21 0 598 263 74 29 chr5 26316969 26317212 -176768320 - L1MCa LINE L1 -4846 1580 1327 2960 120 20 2 chr5 26317433 26317876 -176767656 + MLT2A2 LTR ERVL 1 451 -2 35000 108 10 8 chr5 26317879 26323588 -176761944 + ERVL-A2 LTR ERVL 2 5654 0 2786 117 25 0 chr5 26323588 26323991 -176761541 + MLT2A2 LTR ERVL 1 413 -40 225 186 0 0 chr5 26323999 26324069 -176761463 + (TA)n Simple_repeat Simple_repeat 2 71 0 259 98 106 0 chr5 26324148 26324280 -176761252 + (TA)n Simple_repeat Simple_repeat 1 146 0 289 135 58 0 chr5 26324286 26324338 -176761194 + MLT2A2 LTR ERVL 390 444 0 409 283 22 36 chr5 26324341 26324564 -176760968 - L1MDa LINE L1 -3302 3080 2861 24 32 0 0 chr5 26324587 26324618 -176760914 + AT_rich Low_complexity Low_complexity 1 31 0 336 134 25 168 chr5 26324775 26324894 -176760638 - L1ME LINE L1 -449 5721 5620 7462 36 3 0 chr5 26324907 26325959 -176759573 - L1PA4 LINE L1 -3 6152 5100 290 292 67 11 chr5 26326033 26326211 -176759321 - L1MDa LINE L1 -3611 2771 2584 511 300 100 30 chr5 26327398 26327768 -176757764 - L1MDa LINE L1 -4447 1935 1540 1171 236 134 52 chr5 26327782 26328243 -176757289 + MLT1D LTR MaLR 1 499 -6 238 299 76 25 chr5 26328245 26328402 -176757130 - L1MDa LINE L1 -4955 1429 1265 305 329 102 27 chr5 26328479 26328850 -176756682 - L1MDa LINE L1 -5212 1351 953 2019 182 26 44 chr5 26329507 26329935 -176755597 + MSTB LTR MaLR 5 424 -2 696 270 15 20 chr5 26332201 26332401 -176753131 + MER3 DNA MER1_type 11 209 0 290 282 77 0 chr5 26333138 26333255 -176752277 - L1ME4a LINE L1 -2 6119 5994 301 330 30 46 chr5 26333313 26333510 -176752022 + L2 LINE L2 1777 1970 -1344 1966 158 135 5 chr5 26333758 26334137 -176751395 + MSTA LTR MaLR 1 428 0 487 267 103 6 chr5 26334793 26334958 -176750574 - MER5A DNA MER1_type -6 183 3 1126 178 0 35 chr5 26335185 26335387 -176750145 - MER1B DNA MER1_type -102 195 1 388 359 67 24 chr5 26335699 26335997 -176749535 - L1ME4a LINE L1 -303 5818 5508 221 163 20 0 chr5 26336214 26336263 -176749269 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 220 163 31 51 chr5 26337716 26337814 -176747718 + (TA)n Simple_repeat Simple_repeat 1 96 0 275 118 11 43 chr5 26337818 26337911 -176747621 + (TTA)n Simple_repeat Simple_repeat 3 92 0 352 124 38 97 chr5 26337925 26338110 -176747422 + (TTATA)n Simple_repeat Simple_repeat 4 177 0 388 164 51 34 chr5 26338170 26338347 -176747185 + (TA)n Simple_repeat Simple_repeat 1 180 0 28 71 0 0 chr5 26338374 26338430 -176747102 + AT_rich Low_complexity Low_complexity 1 56 0 846 215 42 67 chr5 26339293 26339676 -176745856 - MLT1A1 LTR MaLR -7 421 2 3879 240 55 43 chr5 26339677 26340733 -176744799 - MLT1A1-int LTR MaLR 0 1735 667 636 171 20 7 chr5 26340733 26340885 -176744647 - L1MA4A LINE L1 -1 6302 6149 1980 164 26 65 chr5 26340904 26341366 -176744166 - MER65A LTR ERV1 -1 444 1 2143 141 0 0 chr5 26341461 26341773 -176743759 + AluSx SINE Alu 1 312 0 25 31 0 0 chr5 26341779 26341811 -176743721 + AT_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr5 26342758 26342786 -176742746 + AT_rich Low_complexity Low_complexity 1 28 0 2611 51 0 0 chr5 26342986 26343297 -176742235 + AluY SINE Alu 1 311 0 21 36 0 0 chr5 26343606 26343634 -176741898 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr5 26344179 26344208 -176741324 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr5 26345128 26345149 -176740383 + AT_rich Low_complexity Low_complexity 1 21 0 1931 164 0 0 chr5 26345159 26345458 -176740074 + AluSx SINE Alu 1 299 -13 222 217 28 49 chr5 26345988 26346131 -176739401 + (TTA)n Simple_repeat Simple_repeat 1 140 0 276 271 62 42 chr5 26346267 26346363 -176739169 + MLT1J1 LTR MaLR 106 203 -243 3546 78 0 2 chr5 26346567 26347040 -176738492 + L1PA8 LINE L1 5701 6172 0 818 213 94 1 chr5 26347955 26348282 -176737250 - MSTD LTR MaLR 0 396 6 3259 269 89 35 chr5 26348297 26349482 -176736050 - MSTD-int LTR MaLR -17 1718 470 2011 117 7 23 chr5 26349489 26349796 -176735736 + AluSq SINE Alu 11 312 -1 432 339 70 26 chr5 26350768 26351154 -176734378 - MLT1L LTR MaLR 0 615 213 1515 152 31 66 chr5 26351336 26351648 -176733884 - AluJb SINE Alu 0 307 6 34 42 0 0 chr5 26352141 26352189 -176733343 + AT_rich Low_complexity Low_complexity 1 48 0 328 289 91 47 chr5 26352345 26352598 -176732934 + L2 LINE L2 3050 3313 0 915 119 143 6 chr5 26352999 26353167 -176732365 - THE1B LTR MaLR -173 191 1 5939 251 97 30 chr5 26353186 26355985 -176729547 + L1MA4A LINE L1 174 3196 -4013 1448 157 106 40 chr5 26355987 26356337 -176729195 - THE1C LTR MaLR -2 373 1 1576 119 26 22 chr5 26356337 26356605 -176728927 - THE1C-int LTR MaLR 0 1580 1312 1984 134 0 3 chr5 26356607 26356897 -176728635 + AluSc SINE Alu 2 290 -19 889 94 8 24 chr5 26356922 26357049 -176728483 - THE1C-int LTR MaLR -253 1327 1203 4685 157 68 48 chr5 26357049 26358010 -176727522 - THE1C-int LTR MaLR -598 982 3 1568 175 57 33 chr5 26358012 26358378 -176727154 - THE1C LTR MaLR 0 375 1 378 191 2 0 chr5 26358378 26358466 -176727066 + L1MA4A LINE L1 3192 3280 -3928 5208 226 28 21 chr5 26358469 26359771 -176725761 + L1PA10 LINE L1 1 1140 -4735 1149 73 0 0 chr5 26359778 26359952 -176725580 + AluSc SINE Alu 146 319 0 7163 205 14 11 chr5 26359966 26361523 -176724009 + L1PA10 LINE L1 1338 2899 -3562 * 9246 146 40 8 chr5 26361516 26362299 -176723233 + L1PA10 LINE L1 4012 4768 -1715 207 0 0 0 chr5 26362299 26362322 -176723210 + (TAA)n Simple_repeat Simple_repeat 2 24 0 9246 146 40 8 chr5 26362322 26363444 -176722088 + L1PA10 LINE L1 4768 6012 -471 1698 179 3 17 chr5 26363444 26363745 -176721787 + AluSx SINE Alu 1 297 -15 9246 146 40 8 chr5 26363745 26364210 -176721322 + L1PA10 LINE L1 6012 6461 -22 204 40 0 0 chr5 26364211 26364236 -176721296 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 25 0 0 0 chr5 26364393 26364418 -176721114 + AT_rich Low_complexity Low_complexity 1 25 0 11179 200 43 13 chr5 26364655 26365554 -176719978 + L1MA4A LINE L1 3275 4146 -3219 216 0 0 0 chr5 26365554 26365578 -176719954 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 11179 200 43 13 chr5 26365578 26368627 -176716905 + L1MA4A LINE L1 4146 7355 -10 2119 68 0 0 chr5 26369169 26369433 -176716099 - AluY SINE Alu -47 264 1 29 78 0 0 chr5 26369569 26369633 -176715899 + AT_rich Low_complexity Low_complexity 1 64 0 1298 190 11 144 chr5 26370112 26370585 -176714947 + MLT2D LTR ERVL 5 414 0 187 356 127 50 chr5 26370795 26371370 -176714162 - L2 LINE L2 -340 2974 2356 247 345 48 44 chr5 26371840 26372069 -176713463 + L1MC5 LINE L1 7668 7897 -64 28 105 0 0 chr5 26373144 26373249 -176712283 + AT_rich Low_complexity Low_complexity 1 105 0 2158 104 0 23 chr5 26374163 26374472 -176711060 + AluSx SINE Alu 1 302 -10 21 57 0 0 chr5 26374582 26374617 -176710915 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr5 26375059 26375080 -176710452 + AT_rich Low_complexity Low_complexity 1 21 0 1540 203 36 36 chr5 26375186 26375576 -176709956 + MLT1B LTR MaLR 1 390 0 309 51 0 0 chr5 26375926 26375965 -176709567 + (TA)n Simple_repeat Simple_repeat 2 40 0 265 273 66 71 chr5 26376718 26376901 -176708631 - L2 LINE L2 -449 2865 2684 294 29 0 0 chr5 26376905 26376940 -176708592 + (CA)n Simple_repeat Simple_repeat 2 36 0 1696 197 28 28 chr5 26377372 26377762 -176707770 + MLT1B LTR MaLR 1 390 0 27 62 0 0 chr5 26378126 26378174 -176707358 + AT_rich Low_complexity Low_complexity 1 48 0 368 342 74 19 chr5 26378204 26378419 -176707113 - MIR SINE MIR -19 243 15 2218 114 7 0 chr5 26378426 26378724 -176706808 - AluSc SINE Alu -9 300 1 1767 152 0 0 chr5 26378907 26379170 -176706362 + AluSx SINE Alu 9 271 -41 225 65 0 0 chr5 26379183 26379214 -176706318 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1862 197 112 14 chr5 26379407 26379843 -176705689 - MLT1D LTR MaLR 0 505 27 2067 140 48 28 chr5 26380141 26380498 -176705034 + THE1B LTR MaLR 1 364 0 246 175 48 0 chr5 26381587 26381650 -176703882 - L1MA7 LINE L1 -459 5832 5767 2101 148 8 78 chr5 26381650 26381686 -176703846 + L1MA7 LINE L1 5833 5870 -421 1877 154 133 13 chr5 26381686 26382068 -176703464 + MSTA LTR MaLR 1 428 0 8718 152 19 36 chr5 26382069 26383674 -176701858 + MSTA-int LTR MaLR 3 1580 0 1639 167 159 8 chr5 26383674 26384046 -176701486 + MSTA LTR MaLR 1 428 0 2101 148 8 78 chr5 26384046 26384480 -176701052 + L1MA7 LINE L1 5868 6273 -18 28 48 0 0 chr5 26384490 26384532 -176701000 + AT_rich Low_complexity Low_complexity 1 42 0 1617 188 3 29 chr5 26384665 26384973 -176700559 - AluJb SINE Alu -10 302 3 309 361 101 27 chr5 26385561 26386140 -176699392 + L2 LINE L2 2653 3313 0 195 146 0 0 chr5 26387148 26387189 -176698343 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr5 26387746 26387775 -176697757 + AT_rich Low_complexity Low_complexity 1 29 0 3495 19 0 9 chr5 26387823 26388244 -176697288 - L1PA2 LINE L1 -2 6153 5737 285 57 0 0 chr5 26388244 26388279 -176697253 + L1P LINE L1 4217 4251 -1895 1984 131 3 0 chr5 26388307 26388597 -176696935 + AluSx SINE Alu 1 291 -21 393 22 0 0 chr5 26388611 26388657 -176696875 + (TA)n Simple_repeat Simple_repeat 1 46 0 294 29 0 0 chr5 26388656 26388691 -176696841 + (CA)n Simple_repeat Simple_repeat 2 36 0 * 1846 139 17 0 chr5 26389086 26389373 -176696159 + AluSx SINE Alu 1 292 -20 267 140 0 0 chr5 26391148 26391198 -176694334 + (CA)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chr5 26391683 26391711 -176693821 + AT_rich Low_complexity Low_complexity 1 28 0 324 314 21 64 chr5 26392182 26392370 -176693162 + L2 LINE L2 3117 3296 -17 1038 213 15 56 chr5 26393811 26394079 -176691453 + AluJb SINE Alu 45 301 -11 233 239 11 125 chr5 26394258 26394434 -176691098 + L2 LINE L2 1790 1945 -1369 2313 91 3 0 chr5 26394584 26394892 -176690640 - AluY SINE Alu -2 309 1 199 320 0 0 chr5 26394947 26394997 -176690535 + L2 LINE L2 3217 3266 -6 486 253 188 6 chr5 26395013 26395183 -176690349 + MER52A LTR ERV1 1 201 -1554 * 3820 217 115 17 chr5 26395171 26396066 -176689466 + MER52A LTR ERV1 360 1342 -413 1466 101 5 5 chr5 26396066 26396283 -176689249 - pTR5 LTR ERV1 -2050 388 172 283 224 31 20 chr5 26396286 26396384 -176689148 - LTR30 LTR ERV1 -80 642 544 3847 126 62 101 chr5 26396388 26397372 -176688160 - pTR5 LTR ERV1 -417 2021 797 2236 199 34 2 chr5 26397372 26397840 -176687692 + MER52A LTR ERV1 1272 1754 -1 1836 151 39 36 chr5 26398066 26398430 -176687102 + MER47A DNA MER2_type 2 366 0 1203 256 87 76 chr5 26399616 26400284 -176685248 + L1MD2 LINE L1 5669 6343 -16 293 238 119 31 chr5 26400616 26400776 -176684756 + L1 LINE L1 4093 4266 -1880 1274 236 4 7 chr5 26400890 26401166 -176684366 + AluJo SINE Alu 1 275 -37 367 262 46 46 chr5 26401269 26401532 -176684000 + L1ME LINE L1 4582 4844 -1302 288 294 7 85 chr5 26401766 26401919 -176683613 + MLT1H LTR MaLR 67 207 -342 260 209 134 0 chr5 26402118 26402185 -176683347 + MLT1G1 LTR MaLR 489 564 -31 235 348 18 0 chr5 26402380 26402544 -176682988 + L1ME LINE L1 5268 5434 -728 * 682 263 110 32 chr5 26402530 26402923 -176682609 + L1ME3A LINE L1 5368 5751 -411 419 278 57 36 chr5 26402962 26403210 -176682322 + L1ME3A LINE L1 5888 6140 -30 3679 182 18 36 chr5 26403264 26404049 -176681483 + L1 LINE L1 3514 4284 -1862 1612 249 45 66 chr5 26504065 26504579 -176580953 + MER77 LTR ERV1 101 603 -2 447 19 0 0 chr5 26505203 26505255 -176580277 + (TA)n Simple_repeat Simple_repeat 2 53 0 312 212 15 0 chr5 26505377 26505443 -176580089 - ALR/Alpha Satellite centromeric -33 138 72 7229 61 127 7 chr5 26505443 26506472 -176579060 + L1P LINE L1 4 1156 -4990 512 323 5 0 chr5 26506879 26507096 -176578436 - L1M4 LINE L1 -3578 2568 2351 939 106 17 12 chr5 26507172 26507922 -176577610 + HSATII Satellite Satellite 1 753 -1 1114 124 4 10 chr5 26507949 26509496 -176576036 + HSATII Satellite Satellite 1 1538 -8 243 157 0 0 chr5 26509507 26509558 -176575974 + HSATII Satellite Satellite 1 51 -119 616 122 0 40 chr5 26509658 26509806 -176575726 - HSATII Satellite Satellite -28 142 1 849 91 15 15 chr5 26509866 26510069 -176575463 - HSATII Satellite Satellite -1 203 1 507 95 0 0 chr5 26510081 26510155 -176575377 - HSATII Satellite Satellite -76 94 21 1036 129 25 4 chr5 26510175 26510893 -176574639 - HSATII Satellite Satellite -7 733 1 651 170 0 0 chr5 26510929 26511082 -176574450 - HSATII Satellite Satellite 0 170 18 1220 100 26 11 chr5 26511100 26511643 -176573889 - HSATII Satellite Satellite 0 551 1 944 121 16 19 chr5 26511666 26512465 -176573067 - HSATII Satellite Satellite -23 796 1 1011 120 13 7 chr5 26512567 26513909 -176571623 + HSATII Satellite Satellite 1 1350 -92 993 131 9 11 chr5 26513926 26514766 -176570766 + HSATII Satellite Satellite 1 838 0 830 123 0 18 chr5 26514794 26514957 -176570575 + HSATII Satellite Satellite 7 166 -4 888 129 8 18 chr5 26514996 26516160 -176569372 + HSATII Satellite Satellite 1 1152 -35 853 114 0 34 chr5 26516173 26516348 -176569184 + HSATII Satellite Satellite 2 170 0 994 126 18 17 chr5 26516373 26517196 -176568336 + HSATII Satellite Satellite 1 823 -9 1089 117 9 9 chr5 26517231 26517548 -176567984 + HSATII Satellite Satellite 1 317 0 647 89 57 0 chr5 26517560 26517684 -176567848 + HSATII Satellite Satellite 20 150 -20 801 122 21 9 chr5 26517784 26518114 -176567418 + HSATII Satellite Satellite 1 334 -1 1143 85 26 13 chr5 26518144 26518600 -176566932 + HSATII Satellite Satellite 1 461 -1 1059 121 1 16 chr5 26518637 26519369 -176566163 + HSATII Satellite Satellite 1 721 -17 905 124 9 13 chr5 26519382 26519855 -176565677 + HSATII Satellite Satellite 1 471 0 962 147 3 0 chr5 26519881 26520269 -176565263 + HSATII Satellite Satellite 1 389 0 1053 130 5 0 chr5 26520306 26521119 -176564413 + HSATII Satellite Satellite 1 817 -105 1176 123 9 11 chr5 26521165 26523030 -176562502 + HSATII Satellite Satellite 1 1860 -50 1061 115 4 10 chr5 26523041 26523736 -176561796 + HSATII Satellite Satellite 1 691 -88 1131 105 13 8 chr5 26523841 26525260 -176560272 + HSATII Satellite Satellite 1 1425 0 962 132 13 0 chr5 26525276 26525737 -176559795 + HSATII Satellite Satellite 1 466 0 821 129 13 17 chr5 26525786 26526303 -176559229 + HSATII Satellite Satellite 1 514 -112 895 103 0 34 chr5 26526356 26526531 -176559001 + HSATII Satellite Satellite 1 169 -1 1041 112 10 19 chr5 26526554 26527636 -176557896 + HSATII Satellite Satellite 1 1072 0 974 130 3 19 chr5 26527655 26530162 -176555370 + HSATII Satellite Satellite 1 2465 -1 983 103 9 13 chr5 26530187 26530651 -176554881 + HSATII Satellite Satellite 1 462 -10 1086 129 11 8 chr5 26530662 26533832 -176551700 + HSATII Satellite Satellite 1 3180 0 1106 115 4 11 chr5 26533973 26535064 -176550468 + HSATII Satellite Satellite 1 1083 0 972 114 0 0 chr5 26535093 26535260 -176550272 + HSATII Satellite Satellite 4 170 0 1089 115 0 4 chr5 26535287 26535941 -176549591 + HSATII Satellite Satellite 1 651 -116 1068 123 18 13 chr5 26535959 26537641 -176547891 + HSATII Satellite Satellite 1 1690 0 1097 112 0 13 chr5 26537667 26539050 -176546482 + HSATII Satellite Satellite 1 1365 -7 447 215 0 0 chr5 26539033 26539154 -176546378 + (CACTC)n Simple_repeat Simple_repeat 4 124 0 * 498 70 0 0 chr5 26539233 26539304 -176546228 + (CATTC)n Simple_repeat Simple_repeat 5 75 0 962 121 4 17 chr5 26539681 26540394 -176545138 + HSATII Satellite Satellite 1 703 -1 1091 117 6 23 chr5 26540409 26541342 -176544190 + HSATII Satellite Satellite 1 916 0 186 143 0 0 chr5 26541379 26541414 -176544118 + HSATII Satellite Satellite 10 44 -126 1110 118 12 13 chr5 26541442 26542325 -176543207 + HSATII Satellite Satellite 1 881 0 539 141 70 0 chr5 26542341 26542483 -176543049 + HSATII Satellite Satellite 1 152 -18 767 111 0 21 chr5 26542500 26542644 -176542888 + HSATII Satellite Satellite 30 170 0 692 126 63 0 chr5 26542660 26542819 -176542713 + HSATII Satellite Satellite 1 169 -1 763 106 62 0 chr5 26542859 26543019 -176542513 + HSATII Satellite Satellite 1 170 0 989 130 9 13 chr5 26543041 26545715 -176539817 + HSATII Satellite Satellite 1 2662 0 1041 130 0 12 chr5 26545733 26546210 -176539322 + HSATII Satellite Satellite 1 471 0 1052 138 8 11 chr5 26546229 26547891 -176537641 + HSATII Satellite Satellite 1 1658 -39 857 115 0 19 chr5 26547907 26548063 -176537469 + HSATII Satellite Satellite 1 153 -17 851 160 11 0 chr5 26548090 26548360 -176537172 + HSATII Satellite Satellite 1 273 -93 950 116 1 14 chr5 26548378 26549285 -176536247 + HSATII Satellite Satellite 1 895 -35 1324 153 3 1 chr5 26549387 26558342 -176527190 + ALR/Alpha Satellite centromeric 1 8972 -50 1119 152 3 0 chr5 26558442 26560271 -176525261 + ALR/Alpha Satellite centromeric 1 1833 -57 1144 155 5 0 chr5 26560382 26564431 -176521101 - ALR/Alpha Satellite centromeric 0 4065 1 1109 163 4 1 chr5 26564539 26574685 -176510847 - ALR/Alpha Satellite centromeric 0 10175 1 34734 29 0 1 chr5 26574701 26579669 -176505863 - L1HS LINE L1 -1 6154 1191 775 106 21 0 chr5 26579809 26579950 -176505582 + HSATII Satellite Satellite 9 152 -18 844 113 17 12 chr5 26579961 26580208 -176505324 + HSATII Satellite Satellite 1 248 0 931 99 26 8 chr5 26580226 26580589 -176504943 + HSATII Satellite Satellite 1 369 -106 866 118 12 17 chr5 26580634 26581155 -176504377 + HSATII Satellite Satellite 1 518 -75 214 118 0 59 chr5 26581155 26581223 -176504309 + (CATTC)n Satellite Satellite 2 65 0 938 140 0 19 chr5 26581233 26581554 -176503978 + HSATII Satellite Satellite 1 315 -2 1065 113 0 0 chr5 26581589 26581902 -176503630 + HSATII Satellite Satellite 1 313 0 1016 119 6 17 chr5 26581921 26582637 -176502895 + HSATII Satellite Satellite 1 708 0 912 136 7 7 chr5 26582670 26583816 -176501716 + HSATII Satellite Satellite 1 1146 0 739 147 13 13 chr5 26583839 26584074 -176501458 + HSATII Satellite Satellite 1 235 -10 899 133 12 9 chr5 26584087 26584429 -176501103 + HSATII Satellite Satellite 1 343 0 1058 133 10 5 chr5 26584449 26585719 -176499813 + HSATII Satellite Satellite 1 1277 0 663 123 41 0 chr5 26585739 26585885 -176499647 + HSATII Satellite Satellite 18 169 -1 962 131 0 9 chr5 26585912 26586234 -176499298 + HSATII Satellite Satellite 1 319 -1 734 140 5 0 chr5 26586262 26586463 -176499069 + HSATII Satellite Satellite 1 202 -84 21 36 0 0 chr5 26586643 26586671 -176498861 + AT_rich Low_complexity Low_complexity 1 28 0 303 265 0 24 chr5 26587592 26587675 -176497857 + (CATA)n Simple_repeat Simple_repeat 3 83 0 26 30 0 0 chr5 26587862 26587895 -176497637 + AT_rich Low_complexity Low_complexity 1 33 0 1586 223 18 0 chr5 26587946 26588287 -176497245 + MER7A DNA MER2_type 2 346 0 587 256 130 52 chr5 26588920 26589194 -176496338 - MER77 LTR ERV1 -6 599 323 31 0 0 0 chr5 26589326 26589357 -176496175 + AT_rich Low_complexity Low_complexity 1 31 0 3899 270 73 20 chr5 26589362 26591148 -176494384 + L1MB7 LINE L1 3565 5445 -729 2317 217 53 7 chr5 26591164 26591744 -176493788 + L1MB7 LINE L1 5562 6168 -16 407 342 78 22 chr5 26591751 26592104 -176493428 - L2 LINE L2 -190 3123 2748 266 269 65 106 chr5 26592125 26592370 -176493162 + L3 LINE CR1 760 994 -583 1140 183 22 4 chr5 26593696 26593926 -176491606 + L1MB3 LINE L1 5949 6182 -1 609 330 75 54 chr5 26594035 26594740 -176490792 + L1MEc LINE L1 546 1265 -5131 710 156 31 0 chr5 26594820 26594948 -176490584 - MSTB1 LTR MaLR -300 132 1 26 64 0 0 chr5 26596181 26596228 -176489304 + AT_rich Low_complexity Low_complexity 1 47 0 247 253 44 0 chr5 26596362 26596453 -176489079 - LTR48 LTR ERV1 -48 739 645 211 148 16 16 chr5 26596453 26596514 -176489018 + (TA)n Simple_repeat Simple_repeat 1 61 0 1578 178 84 55 chr5 26596548 26596930 -176488602 - LTR49 LTR ERV1 -168 427 31 1934 133 7 4 chr5 26596930 26597208 -176488324 + AluSq SINE Alu 14 292 -21 1578 178 84 55 chr5 26597208 26597240 -176488292 - LTR49 LTR ERV1 -564 31 1 25 51 0 0 chr5 26597691 26597730 -176487802 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr5 26597934 26597966 -176487566 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr5 26598365 26598393 -176487139 + AT_rich Low_complexity Low_complexity 1 28 0 1989 227 40 71 chr5 26598402 26599024 -176486508 + MER77 LTR ERV1 1 603 -2 562 346 3 3 chr5 26600168 26600483 -176485049 - L1M4 LINE L1 -3483 2663 2349 1002 126 11 15 chr5 26600558 26602170 -176483362 + HSATII Satellite Satellite 1 1605 -3 1061 108 0 5 chr5 26602199 26602406 -176483126 + HSATII Satellite Satellite 1 205 -13 182 119 48 0 chr5 26602416 26602458 -176483074 + (CATTC)n Satellite Satellite 2 45 0 1023 139 4 8 chr5 26602464 26603219 -176482313 + HSATII Satellite Satellite 1 752 -23 1121 120 8 6 chr5 26603242 26605169 -176480363 + HSATII Satellite Satellite 1 1930 0 888 136 24 9 chr5 26605192 26605816 -176479716 + HSATII Satellite Satellite 1 633 -99 945 130 9 0 chr5 26605828 26606132 -176479400 + HSATII Satellite Satellite 1 306 -1 1032 124 6 3 chr5 26606145 26607177 -176478355 + HSATII Satellite Satellite 1 1035 -80 797 133 14 14 chr5 26607195 26607626 -176477906 + HSATII Satellite Satellite 1 431 -125 352 229 12 0 chr5 26607794 26607877 -176477655 + MER20 DNA MER1_type 133 216 -3 1817 180 46 23 chr5 26607995 26608448 -176477084 - LTR56 LTR ERV1 0 437 1 2184 192 100 11 chr5 26608636 26609178 -176476354 - LTR49 LTR ERV1 -5 590 1 25 31 0 0 chr5 26609765 26609797 -176475735 + AT_rich Low_complexity Low_complexity 1 32 0 279 267 20 27 chr5 26609948 26610094 -176475438 + (TA)n Simple_repeat Simple_repeat 2 146 0 1277 256 48 10 chr5 26611039 26611453 -176474079 - MER54A LTR ERVL 0 901 472 2159 121 74 15 chr5 26611491 26611829 -176473703 - THE1B LTR MaLR 0 364 7 1515 220 52 3 chr5 26611838 26612224 -176473308 - MER54A LTR ERVL -489 412 8 22 0 0 0 chr5 26613394 26613416 -176472116 + AT_rich Low_complexity Low_complexity 1 22 0 1447 227 4 4 chr5 26613416 26613694 -176471838 - AluJb SINE Alu -24 288 11 1068 250 50 83 chr5 26614687 26614929 -176470603 - MLT1D LTR MaLR -2 503 255 1899 143 7 7 chr5 26614929 26615223 -176470309 - AluSc SINE Alu -13 296 3 1068 250 50 83 chr5 26615223 26615496 -176470036 - MLT1D LTR MaLR -250 255 5 21 0 0 0 chr5 26615556 26615577 -176469955 + AT_rich Low_complexity Low_complexity 1 21 0 578 210 18 9 chr5 26615592 26616235 -176469297 + GA-rich Low_complexity Low_complexity 1 648 0 734 271 42 13 chr5 26616329 26616706 -176468826 - L1MCa LINE L1 -3509 2917 2530 260 273 21 35 chr5 26616775 26616918 -176468614 - L1MCa LINE L1 -5031 1395 1255 1409 229 7 7 chr5 26617155 26617448 -176468084 - MLT1A1 LTR MaLR 0 365 73 918 141 5 4 chr5 26617773 26618411 -176467121 + HSATII Satellite Satellite 1 638 -2 211 165 70 9 chr5 26618415 26618530 -176467002 + (ATTCG)n Simple_repeat Simple_repeat 4 125 0 1023 126 8 8 chr5 26618530 26620833 -176464699 + HSATII Satellite Satellite 1 2303 -11 1020 127 8 5 chr5 26620855 26622119 -176463413 + HSATII Satellite Satellite 1 1268 0 985 126 8 20 chr5 26622146 26622870 -176462662 + HSATII Satellite Satellite 1 715 -9 21 36 0 0 chr5 26623050 26623078 -176462454 + AT_rich Low_complexity Low_complexity 1 28 0 264 231 0 51 chr5 26624001 26624079 -176461453 + (CATA)n Simple_repeat Simple_repeat 3 76 0 25 31 0 0 chr5 26624272 26624304 -176461228 + AT_rich Low_complexity Low_complexity 1 32 0 1600 223 18 0 chr5 26624356 26624697 -176460835 + MER7A DNA MER2_type 2 346 0 572 257 139 32 chr5 26625329 26625603 -176459929 - MER77 LTR ERV1 -6 599 323 28 0 0 0 chr5 26625737 26625765 -176459767 + AT_rich Low_complexity Low_complexity 1 28 0 4172 267 68 19 chr5 26625774 26627571 -176457961 + L1MB7 LINE L1 3565 5445 -729 2404 220 35 8 chr5 26627586 26628178 -176457354 + L1MB7 LINE L1 5561 6168 -16 377 363 63 9 chr5 26628251 26628539 -176456993 - L2 LINE L2 -266 3047 2748 1228 164 4 4 chr5 26630134 26630360 -176455172 + L1MB3 LINE L1 5957 6182 -1 378 330 73 53 chr5 26630469 26630826 -176454706 + L1MEc LINE L1 546 909 -5487 273 270 86 39 chr5 26630830 26631167 -176454365 + L1MEc LINE L1 870 1222 -4983 648 191 30 0 chr5 26631248 26631379 -176454153 - MSTB1 LTR MaLR -297 135 1 3056 45 3 0 chr5 26632525 26632904 -176452628 - L1PA2 LINE L1 -6 6149 5770 21 36 0 0 chr5 26633082 26633110 -176452422 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr5 26633325 26633357 -176452175 + AT_rich Low_complexity Low_complexity 1 32 0 495 243 138 11 chr5 26633609 26633798 -176451734 + MER20 DNA MER1_type 4 216 -3 1821 181 47 19 chr5 26633937 26634362 -176451170 - LTR56 LTR ERV1 0 445 9 2213 189 104 11 chr5 26634554 26635094 -176450438 - LTR49 LTR ERV1 -5 590 1 21 0 0 0 chr5 26635657 26635678 -176449854 + AT_rich Low_complexity Low_complexity 1 21 0 285 273 26 19 chr5 26635828 26635982 -176449550 + (TA)n Simple_repeat Simple_repeat 2 156 0 1376 248 46 10 chr5 26636926 26637341 -176448191 - MER54A LTR ERVL 0 901 472 2130 128 74 12 chr5 26637379 26637716 -176447816 - THE1B LTR MaLR 0 364 7 1565 207 7 3 chr5 26638133 26638433 -176447099 - AluJb SINE Alu -1 311 11 943 272 49 91 chr5 26639433 26639662 -176445870 - MLT1D LTR MaLR -15 490 253 1972 134 7 0 chr5 26639662 26639953 -176445579 - AluY SINE Alu -12 299 7 943 272 49 91 chr5 26639953 26640230 -176445302 - MLT1D LTR MaLR -252 253 5 21 0 0 0 chr5 26640290 26640311 -176445221 + AT_rich Low_complexity Low_complexity 1 21 0 381 88 38 25 chr5 26640325 26640405 -176445127 + GA-rich Low_complexity Low_complexity 4 84 0 591 188 24 0 chr5 26640426 26640591 -176444941 + GA-rich Low_complexity Low_complexity 3 171 0 272 255 19 6 chr5 26640610 26640767 -176444765 + GA-rich Low_complexity Low_complexity 2 160 0 466 210 23 28 chr5 26640778 26640954 -176444578 + GA-rich Low_complexity Low_complexity 3 177 0 847 259 51 13 chr5 26641049 26641423 -176444109 - L1MEc LINE L1 -3509 2706 2319 364 296 40 62 chr5 26641463 26641639 -176443893 - L1MEc LINE L1 -4983 1413 1242 1150 160 5 1 chr5 26641847 26650917 -176434615 + ALR/Alpha Satellite centromeric 1 9108 -36 603 147 4 35 chr5 26650930 26651198 -176434334 - HSATII Satellite Satellite -50 259 1 825 113 18 18 chr5 26651213 26651381 -176434151 - HSATII Satellite Satellite -1 169 2 881 124 12 20 chr5 26651392 26652148 -176433384 - HSATII Satellite Satellite -1 749 1 1034 99 0 17 chr5 26652175 26652347 -176433185 - HSATII Satellite Satellite -1 169 1 1032 146 16 2 chr5 26652386 26653698 -176431834 - HSATII Satellite Satellite 0 1329 1 981 118 2 19 chr5 26653735 26654603 -176430929 - HSATII Satellite Satellite -1 853 1 587 164 21 0 chr5 26654623 26654763 -176430769 - HSATII Satellite Satellite -27 143 1 804 134 23 15 chr5 26654790 26655191 -176430341 - HSATII Satellite Satellite -1 404 1 1197 117 9 12 chr5 26655214 26658937 -176426595 - HSATII Satellite Satellite -39 3709 1 1065 131 8 3 chr5 26658958 26660048 -176425484 - HSATII Satellite Satellite 0 1096 1 1074 133 5 4 chr5 26660064 26661408 -176424124 - HSATII Satellite Satellite -121 1345 1 871 136 8 15 chr5 26661443 26661928 -176423604 - HSATII Satellite Satellite -50 481 1 830 140 6 11 chr5 26661942 26662281 -176423251 - HSATII Satellite Satellite -98 337 1 870 124 0 0 chr5 26662309 26662462 -176423070 - HSATII Satellite Satellite -2 168 16 1011 125 1 12 chr5 26662477 26663203 -176422329 - HSATII Satellite Satellite -1 717 1 758 126 20 0 chr5 26663229 26663380 -176422152 - HSATII Satellite Satellite 0 170 17 795 151 0 0 chr5 26663396 26663555 -176421977 - HSATII Satellite Satellite -7 163 5 923 105 0 8 chr5 26663589 26663939 -176421593 - HSATII Satellite Satellite -14 347 1 1064 105 4 8 chr5 26663966 26664687 -176420845 - HSATII Satellite Satellite -77 718 1 803 107 21 0 chr5 26664699 26664839 -176420693 - HSATII Satellite Satellite -27 143 1 1122 129 5 4 chr5 26664858 26667085 -176418447 - HSATII Satellite Satellite 0 2228 1 943 115 3 16 chr5 26667111 26667484 -176418048 - HSATII Satellite Satellite -8 368 1 921 117 10 18 chr5 26667526 26668390 -176417142 - HSATII Satellite Satellite -3 857 1 950 102 17 0 chr5 26668436 26668790 -176416742 - HSATII Satellite Satellite 0 360 1 713 123 0 36 chr5 26668806 26669068 -176416464 - HSATII Satellite Satellite -1 252 1 3639 201 11 18 chr5 26769071 26769925 -176315607 - L1 LINE L1 -1978 4168 3321 206 227 0 0 chr5 26769995 26770039 -176315493 + (CATA)n Simple_repeat Simple_repeat 1 44 0 1993 120 39 0 chr5 26770076 26770359 -176315173 - AluSg SINE Alu -11 299 6 32 26 0 0 chr5 26770669 26770708 -176314824 + AT_rich Low_complexity Low_complexity 1 39 0 23 68 0 0 chr5 26770927 26770971 -176314561 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr5 26771806 26771829 -176313703 + AT_rich Low_complexity Low_complexity 1 23 0 512 155 26 22 chr5 26773987 26774121 -176311411 - MSTA LTR MaLR -252 123 8 3745 199 30 56 chr5 26774232 26774333 -176311199 - L1MA10 LINE L1 -127 6207 6105 225 0 0 0 chr5 26774333 26774358 -176311174 + (TG)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr5 26774357 26774378 -176311154 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 3745 199 30 56 chr5 26774358 26774380 -176311152 - L1MA10 LINE L1 -229 6105 6084 2288 98 0 7 chr5 26774380 26774686 -176310846 - AluSx SINE Alu -5 307 4 3745 199 30 56 chr5 26774686 26774775 -176310757 - L1MA10 LINE L1 -250 6084 5994 1261 206 45 75 chr5 26774775 26775004 -176310528 - MLT1A1 LTR MaLR -2 363 147 2066 83 14 0 chr5 26775004 26775180 -176310352 - AluY SINE Alu 0 309 126 195 42 0 0 chr5 26775180 26775204 -176310328 + (TA)n Simple_repeat Simple_repeat 2 25 0 2066 83 14 0 chr5 26775204 26775332 -176310200 - AluY SINE Alu -183 126 1 1261 206 45 75 chr5 26775332 26775475 -176310057 - MLT1A1 LTR MaLR -218 147 1 3745 199 30 56 chr5 26775475 26776038 -176309494 - L1MA10 LINE L1 -340 5994 5417 1893 117 0 0 chr5 26776038 26776302 -176309230 - AluSq SINE Alu -15 298 35 3745 199 30 56 chr5 26776302 26776992 -176308540 - L1MA10 LINE L1 -917 5417 4789 528 147 49 0 chr5 26776992 26777094 -176308438 + L1MA10 LINE L1 6228 6334 0 363 118 40 0 chr5 26777163 26777239 -176308293 + (TA)n Simple_repeat Simple_repeat 1 79 0 231 316 66 7 chr5 26777990 26778142 -176307390 + L1ME3A LINE L1 5999 6159 -11 * 677 308 100 59 chr5 26778141 26779195 -176306337 + L1MC4 LINE L1 6928 8024 -18 21 0 0 0 chr5 26779914 26779935 -176305597 + AT_rich Low_complexity Low_complexity 1 21 0 499 118 0 0 chr5 26780049 26780125 -176305407 + tRNA-Lys-AAG tRNA tRNA 1 76 0 3377 192 29 67 chr5 26780127 26781134 -176304398 - LTR5 LTR ERVK 0 969 1 260 317 59 30 chr5 26781195 26781397 -176304135 + L1ME2 LINE L1 153 360 -6063 440 308 73 57 chr5 26781843 26783036 -176302496 + L1ME2 LINE L1 1140 2542 -4580 1054 262 108 35 chr5 26783160 26783725 -176301807 + L1ME2 LINE L1 6103 6708 -251 260 138 35 35 chr5 26783754 26783812 -176301720 - MLT1F LTR MaLR -7 535 478 1174 123 6 6 chr5 26783812 26783991 -176301541 + AluSx SINE Alu 1 179 -133 2177 81 3 7 chr5 26784016 26784300 -176301232 + AluSp SINE Alu 1 283 -30 228 173 0 19 chr5 26784357 26784409 -176301123 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1075 276 77 85 chr5 26784552 26785127 -176300405 - MLT1G LTR MaLR 0 590 21 216 195 12 61 chr5 26786371 26786453 -176299079 + (CATATA)n Simple_repeat Simple_repeat 4 81 0 462 263 21 27 chr5 26787101 26787287 -176298245 + Zaphod DNA AcHobo 957 1141 -2890 1172 268 100 33 chr5 26787364 26788031 -176297501 + Zaphod DNA AcHobo 1918 2629 -1402 553 147 6 159 chr5 26788065 26788228 -176297304 + MER1B DNA MER1_type 202 339 0 * 1092 247 123 72 chr5 26788228 26789226 -176296306 + Zaphod DNA AcHobo 2633 3681 -350 531 257 0 0 chr5 26789990 26790103 -176295429 - FLAM_A SINE Alu -24 118 6 2228 108 0 0 chr5 26790155 26790452 -176295080 + AluSx SINE Alu 2 298 -14 472 15 31 0 chr5 26790453 26790518 -176295014 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 876 226 136 31 chr5 26790587 26791042 -176294490 - MER114 LTR ERV -60 588 86 23 54 0 0 chr5 26791367 26791404 -176294128 + AT_rich Low_complexity Low_complexity 1 37 0 1071 231 21 87 chr5 26792035 26792567 -176292965 + LTR5 LTR ERVK 473 969 0 245 302 167 29 chr5 26792758 26793033 -176292499 + L2 LINE L2 1837 2149 -1165 5610 70 16 1 chr5 26793033 26793319 -176292213 + L1PA7 LINE L1 5401 5681 -473 303 28 0 0 chr5 26793319 26793355 -176292177 + (TG)n Simple_repeat Simple_repeat 2 37 0 5610 70 16 1 chr5 26793355 26793811 -176291721 + L1PA7 LINE L1 5681 6154 0 186 43 0 0 chr5 26794259 26794282 -176291250 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 1927 97 0 0 chr5 26795241 26795557 -176289975 + L1PA8 LINE L1 5889 6204 0 27 29 0 0 chr5 26795634 26795668 -176289864 + AT_rich Low_complexity Low_complexity 1 34 0 222 343 15 0 chr5 26796259 26796326 -176289206 + MIR SINE MIR 11 78 -184 426 53 0 0 chr5 26796397 26796454 -176289078 + (CA)n Simple_repeat Simple_repeat 2 58 0 21 57 0 0 chr5 26797348 26797383 -176288149 + AT_rich Low_complexity Low_complexity 1 35 0 613 300 46 23 chr5 26797647 26797907 -176287625 - MLT1C LTR MaLR -2 465 200 235 161 0 36 chr5 26797948 26798004 -176287528 - MLT1C LTR MaLR -336 54 1 191 227 23 0 chr5 26798128 26798172 -176287360 + L2 LINE L2 3269 3313 0 249 169 31 0 chr5 26798527 26798592 -176286940 - MER53 DNA DNA -28 161 95 337 263 25 107 chr5 26799432 26799675 -176285857 + L2 LINE L2 3075 3297 -16 27 29 0 0 chr5 26801234 26801268 -176284264 + AT_rich Low_complexity Low_complexity 1 34 0 1139 159 24 19 chr5 26801929 26802137 -176283395 - THE1C LTR MaLR -166 209 1 9973 131 7 28 chr5 26802137 26803751 -176281781 - THE1B-int LTR MaLR 0 1580 1 1663 149 2 140 chr5 26803751 26804173 -176281359 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr5 26804201 26804229 -176281303 + AT_rich Low_complexity Low_complexity 1 28 0 263 289 11 0 chr5 26805172 26805262 -176280270 + LTR67 LTR ERVL 458 548 -9 267 31 0 0 chr5 26805351 26805383 -176280149 + (T)n Simple_repeat Simple_repeat 1 32 0 2025 126 3 7 chr5 26806235 26806545 -176278987 + AluSc SINE Alu 1 309 0 31 26 0 0 chr5 26806646 26806684 -176278848 + AT_rich Low_complexity Low_complexity 1 38 0 2177 120 3 0 chr5 26807326 26807635 -176277897 + AluSx SINE Alu 1 310 -2 1948 207 32 82 chr5 26807982 26808580 -176276952 + MLT2B3 LTR ERVL 1 520 0 236 197 0 30 chr5 26809987 26810053 -176275479 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 31 26 0 0 chr5 26810075 26810113 -176275419 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr5 26810290 26810319 -176275213 + AT_rich Low_complexity Low_complexity 1 29 0 428 327 58 78 chr5 26812695 26813181 -176272351 + L1M4 LINE L1 3677 4152 -1994 2930 246 128 27 chr5 26813527 26814767 -176270765 + L1MC3 LINE L1 467 1580 -4984 2149 128 3 0 chr5 26814767 26815072 -176270460 - AluSx SINE Alu -6 306 1 2930 246 128 27 chr5 26815072 26816894 -176268638 + L1MC3 LINE L1 1580 4079 -2485 1156 211 5 33 chr5 26816894 26817259 -176268273 + LTR2 LTR ERV1 1 449 0 522 261 14 41 chr5 26817259 26817477 -176268055 + L1MC3 LINE L1 4076 4287 -2277 2010 131 6 10 chr5 26817495 26817808 -176267724 - AluSx SINE Alu 0 312 1 6817 220 45 46 chr5 26817864 26819751 -176265781 + L1MC3 LINE L1 4821 6717 -1486 2025 116 0 0 chr5 26819751 26820047 -176265485 - AluSc SINE Alu 0 298 3 6817 220 45 46 chr5 26820047 26821040 -176264492 + L1MC3 LINE L1 6717 7709 -494 1108 193 79 73 chr5 26821099 26821467 -176264065 + L1MC3 LINE L1 7834 8203 0 317 367 58 60 chr5 26821467 26821898 -176263634 + L1ME LINE L1 5294 5723 -447 25 0 0 0 chr5 26822286 26822311 -176263221 + AT_rich Low_complexity Low_complexity 1 25 0 198 222 0 0 chr5 26823102 26823156 -176262376 + (TA)n Simple_repeat Simple_repeat 1 54 0 2114 182 73 6 chr5 26823454 26823920 -176261612 - L1MA9 LINE L1 -2 6310 5814 * 24250 151 28 18 chr5 26823914 26830238 -176255294 - L1PA8A LINE L1 0 6446 1 639 230 27 4 chr5 26830347 26830508 -176255024 - L1M4 LINE L1 -370 5804 5643 899 214 57 12 chr5 26830515 26830757 -176254775 - L1P4 LINE L1 -470 5698 5452 2262 109 3 0 chr5 26831733 26832037 -176253495 + AluSg SINE Alu 1 305 -5 2496 71 0 0 chr5 26832986 26833296 -176252236 - AluY SINE Alu -1 310 1 415 370 80 9 chr5 26833642 26833866 -176251666 + MIR SINE MIR 10 249 -13 21 57 0 0 chr5 26834197 26834232 -176251300 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr5 26834541 26834565 -176250967 + AT_rich Low_complexity Low_complexity 1 24 0 1564 184 13 33 chr5 26836173 26836477 -176249055 - AluJo SINE Alu -14 298 1 381 93 0 0 chr5 26836921 26836975 -176248557 + (CA)n Simple_repeat Simple_repeat 2 55 0 456 237 71 44 chr5 26838649 26838954 -176246578 - MER52A LTR ERV1 -51 743 202 408 331 140 0 chr5 26838945 26839081 -176246451 - MER52A LTR ERV1 -931 824 670 * 24 0 0 0 chr5 26839178 26839202 -176246330 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr5 26841140 26841186 -176244346 + AT_rich Low_complexity Low_complexity 1 46 0 4046 121 20 3 chr5 26841186 26841821 -176243711 - L1PA16 LINE L1 -9 6157 5512 605 236 16 0 chr5 26842670 26842861 -176242671 - L1MD3 LINE L1 -2 7993 7800 1029 242 17 0 chr5 26842977 26843208 -176242324 + MLT1D LTR MaLR 3 237 -268 7659 110 22 3 chr5 26843221 26845165 -176240367 + L1PA8 LINE L1 4207 6172 0 560 250 39 69 chr5 26845175 26845407 -176240125 - L1M4 LINE L1 -1060 5086 4862 727 246 174 0 chr5 26845416 26845623 -176239909 + MLT1D LTR MaLR 263 505 0 246 282 0 42 chr5 26845979 26846050 -176239482 + L2 LINE L2 3204 3271 -1 3058 86 14 0 chr5 26846570 26846998 -176238534 + L1PA7 LINE L1 5713 6146 -8 1967 145 44 20 chr5 26847315 26847722 -176237810 - L1MA4 LINE L1 -9 6291 5875 2563 147 44 6 chr5 26847724 26848201 -176237331 + L1MA4 LINE L1 5408 5902 -398 203 278 14 0 chr5 26848859 26848931 -176236601 + (TA)n Simple_repeat Simple_repeat 1 73 0 2286 276 81 33 chr5 26849411 26850497 -176235035 + L1MC4a LINE L1 6667 7804 -4 21 0 0 0 chr5 26850569 26850590 -176234942 + AT_rich Low_complexity Low_complexity 1 21 0 1441 242 57 22 chr5 26850699 26851204 -176234328 + Charlie1b DNA MER1_type 1 523 0 509 316 23 12 chr5 26851231 26851402 -176234130 - MER5B DNA MER1_type 0 178 6 1680 215 36 29 chr5 26852188 26852579 -176232953 + MSTD LTR MaLR 2 374 0 1762 112 14 25 chr5 26853266 26853544 -176231988 + THE1C LTR MaLR 101 375 0 582 15 0 0 chr5 26853662 26853729 -176231803 - L1PA4 LINE L1 -191 5964 5898 198 0 0 0 chr5 26853751 26853773 -176231759 + (TAA)n Simple_repeat Simple_repeat 3 24 0 198 284 0 40 chr5 26853892 26853966 -176231566 + L2 LINE L2 2475 2545 -769 626 349 79 19 chr5 26854313 26854857 -176230675 + L2 LINE L2 2687 3266 -47 2362 78 3 3 chr5 26855349 26855656 -176229876 + AluSc SINE Alu 1 307 -2 715 246 45 6 chr5 26855775 26855954 -176229578 + MER58A DNA MER1_type 2 187 -37 649 292 182 23 chr5 26856816 26857124 -176228408 - MLT1G1 LTR MaLR -78 517 161 1986 188 3 3 chr5 26857233 26857584 -176227948 - MER47A DNA MER2_type 0 366 16 207 162 0 0 chr5 26860155 26860192 -176225340 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 57 0 0 chr5 26860280 26860315 -176225217 + AT_rich Low_complexity Low_complexity 1 35 0 1903 132 7 0 chr5 26860611 26860883 -176224649 - AluSg SINE Alu -32 278 5 327 343 62 37 chr5 26860957 26861310 -176224222 + L1MD2 LINE L1 4801 5162 -984 233 278 78 37 chr5 26861365 26861556 -176223976 + L1MD2 LINE L1 5260 5458 -2350 2291 279 83 40 chr5 26861878 26863127 -176222405 - L1ME1 LINE L1 -5 6161 4967 1386 187 38 54 chr5 26863127 26863443 -176222089 + AluJb SINE Alu 2 312 0 2291 279 83 40 chr5 26863443 26864342 -176221190 - L1ME1 LINE L1 -1199 4967 3765 2675 265 69 31 chr5 26864345 26864482 -176221050 - MER45B DNA AcHobo -541 1040 910 869 92 39 0 chr5 26864482 26864612 -176220920 - L1PA13 LINE L1 -1 6162 6028 2675 265 69 31 chr5 26864612 26865473 -176220059 - MER45B DNA AcHobo -671 910 4 195 162 0 0 chr5 26865496 26865533 -176219999 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr5 26865608 26865631 -176219901 + AT_rich Low_complexity Low_complexity 1 23 0 214 149 21 21 chr5 26865753 26865800 -176219732 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1151 187 37 8 chr5 26866042 26866288 -176219244 + L1MD2 LINE L1 6087 6339 -20 2834 10 0 0 chr5 26867146 26867457 -176218075 - AluYa5 SINE Alu 0 311 1 695 287 54 16 chr5 26867908 26868226 -176217306 + MLT1G LTR MaLR 4 298 -292 1874 280 72 12 chr5 26868243 26869150 -176216382 - L1MC/D LINE L1 -743 5472 4575 1397 296 91 22 chr5 26869128 26869775 -176215757 - L1MC/D LINE L1 -5595 801 99 * 207 114 0 0 chr5 26869775 26869810 -176215722 + (TG)n Simple_repeat Simple_repeat 2 36 0 1397 296 91 22 chr5 26869810 26869878 -176215654 - L1MC/D LINE L1 -6297 99 37 223 227 30 15 chr5 26870117 26870183 -176215349 + GA-rich Low_complexity Low_complexity 5 71 0 556 188 38 30 chr5 26870669 26870802 -176214730 - L1PA15 LINE L1 0 6165 6032 2470 123 36 5 chr5 26870806 26871196 -176214336 + MLT2A1 LTR ERVL 2 403 -41 261 138 0 35 chr5 26871211 26871269 -176214263 + L1MC4 LINE L1 6648 6703 -1339 301 275 11 11 chr5 26871371 26871462 -176214070 + L1MC4 LINE L1 6613 6703 -1339 5441 88 4 4 chr5 26871494 26872218 -176213314 + HERVL-A1 LTR ERVL 2 725 -4929 * 8366 98 14 0 chr5 26872214 26873341 -176212191 + HERVL-A1 LTR ERVL 2227 3369 -2285 5886 105 21 40 chr5 26873342 26874249 -176211283 + HERVL-A1 LTR ERVL 4765 5654 0 2643 117 23 5 chr5 26874249 26874642 -176210890 + MLT2A1 LTR ERVL 1 400 -44 258 130 0 0 chr5 26874666 26874712 -176210820 - LTR66 LTR ERVL -171 439 394 5676 203 23 3 chr5 26874726 26876681 -176208851 - L1PA15 LINE L1 -212 5953 3958 34 0 0 0 chr5 26877280 26877314 -176208218 + AT_rich Low_complexity Low_complexity 1 34 0 7285 17 0 0 chr5 26877314 26878147 -176207385 - L1PA2 LINE L1 0 6155 5323 3859 34 0 0 chr5 26878146 26878620 -176206912 + L1PA2 LINE L1 4880 5353 -793 * 321 271 110 79 chr5 26878838 26879192 -176206340 - L1ME4a LINE L1 -158 5963 5599 657 282 67 20 chr5 26880439 26880694 -176204838 + LTR16A LTR ERVL 158 424 -26 239 312 72 22 chr5 26881436 26881574 -176203958 - MLT1J1 LTR MaLR -281 165 21 213 281 0 35 chr5 26882475 26882532 -176203000 + L3 LINE CR1 1521 1575 -2 408 141 3 67 chr5 26883829 26884463 -176201069 + (TA)n Simple_repeat Simple_repeat 1 593 0 333 0 0 0 chr5 26884482 26884519 -176201013 + (TG)n Simple_repeat Simple_repeat 2 38 0 225 0 0 0 chr5 26884518 26884543 -176200989 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 50 0 0 0 chr5 26884672 26884722 -176200810 + AT_rich Low_complexity Low_complexity 1 50 0 314 286 11 0 chr5 26884725 26884816 -176200716 + L1MC4 LINE L1 6612 6703 -1339 324 286 0 22 chr5 26884828 26884919 -176200613 + L1MC4 LINE L1 6614 6702 -1340 192 40 0 0 chr5 26884920 26884945 -176200587 + (TA)n Simple_repeat Simple_repeat 1 25 0 2130 116 3 3 chr5 26884950 26885253 -176200279 + AluSx SINE Alu 1 303 -9 228 297 16 0 chr5 26885580 26885644 -176199888 + CT-rich Low_complexity Low_complexity 2 66 0 300 70 0 0 chr5 26885650 26885693 -176199839 + (CA)n Simple_repeat Simple_repeat 2 44 0 371 235 128 28 chr5 26885694 26885873 -176199659 - L1MC4 LINE L1 -147 7895 7699 1335 219 29 4 chr5 26886142 26886436 -176199096 + AluJb SINE Alu 1 301 0 288 330 20 20 chr5 26886573 26886673 -176198859 - L2 LINE L2 0 3313 3214 832 280 48 46 chr5 26887056 26887517 -176198015 + MLT1H LTR MaLR 41 541 -8 274 358 0 59 chr5 26887534 26887721 -176197811 - L2 LINE L2 -660 2654 2479 1213 217 134 93 chr5 26888527 26888970 -176196562 + MLT2B1 LTR ERVL 1 467 -53 192 40 0 0 chr5 26888970 26888995 -176196537 + (TG)n Simple_repeat Simple_repeat 2 26 0 1213 217 134 93 chr5 26888995 26889044 -176196488 + MLT2B1 LTR ERVL 467 513 -7 314 258 150 42 chr5 26889944 26890064 -176195468 - L2 LINE L2 -5 3308 3176 6186 58 47 0 chr5 26890249 26891139 -176194393 - L1PA7 LINE L1 -1 6153 5223 231 114 0 0 chr5 26892099 26892143 -176193389 + (TTAA)n Simple_repeat Simple_repeat 3 46 0 1954 106 4 4 chr5 26892143 26892418 -176193114 - AluSc SINE Alu -32 277 3 933 260 40 173 chr5 26892433 26893079 -176192453 - L2 LINE L2 -275 3038 2527 2657 30 0 0 chr5 26893079 26893383 -176192149 - AluY SINE Alu -7 304 1 933 260 40 173 chr5 26893383 26893849 -176191683 - L2 LINE L2 -786 2527 2001 197 65 32 0 chr5 26894181 26894212 -176191320 + (TCTA)n Simple_repeat Simple_repeat 1 32 0 306 297 134 39 chr5 26894218 26894370 -176191162 - L2 LINE L2 -1358 1956 1820 2234 108 0 3 chr5 26894370 26894675 -176190857 - AluSp SINE Alu -9 304 1 306 297 134 39 chr5 26894675 26894828 -176190704 - L2 LINE L2 -1494 1820 1622 183 339 17 0 chr5 26894926 26894985 -176190547 - L2 LINE L2 -2004 1310 1251 26 50 0 0 chr5 26897015 26897055 -176188477 + AT_rich Low_complexity Low_complexity 1 40 0 1499 168 84 19 chr5 26897601 26897923 -176187609 + MER61A LTR ERV1 1 343 0 541 345 103 11 chr5 26898463 26898814 -176186718 - L2 LINE L2 -1001 2313 1931 21 0 0 0 chr5 26898959 26898980 -176186552 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr5 26899166 26899188 -176186344 + AT_rich Low_complexity Low_complexity 1 22 0 32 26 0 0 chr5 26899920 26899959 -176185573 + AT_rich Low_complexity Low_complexity 1 39 0 1554 211 140 24 chr5 26900401 26900852 -176184680 - MLT1D LTR MaLR -2 503 1 1252 199 36 20 chr5 26901483 26901789 -176183743 + LTR65 LTR ERV1 83 393 -276 339 283 7 76 chr5 26902003 26902095 -176183437 + LTR65 LTR ERV1 535 615 -54 2384 270 28 15 chr5 26902095 26902770 -176182762 - MER76 LTR ERV 0 688 5 339 283 7 76 chr5 26902770 26902822 -176182710 + LTR65 LTR ERV1 615 669 0 28 0 0 0 chr5 26903959 26903987 -176181545 + AT_rich Low_complexity Low_complexity 1 28 0 504 286 97 31 chr5 26905788 26906047 -176179485 + MLT1I LTR MaLR 116 391 -18 345 355 74 0 chr5 26906129 26906318 -176179214 + HERVL LTR ERVL 1852 2054 -3600 22 0 0 0 chr5 26906358 26906380 -176179152 + AT_rich Low_complexity Low_complexity 1 22 0 231 125 0 0 chr5 26907097 26907137 -176178395 + (CA)n Simple_repeat Simple_repeat 1 40 0 630 271 30 15 chr5 26907331 26907534 -176177998 - L1ME3A LINE L1 -43 6127 5922 22 70 0 0 chr5 26907894 26907937 -176177595 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr5 26908612 26908634 -176176898 + AT_rich Low_complexity Low_complexity 1 22 0 358 337 17 23 chr5 26909497 26909669 -176175863 + L2 LINE L2 2869 3039 -233 24 0 0 0 chr5 26909853 26909877 -176175655 + AT_rich Low_complexity Low_complexity 1 24 0 305 319 88 0 chr5 26911055 26911168 -176174364 + MIR SINE MIR 66 188 -74 372 43 0 0 chr5 26911253 26911299 -176174233 + (TC)n Simple_repeat Simple_repeat 2 47 0 287 337 6 91 chr5 26913074 26913249 -176172283 - L2 LINE L2 -2802 512 353 1959 120 0 4 chr5 26915631 26915905 -176169627 + AluSx SINE Alu 5 277 -35 21 57 0 0 chr5 26916536 26916571 -176168961 + AT_rich Low_complexity Low_complexity 1 35 0 21 100 0 0 chr5 26917600 26917670 -176167862 + AT_rich Low_complexity Low_complexity 1 70 0 595 328 44 22 chr5 26917815 26918135 -176167397 + L2 LINE L2 2595 2921 -393 296 286 0 22 chr5 26918301 26918392 -176167140 + L2 LINE L2 3225 3313 0 22 0 0 0 chr5 26918562 26918584 -176166948 + AT_rich Low_complexity Low_complexity 1 22 0 765 110 0 0 chr5 26918693 26918811 -176166721 + (TGGA)n Simple_repeat Simple_repeat 1 118 0 1446 211 84 96 chr5 26918865 26919377 -176166155 - LTR53 LTR ERVL 0 519 14 2393 69 0 7 chr5 26919853 26920159 -176165373 + AluY SINE Alu 1 304 -7 26 0 0 0 chr5 26920347 26920373 -176165159 + AT_rich Low_complexity Low_complexity 1 26 0 573 207 69 25 chr5 26920471 26920674 -176164858 - LTR37B LTR ERV1 0 468 257 289 233 19 58 chr5 26920664 26920767 -176164765 - LTR37B LTR ERV1 -167 301 203 * 191 301 27 14 chr5 26920930 26921003 -176164529 - MIR SINE MIR -116 146 73 1711 332 163 24 chr5 26921236 26922934 -176162598 + L2 LINE L2 1367 3301 -12 1980 148 32 37 chr5 26922946 26923323 -176162209 + THE1C LTR MaLR 1 375 0 9932 127 16 30 chr5 26923327 26924926 -176160606 + THE1C-int LTR MaLR 5 1580 0 1560 187 49 38 chr5 26924928 26925297 -176160235 + THE1C LTR MaLR 3 375 0 43 20 0 0 chr5 26926636 26926686 -176158846 + AT_rich Low_complexity Low_complexity 1 50 0 2139 118 0 0 chr5 26927163 26927460 -176158072 - AluSg SINE Alu -13 297 1 1357 259 41 47 chr5 26927546 26928033 -176157499 - MLT1D LTR MaLR -9 496 13 439 235 52 46 chr5 26928053 26928206 -176157326 + MER5A DNA MER1_type 30 183 -6 25 0 0 0 chr5 26928266 26928291 -176157241 + AT_rich Low_complexity Low_complexity 1 25 0 938 241 89 40 chr5 26929427 26929775 -176155757 + MLT1A1 LTR MaLR 1 365 0 230 333 0 34 chr5 26929975 26930092 -176155440 + MIR SINE MIR 137 249 -13 5156 146 7 9 chr5 26930341 26931549 -176153983 - L1PA16 LINE L1 -3 6866 5678 420 133 57 203 chr5 26931551 26931709 -176153823 - L1 LINE L1 -2423 3723 3589 * 6622 251 101 32 chr5 26931707 26934435 -176151097 - L1PA16 LINE L1 -1158 5691 3151 1632 210 7 3 chr5 26934435 26934744 -176150788 - AluJb SINE Alu -2 310 1 6622 251 101 32 chr5 26934744 26934955 -176150577 - L1PA16 LINE L1 -3698 3151 2956 2220 164 76 0 chr5 26934955 26935351 -176150181 + MSTB LTR MaLR 1 426 0 6622 251 101 32 chr5 26935351 26936224 -176149308 - L1PA16 LINE L1 -3893 2956 1415 1224 254 0 43 chr5 26936652 26936955 -176148577 - L1PA16 LINE L1 -6116 733 444 961 307 97 17 chr5 26937691 26938105 -176147427 - L1M2 LINE L1 -6399 450 4 23 33 0 0 chr5 26938647 26938677 -176146855 + AT_rich Low_complexity Low_complexity 1 30 0 216 319 49 49 chr5 26938900 26939063 -176146469 + L2 LINE L2 3151 3313 0 304 216 32 24 chr5 26939145 26939270 -176146262 + (TA)n Simple_repeat Simple_repeat 2 127 0 22 56 0 0 chr5 26939429 26939465 -176146067 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr5 26939871 26939907 -176145625 + AT_rich Low_complexity Low_complexity 1 36 0 354 282 19 19 chr5 26940086 26940189 -176145343 + L2 LINE L2 3209 3311 -2 21 0 0 0 chr5 26940917 26940938 -176144594 + AT_rich Low_complexity Low_complexity 1 21 0 435 296 9 0 chr5 26940963 26941078 -176144454 + L1MEc LINE L1 131 246 -6150 1223 242 54 84 chr5 27041091 27041184 -176044348 + MLT2B3 LTR ERVL 126 220 -334 5017 114 5 52 chr5 27041184 27042003 -176043529 - LTR17 LTR ERV1 0 780 1 1223 242 54 84 chr5 27042003 27042351 -176043181 + MLT2B3 LTR ERVL 220 554 0 189 298 202 29 chr5 27042488 27042592 -176042940 + MIR SINE MIR 48 169 -93 1708 272 37 54 chr5 27043076 27043672 -176041860 + MLT1E LTR MaLR 1 586 -7 206 0 0 65 chr5 27043739 27043770 -176041762 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 339 307 79 42 chr5 27044088 27044277 -176041255 + MIR SINE MIR 10 205 -57 3182 110 2 40 chr5 27044277 27044804 -176040728 + L1PA13 LINE L1 5657 6163 0 333 279 36 9 chr5 27044869 27044980 -176040552 + MER94 DNA DNA 19 132 -2 22 0 0 0 chr5 27045223 27045245 -176040287 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr5 27045761 27045792 -176039740 + AT_rich Low_complexity Low_complexity 1 31 0 1653 87 0 0 chr5 27045809 27046027 -176039505 + AluY SINE Alu 92 309 -2 877 168 5 92 chr5 27046382 27046578 -176038954 + AluJb SINE Alu 1 179 -133 387 0 0 0 chr5 27046586 27046629 -176038903 + (TG)n Simple_repeat Simple_repeat 2 44 0 367 304 20 17 chr5 27046714 27046964 -176038568 + GA-rich Low_complexity Low_complexity 1 250 0 222 230 0 44 chr5 27046987 27047122 -176038410 + GA-rich Low_complexity Low_complexity 1 129 0 941 242 4 37 chr5 27047274 27047518 -176038014 + MLT1D LTR MaLR 3 238 -388 189 0 0 0 chr5 27047518 27047539 -176037993 + (TTA)n Simple_repeat Simple_repeat 1 21 0 1411 165 55 4 chr5 27047590 27047845 -176037687 - AluJb SINE Alu -44 268 1 1130 211 0 38 chr5 27047868 27048129 -176037403 + MLT1D LTR MaLR 254 504 -1 3431 34 0 0 chr5 27049096 27049509 -176036023 - L1PA4 LINE L1 -5 6150 5738 24 0 0 0 chr5 27049555 27049579 -176035953 + AT_rich Low_complexity Low_complexity 1 24 0 8582 22 1 0 chr5 27049939 27050948 -176034584 - L1PA4 LINE L1 -1439 4707 3698 7507 33 0 0 chr5 27050948 27052415 -176033117 + L1PA4 LINE L1 4686 6152 -3 295 275 78 115 chr5 27052735 27053030 -176032502 - MLT1H LTR MaLR -156 393 110 963 235 98 15 chr5 27054169 27054487 -176031045 - L1MB7 LINE L1 -10 6174 5831 267 133 0 0 chr5 27054506 27054551 -176030981 + (CA)n Simple_repeat Simple_repeat 1 45 0 180 0 0 0 chr5 27055613 27055633 -176029899 + (A)n Simple_repeat Simple_repeat 1 20 0 1340 219 21 53 chr5 27056910 27056990 -176028542 - MER74C LTR ERVL -3 457 376 1904 129 28 0 chr5 27056990 27057276 -176028256 + AluSx SINE Alu 4 297 -15 1340 219 21 53 chr5 27057276 27057533 -176027999 - MER74C LTR ERVL -84 376 131 1293 221 5 63 chr5 27057541 27057921 -176027611 - L1 LINE L1 -1379 4767 4410 * 4373 177 18 55 chr5 27057917 27059009 -176026523 + L1MB1 LINE L1 5096 6167 -1 2068 135 3 3 chr5 27061333 27061629 -176023903 - AluSx SINE Alu -16 296 1 275 95 0 32 chr5 27062163 27062226 -176023306 + LTR66 LTR ERVL 379 439 -171 273 57 0 0 chr5 27062272 27062307 -176023225 + (GA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr5 27062317 27062338 -176023194 + AT_rich Low_complexity Low_complexity 1 21 0 1554 171 3 52 chr5 27062792 27063101 -176022431 + AluJo SINE Alu 1 294 -18 28 48 0 0 chr5 27064131 27064173 -176021359 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr5 27064209 27064245 -176021287 + AT_rich Low_complexity Low_complexity 1 36 0 332 377 49 12 chr5 27064660 27064904 -176020628 - L2 LINE L2 -935 2379 2127 189 107 0 0 chr5 27067143 27067171 -176018361 + (CCCCG)n Simple_repeat Simple_repeat 1 28 0 2215 138 69 12 chr5 27067360 27067765 -176017767 - MSTA LTR MaLR 0 428 1 2321 73 0 0 chr5 27068002 27068333 -176017199 + AluY SINE Alu 1 331 0 218 353 168 0 chr5 27070318 27070437 -176015095 - L2 LINE L2 -9 3263 3125 797 272 31 9 chr5 27070586 27070810 -176014722 - MIR SINE MIR -3 259 31 278 0 54 0 chr5 27072569 27072606 -176012926 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1872 169 29 8 chr5 27072612 27072996 -176012536 + L1MA8 LINE L1 5893 6284 -7 2005 137 0 0 chr5 27073072 27073356 -176012176 + AluSg SINE Alu 3 286 -24 30 27 0 0 chr5 27073391 27073428 -176012104 + AT_rich Low_complexity Low_complexity 1 37 0 345 308 103 0 chr5 27074449 27074566 -176010966 + L2 LINE L2 3184 3312 -1 189 0 0 0 chr5 27075382 27075403 -176010129 + (T)n Simple_repeat Simple_repeat 1 21 0 15862 183 51 14 chr5 27075774 27083200 -176002332 - L1MA2 LINE L1 0 7723 15 25 31 0 0 chr5 27083275 27083307 -176002225 + AT_rich Low_complexity Low_complexity 1 32 0 1986 116 10 23 chr5 27083315 27083617 -176001915 - AluSp SINE Alu -15 298 1 24 85 0 0 chr5 27085035 27085094 -176000438 + AT_rich Low_complexity Low_complexity 1 59 0 294 76 114 0 chr5 27085723 27085855 -175999677 + (TA)n Simple_repeat Simple_repeat 1 147 0 360 0 0 0 chr5 27085861 27085901 -175999631 + (CA)n Simple_repeat Simple_repeat 2 41 0 613 168 87 40 chr5 27085902 27086051 -175999481 + AluJb SINE Alu 130 285 -27 252 289 134 35 chr5 27086333 27086475 -175999057 + L2 LINE L2 3158 3313 0 857 269 20 5 chr5 27087045 27087246 -175998286 - MER58A DNA MER1_type 0 224 21 709 185 81 0 chr5 27087250 27087423 -175998109 + MER53 DNA DNA 3 189 0 375 105 0 0 chr5 27087560 27087617 -175997915 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 676 173 0 0 chr5 27087644 27087754 -175997778 - FRAM SINE Alu -71 105 1 3289 101 8 12 chr5 27087754 27088251 -175997281 + L1PB1 LINE L1 5295 5789 -362 290 45 36 80 chr5 27088251 27088363 -175997169 + (TA)n Simple_repeat Simple_repeat 1 107 0 2566 101 3 0 chr5 27088367 27088733 -175996799 + L1PB1 LINE L1 5785 6151 0 30 27 0 0 chr5 27089024 27089061 -175996471 + AT_rich Low_complexity Low_complexity 1 37 0 235 224 86 35 chr5 27089134 27089250 -175996282 - L1M4 LINE L1 -2515 3631 3510 1275 225 10 24 chr5 27089267 27089435 -175996097 - AluJo SINE Alu -23 289 125 252 0 0 0 chr5 27089435 27089463 -175996069 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1275 225 10 24 chr5 27089463 27089587 -175995945 - AluJo SINE Alu -187 125 1 316 261 103 18 chr5 27089592 27089757 -175995775 - L1M4 LINE L1 -2630 3516 3338 718 223 76 65 chr5 27089848 27089934 -175995598 - L1M4 LINE L1 -2921 3225 3141 3057 130 6 6 chr5 27089934 27090419 -175995113 + L1PB2 LINE L1 5663 6147 -4 718 223 76 65 chr5 27090419 27090793 -175994739 - L1M4 LINE L1 -3005 3141 2760 725 61 10 0 chr5 27091508 27091607 -175993925 + (TTCC)n Simple_repeat Simple_repeat 3 102 0 550 143 0 27 chr5 27091712 27091824 -175993708 + (TTTC)n Simple_repeat Simple_repeat 3 111 0 1657 121 23 23 chr5 27091846 27092110 -175993422 - AluSp SINE Alu -47 266 3 21 36 0 0 chr5 27092159 27092187 -175993345 + AT_rich Low_complexity Low_complexity 1 28 0 237 173 0 39 chr5 27092195 27092247 -175993285 + MER76 LTR ERV 8 57 -631 200 313 42 0 chr5 27092370 27092466 -175993066 - MIR SINE MIR -36 226 127 27 81 0 0 chr5 27092537 27092599 -175992933 + AT_rich Low_complexity Low_complexity 1 62 0 380 350 172 13 chr5 27093508 27093968 -175991564 + L3 LINE CR1 968 1500 -77 314 359 59 48 chr5 27094505 27094859 -175990673 + L1MEd LINE L1 270 627 -5492 222 105 0 0 chr5 27094978 27095016 -175990516 + (CAAAA)n Simple_repeat Simple_repeat 4 41 0 1782 153 58 9 chr5 27095935 27096262 -175989270 - MER61A LTR ERV1 0 343 1 30 45 0 0 chr5 27097071 27097115 -175988417 + AT_rich Low_complexity Low_complexity 1 44 0 198 398 91 8 chr5 27097367 27097608 -175987924 + L2 LINE L2 2146 2406 -908 1813 158 57 3 chr5 27097857 27098173 -175987359 + MER1B DNA MER1_type 4 336 -1 413 221 16 49 chr5 27098173 27098232 -175987300 + MER20 DNA MER1_type 102 156 -63 1963 186 53 17 chr5 27098232 27098645 -175986887 - MSTA LTR MaLR 0 428 1 413 221 16 49 chr5 27098645 27098707 -175986825 + MER20 DNA MER1_type 156 219 0 225 51 102 85 chr5 27098751 27098810 -175986722 + L1PA10 LINE L1 6107 6166 -2 205 222 42 42 chr5 27099666 27099738 -175985794 - L2 LINE L2 -8 3305 3234 576 261 121 104 chr5 27099887 27100308 -175985224 - MLT1A2 LTR MaLR 0 374 17 24 32 0 0 chr5 27100684 27100715 -175984817 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr5 27101300 27101335 -175984197 + AT_rich Low_complexity Low_complexity 1 35 0 1063 233 110 36 chr5 27101493 27101802 -175983730 - L1M4b LINE L1 -6515 344 13 194 62 31 0 chr5 27101876 27101908 -175983624 + (TC)n Simple_repeat Simple_repeat 2 34 0 1332 250 80 28 chr5 27101983 27102118 -175983414 + L1M4 LINE L1 560 687 -6172 294 29 0 0 chr5 27102118 27102153 -175983379 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1332 250 80 28 chr5 27102153 27102441 -175983091 + L1M4 LINE L1 687 1005 -5854 1754 236 50 28 chr5 27102449 27103012 -175982520 + L1M4 LINE L1 4303 4877 -2080 324 314 84 42 chr5 27103489 27103893 -175981639 - L1M4 LINE L1 -3168 2978 2558 356 191 16 24 chr5 27104785 27104911 -175980621 + C-rich Low_complexity Low_complexity 5 129 0 184 77 96 0 chr5 27104914 27104966 -175980566 + CT-rich Low_complexity Low_complexity 3 59 0 31 0 0 0 chr5 27105674 27105705 -175979827 + AT_rich Low_complexity Low_complexity 1 31 0 933 236 148 116 chr5 27107477 27108199 -175977333 - L1ME1 LINE L1 -18 6148 5404 241 215 15 15 chr5 27108340 27108405 -175977127 + L1M4 LINE L1 6020 6084 -873 24 32 0 0 chr5 27108408 27108439 -175977093 + AT_rich Low_complexity Low_complexity 1 31 0 493 241 71 61 chr5 27108468 27108671 -175976861 - L1ME1 LINE L1 -3068 3078 2870 668 160 8 8 chr5 27108671 27108802 -175976730 - L1MA6 LINE L1 -7 6293 6163 493 241 71 61 chr5 27108802 27108893 -175976639 - L1ME1 LINE L1 -3276 2870 2781 1056 198 33 5 chr5 27109166 27109378 -175976154 - MER20 DNA MER1_type 0 219 2 16940 126 5 8 chr5 27109414 27112957 -175972575 + L1PA8A LINE L1 2570 6102 -29 2286 98 3 0 chr5 27112994 27113291 -175972241 - AluSp SINE Alu -15 298 1 1450 177 75 39 chr5 27113672 27114034 -175971498 + THE1C LTR MaLR 1 375 0 8484 162 21 40 chr5 27114036 27115644 -175969888 + THE1B-int LTR MaLR 3 1579 -1 1582 171 59 39 chr5 27115644 27116001 -175969531 + THE1B LTR MaLR 1 364 0 2474 245 75 3 chr5 27116576 27117283 -175968249 - L1ME1 LINE L1 -79 6087 5330 47 0 0 0 chr5 27117299 27117346 -175968186 + AT_rich Low_complexity Low_complexity 1 47 0 1613 236 54 58 chr5 27117346 27117848 -175967684 - L1ME1 LINE L1 -826 5320 4820 1977 168 31 11 chr5 27117848 27118205 -175967327 + THE1B LTR MaLR 1 364 0 1613 236 54 58 chr5 27118205 27118354 -175967178 - L1ME1 LINE L1 -1326 4820 4672 3791 219 52 9 chr5 27118522 27119419 -175966113 + L1MD2 LINE L1 5396 6331 -28 7496 199 43 17 chr5 27119505 27120307 -175965225 + L1PA15 LINE L1 3529 4308 -1857 2328 64 3 49 chr5 27120307 27120633 -175964899 - AluY SINE Alu 0 311 1 7496 199 43 17 chr5 27120633 27122052 -175963480 + L1PA15 LINE L1 4308 5802 -363 1332 49 0 12 chr5 27122053 27122215 -175963317 - AluY SINE Alu -151 160 1 1902 171 9 6 chr5 27122247 27122591 -175962941 + L1PA15 LINE L1 5815 6159 -6 3859 41 0 0 chr5 27122629 27123091 -175962441 + L1PA4 LINE L1 5679 6140 -15 351 0 0 0 chr5 27123091 27123130 -175962402 + (TA)n Simple_repeat Simple_repeat 1 39 0 344 341 51 46 chr5 27123326 27123543 -175961989 - MIR SINE MIR 0 262 45 462 368 66 22 chr5 27124116 27124526 -175961006 + LTR16A LTR ERVL 23 450 0 274 296 0 34 chr5 27125064 27125152 -175960380 - MIR SINE MIR -4 258 174 187 345 106 18 chr5 27125635 27125748 -175959784 + MIR SINE MIR 16 138 -124 230 316 88 18 chr5 27128043 27128157 -175957375 - MIR3 SINE MIR -51 157 36 1356 238 23 26 chr5 27128195 27128586 -175956946 + MLT1B LTR MaLR 1 390 0 925 146 20 7 chr5 27128766 27128917 -175956615 - MER4E LTR ERV1 -292 487 335 1314 264 124 60 chr5 27129185 27129984 -175955548 - L1ME1 LINE L1 -5 6161 5312 4576 169 71 5 chr5 27130110 27130941 -175954591 - MER4D LTR ERV1 -17 886 1 782 268 93 12 chr5 27130943 27131372 -175954160 - L1ME1 LINE L1 -912 5234 4771 5313 204 8 20 chr5 27131383 27132451 -175953081 + MSTA-int LTR MaLR 526 1580 0 1668 187 167 8 chr5 27132452 27132811 -175952721 + MSTA LTR MaLR 2 417 -11 258 260 0 49 chr5 27133104 27133227 -175952305 + L1MC4 LINE L1 7926 8042 0 188 289 133 12 chr5 27135303 27135386 -175950146 + MIR SINE MIR 48 140 -122 2225 119 0 0 chr5 27135703 27136013 -175949519 - AluSx SINE Alu 0 312 3 182 321 47 19 chr5 27136729 27136835 -175948697 - L2 LINE L2 -276 3037 2929 26 30 0 0 chr5 27137327 27137360 -175948172 + AT_rich Low_complexity Low_complexity 1 33 0 701 190 22 49 chr5 27137674 27137858 -175947674 + MER53 DNA DNA 11 189 0 941 149 0 0 chr5 27138733 27138881 -175946651 - MER6 DNA MER2_type -1 864 717 876 209 30 25 chr5 27138881 27139082 -175946450 - MER6 DNA MER2_type -663 202 1 1023 253 55 62 chr5 27139441 27140377 -175945155 + L1ME LINE L1 839 3698 -2517 512 297 46 10 chr5 27140369 27140587 -175944945 + L1ME LINE L1 5415 5639 -620 * 426 251 31 9 chr5 27140590 27140735 -175944797 + L1ME LINE L1 5705 5853 -394 1943 145 62 28 chr5 27141347 27141699 -175943833 + THE1B LTR MaLR 1 364 0 2393 80 3 3 chr5 27141900 27142212 -175943320 + AluSp SINE Alu 1 312 -1 2097 167 60 19 chr5 27142665 27143170 -175942362 + MLT2A2 LTR ERVL 1 554 0 29 28 0 0 chr5 27143367 27143403 -175942129 + AT_rich Low_complexity Low_complexity 1 36 0 1649 204 76 20 chr5 27143767 27144173 -175941359 - MSTB1 LTR MaLR -3 429 1 286 326 37 59 chr5 27144185 27144372 -175941160 + MER91B DNA MER1_type 3 185 -5 21 57 0 0 chr5 27145275 27145310 -175940222 + AT_rich Low_complexity Low_complexity 1 35 0 561 170 6 132 chr5 27145380 27145478 -175940054 + MIR SINE MIR 32 104 -158 2828 6 0 0 chr5 27145478 27145789 -175939743 - AluYa5 SINE Alu 0 311 1 561 170 6 132 chr5 27145789 27145849 -175939683 + MIR SINE MIR 104 170 -92 1164 153 0 5 chr5 27145857 27146046 -175939486 + L1PA11 LINE L1 5950 6137 -37 4511 104 23 0 chr5 27146102 27146763 -175938769 - L1PA12 LINE L1 -233 5935 5260 2417 208 10 4 chr5 27146766 27147281 -175938251 - L1PA12 LINE L1 -3734 3850 3333 1704 167 58 25 chr5 27147281 27147640 -175937892 + THE1C LTR MaLR 1 371 -4 1328 175 12 4 chr5 27147644 27147890 -175937642 + THE1C-int LTR MaLR 3 250 -1330 * 1829 213 22 25 chr5 27147887 27148334 -175937198 - L1PA12 LINE L1 -4727 2847 2402 315 0 0 0 chr5 27148358 27148393 -175937139 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3681 246 82 18 chr5 27148394 27149461 -175936071 - L1PA12 LINE L1 -5868 1713 610 356 217 26 72 chr5 27149492 27149644 -175935888 + MIR SINE MIR 87 231 -31 330 328 16 0 chr5 27150853 27150978 -175934554 + MIR SINE MIR 124 250 -12 434 316 88 50 chr5 27151112 27151508 -175934024 + MLT1J2 LTR MaLR 16 426 -24 194 314 144 17 chr5 27152082 27152200 -175933332 + L3b LINE CR1 1273 1405 -178 3593 259 28 26 chr5 27153225 27153701 -175931831 - ERVL LTR ERVL -2355 3409 2935 3003 80 30 18 chr5 27153701 27153745 -175931787 - MLT2A1 LTR ERVL 0 444 402 312 70 0 0 chr5 27153745 27153788 -175931744 + (CA)n Simple_repeat Simple_repeat 2 44 0 3003 80 30 18 chr5 27153788 27154182 -175931350 - MLT2A1 LTR ERVL -42 402 1 3593 259 28 26 chr5 27154182 27154694 -175930838 - ERVL LTR ERVL -2829 2935 2419 3454 234 22 0 chr5 27154924 27155683 -175929849 + ERVL LTR ERVL 1667 2442 -3322 293 212 30 0 chr5 27155684 27155750 -175929782 + MLT2F LTR ERVL 595 662 -1 600 286 5 25 chr5 27155753 27155952 -175929580 + MLT1J2-int LTR MaLR 3 197 -1174 1881 186 30 20 chr5 27156036 27156575 -175928957 - L1MA9 LINE L1 0 6312 5590 1112 257 13 10 chr5 27156605 27156905 -175928627 + MLT1J2-int LTR MaLR 303 603 -768 888 275 27 27 chr5 27157025 27157323 -175928209 + MLT1D LTR MaLR 206 503 -2 465 19 0 0 chr5 27157596 27157650 -175927882 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 2096 115 0 7 chr5 27157650 27157946 -175927586 - AluSx SINE Alu -18 294 1 360 64 0 0 chr5 27157983 27158030 -175927502 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 1951 123 0 4 chr5 27158030 27158306 -175927226 - AluSc SINE Alu -32 277 3 1355 193 55 80 chr5 27158535 27158872 -175926660 - MLT1B LTR MaLR 0 390 63 2057 189 30 32 chr5 27158872 27159306 -175926226 + Tigger2a DNA MER2_type 1 433 -1 1355 193 55 80 chr5 27159306 27159368 -175926164 - MLT1B LTR MaLR -327 63 1 2103 112 0 0 chr5 27159584 27159908 -175925624 + AluSq SINE Alu 1 324 0 22 35 0 0 chr5 27159955 27159984 -175925548 + AT_rich Low_complexity Low_complexity 1 29 0 328 162 176 0 chr5 27159990 27160058 -175925474 + MADE1 DNA Mariner 1 80 0 423 338 83 26 chr5 27160671 27160973 -175924559 + L2 LINE L2 1390 1708 -1606 805 85 31 0 chr5 27161015 27161145 -175924387 + (TTTC)n Simple_repeat Simple_repeat 2 135 0 1402 233 3 18 chr5 27161163 27161494 -175924038 - MLT1A1 LTR MaLR -11 354 29 243 0 0 0 chr5 27161621 27161648 -175923884 + (CA)n Simple_repeat Simple_repeat 2 28 0 183 205 0 0 chr5 27162413 27162452 -175923080 + (TG)n Simple_repeat Simple_repeat 2 40 0 578 177 29 17 chr5 27162455 27162630 -175922902 + (TATG)n Simple_repeat Simple_repeat 4 180 0 391 165 24 0 chr5 27162666 27162751 -175922781 + (TA)n Simple_repeat Simple_repeat 2 88 0 230 152 0 0 chr5 27162751 27162797 -175922735 - LTR66 LTR ERVL -171 439 394 230 203 76 0 chr5 27162797 27162876 -175922656 - L1MC4 LINE L1 -1343 6699 6615 342 311 0 0 chr5 27162887 27162977 -175922555 + L1MC4 LINE L1 6614 6703 -1339 * 352 281 0 0 chr5 27162897 27162986 -175922546 - L1MC4 LINE L1 -1339 6703 6615 254 104 0 42 chr5 27162989 27163037 -175922495 + (CATATA)n Simple_repeat Simple_repeat 6 51 0 238 179 0 0 chr5 27163037 27163093 -175922439 - L1MC4 LINE L1 -1339 6703 6648 2047 247 17 17 chr5 27163770 27164236 -175921296 - MER70A LTR ERVL 0 472 7 221 269 162 75 chr5 27164776 27164827 -175920705 + L2 LINE L2 2714 2759 -513 4639 27 7 0 chr5 27164827 27165381 -175920151 + L1PA4 LINE L1 5598 6155 0 221 269 162 75 chr5 27165381 27165553 -175919979 + L2 LINE L2 2759 2956 -316 2030 132 10 0 chr5 27166613 27166916 -175918616 - AluSq SINE Alu -7 306 1 180 224 0 86 chr5 27167477 27167535 -175917997 - MIR3 SINE MIR -44 164 112 325 317 107 4 chr5 27168370 27168651 -175916881 + L1M4 LINE L1 2662 2971 -3175 264 160 0 0 chr5 27168745 27168795 -175916737 + L1ME3A LINE L1 1339 1388 -4996 * 3256 214 36 37 chr5 27168790 27169682 -175915850 + L1MB5 LINE L1 5276 6166 -8 598 284 124 42 chr5 27169784 27170116 -175915416 + L1ME3A LINE L1 3830 4133 -2249 2060 91 14 0 chr5 27170116 27170412 -175915120 + L1PA13 LINE L1 5845 6144 -19 598 284 124 42 chr5 27170412 27170839 -175914693 + L1ME3A LINE L1 4133 4651 -1731 330 26 0 0 chr5 27171018 27171057 -175914475 + (TG)n Simple_repeat Simple_repeat 1 39 0 209 119 24 0 chr5 27171057 27171099 -175914433 + GA-rich Low_complexity Low_complexity 2 44 0 291 300 84 43 chr5 27171108 27171291 -175914241 + L1ME3A LINE L1 4872 5075 -1307 2261 83 0 13 chr5 27171291 27171591 -175913941 + AluY SINE Alu 1 296 -15 291 300 84 43 chr5 27171591 27171730 -175913802 + L1ME3A LINE L1 5075 5207 -1175 2428 216 31 12 chr5 27171730 27172243 -175913289 + Tigger7 DNA MER2_type 1 523 -1964 450 250 0 0 chr5 27172245 27172333 -175913199 + Tigger7 DNA MER2_type 2400 2487 0 2252 90 0 7 chr5 27172352 27172653 -175912879 + AluY SINE Alu 13 311 0 472 333 41 35 chr5 27172653 27173022 -175912510 + L1ME3A LINE L1 5217 5587 -795 1641 176 46 30 chr5 27173072 27173441 -175912091 + THE1C LTR MaLR 1 375 0 8855 151 30 36 chr5 27173443 27175030 -175910502 + THE1C-int LTR MaLR 3 1579 -1 1258 200 67 41 chr5 27175030 27175368 -175910164 + THE1C LTR MaLR 1 402 -24 263 264 50 8 chr5 27175436 27175557 -175909975 + L1ME3A LINE L1 5691 5816 -590 607 299 36 25 chr5 27175594 27175872 -175909660 + L1ME3A LINE L1 6121 6401 -5 24 53 0 0 chr5 27176001 27176039 -175909493 + AT_rich Low_complexity Low_complexity 1 38 0 762 249 30 6 chr5 27176890 27177128 -175908404 - L1ME2 LINE L1 -259 5905 5712 27 39 0 19 chr5 27177366 27177392 -175908140 + AT_rich Low_complexity Low_complexity 1 26 -25 1854 141 7 7 chr5 27177392 27177683 -175907849 + AluSp SINE Alu 1 291 -22 27 39 0 19 chr5 27177683 27177708 -175907824 + AT_rich Low_complexity Low_complexity 26 51 0 26 0 0 0 chr5 27177822 27177848 -175907684 + AT_rich Low_complexity Low_complexity 1 26 0 333 0 0 0 chr5 27177932 27177969 -175907563 + (CA)n Simple_repeat Simple_repeat 1 37 0 198 277 50 50 chr5 27178111 27178212 -175907320 + MIR SINE MIR 52 152 -110 376 203 0 0 chr5 27178418 27178497 -175907035 - L1 LINE L1 -1729 4417 4339 4760 172 6 42 chr5 27178522 27180328 -175905204 + L1PA6 LINE L1 4409 6154 0 190 373 49 20 chr5 27180652 27180754 -175904778 - L2 LINE L2 -4 3268 3164 22 35 0 0 chr5 27180779 27180808 -175904724 + AT_rich Low_complexity Low_complexity 1 29 0 1649 225 11 3 chr5 27181751 27182111 -175903421 - MLT1A1 LTR MaLR -2 363 1 318 304 87 72 chr5 27183323 27183489 -175902043 + L2 LINE L2 2538 2711 -603 180 0 0 0 chr5 27183489 27183509 -175902023 + (CA)n Simple_repeat Simple_repeat 1 20 0 318 304 87 72 chr5 27183509 27183618 -175901914 + L2 LINE L2 2711 2817 -497 34 24 0 0 chr5 27184844 27184885 -175900647 + AT_rich Low_complexity Low_complexity 1 41 0 7706 218 20 33 chr5 27184981 27187622 -175897910 - L1P5 LINE L1 -660 5491 2966 292 288 36 9 chr5 27188063 27188174 -175897358 + MLT1J2 LTR MaLR 56 169 -281 1035 236 65 96 chr5 27189121 27189377 -175896155 + MLT2B1 LTR ERVL 3 265 -255 195 42 0 0 chr5 27189377 27189401 -175896131 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1035 236 65 96 chr5 27189401 27189626 -175895906 + MLT2B1 LTR ERVL 265 469 -51 521 15 15 0 chr5 27189626 27189692 -175895840 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 1035 236 65 96 chr5 27189692 27189743 -175895789 + MLT2B1 LTR ERVL 469 520 0 226 267 78 33 chr5 27191477 27191567 -175893965 - MLT1I LTR MaLR -243 166 73 23 54 0 0 chr5 27192567 27192604 -175892928 + AT_rich Low_complexity Low_complexity 1 37 0 305 174 116 0 chr5 27192796 27192882 -175892650 + L1MB3 LINE L1 6081 6176 -7 260 213 25 12 chr5 27193053 27193133 -175892399 + HAL1b LINE L1 1266 1346 -2 22 70 0 0 chr5 27193208 27193251 -175892281 + AT_rich Low_complexity Low_complexity 1 43 0 311 149 0 0 chr5 27194126 27194173 -175891359 + L1MA6 LINE L1 6062 6108 -192 1426 218 0 10 chr5 27194418 27194711 -175890821 + AluJo SINE Alu 2 291 -21 278 344 16 49 chr5 27194764 27194886 -175890646 - L2 LINE L2 -11 3261 3144 183 24 49 49 chr5 27195419 27195460 -175890072 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 472 134 0 0 chr5 27195464 27195531 -175890001 - AluSg/x SINE Alu -26 283 217 337 276 0 35 chr5 27195692 27195779 -175889753 + L2 LINE L2 3227 3310 -3 1942 123 97 32 chr5 27195859 27196201 -175889331 + THE1B LTR MaLR 1 364 0 210 358 132 48 chr5 27196622 27197287 -175888245 - L2 LINE L2 -978 2336 1616 1533 132 0 0 chr5 27199421 27199661 -175885871 + AluSq SINE Alu 68 307 0 462 79 0 0 chr5 27199759 27199822 -175885710 + (TA)n Simple_repeat Simple_repeat 2 64 0 337 349 46 46 chr5 27200583 27200801 -175884731 + MIR SINE MIR 45 262 0 263 49 24 0 chr5 27201014 27201055 -175884477 + (TA)n Simple_repeat Simple_repeat 1 42 0 4280 82 15 0 chr5 27201055 27201654 -175883878 - L1PA4 LINE L1 -19 6136 5529 1016 256 43 75 chr5 27201871 27202336 -175883196 + MLT1D LTR MaLR 3 452 -53 25 0 0 0 chr5 27203126 27203151 -175882381 + AT_rich Low_complexity Low_complexity 1 25 0 5272 48 0 0 chr5 27203471 27204115 -175881417 + L1PA5 LINE L1 5503 6146 -8 21 36 0 0 chr5 27204115 27204143 -175881389 + AT_rich Low_complexity Low_complexity 1 28 0 453 36 0 0 chr5 27204408 27204463 -175881069 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 459 293 7 0 chr5 27204994 27205141 -175880391 - MER110 LTR ERV1 -12 479 332 24 0 0 0 chr5 27205141 27205165 -175880367 + AT_rich Low_complexity Low_complexity 1 24 0 663 311 44 7 chr5 27205251 27205524 -175880008 - Charlie2 DNA MER1_type -2155 627 345 432 230 69 49 chr5 27205548 27205752 -175879780 - LTR37B LTR ERV1 -11 457 250 209 133 0 67 chr5 27205803 27205848 -175879684 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 2279 60 43 7 chr5 27206040 27206340 -175879192 - AluY SINE Alu 0 311 1 304 209 48 19 chr5 27206354 27206459 -175879073 - L1MD3 LINE L1 -8 7987 7880 * 673 273 25 50 chr5 27206457 27206699 -175878833 + L1MD3 LINE L1 6742 6977 -1018 184 273 0 0 chr5 27207030 27207074 -175878458 - L2 LINE L2 -7 3306 3263 23 33 0 0 chr5 27207688 27207718 -175877814 + AT_rich Low_complexity Low_complexity 1 30 0 597 261 96 43 chr5 27208856 27209091 -175876441 - MER110 LTR ERV1 -7 484 228 2355 90 3 0 chr5 27209091 27209390 -175876142 + AluSc SINE Alu 1 300 -9 597 261 96 43 chr5 27209390 27209457 -175876075 - MER110 LTR ERV1 -263 228 166 894 202 30 20 chr5 27209916 27210114 -175875418 - MER3 DNA MER1_type -5 204 5 450 114 0 0 chr5 27210983 27211053 -175874479 + (TG)n Simple_repeat Simple_repeat 2 71 0 264 256 12 24 chr5 27211464 27211546 -175873986 - MIR SINE MIR -5 257 177 813 271 28 9 chr5 27211713 27211931 -175873601 - MER58A DNA MER1_type -2 222 1 403 269 215 0 chr5 27212029 27212159 -175873373 - MER63A DNA MER1_type 0 210 53 652 238 21 0 chr5 27212666 27212809 -175872723 + AluJb SINE Alu 164 309 -3 279 350 96 0 chr5 27213186 27213363 -175872169 - LTR33 LTR ERVL -2 519 326 373 336 7 20 chr5 27213460 27213609 -175871923 - LTR33 LTR ERVL -374 147 1 447 204 11 0 chr5 27214718 27214806 -175870726 - MER72 LTR ERV1 -9 713 625 2618 84 24 50 chr5 27214806 27214925 -175870607 + L1PB1 LINE L1 5372 5493 -658 2105 113 0 0 chr5 27214925 27215233 -175870299 + AluY SINE Alu 1 308 0 2618 84 24 50 chr5 27215233 27215529 -175870003 + L1PB1 LINE L1 5493 5777 -374 312 27 0 0 chr5 27215534 27215571 -175869961 + (CA)n Simple_repeat Simple_repeat 2 38 0 271 265 66 0 chr5 27215981 27216147 -175869385 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 202 186 57 0 chr5 27216147 27216287 -175869245 + (TA)n Simple_repeat Simple_repeat 1 148 0 1549 73 0 0 chr5 27216287 27216492 -175869040 + L1PB1 LINE L1 5782 5986 -165 278 68 0 0 chr5 27216493 27216537 -175868995 + L1PB1 LINE L1 6104 6147 -4 25 0 0 0 chr5 27216540 27216565 -175868967 + AT_rich Low_complexity Low_complexity 1 25 0 252 325 76 25 chr5 27216703 27216860 -175868672 - MIR SINE MIR -19 243 79 282 240 31 61 chr5 27217236 27217309 -175868223 + MLT1J LTR MaLR 64 133 -317 2472 123 3 6 chr5 27217309 27217674 -175867858 - THE1B LTR MaLR 0 364 1 282 240 31 61 chr5 27217674 27217698 -175867834 + MLT1J LTR MaLR 133 156 -294 2832 268 82 21 chr5 27217746 27218824 -175866708 + L1MCb LINE L1 1 1143 -4902 2672 248 154 24 chr5 27218826 27218952 -175866580 + L1MD3 LINE L1 5186 4432 -1714 2216 76 13 3 chr5 27218952 27219253 -175866279 + AluY SINE Alu 1 304 -7 2672 248 154 24 chr5 27219253 27220360 -175865172 + L1MD3 LINE L1 4431 5392 -754 2439 202 87 25 chr5 27220355 27220989 -175864543 + L1MC3 LINE L1 7094 7766 -19 * 239 340 102 30 chr5 27221098 27221295 -175864237 + MLT1J2 LTR MaLR 240 450 0 270 207 92 46 chr5 27221471 27221558 -175863974 - L2 LINE L2 -41 3231 3141 1836 86 4 22 chr5 27221828 27222097 -175863435 + AluSg1 SINE Alu 1 264 -45 480 269 60 60 chr5 27222206 27222489 -175863043 - L1M4 LINE L1 -1210 4936 4654 301 293 9 9 chr5 27222815 27222931 -175862601 - L1MCc LINE L1 -6226 197 82 324 48 0 0 chr5 27223471 27223513 -175862019 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 372 298 32 25 chr5 27223592 27223750 -175861782 - MIR SINE MIR -3 259 101 650 249 58 40 chr5 27223791 27224012 -175861520 - MER20 DNA MER1_type 0 219 1 361 245 125 42 chr5 27225466 27225618 -175859914 - L1MC5 LINE L1 -45 7916 7743 1385 203 7 42 chr5 27225618 27225924 -175859608 + AluJb SINE Alu 1 295 -17 361 245 125 42 chr5 27225924 27225963 -175859569 - L1MC5 LINE L1 -218 7743 7709 266 194 14 0 chr5 27226195 27226267 -175859265 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 1653 258 100 21 chr5 27226287 27227013 -175858519 - L1ME2 LINE L1 -120 6324 5542 509 383 17 14 chr5 27227111 27227456 -175858076 + LTR16A LTR ERVL 105 450 0 423 231 103 0 chr5 27227659 27227776 -175857756 + MLT1H1 LTR MaLR 427 555 0 1026 297 93 48 chr5 27227780 27228638 -175856894 - L1ME2 LINE L1 -3006 3420 2602 2781 175 23 17 chr5 27228638 27229159 -175856373 + MER1A DNA MER1_type 1 524 -3 1026 297 93 48 chr5 27229159 27230292 -175855240 - L1ME2 LINE L1 -3824 2602 1171 209 238 63 0 chr5 27230365 27230428 -175855104 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 2164 224 76 39 chr5 27230685 27231242 -175854290 - L1MC2 LINE L1 -195 6429 5894 2069 148 39 20 chr5 27231242 27231599 -175853933 - THE1B LTR MaLR 0 364 1 11339 95 9 2 chr5 27231599 27233168 -175852364 - THE1B-int LTR MaLR 0 1580 1 1815 167 39 25 chr5 27233168 27233527 -175852005 - THE1B LTR MaLR 0 364 1 2164 224 76 39 chr5 27233527 27233678 -175851854 - L1MC2 LINE L1 -729 5895 5693 1478 157 111 98 chr5 27233675 27234154 -175851378 - L1MCa LINE L1 -4944 1482 998 * 1107 220 68 114 chr5 27234162 27234557 -175850975 + MSTD LTR MaLR 20 396 0 3834 187 54 67 chr5 27234557 27235520 -175850012 - L1MCa LINE L1 -5429 997 47 578 239 24 6 chr5 27235541 27235708 -175849824 - L1MC2 LINE L1 -2358 5707 5538 584 271 109 57 chr5 27235814 27236198 -175849334 - L1MC2 LINE L1 -5995 431 28 453 347 50 48 chr5 27236264 27236765 -175848767 - L1M4 LINE L1 -1313 4833 4332 233 307 85 20 chr5 27236885 27237038 -175848494 - L1M4 LINE L1 -1954 4192 4030 21 0 0 0 chr5 27287596 27287617 -175797915 + AT_rich Low_complexity Low_complexity 1 21 0 655 246 50 5 chr5 27287696 27287895 -175797637 - L1MA7 LINE L1 -12 6279 6072 21 36 0 0 chr5 27288138 27288166 -175797366 + AT_rich Low_complexity Low_complexity 1 28 0 1894 106 72 10 chr5 27289954 27290247 -175795285 - AluSx SINE Alu -1 311 1 1776 80 42 0 chr5 27290253 27290490 -175795042 - AluSg SINE Alu -63 247 1 425 327 64 88 chr5 27290512 27291062 -175794470 - L2 LINE L2 -51 3262 2735 261 0 0 0 chr5 27291258 27291287 -175794245 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 592 297 69 29 chr5 27291302 27291578 -175793954 - ERVL LTR ERVL -2116 3648 3362 357 333 32 20 chr5 27291642 27292018 -175793514 - ERVL LTR ERVL -2441 3213 2777 927 320 52 18 chr5 27292186 27292624 -175792908 - ERVL LTR ERVL -3192 2572 2120 478 280 25 13 chr5 27292676 27292833 -175792699 + LTR41 LTR ERVL 10 168 -605 18724 181 33 22 chr5 27292881 27296208 -175789324 - L1MA3 LINE L1 -1 7723 4435 2380 68 7 3 chr5 27296208 27296503 -175789029 - AluY SINE Alu -14 297 2 18724 181 33 22 chr5 27296503 27298080 -175787452 - L1MA3 LINE L1 -3289 4435 2877 2076 174 56 19 chr5 27298080 27298493 -175787039 - MSTA LTR MaLR 0 428 1 18724 181 33 22 chr5 27298493 27301108 -175784424 - L1MA3 LINE L1 -4847 2877 118 905 54 0 0 chr5 27301133 27301244 -175784288 + L1P1 LINE L1 5656 5766 -389 2252 79 3 0 chr5 27301248 27301538 -175783994 - AluSc SINE Alu -18 291 1 637 139 17 9 chr5 27301539 27301654 -175783878 - L1MA3 LINE L1 -7435 130 15 25 0 0 0 chr5 27302302 27302327 -175783205 + AT_rich Low_complexity Low_complexity 1 25 0 2002 320 56 40 chr5 27303234 27304170 -175781362 - L2 LINE L2 -552 2762 1812 273 57 0 0 chr5 27306213 27306248 -175779284 + (TAAAA)n Simple_repeat Simple_repeat 4 38 0 23 0 0 0 chr5 27307820 27307843 -175777689 + AT_rich Low_complexity Low_complexity 1 23 0 201 154 19 58 chr5 27307918 27307970 -175777562 + CT-rich Low_complexity Low_complexity 3 52 0 631 314 18 26 chr5 27308408 27308634 -175776898 - MIR SINE MIR -26 236 13 22 56 0 0 chr5 27308961 27308997 -175776535 + AT_rich Low_complexity Low_complexity 1 36 0 2398 212 27 14 chr5 27308997 27309619 -175775913 - L1 LINE L1 -754 5392 4763 335 147 13 119 chr5 27309614 27309723 -175775809 - L1PA8A LINE L1 -640 5491 5396 * 484 247 27 7 chr5 27309724 27309870 -175775662 + L1MB1 LINE L1 4462 4610 -1536 3006 162 19 6 chr5 27309889 27310425 -175775107 + L1MB1 LINE L1 5535 6077 -91 468 167 12 0 chr5 27310514 27310598 -175774934 + L1MC1 LINE L1 5427 5511 -822 1999 194 51 53 chr5 27310699 27311209 -175774323 + L1MC1 LINE L1 5516 6024 -309 * 4246 74 7 3 chr5 27311207 27311786 -175773746 + L1PA6 LINE L1 3524 4104 -2042 8797 77 28 0 chr5 27311787 27313743 -175771789 + L1PA6 LINE L1 4163 6149 -5 2197 79 7 3 chr5 27314700 27315003 -175770529 - L1PA7 LINE L1 -1 6153 5850 3666 67 8 2 chr5 27315003 27315496 -175770036 + L1P3 LINE L1 5317 5812 -342 26 0 0 0 chr5 27315563 27315589 -175769943 + AT_rich Low_complexity Low_complexity 1 26 0 29 0 0 0 chr5 27316439 27316468 -175769064 + AT_rich Low_complexity Low_complexity 1 29 0 1786 251 70 35 chr5 27317863 27318436 -175767096 + MLT1E LTR MaLR 1 593 0 423 0 0 0 chr5 27318576 27318623 -175766909 + (TG)n Simple_repeat Simple_repeat 2 48 0 589 127 3 7 chr5 27318662 27318772 -175766760 + L1P LINE L1 4981 5087 -1059 22 0 0 0 chr5 27318923 27318945 -175766587 + AT_rich Low_complexity Low_complexity 1 22 0 5317 105 112 29 chr5 27319018 27320095 -175765437 - MER11A LTR ERVK 0 1266 4 46 62 0 0 chr5 27320334 27320415 -175765117 + AT_rich Low_complexity Low_complexity 1 81 0 4358 181 9 11 chr5 27320492 27321785 -175763747 + L1P5 LINE L1 4364 5660 -491 28 0 0 0 chr5 27321825 27321853 -175763679 + AT_rich Low_complexity Low_complexity 1 28 0 3532 108 13 6 chr5 27321853 27322398 -175763134 - L1PB1 LINE L1 -3 6864 6316 14690 173 74 29 chr5 27322505 27328544 -175756988 - L1PB1 LINE L1 -567 6300 1 21 36 0 0 chr5 27328771 27328799 -175756733 + AT_rich Low_complexity Low_complexity 1 28 0 341 372 36 0 chr5 27329945 27330141 -175755391 + MIR SINE MIR 45 247 -15 414 280 46 74 chr5 27330430 27330798 -175754734 + MLT1H LTR MaLR 51 376 -33 23 54 0 0 chr5 27330880 27330917 -175754615 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr5 27330984 27331012 -175754520 + AT_rich Low_complexity Low_complexity 1 28 0 1447 251 19 40 chr5 27331031 27331400 -175754132 + MLT2D LTR ERVL 1 361 -53 785 253 96 37 chr5 27331400 27331724 -175753808 + MER2 DNA MER2_type 1 343 -1 1447 251 19 40 chr5 27331724 27331777 -175753755 + MLT2D LTR ERVL 361 414 0 2562 249 32 16 chr5 27331779 27332946 -175752586 + ERVL-D LTR ERVL 4 1262 -4502 2532 64 0 3 chr5 27332952 27333264 -175752268 - AluY SINE Alu 0 311 1 1543 194 7 26 chr5 27333278 27333582 -175751950 + ERVL LTR ERVL 4307 4604 -1160 327 237 102 46 chr5 27333582 27333715 -175751817 + MLT1A2 LTR MaLR 1 137 -244 31 26 0 0 chr5 27333726 27333764 -175751768 + AT_rich Low_complexity Low_complexity 1 38 0 633 262 15 0 chr5 27333855 27334015 -175751517 + MLT1A2 LTR MaLR 188 335 -39 210 171 0 0 chr5 27334271 27334312 -175751220 + (TG)n Simple_repeat Simple_repeat 1 41 0 1480 232 49 0 chr5 27334330 27334658 -175750874 + MER7A DNA MER2_type 4 345 -1 1750 185 0 3 chr5 27335151 27335448 -175750084 - AluJb SINE Alu -16 296 1 1124 274 36 27 chr5 27335481 27335846 -175749686 - MLT1A2 LTR MaLR -6 368 1 504 240 0 0 chr5 27336014 27336193 -175749339 + (TA)n Simple_repeat Simple_repeat 2 180 0 10464 238 34 9 chr5 27337063 27338076 -175747456 + L1M2 LINE L1 7 994 -5855 498 17 0 0 chr5 27338076 27338135 -175747397 + (CA)n Simple_repeat Simple_repeat 1 59 0 10464 238 34 9 chr5 27338135 27339514 -175746018 + L1M2 LINE L1 994 2458 -4391 3430 159 16 14 chr5 27339530 27340450 -175745082 + L1MA3 LINE L1 5225 6303 -2 3883 239 13 12 chr5 27340546 27341614 -175743918 - L1 LINE L1 -2081 4065 2997 4933 201 22 15 chr5 27341617 27343661 -175741871 + L1PA15 LINE L1 4100 6160 -5 261 242 0 0 chr5 27343670 27343718 -175741814 + (TA)n Simple_repeat Simple_repeat 1 51 -15 189 0 0 0 chr5 27343718 27343739 -175741793 + (TG)n Simple_repeat Simple_repeat 2 22 0 261 242 0 0 chr5 27343739 27343756 -175741776 + (TA)n Simple_repeat Simple_repeat 50 66 0 1762 153 17 3 chr5 27344015 27344309 -175741223 - AluJb SINE Alu -14 298 1 535 286 63 11 chr5 27344893 27345068 -175740464 + MIR SINE MIR 55 238 -24 21 36 0 0 chr5 27345990 27346018 -175739514 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr5 27346653 27346674 -175738858 + AT_rich Low_complexity Low_complexity 1 21 0 608 267 84 46 chr5 27346759 27346975 -175738557 - MER77 LTR ERV1 -6 599 407 619 234 82 65 chr5 27346984 27347168 -175738364 - MER77-int LTR ERV1 -1496 2695 2509 1858 264 70 60 chr5 27347168 27348406 -175737126 - MER77-int LTR ERV1 -1712 4974 1920 1527 281 17 12 chr5 27348430 27348847 -175736685 - MER77-int LTR ERV1 -3760 431 13 398 355 153 11 chr5 27348941 27349223 -175736309 - MER77 LTR ERV1 -6 599 278 313 301 0 0 chr5 27349686 27349759 -175735773 - MER2 DNA MER2_type 0 345 273 899 238 15 0 chr5 27349788 27349990 -175735542 - MER2 DNA MER2_type -139 206 2 287 175 0 0 chr5 27349990 27350053 -175735479 + L1MC4 LINE L1 6640 6702 -1340 339 232 0 0 chr5 27350058 27350140 -175735392 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 256 366 80 9 chr5 27350147 27350259 -175735273 - L2 LINE L2 -623 2691 2572 1904 197 33 20 chr5 27350673 27351064 -175734468 - MSTD LTR MaLR 0 396 1 466 210 68 74 chr5 27351384 27351537 -175733995 + MLT1D LTR MaLR 1 152 -353 1771 257 65 23 chr5 27351537 27352129 -175733403 + MER92B LTR ERV1 1 409 -3 1394 228 63 6 chr5 27352133 27352467 -175733065 + MLT1D LTR MaLR 153 505 0 1783 167 3 14 chr5 27352646 27352940 -175732592 + AluSx SINE Alu 1 291 -21 639 71 0 0 chr5 27352943 27353028 -175732504 + (TA)n Simple_repeat Simple_repeat 1 85 0 259 222 19 0 chr5 27353275 27353329 -175732203 - MER50 LTR ERV1 -23 711 657 * 2881 137 12 18 chr5 27353325 27353822 -175731710 - MER50 LTR ERV1 -240 494 1 858 289 52 25 chr5 27354307 27354671 -175730861 - MLT1A2 LTR MaLR 0 374 1 21 0 0 0 chr5 27354862 27354883 -175730649 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr5 27354929 27354967 -175730565 + AT_rich Low_complexity Low_complexity 1 38 0 326 318 47 47 chr5 27355299 27355467 -175730065 - L1ME LINE L1 -413 5708 5538 977 245 32 86 chr5 27355467 27355875 -175729657 + MLT1B LTR MaLR 5 390 0 326 318 47 47 chr5 27355875 27355917 -175729615 - L1ME LINE L1 -582 5539 5498 297 0 0 0 chr5 27355949 27355982 -175729550 + (CA)n Simple_repeat Simple_repeat 2 34 0 198 0 0 0 chr5 27355981 27356003 -175729529 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 668 131 0 0 chr5 27356527 27356626 -175728906 + HY3 scRNA scRNA 1 99 -2 291 157 0 0 chr5 27356639 27356690 -175728842 + (TA)n Simple_repeat Simple_repeat 2 52 0 2436 60 0 0 chr5 27357052 27357353 -175728179 - AluY SINE Alu -10 301 1 197 315 0 27 chr5 27357641 27357714 -175727818 + MIR SINE MIR 182 252 -10 1045 249 52 33 chr5 27357741 27358106 -175727426 + MER92A LTR ERV1 40 411 -1 2039 137 3 0 chr5 27359139 27359438 -175726094 + AluSp SINE Alu 1 300 -13 213 39 0 0 chr5 27359836 27359862 -175725670 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1852 268 52 14 chr5 27360522 27361112 -175724420 + L1M4 LINE L1 24 636 -5906 967 256 110 66 chr5 27361112 27361550 -175723982 - MLT1D LTR MaLR 0 505 49 905 251 89 20 chr5 27361555 27361612 -175723920 + L1M4 LINE L1 890 942 -5600 3594 104 22 4 chr5 27361612 27362159 -175723373 + L1PA13 LINE L1 5607 6163 0 905 251 89 20 chr5 27362159 27362399 -175723133 + L1M4 LINE L1 942 1218 -5324 1488 196 14 11 chr5 27362399 27362781 -175722751 + AluJb SINE Alu 6 388 0 905 251 89 20 chr5 27362781 27362828 -175722704 + L1M4 LINE L1 1218 1260 -5282 1021 237 11 38 chr5 27362829 27363095 -175722437 - MLT1B LTR MaLR 0 390 132 622 161 65 8 chr5 27363193 27363317 -175722215 - MLT1B LTR MaLR -259 131 1 1970 284 42 33 chr5 27363361 27364673 -175720859 + L1M4 LINE L1 1296 2772 -4053 1034 253 104 15 chr5 27364648 27365119 -175720413 + L1M4 LINE L1 3551 4063 -2581 * 198 0 0 0 chr5 27365337 27365359 -175720173 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 1504 147 4 11 chr5 27365360 27365633 -175719899 - L1MA7 LINE L1 -8 6283 6013 248 396 90 4 chr5 27365901 27366146 -175719386 - L1MEc LINE L1 -5952 444 179 548 220 167 12 chr5 27367147 27367359 -175718173 + L1MA8 LINE L1 6036 6272 -40 419 254 58 10 chr5 27368140 27368312 -175717220 - MER92B LTR ERV1 0 556 257 1160 236 143 11 chr5 27368483 27368524 -175717008 - MLT2D LTR ERVL -1 413 379 417 86 0 0 chr5 27368524 27368582 -175716950 + (TG)n Simple_repeat Simple_repeat 1 58 0 1160 236 143 11 chr5 27368582 27368905 -175716627 - MLT2D LTR ERVL -35 379 1 2140 96 0 0 chr5 27369404 27369715 -175715817 - AluSg SINE Alu 0 311 1 1446 121 52 20 chr5 27369859 27370108 -175715424 - L1PA11 LINE L1 0 6174 5918 1664 258 18 2 chr5 27370643 27371140 -175714392 - L1 LINE L1 -2848 3298 2794 3875 184 16 6 chr5 27371183 27371890 -175713642 - MER50 LTR ERV1 -20 714 1 3019 209 1 9 chr5 27371896 27372547 -175712985 - L1 LINE L1 -3351 2795 2150 1672 159 21 3 chr5 27372543 27372883 -175712649 + L1PBa LINE L1 1691 2036 -4827 * 3228 183 16 11 chr5 27372883 27373511 -175712021 - LTR10B-int LTR ERV1 -6014 635 5 2102 226 22 10 chr5 27373511 27374010 -175711522 - LTR10B LTR ERV1 0 505 1 1371 304 31 52 chr5 27374010 27374552 -175710980 + L1ME LINE L1 11 541 -6318 831 320 94 22 chr5 27374610 27375248 -175710284 + L1ME LINE L1 1705 2388 -4571 3034 296 59 56 chr5 27375439 27377532 -175708000 + L1ME LINE L1 2482 4552 -2405 518 212 58 48 chr5 27377540 27377729 -175707803 + L1MB7 LINE L1 5994 6184 0 1052 209 48 101 chr5 27377947 27378324 -175707208 + MLT1A2 LTR MaLR 2 358 -16 2321 86 0 6 chr5 27378414 27378727 -175706805 - AluY SINE Alu 0 311 1 1237 187 52 42 chr5 27379060 27379349 -175706183 + AluJo SINE Alu 1 292 -10 181 0 69 0 chr5 27379982 27380011 -175705521 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 496 269 70 26 chr5 27380102 27380329 -175705203 + L1ME LINE L1 6228 6464 -511 21 0 0 0 chr5 27380500 27380521 -175705011 + AT_rich Low_complexity Low_complexity 1 21 0 215 264 19 0 chr5 27380864 27380917 -175704615 + L2 LINE L2 2854 2907 -365 209 353 57 74 chr5 27381094 27381162 -175704370 + L2 LINE L2 2954 3022 -291 1198 213 77 81 chr5 27381162 27381631 -175703901 + MLT1C LTR MaLR 1 467 0 209 353 57 74 chr5 27381631 27381928 -175703604 + L2 LINE L2 3022 3313 0 360 195 11 35 chr5 27382322 27382409 -175703123 + L1P LINE L1 4573 4657 -1489 22 0 0 0 chr5 27382769 27382791 -175702741 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr5 27383167 27383196 -175702336 + (TG)n Simple_repeat Simple_repeat 2 30 0 1818 138 0 0 chr5 27383198 27383459 -175702073 + AluSq SINE Alu 1 261 -52 1185 310 29 36 chr5 27383474 27384106 -175701426 - L1ME2 LINE L1 -212 6021 5395 802 251 77 32 chr5 27384130 27384505 -175701027 - L1ME2 LINE L1 -855 5360 4969 1607 275 34 63 chr5 27384584 27384964 -175700568 - L1ME2 LINE L1 -1260 4955 4566 1924 250 72 27 chr5 27384964 27385587 -175699945 - MLT1E1 LTR MaLR -2 652 2 1607 275 34 63 chr5 27385587 27385842 -175699690 - L1ME2 LINE L1 -1649 4566 4305 2152 136 37 8 chr5 27385842 27386195 -175699337 + THE1B LTR MaLR 2 364 0 1607 275 34 63 chr5 27386195 27386574 -175698958 - L1ME2 LINE L1 -1910 4305 3969 702 295 84 37 chr5 27386594 27387027 -175698505 - L1ME2 LINE L1 -2763 3452 2976 2033 162 20 11 chr5 27387027 27387385 -175698147 + THE1B LTR MaLR 1 361 -3 702 295 84 37 chr5 27387385 27387439 -175698093 - L1ME2 LINE L1 -3239 2976 2926 512 383 66 27 chr5 27387637 27388047 -175697485 - L1ME2 LINE L1 -5932 464 39 215 162 27 54 chr5 27388232 27388306 -175697226 + A-rich Low_complexity Low_complexity 5 76 0 201 74 0 0 chr5 27388399 27388426 -175697106 + (TTA)n Simple_repeat Simple_repeat 2 28 0 917 215 138 0 chr5 27388429 27388675 -175696857 - AluJo SINE Alu -32 280 1 366 464 106 17 chr5 27388983 27389464 -175696068 + L1MC4a LINE L1 5513 6036 -1772 28 29 0 0 chr5 27389574 27389609 -175695923 + AT_rich Low_complexity Low_complexity 1 35 0 10980 151 14 12 chr5 27389849 27391119 -175694413 - L1PA10 LINE L1 0 6168 4901 1810 153 41 49 chr5 27391119 27391486 -175694046 + THE1B LTR MaLR 1 364 0 10980 151 14 12 chr5 27391486 27392965 -175692567 - L1PA10 LINE L1 -1267 4901 3394 25 31 0 0 chr5 27392998 27393030 -175692502 + AT_rich Low_complexity Low_complexity 1 32 0 240 287 72 62 chr5 27393170 27393379 -175692153 - L1ME LINE L1 -399 5765 5555 1590 188 0 4 chr5 27393668 27393940 -175691592 - AluSx SINE Alu -27 285 15 15796 206 30 22 chr5 27394462 27397212 -175688320 + L1P4 LINE L1 1542 4331 -1830 2548 45 0 3 chr5 27397212 27397524 -175688008 + AluY SINE Alu 1 311 0 15796 206 30 22 chr5 27397524 27398652 -175686880 + L1P4 LINE L1 4331 5448 -713 1479 86 14 14 chr5 27398652 27398873 -175686659 - pTR5 LTR ERV1 -2046 392 172 374 194 31 20 chr5 27398876 27398974 -175686558 - LTR30 LTR ERV1 -80 642 544 4670 133 58 33 chr5 27398975 27400071 -175685461 - pTR5 LTR ERV1 -414 2024 741 31 44 0 0 chr5 27400087 27400132 -175685400 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr5 27400282 27400303 -175685229 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr5 27400390 27400438 -175685094 + AT_rich Low_complexity Low_complexity 1 48 0 236 319 0 14 chr5 27401327 27401396 -175684136 + L1MC3 LINE L1 140 207 -6357 1770 142 9 41 chr5 27401400 27401717 -175683815 - AluSx SINE Alu -5 307 1 416 233 0 9 chr5 27401724 27401840 -175683692 + GA-rich Low_complexity Low_complexity 3 117 0 283 254 0 16 chr5 27401917 27401980 -175683552 + L1MC3 LINE L1 499 560 -5485 1064 281 45 36 chr5 27402085 27402904 -175682628 + L1MC3 LINE L1 572 1407 -4852 * 1139 265 106 15 chr5 27402901 27403924 -175681608 + L1MC3 LINE L1 2206 3323 -3241 6812 158 36 9 chr5 27403944 27405207 -175680325 - HSMAR2 DNA Mariner -1 1301 4 869 254 46 23 chr5 27405213 27405473 -175680059 + Tigger3(Golem) DNA MER2_type 2764 3029 0 401 230 42 24 chr5 27405473 27405638 -175679894 - L1M4 LINE L1 -3035 3111 2944 682 149 0 33 chr5 27405652 27405773 -175679759 - Tigger3(Golem) DNA MER2_type -266 2763 2647 1521 269 86 29 chr5 27405779 27406638 -175678894 + L1MC3 LINE L1 4277 5184 -1380 1489 239 119 35 chr5 27406640 27406841 -175678691 + L1MC3 LINE L1 5319 5502 -1062 2487 126 0 3 chr5 27406841 27407197 -175678335 + THE1A LTR MaLR 1 355 0 10772 116 7 4 chr5 27407197 27408772 -175676760 + THE1A-int LTR MaLR 1 1580 0 2444 119 6 0 chr5 27408772 27409125 -175676407 + THE1A LTR MaLR 1 355 0 1489 239 119 35 chr5 27409125 27409784 -175675748 + L1MC3 LINE L1 5501 5739 -825 11408 227 39 21 chr5 27409797 27411897 -175673635 + L1MA3 LINE L1 2215 4420 -1885 826 203 0 25 chr5 27411897 27412060 -175673472 + FRAM SINE Alu 1 159 -7 11408 227 39 21 chr5 27412060 27413980 -175671552 + L1MA3 LINE L1 4420 6303 -2 1008 234 58 24 chr5 27413998 27414327 -175671205 + L1MC3 LINE L1 6257 6596 -1607 448 264 137 22 chr5 27414319 27414815 -175670717 + L1M4 LINE L1 3122 3674 -2472 * 299 171 48 6 chr5 27414921 27415034 -175670498 + L1M4 LINE L1 3867 3977 -2169 1582 267 55 70 chr5 27415037 27416469 -175669063 + L1M4 LINE L1 4240 5644 -530 417 224 24 0 chr5 27416469 27416554 -175668978 - Tigger5 DNA MER2_type 0 2323 2237 21 36 0 0 chr5 27416927 27416955 -175668577 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr5 27416962 27416990 -175668542 + AT_rich Low_complexity Low_complexity 1 28 0 1262 109 6 0 chr5 27417142 27417316 -175668216 - AluSc SINE Alu -89 220 46 235 173 19 19 chr5 27417410 27417462 -175668070 + CT-rich Low_complexity Low_complexity 2 53 0 264 270 0 0 chr5 27417573 27417647 -175667885 - MER104 DNA Tc2 -71 109 36 2150 94 40 12 chr5 27417679 27418008 -175667524 - L1PA13 LINE L1 -9 6154 5817 922 192 100 78 chr5 27418278 27418559 -175666973 - AluJb SINE Alu -15 287 1 222 20 20 82 chr5 27418634 27418683 -175666849 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 27 49 0 0 chr5 27419094 27419135 -175666397 + AT_rich Low_complexity Low_complexity 1 41 0 423 0 0 0 chr5 27419619 27419666 -175665866 + (GA)n Simple_repeat Simple_repeat 1 47 0 301 152 0 0 chr5 27419924 27419970 -175665562 + MER57A LTR ERV1 177 222 -181 266 300 13 1 chr5 27420142 27420224 -175665308 + MER5A DNA MER1_type 22 99 -79 216 67 0 0 chr5 27420323 27420353 -175665179 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1096 171 40 6 chr5 27420363 27420682 -175664850 + MSTA LTR MaLR 1 424 -4 553 205 0 33 chr5 27420682 27420804 -175664728 - FLAM_C SINE Alu -25 118 1 324 0 0 0 chr5 27421525 27421561 -175663971 + (TC)n Simple_repeat Simple_repeat 1 36 0 360 43 0 0 chr5 27421733 27421779 -175663753 + (TA)n Simple_repeat Simple_repeat 1 46 0 26 0 0 0 chr5 27422071 27422097 -175663435 + AT_rich Low_complexity Low_complexity 1 26 0 23 68 0 0 chr5 27422507 27422551 -175662981 + AT_rich Low_complexity Low_complexity 1 44 0 227 197 45 15 chr5 27423015 27423081 -175662451 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 4625 62 3 2 chr5 27423207 27423847 -175661685 + L1PA7 LINE L1 5551 6154 0 1072 149 0 23 chr5 27423867 27424041 -175661491 + AluSg/x SINE Alu 129 298 -14 1930 155 0 0 chr5 27424051 27424341 -175661191 + AluSx SINE Alu 1 290 -22 2530 104 6 3 chr5 27424351 27424705 -175660827 + THE1A LTR MaLR 1 355 0 9898 109 73 0 chr5 27424705 27426177 -175659355 + THE1A-int LTR MaLR 1 1580 0 2623 99 3 0 chr5 27426177 27426531 -175659001 + THE1A LTR MaLR 1 355 0 2048 159 11 11 chr5 27426602 27426980 -175658552 + MER65A LTR ERV1 40 417 -28 29 47 0 0 chr5 27427707 27427750 -175657782 + AT_rich Low_complexity Low_complexity 1 43 0 652 283 48 53 chr5 27428346 27428781 -175656751 + L1ME1 LINE L1 4791 5223 -923 1469 224 102 100 chr5 27428802 27429496 -175656036 + L1ME1 LINE L1 5285 5962 -204 2199 124 0 10 chr5 27429496 27429810 -175655722 + AluSq SINE Alu 3 313 0 1469 224 102 100 chr5 27429810 27430005 -175655527 + L1ME1 LINE L1 5962 6155 -11 775 152 41 7 chr5 27430651 27430796 -175654736 + L1M2 LINE L1 5444 5593 -719 2216 227 98 73 chr5 27430809 27431218 -175654314 - L1PA15 LINE L1 -5 6160 5763 637 118 29 0 chr5 27431218 27431320 -175654212 - THE1C LTR MaLR -1 374 270 2216 227 98 73 chr5 27431320 27432036 -175653496 - L1PA15 LINE L1 -402 5763 4906 3546 36 32 0 chr5 27432054 27432496 -175653036 - L1PA4 LINE L1 -8 6147 5692 12879 30 1 2 chr5 27432497 27434383 -175651149 + L1PA4 LINE L1 3841 5722 -433 3445 232 14 11 chr5 27434363 27435224 -175650308 - L1 LINE L1 -1227 4919 4056 * 1981 173 26 0 chr5 27436727 27437079 -175648453 + THE1B LTR MaLR 1 361 -3 21 82 0 0 chr5 27437666 27437715 -175647817 + AT_rich Low_complexity Low_complexity 1 49 0 1779 93 8 31 chr5 27438015 27438272 -175647260 - AluY SINE Alu -9 302 52 1046 179 24 0 chr5 27438402 27438609 -175646923 - Tigger1 DNA MER2_type -4 2414 2203 718 195 0 0 chr5 27438611 27438734 -175646798 - Tigger1 DNA MER2_type -2282 136 14 3660 65 6 68 chr5 27438768 27439309 -175646223 - L1PA7 LINE L1 -12 6142 5636 22 0 0 0 chr5 27439685 27439707 -175645825 + AT_rich Low_complexity Low_complexity 1 22 0 2393 4 83 0 chr5 27440149 27440427 -175645105 - AluY SINE Alu -10 301 1 23 0 0 0 chr5 27441314 27441337 -175644195 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr5 27441814 27441842 -175643690 + AT_rich Low_complexity Low_complexity 1 28 0 40 83 0 0 chr5 27441925 27442021 -175643511 + AT_rich Low_complexity Low_complexity 1 96 0 1481 101 0 5 chr5 27442496 27442694 -175642838 - AluSq SINE Alu -15 298 102 481 241 8 72 chr5 27444920 27445156 -175640376 - L1MA9 LINE L1 -40 6272 6052 908 207 11 2 chr5 27445157 27449094 -175636438 - ALR/Alpha Satellite centromeric 0 3971 1 208 176 0 59 chr5 27449105 27449173 -175636359 + (TA)n Simple_repeat Simple_repeat 2 65 0 827 236 7 3 chr5 27449173 27451414 -175634118 - ALR/Alpha Satellite centromeric -5 2251 1 925 221 11 4 chr5 27451429 27455084 -175630448 - ALR/Alpha Satellite centromeric 0 3678 1 878 223 6 2 chr5 27455096 27456445 -175629087 - ALR/Alpha Satellite centromeric 0 1355 1 885 227 6 4 chr5 27456462 27457274 -175628258 - ALR/Alpha Satellite centromeric -4 813 1 6200 79 5 3 chr5 27457275 27458709 -175626823 + L1PA7 LINE L1 4606 6044 -110 996 212 13 4 chr5 27458709 27463143 -175622389 - ALR/Alpha Satellite centromeric 0 6650 1836 2430 72 3 0 chr5 27463143 27463447 -175622085 + AluY SINE Alu 1 305 -6 996 212 13 4 chr5 27463447 27465300 -175620232 - ALR/Alpha Satellite centromeric -4814 1836 1 936 142 65 0 chr5 27465870 27466025 -175619507 + AluSg/x SINE Alu 134 298 -14 23 33 0 0 chr5 27466257 27466287 -175619245 + AT_rich Low_complexity Low_complexity 1 30 0 3882 213 28 44 chr5 27466369 27468056 -175617476 - L1MA9 LINE L1 -38 6274 4561 1981 132 7 3 chr5 27468056 27468352 -175617180 + AluSx SINE Alu 1 297 -15 3882 213 28 44 chr5 27468352 27468513 -175617019 - L1MA9 LINE L1 -1751 4561 4399 1613 143 42 65 chr5 27468513 27468732 -175616800 - THE1C LTR MaLR 0 375 167 2539 27 3 0 chr5 27468732 27469027 -175616505 + AluY SINE Alu 1 296 -15 1613 143 42 65 chr5 27469027 27469191 -175616341 - THE1C LTR MaLR -208 167 1 3882 213 28 44 chr5 27469191 27469440 -175616092 - L1MA9 LINE L1 -1913 4399 4215 2094 113 3 13 chr5 27469766 27470076 -175615456 + AluSx SINE Alu 1 307 -5 3881 186 17 13 chr5 27470174 27470952 -175614580 - L1PB4 LINE L1 -14 6142 5362 196 50 0 50 chr5 27471180 27471220 -175614312 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2679 186 8 2 chr5 27471224 27471707 -175613825 - THE1C-int LTR MaLR -124 1527 1042 294 132 0 0 chr5 27471712 27471765 -175613767 + (CA)n Simple_repeat Simple_repeat 1 53 0 25 51 0 0 chr5 27471983 27472022 -175613510 + AT_rich Low_complexity Low_complexity 1 39 0 204 40 0 0 chr5 27472268 27472293 -175613239 + (T)n Simple_repeat Simple_repeat 1 25 0 465 269 25 0 chr5 27475703 27475822 -175609710 - MIR SINE MIR -107 155 34 1819 178 3 13 chr5 27475877 27476186 -175609346 - AluSx SINE Alu -4 308 3 1576 179 7 23 chr5 27476268 27476569 -175608963 - AluJo SINE Alu -12 300 5 696 257 34 63 chr5 27476662 27476899 -175608633 + MSTD LTR MaLR 160 389 -7 255 103 0 0 chr5 27477337 27477376 -175608156 + (TG)n Simple_repeat Simple_repeat 2 40 0 369 0 0 0 chr5 27477447 27477488 -175608044 + (CA)n Simple_repeat Simple_repeat 2 42 0 634 157 39 39 chr5 27477845 27477998 -175607534 - L1MA5 LINE L1 -5 6295 6143 1978 208 5 5 chr5 27478008 27478407 -175607125 - L1PB4 LINE L1 -1229 4917 4519 1381 188 7 57 chr5 27478404 27478810 -175606722 - L1P LINE L1 -915 5231 4864 * 696 150 7 52 chr5 27478810 27478959 -175606573 + L1MA10 LINE L1 6178 6323 -11 21 57 0 0 chr5 27479084 27479119 -175606413 + AT_rich Low_complexity Low_complexity 1 35 0 332 221 15 15 chr5 27479531 27479667 -175605865 + (TA)n Simple_repeat Simple_repeat 2 137 0 4208 200 27 17 chr5 27480339 27480650 -175604882 + L1P4 LINE L1 4271 4578 -1588 1687 151 76 25 chr5 27480650 27481007 -175604525 - THE1C LTR MaLR 0 375 1 4208 200 27 17 chr5 27481007 27482103 -175603429 + L1P4 LINE L1 4578 5687 -479 425 229 21 0 chr5 27482109 27482205 -175603327 - AluJ/FLAM SINE Alu -213 99 2 23 33 0 0 chr5 27482442 27482472 -175603060 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr5 27482598 27482636 -175602896 + AT_rich Low_complexity Low_complexity 1 38 0 376 347 12 12 chr5 27482699 27482775 -175602757 + GA-rich Low_complexity Low_complexity 3 78 -91 2418 64 0 0 chr5 27482775 27483070 -175602462 + AluY SINE Alu 1 295 -16 376 347 12 12 chr5 27483070 27483160 -175602372 + GA-rich Low_complexity Low_complexity 77 169 0 331 233 22 0 chr5 27483491 27483581 -175601951 - HSMAR2 DNA Mariner -2 1300 1209 281 178 0 0 chr5 27483569 27483614 -175601918 - Alu SINE Alu -256 45 1 * 12893 93 26 13 chr5 27483614 27485542 -175599990 - LTR2-int LTR ERV1 -1874 3343 1391 2465 185 17 62 chr5 27485517 27485547 -175599985 - LTR2-int LTR ERV1 -4650 567 537 * 1260 227 125 10 chr5 27485547 27485948 -175599584 - LTR2 LTR ERV1 0 449 3 2465 185 17 62 chr5 27485948 27486511 -175599021 - LTR2-int LTR ERV1 -4680 537 1 1649 189 3 66 chr5 27486511 27486877 -175598655 - MER61A LTR ERV1 0 343 1 893 117 61 104 chr5 27486877 27486996 -175598536 - HSMAR2 DNA Mariner -1080 222 99 2109 75 0 0 chr5 27486996 27487263 -175598269 + AluY SINE Alu 40 306 -5 893 117 61 104 chr5 27487263 27487322 -175598210 - HSMAR2 DNA Mariner -1203 99 53 1885 120 29 11 chr5 27487322 27487627 -175597905 - AluSc SINE Alu 0 310 1 893 117 61 104 chr5 27487627 27487676 -175597856 - HSMAR2 DNA Mariner -1249 53 3 336 127 0 0 chr5 27487678 27487733 -175597799 + (TG)n Simple_repeat Simple_repeat 1 55 0 1581 184 3 14 chr5 27488111 27488394 -175597138 - AluJb SINE Alu -22 290 11 256 269 32 21 chr5 27488536 27488629 -175596903 - HsTC2 DNA Tc2 -5 1893 1800 318 300 14 36 chr5 27488641 27488781 -175596751 - HsTC2 DNA Tc2 -309 1589 1277 21 71 0 0 chr5 27488782 27488824 -175596708 + AT_rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr5 27489209 27489253 -175596279 + AT_rich Low_complexity Low_complexity 1 44 0 417 259 6 82 chr5 27489287 27489457 -175596075 + LTR16A LTR ERVL 35 191 -259 29 28 0 0 chr5 27489965 27490001 -175595531 + AT_rich Low_complexity Low_complexity 1 36 0 226 229 66 0 chr5 27490492 27490553 -175594979 - MLT1H LTR MaLR -6 543 479 210 37 0 0 chr5 27490954 27490981 -175594551 + (TG)n Simple_repeat Simple_repeat 2 28 0 3663 261 28 37 chr5 27491430 27491855 -175593677 + L1 LINE L1 1978 2405 -3741 2023 152 0 0 chr5 27491855 27492152 -175593380 - AluSx SINE Alu -15 297 1 3663 261 28 37 chr5 27492152 27493303 -175592229 + L1 LINE L1 2405 3510 -2636 * 3747 109 0 28 chr5 27493302 27493881 -175591651 - L1PA7 LINE L1 -3538 2608 2046 18642 103 1 12 chr5 27493882 27497424 -175588108 + L1PA7 LINE L1 2606 6152 -2 1260 236 21 41 chr5 27497424 27497763 -175587769 + L1PA16 LINE L1 3780 4111 -2035 4820 187 27 24 chr5 27497763 27499167 -175586365 + L1PA16 LINE L1 4763 6163 -3 22 70 0 0 chr5 27499178 27499221 -175586311 + AT_rich Low_complexity Low_complexity 1 43 0 197 354 163 26 chr5 27499295 27499761 -175585771 - L2 LINE L2 -693 2621 2092 21 0 0 0 chr5 27500904 27500925 -175584607 + AT_rich Low_complexity Low_complexity 1 21 0 305 238 0 0 chr5 27501166 27501246 -175584286 - MIR SINE MIR 0 262 183 29 0 0 0 chr5 27501374 27501403 -175584129 + AT_rich Low_complexity Low_complexity 1 29 0 8034 157 122 23 chr5 27502812 27503005 -175582527 - Tigger1 DNA MER2_type -1 2417 2245 1507 176 6 73 chr5 27503005 27503335 -175582197 + AluJb SINE Alu 2 309 -3 8034 157 122 23 chr5 27503335 27504811 -175580721 - Tigger1 DNA MER2_type -173 2245 582 29 0 0 0 chr5 27504811 27504840 -175580692 + AT_rich Low_complexity Low_complexity 1 29 0 4401 128 28 5 chr5 27504905 27505657 -175579875 - L1MA4A LINE L1 0 6303 5535 213 316 13 26 chr5 27506163 27506239 -175579293 + L2 LINE L2 3198 3272 0 4364 185 45 54 chr5 27507116 27508346 -175577186 - L1MA10 LINE L1 -4 6330 5103 1669 116 3 104 chr5 27508427 27508772 -175576760 + L1PB1 LINE L1 5836 6145 -6 23 33 0 0 chr5 27509101 27509131 -175576401 + AT_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr5 27509436 27509471 -175576061 + AT_rich Low_complexity Low_complexity 1 35 0 223 287 59 40 chr5 27509577 27509678 -175575854 - L2 LINE L2 -11 3302 3200 235 221 0 19 chr5 27509942 27510046 -175575486 + GA-rich Low_complexity Low_complexity 3 104 0 27 62 0 0 chr5 27510556 27510604 -175574928 + AT_rich Low_complexity Low_complexity 1 48 0 23 0 0 0 chr5 27511588 27511611 -175573921 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr5 27511725 27511747 -175573785 + AT_rich Low_complexity Low_complexity 1 22 0 949 276 22 60 chr5 27511812 27512225 -175573307 + MLT2C1 LTR ERVL 1 397 0 317 325 0 17 chr5 27512226 27512343 -175573189 + ERVL-C1 LTR ERVL 3 117 -5647 1019 251 45 57 chr5 27512498 27512852 -175572680 - MLT1B LTR MaLR 0 390 41 822 345 29 11 chr5 27512907 27513258 -175572274 + ERVL-C1 LTR ERVL 346 702 -5062 789 270 72 4 chr5 27513277 27513540 -175571992 + ERVL-C1 LTR ERVL 817 1097 -4667 912 177 14 14 chr5 27513579 27513794 -175571738 - L1P LINE L1 -751 5395 5181 7324 203 19 33 chr5 27513895 27515628 -175569904 - L1P LINE L1 -1269 4877 3169 10100 237 55 58 chr5 27515748 27520951 -175564581 - L1PA12 LINE L1 -2391 5193 5 1138 309 34 2 chr5 27520960 27521368 -175564164 + ERVL-C1 LTR ERVL 1101 1521 -4243 3977 119 10 15 chr5 27521369 27521743 -175563789 + LTR43 LTR ERV1 1 372 -230 2395 140 3 3 chr5 27521743 27522107 -175563425 + THE1B LTR MaLR 1 364 0 3977 119 10 15 chr5 27522107 27522335 -175563197 + LTR43 LTR ERV1 372 600 -2 655 239 0 0 chr5 27522379 27522517 -175563015 + ERVL-C1 LTR ERVL 1576 1713 -4051 311 281 31 10 chr5 27522627 27522723 -175562809 + MLT2E LTR ERVL 450 547 -81 2287 149 3 14 chr5 27522742 27523110 -175562422 + THE1B LTR MaLR 1 364 0 3692 96 15 4 chr5 27524317 27524850 -175560682 + L1MA1 LINE L1 5760 6298 -4 22 35 0 0 chr5 27524850 27524879 -175560653 + AT_rich Low_complexity Low_complexity 1 29 0 267 192 164 0 chr5 27525148 27525221 -175560311 + MLT1D LTR MaLR 12 96 -409 363 157 0 71 chr5 27525242 27525312 -175560220 + Tigger3b DNA MER2_type 38 102 -1129 4562 137 53 45 chr5 27525325 27526033 -175559499 + Tigger3b DNA MER2_type 302 1021 -2007 2035 146 3 3 chr5 27526033 27526342 -175559190 + AluSx SINE Alu 1 309 -3 4562 137 53 45 chr5 27526342 27526555 -175558977 + Tigger3b DNA MER2_type 1021 1231 0 287 253 55 22 chr5 27526556 27526647 -175558885 + MLT1D LTR MaLR 102 195 -310 1276 196 42 42 chr5 27526679 27526782 -175558750 + AluJb SINE Alu 17 119 -191 213 39 0 0 chr5 27526782 27526808 -175558724 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1276 196 42 42 chr5 27526808 27526998 -175558534 + AluJb SINE Alu 118 310 0 1883 238 92 23 chr5 27527160 27527690 -175557842 - MER77 LTR ERV1 -4 601 35 2349 161 11 39 chr5 27527826 27528266 -175557266 - MSTC LTR MaLR 0 428 1 1884 189 20 23 chr5 27528422 27528813 -175556719 - MLT1B LTR MaLR 0 390 1 203 103 26 26 chr5 27529167 27529206 -175556326 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr5 27529915 27529937 -175555595 + AT_rich Low_complexity Low_complexity 1 22 0 1960 203 8 6 chr5 27531040 27531404 -175554128 + MLT1A1 LTR MaLR 1 365 0 386 343 42 7 chr5 27532627 27532770 -175552762 - MIR SINE MIR -79 183 36 46 33 0 0 chr5 27534905 27534965 -175550567 + AT_rich Low_complexity Low_complexity 1 60 0 439 302 38 13 chr5 27535033 27535192 -175550340 - LTR33 LTR ERVL -61 460 298 1606 236 37 8 chr5 27535252 27535633 -175549899 - L1M1 LINE L1 -7160 405 14 602 107 0 115 chr5 27535689 27535811 -175549721 - MER50 LTR ERV1 -130 604 497 435 298 107 17 chr5 27536539 27536717 -175548815 - MIR SINE MIR -68 194 1 23 0 0 0 chr5 27537735 27537758 -175547774 + AT_rich Low_complexity Low_complexity 1 23 0 750 239 0 30 chr5 27537769 27537936 -175547596 + FRAM SINE Alu 1 162 -14 698 330 44 39 chr5 27538381 27538432 -175547100 - L2 LINE L2 -2066 1248 1199 432 0 0 0 chr5 27538432 27538480 -175547052 + (TG)n Simple_repeat Simple_repeat 2 49 0 698 330 44 39 chr5 27538480 27538816 -175546716 - L2 LINE L2 -2115 1199 859 213 299 77 80 chr5 27538829 27539103 -175546429 + L2 LINE L2 3028 3300 -13 23 0 0 0 chr5 27539479 27539502 -175546030 + AT_rich Low_complexity Low_complexity 1 23 0 910 196 43 149 chr5 27540552 27540920 -175544612 - MLT1A2 LTR MaLR -42 332 4 1858 174 0 0 chr5 27542055 27542348 -175543184 + AluSx SINE Alu 1 293 -19 5237 115 7 63 chr5 27542499 27543446 -175542086 + L1P LINE L1 3235 4128 -2018 15817 81 2 11 chr5 27543446 27545529 -175540003 - HERVL LTR ERVL -1035 4619 2557 7824 87 35 13 chr5 27545526 27546656 -175538876 - HERVL LTR ERVL -4499 1155 1 * 231 210 32 0 chr5 27546693 27546755 -175538777 - L1MC4 LINE L1 -1339 6703 6640 2723 98 35 8 chr5 27546761 27547159 -175538373 - MLT2A1 LTR ERVL -35 409 1 23 54 0 0 chr5 27547224 27547261 -175538271 + AT_rich Low_complexity Low_complexity 1 37 0 243 0 0 0 chr5 27547600 27547627 -175537905 + (A)n Simple_repeat Simple_repeat 1 27 0 33 0 0 0 chr5 27548034 27548067 -175537465 + AT_rich Low_complexity Low_complexity 1 33 0 2018 141 19 50 chr5 27549881 27550257 -175535275 - THE1B LTR MaLR 0 364 1 10884 115 11 5 chr5 27550257 27551827 -175533705 - THE1B-int LTR MaLR 0 1580 1 960 97 35 7 chr5 27551847 27551991 -175533541 - THE1B LTR MaLR -215 149 2 2145 90 0 31 chr5 27552013 27552331 -175533201 + AluY SINE Alu 1 309 0 455 279 60 34 chr5 27552675 27552944 -175532588 - HAL1b LINE L1 -861 487 212 1101 288 21 37 chr5 27553125 27553504 -175532028 - MLT1D LTR MaLR -111 394 22 2307 93 3 3 chr5 27553840 27554151 -175531381 - AluY SINE Alu 0 311 1 208 227 27 13 chr5 27555135 27555210 -175530322 + (TA)n Simple_repeat Simple_repeat 2 77 0 27 62 0 0 chr5 27555366 27555414 -175530118 + AT_rich Low_complexity Low_complexity 1 48 0 1088 237 63 4 chr5 27555823 27556093 -175529439 + L1MCa LINE L1 29 314 -6112 481 212 51 8 chr5 27556077 27556195 -175529337 - L1MCa LINE L1 -5798 628 506 * 2000 216 40 27 chr5 27556251 27556729 -175528803 + L1MCa LINE L1 315 798 -5628 1475 207 28 3 chr5 27556744 27557034 -175528498 + L1MC1 LINE L1 5432 5728 -605 2084 170 38 19 chr5 27557040 27557460 -175528072 + MSTB1 LTR MaLR 5 364 0 691 159 38 0 chr5 27557460 27557592 -175527940 + L1MC1 LINE L1 5745 5881 -452 35 40 0 40 chr5 27557607 27557682 -175527850 + AT_rich Low_complexity Low_complexity 1 72 0 429 263 62 70 chr5 27558043 27558286 -175527246 + L1MCa LINE L1 3037 3277 -3149 757 283 76 39 chr5 27558318 27558856 -175526676 + L1MCa LINE L1 3459 4016 -2410 2097 125 0 3 chr5 27558966 27559251 -175526281 + AluSx SINE Alu 1 286 -26 330 98 0 0 chr5 27559251 27559302 -175526230 + (CATA)n Simple_repeat Simple_repeat 2 52 0 722 242 32 44 chr5 27560830 27561105 -175524427 + MLT1B LTR MaLR 123 390 0 304 255 64 0 chr5 27561126 27561220 -175524312 - L1MC4 LINE L1 -1328 6714 6615 274 192 14 14 chr5 27561241 27561314 -175524218 + (TA)n Simple_repeat Simple_repeat 2 74 0 387 196 130 7 chr5 27561327 27561465 -175524067 + L1MC4 LINE L1 7014 7168 -874 1033 213 25 43 chr5 27561531 27561808 -175523724 + MLT1A1 LTR MaLR 1 272 -93 196 304 43 0 chr5 27561843 27561912 -175523620 + L2 LINE L2 2006 2077 -1237 2121 128 0 0 chr5 27562071 27562376 -175523156 - AluSx SINE Alu -7 305 1 1725 169 7 7 chr5 27563312 27563608 -175521924 - AluSx SINE Alu -16 296 1 405 0 0 0 chr5 27563681 27563726 -175521806 + (TG)n Simple_repeat Simple_repeat 2 46 0 1388 177 63 37 chr5 27563809 27564108 -175521424 + AluJb SINE Alu 3 309 -3 2243 94 7 0 chr5 27565004 27565290 -175520242 - AluSx SINE Alu -20 292 5 22 35 0 0 chr5 27565470 27565499 -175520033 + AT_rich Low_complexity Low_complexity 1 29 0 759 176 0 55 chr5 27565507 27565689 -175519843 - FAM SINE Alu -3 172 1 256 268 112 6 chr5 27566350 27566529 -175519003 + L1ME4a LINE L1 5745 5942 -179 2151 113 10 0 chr5 27566677 27566968 -175518564 + AluSg SINE Alu 1 294 -16 859 299 95 38 chr5 27567143 27567587 -175517945 + MLT1J LTR MaLR 32 500 -11 1093 135 5 25 chr5 27567898 27568098 -175517434 - L1P LINE L1 -2149 3997 3802 1260 131 5 15 chr5 27568099 27568305 -175517227 - L1P LINE L1 -3488 2658 2455 393 175 25 0 chr5 27568348 27568428 -175517104 - L1P LINE L1 -3825 2321 2240 2558 98 3 11 chr5 27568428 27568786 -175516746 - THE1A LTR MaLR 0 355 1 10961 105 3 9 chr5 27568786 27570375 -175515157 - THE1A-int LTR MaLR 0 1580 1 2358 77 15 6 chr5 27570375 27570702 -175514830 - THE1A LTR MaLR 0 355 26 256 177 25 13 chr5 27571720 27571871 -175513661 + (TA)n Simple_repeat Simple_repeat 1 152 0 309 253 26 103 chr5 27571913 27572107 -175513425 - MLT1J2 LTR MaLR -8 442 264 263 231 24 0 chr5 27572171 27572230 -175513302 - MLT1J LTR MaLR -287 192 101 181 397 103 22 chr5 27572407 27572543 -175512989 + L2 LINE L2 3125 3271 -1 507 271 73 7 chr5 27572778 27572929 -175512603 + MIR3 SINE MIR 21 181 -27 315 345 28 5 chr5 27573337 27573500 -175512032 + MIR SINE MIR 20 183 -65 412 296 17 9 chr5 27574584 27574699 -175510833 - L2 LINE L2 -11 3302 3187 1358 181 0 45 chr5 27576664 27576929 -175508603 - AluJo SINE Alu -18 294 42 245 234 31 0 chr5 27583676 27583740 -175501792 + L1ME3A LINE L1 6097 6162 -8 1606 169 7 28 chr5 27584739 27585023 -175500509 + AluJo SINE Alu 13 290 -22 2375 85 7 0 chr5 27585528 27585821 -175499711 + AluSg SINE Alu 1 295 -15 30 0 0 0 chr5 27586032 27586062 -175499470 + AT_rich Low_complexity Low_complexity 1 30 0 1876 148 6 19 chr5 27586075 27586386 -175499146 + AluSx SINE Alu 1 307 -5 313 307 67 22 chr5 27587800 27587979 -175497553 - L2 LINE L2 -512 2802 2616 542 329 50 4 chr5 27588083 27588323 -175497209 - L2 LINE L2 -1899 1415 1165 319 286 161 26 chr5 27590172 27590364 -175495168 + L2 LINE L2 2437 2654 -660 698 201 62 6 chr5 27590421 27590600 -175494932 + MER5A DNA MER1_type 1 189 0 249 250 0 0 chr5 27591221 27591281 -175494251 - L2 LINE L2 -219 3053 2994 238 338 46 28 chr5 27591455 27591875 -175493657 - L2 LINE L2 -467 2847 2361 1816 184 0 3 chr5 27594002 27594296 -175491236 + AluJo SINE Alu 1 293 -19 1623 81 0 5 chr5 27595009 27595231 -175490301 - pTR5 LTR ERV1 -2046 392 172 377 248 10 0 chr5 27595234 27595335 -175490197 - LTR30 LTR ERV1 -80 642 541 1385 137 81 53 chr5 27595336 27595621 -175489911 - pTR5 LTR ERV1 -417 2021 1729 584 129 0 0 chr5 27595904 27595997 -175489535 - AluSg/x SINE Alu 0 309 217 225 211 56 42 chr5 27598367 27598438 -175487094 + LTR16A1 LTR ERVL 59 130 -327 839 223 45 36 chr5 27598488 27598735 -175486797 + LTR16A1 LTR ERVL 209 457 0 887 146 139 6 chr5 27598748 27598913 -175486619 - MER5A DNA MER1_type -2 187 1 2138 145 3 0 chr5 27601429 27601739 -175483793 + AluJo SINE Alu 1 311 -1 2133 114 0 26 chr5 27601739 27602046 -175483486 + AluSx SINE Alu 1 300 -12 386 314 46 66 chr5 27603372 27603429 -175482103 + L1MEc LINE L1 1253 1310 -5086 2260 81 10 17 chr5 27603429 27603724 -175481808 + AluSq SINE Alu 2 294 -19 386 314 46 66 chr5 27603724 27604163 -175481369 + L1MEc LINE L1 1310 1739 -4657 580 180 0 0 chr5 27604477 27604577 -175480955 - LTR12 LTR ERV1 0 714 615 259 314 17 0 chr5 27604579 27604697 -175480835 - LTR30 LTR ERV1 -79 643 524 1406 87 3 176 chr5 27604697 27605009 -175480523 - LTR12 LTR ERV1 -456 258 1 541 278 82 76 chr5 27605071 27605664 -175479868 + L1MEc LINE L1 2180 2741 -3474 2158 81 7 45 chr5 27605664 27605973 -175479559 + AluSg SINE Alu 1 297 -13 541 278 82 76 chr5 27605973 27606249 -175479283 + L1MEc LINE L1 2741 3014 -3201 1385 248 103 59 chr5 27606268 27607219 -175478313 + L1MB8 LINE L1 5193 6175 -3 192 40 0 0 chr5 27607865 27607890 -175477642 + (A)n Simple_repeat Simple_repeat 1 25 0 1555 197 4 4 chr5 27608034 27608313 -175477219 + AluJo SINE Alu 1 279 -33 2306 89 0 13 chr5 27608483 27608785 -175476747 - AluY SINE Alu -13 298 1 2049 119 0 7 chr5 27609035 27609328 -175476204 + AluY SINE Alu 5 295 -16 274 320 25 0 chr5 27609507 27609629 -175475903 - LTR67 LTR ERVL -2 555 431 1539 164 26 44 chr5 27609865 27610255 -175475277 + pTR5 LTR ERV1 743 1125 -1313 187 233 0 0 chr5 27710509 27710552 -175374980 - L2 LINE L2 -8 3305 3263 23 33 0 0 chr5 27710673 27710703 -175374829 + AT_rich Low_complexity Low_complexity 1 30 0 378 0 0 0 chr5 27710736 27710778 -175374754 + (TG)n Simple_repeat Simple_repeat 1 42 0 22 0 0 0 chr5 27710895 27710917 -175374615 + AT_rich Low_complexity Low_complexity 1 22 0 181 258 56 101 chr5 27712587 27712676 -175372856 - MIR SINE MIR -99 163 79 1429 171 50 64 chr5 27713705 27714062 -175371470 + THE1C LTR MaLR 3 354 -21 21 0 0 0 chr5 27714290 27714311 -175371221 + AT_rich Low_complexity Low_complexity 1 21 0 254 309 47 27 chr5 27714618 27714767 -175370765 + MLT1H LTR MaLR 30 181 -368 298 256 73 0 chr5 27715052 27715134 -175370398 - L1MC/D LINE L1 -2338 5470 5383 2320 86 0 10 chr5 27715540 27715841 -175369691 - AluY SINE Alu -13 298 1 21 57 0 0 chr5 27715926 27715961 -175369571 + AT_rich Low_complexity Low_complexity 1 35 0 479 231 189 18 chr5 27716452 27716621 -175368911 + MER58A DNA MER1_type 27 224 0 396 293 95 64 chr5 27716697 27716980 -175368552 - L1MEd LINE L1 -4879 1240 949 223 203 29 29 chr5 27717129 27717198 -175368334 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 16646 205 22 11 chr5 27718766 27722697 -175362835 - L1PA14 LINE L1 -3 7596 3708 1959 134 0 0 chr5 27722697 27722973 -175362559 - AluSg SINE Alu -10 300 25 16646 205 22 11 chr5 27722973 27723119 -175362413 - L1PA14 LINE L1 -3891 3708 3565 204 97 0 0 chr5 27723119 27723150 -175362382 + (TG)n Simple_repeat Simple_repeat 2 32 0 1794 32 9 0 chr5 27723155 27723374 -175362158 - L1PA4 LINE L1 -3 6152 5932 16646 205 22 11 chr5 27723374 27724215 -175361317 - L1PA14 LINE L1 -4037 3562 2617 1525 168 39 13 chr5 27724207 27724660 -175360872 - L1M2 LINE L1 -728 5572 5113 * 251 294 29 0 chr5 27724660 27724728 -175360804 - L1ME LINE L1 -402 5768 5699 723 320 137 22 chr5 27725491 27726084 -175359448 - L2 LINE L2 -1367 1947 1287 326 196 128 0 chr5 27726252 27726354 -175359178 + L1M4 LINE L1 3055 3169 -2977 315 122 0 0 chr5 27727064 27727113 -175358419 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 202 118 0 29 chr5 27727123 27727157 -175358375 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 205 246 9 64 chr5 27729848 27729958 -175355574 + CT-rich Low_complexity Low_complexity 1 104 0 181 343 14 79 chr5 27731451 27731591 -175353941 - MIR SINE MIR -109 153 23 209 313 62 0 chr5 27732034 27732114 -175353418 - L2 LINE L2 -3 3310 3226 760 97 0 0 chr5 27732218 27732354 -175353178 + AluY SINE Alu 181 316 0 1936 187 36 51 chr5 27734293 27734763 -175350769 + MLT1C LTR MaLR 2 464 -3 193 98 49 0 chr5 27734767 27734808 -175350724 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 2561 105 14 3 chr5 27734887 27735258 -175350274 + THE1C LTR MaLR 1 375 0 2113 118 0 13 chr5 27735591 27735905 -175349627 - AluSq SINE Alu -3 310 1 1977 113 40 0 chr5 27736303 27736607 -175348925 + AluSc SINE Alu 1 293 -16 26 0 0 67 chr5 27737413 27737458 -175348074 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr5 27737707 27737728 -175347804 + AT_rich Low_complexity Low_complexity 1 21 0 390 234 83 76 chr5 27737836 27738126 -175347406 + MER69 DNA AcHobo 2228 2519 -7 2124 81 3 11 chr5 27738525 27738867 -175346665 + AluY SINE Alu 1 340 0 2593 44 0 16 chr5 27739171 27739487 -175346045 - AluY SINE Alu 0 311 1 222 116 0 0 chr5 27740455 27740498 -175345034 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1448 276 31 71 chr5 27740945 27741492 -175344040 - MLT2B3 LTR ERVL -10 544 20 22 0 0 0 chr5 27741816 27741838 -175343694 + AT_rich Low_complexity Low_complexity 1 22 0 27 62 0 0 chr5 27742447 27742495 -175343037 + AT_rich Low_complexity Low_complexity 1 48 0 485 249 45 51 chr5 27742840 27743017 -175342515 + MER82 DNA MER2_type 362 537 -116 * 703 215 17 57 chr5 27743006 27743183 -175342349 + MER82 DNA MER2_type 483 652 -1 282 160 0 0 chr5 27743217 27743267 -175342265 + (TA)n Simple_repeat Simple_repeat 1 50 0 2147 88 7 20 chr5 27744890 27745186 -175340346 + AluSx SINE Alu 1 292 -20 983 203 162 12 chr5 27745552 27745873 -175339659 + L1MB8 LINE L1 5804 6172 -6 629 222 12 18 chr5 27745952 27746123 -175339409 - LTR37B LTR ERV1 -217 251 82 2359 84 0 13 chr5 27746285 27746595 -175338937 - AluSg SINE Alu -4 306 1 1908 238 17 62 chr5 27746708 27746735 -175338797 - MLT2B1 LTR ERVL -8 512 485 356 0 23 0 chr5 27746735 27746779 -175338753 + (TG)n Simple_repeat Simple_repeat 2 46 0 1908 238 17 62 chr5 27746779 27747218 -175338314 - MLT2B1 LTR ERVL -35 485 70 2359 43 0 0 chr5 27747218 27747494 -175338038 + AluY SINE Alu 23 298 -13 1908 238 17 62 chr5 27747494 27747560 -175337972 - MLT2B1 LTR ERVL -450 70 3 374 298 48 52 chr5 27747778 27748026 -175337506 - MER31-int LTR ERV1 -876 4060 3814 4736 84 9 19 chr5 27748031 27748698 -175336834 - PABL_A LTR ERV1 0 660 1 927 282 157 11 chr5 27749010 27749461 -175336071 + LTR55 LTR ERV 20 536 -12 2356 78 0 0 chr5 27749507 27749802 -175335730 + AluY SINE Alu 1 295 -16 24 0 0 0 chr5 27750485 27750509 -175335023 + AT_rich Low_complexity Low_complexity 1 24 0 1973 152 134 11 chr5 27750938 27751319 -175334213 + MSTA LTR MaLR 1 428 0 9130 153 6 35 chr5 27751321 27752946 -175332586 + MSTA-int LTR MaLR 3 1580 0 1586 197 145 18 chr5 27752946 27753326 -175332206 + MSTA LTR MaLR 1 428 0 2215 101 3 3 chr5 27753441 27753739 -175331793 + AluY SINE Alu 1 298 -13 24 53 0 0 chr5 27753910 27753948 -175331584 + AT_rich Low_complexity Low_complexity 1 38 0 2319 81 0 3 chr5 27754048 27754344 -175331188 - AluY SINE Alu -16 295 1 25 31 0 0 chr5 27754349 27754381 -175331151 + AT_rich Low_complexity Low_complexity 1 32 0 237 65 0 0 chr5 27754975 27755006 -175330526 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 477 0 0 0 chr5 27755049 27755102 -175330430 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 273 169 0 0 chr5 27755115 27755174 -175330358 + GA-rich Low_complexity Low_complexity 2 60 0 730 240 89 36 chr5 27755283 27755642 -175329890 - LTR37B LTR ERV1 -5 463 86 24 67 0 0 chr5 27755707 27755752 -175329780 + AT_rich Low_complexity Low_complexity 1 45 0 659 311 58 48 chr5 27756046 27756394 -175329138 + L1MEc LINE L1 141 495 -5901 4498 157 36 27 chr5 27756394 27757258 -175328274 - MER4D LTR ERV1 0 872 1 659 311 58 48 chr5 27757258 27757324 -175328208 + L1MEc LINE L1 495 559 -5837 465 203 86 48 chr5 27757645 27757832 -175327700 + L1ME LINE L1 5301 5494 -672 1819 145 4 0 chr5 27759071 27759340 -175326192 + AluSx SINE Alu 33 302 -10 361 299 110 16 chr5 27759803 27760057 -175325475 + L2 LINE L2 2934 3211 -102 292 317 108 41 chr5 27760238 27760506 -175325026 - L2 LINE L2 -2954 360 75 2558 65 0 0 chr5 27760653 27760962 -175324570 + AluY SINE Alu 2 310 -1 1385 221 0 41 chr5 27761316 27761633 -175323899 - AluJo SINE Alu -7 305 2 1893 113 3 53 chr5 27762401 27762739 -175322793 - AluSx SINE Alu 0 323 1 270 211 0 0 chr5 27764138 27764190 -175321342 + LTR30 LTR ERV1 1 52 -670 1339 81 46 136 chr5 27764190 27764498 -175321034 + LTR12 LTR ERV1 57 277 -437 322 263 10 0 chr5 27764498 27764597 -175320935 + LTR30 LTR ERV1 544 643 -79 1632 128 4 0 chr5 27764597 27764831 -175320701 + LTR12 LTR ERV1 480 714 0 207 351 79 18 chr5 27764889 27765003 -175320529 - L2 LINE L2 -2503 811 691 286 329 0 7 chr5 27765266 27765418 -175320114 + L1ME LINE L1 4518 4668 -1478 545 172 43 9 chr5 27765651 27765767 -175319765 + L1MA3 LINE L1 14 133 -7432 * 12330 150 40 17 chr5 27765764 27767227 -175318305 + L1MA3 LINE L1 1099 2527 -5038 2285 88 16 3 chr5 27767227 27767533 -175317999 + AluY SINE Alu 1 310 -1 12330 150 40 17 chr5 27767533 27767720 -175317812 + L1MA3 LINE L1 2527 2708 -4857 2007 179 87 5 chr5 27767720 27768144 -175317388 - LOR1b LTR ERV1 -2 459 1 12330 150 40 17 chr5 27768144 27768663 -175316869 + L1MA3 LINE L1 2708 3318 -4247 1242 123 0 0 chr5 27768663 27768842 -175316690 - AluSg/x SINE Alu -3 309 131 183 152 0 0 chr5 27768844 27768890 -175316642 + (TA)n Simple_repeat Simple_repeat 2 47 0 966 108 0 0 chr5 27768893 27769022 -175316510 - AluY SINE Alu -182 129 1 1140 158 76 3 chr5 27769025 27769316 -175316216 + L1MA3 LINE L1 3312 3623 -3942 * 4999 142 14 42 chr5 27769312 27769403 -175316129 + L1MA3 LINE L1 6805 6897 -827 2174 89 4 4 chr5 27769403 27769720 -175315812 + AluSc SINE Alu 1 317 0 4999 142 14 42 chr5 27769720 27770572 -175314960 + L1MA3 LINE L1 6897 7724 0 325 295 93 51 chr5 27770976 27771125 -175314407 + L1ME LINE L1 5323 5487 -677 783 261 84 72 chr5 27771125 27771394 -175314138 - MLT1D LTR MaLR 0 505 226 186 43 0 0 chr5 27771394 27771417 -175314115 + (CACAT)n Simple_repeat Simple_repeat 5 27 0 783 261 84 72 chr5 27771417 27771646 -175313886 - MLT1D LTR MaLR -279 226 1 325 295 93 51 chr5 27771646 27771733 -175313799 + L1ME LINE L1 5487 5569 -595 280 127 62 49 chr5 27772026 27772105 -175313427 + L1M4 LINE L1 5767 5845 -309 670 271 14 14 chr5 27772472 27772682 -175312850 - MER58A DNA MER1_type -8 216 7 286 310 11 0 chr5 27774299 27774386 -175311146 + L2 LINE L2 3221 3308 -5 22 0 0 0 chr5 27774598 27774620 -175310912 + AT_rich Low_complexity Low_complexity 1 22 0 3886 198 39 18 chr5 27774643 27775545 -175309987 + L1MC2 LINE L1 5423 6343 -1 1398 220 0 31 chr5 27775563 27775854 -175309678 + AluJo SINE Alu 1 282 -30 495 248 169 31 chr5 27776310 27776674 -175308858 + MER57A LTR ERV1 22 403 0 1674 176 66 55 chr5 27777330 27777768 -175307764 - MER65A LTR ERV1 -2 443 1 1690 265 35 25 chr5 27777769 27777969 -175307563 - MER65A-int LTR ERV1 -1 4870 4673 2526 123 0 6 chr5 27777969 27778335 -175307197 + THE1B LTR MaLR 1 364 0 10491 115 12 27 chr5 27778335 27779934 -175305598 + THE1B-int LTR MaLR 1 1576 -4 2364 116 52 0 chr5 27779940 27780284 -175305248 + THE1B LTR MaLR 3 364 0 1690 265 35 25 chr5 27780284 27780596 -175304936 - MER65A-int LTR ERV1 -202 4669 4345 2782 255 61 57 chr5 27780694 27781295 -175304237 - MER65A-int LTR ERV1 -699 4172 3562 2437 77 0 6 chr5 27781295 27781606 -175303926 + AluY SINE Alu 1 309 -2 2782 255 61 57 chr5 27781606 27782181 -175303351 - MER65A-int LTR ERV1 -1309 3562 2991 2127 180 82 18 chr5 27782196 27782647 -175302885 - LTR1B LTR ERV1 0 826 347 1840 133 71 40 chr5 27782784 27783137 -175302395 + LTR10A LTR ERV1 185 548 -61 712 222 157 22 chr5 27783150 27783380 -175302152 - LTR1B LTR ERV1 -476 350 90 876 188 92 125 chr5 27783382 27784425 -175301107 - MER65A-int LTR ERV1 -1586 4745 2528 321 236 87 55 chr5 27784506 27784633 -175300899 - MER65A-int LTR ERV1 -2867 3731 3601 664 228 31 108 chr5 27785043 27785678 -175299854 - MER65A-int LTR ERV1 -2816 2307 1541 1691 190 91 79 chr5 27785800 27786521 -175299011 - MER65A-int LTR ERV1 -5903 1913 954 329 211 0 13 chr5 27786521 27786597 -175298935 - LTR57-int LTR ERVL -4588 755 681 4070 136 40 61 chr5 27786657 27787427 -175298105 + LTR1 LTR ERV1 32 785 0 1024 170 44 126 chr5 27787427 27787857 -175297675 - MER65A-int LTR ERV1 -3319 1552 1158 422 230 3 90 chr5 27788058 27788216 -175297316 - MER65A-int LTR ERV1 -890 896 689 465 216 11 63 chr5 27788282 27788411 -175297121 + MER54B LTR ERVL 95 195 -598 2043 207 130 56 chr5 27788411 27789178 -175296354 + LTR1B LTR ERV1 1 824 -2 465 216 11 63 chr5 27789178 27789213 -175296319 + MER54B LTR ERVL 195 230 -563 978 236 33 61 chr5 27789248 27789817 -175295715 - MER65A-int LTR ERV1 -4231 640 35 1841 183 64 21 chr5 27789854 27789981 -175295551 - MER65A LTR ERV1 -5 440 320 2038 134 6 16 chr5 27789981 27790294 -175295238 + AluSx SINE Alu 1 310 -2 1841 183 64 21 chr5 27790294 27790586 -175294946 - MER65A LTR ERV1 -125 320 3 1037 272 94 3 chr5 27790598 27790940 -175294592 + MLT1A2 LTR MaLR 1 373 -1 918 185 7 0 chr5 27790964 27791115 -175294417 + FRAM SINE Alu 14 165 -11 23 0 0 0 chr5 27791494 27791517 -175294015 + AT_rich Low_complexity Low_complexity 1 23 0 325 277 201 25 chr5 27791564 27791723 -175293809 - L1ME LINE L1 -358 5812 5626 238 188 14 58 chr5 27791831 27791900 -175293632 - L1MEc LINE L1 -4775 1621 1556 246 158 50 25 chr5 27792862 27792982 -175292550 + (TA)n Simple_repeat Simple_repeat 2 124 0 182 191 76 0 chr5 27793009 27793140 -175292392 + (TA)n Simple_repeat Simple_repeat 1 141 0 579 263 62 4 chr5 27793439 27793699 -175291833 - L1MCc LINE L1 -3748 3193 2918 8567 211 86 19 chr5 27793810 27795610 -175289922 - L1MA8 LINE L1 -279 6012 4334 2043 139 0 0 chr5 27795610 27795898 -175289634 - AluSc SINE Alu -19 290 3 8567 211 86 19 chr5 27795898 27796503 -175289029 - L1MA8 LINE L1 -1957 4334 3771 2653 99 0 0 chr5 27796503 27796858 -175288674 + THE1A LTR MaLR 1 355 0 8567 211 86 19 chr5 27796858 27797593 -175287939 - L1MA8 LINE L1 -2520 3771 3087 1466 199 0 70 chr5 27797593 27797920 -175287612 + AluJo SINE Alu 1 304 -8 201 94 0 0 chr5 27797920 27797952 -175287580 + (TA)n Simple_repeat Simple_repeat 2 33 0 8567 211 86 19 chr5 27797952 27798014 -175287518 - L1MA8 LINE L1 -3203 3088 2584 427 276 130 80 chr5 27798021 27798247 -175287285 - L1MCc LINE L1 -4258 2864 2611 2226 77 0 11 chr5 27798247 27798576 -175286956 + AluY SINE Alu 1 326 0 427 276 130 80 chr5 27798576 27798710 -175286822 - L1MCc LINE L1 -4511 2611 2485 1190 282 58 50 chr5 27798713 27799687 -175285845 - L1MCc LINE L1 -4578 2363 1272 2486 74 0 0 chr5 27799687 27799997 -175285535 - AluY SINE Alu -1 310 1 1190 282 58 50 chr5 27799997 27800124 -175285408 - L1MCc LINE L1 -5669 1272 1147 226 311 33 49 chr5 27800195 27800317 -175285215 - L1MCc LINE L1 -5433 990 871 859 256 123 102 chr5 27801593 27802082 -175283450 - MLT1E LTR MaLR -2 591 67 * 5740 144 14 37 chr5 27802070 27803113 -175282419 + Tigger1 DNA MER2_type 782 1800 -618 2794 173 19 0 chr5 27803137 27803623 -175281909 + Tigger1 DNA MER2_type 1923 2417 -1 21 57 0 0 chr5 27803624 27803659 -175281873 + AT_rich Low_complexity Low_complexity 1 35 0 2361 94 0 0 chr5 27803783 27804092 -175281440 + AluY SINE Alu 1 309 -2 23 0 10 0 chr5 27804634 27804702 -175280830 + AT_rich Low_complexity Low_complexity 1 23 0 1994 133 20 0 chr5 27804860 27805154 -175280378 + AluSx SINE Alu 5 304 -8 2385 75 0 3 chr5 27805436 27805743 -175279789 + AluY SINE Alu 6 311 0 432 0 0 0 chr5 27805747 27805795 -175279737 + (TA)n Simple_repeat Simple_repeat 2 49 0 23 54 0 0 chr5 27805866 27805903 -175279629 + AT_rich Low_complexity Low_complexity 1 37 0 3548 153 59 26 chr5 27805903 27806257 -175279275 - L1PB4 LINE L1 -3 6153 5812 288 0 0 0 chr5 27806257 27806289 -175279243 + (TA)n Simple_repeat Simple_repeat 1 32 0 3548 153 59 26 chr5 27806289 27806659 -175278873 - L1PB4 LINE L1 -344 5812 5405 2250 215 15 17 chr5 27806659 27806964 -175278568 + L1 LINE L1 3164 3469 -2677 2598 17 0 10 chr5 27806964 27807257 -175278275 + AluYa5 SINE Alu 1 290 -21 2250 215 15 17 chr5 27807257 27807546 -175277986 + L1 LINE L1 3469 3757 -2389 * 14310 27 1 0 chr5 27807544 27809243 -175276289 - L1P LINE L1 -1092 5054 3355 4281 203 15 17 chr5 27809244 27810145 -175275387 + L1 LINE L1 3753 4653 -1493 4702 96 23 25 chr5 27810145 27810833 -175274699 + LTR12 LTR ERV1 1 687 -1 4281 203 15 17 chr5 27810833 27810956 -175274576 + L1 LINE L1 4653 4775 -1371 1927 129 7 42 chr5 27811395 27811522 -175274010 + AluSx SINE Alu 11 141 -171 2340 91 0 7 chr5 27811522 27811831 -175273701 + AluY SINE Alu 3 309 -2 1927 129 7 42 chr5 27811831 27812012 -175273520 + AluSx SINE Alu 141 308 -4 647 267 88 58 chr5 27812245 27812811 -175272721 - L1M4c LINE L1 -4563 2325 1804 248 200 64 120 chr5 27812810 27812935 -175272597 - L1M4c LINE L1 -3393 3564 3447 * 1274 255 40 57 chr5 27812959 27813605 -175271927 - L1M4c LINE L1 -5104 1751 1123 335 260 36 88 chr5 27813651 27813843 -175271689 - L1M4c LINE L1 -5916 943 762 21 0 0 0 chr5 27813922 27813943 -175271589 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr5 27814188 27814221 -175271311 + AT_rich Low_complexity Low_complexity 1 33 0 2109 137 53 8 chr5 27814232 27814591 -175270941 + THE1C LTR MaLR 1 375 0 2519 34 0 0 chr5 27815019 27815342 -175270190 + L1PA4 LINE L1 5846 6168 0 1943 162 7 0 chr5 27815346 27815655 -175269877 + AluSq SINE Alu 1 311 -2 260 109 0 22 chr5 27815655 27815701 -175269831 + (GGAA)n Simple_repeat Simple_repeat 2 46 0 40 49 0 0 chr5 27815791 27815852 -175269680 + AT_rich Low_complexity Low_complexity 1 61 0 3360 171 52 27 chr5 27816638 27817786 -175267746 + pTR5 LTR ERV1 5 581 -133 1265 215 83 12 chr5 27818403 27818728 -175266804 - MER7A DNA MER2_type 0 346 1 627 359 52 20 chr5 27819284 27819788 -175265744 - HERV16 LTR ERVL -2096 2900 2381 366 354 83 43 chr5 27819918 27820339 -175265193 - HERV16 LTR ERVL -3481 2173 1736 1611 202 50 22 chr5 27822081 27822442 -175263090 - MLT1B LTR MaLR 0 390 20 1977 203 129 28 chr5 27822777 27822999 -175262533 - MER39 LTR ERV1 0 707 509 2515 66 0 0 chr5 27822999 27823301 -175262231 + AluY SINE Alu 1 302 -9 1977 203 129 28 chr5 27823301 27823678 -175261854 - MER39 LTR ERV1 -198 509 7 526 248 40 24 chr5 27823686 27823811 -175261721 + MER58B DNA MER1_type 198 324 -17 23 0 0 0 chr5 27824665 27824688 -175260844 + AT_rich Low_complexity Low_complexity 1 23 0 2177 200 7 99 chr5 27824813 27825377 -175260155 + MLT2B2 LTR ERVL 1 512 -3 2029 126 7 10 chr5 27826023 27826325 -175259207 + AluSg SINE Alu 9 309 -1 4148 188 24 20 chr5 27826338 27827380 -175258152 + L1MB1 LINE L1 5109 6160 -8 619 260 18 6 chr5 27827416 27827585 -175257947 + L1MA10 LINE L1 6156 6326 -8 23 0 0 0 chr5 27828694 27828717 -175256815 + AT_rich Low_complexity Low_complexity 1 23 0 857 191 53 5 chr5 27828768 27828957 -175256575 + MER2 DNA MER2_type 13 210 -135 26 0 0 0 chr5 27829131 27829157 -175256375 + AT_rich Low_complexity Low_complexity 1 26 0 2381 70 0 19 chr5 27829667 27829979 -175255553 - AluY SINE Alu 0 311 6 205 200 0 0 chr5 27830207 27830247 -175255285 + T-rich Low_complexity Low_complexity 1 40 0 323 267 81 0 chr5 27831020 27831106 -175254426 + L2 LINE L2 2216 2308 -1006 489 309 142 27 chr5 27831237 27831692 -175253840 - L2 LINE L2 -164 3149 2657 223 358 126 19 chr5 27831731 27831938 -175253594 + L2 LINE L2 2378 2606 -708 777 340 38 8 chr5 27832352 27832614 -175252918 + L1PA13 LINE L1 1 270 -6517 332 279 114 80 chr5 27832596 27832797 -175252735 + L1PA13 LINE L1 555 762 -6025 * 9183 263 20 24 chr5 27832805 27836404 -175249128 + L1PA13 LINE L1 1272 4859 -1938 4069 99 2 4 chr5 27836404 27836958 -175248574 + THE1B-int LTR MaLR 1016 1568 -12 1976 132 35 59 chr5 27836971 27837342 -175248190 + THE1B LTR MaLR 3 364 0 2849 156 15 35 chr5 27837342 27837869 -175247663 + L1PA15 LINE L1 5648 6165 0 21 0 0 0 chr5 27838291 27838312 -175247220 + AT_rich Low_complexity Low_complexity 1 21 0 321 221 8 16 chr5 27838332 27838454 -175247078 + (TA)n Simple_repeat Simple_repeat 1 121 0 21 36 0 0 chr5 27838830 27838858 -175246674 + AT_rich Low_complexity Low_complexity 1 28 0 260 326 87 32 chr5 27839128 27839346 -175246186 - MLT1J1 LTR MaLR 0 446 217 * 294 253 99 0 chr5 27839345 27839436 -175246096 - MLT1J2 LTR MaLR -288 162 63 31 0 0 0 chr5 27840695 27840726 -175244806 + AT_rich Low_complexity Low_complexity 1 31 0 2313 145 46 8 chr5 27840825 27841219 -175244313 - LTR57 LTR ERVL 0 411 3 2154 142 27 3 chr5 27841221 27841559 -175243973 - LTR57-int LTR ERVL 0 5343 4998 10748 151 29 4 chr5 27842211 27844459 -175241073 - LTR57-int LTR ERVL -353 4990 2626 10092 130 41 43 chr5 27844445 27844625 -175240907 - LTR57-int LTR ERVL -3512 1831 1652 * 378 0 0 0 chr5 27844625 27844667 -175240865 + (CA)n Simple_repeat Simple_repeat 1 42 0 10092 130 41 43 chr5 27844667 27845394 -175240138 - LTR57-int LTR ERVL -3691 1652 925 306 0 0 0 chr5 27845394 27845428 -175240104 + (CA)n Simple_repeat Simple_repeat 2 35 0 10092 130 41 43 chr5 27845428 27846352 -175239180 - LTR57-int LTR ERVL -4418 925 2 186 43 0 0 chr5 27846384 27846407 -175239125 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1929 168 41 27 chr5 27846407 27846602 -175238930 - LTR57 LTR ERVL -37 374 170 462 36 0 0 chr5 27846602 27846658 -175238874 + (TG)n Simple_repeat Simple_repeat 1 56 0 1929 168 41 27 chr5 27846658 27846831 -175238701 - LTR57 LTR ERVL -241 170 1 1863 162 0 0 chr5 27847785 27848087 -175237445 - AluSx SINE Alu 0 312 11 428 283 126 28 chr5 27848316 27848599 -175236933 + L1ME3A LINE L1 5465 5719 -451 2093 150 25 11 chr5 27848599 27848958 -175236574 - THE1B LTR MaLR 0 364 1 428 283 126 28 chr5 27848958 27849211 -175236321 + L1ME3A LINE L1 5719 6087 -83 213 355 159 16 chr5 27849837 27850026 -175235506 - MIR SINE MIR -11 251 36 233 204 20 0 chr5 27850029 27850078 -175235454 + CT-rich Low_complexity Low_complexity 3 52 0 28 29 0 0 chr5 27850488 27850523 -175235009 + AT_rich Low_complexity Low_complexity 1 35 0 922 237 59 37 chr5 27851591 27851912 -175233620 + L1MB4 LINE L1 2437 2764 -3382 2714 238 32 6 chr5 27851944 27852633 -175232899 + L1MB4 LINE L1 5472 6178 -2 484 298 10 47 chr5 27852729 27853016 -175232516 - MLT1H LTR MaLR -127 422 43 28 48 0 0 chr5 27853088 27853130 -175232402 + AT_rich Low_complexity Low_complexity 1 42 0 378 194 19 3 chr5 27853422 27853503 -175232029 + AluJ/FLAM SINE Alu 2 63 -239 763 224 19 0 chr5 27853509 27853670 -175231862 + FRAM SINE Alu 11 174 -2 1577 323 119 33 chr5 27854559 27855394 -175230138 + L2 LINE L2 2135 3077 -236 2241 109 0 3 chr5 27855394 27855696 -175229836 + AluSc SINE Alu 1 301 -8 1577 323 119 33 chr5 27855696 27855941 -175229591 + L2 LINE L2 3077 3299 -14 248 348 22 11 chr5 27855955 27856047 -175229485 - LTR50 LTR ERVL -277 518 426 245 234 63 81 chr5 27856221 27856332 -175229200 - LTR50 LTR ERVL -676 119 11 890 223 28 98 chr5 27856930 27857381 -175228151 - MLT1A1 LTR MaLR -2 394 1 223 252 178 56 chr5 27857787 27857894 -175227638 + MIR SINE MIR 113 232 -30 28 0 0 0 chr5 27858048 27858076 -175227456 + AT_rich Low_complexity Low_complexity 1 28 0 654 182 5 143 chr5 27858087 27858296 -175227236 - MER20 DNA MER1_type -37 182 3 272 313 39 55 chr5 27859616 27859798 -175225734 + MLT1I LTR MaLR 101 279 -130 3299 209 31 3 chr5 27860367 27861145 -175224387 - L1MA7 LINE L1 0 6291 5492 790 173 8 0 chr5 27861145 27861278 -175224254 + MSTB LTR MaLR 2 135 -291 829 167 87 66 chr5 27861303 27861454 -175224078 - L1MA7 LINE L1 -671 5497 5351 2273 91 3 3 chr5 27861454 27861762 -175223770 - AluY SINE Alu -3 308 1 829 167 87 66 chr5 27861762 27861970 -175223562 - L1MA7 LINE L1 -817 5351 5127 2849 6 0 3 chr5 27862020 27862332 -175223200 + AluY SINE Alu 1 311 0 1566 272 48 6 chr5 27863079 27863831 -175221701 - L1MEc LINE L1 -3361 2854 2116 2440 188 24 17 chr5 27863834 27864377 -175221155 - L1MA10 LINE L1 -7 6327 5781 1309 150 63 0 chr5 27864377 27864584 -175220948 + Tigger7 DNA MER2_type 2 221 -484 325 341 63 33 chr5 27864592 27865193 -175220339 - L1MEc LINE L1 -4308 2088 1470 445 231 114 78 chr5 27865215 27865530 -175220002 - LTR48 LTR ERV1 -16 771 245 836 190 178 30 chr5 27865540 27865809 -175219723 - LTR48 LTR ERV1 -478 309 1 329 264 84 7 chr5 27865810 27865965 -175219567 - L1MEc LINE L1 -4935 1461 1295 749 274 5 11 chr5 27865975 27866161 -175219371 - HERVL40 LTR ERVL -4719 811 627 1485 202 161 8 chr5 27866669 27867035 -175218497 - MSTA LTR MaLR -2 426 5 8147 169 19 48 chr5 27867045 27867861 -175217671 - MSTA-int LTR MaLR -9 1571 732 261 57 0 0 chr5 27867861 27867896 -175217636 + (TG)n Simple_repeat Simple_repeat 2 36 0 2078 104 4 7 chr5 27867896 27868176 -175217356 - AluSc SINE Alu -28 281 3 8147 169 19 48 chr5 27868176 27868975 -175216557 - MSTA-int LTR MaLR -846 734 3 1927 178 125 8 chr5 27868977 27869360 -175216172 - MSTA LTR MaLR 0 428 1 574 202 31 16 chr5 27869450 27869579 -175215953 - LTR40b LTR ERVL 0 462 332 2540 157 7 7 chr5 27869590 27870016 -175215516 + MSTA LTR MaLR 1 426 -2 2288 197 62 6 chr5 27870087 27870569 -175214963 + LTR22 LTR ERVK 1 509 0 792 292 64 8 chr5 27870570 27870820 -175214712 - LTR40b LTR ERVL -198 264 1 2103 279 45 54 chr5 27870925 27871871 -175213661 - L1MEc LINE L1 -5415 981 44 201 322 11 11 chr5 27872362 27872452 -175213080 + MIR SINE MIR 117 206 -56 339 164 0 0 chr5 27872561 27872622 -175212910 + (TG)n Simple_repeat Simple_repeat 2 62 0 27 0 0 0 chr5 27872622 27872649 -175212883 + AT_rich Low_complexity Low_complexity 1 27 0 500 294 65 45 chr5 27872656 27872993 -175212539 - MLT1L LTR MaLR -92 523 180 1461 219 67 6 chr5 27873463 27873819 -175211713 - MLT1B LTR MaLR 0 390 13 270 0 0 0 chr5 27873994 27874024 -175211508 + (TG)n Simple_repeat Simple_repeat 1 30 0 195 100 0 0 chr5 27874045 27874075 -175211457 + (TA)n Simple_repeat Simple_repeat 2 31 0 21 36 0 0 chr5 27874125 27874153 -175211379 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr5 27874715 27874743 -175210789 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr5 27876235 27876264 -175209268 + AT_rich Low_complexity Low_complexity 1 29 0 1047 108 0 0 chr5 27876904 27877052 -175208480 + L1PA11 LINE L1 6024 6171 -3 1231 214 8 0 chr5 27877196 27877430 -175208102 - AluJo SINE Alu -61 251 16 2172 102 7 13 chr5 27877490 27877795 -175207737 - AluY SINE Alu -8 303 1 307 315 24 0 chr5 27878000 27878127 -175207405 + LTR16C LTR ERVL 357 486 -5 2224 121 0 9 chr5 27878221 27878536 -175206996 + AluSx SINE Alu 1 312 0 253 390 7 0 chr5 27878901 27879037 -175206495 + HERV16 LTR ERVL 480 616 -4380 509 298 13 13 chr5 27879447 27879605 -175205927 + HERV16 LTR ERVL 1013 1170 -3826 231 36 0 0 chr5 27879621 27879649 -175205883 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 3502 145 2 19 chr5 27879719 27880285 -175205247 + MER41D LTR ERV1 1 556 -1 332 254 39 147 chr5 27880414 27880721 -175204811 + MER41D-int LTR ERV1 115 388 -7368 1289 139 0 0 chr5 27881078 27881272 -175204260 + HERV16 LTR ERVL 431 624 -4719 464 177 0 0 chr5 27881303 27881382 -175204150 + AluJ/FRAM SINE Alu 219 297 -15 2044 160 0 0 chr5 27881680 27881980 -175203552 - AluSx SINE Alu -10 302 3 363 118 10 88 chr5 27882006 27882108 -175203424 + L1 LINE L1 4316 4409 -1737 1017 148 15 64 chr5 27882114 27882316 -175203216 + Tigger2a DNA MER2_type 1 192 -242 1368 109 0 0 chr5 27882316 27882500 -175203032 - AluSg/x SINE Alu 0 312 129 1888 73 12 0 chr5 27882515 27882774 -175202758 - L1PA5 LINE L1 0 6154 5893 314 194 0 14 chr5 27882775 27882847 -175202685 + HERV16 LTR ERVL 662 732 -4611 639 217 14 0 chr5 27882852 27882990 -175202542 + MER41D-int LTR ERV1 1508 1647 -6473 1423 102 0 158 chr5 27883407 27883477 -175202055 + MER41D-int LTR ERV1 1729 1808 -6312 4059 155 4 1 chr5 27883477 27884160 -175201372 + L1PA15 LINE L1 5481 6165 0 1423 102 0 158 chr5 27884160 27884463 -175201069 + MER41D-int LTR ERV1 1808 2043 -6077 644 183 11 63 chr5 27884470 27884645 -175200887 + MER49-int LTR ERV1 3564 3729 -2869 705 180 86 36 chr5 27884678 27884900 -175200632 + MER49-int LTR ERV1 3731 3963 -2635 369 247 59 32 chr5 27884894 27885083 -175200449 + MER49-int LTR ERV1 2607 4177 -2136 * 727 168 10 117 chr5 27885273 27885470 -175200062 + MER49-int LTR ERV1 3787 3962 -4158 561 150 196 0 chr5 27885650 27885780 -175199752 + MER49-int LTR ERV1 3950 6134 -624 1181 182 24 99 chr5 27885780 27886169 -175199363 + MER49-int LTR ERV1 6379 7097 0 1150 178 24 55 chr5 27886171 27886463 -175199069 + MER49 LTR ERV1 8 290 -633 607 141 20 0 chr5 27886447 27886546 -175198986 + MER49 LTR ERV1 615 715 -208 * 1275 157 18 27 chr5 27886558 27886781 -175198751 + MER41D-int LTR ERV1 4608 4828 -1848 2151 239 11 2 chr5 27887269 27887745 -175197787 + MER41D-int LTR ERV1 6118 6597 -79 363 304 0 0 chr5 27887814 27887916 -175197616 + MER41D-int LTR ERV1 5841 5942 -4 345 88 0 128 chr5 27887916 27888018 -175197514 + MER41D LTR ERV1 1 89 -468 1775 175 27 64 chr5 27888109 27888515 -175197017 + MER41D LTR ERV1 156 546 -11 292 310 9 43 chr5 27888964 27889080 -175196452 + MERVL LTR ERVL 3318 3429 -2056 26 0 0 0 chr5 27889343 27889369 -175196163 + AT_rich Low_complexity Low_complexity 1 26 0 1830 249 19 36 chr5 27889882 27890457 -175195075 - L1MD3 LINE L1 -1 7994 7430 352 162 0 44 chr5 27890472 27890540 -175194992 - MLT1F1 LTR MaLR -452 115 51 564 223 48 37 chr5 27890549 27890737 -175194795 - L1MC3 LINE L1 -681 7087 6898 1258 257 132 16 chr5 27891062 27891756 -175193776 - L1MC3 LINE L1 -743 5386 4950 231 177 16 16 chr5 27892027 27892089 -175193443 + A-rich Low_complexity Low_complexity 4 65 0 25 0 0 0 chr5 27892094 27892119 -175193413 + AT_rich Low_complexity Low_complexity 1 25 0 4361 128 28 1 chr5 27892121 27892833 -175192699 - L1MA3 LINE L1 -8 6297 5567 259 253 67 0 chr5 27892851 27892926 -175192606 - L1MC3 LINE L1 -4879 1240 1161 410 153 15 38 chr5 27893058 27893189 -175192343 + (TA)n Simple_repeat Simple_repeat 1 128 0 254 215 0 15 chr5 27893227 27893292 -175192240 + (TA)n Simple_repeat Simple_repeat 1 64 0 239 154 46 15 chr5 27894763 27894903 -175190629 + (TA)n Simple_repeat Simple_repeat 1 144 0 369 288 23 0 chr5 27895090 27895222 -175190310 + (CATA)n Simple_repeat Simple_repeat 1 135 0 2098 178 21 0 chr5 27895807 27896189 -175189343 + MLT1B LTR MaLR 1 390 0 30 27 0 0 chr5 27896996 27897033 -175188499 + AT_rich Low_complexity Low_complexity 1 37 0 3696 213 50 22 chr5 27897744 27898495 -175187037 - L1MA7 LINE L1 -4 6989 6261 1996 117 0 38 chr5 27898495 27898811 -175186721 - AluSx SINE Alu -6 306 3 3696 213 50 22 chr5 27898811 27899521 -175186011 - L1MA7 LINE L1 -732 6261 5478 * 7062 219 97 13 chr5 27899517 27901135 -175184397 - L1MA7 LINE L1 -5085 1764 11 183 162 0 0 chr5 27902362 27902399 -175183133 + T-rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr5 27904000 27904023 -175181509 + AT_rich Low_complexity Low_complexity 1 23 0 23 86 0 0 chr5 27904128 27904186 -175181346 + AT_rich Low_complexity Low_complexity 1 58 0 29 70 0 0 chr5 27905785 27905842 -175179690 + AT_rich Low_complexity Low_complexity 1 57 0 32 0 0 0 chr5 27905957 27905989 -175179543 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr5 27906639 27906666 -175178866 + AT_rich Low_complexity Low_complexity 1 27 0 1911 122 30 3 chr5 27906805 27907109 -175178423 + AluSx SINE Alu 1 312 0 989 188 0 90 chr5 27907568 27907791 -175177741 - MLT1B LTR MaLR 0 390 188 253 143 0 0 chr5 27907797 27907839 -175177693 - MLT1B LTR MaLR -348 42 1 497 324 61 44 chr5 27907932 27908275 -175177257 + MLT1J LTR MaLR 18 366 -145 1780 175 43 6 chr5 27908329 27908654 -175176878 + MER2 DNA MER2_type 3 339 -6 246 284 14 0 chr5 27908661 27908735 -175176797 + MLT1J LTR MaLR 437 511 0 981 169 13 0 chr5 27908870 27909024 -175176508 - MER70A LTR ERVL -313 159 4 356 272 89 16 chr5 27909027 27909218 -175176314 - L1M4 LINE L1 -1585 4561 4357 2146 198 74 2 chr5 27910130 27910574 -175174958 + MER31A LTR ERV1 1 476 -9 405 318 123 45 chr5 27910627 27911008 -175174524 - HAL1b LINE L1 -500 848 438 22 56 0 0 chr5 27911245 27911281 -175174251 + AT_rich Low_complexity Low_complexity 1 36 0 1305 157 30 30 chr5 27911321 27911583 -175173949 + THE1A LTR MaLR 1 262 -93 9765 106 4 0 chr5 27911583 27912937 -175172595 + THE1B-int LTR MaLR 222 1580 0 1876 141 36 28 chr5 27912937 27913298 -175172234 + THE1B LTR MaLR 1 364 0 466 341 68 38 chr5 27913688 27914057 -175171475 - HAL1 LINE L1 -1348 1159 780 624 213 24 0 chr5 27914748 27914875 -175170657 + MLT1D LTR MaLR 369 498 -7 180 97 0 0 chr5 27915392 27915423 -175170109 + (CA)n Simple_repeat Simple_repeat 2 32 0 1571 274 133 55 chr5 27916922 27917099 -175168433 - L1MD1 LINE L1 -28 6214 6052 1790 150 150 5 chr5 27917099 27917473 -175168059 - MSTA LTR MaLR 0 428 1 1571 274 133 55 chr5 27917473 27917619 -175167913 - L1MD1 LINE L1 -190 6052 5919 2215 78 0 7 chr5 27917619 27917933 -175167599 + AluY SINE Alu 1 312 0 1571 274 133 55 chr5 27917933 27919611 -175165921 - L1MD1 LINE L1 -323 5919 3877 2199 115 0 0 chr5 27919611 27919916 -175165616 - AluSg SINE Alu -5 305 1 1571 274 133 55 chr5 27919916 27920267 -175165265 - L1MD1 LINE L1 -2365 3877 3555 368 248 29 29 chr5 27920267 27920395 -175165137 + MER45A DNA AcHobo 30 156 -22 23 0 0 0 chr5 27920729 27920752 -175164780 + AT_rich Low_complexity Low_complexity 1 23 0 183 302 129 17 chr5 27921892 27922008 -175163524 - MIR SINE MIR 0 262 134 22 56 0 0 chr5 27922026 27922062 -175163470 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr5 27922444 27922470 -175163062 + AT_rich Low_complexity Low_complexity 1 26 0 1788 176 0 13 chr5 27923574 27923880 -175161652 + AluSx SINE Alu 1 302 -10 26 0 0 0 chr5 27923939 27923965 -175161567 + AT_rich Low_complexity Low_complexity 1 26 0 3684 234 78 18 chr5 27924345 27925888 -175159644 + L1MA10 LINE L1 4433 6111 -223 1286 213 49 24 chr5 27925888 27926216 -175159316 - MER1B DNA MER1_type -1 336 1 3684 234 78 18 chr5 27926216 27926421 -175159111 + L1MA10 LINE L1 6111 6302 -32 39 60 0 0 chr5 27929635 27929702 -175155830 + AT_rich Low_complexity Low_complexity 1 67 0 22 35 0 0 chr5 27929796 27929825 -175155707 + AT_rich Low_complexity Low_complexity 1 29 0 2011 134 0 10 chr5 27931281 27931580 -175153952 + AluSq SINE Alu 1 296 -17 307 366 17 47 chr5 27931648 27931734 -175153798 + MER5B DNA MER1_type 9 89 -89 180 0 0 0 chr5 27931734 27931754 -175153778 + (TTAAA)n Simple_repeat Simple_repeat 2 21 0 307 366 17 47 chr5 27931754 27931839 -175153693 + MER5B DNA MER1_type 89 175 -3 3727 289 69 27 chr5 27931849 27933464 -175152068 + L1MB8 LINE L1 11 1697 -5158 609 290 48 55 chr5 27933472 27933906 -175151626 + L1MB8 LINE L1 1979 2409 -4550 6172 271 55 20 chr5 27934134 27936946 -175148586 + L1MB8 LINE L1 2622 5483 -1474 1403 198 26 51 chr5 27936952 27937419 -175148113 + L1MB8 LINE L1 5752 6209 -767 311 145 35 208 chr5 27937714 27937868 -175147664 + LTR45 LTR ERV1 350 518 -7 1642 219 22 124 chr5 27937882 27938273 -175147259 + L1MB8 LINE L1 6187 6616 -373 646 140 9 19 chr5 27938273 27938380 -175147152 + U6 snRNA snRNA 2 107 0 946 106 88 0 chr5 27938380 27938540 -175146992 + L1MA2 LINE L1 6122 6295 -9 1642 219 22 124 chr5 27938540 27939042 -175146490 + L1MB8 LINE L1 6614 6989 0 222 214 0 0 chr5 27939478 27939534 -175145998 + (TA)n Simple_repeat Simple_repeat 2 57 0 29 104 0 0 chr5 27942009 27942115 -175143417 + AT_rich Low_complexity Low_complexity 1 106 0 285 186 106 53 chr5 27942419 27942532 -175143000 - MIR SINE MIR -108 154 36 375 210 85 45 chr5 27943019 27943195 -175142337 - L1MC5 LINE L1 -306 7655 7473 512 309 78 64 chr5 27943960 27944461 -175141071 + L1MEd LINE L1 747 1254 -4865 291 113 0 0 chr5 27944476 27944529 -175141003 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 253 241 0 0 chr5 27944577 27944631 -175140901 - MLT1H LTR MaLR -1 466 413 766 309 125 22 chr5 27944822 27945230 -175140302 - LTR16A LTR ERVL 0 450 1 331 305 48 62 chr5 27945431 27945802 -175139730 + L1MC/D LINE L1 5296 5661 -2147 227 271 129 29 chr5 27945834 27945974 -175139558 + L1MC/D LINE L1 5728 5881 -1927 22 56 0 0 chr5 27946198 27946234 -175139298 + AT_rich Low_complexity Low_complexity 1 36 0 1345 261 105 48 chr5 27946319 27946467 -175139065 + MLT1E LTR MaLR 42 180 -413 2093 139 0 0 chr5 27946467 27946770 -175138762 - AluSx SINE Alu -9 303 1 1345 261 105 48 chr5 27946770 27947143 -175138389 + MLT1E LTR MaLR 180 593 0 21 36 0 0 chr5 27947226 27947254 -175138278 + AT_rich Low_complexity Low_complexity 1 28 0 527 294 44 6 chr5 27947405 27947565 -175137967 + MER5A DNA MER1_type 2 167 -22 293 318 11 0 chr5 27947635 27947723 -175137809 - MLT1H LTR MaLR -163 392 304 340 240 8 132 chr5 27947852 27947973 -175137559 - MLT1H LTR MaLR -377 172 35 307 341 84 0 chr5 27948025 27948192 -175137340 - MLT1I LTR MaLR -224 185 5 22 70 0 0 chr5 27948815 27948858 -175136674 + AT_rich Low_complexity Low_complexity 1 43 0 2089 113 3 0 chr5 27949455 27949747 -175135785 - AluSg SINE Alu -16 294 2 238 314 12 24 chr5 27949888 27950057 -175135475 + (TA)n Simple_repeat Simple_repeat 2 168 0 2037 144 36 28 chr5 27950174 27950534 -175134998 + THE1B LTR MaLR 2 364 0 29 0 0 0 chr5 27950804 27950833 -175134699 + AT_rich Low_complexity Low_complexity 1 29 0 368 318 0 0 chr5 27951585 27951702 -175133830 - MLT2E LTR ERVL -4 624 532 336 274 47 22 chr5 27951804 27951950 -175133582 - MLT2F LTR ERVL -469 159 10 22 0 0 0 chr5 27952969 27952991 -175132541 + AT_rich Low_complexity Low_complexity 1 22 0 315 385 17 0 chr5 27953202 27953319 -175132213 - LTR16A LTR ERVL -114 336 218 423 348 39 29 chr5 27953334 27953541 -175131991 - LTR16A LTR ERVL -114 336 128 1239 251 14 38 chr5 27953657 27954028 -175131504 + MLT1A2 LTR MaLR 12 373 -1 1134 264 19 42 chr5 27954622 27955049 -175130483 + MER63C DNA MER1_type 2 418 -512 1143 204 7 3 chr5 27955049 27955312 -175130220 + MLT2D LTR ERVL 1 337 -60 294 95 0 0 chr5 27955330 27955372 -175130160 + (CA)n Simple_repeat Simple_repeat 1 42 0 1023 178 171 41 chr5 27955401 27955670 -175129862 + MER7A DNA MER2_type 44 345 -1 387 0 0 0 chr5 27955671 27955714 -175129818 + (TG)n Simple_repeat Simple_repeat 2 44 0 754 264 74 0 chr5 27955744 27955960 -175129572 + MER63C DNA MER1_type 418 649 -281 857 246 21 32 chr5 27955973 27956257 -175129275 - MER63C DNA MER1_type -568 362 82 907 246 42 0 chr5 27956263 27956523 -175129009 + MER63C DNA MER1_type 651 921 -9 211 281 0 0 chr5 27956650 27956707 -175128825 + GA-rich Low_complexity Low_complexity 4 60 0 22 35 0 0 chr5 27957245 27957274 -175128258 + AT_rich Low_complexity Low_complexity 1 29 0 214 130 19 19 chr5 27957995 27958049 -175127483 + (TA)n Simple_repeat Simple_repeat 2 55 0 23 0 0 0 chr5 27958711 27958734 -175126798 + AT_rich Low_complexity Low_complexity 1 23 0 309 281 36 66 chr5 27959078 27959274 -175126258 - HAL1 LINE L1 -33 2474 2285 26 64 0 0 chr5 27959291 27959338 -175126194 + AT_rich Low_complexity Low_complexity 1 47 0 2205 134 33 19 chr5 27960336 27960695 -175124837 - THE1B LTR MaLR 0 364 1 323 296 92 34 chr5 27961032 27961238 -175124294 - HAL1 LINE L1 -1487 1020 803 22 0 0 0 chr5 27961715 27961737 -175123795 + AT_rich Low_complexity Low_complexity 1 22 0 490 233 62 40 chr5 27962582 27962758 -175122774 + MER63A DNA MER1_type 3 182 -28 545 100 18 18 chr5 27963456 27963566 -175121966 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 1425 156 22 43 chr5 27964078 27964354 -175121178 + THE1C LTR MaLR 1 270 -105 1758 161 67 28 chr5 27966375 27966736 -175118796 + THE1C LTR MaLR 1 375 0 262 260 80 30 chr5 27968920 27969020 -175116512 - L2 LINE L2 0 3313 3209 1960 182 91 94 chr5 27969179 27969237 -175116295 - MLT2B3 LTR ERVL 0 554 497 473 58 14 0 chr5 27969237 27969306 -175116226 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 1960 182 91 94 chr5 27969306 27969797 -175115735 - MLT2B3 LTR ERVL -57 497 7 1257 209 73 42 chr5 27969798 27969831 -175115701 - MER58B DNA MER1_type -2080 340 309 1577 238 8 8 chr5 27969831 27970196 -175115336 - MLT1A1 LTR MaLR 0 365 1 1257 209 73 42 chr5 27970196 27970492 -175115040 - MER58B DNA MER1_type -2111 309 1 255 297 25 59 chr5 27970660 27970778 -175114754 - L2 LINE L2 0 3313 3200 2011 89 0 73 chr5 27971098 27971414 -175114118 - AluSx SINE Alu -3 309 17 1265 261 32 37 chr5 27971695 27972101 -175113431 + MER67D-int LTR ERV1 398 801 -4135 610 274 74 23 chr5 27972120 27972335 -175113197 + MER67D-int LTR ERV1 4600 4825 -111 920 181 31 84 chr5 27972430 27972656 -175112876 + MER67D LTR ERV1 1 214 -300 229 285 72 25 chr5 27973504 27973781 -175111751 + L1ME1 LINE L1 1230 1522 -4901 383 326 57 65 chr5 27973876 27974159 -175111373 + L1ME1 LINE L1 1829 2110 -5012 1930 121 10 10 chr5 27974159 27974464 -175111068 + AluY SINE Alu 1 305 -6 383 326 57 65 chr5 27974464 27974551 -175110981 + L1ME1 LINE L1 2110 2196 -4926 245 250 73 10 chr5 27974558 27974654 -175110878 + L1ME1 LINE L1 2057 2158 -4785 282 222 265 8 chr5 27974702 27974819 -175110713 + LTR50 LTR ERVL 21 167 -628 251 258 46 62 chr5 27975393 27975553 -175109979 + L1ME1 LINE L1 2159 2468 -4631 1222 106 0 0 chr5 27976183 27976353 -175109179 - AluY SINE Alu -7 304 135 22 35 0 0 chr5 27976429 27976458 -175109074 + AT_rich Low_complexity Low_complexity 1 29 0 332 271 50 55 chr5 27976467 27976666 -175108866 - L1M4 LINE L1 -2278 3868 3671 26 50 0 0 chr5 27976775 27976815 -175108717 + AT_rich Low_complexity Low_complexity 1 40 0 219 36 0 0 chr5 27977027 27977055 -175108477 + (TG)n Simple_repeat Simple_repeat 2 29 0 219 69 0 0 chr5 27977054 27977083 -175108449 + (TA)n Simple_repeat Simple_repeat 1 29 0 2038 251 42 20 chr5 27977395 27977985 -175107547 + LTR26 LTR ERV1 1 603 0 23 33 0 0 chr5 27979225 27979255 -175106277 + AT_rich Low_complexity Low_complexity 1 30 0 269 330 110 0 chr5 27980485 27980603 -175104929 - MLT1J1 LTR MaLR -315 131 1 360 296 89 19 chr5 27980603 27980860 -175104672 + L1ME1 LINE L1 3804 4078 -2863 23 0 0 0 chr5 27981074 27981097 -175104435 + AT_rich Low_complexity Low_complexity 1 23 0 270 325 16 0 chr5 27981949 27982072 -175103460 - LTR33 LTR ERVL -70 451 327 1328 230 25 22 chr5 27982478 27982835 -175102697 + L1ME1 LINE L1 5560 5917 -1024 * 4343 152 25 11 chr5 27982826 27983610 -175101922 + L1MA8 LINE L1 5429 6223 -68 230 195 0 0 chr5 27983629 27983670 -175101862 + Tigger5 DNA MER2_type 21 61 -2262 * 1152 134 27 0 chr5 27983669 27983856 -175101676 + Tigger5 DNA MER2_type 2062 2253 -70 1352 177 53 42 chr5 27983871 27984154 -175101378 - AluSx SINE Alu -26 286 1 24 32 0 0 chr5 27984175 27984206 -175101326 + AT_rich Low_complexity Low_complexity 1 31 0 860 212 16 36 chr5 27984364 27984730 -175100802 + L1ME1 LINE L1 5930 6293 -668 34539 85 62 2 chr5 27984745 27990524 -175095008 + L1PA6 LINE L1 11 6148 -6 1026 266 56 0 chr5 27990523 27990827 -175094705 + L1ME1 LINE L1 6300 6620 -341 * 1073 99 0 41 chr5 27990830 27991001 -175094531 + AluY SINE Alu 139 302 -9 471 293 108 5 chr5 27991020 27991232 -175094300 + L1ME1 LINE L1 6636 6869 -92 438 333 27 5 chr5 27991242 27991428 -175094104 + MLT1J LTR MaLR 6 195 -316 259 312 189 33 chr5 27991858 27992191 -175093341 + L2 LINE L2 2921 3305 -8 183 290 58 14 chr5 27992314 27992383 -175093149 - L2 LINE L2 -90 3223 3152 849 321 118 51 chr5 27992600 27993370 -175092162 - L2 LINE L2 -402 2912 2091 580 373 24 4 chr5 27994278 27994533 -175090999 + L2 LINE L2 569 828 -2486 376 201 63 8 chr5 27995010 27995150 -175090382 + L1MB8 LINE L1 6018 6176 -2 225 315 0 0 chr5 27995150 27995280 -175090252 + (TATATG)n Simple_repeat Simple_repeat 5 134 0 2145 73 0 4 chr5 27995532 27995805 -175089727 - AluY SINE Alu -39 272 1 275 284 62 0 chr5 27996236 27996317 -175089215 + MER69 DNA AcHobo 8 93 -2433 553 242 148 35 chr5 27996323 27996810 -175088722 + MER69 DNA AcHobo 1950 2491 -35 2357 118 3 0 chr5 27996861 27997210 -175088322 - L1PA14 LINE L1 0 6161 5812 21 0 0 0 chr5 27997711 27997732 -175087800 + AT_rich Low_complexity Low_complexity 1 21 0 1837 137 48 3 chr5 27997919 27998211 -175087321 - AluSx SINE Alu -7 305 1 21 57 0 0 chr5 27998564 27998599 -175086933 + AT_rich Low_complexity Low_complexity 1 35 0 234 192 0 0 chr5 27999241 27999293 -175086239 + GA-rich Low_complexity Low_complexity 2 53 0 3079 17 0 0 chr5 27999501 27999857 -175085675 + L1PA2 LINE L1 5798 6153 -2 25 99 0 0 chr5 28000764 28000845 -175084687 + AT_rich Low_complexity Low_complexity 1 81 0 24 0 0 0 chr5 28001659 28001683 -175083849 + AT_rich Low_complexity Low_complexity 1 24 0 1356 196 7 22 chr5 28001990 28002261 -175083271 - AluJb SINE Alu -45 267 1 285 232 61 0 chr5 28002291 28002373 -175083159 - L1MCa LINE L1 -4818 1608 1522 777 310 61 3 chr5 28002663 28002989 -175082543 - L2 LINE L2 -1130 2184 1840 2649 197 9 4 chr5 28002990 28003523 -175082009 + L1PA15 LINE L1 4470 5005 -1141 3732 163 12 40 chr5 28003628 28004427 -175081105 + L1PA15 LINE L1 5382 6158 -7 1358 205 7 34 chr5 28004680 28004978 -175080554 + AluJo SINE Alu 1 290 -22 26 0 0 0 chr5 28005428 28005454 -175080078 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr5 28005499 28005519 -175080013 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 5512 82 48 0 chr5 28005519 28006297 -175079235 - L1PA8 LINE L1 -24 6148 5334 940 106 81 6 chr5 28006450 28006611 -175078921 - L1MA2 LINE L1 -10 6294 6122 647 140 9 19 chr5 28006611 28006718 -175078814 - U6 snRNA snRNA 0 107 2 26994 155 22 77 chr5 28006719 28008909 -175076623 - L1PA8A LINE L1 -396 5736 3429 2137 20 8 0 chr5 28008909 28009159 -175076373 + L1PA4 LINE L1 5901 6153 -2 26994 155 22 77 chr5 28009159 28010602 -175074930 - L1PA8A LINE L1 -2703 3429 1909 1862 140 20 3 chr5 28010602 28010894 -175074638 - AluSg SINE Alu -13 297 1 26994 155 22 77 chr5 28010894 28013321 -175072211 - L1PA8A LINE L1 -4223 1909 10 1029 266 9 4 chr5 28013670 28013903 -175071629 + Tigger5 DNA MER2_type 1 234 -2089 * 2459 163 20 60 chr5 28013887 28013958 -175071574 + Tigger5 DNA MER2_type 1835 1907 -416 2214 107 3 10 chr5 28013958 28014258 -175071274 - AluSx SINE Alu -14 298 1 2459 163 20 60 chr5 28014258 28014321 -175071211 + Tigger5 DNA MER2_type 1907 1971 -352 2177 155 28 0 chr5 28014321 28014675 -175070857 - THE1B LTR MaLR 0 364 1 2459 163 20 60 chr5 28014675 28015043 -175070489 + Tigger5 DNA MER2_type 1971 2318 -5 3818 209 7 62 chr5 28015248 28016280 -175069252 - L1P LINE L1 -2315 3831 2857 4602 162 60 10 chr5 28016307 28017452 -175068080 + L1PA15 LINE L1 4975 6165 0 22 35 0 0 chr5 28018506 28018535 -175066997 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr5 28018764 28018801 -175066731 + AT_rich Low_complexity Low_complexity 1 37 0 307 337 79 14 chr5 28019098 28019377 -175066155 - L1M4 LINE L1 -3702 2444 2148 270 0 0 0 chr5 28019782 28019812 -175065720 + (TG)n Simple_repeat Simple_repeat 2 31 0 1971 115 0 0 chr5 28019812 28020073 -175065459 - AluSx SINE Alu -50 262 2 242 290 0 19 chr5 28021101 28021208 -175064324 - HAL1 LINE L1 -111 2396 2292 675 47 0 85 chr5 28021429 28021558 -175063974 - AluY SINE Alu 0 306 187 888 311 104 56 chr5 28021991 28022862 -175062670 - HAL1 LINE L1 -714 1793 881 3477 181 16 34 chr5 28023990 28024687 -175060845 + L1M4c LINE L1 6 689 -5695 905 130 13 0 chr5 28024681 28024835 -175060697 + L1M4c LINE L1 1678 1833 -4551 * 259 132 88 0 chr5 28024837 28024894 -175060638 + AluY SINE Alu 1 46 -253 2084 199 33 28 chr5 28024904 28025477 -175060055 + pTR5 LTR ERV1 769 1344 -1094 4272 115 108 42 chr5 28025493 28026264 -175059268 + LTR12 LTR ERV1 5 826 0 2065 66 0 26 chr5 28026264 28026536 -175058996 + AluY SINE Alu 31 295 -16 443 320 44 34 chr5 28027352 28027558 -175057974 - MIR SINE MIR -44 218 11 1011 268 29 29 chr5 28028183 28028741 -175056791 - L1M4 LINE L1 -3668 2976 2469 707 199 52 36 chr5 28029177 28029389 -175056143 + MER61D LTR ERV1 340 790 -4 3366 264 42 53 chr5 28029406 28031023 -175054509 + MER61D-int LTR ERV1 39 1604 -6015 1335 181 13 0 chr5 28031056 28031293 -175054239 + MER61D-int LTR ERV1 2168 2407 -4684 4224 254 26 5 chr5 28031329 28032226 -175053306 + MER61D-int LTR ERV1 2505 3420 -3671 1011 221 108 0 chr5 28032606 28032837 -175052695 + MER52-int LTR ERV1 6537 6792 -299 2462 146 11 3 chr5 28033795 28034165 -175051367 + THE1C-int LTR MaLR 902 1274 -306 1044 65 18 24 chr5 28034147 28034316 -175051216 + THE1C-int LTR MaLR 1407 1574 -6 * 1278 123 5 30 chr5 28034320 28034523 -175051009 + THE1C LTR MaLR 1 198 -177 715 223 46 7 chr5 28034525 28034744 -175050788 + MER61D LTR ERV1 274 425 0 1263 277 80 48 chr5 28034942 28035385 -175050147 - L1M4 LINE L1 -4562 2084 1657 2582 124 0 11 chr5 28035385 28035764 -175049768 + THE1C LTR MaLR 1 375 0 1263 277 80 48 chr5 28035764 28036488 -175049044 - L1M4 LINE L1 -4989 1657 882 415 318 91 56 chr5 28036587 28036721 -175048811 - L1M4 LINE L1 -5660 882 754 213 39 0 0 chr5 28036721 28036747 -175048785 + (TTA)n Simple_repeat Simple_repeat 3 28 0 415 318 91 56 chr5 28036747 28037427 -175048105 - L1M4 LINE L1 -5788 754 40 353 272 149 34 chr5 28038567 28038802 -175046730 + LTR41 LTR ERVL 2 263 -510 490 321 28 9 chr5 28039876 28040091 -175045441 + ERVL LTR ERVL 471 689 -5075 512 340 84 61 chr5 28040311 28040897 -175044635 + ERVL LTR ERVL 1374 1972 -3792 2268 117 0 0 chr5 28040897 28041205 -175044327 + AluSg SINE Alu 3 310 0 2087 110 20 0 chr5 28041976 28042268 -175043264 + AluSp SINE Alu 1 298 -15 1654 132 60 87 chr5 28042564 28042944 -175042588 + THE1C LTR MaLR 1 370 -5 232 26 0 51 chr5 28043119 28043158 -175042374 + (TA)n Simple_repeat Simple_repeat 1 37 0 1762 140 29 42 chr5 28043234 28043612 -175041920 + THE1C LTR MaLR 3 375 0 775 210 6 6 chr5 28046020 28046177 -175039355 + Tigger1 DNA MER2_type 1 157 -2261 * 927 142 186 0 chr5 28046166 28046349 -175039183 + Tigger1 DNA MER2_type 2202 2418 0 1434 191 34 24 chr5 28046656 28046950 -175038582 + AluJo SINE Alu 1 297 -15 682 189 8 0 chr5 28047625 28047757 -175037775 - FLAM_C SINE Alu 0 133 1 440 213 44 52 chr5 28047804 28047940 -175037592 + L1MB5 LINE L1 6037 6171 -3 871 234 109 7 chr5 28048365 28048668 -175036864 - MER33 DNA MER1_type -1 323 1 356 291 57 32 chr5 28050298 28050456 -175035076 - MIR SINE MIR 0 262 101 994 284 68 65 chr5 28050899 28052051 -175033481 - L1M4 LINE L1 -2531 3615 2461 339 335 69 28 chr5 28052052 28052270 -175033262 + L1ME3A LINE L1 4984 5210 -936 1584 280 69 48 chr5 28052318 28053187 -175032345 + L1ME3A LINE L1 5283 6169 -1 1149 283 36 3 chr5 28053357 28053718 -175031814 + L1PB2 LINE L1 6 378 -6485 * 6176 239 10 14 chr5 28053708 28055497 -175030035 + L1PB2 LINE L1 2633 4414 -2448 5937 182 14 18 chr5 28055498 28057802 -175027730 + L1PB2 LINE L1 4574 6867 0 809 228 115 59 chr5 28058337 28058710 -175026822 + MSTD LTR MaLR 1 394 -2 270 339 48 0 chr5 28058755 28058879 -175026653 + MIR3 SINE MIR 40 169 -39 1700 201 12 58 chr5 28059501 28059804 -175025728 + MLT2D LTR ERVL 1 280 -134 1993 125 0 10 chr5 28059804 28060101 -175025431 - AluSg SINE Alu -8 302 9 1700 201 12 58 chr5 28060101 28060229 -175025303 + MLT2D LTR ERVL 280 412 -2 260 284 0 0 chr5 28060876 28060943 -175024589 + CT-rich Low_complexity Low_complexity 2 68 0 21 36 0 0 chr5 28060949 28060977 -175024555 + AT_rich Low_complexity Low_complexity 1 28 0 783 196 0 8 chr5 28060986 28061119 -175024413 - FAM SINE Alu -34 151 20 25 31 0 0 chr5 28061190 28061222 -175024310 + AT_rich Low_complexity Low_complexity 1 32 0 228 286 13 0 chr5 28061295 28061372 -175024160 - L1ME LINE L1 -578 5588 5511 2193 120 0 22 chr5 28061425 28061742 -175023790 - AluSg SINE Alu 0 310 1 2120 94 14 0 chr5 28061861 28062148 -175023384 - AluSc SINE Alu -18 291 1 26 0 0 0 chr5 28062236 28062262 -175023270 + AT_rich Low_complexity Low_complexity 1 26 0 506 311 120 78 chr5 28062279 28063034 -175022498 - L2 LINE L2 -73 3240 2518 695 209 0 0 chr5 28063034 28063163 -175022369 + FLAM_A SINE Alu 1 129 -4 506 311 120 78 chr5 28063163 28063179 -175022353 - L2 LINE L2 -795 2518 2504 1020 79 0 48 chr5 28063179 28063368 -175022164 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 506 311 120 78 chr5 28063368 28063550 -175021982 - L2 LINE L2 -809 2504 1128 5181 89 27 7 chr5 28063912 28064663 -175020869 - MER4E LTR ERV1 0 766 1 7557 143 44 16 chr5 28065512 28067499 -175018033 - MER4E-int LTR ERV1 -113 6645 4452 3507 134 36 67 chr5 28067498 28068169 -175017363 - MER4E-int LTR ERV1 -2670 4088 3439 * 5252 141 54 31 chr5 28068169 28069279 -175016253 - MER4E-int LTR ERV1 -3663 3095 1961 3826 137 37 3 chr5 28069282 28069881 -175015651 - LTR9B LTR ERV1 0 644 26 1358 118 68 18 chr5 28069892 28070079 -175015453 - MER4E-int LTR ERV1 -4794 1964 1757 1747 65 12 29 chr5 28070079 28070325 -175015207 + AluY SINE Alu 63 304 -7 1358 118 68 18 chr5 28070325 28070417 -175015115 - MER4E-int LTR ERV1 -5001 1757 1671 376 222 4 38 chr5 28070844 28070993 -175014539 + pTR5 LTR ERV1 37 685 -95 2814 150 107 29 chr5 28071022 28071683 -175013849 - MER4E-int LTR ERV1 -3363 1652 940 1498 122 262 9 chr5 28071694 28072030 -175013502 - MER4E-int LTR ERV1 -5586 1172 752 1926 132 7 7 chr5 28072030 28072326 -175013206 - MER4E-int LTR ERV1 -6462 296 1 4920 99 27 4 chr5 28072330 28073075 -175012457 - MER4E LTR ERV1 -4 762 1 1936 160 0 0 chr5 28073299 28073587 -175011945 - AluSx SINE Alu -22 290 3 203 162 0 0 chr5 28073633 28073670 -175011862 + T-rich Low_complexity Low_complexity 4 40 0 2034 112 0 0 chr5 28074264 28074542 -175010990 + AluSq SINE Alu 36 313 0 185 409 131 10 chr5 28074560 28074873 -175010659 - L2 LINE L2 -380 2934 2584 1609 178 169 16 chr5 28075330 28075699 -175009833 + MSTA LTR MaLR 4 428 0 8954 156 9 37 chr5 28075701 28077325 -175008207 + MSTA-int LTR MaLR 3 1580 0 1331 201 177 14 chr5 28077325 28077693 -175007839 + MSTA LTR MaLR 1 428 0 396 280 70 13 chr5 28077693 28077850 -175007682 + MIR SINE MIR 95 260 -2 24 53 0 0 chr5 28078262 28078300 -175007232 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr5 28079684 28079705 -175005827 + AT_rich Low_complexity Low_complexity 1 21 0 1464 185 10 27 chr5 28079742 28080040 -175005492 + AluJb SINE Alu 1 293 -19 26 74 0 0 chr5 28080320 28080374 -175005158 + AT_rich Low_complexity Low_complexity 1 54 0 2380 80 0 0 chr5 28080490 28080791 -175004741 - AluSq SINE Alu -11 302 2 326 198 31 52 chr5 28081356 28081452 -175004080 - MER105 DNA DNA -5 199 106 2014 132 0 4 chr5 28083338 28083618 -175001914 + AluSx SINE Alu 1 279 -33 217 260 60 40 chr5 28083796 28083896 -175001636 + MIR SINE MIR 74 175 -87 22 0 0 0 chr5 28083969 28083991 -175001541 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr5 28084272 28084301 -175001231 + AT_rich Low_complexity Low_complexity 1 29 0 182 305 17 17 chr5 28085317 28085376 -175000156 - MER5A DNA MER1_type -1 188 130 30 27 0 0 chr5 28085526 28085563 -174999969 + AT_rich Low_complexity Low_complexity 1 37 0 1728 224 15 27 chr5 28085595 28086001 -174999531 + MSTB2 LTR MaLR 4 404 -53 1478 241 88 8 chr5 28087190 28087658 -174997874 + MLT1D LTR MaLR 1 505 0 502 333 128 10 chr5 28088319 28088616 -174996916 - LTR16B LTR ERVL -125 339 8 182 88 0 29 chr5 28088755 28088789 -174996743 + (TA)n Simple_repeat Simple_repeat 2 34 0 370 289 36 6 chr5 28088878 28089044 -174996488 + L1MEc LINE L1 175 345 -6218 870 231 11 16 chr5 28089081 28089267 -174996265 + L1MEc LINE L1 442 626 -5758 416 121 30 0 chr5 28089276 28089342 -174996190 + MADE1 DNA Mariner 13 80 0 4684 261 66 34 chr5 28089347 28089706 -174995826 + L1MB3 LINE L1 2118 2464 -3955 331 113 0 16 chr5 28089706 28089768 -174995764 + L1PA11 LINE L1 6113 6173 -1 4684 261 66 34 chr5 28089768 28093573 -174991959 + L1MB3 LINE L1 2464 6417 -2 24 32 0 0 chr5 28093589 28093620 -174991912 + AT_rich Low_complexity Low_complexity 1 31 0 4186 167 15 1 chr5 28093626 28094364 -174991168 + L1PA16 LINE L1 5415 6162 -4 235 286 19 9 chr5 28094366 28094471 -174991061 + L1MEc LINE L1 1185 1290 -5273 22 0 0 0 chr5 28094521 28094543 -174990989 + AT_rich Low_complexity Low_complexity 1 22 0 261 316 40 67 chr5 28094543 28094768 -174990764 + L1MDa LINE L1 119 337 -6307 854 230 108 26 chr5 28095282 28095762 -174989770 + L1MDa LINE L1 1255 1785 -4859 1676 275 90 26 chr5 28095776 28096978 -174988554 + L1MDa LINE L1 1839 3129 -3515 215 211 18 18 chr5 28097048 28097105 -174988427 + (TA)n Simple_repeat Simple_repeat 1 57 0 287 289 26 0 chr5 28097127 28097203 -174988329 + L1MDa LINE L1 3174 3251 -3393 490 303 97 70 chr5 28097214 28097352 -174988180 + L1MDa LINE L1 8 141 -6401 381 56 19 0 chr5 28097352 28097406 -174988126 + L1PA7 LINE L1 6097 6151 -3 490 303 97 70 chr5 28097406 28097951 -174987581 + L1MDa LINE L1 141 709 -5833 21 0 0 0 chr5 28097970 28097991 -174987541 + AT_rich Low_complexity Low_complexity 1 21 0 1598 231 69 9 chr5 28100150 28100570 -174984962 - MLT1C LTR MaLR -6 461 17 21 0 0 0 chr5 28100699 28100720 -174984812 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr5 28101162 28101182 -174984350 + (TAA)n Simple_repeat Simple_repeat 2 21 0 207 111 0 28 chr5 28101918 28101954 -174983578 + (GA)n Simple_repeat Simple_repeat 2 36 0 905 112 0 0 chr5 28102083 28102208 -174983324 + THE1B LTR MaLR 236 360 -4 808 213 0 0 chr5 28102547 28102697 -174982835 + FRAM SINE Alu 1 150 -16 26 50 0 0 chr5 28102697 28102737 -174982795 + AT_rich Low_complexity Low_complexity 1 40 0 238 183 32 32 chr5 28102799 28102892 -174982640 + (TA)n Simple_repeat Simple_repeat 1 93 0 2352 74 7 3 chr5 28103024 28103333 -174982199 - AluY SINE Alu -1 310 1 511 77 26 0 chr5 28103445 28103523 -174982009 - MADE1 DNA Mariner 0 80 1 1387 250 66 50 chr5 28104992 28105389 -174980143 + L1MDa LINE L1 2697 3111 -3533 389 36 18 0 chr5 28105389 28105444 -174980088 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 1387 250 66 50 chr5 28105444 28105741 -174979791 + L1MDa LINE L1 3111 3402 -3242 373 256 144 26 chr5 28105902 28106097 -174979435 + L1MDa LINE L1 3971 4188 -2456 2521 281 77 42 chr5 28106187 28107053 -174978479 + L1M4 LINE L1 3477 4312 -1834 1900 165 19 32 chr5 28107053 28107422 -174978110 - THE1B LTR MaLR 0 364 1 10320 121 17 3 chr5 28107422 28108980 -174976552 - THE1B-int LTR MaLR 0 1580 1 1931 167 11 35 chr5 28108980 28109351 -174976181 - THE1B LTR MaLR 0 364 3 2521 281 77 42 chr5 28109351 28110075 -174975457 + L1M4 LINE L1 4312 5133 -1013 1327 184 35 42 chr5 28110075 28110363 -174975169 + AluJb SINE Alu 5 290 -22 2521 281 77 42 chr5 28110363 28110468 -174975064 + L1M4 LINE L1 5133 5233 -913 468 226 54 73 chr5 28110475 28110679 -174974853 + L1ME2 LINE L1 5955 6154 -10 222 171 0 0 chr5 28111216 28111257 -174974275 + CT-rich Low_complexity Low_complexity 4 44 0 339 352 34 22 chr5 28111345 28111524 -174974008 + L2 LINE L2 2635 2815 -499 3266 188 35 23 chr5 28111611 28112363 -174973169 - L1MA10 LINE L1 -9 6325 5565 190 308 0 0 chr5 28113419 28113471 -174972061 + MIR SINE MIR 90 141 -121 28 0 0 0 chr5 28114090 28114118 -174971414 + AT_rich Low_complexity Low_complexity 1 28 0 338 273 55 42 chr5 28114628 28114793 -174970739 + MLT1D LTR MaLR 18 184 -321 574 311 151 33 chr5 28115348 28115584 -174969948 + MLT1G LTR MaLR 1 208 -382 219 36 0 0 chr5 28115584 28115612 -174969920 + (TC)n Simple_repeat Simple_repeat 1 28 0 574 311 151 33 chr5 28115612 28115929 -174969603 + MLT1G LTR MaLR 208 590 0 23 0 0 0 chr5 28116485 28116508 -174969024 + AT_rich Low_complexity Low_complexity 1 23 0 270 0 0 0 chr5 28117875 28117905 -174967627 + (TC)n Simple_repeat Simple_repeat 2 31 0 24 32 0 0 chr5 28118228 28118259 -174967273 + AT_rich Low_complexity Low_complexity 1 31 0 2032 123 3 0 chr5 28118873 28119195 -174966337 - AluSp SINE Alu 0 323 1 765 192 160 54 chr5 28119391 28119990 -174965542 - MER4C LTR ERV1 -8 668 1 439 252 37 133 chr5 28119990 28120208 -174965324 - MIR SINE MIR -37 225 29 296 333 21 28 chr5 28120266 28120407 -174965125 + L2 LINE L2 2707 2846 -468 186 354 89 0 chr5 28120683 28120762 -174964770 + L2 LINE L2 3180 3265 -48 21 36 0 0 chr5 28120762 28120790 -174964742 + AT_rich Low_complexity Low_complexity 1 28 0 1741 137 17 37 chr5 28122675 28123103 -174962429 + Charlie3 DNA MER1_type 6 2711 0 1568 241 70 42 chr5 28123121 28123622 -174961910 + MLT1E2 LTR MaLR 47 561 -65 24 53 0 0 chr5 28123732 28123770 -174961762 + AT_rich Low_complexity Low_complexity 1 38 0 193 45 23 68 chr5 28123776 28123820 -174961712 + (TTTTTA)n Simple_repeat Simple_repeat 6 47 0 215 69 17 52 chr5 28123825 28123883 -174961649 + (TATAA)n Simple_repeat Simple_repeat 4 59 0 435 252 43 0 chr5 28123920 28124035 -174961497 - MER110A LTR ERV1 -348 120 1 22 0 0 0 chr5 28124158 28124180 -174961352 + AT_rich Low_complexity Low_complexity 1 22 0 27 73 0 0 chr5 28124490 28124545 -174960987 + AT_rich Low_complexity Low_complexity 1 55 0 1999 127 10 16 chr5 28124648 28124962 -174960570 - AluSx SINE Alu 0 312 1 34 0 0 0 chr5 28124989 28125023 -174960509 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr5 28125244 28125265 -174960267 + AT_rich Low_complexity Low_complexity 1 21 0 11217 101 3 34 chr5 28125484 28127901 -174957631 + L1PA7 LINE L1 3752 6153 -1 27 0 0 0 chr5 28127902 28127929 -174957603 + AT_rich Low_complexity Low_complexity 1 27 0 28 0 0 0 chr5 28129202 28129230 -174956302 + AT_rich Low_complexity Low_complexity 1 28 0 272 48 24 0 chr5 28130351 28130393 -174955139 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 683 24 0 0 chr5 28130404 28130488 -174955044 - L1PA3 LINE L1 -5 6150 6067 2824 204 22 22 chr5 28132017 28132609 -174952923 + L1MC1 LINE L1 20 611 -5815 1976 140 50 20 chr5 28132634 28132976 -174952556 + THE1B LTR MaLR 1 352 -12 628 192 8 0 chr5 28133080 28133205 -174952327 + L1MC1 LINE L1 887 1012 -5414 297 0 0 0 chr5 28133221 28133254 -174952278 + (CA)n Simple_repeat Simple_repeat 1 33 0 5144 262 58 54 chr5 28133255 28134851 -174950681 + L1MC1 LINE L1 2526 4170 -2256 249 111 0 0 chr5 28134851 28134887 -174950645 + tRNA-Arg-AGA tRNA tRNA 1 36 -40 5144 262 58 54 chr5 28134887 28135619 -174949913 + L1MC1 LINE L1 4170 4898 -1528 272 217 0 72 chr5 28135629 28135712 -174949820 + L1MC1 LINE L1 5103 5179 -1247 2161 113 0 3 chr5 28135715 28136016 -174949516 - AluSg SINE Alu -8 302 3 921 107 7 7 chr5 28136020 28136160 -174949372 - AluSp/q SINE Alu -6 307 168 4855 189 32 24 chr5 28136272 28136807 -174948725 + L1MC1 LINE L1 5539 6068 -545 891 222 102 68 chr5 28136807 28137190 -174948342 - MSTD LTR MaLR 0 396 1 4855 189 32 24 chr5 28137190 28137713 -174947819 + L1MC1 LINE L1 6068 6606 -7 183 80 0 0 chr5 28137871 28137896 -174947636 + (CA)n Simple_repeat Simple_repeat 1 25 0 194 0 39 0 chr5 28138264 28138290 -174947242 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 776 301 82 43 chr5 28138840 28139278 -174946254 + MLT1H1 LTR MaLR 100 554 -1 209 33 33 0 chr5 28139510 28139540 -174945992 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 233 329 14 70 chr5 28140718 28140861 -174944671 + MIR3 SINE MIR 69 203 -5 22 80 0 0 chr5 28141217 28141267 -174944265 + AT_rich Low_complexity Low_complexity 1 50 0 379 0 0 0 chr5 28142180 28142222 -174943310 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1976 118 3 24 chr5 28142222 28142510 -174943022 - AluSx SINE Alu -31 281 1 251 256 24 24 chr5 28142551 28142633 -174942899 + (CATA)n Simple_repeat Simple_repeat 3 84 0 254 269 106 0 chr5 28143458 28143562 -174941970 - Zaphod DNA AcHobo 0 4031 3917 2304 100 0 3 chr5 28143599 28143898 -174941634 - AluSg SINE Alu 0 310 13 267 378 21 59 chr5 28143920 28144158 -174941374 - MER115 DNA AcHobo -136 557 329 234 67 0 0 chr5 28144317 28144347 -174941185 + 5S rRNA rRNA 52 81 -40 14739 127 50 10 chr5 28144347 28144744 -174940788 + LOR1a-int LTR ERV1 623 1003 -7117 2124 109 22 0 chr5 28144744 28145055 -174940477 + L1PA6 LINE L1 5831 6148 -6 14739 127 50 10 chr5 28145055 28148081 -174937451 + LOR1a-int LTR ERV1 1003 4222 -3898 5917 136 7 8 chr5 28148097 28149041 -174936491 + LOR1a-int LTR ERV1 5122 6064 -2056 572 152 0 11 chr5 28149040 28149132 -174936400 + LOR1a-int LTR ERV1 8030 8120 0 * 2824 164 37 6 chr5 28149132 28149614 -174935918 + LOR1a LTR ERV1 1 497 0 905 231 34 4 chr5 28149710 28149948 -174935584 + L1MC3 LINE L1 7480 7724 -61 236 62 92 46 chr5 28149948 28150013 -174935519 + (TTATA)n Simple_repeat Simple_repeat 5 72 0 31 44 0 0 chr5 28150207 28150252 -174935280 + AT_rich Low_complexity Low_complexity 1 45 0 7950 94 3 32 chr5 28150290 28152318 -174933214 + L1PA7 LINE L1 4159 6153 -1 418 316 66 60 chr5 28152318 28153027 -174932505 + L1M4c LINE L1 1035 1750 -4634 1224 144 0 0 chr5 28153074 28153247 -174932285 + AluSq SINE Alu 1 173 -140 203 211 0 14 chr5 28153247 28153318 -174932214 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 240 202 107 12 chr5 28153318 28153402 -174932130 - L1MC4 LINE L1 -1337 6705 6614 238 253 24 0 chr5 28153331 28153414 -174932118 + L1MC4 LINE L1 6615 6699 -1343 * 510 119 60 12 chr5 28153444 28153612 -174931920 + (TA)n Simple_repeat Simple_repeat 1 176 0 297 105 76 9 chr5 28153651 28153756 -174931776 + (TA)n Simple_repeat Simple_repeat 1 112 0 322 274 0 60 chr5 28153765 28153882 -174931650 + L1MC4 LINE L1 6595 6704 -1338 * 348 206 0 82 chr5 28153815 28153912 -174931620 - L1MC4 LINE L1 -1340 6702 6614 308 245 32 53 chr5 28153911 28154005 -174931527 + L1MC4 LINE L1 6612 6703 -1339 * 309 169 14 28 chr5 28153960 28154031 -174931501 - L1MCa LINE L1 -4359 1856 1787 225 175 0 32 chr5 28154059 28154122 -174931410 - L1MCa LINE L1 -4362 1853 1793 624 131 36 20 chr5 28154124 28154383 -174931149 + (TA)n Simple_repeat Simple_repeat 1 263 0 270 316 34 28 chr5 28154576 28154753 -174930779 + L1MEc LINE L1 1994 2171 -4225 259 214 0 0 chr5 28154758 28154814 -174930718 - L1MB1 LINE L1 -212 5956 5901 274 190 0 0 chr5 28154908 28154966 -174930566 - L1MCa LINE L1 -4714 1682 1625 22 35 0 0 chr5 28155444 28155473 -174930059 + AT_rich Low_complexity Low_complexity 1 29 0 217 326 23 12 chr5 28156756 28156842 -174928690 + MIR SINE MIR 52 138 -124 23 33 0 0 chr5 28157300 28157330 -174928202 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr5 28157512 28157542 -174927990 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr5 28159420 28159441 -174926091 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr5 28160652 28160694 -174924838 + AT_rich Low_complexity Low_complexity 1 42 0 21980 60 5 2 chr5 28160906 28164584 -174920948 - L1PA5 LINE L1 0 6154 2468 693 333 42 17 chr5 28164617 28164971 -174920561 - ERVL LTR ERVL -1210 4554 4192 555 301 31 51 chr5 28164984 28165276 -174920256 - ERVL LTR ERVL -1715 4049 3764 301 336 15 45 chr5 28165358 28165492 -174920040 - ERVL LTR ERVL -2039 3615 3486 864 323 33 17 chr5 28165549 28165992 -174919540 - ERVL LTR ERVL -2280 3484 2951 1216 214 157 10 chr5 28166777 28167071 -174918461 - MER1B DNA MER1_type 0 337 1 21 57 0 0 chr5 28167071 28167106 -174918426 + AT_rich Low_complexity Low_complexity 1 35 0 1478 254 17 42 chr5 28167272 28167744 -174917788 - MLT1C LTR MaLR 0 467 8 2542 49 3 0 chr5 28169057 28169361 -174916171 + AluY SINE Alu 1 305 -6 211 209 0 0 chr5 28169565 28169608 -174915924 + (TG)n Simple_repeat Simple_repeat 2 44 0 227 292 138 0 chr5 28169758 28169888 -174915644 - MIR SINE MIR -59 203 56 2513 63 0 0 chr5 28170253 28170555 -174914977 - AluY SINE Alu -9 302 1 713 265 6 0 chr5 28170608 28170778 -174914754 - AluJb SINE Alu -8 304 134 22 35 0 0 chr5 28171346 28171375 -174914157 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr5 28171439 28171465 -174914067 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chr5 28171734 28171783 -174913749 + AT_rich Low_complexity Low_complexity 1 49 0 8168 154 16 41 chr5 28171879 28173377 -174912155 - THE1C-int LTR MaLR -117 1463 3 530 163 10 20 chr5 28173379 28173477 -174912055 - THE1C LTR MaLR 0 375 279 1143 226 23 39 chr5 28173487 28173796 -174911736 + MER31A LTR ERV1 173 476 -9 26 30 0 0 chr5 28174418 28174451 -174911081 + AT_rich Low_complexity Low_complexity 1 33 0 2149 86 131 0 chr5 28174756 28175070 -174910462 - THE1A LTR MaLR 0 355 1 11391 106 2 2 chr5 28175070 28176651 -174908881 - THE1A-int LTR MaLR 0 1580 1 2592 94 8 0 chr5 28176651 28177003 -174908529 - THE1A LTR MaLR 0 355 1 21 89 0 0 chr5 28177359 28177415 -174908117 + AT_rich Low_complexity Low_complexity 1 56 0 278 32 97 16 chr5 28177530 28177592 -174907940 + (TTATA)n Simple_repeat Simple_repeat 5 71 0 6407 112 80 8 chr5 28182177 28183377 -174902155 - LOR1-int LTR ERV1 -4314 3806 2520 304 420 8 0 chr5 28184405 28184524 -174901008 + L1MDb LINE L1 419 538 -5871 2519 214 74 7 chr5 28184575 28185268 -174900264 + L1MDb LINE L1 667 1405 -5004 222 43 0 64 chr5 28185383 28185451 -174900081 + (TTTA)n Simple_repeat Simple_repeat 1 107 0 222 43 0 64 chr5 28185451 28185498 -174900034 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 198 93 87 31 chr5 28185570 28185731 -174899801 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 239 157 72 0 chr5 28185747 28185830 -174899702 + (TA)n Simple_repeat Simple_repeat 1 89 0 494 214 17 8 chr5 28186002 28186119 -174899413 - L1MD1 LINE L1 -25 6217 6100 1682 202 33 19 chr5 28186134 28186500 -174899032 + MER44D DNA MER2_type 14 384 -321 852 251 73 42 chr5 28187364 28187746 -174897786 + LTR52 LTR ERVL 25 418 -3 1882 92 22 4 chr5 28188003 28188275 -174897257 - AluSc SINE Alu -32 277 1 1214 250 60 60 chr5 28188375 28188854 -174896678 + MLT2B1 LTR ERVL 1 482 -38 225 94 0 0 chr5 28188854 28188886 -174896646 + (CA)n Simple_repeat Simple_repeat 1 32 0 1214 250 60 60 chr5 28188886 28188922 -174896610 + MLT2B1 LTR ERVL 481 516 -4 22 35 0 0 chr5 28189754 28189783 -174895749 + AT_rich Low_complexity Low_complexity 1 29 0 1465 181 178 3 chr5 28189792 28190151 -174895381 - MSTA LTR MaLR 0 428 7 870 172 20 0 chr5 28191566 28191717 -174893815 + MER44D DNA MER2_type 580 605 0 2520 244 107 38 chr5 28191721 28191775 -174893757 - L1MD2 LINE L1 -152 6601 6552 251 28 28 0 chr5 28191775 28191811 -174893721 + (TG)n Simple_repeat Simple_repeat 1 37 0 2520 244 107 38 chr5 28191811 28193781 -174891751 - L1MD2 LINE L1 -201 6552 4423 3029 208 48 21 chr5 28193811 28194675 -174890857 - L1MD2 LINE L1 -4857 1683 801 307 420 8 0 chr5 28194726 28194845 -174890687 - L1MD2 LINE L1 -5871 672 553 293 313 101 52 chr5 28195074 28195362 -174890170 + MLT1J LTR MaLR 132 433 -78 1135 283 10 0 chr5 28195907 28196200 -174889332 + MLT1E2 LTR MaLR 331 626 0 276 358 32 8 chr5 28196799 28196922 -174888610 + MIR SINE MIR 20 145 -63 276 30 0 0 chr5 28198034 28198067 -174887465 + (TG)n Simple_repeat Simple_repeat 2 34 0 287 337 91 25 chr5 28198752 28198951 -174886581 + L2 LINE L2 2814 3025 -288 232 273 57 23 chr5 28199062 28199150 -174886382 + L2 LINE L2 3171 3261 -52 1997 94 14 3 chr5 28200749 28201036 -174884496 - AluSg SINE Alu -20 290 1 1693 205 67 29 chr5 28201074 28201566 -174883966 + MER9 LTR ERVK 1 511 0 267 235 15 0 chr5 28202146 28202214 -174883318 + (TA)n Simple_repeat Simple_repeat 2 70 0 202 244 56 100 chr5 28203583 28203673 -174881859 + MIR3 SINE MIR 87 172 -36 2780 53 123 0 chr5 28203755 28204154 -174881378 + LTR7 LTR ERV1 1 448 -2 758 285 102 35 chr5 28205169 28205799 -174879733 + L1ME LINE L1 528 1256 -4824 297 0 0 0 chr5 28205799 28205832 -174879700 + (CA)n Simple_repeat Simple_repeat 2 34 0 758 285 102 35 chr5 28205832 28206167 -174879365 + L1ME LINE L1 1256 1567 -4513 29 0 0 0 chr5 28206486 28206515 -174879017 + AT_rich Low_complexity Low_complexity 1 29 0 288 284 8 15 chr5 28206602 28206736 -174878796 - L1M4 LINE L1 -2146 4236 4104 580 232 58 7 chr5 28206737 28206875 -174878657 - L1MD2 LINE L1 -6370 170 26 573 128 11 0 chr5 28207120 28207214 -174878318 - L1PA3 LINE L1 -3 6152 6058 534 228 121 31 chr5 28207482 28207772 -174877760 - L1M4 LINE L1 -4030 2354 2039 842 236 0 116 chr5 28207810 28208094 -174877438 - MLT1A2 LTR MaLR -123 251 1 27 0 0 0 chr5 28209626 28209653 -174875879 + AT_rich Low_complexity Low_complexity 1 27 0 30 45 0 0 chr5 28209742 28209786 -174875746 + AT_rich Low_complexity Low_complexity 1 44 0 453 310 27 11 chr5 28210667 28210851 -174874681 + MER20 DNA MER1_type 33 219 0 2067 124 0 34 chr5 28211357 28211680 -174873852 + AluSq SINE Alu 1 312 -1 4957 211 46 36 chr5 28213146 28215315 -174870217 - L1MC1 LINE L1 -17 6316 4127 2448 62 0 0 chr5 28215835 28216144 -174869388 + AluY SINE Alu 1 309 -2 33 43 0 0 chr5 28216438 28216485 -174869047 + AT_rich Low_complexity Low_complexity 1 47 0 311 164 107 66 chr5 28216800 28216922 -174868610 + HAL1b LINE L1 1080 1206 -142 450 250 28 7 chr5 28217161 28217305 -174868227 + L1M4 LINE L1 3804 3950 -2196 2319 98 0 0 chr5 28217863 28218158 -174867374 + AluSx SINE Alu 6 300 -12 1773 180 8 42 chr5 28218299 28218654 -174866878 - MER2 DNA MER2_type -2 343 1 261 0 0 0 chr5 28219848 28219877 -174865655 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 96 0 0 chr5 28220638 28220711 -174864821 + AT_rich Low_complexity Low_complexity 1 73 0 287 223 65 93 chr5 28222699 28222838 -174862694 + MER104 DNA Tc2 2 136 -44 1168 121 6 6 chr5 28223032 28223205 -174862327 + AluSp SINE Alu 126 298 -15 337 242 181 40 chr5 28223701 28223850 -174861682 + MER5B DNA MER1_type 2 171 -7 23 97 0 0 chr5 28223908 28223980 -174861552 + AT_rich Low_complexity Low_complexity 1 72 0 659 237 29 23 chr5 28224170 28224343 -174861189 - MER58A DNA MER1_type -3 221 48 2285 80 14 39 chr5 28227074 28227438 -174858094 + L1PA8 LINE L1 5818 6172 0 21 89 0 0 chr5 28227447 28227503 -174858029 + AT_rich Low_complexity Low_complexity 1 56 0 6253 147 34 33 chr5 28227922 28228111 -174857421 - Tigger3b DNA MER2_type -1797 1231 1044 2374 59 16 13 chr5 28228111 28228416 -174857116 + AluY SINE Alu 1 306 -5 6253 147 34 33 chr5 28228416 28229454 -174856078 - Tigger3b DNA MER2_type -1984 1044 3 240 180 49 49 chr5 28229853 28229914 -174855618 - MLT1I LTR MaLR 0 409 349 1136 230 125 26 chr5 28230915 28231219 -174854313 - MLT1A1 LTR MaLR -31 334 1 1715 159 161 11 chr5 28231237 28231609 -174853923 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr5 28231619 28231648 -174853884 + AT_rich Low_complexity Low_complexity 1 29 0 1292 255 50 60 chr5 28232486 28232522 -174853010 - MLT2B1 LTR ERVL -4 516 481 225 94 0 0 chr5 28232522 28232554 -174852978 + (TG)n Simple_repeat Simple_repeat 1 32 0 1292 255 50 60 chr5 28232554 28233038 -174852494 - MLT2B1 LTR ERVL -39 481 1 2011 103 4 4 chr5 28233139 28233420 -174852112 + AluSc SINE Alu 1 281 -28 1105 263 53 33 chr5 28233681 28234076 -174851456 - LTR52 LTR ERVL -3 418 16 330 156 0 0 chr5 28234847 28234911 -174850621 + (TG)n Simple_repeat Simple_repeat 1 64 0 207 0 0 0 chr5 28235841 28235864 -174849668 + (GA)n Simple_repeat Simple_repeat 2 24 0 34 65 0 0 chr5 28235996 28236058 -174849474 + AT_rich Low_complexity Low_complexity 1 62 0 1962 99 62 0 chr5 28236074 28236347 -174849185 + AluSx SINE Alu 1 290 -22 194 371 149 4 chr5 28238129 28238404 -174847128 - L2 LINE L2 -107 3165 2851 306 0 0 0 chr5 28238472 28238498 -174847034 + (TG)n Simple_repeat Simple_repeat 1 60 0 306 0 0 0 chr5 28238498 28238532 -174847000 + (TG)n Simple_repeat Simple_repeat 1 34 0 24 0 0 0 chr5 28239193 28239217 -174846315 + AT_rich Low_complexity Low_complexity 1 24 0 6485 85 35 38 chr5 28239909 28240944 -174844588 - L1PA7 LINE L1 -755 5391 4360 5664 66 5 1 chr5 28240944 28241687 -174843845 + L1PA7 LINE L1 5404 6151 -3 3307 123 14 41 chr5 28241687 28242029 -174843503 + L1PA14 LINE L1 5481 5831 -330 2198 89 0 0 chr5 28242029 28242309 -174843223 + AluSg SINE Alu 1 280 -30 459 0 0 0 chr5 28242312 28242363 -174843169 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 3307 123 14 41 chr5 28242363 28242577 -174842955 + L1PA14 LINE L1 5833 6026 -135 554 227 161 36 chr5 28242848 28243167 -174842365 - MLT1G1 LTR MaLR -182 380 1 592 265 27 58 chr5 28243600 28243823 -174841709 - LTR16C LTR ERVL -94 397 182 355 109 47 16 chr5 28244619 28244683 -174840849 + HERVL LTR ERVL 558 623 -5031 26 0 0 0 chr5 28244720 28244746 -174840786 + AT_rich Low_complexity Low_complexity 1 26 0 259 351 54 0 chr5 28245532 28245643 -174839889 + MIR SINE MIR 25 141 -67 1164 218 16 4 chr5 28245935 28246187 -174839345 - MSTB LTR MaLR -165 261 7 5081 194 18 10 chr5 28246194 28247179 -174838353 - HERVL-B1 LTR ERVL -4643 1011 19 308 121 0 121 chr5 28247208 28247252 -174838280 - MLT2B1 LTR ERVL 0 520 489 279 0 0 0 chr5 28247252 28247283 -174838249 + (CA)n Simple_repeat Simple_repeat 2 32 0 308 121 0 121 chr5 28247283 28247321 -174838211 - MLT2B1 LTR ERVL -31 489 448 733 153 0 0 chr5 28247324 28247435 -174838097 - ERVL LTR ERVL -4856 908 798 969 226 27 93 chr5 28247447 28247995 -174837537 - MLT2A2 LTR ERVL -40 514 1 2204 105 105 28 chr5 28248282 28248324 -174837208 + L1MA3 LINE L1 5884 5921 -384 2885 106 48 33 chr5 28248324 28248806 -174836726 - LTR22B LTR ERVK -3 489 1 2204 105 105 28 chr5 28248806 28249155 -174836377 + L1MA3 LINE L1 5921 6305 0 23 0 0 0 chr5 28249155 28249178 -174836354 + AT_rich Low_complexity Low_complexity 1 23 0 1826 213 14 16 chr5 28249421 28249788 -174835744 + MLT1A2 LTR MaLR 7 372 -2 24 0 0 0 chr5 28250460 28250484 -174835048 + AT_rich Low_complexity Low_complexity 1 24 0 637 203 25 0 chr5 28250599 28250717 -174834815 + MLT1A2 LTR MaLR 6 126 -248 400 232 107 55 chr5 28251010 28251337 -174834195 + L1M4 LINE L1 4334 4677 -1469 22 0 0 0 chr5 28251346 28251368 -174834164 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr5 28251565 28251606 -174833926 + AT_rich Low_complexity Low_complexity 1 41 0 2094 149 22 8 chr5 28252172 28252527 -174833005 + THE1B LTR MaLR 3 362 -2 7201 157 19 9 chr5 28253012 28254299 -174831233 - HSMAR2 DNA Mariner -1 1301 3 2409 74 0 0 chr5 28254548 28254844 -174830688 + AluY SINE Alu 1 296 -15 259 254 0 0 chr5 28254845 28254908 -174830624 + MER53 DNA DNA 26 88 -101 377 246 98 0 chr5 28254999 28255121 -174830411 + L1MA9 LINE L1 6169 6302 -10 252 152 65 0 chr5 28255136 28255182 -174830350 - MER53 DNA DNA -140 49 1 599 322 48 9 chr5 28255221 28255448 -174830084 - MIR SINE MIR -8 254 19 616 295 54 75 chr5 28256150 28256628 -174828904 + MLT1H LTR MaLR 25 492 -57 1867 120 73 0 chr5 28256676 28256951 -174828581 - AluSc SINE Alu -14 295 1 207 114 0 0 chr5 28257070 28257105 -174828427 + (CAT)n Simple_repeat Simple_repeat 2 36 0 754 240 211 71 chr5 28257268 28257771 -174827761 + MLT1F1 LTR MaLR 1 567 0 24 32 0 0 chr5 28258140 28258171 -174827361 + AT_rich Low_complexity Low_complexity 1 31 0 28 99 0 0 chr5 28258265 28258356 -174827176 + AT_rich Low_complexity Low_complexity 1 91 0 22 0 0 0 chr5 28258822 28258844 -174826688 + AT_rich Low_complexity Low_complexity 1 22 0 640 237 5 0 chr5 28258844 28259059 -174826473 - AluYa5 SINE Alu 0 311 96 7552 48 1 1 chr5 28259159 28260829 -174824703 - L1PA5 LINE L1 -46 6108 4439 2718 162 100 42 chr5 28260835 28261423 -174824109 - L1M1 LINE L1 -5130 2435 1814 340 275 11 0 chr5 28263503 28263594 -174821938 + L2 LINE L2 2456 2547 -767 245 278 22 33 chr5 28263596 28263686 -174821846 - LTR16A1 LTR ERVL -3 454 366 511 271 24 24 chr5 28264153 28264289 -174821243 - L1MA10 LINE L1 -41 6293 6155 243 61 0 0 chr5 28264289 28264322 -174821210 + (TG)n Simple_repeat Simple_repeat 2 34 0 511 271 24 24 chr5 28264322 28264355 -174821177 - L1MA10 LINE L1 -178 6156 6124 6876 48 14 8 chr5 28264380 28265339 -174820193 + L1PA5 LINE L1 5183 6146 -8 2382 140 12 22 chr5 28265342 28265755 -174819777 + L1P4 LINE L1 5315 5723 -443 2912 218 19 8 chr5 28265769 28266412 -174819120 - L1MB1 LINE L1 -160 6029 5380 288 248 26 17 chr5 28267398 28267515 -174818017 + (TA)n Simple_repeat Simple_repeat 1 118 0 1238 213 109 30 chr5 28268392 28268730 -174816802 - MLT1A1 LTR MaLR 0 365 1 335 143 31 10 chr5 28268920 28269018 -174816514 + (TA)n Simple_repeat Simple_repeat 1 100 0 183 387 16 0 chr5 28269484 28269546 -174815986 + L2 LINE L2 2207 2269 -1045 21 0 0 0 chr5 28269607 28269628 -174815904 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr5 28269717 28269738 -174815794 + AT_rich Low_complexity Low_complexity 1 21 0 204 339 0 0 chr5 28271108 28271173 -174814359 + CT-rich Low_complexity Low_complexity 3 67 0 207 0 0 0 chr5 28271354 28271377 -174814155 + (TTTTTA)n Simple_repeat Simple_repeat 3 25 0 30 0 0 0 chr5 28273008 28273038 -174812494 + AT_rich Low_complexity Low_complexity 1 30 0 1466 147 126 4 chr5 28274767 28275145 -174810387 + MER1A DNA MER1_type 57 519 -14 32 67 0 0 chr5 28275503 28275563 -174809969 + AT_rich Low_complexity Low_complexity 1 60 0 229 258 97 32 chr5 28276084 28276177 -174809355 - MLT1L LTR MaLR -516 99 1 217 174 22 0 chr5 28276798 28276844 -174808688 + T-rich Low_complexity Low_complexity 4 50 0 310 261 142 8 chr5 28277609 28277743 -174807789 - MER67D LTR ERV1 -4 510 359 974 226 67 46 chr5 28277755 28278038 -174807494 - MER67C LTR ERV1 -307 403 115 3772 134 5 15 chr5 28278038 28278700 -174806832 + L1PA14 LINE L1 5187 5841 -320 3366 96 14 2 chr5 28278700 28279180 -174806352 + L1PA14 LINE L1 5666 6160 -1 700 203 49 0 chr5 28279180 28279323 -174806209 - MER67D LTR ERV1 -364 150 1 42381 37 23 2 chr5 28279549 28285341 -174800191 + L1PA3 LINE L1 3 5923 -232 1530 39 0 0 chr5 28285441 28285621 -174799911 - AluY SINE Alu -131 180 1 1704 260 9 0 chr5 28285621 28286075 -174799457 - L1M4 LINE L1 -874 5272 4815 1164 258 37 38 chr5 28287061 28287603 -174797929 - MLT2F LTR ERVL -60 603 9 758 252 104 43 chr5 28287611 28288004 -174797528 - ERVL-F LTR ERVL -18 5746 5330 21 0 0 0 chr5 28288172 28288193 -174797339 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr5 28288303 28288340 -174797192 + AT_rich Low_complexity Low_complexity 1 37 0 414 56 0 0 chr5 28288846 28288900 -174796632 - MADE1 DNA Mariner -1 79 26 212 189 0 19 chr5 28291135 28291188 -174794344 + A-rich Low_complexity Low_complexity 5 56 0 1712 111 58 4 chr5 28291303 28291564 -174793968 + AluSx SINE Alu 22 296 -16 24 91 0 0 chr5 28292397 28292463 -174793069 + AT_rich Low_complexity Low_complexity 1 66 0 605 255 129 57 chr5 28292476 28292767 -174792765 + MLT1A2 LTR MaLR 1 323 -51 2107 78 4 4 chr5 28292767 28293038 -174792494 - AluSc SINE Alu -13 296 26 605 255 129 57 chr5 28293038 28293095 -174792437 + MLT1A2 LTR MaLR 323 374 0 2370 74 0 3 chr5 28294335 28294634 -174790898 + AluY SINE Alu 2 299 -12 229 180 0 20 chr5 28294769 28294819 -174790713 - MER58 DNA MER1_type -8 2412 2364 209 300 100 14 chr5 28294866 28294936 -174790596 - MIR SINE MIR -180 82 7 210 229 73 94 chr5 28295185 28295281 -174790251 - L2 LINE L2 -12 3260 3167 262 269 30 75 chr5 28295296 28295430 -174790102 + MIR SINE MIR 13 140 -122 213 214 0 0 chr5 28295466 28295508 -174790024 + A-rich Low_complexity Low_complexity 3 44 0 2439 50 9 31 chr5 28295788 28296106 -174789426 + AluY SINE Alu 1 311 0 2068 107 6 31 chr5 28296448 28296767 -174788765 + AluY SINE Alu 1 311 0 1518 170 131 6 chr5 28296958 28297313 -174788219 + MSTA LTR MaLR 1 428 0 541 285 57 45 chr5 28297317 28297609 -174787923 - MLT1E1 LTR MaLR -21 633 275 908 301 81 22 chr5 28298002 28298521 -174787011 + L2 LINE L2 2182 2780 -534 837 229 0 0 chr5 28298525 28298678 -174786854 - FRAM SINE Alu -23 153 1 240 86 0 0 chr5 28299390 28299425 -174786107 + (ATG)n Simple_repeat Simple_repeat 1 35 0 225 291 18 0 chr5 28299848 28299903 -174785629 - MLT1K LTR MaLR -348 240 185 366 340 26 13 chr5 28299979 28300135 -174785397 - L2 LINE L2 -2 3311 3154 369 322 24 29 chr5 28300298 28300506 -174785026 + L1M4 LINE L1 4614 4820 -1326 22 56 0 0 chr5 28300667 28300703 -174784829 + AT_rich Low_complexity Low_complexity 1 36 0 1819 150 29 0 chr5 28301013 28301338 -174784194 + AluSx SINE Alu 1 333 0 1171 201 94 4 chr5 28301342 28301586 -174783946 - AluJo SINE Alu -30 282 17 1504 206 26 84 chr5 28301762 28301816 -174783716 + MER67D LTR ERV1 1 57 -457 318 26 0 0 chr5 28301816 28301855 -174783677 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1504 206 26 84 chr5 28301855 28302252 -174783280 + MER67D LTR ERV1 57 425 -89 2042 175 37 30 chr5 28302252 28302802 -174782730 - MLT2A2 LTR ERVL 0 554 1 2992 177 37 6 chr5 28303000 28303622 -174781910 - L1MA4 LINE L1 -2 6298 5658 22 0 0 0 chr5 28303949 28303971 -174781561 + AT_rich Low_complexity Low_complexity 1 22 0 184 282 154 0 chr5 28304702 28304755 -174780777 - MIR SINE MIR -2 260 217 243 0 0 0 chr5 28304755 28304782 -174780750 + (TG)n Simple_repeat Simple_repeat 2 28 0 184 282 154 0 chr5 28304782 28304838 -174780694 - MIR SINE MIR -45 217 134 6944 208 137 11 chr5 28305171 28306796 -174778736 - MER52A LTR ERV1 -9 1746 21 307 224 0 40 chr5 28307314 28307390 -174778142 - MER52A LTR ERV1 -1682 73 1 1157 144 64 5 chr5 28307392 28307579 -174777953 - MER52A-int LTR ERV1 -2 7089 6892 410 57 0 0 chr5 28307577 28307630 -174777902 - MER52A-int LTR ERV1 -1177 6028 5976 * 762 158 80 34 chr5 28307634 28307943 -174777589 - MER41-int LTR ERV1 -1256 4690 4298 1299 180 176 28 chr5 28308586 28309019 -174776513 - LTR54B LTR ERV1 -1 497 1 26 50 0 0 chr5 28309118 28309158 -174776374 + AT_rich Low_complexity Low_complexity 1 40 0 240 261 65 0 chr5 28309835 28309927 -174775605 - MIR SINE MIR -28 234 137 267 337 121 33 chr5 28309972 28310245 -174775287 - MLT1J2 LTR MaLR -41 409 113 442 284 35 21 chr5 28310352 28310493 -174775039 - MIR SINE MIR -117 145 3 1046 210 63 52 chr5 28312962 28313248 -174772284 + AluJb SINE Alu 1 289 -13 240 250 0 38 chr5 28313259 28313339 -174772193 + L1MC4 LINE L1 6636 6712 -1330 55 62 0 0 chr5 28314424 28314521 -174771011 + AT_rich Low_complexity Low_complexity 1 97 0 23 33 0 0 chr5 28314939 28314969 -174770563 + AT_rich Low_complexity Low_complexity 1 30 0 213 279 35 35 chr5 28315179 28315265 -174770267 - L2 LINE L2 -2 3270 3185 30 59 0 0 chr5 28317749 28317800 -174767732 + AT_rich Low_complexity Low_complexity 1 51 0 185 0 40 0 chr5 28318194 28318219 -174767313 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 614 308 81 45 chr5 28318367 28318729 -174766803 + MLT1G LTR MaLR 1 354 -176 413 240 64 8 chr5 28318728 28318853 -174766679 + MLT1G LTR MaLR 457 588 -2 * 304 373 8 0 chr5 28318901 28319019 -174766513 - L2 LINE L2 -970 2344 2226 2541 20 0 7 chr5 28319799 28320096 -174765436 - AluY SINE Alu -16 295 1 326 337 49 16 chr5 28320541 28320725 -174764807 + L1MEd LINE L1 962 1151 -4968 318 289 146 29 chr5 28320747 28320986 -174764546 + L1MEd LINE L1 1228 1494 -4816 579 305 81 40 chr5 28321169 28321210 -174764322 + MLT1L LTR MaLR 171 209 -406 1811 110 3 51 chr5 28321210 28321502 -174764030 + AluSx SINE Alu 1 278 -34 579 305 81 40 chr5 28321502 28321880 -174763652 + MLT1L LTR MaLR 209 607 -8 1817 152 53 22 chr5 28323437 28323793 -174761739 + L1PA16 LINE L1 5791 6157 -9 27 49 0 0 chr5 28323795 28323836 -174761696 + AT_rich Low_complexity Low_complexity 1 41 0 1752 215 90 35 chr5 28323839 28324318 -174761214 - MLT1D LTR MaLR 0 505 1 24 0 0 0 chr5 28324850 28324874 -174760658 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr5 28324997 28325030 -174760502 + AT_rich Low_complexity Low_complexity 1 33 0 2139 82 0 36 chr5 28325129 28325435 -174760097 - AluY SINE Alu -16 295 1 12586 185 36 17 chr5 28325435 28326677 -174758855 - L1MA2 LINE L1 -18 7705 6488 2203 127 0 0 chr5 28326677 28326984 -174758548 - AluSg SINE Alu -3 307 1 12586 185 36 17 chr5 28326984 28330181 -174755351 - L1MA2 LINE L1 -1235 6488 3169 5024 112 19 29 chr5 28330192 28330517 -174755015 - L1PB1 LINE L1 -5 6862 6535 2754 31 0 3 chr5 28330517 28330836 -174754696 - AluYb8 SINE Alu 0 318 1 5024 112 19 29 chr5 28330836 28331329 -174754203 - L1PB1 LINE L1 -332 6535 6052 * 11320 178 93 18 chr5 28331323 28331979 -174753553 - L1PB1 LINE L1 -1089 5773 5168 189 0 0 0 chr5 28331979 28332000 -174753532 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 11320 178 93 18 chr5 28332000 28336290 -174749242 - L1PB1 LINE L1 -1694 5168 1 2543 143 9 83 chr5 28336299 28336616 -174748916 - L1MA2 LINE L1 -4387 3178 2920 1983 143 0 3 chr5 28336616 28336909 -174748623 + AluSq SINE Alu 1 292 -21 2543 143 9 83 chr5 28336909 28337159 -174748373 - L1MA2 LINE L1 -4645 2920 2653 328 233 0 0 chr5 28337163 28337223 -174748309 - L1MA2 LINE L1 -5672 1893 1834 7958 208 33 8 chr5 28337323 28337465 -174748067 - L1MA2 LINE L1 -5975 1590 1453 350 0 44 0 chr5 28337465 28337510 -174748022 + (CTATT)n Simple_repeat Simple_repeat 2 48 0 7958 208 33 8 chr5 28337510 28338900 -174746632 - L1MA2 LINE L1 -6112 1453 19 513 161 73 3 chr5 28339283 28339394 -174746138 + L1MA9 LINE L1 6166 6282 -18 997 174 20 49 chr5 28340976 28341223 -174744309 - L1MC1 LINE L1 0 6333 6094 17147 60 1 1 chr5 28341538 28344562 -174740970 + L1PA5 LINE L1 3131 6154 0 21 0 0 0 chr5 28344926 28344947 -174740585 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr5 28344986 28345015 -174740517 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr5 28345174 28345203 -174740329 + AT_rich Low_complexity Low_complexity 1 29 0 708 182 8 0 chr5 28345328 28345460 -174740072 + FLAM_C SINE Alu 1 133 0 204 290 0 0 chr5 28345476 28345538 -174739994 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 269 271 75 37 chr5 28345568 28345675 -174739857 - L2 LINE L2 -16 3297 3187 26 50 0 0 chr5 28346080 28346120 -174739412 + AT_rich Low_complexity Low_complexity 1 40 0 2269 105 3 10 chr5 28346340 28346654 -174738878 + AluSx SINE Alu 1 312 0 24 0 0 0 chr5 28346701 28346725 -174738807 + AT_rich Low_complexity Low_complexity 1 24 0 29 47 0 0 chr5 28347332 28347375 -174738157 + AT_rich Low_complexity Low_complexity 1 43 0 282 95 0 0 chr5 28347508 28347550 -174737982 + (TC)n Simple_repeat Simple_repeat 1 42 0 25 90 0 0 chr5 28347957 28348024 -174737508 + AT_rich Low_complexity Low_complexity 1 67 0 468 231 26 0 chr5 28348527 28348644 -174736888 - L1MA8 LINE L1 0 6291 6172 * 1310 171 12 4 chr5 28348633 28348879 -174736653 + L1MA8 LINE L1 5910 6157 -134 219 36 0 0 chr5 28349527 28349555 -174735977 + (CA)n Simple_repeat Simple_repeat 2 29 0 27 29 0 0 chr5 28350114 28350148 -174735384 + AT_rich Low_complexity Low_complexity 1 34 0 5174 223 27 26 chr5 28350732 28353173 -174732359 + L1MC1 LINE L1 3884 6324 -9 208 231 22 66 chr5 28354115 28354206 -174731326 - MIR SINE MIR -54 208 122 713 288 5 26 chr5 28355102 28355293 -174730239 - Tigger3(Golem) DNA MER2_type -2842 187 1 22 0 0 0 chr5 28355519 28355541 -174729991 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr5 28356721 28356742 -174728790 + AT_rich Low_complexity Low_complexity 1 21 0 683 147 202 23 chr5 28356765 28356894 -174728638 - AluSg/x SINE Alu -24 288 137 388 93 27 0 chr5 28356894 28356969 -174728563 + (TA)n Simple_repeat Simple_repeat 1 77 0 1924 123 5 115 chr5 28357999 28358373 -174727159 - MER1B DNA MER1_type -4 335 3 1963 74 0 0 chr5 28358730 28359009 -174726523 - AluY SINE Alu 0 317 39 1710 172 40 0 chr5 28359358 28359655 -174725877 - AluJb SINE Alu -3 309 1 41 21 0 0 chr5 28359716 28359764 -174725768 + AT_rich Low_complexity Low_complexity 1 48 0 275 302 28 0 chr5 28363189 28363295 -174722237 + HsTC2 DNA Tc2 4 112 -1786 266 307 78 30 chr5 28363524 28363690 -174721842 + L2 LINE L2 1836 2009 -1305 1512 236 20 9 chr5 28364625 28364969 -174720563 + MLT2C1 LTR ERVL 2 349 -48 290 87 22 0 chr5 28364974 28365020 -174720512 + (TC)n Simple_repeat Simple_repeat 1 47 0 275 203 0 0 chr5 28365032 28365091 -174720441 + MLT2C1 LTR ERVL 462 520 0 237 288 59 20 chr5 28365258 28365411 -174720121 + L1M2c LINE L1 1822 1980 -4809 304 244 31 75 chr5 28365433 28365593 -174719939 + L1MEc LINE L1 1178 1330 -5066 24 32 0 0 chr5 28365718 28365749 -174719783 + AT_rich Low_complexity Low_complexity 1 31 0 27 49 0 0 chr5 28365861 28365902 -174719630 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr5 28366470 28366499 -174719033 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr5 28366949 28366970 -174718562 + (A)n Simple_repeat Simple_repeat 1 21 0 263 356 25 0 chr5 28367215 28367333 -174718199 - L2 LINE L2 -852 2462 2342 398 237 58 64 chr5 28367497 28367670 -174717862 + MLT1H LTR MaLR 3 174 -375 244 302 107 65 chr5 28368968 28369183 -174716349 - LTR16A LTR ERVL -202 248 25 265 277 66 36 chr5 28369243 28369380 -174716152 + MLT1H LTR MaLR 3 143 -406 2314 68 0 7 chr5 28369431 28369723 -174715809 + AluY SINE Alu 3 292 -19 232 188 94 16 chr5 28369905 28369969 -174715563 + MLT1H LTR MaLR 481 549 0 25 0 0 0 chr5 28370007 28370032 -174715500 + AT_rich Low_complexity Low_complexity 1 25 0 243 156 13 52 chr5 28370569 28370646 -174714886 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 225 146 0 0 chr5 28370667 28370708 -174714824 - LTR66 LTR ERVL -172 438 398 230 242 22 22 chr5 28370712 28370803 -174714729 + L1MC4 LINE L1 6614 6704 -1338 540 130 16 49 chr5 28370819 28371004 -174714528 + (TA)n Simple_repeat Simple_repeat 2 180 0 216 196 11 22 chr5 28371020 28371112 -174714420 + (TA)n Simple_repeat Simple_repeat 2 92 0 27 49 0 0 chr5 28371994 28372035 -174713497 + AT_rich Low_complexity Low_complexity 1 41 0 2840 10 0 0 chr5 28373162 28373474 -174712058 - AluYb8 SINE Alu -6 312 1 22 70 0 0 chr5 28373501 28373544 -174711988 + AT_rich Low_complexity Low_complexity 1 43 0 24 77 0 0 chr5 28374623 28374675 -174710857 + AT_rich Low_complexity Low_complexity 1 52 0 208 286 22 11 chr5 28374863 28374954 -174710578 + (TA)n Simple_repeat Simple_repeat 1 92 0 1298 231 19 53 chr5 28375522 28375898 -174709634 - MLT1A1 LTR MaLR -2 363 1 237 268 0 14 chr5 28376513 28376584 -174708948 + (TA)n Simple_repeat Simple_repeat 2 71 0 24 53 0 0 chr5 28376782 28376820 -174708712 + AT_rich Low_complexity Low_complexity 1 38 0 1794 167 44 101 chr5 28377557 28378012 -174707520 - MSTB1 LTR MaLR 0 432 4 237 242 0 0 chr5 28378715 28378781 -174706751 + L1ME LINE L1 5757 5822 -348 11542 173 15 7 chr5 28378851 28381942 -174703590 + L1PA12 LINE L1 2958 6074 -94 36 40 0 0 chr5 28382047 28382097 -174703435 + AT_rich Low_complexity Low_complexity 1 50 0 26 69 0 35 chr5 28382337 28382424 -174703108 + AT_rich Low_complexity Low_complexity 1 84 0 291 157 0 0 chr5 28383266 28383317 -174702215 + A-rich Low_complexity Low_complexity 1 51 0 216 97 0 0 chr5 28383334 28383365 -174702167 + (TG)n Simple_repeat Simple_repeat 2 32 0 3024 230 22 18 chr5 28383365 28384040 -174701492 - ERVL LTR ERVL -3852 1912 1235 183 80 0 0 chr5 28384040 28384065 -174701467 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 434 62 0 0 chr5 28384067 28384131 -174701401 - Alu SINE Alu -2 308 245 2229 211 17 6 chr5 28384176 28384645 -174700887 + ERVL LTR ERVL 766 1239 -4525 1927 70 12 12 chr5 28384653 28384911 -174700621 + AluSq SINE Alu 1 258 -55 1396 193 23 36 chr5 28384911 28385208 -174700324 + MER61A LTR ERV1 49 343 0 471 72 0 0 chr5 28385264 28385333 -174700199 - AluS SINE Alu -244 69 1 27 0 0 0 chr5 28386041 28386068 -174699464 + AT_rich Low_complexity Low_complexity 1 27 0 1318 187 142 89 chr5 28387104 28387521 -174698011 - Tigger2 DNA MER2_type 0 2718 2280 341 229 0 0 chr5 28387526 28387587 -174697945 + MER8 DNA MER2_type 179 239 0 703 230 52 17 chr5 28390893 28391067 -174694465 - MER20 DNA MER1_type -38 181 2 9539 184 41 29 chr5 28391615 28393242 -174692290 - L1PA13 LINE L1 0 6163 4557 3559 71 2 0 chr5 28393242 28393694 -174691838 - MLT2A2 LTR ERVL 0 453 1 9539 184 41 29 chr5 28393694 28394963 -174690569 - L1PA13 LINE L1 -1606 4557 3224 2097 100 0 7 chr5 28394963 28395272 -174690260 - AluSc SINE Alu 0 307 1 9539 184 41 29 chr5 28395272 28395443 -174690089 - L1PA13 LINE L1 -2939 3224 3057 3997 191 8 0 chr5 28395460 28396220 -174689312 + L1P LINE L1 1924 2689 -3457 1397 246 66 0 chr5 28398082 28398431 -174687101 + MER67D LTR ERV1 5 376 -138 1756 159 55 0 chr5 28398589 28398878 -174686654 - AluSg SINE Alu -3 307 3 26 0 0 0 chr5 28398888 28398914 -174686618 + AT_rich Low_complexity Low_complexity 1 26 0 2953 96 41 2 chr5 28399263 28399699 -174685833 - MLT2A2 LTR ERVL 0 453 1 26 82 0 0 chr5 28399786 28399847 -174685685 + AT_rich Low_complexity Low_complexity 1 61 0 619 298 64 34 chr5 28400410 28400705 -174684827 - LTR16C LTR ERVL 0 491 188 15621 112 47 23 chr5 28400828 28403196 -174682336 + Charlie3 DNA MER1_type 1 2424 -286 1907 139 7 19 chr5 28403296 28403605 -174681927 + Charlie3 DNA MER1_type 2402 2706 -4 241 327 29 0 chr5 28404102 28404206 -174681326 - L2 LINE L2 -1292 2022 1916 408 336 92 37 chr5 28404953 28405280 -174680252 + L1ME LINE L1 5450 5794 -327 1765 152 18 11 chr5 28405322 28405634 -174679898 + AluSx SINE Alu 1 314 0 789 219 122 15 chr5 28405710 28405936 -174679596 - AluJo SINE Alu 0 312 66 1796 131 7 18 chr5 28406276 28406597 -174678935 - AluSx SINE Alu 0 321 4 3956 171 30 52 chr5 28408196 28409076 -174676456 + L1MB3 LINE L1 5322 6181 -2 23 0 0 0 chr5 28410280 28410303 -174675229 + AT_rich Low_complexity Low_complexity 1 23 0 1588 216 39 23 chr5 28412501 28412885 -174672647 + MLT1B LTR MaLR 1 390 0 11368 207 34 31 chr5 28413419 28414552 -174670980 - L1 LINE L1 -909 5237 4109 317 89 0 0 chr5 28414552 28414597 -174670935 - MADE1 DNA Mariner -35 45 1 11368 207 34 31 chr5 28414597 28415010 -174670522 - L1 LINE L1 -2037 4109 3699 2163 128 10 0 chr5 28415010 28415316 -174670216 - AluSx SINE Alu -2 310 2 11368 207 34 31 chr5 28415316 28415343 -174670189 - L1 LINE L1 -2447 3699 3674 1612 201 28 3 chr5 28415343 28415662 -174669870 - L1PB4 LINE L1 -5 6151 5825 11368 207 34 31 chr5 28415662 28416971 -174668561 - L1 LINE L1 -2472 3674 2300 305 253 160 38 chr5 28417061 28417298 -174668234 - L1M4 LINE L1 -1074 5072 4807 7775 18 0 0 chr5 28417450 28418972 -174666560 + L1PA3 LINE L1 4634 6151 -4 507 303 17 27 chr5 28418977 28419274 -174666258 + L1ME LINE L1 5317 5610 -552 24 0 0 0 chr5 28419394 28419418 -174666114 + AT_rich Low_complexity Low_complexity 1 24 0 965 320 38 12 chr5 28420740 28421159 -174664373 - HERV16 LTR ERVL -3728 1268 839 879 319 81 23 chr5 28421471 28421903 -174663629 - LTR16B LTR ERVL 0 464 8 270 352 30 30 chr5 28422527 28422763 -174662769 - L2 LINE L2 -4 3309 3074 578 326 126 26 chr5 28422796 28423146 -174662386 - L2 LINE L2 -1475 1839 1455 24 0 0 0 chr5 28424395 28424419 -174661113 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr5 28424686 28424722 -174660810 + AT_rich Low_complexity Low_complexity 1 36 0 31 44 0 0 chr5 28425745 28425790 -174659742 + AT_rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr5 28426095 28426124 -174659408 + AT_rich Low_complexity Low_complexity 1 29 0 580 129 10 0 chr5 28426124 28426225 -174659307 - L1PA13 LINE L1 0 6814 6713 6314 199 108 3 chr5 28426225 28427300 -174658232 + THE1B-int LTR MaLR 393 1580 0 2138 150 22 19 chr5 28427302 28427663 -174657869 + THE1B LTR MaLR 3 364 0 2871 148 9 0 chr5 28427664 28428116 -174657416 - L1PA13 LINE L1 -213 6599 6144 1567 179 21 3 chr5 28428116 28428401 -174657131 - AluSq SINE Alu -23 290 1 14442 211 33 11 chr5 28428402 28428778 -174656754 - L1PA13 LINE L1 -751 6046 5680 2124 100 4 0 chr5 28428778 28429078 -174656454 - AluY SINE Alu 0 301 1 14442 211 33 11 chr5 28429078 28430395 -174655137 - L1PA13 LINE L1 -1117 5680 4393 255 79 0 0 chr5 28430395 28430433 -174655099 + (TG)n Simple_repeat Simple_repeat 2 39 0 14442 211 33 11 chr5 28430433 28432097 -174653435 - L1PA13 LINE L1 -2404 4393 2614 1751 167 27 13 chr5 28432095 28432818 -174652714 - L1PA13 LINE L1 -4892 1895 1 * 22 0 0 0 chr5 28433160 28433182 -174652350 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr5 28433239 28433260 -174652272 + AT_rich Low_complexity Low_complexity 1 21 0 228 133 89 0 chr5 28435364 28435409 -174650123 - L2 LINE L2 0 3313 3265 25 0 0 0 chr5 28435421 28435446 -174650086 + AT_rich Low_complexity Low_complexity 1 25 0 276 270 144 0 chr5 28435637 28435748 -174649784 + L1ME LINE L1 5562 5688 -433 192 40 0 0 chr5 28436900 28436925 -174648607 + (CA)n Simple_repeat Simple_repeat 2 26 0 213 222 0 0 chr5 28436925 28436988 -174648544 + (TATG)n Simple_repeat Simple_repeat 2 64 0 313 92 0 46 chr5 28437122 28437139 -174648393 + (TAAAAA)n Simple_repeat Simple_repeat 3 19 -45 6140 10 0 0 chr5 28437139 28437832 -174647700 + L1PA3 LINE L1 5463 6155 0 313 92 0 46 chr5 28437832 28437879 -174647653 + (TAAAAA)n Simple_repeat Simple_repeat 19 64 0 1516 123 58 0 chr5 28438093 28438354 -174647178 + L1MA5A LINE L1 6018 6293 -4 483 325 90 62 chr5 28438519 28439052 -174646480 - ERVL LTR ERVL -4311 1453 906 258 185 0 31 chr5 28439875 28439940 -174645592 + (TTTA)n Simple_repeat Simple_repeat 1 63 0 184 197 13 13 chr5 28440312 28440388 -174645144 + (TA)n Simple_repeat Simple_repeat 2 77 0 22 0 0 0 chr5 28440713 28440735 -174644797 + AT_rich Low_complexity Low_complexity 1 22 0 31 58 0 0 chr5 28440903 28440955 -174644577 + AT_rich Low_complexity Low_complexity 1 52 0 229 122 68 0 chr5 28441214 28441288 -174644244 + (TATAA)n Simple_repeat Simple_repeat 1 79 0 346 189 73 12 chr5 28441304 28441468 -174644064 + (TA)n Simple_repeat Simple_repeat 1 174 0 * 352 228 5 54 chr5 28441399 28441583 -174643949 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 469 155 32 75 chr5 28441500 28441757 -174643775 + (CTATA)n Simple_repeat Simple_repeat 1 246 0 2428 197 22 15 chr5 28441761 28442299 -174643233 + L1MC3 LINE L1 7237 7778 -7 5922 127 88 67 chr5 28444498 28446467 -174639065 + pTR5 LTR ERV1 741 2438 0 5991 72 0 0 chr5 28646689 28647510 -174438022 - L1PA7 LINE L1 -2 6152 5328 216 67 0 0 chr5 28647599 28647629 -174437903 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 255 103 0 0 chr5 28649057 28649096 -174436436 + (CA)n Simple_repeat Simple_repeat 2 40 0 285 169 28 45 chr5 28649384 28649562 -174435970 + CT-rich Low_complexity Low_complexity 5 179 0 301 248 88 29 chr5 28649562 28649699 -174435833 - L1M2 LINE L1 -4028 2821 2677 362 308 178 30 chr5 28649705 28650075 -174435457 - HAL1 LINE L1 -1207 1300 876 404 344 73 9 chr5 28651213 28651431 -174434101 + MIR SINE MIR 21 252 -10 371 323 68 68 chr5 28651511 28651759 -174433773 + LTR33 LTR ERVL 12 259 -262 257 305 12 0 chr5 28651834 28651916 -174433616 + LTR33 LTR ERVL 370 452 -69 442 288 23 0 chr5 28652207 28652339 -174433193 - MLT1H LTR MaLR -4 545 411 587 264 82 30 chr5 28652421 28652656 -174432876 - MLT1H LTR MaLR -261 288 1 590 13 53 0 chr5 28652982 28653058 -174432474 - L1PA4 LINE L1 -2 6153 6074 374 339 63 0 chr5 28653467 28653656 -174431876 + MLT1J2 LTR MaLR 12 212 -238 240 254 0 0 chr5 28653668 28653727 -174431805 + CT-rich Low_complexity Low_complexity 2 60 0 647 282 87 21 chr5 28655418 28655659 -174429873 + MIR SINE MIR 5 261 -1 246 270 67 11 chr5 28655714 28655803 -174429729 + L2 LINE L2 3220 3313 0 338 288 153 23 chr5 28655931 28656108 -174429424 + MIR SINE MIR 41 240 -22 269 185 7 40 chr5 28656872 28657023 -174428509 + (TA)n Simple_repeat Simple_repeat 2 147 0 236 325 60 0 chr5 28657046 28657129 -174428403 - L2 LINE L2 -44 3228 3141 267 393 0 0 chr5 28657677 28657761 -174427771 - L2 LINE L2 -38 3234 3151 6060 173 10 14 chr5 28658042 28660156 -174425376 + L1MA3 LINE L1 4190 6305 0 25 31 0 0 chr5 28660160 28660192 -174425340 + AT_rich Low_complexity Low_complexity 1 32 0 292 109 0 36 chr5 28660284 28660339 -174425193 - L1MA10 LINE L1 -14 6320 6268 1360 217 4 0 chr5 28660339 28660569 -174424963 + MER8 DNA MER2_type 2 232 -7 207 69 0 0 chr5 28661745 28661774 -174423758 + (TG)n Simple_repeat Simple_repeat 1 29 0 225 304 0 0 chr5 28661964 28662043 -174423489 + L1MDa LINE L1 1636 1714 -4826 333 236 158 24 chr5 28662051 28662178 -174423354 - L1MCa LINE L1 -3215 3211 3068 21 36 0 0 chr5 28662290 28662318 -174423214 + AT_rich Low_complexity Low_complexity 1 28 0 600 243 61 43 chr5 28662475 28662936 -174422596 - L1MCa LINE L1 -3667 2759 2250 366 231 40 0 chr5 28662975 28663228 -174422304 + (TA)n Simple_repeat Simple_repeat 1 263 0 328 247 35 0 chr5 28663277 28663362 -174422170 + MLT1B LTR MaLR 256 343 -47 2420 272 66 24 chr5 28663363 28663501 -174422031 + L1M4 LINE L1 3117 3248 -2898 2116 96 3 20 chr5 28663501 28663843 -174421689 + AluSc SINE Alu 1 309 0 2420 272 66 24 chr5 28663843 28663917 -174421615 + L1M4 LINE L1 3248 3317 -2829 1919 203 40 26 chr5 28663917 28664190 -174421342 - MSTB1 LTR MaLR 0 432 149 1531 214 7 0 chr5 28664190 28664484 -174421048 + AluJb SINE Alu 1 296 -16 1919 203 40 26 chr5 28664484 28664633 -174420899 - MSTB1 LTR MaLR -283 149 4 2420 272 66 24 chr5 28664633 28665537 -174419995 + L1M4 LINE L1 3317 4281 -1865 1192 126 16 0 chr5 28665528 28665718 -174419814 + L1P5 LINE L1 5410 5602 -549 * 5758 125 12 3 chr5 28665825 28666720 -174418812 + L1PA10 LINE L1 5262 6164 -4 462 262 90 0 chr5 28667457 28667602 -174417930 - MIR SINE MIR -34 228 71 214 361 92 17 chr5 28668686 28668805 -174416727 + MIR SINE MIR 14 141 -121 400 252 8 53 chr5 28668908 28669039 -174416493 + MIR SINE MIR 135 259 -3 23 86 0 0 chr5 28669700 28669758 -174415774 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr5 28670290 28670312 -174415220 + AT_rich Low_complexity Low_complexity 1 22 0 2375 75 7 0 chr5 28670768 28671075 -174414457 - AluY SINE Alu -2 309 1 436 272 40 8 chr5 28674116 28674241 -174411291 + L2 LINE L2 3185 3313 0 1373 243 65 29 chr5 28674619 28675067 -174410465 + MLT1C LTR MaLR 4 467 0 23 33 0 0 chr5 28675082 28675112 -174410420 + AT_rich Low_complexity Low_complexity 1 30 0 1903 161 77 48 chr5 28675236 28675652 -174409880 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr5 28675684 28675706 -174409826 + AT_rich Low_complexity Low_complexity 1 22 0 378 0 0 0 chr5 28676287 28676329 -174409203 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 303 326 65 22 chr5 28677083 28677221 -174408311 + MIR SINE MIR 28 171 -91 1429 108 58 0 chr5 28677223 28677464 -174408068 + L1MA6 LINE L1 6040 6294 -6 454 239 181 32 chr5 28677930 28678085 -174407447 - MER5A DNA MER1_type 0 189 12 1579 162 54 40 chr5 28678423 28678793 -174406739 + THE1C LTR MaLR 1 375 0 1820 152 0 0 chr5 28678858 28679141 -174406391 - AluSq SINE Alu -30 283 1 380 111 0 0 chr5 28679165 28679219 -174406313 + MSTB LTR MaLR 2 55 -371 433 159 0 0 chr5 28679219 28679288 -174406244 - L1P LINE L1 -1152 4994 4926 * 1496 123 36 12 chr5 28679285 28679536 -174405996 + L1PA13 LINE L1 5887 6143 -20 1589 201 64 3 chr5 28679572 28679886 -174405646 + MSTB LTR MaLR 94 426 0 437 162 57 57 chr5 28679943 28680048 -174405484 - MLT1D LTR MaLR 0 505 401 279 0 0 0 chr5 28680190 28680221 -174405311 + (TG)n Simple_repeat Simple_repeat 2 32 0 2573 55 0 0 chr5 28681753 28682061 -174403471 - AluY SINE Alu -2 309 2 1811 146 71 31 chr5 28682572 28682895 -174402637 + MER1B DNA MER1_type 2 337 0 27 29 0 0 chr5 28683468 28683502 -174402030 + AT_rich Low_complexity Low_complexity 1 34 0 1771 295 36 14 chr5 28683536 28684037 -174401495 + MLT1F LTR MaLR 29 540 -2 205 248 18 0 chr5 28684246 28684359 -174401173 + (TA)n Simple_repeat Simple_repeat 1 115 0 222 128 0 0 chr5 28685480 28685519 -174400013 + (TG)n Simple_repeat Simple_repeat 2 40 0 242 384 18 0 chr5 28686726 28686838 -174398694 + MER81 DNA DNA 1 114 0 1468 256 39 18 chr5 28686902 28687390 -174398142 + MLT1D LTR MaLR 4 501 -4 2200 39 0 0 chr5 28687836 28688094 -174397438 + AluY SINE Alu 43 300 -11 685 228 57 24 chr5 28688949 28689160 -174396372 - MER39 LTR ERV1 -41 666 449 222 37 0 0 chr5 28689299 28689326 -174396206 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 814 149 0 0 chr5 28689326 28689440 -174396092 - AluJb SINE Alu -192 120 7 25 31 0 0 chr5 28690014 28690046 -174395486 + AT_rich Low_complexity Low_complexity 1 32 0 1288 170 140 8 chr5 28691030 28691295 -174394237 + AluJb SINE Alu 1 300 -2 247 301 166 5 chr5 28691330 28691523 -174394009 + MER46C DNA MER2_type 94 317 -21 250 340 60 10 chr5 28691679 28691779 -174393753 - MIR SINE MIR -81 181 77 1736 199 17 11 chr5 28692698 28693060 -174392472 - MLT1A1 LTR MaLR 0 365 2 1574 167 0 99 chr5 28693252 28693635 -174391897 - MER7A DNA MER2_type 0 346 4 356 167 26 13 chr5 28693657 28693735 -174391797 + MER67C LTR ERV1 595 673 -37 1156 144 18 52 chr5 28694312 28694541 -174390991 - Tigger2a DNA MER2_type -212 222 2 801 63 9 0 chr5 28694695 28694806 -174390726 + LTR22A LTR ERVK 1 112 -346 655 159 16 16 chr5 28694807 28694933 -174390599 - HERVK22 LTR ERVK -6631 206 81 3280 88 11 4 chr5 28694997 28695451 -174390081 - LTR22A LTR ERVK -1 457 1 219 261 0 0 chr5 28695586 28695632 -174389900 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 323 313 35 55 chr5 28696200 28696401 -174389131 - MIR3 SINE MIR 0 208 12 2042 115 4 4 chr5 28696472 28696780 -174388752 - AluSx SINE Alu 0 312 5 1032 225 0 0 chr5 28697072 28697285 -174388247 - L1PB4 LINE L1 -3 6153 5941 422 330 63 42 chr5 28697690 28697975 -174387557 - L2 LINE L2 -2 3311 3021 21 0 0 0 chr5 28698245 28698266 -174387266 + AT_rich Low_complexity Low_complexity 1 21 0 237 349 69 39 chr5 28698410 28698742 -174386790 - L2 LINE L2 -707 2607 2266 2568 53 0 0 chr5 28698745 28699049 -174386483 - AluY SINE Alu -7 304 1 186 373 45 0 chr5 28699681 28699748 -174385784 - L2 LINE L2 -50 3222 3153 588 314 106 16 chr5 28699944 28700247 -174385285 + L2 LINE L2 1299 1628 -1686 183 100 0 0 chr5 28700247 28700277 -174385255 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 1964 61 389 162 chr5 28700278 28700852 -174384680 + LTR12 LTR ERV1 8 711 -3 207 100 0 0 chr5 28700854 28700884 -174384648 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 2046 127 7 3 chr5 28700885 28701184 -174384348 - AluSg SINE Alu -8 302 3 485 333 102 19 chr5 28701218 28701533 -174383999 + L2 LINE L2 1642 1982 -1332 495 313 142 16 chr5 28701534 28701850 -174383682 + L2 LINE L2 2185 2540 -774 261 0 0 0 chr5 28701853 28701882 -174383650 + (T)n Simple_repeat Simple_repeat 1 29 0 635 270 11 16 chr5 28702028 28702217 -174383315 - MLT1A2 LTR MaLR 0 374 187 315 0 0 0 chr5 28702220 28702255 -174383277 + (TG)n Simple_repeat Simple_repeat 2 36 0 860 199 42 0 chr5 28702264 28702430 -174383102 - MSTB LTR MaLR -15 411 239 242 220 0 0 chr5 28702436 28702486 -174383046 - MSTB-int LTR MaLR -188 1463 1414 1846 145 49 20 chr5 28702486 28702830 -174382702 + L1PB3 LINE L1 5799 6152 -2 6562 218 46 10 chr5 28702884 28704247 -174381285 - MSTB-int LTR MaLR -234 1417 6 1847 237 21 5 chr5 28704258 28704676 -174380856 - MSTB LTR MaLR 0 426 2 228 122 0 0 chr5 28704676 28704717 -174380815 + (TC)n Simple_repeat Simple_repeat 2 42 0 564 236 7 42 chr5 28704798 28704942 -174380590 - MLT1A2 LTR MaLR -226 139 1 190 333 39 13 chr5 28705060 28705138 -174380394 - L2 LINE L2 -12 3301 3222 198 0 0 0 chr5 28705776 28705798 -174379734 + (T)n Simple_repeat Simple_repeat 1 22 0 221 187 55 22 chr5 28706395 28706486 -174379046 + (TA)n Simple_repeat Simple_repeat 2 95 0 2309 144 38 10 chr5 28707964 28708381 -174377151 + L1PB2 LINE L1 5721 6149 -2 2847 213 92 17 chr5 28708388 28708980 -174376552 + L1MC2 LINE L1 4309 4855 -1489 240 35 0 0 chr5 28708980 28709009 -174376523 + (CA)n Simple_repeat Simple_repeat 1 29 0 2847 213 92 17 chr5 28709009 28710299 -174375233 + L1MC2 LINE L1 4855 6335 -9 750 306 128 18 chr5 28710463 28711034 -174374498 + L1ME2 LINE L1 5316 5949 -215 228 111 0 0 chr5 28711572 28711608 -174373924 + (TA)n Simple_repeat Simple_repeat 1 36 0 1757 135 6 45 chr5 28712000 28712311 -174373221 + AluSx SINE Alu 1 299 -13 225 185 0 74 chr5 28713123 28713177 -174372355 + L2 LINE L2 3264 3313 0 1239 131 78 45 chr5 28713909 28714153 -174371379 - MSTC LTR MaLR -12 416 165 2538 101 14 8 chr5 28714156 28714514 -174371018 - THE1C LTR MaLR -15 360 1 785 193 33 0 chr5 28714514 28714660 -174370872 - MSTC LTR MaLR -277 151 1 2191 102 3 3 chr5 28715367 28715662 -174369870 + AluSp SINE Alu 5 299 -14 197 337 41 0 chr5 28715950 28716048 -174369484 + MIR SINE MIR 148 249 -13 21 71 0 0 chr5 28716376 28716418 -174369114 + AT_rich Low_complexity Low_complexity 1 42 0 1573 164 18 11 chr5 28716517 28716820 -174368712 + AluJo SINE Alu 16 312 0 30 45 0 0 chr5 28722735 28722779 -174362753 + AT_rich Low_complexity Low_complexity 1 44 0 2181 110 3 3 chr5 28723151 28723451 -174362081 + AluSg SINE Alu 7 306 -4 930 85 0 248 chr5 28724034 28724079 -174361453 + MSTC LTR MaLR 1 55 -373 495 0 0 0 chr5 28724079 28724134 -174361398 + (TTTTA)n Simple_repeat Simple_repeat 5 59 0 1771 107 69 4 chr5 28724134 28724396 -174361136 - AluSq SINE Alu -32 281 3 930 85 0 248 chr5 28724396 28724472 -174361060 + MSTC LTR MaLR 54 12 -416 2257 70 0 64 chr5 28724472 28724801 -174360731 + AluY SINE Alu 4 311 0 930 85 0 248 chr5 28724801 28724971 -174360561 + MSTC LTR MaLR 11 221 -207 189 0 0 0 chr5 28725038 28725059 -174360473 + (A)n Simple_repeat Simple_repeat 1 21 0 465 303 263 19 chr5 28725576 28726062 -174359470 + L2 LINE L2 2152 2756 -558 207 379 30 23 chr5 28726126 28726258 -174359274 + L2 LINE L2 2768 2900 -414 2432 63 0 0 chr5 28726521 28726820 -174358712 - AluY SINE Alu -12 299 1 302 122 51 31 chr5 28726998 28727096 -174358436 + (TA)n Simple_repeat Simple_repeat 2 101 0 25 0 0 0 chr5 28727643 28727668 -174357864 + AT_rich Low_complexity Low_complexity 1 25 0 532 338 101 0 chr5 28730403 28730631 -174354901 + MIR SINE MIR 6 256 -6 1646 218 48 10 chr5 28730949 28731344 -174354188 - LTR52 LTR ERVL -9 412 3 29 47 0 0 chr5 28731681 28731724 -174353808 + AT_rich Low_complexity Low_complexity 1 43 0 535 261 62 29 chr5 28732733 28732974 -174352558 + HAL1 LINE L1 1778 2026 -481 21 0 0 0 chr5 28733023 28733044 -174352488 + AT_rich Low_complexity Low_complexity 1 21 0 2091 131 26 0 chr5 28733452 28733757 -174351775 - AluSq SINE Alu 0 313 1 1602 156 7 41 chr5 28734362 28734692 -174350840 - AluJo SINE Alu 0 320 1 1559 336 84 37 chr5 28734777 28736059 -174349473 - L2 LINE L2 -7 3306 1978 215 260 10 21 chr5 28736330 28736426 -174349106 + (TTTAA)n Simple_repeat Simple_repeat 3 97 0 203 282 107 61 chr5 28737754 28737885 -174347647 - L3 LINE CR1 -227 1350 1214 22 0 0 0 chr5 28738024 28738046 -174347486 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr5 28738295 28738329 -174347203 + AT_rich Low_complexity Low_complexity 1 34 0 28 79 0 0 chr5 28738591 28738654 -174346878 + AT_rich Low_complexity Low_complexity 1 63 0 285 250 25 0 chr5 28740047 28740127 -174345405 + (TA)n Simple_repeat Simple_repeat 2 83 0 181 327 60 60 chr5 28740281 28740431 -174345101 + L2 LINE L2 3016 3165 -107 486 0 0 0 chr5 28741032 28741086 -174344446 + (TA)n Simple_repeat Simple_repeat 1 54 0 27 0 0 0 chr5 28741211 28741238 -174344294 + AT_rich Low_complexity Low_complexity 1 27 0 528 244 159 20 chr5 28741400 28741601 -174343931 + Charlie4 DNA MER1_type 3 231 -1730 242 282 51 8 chr5 28741693 28741810 -174343722 + Charlie4 DNA MER1_type 1840 1961 0 21 57 0 0 chr5 28742950 28742985 -174342547 + AT_rich Low_complexity Low_complexity 1 35 0 233 316 238 6 chr5 28743164 28743332 -174342200 + MIR SINE MIR 28 234 -28 198 0 0 0 chr5 28744084 28744106 -174341426 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 39 22 0 0 chr5 28744519 28744565 -174340967 + AT_rich Low_complexity Low_complexity 1 46 0 42 48 0 0 chr5 28745440 28745503 -174340029 + AT_rich Low_complexity Low_complexity 1 63 0 338 327 138 52 chr5 28745508 28745587 -174339945 + L1MC4a LINE L1 5264 5335 -2473 1707 231 26 22 chr5 28745587 28746050 -174339482 + MLT1C LTR MaLR 3 467 0 338 327 138 52 chr5 28746050 28746508 -174339024 + L1MC4a LINE L1 5335 5847 -1961 749 238 40 113 chr5 28746640 28747040 -174338492 - MLT1A2 LTR MaLR 0 374 4 1535 260 58 64 chr5 28749191 28749389 -174336143 + MLT1E2 LTR MaLR 1 199 -427 2221 88 5 0 chr5 28749389 28749693 -174335839 + AluSx SINE Alu 3 284 -28 1535 260 58 64 chr5 28749693 28750129 -174335403 + MLT1E2 LTR MaLR 199 626 0 459 294 157 0 chr5 28750272 28750425 -174335107 - MER5A DNA MER1_type -1 188 12 2297 80 0 10 chr5 28750721 28751023 -174334509 - AluY SINE Alu -12 299 1 239 0 0 31 chr5 28751671 28751703 -174333829 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 16706 103 42 75 chr5 28754656 28757961 -174327571 + L1PA8 LINE L1 2895 6170 -2 948 279 64 29 chr5 28757961 28758509 -174327023 + L1M4 LINE L1 3168 3734 -2412 395 309 86 0 chr5 28760179 28760318 -174325214 + MIR SINE MIR 18 168 -94 21 57 0 0 chr5 28762280 28762315 -174323217 + AT_rich Low_complexity Low_complexity 1 35 0 222 218 69 92 chr5 28762538 28762625 -174322907 - MIR SINE MIR -10 252 168 310 316 155 26 chr5 28762754 28762909 -174322623 + MIR SINE MIR 12 186 -76 183 333 0 25 chr5 28763611 28763692 -174321840 - MIR SINE MIR -169 93 15 21 57 0 0 chr5 28764713 28764748 -174320784 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr5 28765360 28765381 -174320151 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr5 28765642 28765680 -174319852 + AT_rich Low_complexity Low_complexity 1 38 0 2319 58 7 7 chr5 28767065 28767360 -174318172 - AluY SINE Alu -16 295 1 35 78 0 0 chr5 28767446 28767523 -174318009 + AT_rich Low_complexity Low_complexity 1 77 0 1038 8 0 0 chr5 28767614 28767733 -174317799 - L1PA2 LINE L1 -1 6154 6036 25 0 0 0 chr5 28768015 28768040 -174317492 + AT_rich Low_complexity Low_complexity 1 25 0 407 19 19 0 chr5 28768290 28768342 -174317190 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 267 393 0 0 chr5 28769111 28769195 -174316337 + L2 LINE L2 3151 3234 -38 230 345 11 0 chr5 28769201 28769288 -174316244 - MIR SINE MIR -2 260 173 195 170 0 0 chr5 28770574 28770621 -174314911 + (TA)n Simple_repeat Simple_repeat 2 48 0 1982 134 36 38 chr5 28770843 28771208 -174314324 + THE1B LTR MaLR 1 364 0 209 254 28 42 chr5 28771259 28771330 -174314202 + MIR3 SINE MIR 91 160 -48 21 36 0 0 chr5 28771356 28771384 -174314148 + AT_rich Low_complexity Low_complexity 1 28 0 324 0 0 0 chr5 28771834 28771870 -174313662 + (TG)n Simple_repeat Simple_repeat 1 36 0 233 356 45 60 chr5 28773120 28773302 -174312230 + MIR SINE MIR 2 191 -54 1319 153 142 24 chr5 28773483 28773737 -174311795 + THE1B LTR MaLR 81 364 0 354 167 15 0 chr5 28773887 28773953 -174311579 + MSTD LTR MaLR 2 68 -360 575 286 6 40 chr5 28773985 28774160 -174311372 + MSTD LTR MaLR 227 395 -1 27 73 0 0 chr5 28774379 28774434 -174311098 + AT_rich Low_complexity Low_complexity 1 55 0 2103 103 10 0 chr5 28774704 28774994 -174310538 + AluSx SINE Alu 1 293 -19 24 0 0 0 chr5 28775924 28775948 -174309584 + AT_rich Low_complexity Low_complexity 1 24 0 3301 213 23 26 chr5 28776172 28777272 -174308260 + L1MB5 LINE L1 4979 6076 -98 1494 152 110 26 chr5 28778500 28778809 -174306723 - MER44D DNA MER2_type -4 605 1 606 129 34 48 chr5 28779226 28779373 -174306159 - L1MA7 LINE L1 -8 6283 6139 536 224 37 0 chr5 28779392 28779526 -174306006 + L1MA7 LINE L1 6005 6143 -148 208 385 73 6 chr5 28779754 28779933 -174305599 + L2 LINE L2 2522 2712 -602 24 77 0 0 chr5 28780079 28780131 -174305401 + AT_rich Low_complexity Low_complexity 1 52 0 193 333 231 6 chr5 28780390 28780546 -174304986 + L2 LINE L2 3031 3221 -92 1099 260 123 31 chr5 28780677 28781058 -174304474 + MLT2B1 LTR ERVL 103 518 -2 16938 156 47 56 chr5 28781103 28783192 -174302340 + L1M1 LINE L1 16 2202 -5363 2970 168 33 9 chr5 28783192 28783764 -174301768 + LTR60 LTR ERV1 1 586 0 16938 156 47 56 chr5 28783764 28785182 -174300350 + L1M1 LINE L1 2202 3632 -3933 3785 233 39 22 chr5 28785216 28786372 -174299160 + L1M1 LINE L1 3608 4782 -2783 295 121 38 17 chr5 28786474 28786551 -174298981 - L1PA8 LINE L1 -188 5966 5884 1919 146 0 0 chr5 28786939 28787250 -174298282 + AluSx SINE Alu 1 311 0 265 321 57 0 chr5 28787793 28787899 -174297633 + LTR16A1 LTR ERVL 174 285 -172 1516 198 29 0 chr5 28788592 28788747 -174296785 - AluJb SINE Alu -26 286 118 221 0 0 33 chr5 28788747 28788777 -174296755 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1516 198 29 0 chr5 28788777 28788899 -174296633 - AluJb SINE Alu -194 118 1 301 322 11 11 chr5 28789205 28789292 -174296240 - L2 LINE L2 -36 3277 3191 1562 183 0 41 chr5 28789354 28789649 -174295883 - AluJo SINE Alu -20 292 10 2036 118 0 0 chr5 28789929 28790208 -174295324 - AluSx SINE Alu -10 302 24 243 309 11 0 chr5 28791009 28791103 -174294429 - L1MC/D LINE L1 -2339 5469 5375 254 125 21 0 chr5 28791556 28791604 -174293928 + (TA)n Simple_repeat Simple_repeat 2 50 0 207 218 69 20 chr5 28791724 28791825 -174293707 + (TTAAA)n Simple_repeat Simple_repeat 5 110 0 851 216 54 62 chr5 28794055 28794296 -174291236 + MER8 DNA MER2_type 1 239 0 2319 89 0 0 chr5 28794512 28794803 -174290729 - AluSg SINE Alu -14 296 6 1930 151 10 10 chr5 28795609 28795920 -174289612 + AluSx SINE Alu 1 311 -1 1571 137 64 6 chr5 28796312 28796461 -174289071 - L1MA9 LINE L1 0 6312 6173 222 37 0 0 chr5 28796461 28796488 -174289044 + (TG)n Simple_repeat Simple_repeat 2 28 0 1571 137 64 6 chr5 28796488 28796651 -174288881 - L1MA9 LINE L1 -139 6173 5982 362 367 29 61 chr5 28797447 28797793 -174287739 + L1ME LINE L1 332 666 -5539 235 353 26 0 chr5 28797894 28798010 -174287522 + L1MC4 LINE L1 7907 8025 -17 1302 165 34 8 chr5 28798088 28798324 -174287208 - AluJb SINE Alu -8 304 63 299 186 43 0 chr5 28798396 28798466 -174287066 - L1MC/D LINE L1 -764 5400 5328 329 295 20 58 chr5 28798587 28798882 -174286650 - L1MC4 LINE L1 -169 7873 7590 293 309 66 7 chr5 28798884 28799036 -174286496 + L1M4 LINE L1 4622 4782 -1364 234 220 0 0 chr5 28799096 28799155 -174286377 + (TA)n Simple_repeat Simple_repeat 2 60 0 1828 296 68 40 chr5 28799579 28801747 -174283785 + L1ME LINE L1 591 2791 -3424 190 382 66 0 chr5 28802511 28802587 -174282945 + L2 LINE L2 3169 3249 -23 243 313 30 30 chr5 28802704 28802835 -174282697 + L1ME LINE L1 5602 5732 -458 1895 174 3 9 chr5 28802846 28803191 -174282341 + MER2 DNA MER2_type 2 344 0 24 32 0 0 chr5 28803295 28803326 -174282206 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr5 28803589 28803610 -174281922 + (CAT)n Simple_repeat Simple_repeat 1 21 0 201 121 0 0 chr5 28803758 28803791 -174281741 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 1938 118 20 13 chr5 28804323 28804629 -174280903 - AluSg SINE Alu 0 310 3 180 0 0 0 chr5 28804746 28804766 -174280766 + (CAA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr5 28807112 28807133 -174278399 + AT_rich Low_complexity Low_complexity 1 21 0 213 94 0 0 chr5 28808734 28808766 -174276766 + (T)n Simple_repeat Simple_repeat 1 32 0 410 101 14 0 chr5 28811137 28811206 -174274326 + (TC)n Simple_repeat Simple_repeat 1 70 0 279 355 0 0 chr5 28811600 28811693 -174273839 - MIR SINE MIR -121 141 49 258 160 0 0 chr5 28811774 28811824 -174273708 + (CAT)n Simple_repeat Simple_repeat 1 50 0 411 294 123 42 chr5 28812565 28812874 -174272658 - L2 LINE L2 -439 2875 2542 381 325 58 31 chr5 28813103 28813294 -174272238 + LTR16A1 LTR ERVL 258 453 -4 310 276 11 0 chr5 28813615 28813702 -174271830 + (TA)n Simple_repeat Simple_repeat 2 89 0 1386 182 0 0 chr5 28813702 28813933 -174271599 - MER1B DNA MER1_type -66 231 1 1414 201 33 16 chr5 28813933 28814237 -174271295 + MLT1A1 LTR MaLR 55 363 -2 2833 228 25 32 chr5 28814237 28814460 -174271072 + MLT1A1-int LTR MaLR 5 228 -1143 2244 88 3 16 chr5 28814460 28814765 -174270767 + AluSp SINE Alu 1 301 -12 2833 228 25 32 chr5 28814765 28815280 -174270252 + MLT1A1-int LTR MaLR 228 752 -619 222 37 0 0 chr5 28815344 28815371 -174270161 + (A)n Simple_repeat Simple_repeat 1 27 0 2045 236 36 25 chr5 28815496 28815971 -174269561 + MLT1A1-int LTR MaLR 1255 1734 -1 1247 237 12 96 chr5 28815975 28816174 -174269358 + MLT1A2 LTR MaLR 4 153 -221 302 0 26 0 chr5 28816174 28816212 -174269320 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1247 237 12 96 chr5 28816212 28816417 -174269115 + MLT1A2 LTR MaLR 153 374 0 25 31 0 0 chr5 28817967 28817999 -174267533 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr5 28818261 28818290 -174267242 + AT_rich Low_complexity Low_complexity 1 29 0 205 226 19 0 chr5 28818295 28818348 -174267184 + (TA)n Simple_repeat Simple_repeat 1 54 0 246 156 0 0 chr5 28818371 28818435 -174267097 + (TA)n Simple_repeat Simple_repeat 2 65 0 195 235 0 0 chr5 28818895 28818946 -174266586 + (TG)n Simple_repeat Simple_repeat 2 52 0 2112 118 3 0 chr5 28819352 28819640 -174265892 - AluSc SINE Alu -17 292 4 442 100 0 0 chr5 28819870 28819930 -174265602 - L1P LINE L1 -900 5246 5187 3694 43 2 4 chr5 28819930 28820389 -174265143 + L1PA4 LINE L1 5695 6155 0 21 36 0 0 chr5 28820535 28820563 -174264969 + AT_rich Low_complexity Low_complexity 1 28 0 2154 113 20 0 chr5 28820610 28820911 -174264621 + AluSc SINE Alu 1 307 -2 184 270 226 0 chr5 28820994 28821109 -174264423 - L2 LINE L2 -62 3251 3111 1058 233 10 24 chr5 28821113 28821409 -174264123 + L1MC3 LINE L1 4728 5019 -1127 295 259 12 0 chr5 28821520 28821605 -174263927 + L1MC3 LINE L1 5026 5111 -1035 8578 204 41 78 chr5 28821612 28823490 -174262042 + L1MC3 LINE L1 5069 7014 -771 297 0 0 0 chr5 28823490 28823523 -174262009 + (TC)n Simple_repeat Simple_repeat 1 33 0 8578 204 41 78 chr5 28823523 28823631 -174261901 + L1MC3 LINE L1 7014 7124 -661 7249 45 3 0 chr5 28823631 28824577 -174260955 + L1PA5 LINE L1 5206 6154 0 8578 204 41 78 chr5 28824577 28824653 -174260879 + L1MC3 LINE L1 7124 7201 -584 1137 217 4 0 chr5 28824653 28824888 -174260644 - MER46A DNA MER2_type 0 236 1 8578 204 41 78 chr5 28824888 28825241 -174260291 + L1MC3 LINE L1 7201 7366 -419 208 0 62 0 chr5 28825241 28825273 -174260259 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8578 204 41 78 chr5 28825273 28825658 -174259874 + L1MC3 LINE L1 7366 7764 -21 293 327 65 93 chr5 28825670 28826207 -174259325 - L2 LINE L2 -188 3125 2606 417 264 37 117 chr5 28826243 28826569 -174258963 - L2 LINE L2 -830 2484 2185 5472 129 4 3 chr5 28826920 28827824 -174257708 + L1PA14 LINE L1 5047 6152 -9 30 0 0 0 chr5 28827824 28827854 -174257678 + AT_rich Low_complexity Low_complexity 1 30 0 737 318 135 21 chr5 28827938 28828375 -174257157 + LTR33 LTR ERVL 31 517 -4 193 255 245 10 chr5 28828459 28828557 -174256975 - L2 LINE L2 -2 3311 3191 931 253 145 22 chr5 28829174 28829589 -174255943 - Charlie4a DNA MER1_type -7 501 36 1808 154 21 0 chr5 28829861 28830146 -174255386 + AluSx SINE Alu 3 293 -19 311 305 91 19 chr5 28830548 28830702 -174254830 - MLT1I LTR MaLR -236 173 9 1085 191 23 27 chr5 28831719 28831975 -174253557 - L1MB1 LINE L1 -18 6150 5896 587 312 67 40 chr5 28832457 28832829 -174252703 - MLT1I LTR MaLR -22 387 6 1303 219 113 24 chr5 28832854 28833279 -174252253 + MLT1C LTR MaLR 3 465 -2 328 206 15 145 chr5 28833453 28833584 -174251948 + MIR SINE MIR 64 177 -85 703 293 10 0 chr5 28833692 28833900 -174251632 + MER2 DNA MER2_type 1 210 -135 25 0 0 0 chr5 28833924 28833949 -174251583 + AT_rich Low_complexity Low_complexity 1 25 0 223 216 137 0 chr5 28834635 28834686 -174250846 - MIR SINE MIR -4 258 201 1283 208 67 31 chr5 28834706 28835066 -174250466 + MER93b LTR ERV1 1 373 0 425 305 123 48 chr5 28835070 28835404 -174250128 + MLT1I LTR MaLR 18 376 -33 692 283 178 28 chr5 28835616 28836083 -174249449 + MER90 LTR ERV1 78 614 0 257 221 0 35 chr5 28836245 28836331 -174249201 + (TA)n Simple_repeat Simple_repeat 1 83 0 21 0 0 0 chr5 28836525 28836546 -174248986 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr5 28837259 28837288 -174248244 + AT_rich Low_complexity Low_complexity 1 29 0 288 306 64 31 chr5 28838976 28839216 -174246316 + MER20B DNA MER1_type 2 270 -513 205 171 0 0 chr5 28839220 28839261 -174246271 + T-rich Low_complexity Low_complexity 4 44 0 273 299 78 59 chr5 28839316 28839520 -174246012 + MER20B DNA MER1_type 309 516 -267 203 254 0 0 chr5 28839954 28840009 -174245523 + (CATATA)n Simple_repeat Simple_repeat 4 58 0 25 31 0 0 chr5 28841701 28841733 -174243799 + AT_rich Low_complexity Low_complexity 1 32 0 30 27 0 0 chr5 28841842 28841879 -174243653 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr5 28842234 28842262 -174243270 + AT_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chr5 28842365 28842392 -174243140 + (CA)n Simple_repeat Simple_repeat 1 27 0 279 317 12 0 chr5 28844679 28844761 -174240771 - MIR3 SINE MIR -25 183 101 1987 130 0 0 chr5 28845414 28845734 -174239798 + AluSx SINE Alu 1 320 0 195 318 229 18 chr5 28846271 28846441 -174239091 - MIR SINE MIR -49 213 8 416 365 131 9 chr5 28847992 28848329 -174237203 + L2 LINE L2 2929 3306 -7 30 59 0 0 chr5 28848340 28848391 -174237141 + AT_rich Low_complexity Low_complexity 1 51 0 322 387 7 0 chr5 28849134 28849284 -174236248 - MIR SINE MIR -79 183 33 190 323 50 30 chr5 28849346 28849445 -174236087 - MIR SINE MIR -65 143 43 1861 155 7 3 chr5 28849741 28850037 -174235495 + AluSx SINE Alu 1 297 -15 205 296 87 56 chr5 28850969 28851165 -174234367 + L3 LINE CR1 1184 1385 -192 196 306 41 0 chr5 28851223 28851272 -174234260 + L2 LINE L2 3242 3292 -21 24 32 0 0 chr5 28853889 28853920 -174231612 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr5 28854022 28854054 -174231478 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr5 28854535 28854557 -174230975 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr5 28854914 28854942 -174230590 + AT_rich Low_complexity Low_complexity 1 28 0 324 70 0 0 chr5 28855110 28855153 -174230379 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr5 28855822 28855843 -174229689 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr5 28856189 28856213 -174229319 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr5 28856225 28856248 -174229284 + (CA)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr5 28856602 28856630 -174228902 + AT_rich Low_complexity Low_complexity 1 28 0 363 72 29 14 chr5 28856667 28856736 -174228796 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 213 39 0 0 chr5 28856811 28856837 -174228695 + (TA)n Simple_repeat Simple_repeat 2 27 0 489 47 0 0 chr5 28857320 28857384 -174228148 + (TG)n Simple_repeat Simple_repeat 2 65 0 21 0 0 0 chr5 28857694 28857715 -174227817 + AT_rich Low_complexity Low_complexity 1 21 0 575 317 65 93 chr5 28863181 28863764 -174221768 + L2 LINE L2 240 806 -2508 22 0 0 0 chr5 28864369 28864391 -174221141 + AT_rich Low_complexity Low_complexity 1 22 0 189 147 0 0 chr5 28864949 28864983 -174220549 + (TAA)n Simple_repeat Simple_repeat 1 34 0 342 356 113 9 chr5 28864990 28865212 -174220320 - MIR SINE MIR -13 249 5 26 30 0 0 chr5 28865767 28865800 -174219732 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr5 28866455 28866487 -174219045 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr5 28866625 28866647 -174218885 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr5 28867268 28867289 -174218243 + AT_rich Low_complexity Low_complexity 1 21 0 2281 39 0 1 chr5 28868436 28868743 -174216789 - L1M LINE L1 -758 5388 5101 5268 8 0 0 chr5 28868743 28869335 -174216197 + L1PA2 LINE L1 5561 6152 -3 303 99 28 14 chr5 28869970 28870041 -174215491 + (TA)n Simple_repeat Simple_repeat 2 73 0 263 316 76 80 chr5 28870748 28870998 -174214534 + L2 LINE L2 3004 3252 -20 300 260 58 31 chr5 28871417 28871572 -174213960 - MIR SINE MIR -57 151 37 298 290 61 30 chr5 28871775 28871906 -174213626 + MIR SINE MIR 68 202 -60 23 0 0 0 chr5 28872562 28872585 -174212947 + AT_rich Low_complexity Low_complexity 1 23 0 554 278 138 60 chr5 28872622 28873732 -174211800 - L1MEc LINE L1 -4098 2298 1102 222 224 15 60 chr5 28875347 28875414 -174210118 + MER5B DNA MER1_type 4 67 -111 2283 98 0 0 chr5 28875701 28875998 -174209534 - AluY SINE Alu -14 297 1 2231 95 0 3 chr5 28876004 28876298 -174209234 - AluSx SINE Alu -15 297 5 208 216 0 0 chr5 28876347 28876384 -174209148 + polypyrimidine Low_complexity Low_complexity 1 37 0 2498 133 38 12 chr5 28876772 28877193 -174208339 + MSTB1 LTR MaLR 1 432 0 211 200 22 0 chr5 28878872 28878917 -174206615 + CT-rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr5 28879115 28879143 -174206389 + AT_rich Low_complexity Low_complexity 1 28 0 767 338 63 43 chr5 28879495 28879892 -174205640 - LTR16C LTR ERVL 0 491 87 627 301 66 8 chr5 28880006 28880262 -174205270 + ERVL-E LTR ERVL 2876 3146 -2618 1422 285 96 91 chr5 28880262 28881797 -174203735 + ERVL-E LTR ERVL 4219 5761 -3 317 328 25 17 chr5 28881870 28881989 -174203543 + MLT2E LTR ERVL 34 153 -475 307 341 97 63 chr5 28883367 28883792 -174201740 + L2 LINE L2 2834 3272 0 707 347 51 13 chr5 28883954 28884329 -174201203 + LTR16B LTR ERVL 76 464 0 907 332 60 54 chr5 28884606 28884978 -174200554 + ERVL LTR ERVL 299 678 -4318 2557 40 0 10 chr5 28884978 28885282 -174200250 + AluY SINE Alu 1 301 -10 907 332 60 54 chr5 28885282 28885598 -174199934 + ERVL LTR ERVL 678 991 -4005 461 280 145 91 chr5 28885603 28885975 -174199557 + ERVL LTR ERVL 3986 4549 -619 431 222 0 0 chr5 28886188 28886278 -174199254 - Charlie5 DNA MER1_type -2522 90 1 24 32 0 0 chr5 28886455 28886486 -174199046 + AT_rich Low_complexity Low_complexity 1 31 0 218 390 0 0 chr5 28886692 28886774 -174198758 + MIR SINE MIR 73 154 -108 24 53 0 0 chr5 28888591 28888629 -174196903 + AT_rich Low_complexity Low_complexity 1 38 0 215 383 11 0 chr5 28888654 28888748 -174196784 - L2 LINE L2 0 3272 3178 2297 236 10 19 chr5 28888783 28889303 -174196229 + MLT2B2 LTR ERVL 1 515 0 638 238 17 65 chr5 28889353 28889550 -174195982 + MER58A DNA MER1_type 1 187 -2233 2206 118 0 0 chr5 28889550 28889856 -174195676 - AluSc SINE Alu -3 306 1 638 238 17 65 chr5 28889856 28889889 -174195643 + MER58A DNA MER1_type 187 220 -4 44 63 0 0 chr5 28890024 28890103 -174195429 + AT_rich Low_complexity Low_complexity 1 79 0 232 143 88 0 chr5 28890182 28890273 -174195259 + (TA)n Simple_repeat Simple_repeat 2 100 0 196 344 31 21 chr5 28890748 28890844 -174194688 - MIR SINE MIR -70 192 96 557 298 22 6 chr5 28892449 28892630 -174192902 - MIR SINE MIR -68 194 11 259 357 71 0 chr5 28892752 28892850 -174192682 - L2 LINE L2 -5 3308 3204 280 322 41 0 chr5 28893682 28893803 -174191729 + MLT1J2 LTR MaLR 59 184 -266 15674 194 57 7 chr5 28893955 28900178 -174185354 + L1PA14 LINE L1 61 6883 -716 2431 97 3 43 chr5 28900178 28900224 -174185308 - THE1A LTR MaLR 0 355 309 2388 82 0 3 chr5 28900224 28900528 -174185004 + AluY SINE Alu 1 303 -8 2431 97 3 43 chr5 28900528 28900851 -174184681 - THE1A LTR MaLR -46 309 1 3741 101 8 0 chr5 28900851 28901365 -174184167 - THE1A-int LTR MaLR 0 1580 1063 1124 175 13 0 chr5 28901355 28901584 -174183948 + L1P LINE L1 5058 5289 -857 * 7608 99 14 2 chr5 28901591 28902639 -174182893 - THE1A-int LTR MaLR -519 1061 1 2334 116 29 0 chr5 28902639 28902984 -174182548 - THE1A LTR MaLR 0 355 1 4948 106 4 0 chr5 28902985 28903693 -174181839 + L1PA14 LINE L1 6880 7590 -9 537 140 0 20 chr5 28906536 28906636 -174178896 + AluY SINE Alu 200 297 -14 190 273 66 58 chr5 28906847 28906968 -174178564 - MIR SINE MIR -81 181 60 2344 48 30 0 chr5 28907366 28907486 -174178046 + AluY SINE Alu 1 116 -195 369 0 0 0 chr5 28907486 28907527 -174178005 + (CA)n Simple_repeat Simple_repeat 2 42 0 2344 48 30 0 chr5 28907527 28907701 -174177831 + AluY SINE Alu 116 304 -7 319 318 27 0 chr5 28910366 28910476 -174175056 - L2 LINE L2 -8 3305 3193 296 295 0 0 chr5 28910536 28910614 -174174918 + (TG)n Simple_repeat Simple_repeat 1 78 0 387 0 0 0 chr5 28910650 28910693 -174174839 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1828 153 0 27 chr5 28910698 28910992 -174174540 - AluSx SINE Alu -26 286 1 29 70 0 0 chr5 28911089 28911146 -174174386 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr5 28911188 28911209 -174174323 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr5 28911385 28911422 -174174110 + AT_rich Low_complexity Low_complexity 1 37 0 195 343 102 9 chr5 28912298 28912406 -174173126 + MIR SINE MIR 66 183 -79 28 48 0 0 chr5 28912532 28912574 -174172958 + AT_rich Low_complexity Low_complexity 1 42 0 439 342 74 0 chr5 28913033 28913223 -174172309 + LTR16A LTR ERVL 146 349 -101 3130 189 42 31 chr5 28913246 28913965 -174171567 + LTR8A LTR ERV1 1 727 0 1278 94 0 21 chr5 28915493 28915506 -174170026 + AluY SINE Alu 121 133 -178 2402 63 0 19 chr5 28915506 28915823 -174169709 + AluY SINE Alu 1 311 0 1278 94 0 21 chr5 28915823 28916001 -174169531 + AluY SINE Alu 133 308 -3 727 352 150 37 chr5 28917243 28917298 -174168234 + L2 LINE L2 1882 1929 -1343 2225 104 0 0 chr5 28917298 28917605 -174167927 - AluSx SINE Alu -5 307 1 727 352 150 37 chr5 28917605 28917629 -174167903 + L2 LINE L2 1929 1949 -1323 2281 196 72 48 chr5 28917629 28918339 -174167193 - LTR8A LTR ERV1 0 727 1 727 352 150 37 chr5 28918339 28918409 -174167123 + L2 LINE L2 1949 2010 -1262 4776 113 7 7 chr5 28918409 28919100 -174166432 - LTR8 LTR ERV1 0 691 1 727 352 150 37 chr5 28919100 28919989 -174165543 + L2 LINE L2 2010 3040 -232 301 285 134 47 chr5 28920243 28920415 -174165117 + MIR3 SINE MIR 19 205 -3 29 28 0 0 chr5 28920438 28920474 -174165058 + AT_rich Low_complexity Low_complexity 1 36 0 307 274 151 28 chr5 28921770 28922022 -174163510 - L1ME4a LINE L1 -126 5995 5713 27 29 0 0 chr5 28922108 28922142 -174163390 + AT_rich Low_complexity Low_complexity 1 34 0 28 29 0 0 chr5 28922506 28922541 -174162991 + AT_rich Low_complexity Low_complexity 1 35 0 2009 165 12 0 chr5 28922924 28923257 -174162275 + MER1B DNA MER1_type 1 337 0 431 313 65 45 chr5 28923260 28923596 -174161936 - L1ME3A LINE L1 -264 5906 5564 29 28 0 0 chr5 28923647 28923683 -174161849 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr5 28924050 28924083 -174161449 + AT_rich Low_complexity Low_complexity 1 33 0 228 312 32 21 chr5 28924477 28924570 -174160962 + MIR SINE MIR 53 146 -116 202 200 0 29 chr5 28925225 28925295 -174160237 + (TA)n Simple_repeat Simple_repeat 1 68 0 234 0 0 0 chr5 28925317 28925343 -174160189 + (CA)n Simple_repeat Simple_repeat 1 26 0 612 0 0 0 chr5 28926736 28926804 -174158728 + (TA)n Simple_repeat Simple_repeat 1 68 0 1119 197 49 116 chr5 28926942 28927349 -174158183 + MLT1B LTR MaLR 11 390 0 237 65 0 0 chr5 28927486 28927517 -174158015 + (TG)n Simple_repeat Simple_repeat 2 32 0 2153 90 6 26 chr5 28927893 28928204 -174157328 + AluY SINE Alu 1 305 -6 1938 118 0 0 chr5 28928221 28928529 -174157003 + AluSq SINE Alu 21 328 0 26 50 0 0 chr5 28929247 28929287 -174156245 + AT_rich Low_complexity Low_complexity 1 40 0 1140 243 35 30 chr5 28929305 28929671 -174155861 - MER93b LTR ERV1 -1 372 5 884 149 7 0 chr5 28929824 28929965 -174155567 - MER50 LTR ERV1 -23 711 570 225 0 0 0 chr5 28980323 28980348 -174105184 + (A)n Simple_repeat Simple_repeat 1 25 0 1886 118 3 3 chr5 28980358 28980647 -174104885 + AluY SINE Alu 1 289 -22 262 385 7 14 chr5 28980967 28981115 -174104417 + MLT2E LTR ERVL 32 178 -450 21 0 0 0 chr5 28982107 28982128 -174103404 + AT_rich Low_complexity Low_complexity 1 21 0 416 172 0 43 chr5 28982177 28982270 -174103262 + MER57-int LTR ERV1 5257 5345 -2192 24 53 0 0 chr5 28982288 28982326 -174103206 + AT_rich Low_complexity Low_complexity 1 38 0 34 55 0 0 chr5 28982372 28982427 -174103105 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr5 28982650 28982674 -174102858 + AT_rich Low_complexity Low_complexity 1 24 0 5272 48 0 0 chr5 28983331 28983975 -174101557 + L1PA5 LINE L1 5503 6146 -8 21 36 0 0 chr5 28983975 28984003 -174101529 + AT_rich Low_complexity Low_complexity 1 28 0 360 64 0 0 chr5 28984268 28984315 -174101217 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 459 293 7 0 chr5 28984848 28984995 -174100537 - MER110 LTR ERV1 -12 479 332 24 0 0 0 chr5 28984995 28985019 -174100513 + AT_rich Low_complexity Low_complexity 1 24 0 692 308 40 7 chr5 28985105 28985381 -174100151 - Charlie2 DNA MER1_type -2155 627 343 431 237 58 53 chr5 28985405 28985612 -174099920 - LTR37B LTR ERV1 -11 457 250 209 133 0 67 chr5 28985663 28985708 -174099824 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 857 239 44 17 chr5 28985891 28986205 -174099327 - AluY SINE Alu 0 322 1 375 226 24 0 chr5 28986322 28986406 -174099126 + L1MD3 LINE L1 6742 6827 -1168 1905 246 82 24 chr5 28986513 28987183 -174098349 + L1MCb LINE L1 435 1143 -4902 2667 245 145 26 chr5 28987185 28987311 -174098221 + L1MD3 LINE L1 5186 4419 -1727 2216 76 13 3 chr5 28987311 28987612 -174097920 + AluY SINE Alu 1 304 -7 2667 245 145 26 chr5 28987612 28988719 -174096813 + L1MD3 LINE L1 4418 5392 -754 2414 204 87 25 chr5 28988714 28989348 -174096184 + L1MC3 LINE L1 7094 7766 -19 * 239 340 102 30 chr5 28989457 28989654 -174095878 + MLT1J2 LTR MaLR 240 450 0 270 207 92 46 chr5 28989830 28989917 -174095615 - L2 LINE L2 -41 3231 3141 2285 98 3 0 chr5 28990187 28990494 -174095038 + AluSg1 SINE Alu 1 308 -1 21 0 0 0 chr5 28991315 28991336 -174094196 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr5 28992602 28992632 -174092900 + AT_rich Low_complexity Low_complexity 1 30 0 673 273 25 50 chr5 28993621 28993863 -174091669 - L1MD3 LINE L1 -1018 6977 6742 304 209 48 19 chr5 28993861 28993966 -174091566 + L1MD3 LINE L1 7880 7987 -8 * 2288 57 43 10 chr5 28993980 28994281 -174091251 + AluY SINE Alu 1 311 0 303 177 0 0 chr5 28994402 28994464 -174091068 + CT-rich Low_complexity Low_complexity 1 62 0 345 24 0 0 chr5 28994898 28994940 -174090592 + (CA)n Simple_repeat Simple_repeat 1 42 0 3225 62 0 0 chr5 28995083 28995499 -174090033 - L1PA5 LINE L1 -8 6146 5731 1384 43 0 0 chr5 28995499 28995663 -174089869 + L1PA5 LINE L1 5574 5737 -417 26 30 0 0 chr5 28996211 28996244 -174089288 + AT_rich Low_complexity Low_complexity 1 33 0 203 301 14 0 chr5 28997223 28997296 -174088236 + (TATG)n Simple_repeat Simple_repeat 2 75 0 26 30 0 0 chr5 28997642 28997675 -174087857 + AT_rich Low_complexity Low_complexity 1 33 0 225 255 0 0 chr5 28999377 28999424 -174086108 + (CA)n Simple_repeat Simple_repeat 2 48 0 241 288 85 17 chr5 29000137 29000255 -174085277 + L3 LINE CR1 839 964 -613 199 374 12 0 chr5 29000522 29000605 -174084927 + L3 LINE CR1 1074 1157 -420 511 314 5 32 chr5 29000928 29001116 -174084416 + HERVL-F LTR ERVL 767 949 -4815 475 270 13 26 chr5 29001398 29001550 -174083982 + HERVL-F LTR ERVL 3100 3249 -2405 814 282 53 8 chr5 29001582 29001848 -174083684 + HERVL-F LTR ERVL 3364 3641 -2123 2574 274 63 20 chr5 29001854 29003101 -174082431 + L1ME1 LINE L1 4861 6160 -6 348 304 27 9 chr5 29003132 29003244 -174082288 + HERVL-F LTR ERVL 4442 4555 -1099 361 340 77 10 chr5 29003366 29003560 -174081972 + HERVL-F LTR ERVL 4745 4951 -813 653 288 49 57 chr5 29003611 29004237 -174081295 + HERVL-F LTR ERVL 4997 5752 -12 765 309 78 45 chr5 29004238 29004790 -174080742 + MLT2F LTR ERVL 46 655 -8 237 62 0 0 chr5 29004970 29005002 -174080530 - L1P LINE L1 -746 5420 5389 774 333 62 6 chr5 29005061 29005397 -174080135 + LTR16B LTR ERVL 110 464 0 319 286 27 81 chr5 29005710 29005737 -174079795 + MLT1G LTR MaLR 221 248 -342 3804 148 3 0 chr5 29005737 29006337 -174079195 + LTR43 LTR ERV1 1 602 0 319 286 27 81 chr5 29006337 29006494 -174079038 + MLT1G LTR MaLR 248 395 -195 467 310 94 19 chr5 29006524 29006737 -174078795 + MLT1G LTR MaLR 346 574 -16 2370 117 16 19 chr5 29006849 29007225 -174078307 - THE1C LTR MaLR 0 375 1 1895 141 3 14 chr5 29007762 29008052 -174077480 + AluSx SINE Alu 5 291 -21 321 159 65 9 chr5 29008124 29008231 -174077301 + (TA)n Simple_repeat Simple_repeat 1 113 0 203 331 124 0 chr5 29008231 29008352 -174077180 - MIR SINE MIR 0 262 127 488 95 27 0 chr5 29010493 29010567 -174074965 + MADE1 DNA Mariner 1 76 -4 1843 129 0 4 chr5 29010993 29011271 -174074261 + AluSq SINE Alu 35 311 -2 1258 295 28 36 chr5 29011480 29011951 -174073581 - MLT1C LTR MaLR 0 467 1 2157 185 18 8 chr5 29012161 29012556 -174072976 - MSTB LTR MaLR -27 399 1 185 347 20 0 chr5 29012699 29012748 -174072784 - MIR SINE MIR -160 102 53 22 0 0 0 chr5 29013655 29013677 -174071855 + AT_rich Low_complexity Low_complexity 1 22 0 414 400 91 9 chr5 29013686 29013916 -174071616 + MER115 DNA AcHobo 1 249 -444 * 749 384 12 21 chr5 29013911 29014447 -174071085 + MER115 DNA AcHobo 89 693 0 260 284 14 0 chr5 29015811 29015885 -174069647 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 184 375 0 0 chr5 29015926 29015990 -174069542 - L3 LINE CR1 -3 1574 1511 2705 13 0 0 chr5 29016601 29016904 -174068628 + AluYa5 SINE Alu 1 303 -8 29 0 0 0 chr5 29017003 29017032 -174068500 + AT_rich Low_complexity Low_complexity 1 29 0 180 224 0 86 chr5 29017573 29017631 -174067901 - MIR3 SINE MIR -44 164 112 325 317 107 4 chr5 29018466 29018747 -174066785 + L1M4 LINE L1 2662 2971 -3175 264 160 0 0 chr5 29018841 29018891 -174066641 + L1ME3A LINE L1 1339 1388 -4996 * 3307 215 34 37 chr5 29018886 29019780 -174065752 + L1MB5 LINE L1 5276 6166 -8 598 278 111 74 chr5 29019882 29020214 -174065318 + L1ME3A LINE L1 3830 4148 -2234 2060 91 14 0 chr5 29020214 29020510 -174065022 + L1PA13 LINE L1 5845 6144 -19 598 278 111 74 chr5 29020510 29021132 -174064400 + L1ME3A LINE L1 4148 4746 -1636 312 27 0 0 chr5 29021132 29021169 -174064363 + (TG)n Simple_repeat Simple_repeat 1 37 0 598 278 111 74 chr5 29021169 29021402 -174064130 + L1ME3A LINE L1 4746 4969 -1413 2261 83 0 13 chr5 29021402 29021702 -174063830 + AluY SINE Alu 1 296 -15 598 278 111 74 chr5 29021702 29021841 -174063691 + L1ME3A LINE L1 4969 5207 -1175 2413 218 31 12 chr5 29021841 29022354 -174063178 + Tigger7 DNA MER2_type 1 523 -1964 450 250 0 0 chr5 29022356 29022444 -174063088 + Tigger7 DNA MER2_type 2400 2487 0 2252 90 0 7 chr5 29022463 29022764 -174062768 + AluY SINE Alu 13 311 0 480 332 40 35 chr5 29022767 29023137 -174062395 + L1ME3A LINE L1 5216 5587 -795 1641 176 46 30 chr5 29023187 29023556 -174061976 + THE1C LTR MaLR 1 375 0 8855 151 30 36 chr5 29023558 29025145 -174060387 + THE1C-int LTR MaLR 3 1579 -1 1247 203 67 41 chr5 29025145 29025483 -174060049 + THE1C LTR MaLR 1 402 -24 263 264 50 8 chr5 29025551 29025672 -174059860 + L1ME3A LINE L1 5691 5816 -590 593 296 40 25 chr5 29025709 29025986 -174059546 + L1ME3A LINE L1 6121 6401 -5 24 53 0 0 chr5 29026116 29026154 -174059378 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr5 29028568 29028593 -174056939 + AT_rich Low_complexity Low_complexity 1 25 0 955 238 84 82 chr5 29029342 29029842 -174055690 - MLT1D LTR MaLR -2 503 3 4011 108 26 8 chr5 29030055 29030678 -174054854 + L1PA10 LINE L1 5523 6156 -12 288 346 23 30 chr5 29031360 29031493 -174054039 - MLT2E LTR ERVL -460 168 37 225 0 0 0 chr5 29031659 29031684 -174053848 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 324 0 0 0 chr5 29031683 29031719 -174053813 + (CA)n Simple_repeat Simple_repeat 1 36 0 8185 229 25 59 chr5 29032255 29035288 -174050244 + L1P5 LINE L1 2567 5491 -660 34 24 0 0 chr5 29035384 29035425 -174050107 + AT_rich Low_complexity Low_complexity 1 41 0 584 341 48 8 chr5 29036750 29037002 -174048530 - MIR SINE MIR 0 262 1 23 54 0 0 chr5 29037353 29037390 -174048142 + AT_rich Low_complexity Low_complexity 1 37 0 305 174 116 0 chr5 29037582 29037668 -174047864 + L1MB3 LINE L1 6081 6176 -7 260 213 25 12 chr5 29037839 29037919 -174047613 + HAL1b LINE L1 1266 1346 -2 22 70 0 0 chr5 29037994 29038037 -174047495 + AT_rich Low_complexity Low_complexity 1 43 0 311 149 0 0 chr5 29038914 29038961 -174046571 + L1MA6 LINE L1 6062 6108 -192 1426 218 0 10 chr5 29039206 29039499 -174046033 + AluJo SINE Alu 2 291 -21 278 344 16 49 chr5 29039552 29039674 -174045858 - L2 LINE L2 -11 3261 3144 252 0 0 0 chr5 29040032 29040060 -174045472 + (TA)n Simple_repeat Simple_repeat 2 29 0 183 24 49 49 chr5 29040219 29040260 -174045272 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 472 134 0 0 chr5 29040264 29040331 -174045201 - AluS SINE Alu -26 286 220 337 276 0 35 chr5 29040492 29040579 -174044953 + L2 LINE L2 3227 3310 -3 1967 120 97 32 chr5 29040659 29041001 -174044531 + THE1B LTR MaLR 1 364 0 208 360 131 48 chr5 29041328 29041994 -174043538 - L2 LINE L2 -978 2336 1616 192 396 19 0 chr5 29042078 29042184 -174043348 - L2 LINE L2 -1840 1474 1367 1533 132 0 0 chr5 29044125 29044365 -174041167 + AluSq SINE Alu 68 307 0 210 143 0 0 chr5 29044464 29044499 -174041033 + (TA)n Simple_repeat Simple_repeat 2 36 0 1144 221 54 27 chr5 29044931 29045266 -174040266 + MER2 DNA MER2_type 1 344 0 1464 187 13 97 chr5 29046767 29047186 -174038346 - MER67C LTR ERV1 -243 271 1 326 275 0 0 chr5 29048639 29048719 -174036813 - MER96 DNA MER1_type? -78 97 18 963 325 32 3 chr5 29048725 29049039 -174036493 - MLT2F LTR ERVL -180 483 161 333 203 0 0 chr5 29049069 29049133 -174036399 - MLT2F LTR ERVL -596 67 4 561 319 86 32 chr5 29050809 29051217 -174034315 - MLT1J1 LTR MaLR -14 432 3 28 61 0 0 chr5 29051309 29051358 -174034174 + AT_rich Low_complexity Low_complexity 1 49 0 597 261 96 43 chr5 29052581 29052816 -174032716 - MER110 LTR ERV1 -7 484 228 2310 92 3 0 chr5 29052816 29053110 -174032422 + AluSc SINE Alu 1 295 -14 597 261 96 43 chr5 29053110 29053177 -174032355 - MER110 LTR ERV1 -263 228 166 894 202 30 20 chr5 29053635 29053833 -174031699 - MER3 DNA MER1_type -5 204 5 23 33 0 0 chr5 29054237 29054267 -174031265 + AT_rich Low_complexity Low_complexity 1 30 0 432 118 0 0 chr5 29054685 29054753 -174030779 + (TG)n Simple_repeat Simple_repeat 2 69 0 245 227 0 45 chr5 29055164 29055230 -174030302 - MIR SINE MIR -5 257 195 792 251 31 1 chr5 29055620 29055857 -174029675 - L1ME2 LINE L1 -259 5905 5712 1854 141 7 7 chr5 29056118 29056409 -174029123 + AluSp SINE Alu 1 291 -22 25 0 0 0 chr5 29056409 29056434 -174029098 + AT_rich Low_complexity Low_complexity 1 25 0 315 0 0 0 chr5 29056658 29056693 -174028839 + (CA)n Simple_repeat Simple_repeat 1 35 0 198 277 50 50 chr5 29056835 29056936 -174028596 + MIR SINE MIR 52 152 -110 376 203 0 0 chr5 29057142 29057221 -174028311 - L1 LINE L1 -1729 4417 4339 4790 171 5 42 chr5 29057246 29059054 -174026478 + L1PA6 LINE L1 4409 6154 0 2532 188 32 9 chr5 29059056 29059610 -174025922 + L1MA4 LINE L1 5724 6290 -10 23 0 0 0 chr5 29059667 29059690 -174025842 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr5 29060321 29060357 -174025175 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr5 29060390 29060418 -174025114 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr5 29060594 29060627 -174024905 + AT_rich Low_complexity Low_complexity 1 33 0 291 302 147 16 chr5 29060864 29060993 -174024539 + MIR SINE MIR 109 254 -8 29 70 0 0 chr5 29061385 29061442 -174024090 + AT_rich Low_complexity Low_complexity 1 57 0 214 261 0 0 chr5 29061511 29061557 -174023975 + (CATA)n Simple_repeat Simple_repeat 3 48 0 225 0 0 0 chr5 29062198 29062223 -174023309 + (A)n Simple_repeat Simple_repeat 1 25 0 2253 50 3 3 chr5 29062232 29062543 -174022989 + AluY SINE Alu 1 311 0 1494 180 64 15 chr5 29063333 29063661 -174021871 + MER2 DNA MER2_type 1 344 0 371 365 72 14 chr5 29065400 29065677 -174019855 + LTR16A LTR ERVL 78 370 -80 962 256 16 20 chr5 29065753 29065999 -174019533 + LTR53 LTR ERVL 189 433 -86 5734 40 0 1 chr5 29066024 29066727 -174018805 - L1PA4 LINE L1 -1073 5073 4372 7354 36 2 0 chr5 29066727 29067804 -174017728 + L1PA4 LINE L1 5070 6149 -6 186 143 0 0 chr5 29067879 29067914 -174017618 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 300 341 22 7 chr5 29067922 29068060 -174017472 - MIR SINE MIR -109 153 14 27 81 0 0 chr5 29068109 29068171 -174017361 + AT_rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chr5 29068420 29068450 -174017082 + AT_rich Low_complexity Low_complexity 1 30 0 544 160 47 7 chr5 29068613 29068763 -174016769 + GA-rich Low_complexity Low_complexity 4 159 0 226 341 155 0 chr5 29069758 29069887 -174015645 - MIR3 SINE MIR -3 205 57 329 315 132 52 chr5 29070327 29070714 -174014818 + L2 LINE L2 2891 3308 -5 1799 215 47 92 chr5 29071085 29071686 -174013846 - MLT1E2 LTR MaLR 0 626 53 831 217 6 0 chr5 29073423 29073589 -174011943 + FAM SINE Alu 1 167 -8 942 187 115 19 chr5 29074961 29075170 -174010362 + MSTA LTR MaLR 197 425 -3 7983 202 18 13 chr5 29075170 29076811 -174008721 + MSTA-int LTR MaLR 2 1651 0 1885 173 96 10 chr5 29076811 29077205 -174008327 + MSTA LTR MaLR 1 428 0 2466 118 14 0 chr5 29077797 29078163 -174007369 + THE1C LTR MaLR 1 371 -4 27 0 0 0 chr5 29078342 29078369 -174007163 + AT_rich Low_complexity Low_complexity 1 27 0 1452 176 45 62 chr5 29079448 29080150 -174005382 - pTR5 LTR ERV1 -513 1480 119 2256 103 0 0 chr5 29082784 29083084 -174002448 - AluY SINE Alu -9 302 3 307 325 96 28 chr5 29083338 29083740 -174001792 + L1MC/D LINE L1 5482 5900 -347 706 69 6 114 chr5 29084070 29084245 -174001287 + AluSp/q SINE Alu 158 313 0 459 0 0 0 chr5 29084247 29084298 -174001234 + (TA)n Simple_repeat Simple_repeat 1 51 0 1179 280 117 42 chr5 29084399 29086411 -173999121 - L1MCc LINE L1 -3405 3536 1207 180 0 0 0 chr5 29086642 29086662 -173998870 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 270 380 9 0 chr5 29086682 29086795 -173998737 - ERVL LTR ERVL -2132 3632 3519 427 364 67 12 chr5 29087056 29087383 -173998149 - ERVL LTR ERVL -2536 3228 2884 744 59 20 0 chr5 29087384 29087543 -173997989 + AluYa5/8 SINE Alu 177 337 0 781 325 21 64 chr5 29087653 29088217 -173997315 - ERVL LTR ERVL -3046 2718 2179 21 0 0 0 chr5 29091500 29091521 -173994011 + AT_rich Low_complexity Low_complexity 1 21 0 2184 82 0 27 chr5 29092612 29092928 -173992604 - AluY SINE Alu 0 308 1 262 212 30 0 chr5 29093116 29093182 -173992350 + (CATA)n Simple_repeat Simple_repeat 1 68 0 1336 178 4 47 chr5 29093246 29093521 -173992011 - AluJo SINE Alu -13 299 37 207 246 0 66 chr5 29093874 29093935 -173991597 - L2 LINE L2 -8 3305 3249 2188 82 7 13 chr5 29094577 29094882 -173990650 - AluY SINE Alu -3 308 6 28 61 0 0 chr5 29096597 29096646 -173988886 + AT_rich Low_complexity Low_complexity 1 49 0 468 286 103 93 chr5 29097097 29097794 -173987738 + HAL1 LINE L1 963 1666 -841 191 149 0 21 chr5 29098149 29098196 -173987336 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 21 0 0 0 chr5 29098240 29098261 -173987271 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr5 29098763 29098793 -173986739 + AT_rich Low_complexity Low_complexity 1 30 0 271 289 52 21 chr5 29099602 29099699 -173985833 - MLT1H LTR MaLR -195 354 255 2456 114 28 14 chr5 29099700 29100059 -173985473 - THE1B LTR MaLR 0 364 1 269 337 125 19 chr5 29100145 29100409 -173985123 - L2 LINE L2 -759 2555 2264 1834 133 0 14 chr5 29100767 29101099 -173984433 - AluSx SINE Alu 0 338 11 183 308 0 87 chr5 29101363 29101467 -173984065 + MIR SINE MIR 80 174 -88 267 258 0 32 chr5 29102372 29102465 -173983067 + (TA)n Simple_repeat Simple_repeat 1 90 0 511 158 21 95 chr5 29102648 29102894 -173982638 + MER51A LTR ERV1 1 162 -215 * 1797 139 53 10 chr5 29102887 29103189 -173982343 + MER51B LTR ERV1 63 377 0 1678 170 22 19 chr5 29103641 29103958 -173981574 + MER1A DNA MER1_type 1 318 -211 673 118 0 20 chr5 29103958 29104060 -173981472 - MER4A LTR ERV1 0 664 565 * 805 212 110 57 chr5 29104057 29104321 -173981211 - LTR21A LTR ERV1 -16 489 212 578 190 0 0 chr5 29104489 29104589 -173980943 - MER4B LTR ERV1 -96 514 415 2322 61 0 3 chr5 29104592 29104886 -173980646 + AluY SINE Alu 4 296 -15 482 305 37 11 chr5 29104958 29105145 -173980387 + L1ME LINE L1 5515 5706 -458 334 118 0 0 chr5 29105155 29105232 -173980300 + AluJ/FRAM SINE Alu 232 308 0 248 175 0 0 chr5 29105232 29105272 -173980260 - MER4A LTR ERV1 -188 476 437 500 137 7 38 chr5 29105289 29105435 -173980097 - MER4A LTR ERV1 -203 461 262 531 144 21 10 chr5 29105436 29105533 -173979999 - MER4A LTR ERV1 -566 98 1 1323 138 24 0 chr5 29105533 29105743 -173979789 + MER1A DNA MER1_type 315 529 0 2201 81 0 7 chr5 29105872 29106169 -173979363 + AluY SINE Alu 16 310 -1 22 0 0 0 chr5 29106376 29106398 -173979134 + AT_rich Low_complexity Low_complexity 1 22 0 1009 172 37 5 chr5 29106508 29106723 -173978809 - L1MB3 LINE L1 -3 6180 5959 196 303 45 0 chr5 29106814 29106880 -173978652 + L2 LINE L2 2290 2358 -956 1557 212 5 61 chr5 29106990 29107400 -173978132 + MLT1B LTR MaLR 4 390 0 371 314 8 17 chr5 29107784 29107902 -173977630 - MER5A DNA MER1_type -30 159 43 773 257 87 30 chr5 29109025 29109360 -173976172 - MLT1A1 LTR MaLR -4 361 8 428 239 62 9 chr5 29109972 29110085 -173975447 + MER51D LTR ERV1 463 581 -76 21 36 0 0 chr5 29110225 29110253 -173975279 + AT_rich Low_complexity Low_complexity 1 28 0 30 59 0 0 chr5 29110457 29110508 -173975024 + AT_rich Low_complexity Low_complexity 1 51 0 373 329 55 20 chr5 29111118 29111264 -173974268 - MLT1K LTR MaLR -342 246 96 236 128 0 21 chr5 29111376 29111423 -173974109 + (TA)n Simple_repeat Simple_repeat 1 46 0 1693 219 3 16 chr5 29112431 29112801 -173972731 + MLT1A1 LTR MaLR 1 365 0 186 397 23 8 chr5 29112838 29112969 -173972563 + MIR SINE MIR 109 241 -21 263 232 0 29 chr5 29113075 29113144 -173972388 + MLT1H LTR MaLR 96 162 -387 401 286 71 24 chr5 29113468 29113636 -173971896 + Charlie8 DNA MER1_type 62 237 -2180 383 98 16 0 chr5 29113734 29113795 -173971737 + (TA)n Simple_repeat Simple_repeat 2 63 0 207 370 143 25 chr5 29113993 29114112 -173971420 - L2 LINE L2 -11 3261 3129 330 304 87 72 chr5 29114224 29114333 -173971199 - L2 LINE L2 -497 2817 2711 180 0 0 0 chr5 29114333 29114353 -173971179 + (TG)n Simple_repeat Simple_repeat 1 20 0 330 304 87 72 chr5 29114353 29114519 -173971013 - L2 LINE L2 -603 2711 2538 1649 225 11 3 chr5 29115731 29116091 -173969441 + MLT1A1 LTR MaLR 1 363 -2 22 35 0 0 chr5 29117035 29117064 -173968468 + AT_rich Low_complexity Low_complexity 1 29 0 181 386 50 10 chr5 29117089 29117190 -173968342 + L2 LINE L2 3164 3268 -4 615 187 8 8 chr5 29117938 29118061 -173967471 + FLAM_A SINE Alu 1 123 -10 229 313 40 40 chr5 29119420 29119519 -173966013 - MIR SINE MIR -87 121 23 23 0 0 0 chr5 29120604 29120627 -173964905 + AT_rich Low_complexity Low_complexity 1 23 0 243 260 20 0 chr5 29120838 29120938 -173964594 + (TATAA)n Simple_repeat Simple_repeat 2 103 0 308 329 106 59 chr5 29121634 29122038 -173963494 + L1M4 LINE L1 3540 3962 -2184 233 307 85 20 chr5 29122081 29122234 -173963298 + L1M4 LINE L1 4030 4192 -1954 466 338 52 54 chr5 29122354 29122857 -173962675 + L1M4 LINE L1 4332 4833 -1313 584 271 109 57 chr5 29122923 29123307 -173962225 + L1MC2 LINE L1 28 431 -5995 578 239 24 6 chr5 29123413 29123580 -173961952 + L1MC2 LINE L1 5538 5707 -2358 3804 187 54 67 chr5 29123601 29124565 -173960967 + L1MCa LINE L1 47 997 -5429 1107 220 68 114 chr5 29124565 29124960 -173960572 - MSTD LTR MaLR 0 396 20 1478 157 111 98 chr5 29124968 29125447 -173960085 + L1MCa LINE L1 998 1482 -4944 * 2219 223 74 39 chr5 29125444 29125595 -173959937 + L1MC2 LINE L1 5693 5837 -787 1815 167 39 25 chr5 29125595 29125954 -173959578 + THE1B LTR MaLR 1 364 0 11339 95 9 2 chr5 29125954 29127523 -173958009 + THE1B-int LTR MaLR 1 1580 0 2069 148 39 20 chr5 29127523 29127880 -173957652 + THE1B LTR MaLR 1 364 0 2219 223 74 39 chr5 29127880 29128438 -173957094 + L1MC2 LINE L1 5836 6429 -195 209 238 63 0 chr5 29128695 29128758 -173956774 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 1006 297 95 48 chr5 29128831 29129966 -173955566 + L1ME2 LINE L1 1171 2252 -4174 2792 173 23 17 chr5 29129966 29130487 -173955045 - MER1A DNA MER1_type -3 524 1 1006 297 95 48 chr5 29130487 29131345 -173954187 + L1ME2 LINE L1 2252 3420 -3006 423 231 103 0 chr5 29131349 29131466 -173954066 - MLT1H1 LTR MaLR 0 555 427 509 383 17 14 chr5 29131669 29132014 -173953518 - LTR16A LTR ERVL 0 450 105 1690 258 99 21 chr5 29132112 29132839 -173952693 + L1ME2 LINE L1 5542 6324 -120 266 194 14 0 chr5 29132859 29132931 -173952601 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 398 244 119 42 chr5 29133164 29133204 -173952328 + L1MC5 LINE L1 7709 7744 -217 1487 201 3 33 chr5 29133204 29133508 -173952024 - AluJb SINE Alu -17 295 1 398 244 119 42 chr5 29133508 29133660 -173951872 + L1MC5 LINE L1 7744 7916 -45 670 243 58 40 chr5 29135115 29135336 -173950196 + MER20 DNA MER1_type 1 219 0 372 298 32 25 chr5 29135377 29135535 -173949997 + MIR SINE MIR 101 259 -3 324 48 0 0 chr5 29135614 29135656 -173949876 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 294 302 9 9 chr5 29136196 29136312 -173949220 + L1MCc LINE L1 82 197 -6226 1096 274 80 34 chr5 29136638 29137265 -173948267 + L1M4 LINE L1 4654 5309 -837 226 267 78 33 chr5 29137852 29137942 -173947590 + MLT1I LTR MaLR 73 166 -243 1028 236 65 96 chr5 29139684 29139735 -173945797 - MLT2B1 LTR ERVL 0 520 469 482 0 17 0 chr5 29139735 29139793 -173945739 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 1028 236 65 96 chr5 29139793 29140018 -173945514 - MLT2B1 LTR ERVL -51 469 239 195 42 0 0 chr5 29140018 29140042 -173945490 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1028 236 65 96 chr5 29140042 29140298 -173945234 - MLT2B1 LTR ERVL -281 239 3 310 295 27 9 chr5 29141245 29141357 -173944175 - MLT1J2 LTR MaLR -281 169 56 200 286 20 20 chr5 29141923 29142021 -173943511 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 39 0 0 0 chr5 29142158 29142197 -173943335 + AT_rich Low_complexity Low_complexity 1 39 0 27 49 0 0 chr5 29142339 29142380 -173943152 + AT_rich Low_complexity Low_complexity 1 41 0 2713 179 45 70 chr5 29142543 29143230 -173942302 - L1MA10 LINE L1 -14 6320 5651 1488 227 28 6 chr5 29143230 29143587 -173941945 + MLT1A1 LTR MaLR 1 365 0 357 260 68 20 chr5 29143599 29143745 -173941787 + L1 LINE L1 4950 5102 -1044 243 300 106 76 chr5 29143748 29144171 -173941361 - HsTC2a DNA Tc2 -279 465 30 22 0 0 0 chr5 29144342 29144364 -173941168 + AT_rich Low_complexity Low_complexity 1 22 0 1989 131 3 13 chr5 29144627 29144939 -173940593 + AluSx SINE Alu 4 312 0 354 23 0 0 chr5 29145704 29145747 -173939785 + (TG)n Simple_repeat Simple_repeat 2 44 0 26 93 0 0 chr5 29146455 29146530 -173939002 + AT_rich Low_complexity Low_complexity 1 75 0 1295 199 6 67 chr5 29198178 29198494 -173887038 + AluJo SINE Alu 1 297 -15 214 254 7 148 chr5 29198686 29198828 -173886704 - L2 LINE L2 -32 3281 3160 21 0 0 0 chr5 29198966 29198987 -173886545 + AT_rich Low_complexity Low_complexity 1 21 0 36 0 0 0 chr5 29199960 29199996 -173885536 + AT_rich Low_complexity Low_complexity 1 36 0 189 74 0 0 chr5 29202492 29202519 -173883013 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 312 231 109 0 chr5 29203651 29203747 -173881785 - MLT1I LTR MaLR -5 434 310 400 311 47 31 chr5 29203850 29204043 -173881489 - MLT1J2 LTR MaLR -254 196 1 341 197 13 26 chr5 29204306 29204382 -173881150 + L1ME2 LINE L1 5972 6046 -118 24 32 0 0 chr5 29204550 29204581 -173880951 + AT_rich Low_complexity Low_complexity 1 31 0 1809 171 59 35 chr5 29204962 29205384 -173880148 - MSTB1 LTR MaLR 0 432 1 411 73 0 0 chr5 29206320 29206375 -173879157 + (TG)n Simple_repeat Simple_repeat 2 56 0 315 0 0 0 chr5 29207405 29207440 -173878092 + (TG)n Simple_repeat Simple_repeat 2 36 0 323 273 73 53 chr5 29207590 29208050 -173877482 + L1M4 LINE L1 4310 4792 -1354 29 0 0 0 chr5 29208647 29208676 -173876856 + AT_rich Low_complexity Low_complexity 1 29 0 221 333 117 0 chr5 29208691 29208802 -173876730 + MIR SINE MIR 48 171 -91 2104 131 230 2 chr5 29209136 29209532 -173876000 + LTR12 LTR ERV1 2 487 -227 2181 199 75 140 chr5 29209676 29210587 -173874945 - MER21B LTR ERV1 0 902 71 359 138 0 0 chr5 29210685 29210743 -173874789 - MER21A LTR ERV1 -861 70 13 22 0 0 0 chr5 29211170 29211192 -173874340 + AT_rich Low_complexity Low_complexity 1 22 0 8427 120 17 8 chr5 29211222 29212492 -173873040 - HSMAR1 DNA Mariner -5 1282 1 21 0 0 0 chr5 29212522 29212543 -173872989 + AT_rich Low_complexity Low_complexity 1 21 0 21 95 0 0 chr5 29214841 29214904 -173870628 + AT_rich Low_complexity Low_complexity 1 63 0 42 65 0 0 chr5 29215133 29215210 -173870322 + AT_rich Low_complexity Low_complexity 1 77 0 24 32 0 0 chr5 29215744 29215775 -173869757 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr5 29216007 29216042 -173869490 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr5 29217045 29217069 -173868463 + AT_rich Low_complexity Low_complexity 1 24 0 1372 88 0 21 chr5 29217362 29217554 -173867978 - AluSg/x SINE Alu -17 295 108 317 230 47 20 chr5 29217824 29217972 -173867560 + L1ME LINE L1 945 1096 -5109 233 250 0 0 chr5 29217979 29218035 -173867497 + L1ME LINE L1 2312 2367 -4029 230 191 21 0 chr5 29218137 29218184 -173867348 + L1ME LINE L1 1161 1208 -4997 2152 184 22 5 chr5 29218323 29218737 -173866795 + MER61C LTR ERV1 14 434 0 763 196 24 100 chr5 29218737 29218987 -173866545 + MER61C-int LTR ERV1 2 232 -4985 * 26891 137 37 28 chr5 29218964 29223791 -173861741 + MER61C-int LTR ERV1 343 5213 -4 2223 181 35 6 chr5 29223791 29224222 -173861310 + MER61C LTR ERV1 6 434 0 393 291 108 21 chr5 29224222 29224656 -173860876 + L1ME LINE L1 1096 1569 -4511 333 323 51 15 chr5 29224630 29224825 -173860707 + L1ME LINE L1 2110 2311 -3769 * 6679 28 0 0 chr5 29224827 29225640 -173859892 + L1PA3 LINE L1 5355 6167 0 780 255 144 23 chr5 29225640 29226076 -173859456 + L1ME LINE L1 2353 2841 -3239 365 304 49 0 chr5 29226077 29226179 -173859353 + L2 LINE L2 3191 3297 -16 2147 113 7 7 chr5 29227169 29227479 -173858053 - AluSg SINE Alu 0 310 1 181 250 0 0 chr5 29227551 29227591 -173857941 - L2 LINE L2 -1 3312 3273 203 176 0 0 chr5 29228012 29228046 -173857486 + (TG)n Simple_repeat Simple_repeat 1 34 0 384 240 118 36 chr5 29228046 29228267 -173857265 - Charlie4 DNA MER1_type -20 1941 1703 439 330 54 10 chr5 29228759 29228962 -173856570 - MIR SINE MIR -26 236 25 216 97 0 0 chr5 29229455 29229486 -173856046 + (TA)n Simple_repeat Simple_repeat 2 32 0 22 56 0 0 chr5 29229654 29229690 -173855842 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr5 29230685 29230707 -173854825 + AT_rich Low_complexity Low_complexity 1 22 0 1084 110 0 0 chr5 29230831 29230986 -173854546 - AluSp/q SINE Alu 0 313 159 198 349 105 0 chr5 29232234 29232386 -173853146 - L2 LINE L2 -961 2353 2186 1526 158 26 8 chr5 29232625 29232890 -173852642 - AluSx SINE Alu -4 308 39 186 355 53 26 chr5 29232948 29233137 -173852395 + L2 LINE L2 2660 2853 -461 299 287 23 0 chr5 29233394 29233481 -173852051 + GA-rich Low_complexity Low_complexity 3 91 0 21 0 0 0 chr5 29233921 29233942 -173851590 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr5 29234661 29234682 -173850850 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr5 29235135 29235173 -173850359 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr5 29235190 29235218 -173850314 + AT_rich Low_complexity Low_complexity 1 28 0 31 44 0 0 chr5 29235265 29235310 -173850222 + AT_rich Low_complexity Low_complexity 1 45 0 221 263 0 154 chr5 29236191 29236450 -173849082 + L2 LINE L2 1570 1788 -1526 238 175 0 0 chr5 29236459 29236499 -173849033 + Alu SINE Alu 3 42 -266 466 99 0 0 chr5 29236499 29236570 -173848962 + Alu SINE Alu 232 302 -10 284 329 183 30 chr5 29236676 29237108 -173848424 + L2 LINE L2 1854 2351 -963 1083 358 64 17 chr5 29237553 29238308 -173847224 - HERV16 LTR ERVL -2213 2783 1994 262 242 30 40 chr5 29238317 29238416 -173847116 - MLT1I LTR MaLR -41 368 271 454 317 77 59 chr5 29239295 29239633 -173845899 + LTR33 LTR ERVL 3 346 -175 2561 53 0 0 chr5 29239646 29239950 -173845582 - AluY SINE Alu -7 304 1 22 70 0 0 chr5 29240219 29240262 -173845270 + AT_rich Low_complexity Low_complexity 1 43 0 2147 97 23 3 chr5 29242185 29242485 -173843047 - AluY SINE Alu -5 306 1 206 373 51 0 chr5 29242573 29242691 -173842841 + MIR SINE MIR 118 241 -21 370 230 7 12 chr5 29242835 29242980 -173842552 + MER20 DNA MER1_type 1 219 0 335 310 17 9 chr5 29244815 29244931 -173840601 - L2 LINE L2 -5 3308 3192 26 0 0 0 chr5 29245228 29245254 -173840278 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr5 29246388 29246427 -173839105 + AT_rich Low_complexity Low_complexity 1 39 0 242 236 0 0 chr5 29246517 29246572 -173838960 + L1MC4 LINE L1 6649 6703 -1339 * 256 250 21 73 chr5 29246570 29246666 -173838866 - L1MC4 LINE L1 -1339 6703 6613 195 42 0 0 chr5 29246760 29246784 -173838748 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2418 52 0 13 chr5 29246786 29247091 -173838441 - AluY SINE Alu -10 301 1 231 211 0 0 chr5 29247684 29247736 -173837796 - L1MA9 LINE L1 -13 6299 6248 1694 157 60 43 chr5 29248216 29248585 -173836947 - THE1C LTR MaLR 0 375 1 8955 138 17 38 chr5 29248585 29250195 -173835337 - THE1C-int LTR MaLR 0 1580 4 1195 181 102 42 chr5 29250198 29250552 -173834980 - THE1C LTR MaLR 0 375 1 1648 181 20 16 chr5 29251394 29251697 -173833835 + AluJb SINE Alu 3 306 -6 328 291 9 27 chr5 29252333 29252443 -173833089 + MIR SINE MIR 64 171 -91 1769 117 0 0 chr5 29252627 29252883 -173832649 + AluSx SINE Alu 38 293 -19 32 67 0 0 chr5 29253194 29253254 -173832278 + AT_rich Low_complexity Low_complexity 1 60 0 2307 91 0 0 chr5 29254238 29254535 -173830997 - AluSc SINE Alu -6 303 7 27 87 0 0 chr5 29254828 29254897 -173830635 + AT_rich Low_complexity Low_complexity 1 69 0 1886 122 21 10 chr5 29254965 29255253 -173830279 - AluSx SINE Alu -13 299 9 214 354 51 36 chr5 29256052 29256247 -173829285 + MIR SINE MIR 57 254 -8 2235 164 16 47 chr5 29256328 29256588 -173828944 + L1MA9 LINE L1 5837 6077 -235 715 161 39 15 chr5 29256588 29256718 -173828814 - FLAM_C SINE Alu 0 133 1 2235 164 16 47 chr5 29256718 29256944 -173828588 + L1MA9 LINE L1 6077 6308 -4 524 233 69 31 chr5 29257955 29258114 -173827418 - L1MB7 LINE L1 -7 6177 6013 2590 235 52 25 chr5 29258124 29258163 -173827369 + L1M4 LINE L1 3415 3451 -2695 2390 94 0 0 chr5 29258163 29258472 -173827060 + AluSc SINE Alu 1 309 0 2590 235 52 25 chr5 29258472 29259219 -173826313 + L1M4 LINE L1 3451 4222 -1924 2471 201 23 23 chr5 29259234 29259766 -173825766 + Tigger1 DNA MER2_type 24 555 -1863 1217 277 16 8 chr5 29259766 29260152 -173825380 + L1M4 LINE L1 4696 5084 -1062 2821 85 20 15 chr5 29260405 29260807 -173824725 - MLT2A1 LTR ERVL -40 404 1 41896 93 6 2 chr5 29260807 29266435 -173819097 - HERVL-A1 LTR ERVL 0 5654 4 2802 100 20 35 chr5 29266438 29266478 -173819054 - MLT2A1 LTR ERVL 0 444 405 486 0 0 0 chr5 29266478 29266532 -173819000 + (TA)n Simple_repeat Simple_repeat 2 55 0 2802 100 20 35 chr5 29266532 29266942 -173818590 - MLT2A1 LTR ERVL -39 405 1 680 221 97 66 chr5 29266942 29267231 -173818301 + MLT1D LTR MaLR 152 449 -56 313 276 73 104 chr5 29267830 29268022 -173817510 + L1MC5 LINE L1 7746 7931 -30 2740 7 0 10 chr5 29268450 29268758 -173816774 + AluYa5 SINE Alu 1 305 -6 1121 234 0 58 chr5 29269874 29270233 -173815299 - MER52A LTR ERV1 -34 1721 1384 1584 71 0 0 chr5 29270255 29270451 -173815081 + AluSg/x SINE Alu 113 308 -2 314 287 49 15 chr5 29270640 29270790 -173814742 + MLT1F1 LTR MaLR 417 559 -8 308 224 15 22 chr5 29270877 29271011 -173814521 + (TTA)n Simple_repeat Simple_repeat 2 134 0 264 229 0 0 chr5 29271011 29271059 -173814473 - MLT1B LTR MaLR -336 54 7 * 568 246 0 0 chr5 29271056 29271178 -173814354 + MLT1B LTR MaLR 21 142 -248 886 213 91 15 chr5 29271179 29271442 -173814090 + MLT1B LTR MaLR 67 349 -41 477 0 0 0 chr5 29271981 29272034 -173813498 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 222 37 0 0 chr5 29272034 29272061 -173813471 + (GA)n Simple_repeat Simple_repeat 2 28 0 290 286 97 62 chr5 29272981 29273240 -173812292 + L2 LINE L2 1806 2073 -1241 329 300 30 0 chr5 29273264 29273364 -173812168 - LTR40a LTR ERVL -413 106 4 596 220 135 10 chr5 29274049 29274249 -173811283 - L1MC2 LINE L1 -98 6246 6022 * 6938 252 27 63 chr5 29274240 29275599 -173809933 - L1PA12 LINE L1 -2001 5583 4176 225 0 0 0 chr5 29275599 29275624 -173809908 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 6938 252 27 63 chr5 29275624 29277824 -173807708 - L1PA12 LINE L1 -3408 4176 2176 588 382 0 13 chr5 29277816 29278041 -173807491 - L1PA12 LINE L1 -6564 1010 789 * 375 194 101 23 chr5 29278245 29278374 -173807158 - L1MCb LINE L1 -3214 3350 3212 2080 248 42 15 chr5 29278410 29278866 -173806666 - MER70B LTR ERVL -108 470 3 1512 266 28 10 chr5 29278870 29279371 -173806161 - L1MCb LINE L1 -3350 3214 2705 832 284 30 85 chr5 29279419 29279951 -173805581 - L1MCb LINE L1 -5540 505 3 223 338 92 44 chr5 29280192 29280420 -173805112 - MIR SINE MIR -6 256 18 182 116 23 0 chr5 29281392 29281435 -173804097 + (TG)n Simple_repeat Simple_repeat 1 44 0 21 36 0 0 chr5 29282607 29282635 -173802897 + AT_rich Low_complexity Low_complexity 1 28 0 32 43 0 0 chr5 29282705 29282751 -173802781 + AT_rich Low_complexity Low_complexity 1 46 0 527 219 22 44 chr5 29283219 29283356 -173802176 - LTR5 LTR ERVK -835 134 1 1363 240 116 24 chr5 29283356 29284388 -173801144 + L1MC3 LINE L1 1871 3001 -3425 1598 181 5 32 chr5 29284490 29284871 -173800661 - L1PA16 LINE L1 -592 5574 5204 2913 152 44 67 chr5 29284874 29285468 -173800064 + L1PA16 LINE L1 5581 6160 -6 1224 266 49 18 chr5 29285474 29285921 -173799611 + L1MC3 LINE L1 4670 5130 -1296 1042 200 46 72 chr5 29285934 29286279 -173799253 + L1MC3 LINE L1 5966 6301 -1764 313 264 123 43 chr5 29286303 29286466 -173799066 - L1M4 LINE L1 -3157 2989 2814 4800 209 35 63 chr5 29286506 29287886 -173797646 + L1MC3 LINE L1 6327 7668 -397 711 221 22 50 chr5 29287887 29288109 -173797423 + L1MC3 LINE L1 7819 8034 -31 1687 147 13 121 chr5 29288111 29288498 -173797034 - MER7A DNA MER2_type -1 345 3 23 0 0 0 chr5 29288837 29288860 -173796672 + AT_rich Low_complexity Low_complexity 1 23 0 2554 115 3 3 chr5 29289052 29289426 -173796106 + THE1C LTR MaLR 2 375 0 9592 146 28 5 chr5 29289426 29290970 -173794562 + THE1C-int LTR MaLR 1 1580 0 2465 99 16 37 chr5 29290970 29291352 -173794180 + THE1C LTR MaLR 1 374 -1 261 128 43 0 chr5 29292261 29292308 -173793224 + L1MC4 LINE L1 6652 6700 -1342 26 50 0 0 chr5 29292468 29292508 -173793024 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr5 29292738 29292767 -173792765 + AT_rich Low_complexity Low_complexity 1 29 0 3625 150 0 2 chr5 29293274 29293861 -173791671 - L1PA13 LINE L1 -11 6152 5567 5122 149 14 5 chr5 29293868 29295404 -173790128 + L1PA15 LINE L1 4619 6160 -5 5355 260 36 45 chr5 29295404 29298773 -173786759 - L1PA13 LINE L1 -2943 3854 1 321 125 0 18 chr5 29298781 29298837 -173786695 + L1MB7 LINE L1 6111 6165 -19 30 0 0 0 chr5 29299160 29299190 -173786342 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr5 29299327 29299365 -173786167 + AT_rich Low_complexity Low_complexity 1 38 0 1650 208 19 19 chr5 29300588 29300953 -173784579 - MLT1A1 LTR MaLR 0 365 1 29 0 0 0 chr5 29301301 29301330 -173784202 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr5 29302082 29302124 -173783408 + AT_rich Low_complexity Low_complexity 1 42 0 1317 268 105 22 chr5 29303201 29303937 -173781595 - L1M4 LINE L1 -2260 3886 3090 23 0 0 0 chr5 29303976 29303999 -173781533 + AT_rich Low_complexity Low_complexity 1 23 0 1598 147 14 11 chr5 29304006 29304291 -173781241 - L1MA6 LINE L1 -5 6295 6010 2507 107 80 5 chr5 29304291 29304682 -173780850 + L1PA11 LINE L1 5743 6174 0 1392 266 49 4 chr5 29304690 29305156 -173780376 + L1MB8 LINE L1 3569 4055 -2091 * 1728 226 68 3 chr5 29305145 29305672 -173779860 + L1MB8 LINE L1 5513 6117 -67 358 261 139 35 chr5 29305682 29305797 -173779735 + MER5A DNA MER1_type 60 186 -3 333 310 0 120 chr5 29306040 29306240 -173779292 - MER5B DNA MER1_type -1 177 2 257 254 197 0 chr5 29306548 29306619 -173778913 - L2 LINE L2 -30 3242 3158 325 291 156 7 chr5 29307014 29307155 -173778377 - MER5B DNA MER1_type -16 162 1 213 259 51 134 chr5 29307652 29307830 -173777702 - L2 LINE L2 -10 3303 3112 1955 117 7 3 chr5 29307830 29308143 -173777389 + AluSp SINE Alu 1 314 0 213 259 51 134 chr5 29308143 29308234 -173777298 - L2 LINE L2 -201 3112 3064 2102 101 14 3 chr5 29308234 29308531 -173777001 + AluSc SINE Alu 1 300 -9 213 259 51 134 chr5 29308531 29308595 -173776937 - L2 LINE L2 -249 3064 2996 623 278 55 3 chr5 29309480 29309771 -173775761 + Charlie4a DNA MER1_type 77 382 -126 31 44 0 0 chr5 29310090 29310135 -173775397 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr5 29310766 29310801 -173774731 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr5 29311003 29311034 -173774498 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr5 29311292 29311329 -173774203 + AT_rich Low_complexity Low_complexity 1 37 0 680 285 61 20 chr5 29311755 29312001 -173773531 + MIR SINE MIR 7 262 0 21 82 0 0 chr5 29312807 29312856 -173772676 + AT_rich Low_complexity Low_complexity 1 49 0 24 53 0 0 chr5 29314890 29314928 -173770604 + AT_rich Low_complexity Low_complexity 1 38 0 888 192 158 0 chr5 29315960 29316163 -173769369 - MER46A DNA MER2_type -1 235 1 219 242 0 0 chr5 29316295 29316357 -173769175 + (TA)n Simple_repeat Simple_repeat 1 62 0 1439 265 25 92 chr5 29316664 29317295 -173768237 + MLT1E LTR MaLR 1 589 -4 776 165 88 29 chr5 29317561 29317823 -173767709 + MER44D DNA MER2_type 2 517 -92 1135 184 43 4 chr5 29317826 29318060 -173767472 - Tigger2a DNA MER2_type 0 444 202 534 175 62 0 chr5 29318061 29318158 -173767374 + AluSq/x SINE Alu 3 105 -208 951 212 13 42 chr5 29318216 29318452 -173767080 - Tigger2a DNA MER2_type -205 229 1 382 237 66 0 chr5 29318452 29318527 -173767005 + MER44D DNA MER2_type 523 602 -7 240 86 0 0 chr5 29318646 29318681 -173766851 + (TC)n Simple_repeat Simple_repeat 1 35 0 24 85 0 0 chr5 29318897 29318956 -173766576 + AT_rich Low_complexity Low_complexity 1 59 0 207 94 38 19 chr5 29318958 29319011 -173766521 + A-rich Low_complexity Low_complexity 3 56 0 26 0 0 0 chr5 29319011 29319037 -173766495 + AT_rich Low_complexity Low_complexity 1 26 0 636 244 2 5 chr5 29319037 29319229 -173766303 + L1MB5 LINE L1 5660 5849 -325 21 36 0 0 chr5 29319231 29319259 -173766273 + AT_rich Low_complexity Low_complexity 1 28 0 4032 189 33 9 chr5 29319453 29320836 -173764696 + L1PB4 LINE L1 4376 5791 -365 422 202 16 33 chr5 29320836 29321019 -173764513 + (TA)n Simple_repeat Simple_repeat 1 180 0 1731 182 62 0 chr5 29321062 29321403 -173764129 + L1PB4 LINE L1 5782 6143 -13 28 71 0 0 chr5 29321436 29321492 -173764040 + AT_rich Low_complexity Low_complexity 1 56 0 2245 60 0 18 chr5 29321846 29322130 -173763402 + AluY SINE Alu 1 279 -32 360 0 0 0 chr5 29322130 29322170 -173763362 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1187 211 19 0 chr5 29322184 29322444 -173763088 + L1MA9 LINE L1 6010 6274 -38 28 0 0 0 chr5 29322444 29322472 -173763060 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr5 29323127 29323149 -173762383 + AT_rich Low_complexity Low_complexity 1 22 0 315 336 17 9 chr5 29324069 29324185 -173761347 + MIR3 SINE MIR 87 203 -5 26 0 0 0 chr5 29324696 29324722 -173760810 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr5 29324788 29324809 -173760723 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr5 29325375 29325404 -173760128 + (TA)n Simple_repeat Simple_repeat 2 30 0 717 312 66 45 chr5 29325905 29326479 -173759053 - ERVL LTR ERVL -102 5662 5077 1864 102 18 21 chr5 29326492 29326775 -173758757 + AluSx SINE Alu 29 310 -2 1005 293 43 29 chr5 29326822 29327538 -173757994 - ERVL LTR ERVL -932 4832 4053 709 261 118 62 chr5 29328821 29329227 -173756305 + MLT1E2 LTR MaLR 21 449 -177 12475 237 34 17 chr5 29330955 29333502 -173752030 - L1PA16 LINE L1 -9 7595 5092 1575 105 18 0 chr5 29333502 29333751 -173751781 - AluY SINE Alu 0 315 63 12475 237 34 17 chr5 29333751 29334053 -173751479 - L1PA16 LINE L1 -2512 5092 4797 341 22 22 0 chr5 29334053 29334099 -173751433 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 12475 237 34 17 chr5 29334099 29336518 -173749014 - L1PA16 LINE L1 -2807 4797 2197 296 320 0 0 chr5 29336765 29336862 -173748670 - L1PA16 LINE L1 -5400 2181 2085 574 330 33 48 chr5 29336916 29337456 -173748076 - L1PA16 LINE L1 -6167 1407 876 284 222 69 0 chr5 29337570 29337642 -173747890 - MIR SINE MIR -110 152 76 24 96 0 0 chr5 29337970 29338043 -173747489 + AT_rich Low_complexity Low_complexity 1 73 0 22 70 0 0 chr5 29338888 29338931 -173746601 + AT_rich Low_complexity Low_complexity 1 43 0 1648 138 78 67 chr5 29342343 29342714 -173742818 - THE1C LTR MaLR 0 375 1 1483 301 87 15 chr5 29342864 29343448 -173742084 - MLT1E2 LTR MaLR 0 626 1 281 257 134 34 chr5 29343989 29344168 -173741364 - MIR SINE MIR 0 262 66 356 268 71 42 chr5 29344900 29345068 -173740464 - MLT1J2 LTR MaLR 0 450 278 405 301 98 20 chr5 29345417 29345570 -173739962 + Charlie1 DNA MER1_type 7 171 -2590 305 314 17 0 chr5 29345603 29345721 -173739811 + Charlie1 DNA MER1_type 2637 2756 -5 21 89 0 0 chr5 29345775 29345831 -173739701 + AT_rich Low_complexity Low_complexity 1 56 0 3946 164 25 31 chr5 29346035 29346839 -173738693 - Tigger3b DNA MER2_type 0 1231 433 1791 174 81 0 chr5 29346818 29347151 -173738381 - Tigger3b DNA MER2_type -869 362 3 * 215 215 28 9 chr5 29347163 29347270 -173738262 + (TA)n Simple_repeat Simple_repeat 1 109 0 1587 299 119 27 chr5 29347271 29349795 -173735737 + L1ME2 LINE L1 1306 4019 -2196 734 258 219 7 chr5 29349862 29350319 -173735213 + L1ME2 LINE L1 4864 5417 -798 305 283 22 0 chr5 29350333 29350425 -173735107 + L1ME2 LINE L1 5450 5543 -704 452 261 23 28 chr5 29350482 29350658 -173734874 + L1ME2 LINE L1 5905 6079 -154 213 94 0 0 chr5 29350828 29350860 -173734672 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2919 176 96 20 chr5 29351084 29351744 -173733788 - MER67C LTR ERV1 0 710 1 378 269 10 10 chr5 29351888 29351992 -173733540 + L1MC2 LINE L1 6239 6342 -2 11364 138 15 19 chr5 29452371 29454255 -173631277 - L1P LINE L1 -4260 1886 11 32 42 0 42 chr5 29454525 29454597 -173630935 + AT_rich Low_complexity Low_complexity 1 69 0 985 240 62 120 chr5 29454602 29454876 -173630656 - L1ME3A LINE L1 -56 6114 5826 1814 148 140 8 chr5 29454876 29455254 -173630278 + MSTA LTR MaLR 1 428 0 985 240 62 120 chr5 29455254 29455870 -173629662 - L1ME3A LINE L1 -344 5826 5261 1050 205 19 0 chr5 29456031 29456236 -173629296 + MER2 DNA MER2_type 1 209 -136 333 334 125 26 chr5 29456354 29456665 -173628867 - L1ME3A LINE L1 -1046 5100 4759 25 31 0 0 chr5 29456705 29456737 -173628795 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr5 29457251 29457277 -173628255 + AT_rich Low_complexity Low_complexity 1 26 0 356 318 48 26 chr5 29457753 29457942 -173627590 + MIR SINE MIR 70 262 0 284 287 0 0 chr5 29460048 29460135 -173625397 + (TA)n Simple_repeat Simple_repeat 1 87 0 629 279 76 20 chr5 29460851 29460987 -173624545 - L1ME3A LINE L1 -78 6092 5965 1646 241 23 43 chr5 29460987 29461502 -173624030 + MLT1D LTR MaLR 1 505 0 629 279 76 20 chr5 29461502 29461666 -173623866 - L1ME3A LINE L1 -205 5965 5775 2678 145 40 36 chr5 29461713 29462230 -173623302 + MLT2A1 LTR ERVL 1 515 0 40142 95 13 3 chr5 29462230 29467836 -173617696 + HERVL-A1-A1 LTR ERVL 1 5654 0 3189 66 50 2 chr5 29467836 29468260 -173617272 + MLT2A1 LTR ERVL 1 444 0 263 247 58 11 chr5 29468406 29468520 -173617012 - L1ME3A LINE L1 -565 5599 5481 282 200 47 24 chr5 29468542 29468627 -173616905 - L1ME3A LINE L1 -667 5497 5411 555 220 86 42 chr5 29468653 29468962 -173616570 - L1ME3A LINE L1 -743 5403 5133 2345 85 13 3 chr5 29469643 29469950 -173615582 - AluSg SINE Alu 0 310 1 1075 163 15 0 chr5 29470144 29470340 -173615192 + L1MB1 LINE L1 5970 6168 0 31 26 0 0 chr5 29470430 29470468 -173615064 + AT_rich Low_complexity Low_complexity 1 38 0 230 300 12 0 chr5 29470960 29471040 -173614492 - MER103 DNA DNA -55 111 31 2493 204 63 87 chr5 29471135 29471856 -173613676 - L1MB8 LINE L1 -6 6172 5474 5307 16 13 3 chr5 29471856 29472489 -173613043 - L1PA2 LINE L1 -1 6154 5516 2493 204 63 87 chr5 29472489 29472652 -173612880 - L1MB8 LINE L1 -704 5474 5309 717 185 6 25 chr5 29472672 29472834 -173612698 - L1MB3 LINE L1 -3 6180 6022 6950 174 75 114 chr5 29472837 29473077 -173612455 - L1M4c LINE L1 -4222 2162 1914 798 163 0 15 chr5 29473077 29473212 -173612320 + FLAM_C SINE Alu 1 133 0 6950 174 75 114 chr5 29473212 29474249 -173611283 - L1M4c LINE L1 -4470 1914 867 692 156 52 22 chr5 29474249 29474384 -173611148 - AluJb SINE Alu -173 139 1 6950 174 75 114 chr5 29474384 29475201 -173610331 - L1M4c LINE L1 -5517 867 20 1199 255 24 14 chr5 29476202 29476571 -173608961 + L1MB8 LINE L1 5746 6118 -60 1687 162 73 20 chr5 29476632 29476733 -173608799 - L1MA8 LINE L1 -5 6286 6192 258 81 0 0 chr5 29476733 29476770 -173608762 + (TG)n Simple_repeat Simple_repeat 2 38 0 1687 162 73 20 chr5 29476770 29477445 -173608087 - L1MA8 LINE L1 -99 6192 5377 807 189 37 98 chr5 29477628 29477872 -173607660 - MLT1-int LTR MaLR -723 648 420 281 228 0 0 chr5 29478135 29478192 -173607340 + HERVL68 LTR ERVL 2724 2780 -257 2704 19 0 0 chr5 29478445 29478754 -173606778 + AluYa5 SINE Alu 1 309 -2 253 410 6 6 chr5 29478840 29479001 -173606531 - L2 LINE L2 -557 2757 2597 1515 134 0 0 chr5 29479553 29479769 -173605763 - AluSg/x SINE Alu -13 297 82 27 49 0 0 chr5 29480011 29480052 -173605480 + AT_rich Low_complexity Low_complexity 1 41 0 983 251 43 0 chr5 29480586 29480865 -173604667 - MER63 DNA MER1_type -11 1051 761 1656 174 10 84 chr5 29480882 29481285 -173604247 + MLT1B LTR MaLR 1 373 -17 2279 174 20 3 chr5 29481286 29481676 -173603856 - MSTA LTR MaLR 0 428 32 387 237 61 18 chr5 29481715 29481829 -173603703 - MER63 DNA MER1_type -91 745 1 1508 206 44 12 chr5 29482051 29482391 -173603141 - L1MA4 LINE L1 -21 6279 5929 1329 188 51 8 chr5 29482391 29482647 -173602885 + L1M1 LINE L1 5504 5770 -530 2575 33 3 0 chr5 29482653 29482956 -173602576 - AluY SINE Alu -7 304 1 1061 347 71 40 chr5 29484030 29484984 -173600548 + L2 LINE L2 2308 3300 -13 202 349 65 61 chr5 29485290 29485519 -173600013 - MIR SINE MIR -9 253 24 194 81 27 0 chr5 29485777 29485814 -173599718 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 303 283 22 0 chr5 29486587 29486679 -173598853 + L1M LINE L1 5295 5388 -774 248 371 21 10 chr5 29486982 29487079 -173598453 - MER91A DNA MER1_type -85 111 14 22 35 0 0 chr5 29488096 29488125 -173597407 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr5 29488330 29488364 -173597168 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr5 29489521 29489551 -173595981 + AT_rich Low_complexity Low_complexity 1 30 0 288 228 43 33 chr5 29490740 29490832 -173594700 - MER5A DNA MER1_type -93 96 4 23 33 0 0 chr5 29491516 29491546 -173593986 + AT_rich Low_complexity Low_complexity 1 30 0 516 272 143 0 chr5 29492479 29492626 -173592906 - MIR SINE MIR -93 169 2 251 195 24 24 chr5 29492949 29493031 -173592501 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 331 304 77 43 chr5 29493473 29493604 -173591928 - L1MEd LINE L1 -4750 1560 1435 2503 48 0 0 chr5 29493604 29493899 -173591633 - AluY SINE Alu -16 295 1 331 304 77 43 chr5 29493899 29494276 -173591256 - L1MEd LINE L1 -4875 1435 988 23 0 0 0 chr5 29495048 29495071 -173590461 + AT_rich Low_complexity Low_complexity 1 23 0 32 43 0 0 chr5 29495235 29495281 -173590251 + AT_rich Low_complexity Low_complexity 1 46 0 2053 125 0 0 chr5 29496646 29496927 -173588605 - AluSg SINE Alu -16 294 14 713 331 39 16 chr5 29500199 29500507 -173585025 - LTR16A1 LTR ERVL 0 457 143 189 276 103 52 chr5 29500733 29500849 -173584683 - L2 LINE L2 -1882 1432 1311 234 91 0 0 chr5 29500873 29500906 -173584626 + (CATA)n Simple_repeat Simple_repeat 2 34 0 189 0 0 0 chr5 29500907 29500928 -173584604 + (GA)n Simple_repeat Simple_repeat 2 22 0 958 231 0 42 chr5 29502152 29502416 -173583116 + L1MD1 LINE L1 5773 6025 -217 24 32 0 0 chr5 29504381 29504412 -173581120 + AT_rich Low_complexity Low_complexity 1 31 0 1891 139 147 21 chr5 29504573 29504953 -173580579 - MSTA LTR MaLR 0 428 1 4231 221 29 50 chr5 29504968 29505698 -173579834 - L1MC3 LINE L1 -189 7596 6901 183 80 0 0 chr5 29505698 29505723 -173579809 + (TG)n Simple_repeat Simple_repeat 2 26 0 4231 221 29 50 chr5 29505723 29506206 -173579326 - L1MC3 LINE L1 -884 6901 6409 288 116 0 0 chr5 29506206 29506249 -173579283 - MADE1 DNA Mariner 0 80 38 27 29 0 0 chr5 29506593 29506627 -173578905 + AT_rich Low_complexity Low_complexity 1 34 0 25 51 0 0 chr5 29506664 29506703 -173578829 + AT_rich Low_complexity Low_complexity 1 39 0 2263 61 3 10 chr5 29506824 29507117 -173578415 + AluY SINE Alu 17 307 -4 38 39 0 0 chr5 29507826 29507878 -173577654 + AT_rich Low_complexity Low_complexity 1 52 0 252 268 236 16 chr5 29508038 29508161 -173577371 + MIR SINE MIR 13 162 -100 1359 117 5 0 chr5 29508966 29509183 -173576349 - AluSg/x SINE Alu 0 303 86 21 36 0 0 chr5 29509466 29509494 -173576038 + AT_rich Low_complexity Low_complexity 1 28 0 1926 267 30 25 chr5 29509756 29510314 -173575218 - MLT1F1 LTR MaLR 0 567 7 279 287 41 107 chr5 29510321 29510638 -173574894 - MLT1F1-int LTR MaLR 0 1371 1076 412 263 168 36 chr5 29510732 29511006 -173574526 + L1ME1 LINE L1 4996 5305 -841 1552 106 38 4 chr5 29511009 29511246 -173574286 + AluSx SINE Alu 52 296 -16 981 284 48 44 chr5 29511405 29511863 -173573669 + L1ME1 LINE L1 5704 6163 -3 27 49 0 0 chr5 29512570 29512611 -173572921 + AT_rich Low_complexity Low_complexity 1 41 0 21 57 0 0 chr5 29513507 29513542 -173571990 + AT_rich Low_complexity Low_complexity 1 35 0 697 236 67 84 chr5 29513763 29514047 -173571485 + MER21B LTR ERV1 492 770 -93 2128 143 0 0 chr5 29514848 29515155 -173570377 - AluSx SINE Alu -5 307 1 1669 100 155 7 chr5 29515296 29515567 -173569965 + AluSx SINE Alu 1 311 -1 237 232 0 18 chr5 29518110 29518166 -173567366 + (CA)n Simple_repeat Simple_repeat 2 56 0 713 242 86 17 chr5 29518610 29518917 -173566615 - L1ME2 LINE L1 -19 6145 5815 416 211 13 122 chr5 29518923 29519079 -173566453 - L1MA9 LINE L1 0 6291 6153 240 35 0 0 chr5 29519246 29519275 -173566257 + (CA)n Simple_repeat Simple_repeat 2 30 0 556 297 128 23 chr5 29519313 29519741 -173565791 - L1ME2 LINE L1 -363 5801 5329 474 283 102 44 chr5 29519791 29520272 -173565260 - L1ME2 LINE L1 -891 5255 4747 * 1299 7 0 0 chr5 29520268 29520416 -173565116 - L1PA3 LINE L1 -1445 4701 4554 7481 36 0 0 chr5 29520416 29521862 -173563670 + L1PA3 LINE L1 4707 6152 -3 655 224 77 77 chr5 29521882 29522257 -173563275 - L1ME2 LINE L1 -1387 4759 4385 23 0 0 0 chr5 29522264 29522287 -173563245 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr5 29522366 29522389 -173563143 + AT_rich Low_complexity Low_complexity 1 23 0 428 321 158 3 chr5 29522686 29523022 -173562510 - L2 LINE L2 -1665 1649 1262 5728 120 5 2 chr5 29523030 29523897 -173561635 - L1PA13 LINE L1 -2 6161 5293 * 17571 220 27 9 chr5 29523887 29529134 -173556398 - L1P4 LINE L1 -645 6174 781 332 43 22 0 chr5 29529134 29529180 -173556352 + (CA)n Simple_repeat Simple_repeat 1 47 0 17571 220 27 9 chr5 29529180 29529910 -173555622 - L1P4 LINE L1 -6038 781 66 3861 97 20 46 chr5 29529917 29530523 -173555009 + LTR14B LTR ERVK 19 608 0 317 211 0 0 chr5 29530523 29530580 -173554952 - L1P4 LINE L1 -6730 57 1 4780 258 49 55 chr5 29531091 29531990 -173553542 + L1M4b LINE L1 33 936 -5923 480 61 0 0 chr5 29531990 29532056 -173553476 + L1PA6 LINE L1 6086 6151 -3 4780 258 49 55 chr5 29532056 29532230 -173553302 + L1M4b LINE L1 936 1110 -5749 180 0 0 0 chr5 29532230 29532250 -173553282 + (GA)n Simple_repeat Simple_repeat 1 20 0 4780 258 49 55 chr5 29532250 29532797 -173552735 + L1M4b LINE L1 1110 1644 -5215 683 243 28 0 chr5 29532798 29532979 -173552553 + L1M4b LINE L1 3395 3580 -3377 391 229 90 0 chr5 29532978 29533100 -173552432 - L1MB7 LINE L1 -242 5932 5800 * 230 169 85 0 chr5 29533193 29533252 -173552280 - L1MDb LINE L1 -4296 2350 2287 1451 222 63 122 chr5 29533274 29533677 -173551855 - L1MDb LINE L1 -4481 2165 1740 340 98 0 0 chr5 29533677 29533728 -173551804 - Alu SINE Alu 0 301 251 2095 83 0 21 chr5 29533728 29534016 -173551516 - AluSx SINE Alu -30 282 1 1451 222 63 122 chr5 29534016 29534387 -173551145 - L1MDb LINE L1 -4904 1742 1422 * 1708 234 56 63 chr5 29534382 29534972 -173550560 - L1MDb LINE L1 -5414 1128 543 1076 257 96 43 chr5 29535002 29535441 -173550091 - L1MDb LINE L1 -6071 471 10 2983 221 40 47 chr5 29535452 29535577 -173549955 + L1MB8 LINE L1 4848 4972 -1206 1999 101 22 4 chr5 29535577 29535854 -173549678 + AluSx SINE Alu 8 289 -23 2983 221 40 47 chr5 29535854 29536539 -173548993 + L1MB8 LINE L1 4972 5648 -530 1474 184 52 52 chr5 29536539 29536903 -173548629 + THE1B LTR MaLR 1 364 0 2983 221 40 47 chr5 29536903 29537419 -173548113 + L1MB8 LINE L1 5648 6166 -12 229 389 48 31 chr5 29537489 29537718 -173547814 + L2 LINE L2 2932 3164 -149 206 292 14 14 chr5 29537764 29537836 -173547696 + (TA)n Simple_repeat Simple_repeat 2 73 0 771 262 183 37 chr5 29539721 29540103 -173545429 - MLT1D LTR MaLR 0 505 68 363 313 90 30 chr5 29540502 29540668 -173544864 - MLT1C LTR MaLR 0 467 292 747 164 105 33 chr5 29540670 29540822 -173544710 + THE1B LTR MaLR 202 364 0 7210 288 28 34 chr5 29540822 29544005 -173541527 - L1PA12 LINE L1 -1590 5994 2828 2814 184 114 10 chr5 29544006 29544611 -173540921 + L1PA16 LINE L1 5495 6162 -4 304 287 65 70 chr5 29546134 29546364 -173539168 + Charlie8 DNA MER1_type 36 264 -2153 25 51 0 0 chr5 29547115 29547154 -173538378 + AT_rich Low_complexity Low_complexity 1 39 0 1038 229 67 80 chr5 29547687 29548062 -173537470 + MLT1A2 LTR MaLR 5 374 0 55 40 0 0 chr5 29549934 29550010 -173535522 + AT_rich Low_complexity Low_complexity 1 76 0 334 279 130 19 chr5 29550201 29550362 -173535170 + MIR SINE MIR 78 256 -6 1866 193 20 11 chr5 29550512 29550870 -173534662 + MLT1A1 LTR MaLR 1 361 -4 1231 182 12 43 chr5 29552229 29552482 -173533050 + AluJo SINE Alu 1 245 -67 2115 164 37 28 chr5 29552482 29553027 -173532505 - MLT2A2 LTR ERVL 0 554 1 272 179 18 0 chr5 29553027 29553083 -173532449 + FAM SINE Alu 116 172 -3 1215 269 82 65 chr5 29553778 29554336 -173531196 - MLT1E LTR MaLR -19 574 7 256 0 0 71 chr5 29555711 29555753 -173529779 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 628 264 140 13 chr5 29556273 29556508 -173529024 + MER45C DNA AcHobo 688 952 -1 1933 157 34 10 chr5 29556875 29557390 -173528142 + MLT2A2 LTR ERVL 1 554 0 21 57 0 0 chr5 29557856 29557891 -173527641 + AT_rich Low_complexity Low_complexity 1 35 0 384 346 39 0 chr5 29558242 29558369 -173527163 + MIR3 SINE MIR 65 196 -12 232 286 157 0 chr5 29558534 29558674 -173526858 + L1M4 LINE L1 3394 3555 -2591 1593 202 16 3 chr5 29558708 29559025 -173526507 - L1PA16 LINE L1 -17 6149 5829 5092 249 20 17 chr5 29559025 29560597 -173524935 - L1 LINE L1 -1819 4327 2752 3863 88 26 27 chr5 29560604 29561187 -173524345 - L1PA7 LINE L1 -8 6146 5565 1235 164 14 0 chr5 29561329 29561548 -173523984 - HERVH LTR ERV1 -4352 3361 3140 * 11051 138 6 34 chr5 29561527 29563456 -173522076 - HERVH LTR ERV1 -4718 2995 1122 8223 116 23 8 chr5 29563674 29565021 -173520511 + L1P LINE L1 2392 3758 -2388 510 281 79 6 chr5 29565022 29565200 -173520332 - L1 LINE L1 -3371 2775 2585 258 32 0 0 chr5 29565673 29565704 -173519828 + (TA)n Simple_repeat Simple_repeat 2 32 0 378 121 0 0 chr5 29566647 29566713 -173518819 + (GA)n Simple_repeat Simple_repeat 1 66 0 3309 153 50 31 chr5 29567246 29567926 -173517606 + L1MA7 LINE L1 5594 6286 -5 612 183 30 18 chr5 29568347 29568516 -173517016 - L1MC3 LINE L1 -2 7783 7613 468 313 99 45 chr5 29569679 29569992 -173515540 - LTR33 LTR ERVL -132 389 60 312 313 13 20 chr5 29570238 29570388 -173515144 - MERVL LTR ERVL -152 5333 5185 3165 184 46 79 chr5 29570761 29571134 -173514398 + L1MA5 LINE L1 5458 5842 -458 1853 56 0 0 chr5 29571134 29571364 -173514168 + L1PA5 LINE L1 5921 6154 0 3165 184 46 79 chr5 29571364 29571862 -173513670 + L1MA5 LINE L1 5842 6300 0 22 0 0 0 chr5 29572290 29572312 -173513220 + AT_rich Low_complexity Low_complexity 1 22 0 236 283 28 57 chr5 29572482 29572588 -173512944 + MIR SINE MIR 34 136 -126 656 298 41 24 chr5 29572641 29572957 -173512575 - MLT1A1 LTR MaLR -3 362 1 1017 164 35 0 chr5 29573111 29573282 -173512250 + AluJo SINE Alu 120 296 -16 21 0 0 0 chr5 29574952 29574973 -173510559 + AT_rich Low_complexity Low_complexity 1 21 0 2289 67 7 14 chr5 29575405 29575702 -173509830 + AluY SINE Alu 1 295 -16 23 78 0 0 chr5 29576208 29576259 -173509273 + AT_rich Low_complexity Low_complexity 1 51 0 27 0 0 0 chr5 29576977 29577004 -173508528 + AT_rich Low_complexity Low_complexity 1 27 0 22 80 0 0 chr5 29577804 29577854 -173507678 + AT_rich Low_complexity Low_complexity 1 50 0 436 16 33 0 chr5 29578057 29578118 -173507414 + (TA)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr5 29578681 29578702 -173506830 + AT_rich Low_complexity Low_complexity 1 21 0 2266 121 8 5 chr5 29578962 29579333 -173506199 - L1P LINE L1 -3861 2285 1914 * 6511 92 1 4 chr5 29579329 29580243 -173505289 + L1P LINE L1 3758 4668 -1478 7356 42 0 1 chr5 29580243 29581968 -173503564 + L1PA3 LINE L1 4429 6152 -3 680 225 78 75 chr5 29581988 29582362 -173503170 - L1M4 LINE L1 -1387 4759 4385 23 0 0 0 chr5 29582369 29582392 -173503140 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr5 29582471 29582494 -173503038 + AT_rich Low_complexity Low_complexity 1 23 0 420 324 158 3 chr5 29582791 29583127 -173502405 - L2 LINE L2 -1665 1649 1262 5728 120 5 2 chr5 29583135 29584002 -173501530 - L1PA13 LINE L1 -2 6161 5293 * 6120 185 18 1 chr5 29583992 29585395 -173500137 - L1P4 LINE L1 -645 5838 4417 219 235 143 31 chr5 29587097 29587195 -173498337 + L2 LINE L2 3163 3271 -1 24 32 0 0 chr5 29587954 29587985 -173497547 + AT_rich Low_complexity Low_complexity 1 31 0 25 75 0 0 chr5 29589067 29589120 -173496412 + AT_rich Low_complexity Low_complexity 1 53 0 946 229 30 120 chr5 29589645 29590046 -173495486 - MLT1A1 LTR MaLR 0 365 1 589 256 176 24 chr5 29590408 29590748 -173494784 - MSTD LTR MaLR -4 392 1 899 256 5 19 chr5 29591499 29591710 -173493822 + MER58A DNA MER1_type 1 208 -16 619 229 0 0 chr5 29592196 29592318 -173493214 + AluJo/FLAM SINE Alu 1 122 -190 1647 100 11 38 chr5 29592318 29592579 -173492953 - AluY SINE Alu -14 297 44 29 0 0 0 chr5 29592886 29592915 -173492617 + AT_rich Low_complexity Low_complexity 1 29 0 2123 136 16 35 chr5 29593351 29593720 -173491812 - THE1B LTR MaLR 0 364 3 22 0 0 0 chr5 29594089 29594111 -173491421 + AT_rich Low_complexity Low_complexity 1 22 0 2487 132 0 19 chr5 29595873 29596291 -173489241 - L1P4 LINE L1 -3755 2706 2297 1183 174 0 5 chr5 29596296 29596497 -173489035 - L1P4 LINE L1 -6252 209 10 374 179 155 0 chr5 29596541 29596625 -173488907 + MER92A LTR ERV1 1 97 -315 282 257 0 0 chr5 29596806 29596880 -173488652 + MER92A LTR ERV1 339 412 0 180 0 0 0 chr5 29597181 29597201 -173488331 + (AAATG)n Simple_repeat Simple_repeat 4 23 0 341 252 111 22 chr5 29598921 29599056 -173486476 - MER110 LTR ERV1 -3 465 359 1957 143 26 52 chr5 29599117 29599502 -173486030 - THE1C LTR MaLR 0 375 1 2630 91 6 0 chr5 29599869 29600222 -173485310 - THE1A LTR MaLR 0 355 1 10805 106 5 23 chr5 29600224 29601814 -173483718 - THE1A-int LTR MaLR -19 1561 1 2573 108 3 0 chr5 29601814 29602166 -173483366 - THE1A LTR MaLR 0 355 3 687 298 44 46 chr5 29602449 29602838 -173482694 - MER110-int LTR ERV1 -282 4365 3978 327 274 16 32 chr5 29602837 29602961 -173482571 - MER110-int LTR ERV1 -1229 3418 3297 * 1689 169 31 41 chr5 29603496 29603887 -173481645 + MLT1B LTR MaLR 1 387 -3 251 326 33 49 chr5 29603968 29604152 -173481380 - ERVL LTR ERVL -2266 3498 3318 356 326 81 8 chr5 29604166 29604402 -173481130 - L1ME3A LINE L1 -260 5910 5658 1912 150 33 19 chr5 29604414 29604773 -173480759 + THE1B LTR MaLR 1 364 0 5094 132 14 3 chr5 29604773 29605542 -173479990 + THE1B-int LTR MaLR 1 781 -799 1381 263 36 80 chr5 29605542 29606182 -173479350 + LTR9 LTR ERV1 1 612 0 316 206 59 0 chr5 29606216 29606284 -173479248 + HUERS-P3 LTR ERV1 25 96 -7322 * 1295 228 14 24 chr5 29606277 29606571 -173478961 + HUERS-P3 LTR ERV1 244 534 -6884 5316 173 92 47 chr5 29606589 29607286 -173478246 + HUERS-P3 LTR ERV1 749 1413 -6896 188 261 109 0 chr5 29607286 29607378 -173478154 - MER5C DNA MER1_type -222 102 1 5316 173 92 47 chr5 29607378 29607419 -173478113 + HUERS-P3 LTR ERV1 1413 1451 -6858 360 0 0 0 chr5 29607419 29607459 -173478073 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 5316 173 92 47 chr5 29607459 29608510 -173477022 + HUERS-P3 LTR ERV1 1451 2995 -5314 686 182 10 76 chr5 29608508 29608706 -173476826 + MER83B-int LTR ERV1 2388 4320 -560 * 1004 243 35 52 chr5 29608963 29609309 -173476223 + LTR9 LTR ERV1 273 612 0 5443 130 9 2 chr5 29609309 29610110 -173475422 + THE1B-int LTR MaLR 775 1580 0 2010 164 22 27 chr5 29610110 29610476 -173475056 + THE1B LTR MaLR 1 364 0 631 248 60 41 chr5 29610476 29610844 -173474688 - L1ME3A LINE L1 -520 5650 5276 21 0 0 0 chr5 29611040 29611061 -173474471 + AT_rich Low_complexity Low_complexity 1 21 0 710 127 35 12 chr5 29611136 29611309 -173474223 + GA-rich Low_complexity Low_complexity 4 180 0 234 220 0 0 chr5 29611347 29611406 -173474126 + GA-rich Low_complexity Low_complexity 1 59 0 219 291 29 58 chr5 29611410 29611513 -173474019 + L2 LINE L2 2395 2494 -820 458 255 137 63 chr5 29611737 29612008 -173473524 + L2 LINE L2 3015 3305 -8 338 324 28 28 chr5 29613254 29613430 -173472102 + MIR SINE MIR 23 198 -64 241 318 0 0 chr5 29614217 29614280 -173471252 - L2 LINE L2 0 3313 3251 545 317 102 20 chr5 29614469 29614762 -173470770 - L2 LINE L2 -366 2948 2632 219 277 182 19 chr5 29615101 29615260 -173470272 + MIR SINE MIR 65 249 -13 207 283 81 20 chr5 29615300 29615399 -173470133 - L2 LINE L2 -681 2633 2529 360 0 0 0 chr5 29615401 29615441 -173470091 + (TA)n Simple_repeat Simple_repeat 2 41 0 203 152 0 0 chr5 29616196 29616229 -173469303 + T-rich Low_complexity Low_complexity 4 36 0 1020 219 85 54 chr5 29616421 29616773 -173468759 + MLT1A1 LTR MaLR 3 365 0 21 82 0 0 chr5 29618377 29618426 -173467106 + AT_rich Low_complexity Low_complexity 1 49 0 954 345 106 26 chr5 29618567 29618872 -173466660 - L2 LINE L2 -171 3142 2863 1717 128 37 10 chr5 29618872 29619168 -173466364 + AluSx SINE Alu 1 304 -8 954 345 106 26 chr5 29619168 29619673 -173465859 - L2 LINE L2 -450 2863 2260 5899 251 62 54 chr5 29621339 29622824 -173462708 + L1M3e LINE L1 10 1482 -5624 2402 129 3 6 chr5 29622824 29623189 -173462343 - THE1B LTR MaLR 0 364 1 5899 251 62 54 chr5 29623189 29624229 -173461303 + L1M3e LINE L1 1482 3216 -3890 * 6815 216 48 14 chr5 29624223 29626043 -173459489 + L1M3e LINE L1 3111 4992 -2114 21 71 0 0 chr5 29626498 29626540 -173458992 + AT_rich Low_complexity Low_complexity 1 42 0 1546 282 50 49 chr5 29629522 29630573 -173454959 - L1ME LINE L1 -504 5662 4619 2147 53 50 27 chr5 29630573 29630874 -173454658 + AluY SINE Alu 1 308 -3 1546 282 50 49 chr5 29630874 29631029 -173454503 - L1ME LINE L1 -1547 4619 4466 285 68 17 34 chr5 29631097 29631156 -173454376 + (TA)n Simple_repeat Simple_repeat 1 58 0 * 360 0 0 0 chr5 29631155 29631195 -173454337 + (GA)n Simple_repeat Simple_repeat 2 41 0 519 220 0 0 chr5 29631195 29631286 -173454246 - FLAM_A SINE Alu -36 106 16 433 270 104 24 chr5 29631341 29631552 -173453980 - L1ME LINE L1 -1774 4372 4145 548 365 180 15 chr5 29632035 29632898 -173452634 - L2 LINE L2 -473 2841 1837 609 149 0 0 chr5 29633150 29633244 -173452288 - AluS SINE Alu -218 94 1 35 71 0 0 chr5 29633553 29633623 -173451909 + AT_rich Low_complexity Low_complexity 1 70 0 304 385 86 20 chr5 29635614 29636112 -173449420 - L2 LINE L2 -2116 1198 668 181 0 0 65 chr5 29636168 29636199 -173449333 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 191 353 49 43 chr5 29636348 29636532 -173449000 - L2 LINE L2 -2831 483 299 519 322 33 11 chr5 29637340 29637523 -173448009 - MER5A DNA MER1_type -2 187 1 1778 177 5 39 chr5 29637633 29638045 -173447487 - L1 LINE L1 -1603 4543 4146 693 186 88 44 chr5 29638339 29638543 -173446989 + LTR7 LTR ERV1 238 450 0 569 269 57 26 chr5 29639329 29639522 -173446010 + MIR SINE MIR 18 216 -46 246 284 37 0 chr5 29639634 29639743 -173445789 + (TA)n Simple_repeat Simple_repeat 2 114 0 844 261 61 63 chr5 29639832 29639889 -173445643 - MER92A LTR ERV1 0 412 356 1952 150 51 23 chr5 29639889 29640243 -173445289 - THE1B LTR MaLR 0 364 1 10869 111 10 6 chr5 29640243 29641816 -173443716 - THE1B-int LTR MaLR 0 1580 1 2082 145 48 20 chr5 29641818 29642170 -173443362 - THE1B LTR MaLR -2 362 1 844 261 61 63 chr5 29642170 29642518 -173443014 - MER92A LTR ERV1 -56 356 4 24 0 0 0 chr5 29642785 29642809 -173442723 + AT_rich Low_complexity Low_complexity 1 24 0 209 222 0 0 chr5 29643116 29643161 -173442371 + (TA)n Simple_repeat Simple_repeat 1 45 0 200 228 18 0 chr5 29643556 29643613 -173441919 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 296 188 14 0 chr5 29644004 29644073 -173441459 + (TA)n Simple_repeat Simple_repeat 2 71 0 1543 204 127 32 chr5 29644073 29644505 -173441027 - MLT2B2 LTR ERVL -40 475 3 23 0 0 0 chr5 29644626 29644649 -173440883 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr5 29645202 29645226 -173440306 + AT_rich Low_complexity Low_complexity 1 24 0 239 325 0 8 chr5 29645357 29645474 -173440058 + (TA)n Simple_repeat Simple_repeat 2 117 0 328 320 0 0 chr5 29646421 29646524 -173439008 + MER103 DNA DNA 3 105 -61 23 0 0 0 chr5 29646727 29646750 -173438782 + AT_rich Low_complexity Low_complexity 1 23 0 601 239 5 46 chr5 29646767 29646964 -173438568 - L1MC3 LINE L1 -1 7784 7596 410 192 0 0 chr5 29647003 29647081 -173438451 - L1MC3 LINE L1 -923 6862 6785 189 0 0 0 chr5 29647135 29647156 -173438376 + (A)n Simple_repeat Simple_repeat 1 21 0 21 36 0 0 chr5 29647948 29647976 -173437556 + AT_rich Low_complexity Low_complexity 1 28 0 383 235 25 17 chr5 29648354 29648473 -173437059 - L1MA10 LINE L1 -2 6332 6213 1394 186 28 28 chr5 29648494 29648704 -173436828 - MLT1B LTR MaLR 0 390 178 2782 105 84 0 chr5 29648704 29649122 -173436410 - MLT2A2 LTR ERVL 0 453 1 1394 186 28 28 chr5 29649122 29649202 -173436330 - MLT1B LTR MaLR -211 179 100 1721 117 0 0 chr5 29649220 29649460 -173436072 - AluSg/x SINE Alu 0 310 71 326 67 0 22 chr5 29649460 29649505 -173436027 + AluS SINE Alu 23 66 -237 297 148 22 237 chr5 29649498 29649570 -173435962 - MLT1B LTR MaLR -284 106 75 * 1948 124 3 16 chr5 29649570 29649876 -173435656 + AluSq SINE Alu 1 302 -11 297 148 22 237 chr5 29649876 29649938 -173435594 - MLT1B LTR MaLR -315 75 1 1780 246 107 17 chr5 29649969 29650906 -173434626 - L1ME1 LINE L1 -161 6005 4991 5334 8 2 0 chr5 29650916 29651540 -173433992 + L1PA2 LINE L1 5544 6168 0 6356 231 50 7 chr5 29652224 29655185 -173430347 + L1PA13 LINE L1 1 3148 -3649 354 258 194 31 chr5 29656475 29656781 -173428751 - MLT1E LTR MaLR 0 542 101 1857 243 67 2 chr5 29657807 29658297 -173427235 + L1M4 LINE L1 3623 4144 -2002 2552 200 6 30 chr5 29658314 29658808 -173426724 + MLT2B3 LTR ERVL 47 528 -26 2648 238 66 23 chr5 29658814 29659689 -173425843 + L1M4 LINE L1 4172 5084 -1062 189 0 0 0 chr5 29660211 29660232 -173425300 + (GA)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr5 29660238 29660259 -173425273 + AT_rich Low_complexity Low_complexity 1 21 0 1515 119 0 0 chr5 29660820 29661038 -173424494 + AluSx SINE Alu 1 218 -94 1894 144 6 16 chr5 29661935 29662247 -173423285 + AluSc SINE Alu 1 309 0 1935 141 0 3 chr5 29662260 29662544 -173422988 + AluSx SINE Alu 4 286 -26 290 245 49 10 chr5 29662592 29662694 -173422838 - L1ME4a LINE L1 -60 6061 5956 4802 107 92 120 chr5 29662747 29662762 -173422770 - pTR5 LTR ERV1 0 2438 2424 765 94 51 0 chr5 29662762 29662879 -173422653 - L1PA15 LINE L1 -4 6161 6039 4802 107 92 120 chr5 29662879 29664459 -173421073 - pTR5 LTR ERV1 -14 2424 136 2073 120 19 0 chr5 29664459 29664775 -173420757 - L1PA15 LINE L1 -121 6044 5723 24 0 0 0 chr5 29665551 29665575 -173419957 + AT_rich Low_complexity Low_complexity 1 24 0 4910 252 45 17 chr5 29666716 29668932 -173416600 - L1MB8 LINE L1 -2 6176 3860 3560 211 107 106 chr5 29668934 29670684 -173414848 + MER52A LTR ERV1 1 1751 -4 1318 251 44 32 chr5 29670690 29671187 -173414345 - L1MB8 LINE L1 -2299 3847 3345 32 86 0 0 chr5 29671208 29671289 -173414243 + AT_rich Low_complexity Low_complexity 1 81 0 258 307 33 43 chr5 29671331 29671634 -173413898 - L1M4 LINE L1 -2260 3886 3587 246 158 0 0 chr5 29672005 29672043 -173413489 - L1 LINE L1 -2475 3671 3634 22 35 0 0 chr5 29672201 29672230 -173413302 + AT_rich Low_complexity Low_complexity 1 29 0 1407 58 0 0 chr5 29672577 29672751 -173412781 - AluY SINE Alu 0 311 138 2023 298 100 22 chr5 29673698 29674609 -173410923 + L2 LINE L2 1716 2697 -617 2042 172 3 0 chr5 29674609 29674946 -173410586 - MER6A DNA MER2_type -267 338 1 1031 172 113 0 chr5 29674946 29675149 -173410383 - L1MC2 LINE L1 -421 5923 5698 498 380 22 47 chr5 29675156 29675480 -173410052 + L2 LINE L2 2722 3038 -275 434 360 66 4 chr5 29676119 29676361 -173409171 + MIR SINE MIR 5 261 -1 238 156 0 0 chr5 29676368 29676417 -173409115 - MLT2B2 LTR ERVL 0 520 480 251 232 0 0 chr5 29676431 29676487 -173409045 + (TA)n Simple_repeat Simple_repeat 2 57 0 201 121 0 0 chr5 29676499 29676532 -173409000 + (TG)n Simple_repeat Simple_repeat 2 34 0 378 0 0 0 chr5 29676532 29676574 -173408958 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 1605 193 145 22 chr5 29676574 29676974 -173408558 - MLT2B2 LTR ERVL -66 449 1 28 29 0 0 chr5 29677504 29677539 -173407993 + AT_rich Low_complexity Low_complexity 1 35 0 295 100 0 0 chr5 29678276 29678326 -173407206 - L1PA4 LINE L1 0 6155 6106 214 257 38 19 chr5 29679217 29679322 -173406210 + (TATG)n Simple_repeat Simple_repeat 2 108 0 2239 116 3 0 chr5 29679662 29679973 -173405559 - AluSx SINE Alu 0 312 1 239 300 14 14 chr5 29680196 29680266 -173405266 - L2 LINE L2 0 3272 3203 23 33 0 0 chr5 29681085 29681115 -173404417 + AT_rich Low_complexity Low_complexity 1 30 0 25 75 0 0 chr5 29681216 29681269 -173404263 + AT_rich Low_complexity Low_complexity 1 53 0 312 222 27 54 chr5 29731550 29731735 -173353797 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 808 230 86 3 chr5 29731735 29732039 -173353493 - L1MDa LINE L1 -4203 2337 2009 24 77 0 0 chr5 29732272 29732324 -173353208 + AT_rich Low_complexity Low_complexity 1 52 0 501 378 95 17 chr5 29732414 29732835 -173352697 + L2 LINE L2 2225 2678 -636 183 42 0 0 chr5 29732924 29732948 -173352584 + (TC)n Simple_repeat Simple_repeat 2 25 0 551 268 131 16 chr5 29732961 29733275 -173352257 - MER69 DNA AcHobo -19 2507 2158 767 324 54 4 chr5 29733373 29733651 -173351881 - MER69 DNA AcHobo -584 642 351 388 91 30 0 chr5 29734159 29734225 -173351307 + CT-rich Low_complexity Low_complexity 3 70 0 244 246 16 0 chr5 29734461 29734522 -173351010 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 27 49 0 0 chr5 29734771 29734812 -173350720 + AT_rich Low_complexity Low_complexity 1 41 0 265 347 38 20 chr5 29735417 29735585 -173349947 + MIR SINE MIR 42 212 -50 263 339 0 11 chr5 29735630 29735807 -173349725 + (CATA)n Simple_repeat Simple_repeat 2 176 0 2066 154 5 29 chr5 29736071 29736453 -173349079 - THE1C LTR MaLR -2 373 1 710 273 27 36 chr5 29736737 29737067 -173348465 - HAL1b LINE L1 -805 543 217 21 36 0 0 chr5 29737081 29737109 -173348423 + AT_rich Low_complexity Low_complexity 1 28 0 210 71 0 0 chr5 29737189 29737217 -173348315 + (TC)n Simple_repeat Simple_repeat 2 29 0 29 28 0 0 chr5 29737833 29737869 -173347663 + AT_rich Low_complexity Low_complexity 1 36 0 318 312 145 17 chr5 29738909 29738982 -173346550 + L1ME3A LINE L1 5633 5695 -475 1436 206 21 14 chr5 29738982 29739273 -173346259 + AluJo SINE Alu 1 293 -19 318 312 145 17 chr5 29739273 29739433 -173346099 + L1ME3A LINE L1 5695 5896 -274 581 213 7 29 chr5 29739555 29739691 -173345841 + AluJo SINE Alu 66 198 -114 22 0 0 0 chr5 29740466 29740488 -173345044 + AT_rich Low_complexity Low_complexity 1 22 0 882 118 31 9 chr5 29740853 29741082 -173344450 + CT-rich Low_complexity Low_complexity 1 233 0 228 211 0 0 chr5 29741082 29741120 -173344412 + polypyrimidine Low_complexity Low_complexity 2 39 0 341 121 84 108 chr5 29741220 29741303 -173344229 - MER51D LTR ERV1 -77 580 500 689 268 69 90 chr5 29742050 29742335 -173343197 + L1MC4a LINE L1 6616 6906 -1055 2075 131 0 20 chr5 29742335 29742641 -173342891 + AluSg SINE Alu 1 300 -10 689 268 69 90 chr5 29742641 29742986 -173342546 + L1MC4a LINE L1 6906 7238 -723 512 287 84 43 chr5 29743129 29743523 -173342009 + L1MC5 LINE L1 7277 7686 -275 180 301 75 32 chr5 29744473 29744566 -173340966 + L2 LINE L2 3203 3299 -14 304 169 15 0 chr5 29745200 29745265 -173340267 - MER116 DNA Mariner -1 79 14 26 74 0 0 chr5 29745792 29745846 -173339686 + AT_rich Low_complexity Low_complexity 1 54 0 27 0 0 0 chr5 29746101 29746128 -173339404 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr5 29746752 29746777 -173338755 + AT_rich Low_complexity Low_complexity 1 25 0 300 286 86 51 chr5 29747167 29747401 -173338131 - HAL1 LINE L1 -1 2506 2265 1397 143 0 9 chr5 29747552 29747762 -173337770 - AluSx SINE Alu -66 246 39 1819 142 0 11 chr5 29748491 29748765 -173336767 + AluSx SINE Alu 1 271 -41 205 167 42 0 chr5 29748773 29748821 -173336711 + T-rich Low_complexity Low_complexity 2 51 0 1252 176 51 62 chr5 29749544 29749923 -173335609 - MER67C LTR ERV1 -242 272 1 3119 227 68 58 chr5 29750176 29750548 -173334984 - L1MD1 LINE L1 0 6636 6269 2272 97 0 13 chr5 29750548 29750859 -173334673 - AluSc SINE Alu -2 307 1 3119 227 68 58 chr5 29750859 29752150 -173333382 - L1MD1 LINE L1 -367 6269 4946 1789 177 36 33 chr5 29752159 29752212 -173333320 + MLT1B LTR MaLR 1 52 -338 2393 107 19 16 chr5 29752212 29752575 -173332957 + THE1B LTR MaLR 1 364 0 1789 177 36 33 chr5 29752575 29752910 -173332622 + MLT1B LTR MaLR 52 390 0 3553 255 90 57 chr5 29752915 29753360 -173332172 - L1MD1 LINE L1 -1607 4933 4504 654 12 0 24 chr5 29753360 29753444 -173332088 + L1PA6 LINE L1 6070 6151 -3 3553 255 90 57 chr5 29753444 29753965 -173331567 - L1MD1 LINE L1 -2036 4504 4002 1956 100 3 91 chr5 29753965 29754294 -173331238 + AluSp SINE Alu 4 303 -10 3553 255 90 57 chr5 29754294 29754755 -173330777 - L1MD1 LINE L1 -2538 4002 3558 881 166 39 34 chr5 29754755 29754960 -173330572 - L1MA3 LINE L1 -2 6303 6098 3553 255 90 57 chr5 29754960 29756061 -173329471 - L1MD1 LINE L1 -2982 3558 2326 291 154 40 20 chr5 29756062 29756211 -173329321 + (TA)n Simple_repeat Simple_repeat 1 152 0 201 126 28 70 chr5 29756189 29756332 -173329200 + (TTATA)n Simple_repeat Simple_repeat 3 139 0 * 27 92 0 0 chr5 29756333 29756409 -173329123 + AT_rich Low_complexity Low_complexity 1 76 0 244 162 40 75 chr5 29756410 29756583 -173328949 + (TATAA)n Simple_repeat Simple_repeat 3 169 0 1181 238 5 68 chr5 29757123 29757493 -173328039 + MLT2C1 LTR ERVL 3 349 -48 210 203 0 51 chr5 29757493 29757552 -173327980 + (TCTCTG)n Simple_repeat Simple_repeat 4 59 0 1045 270 109 55 chr5 29757616 29758238 -173327294 - L1MC4 LINE L1 -143 7899 7244 689 222 30 15 chr5 29758242 29758440 -173327092 - L1MC4 LINE L1 -952 7090 6890 686 214 12 18 chr5 29758543 29758711 -173326821 - L1MB8 LINE L1 -6 6172 6006 230 164 0 49 chr5 29758718 29758779 -173326753 - L1MB8 LINE L1 -506 5668 5611 1209 194 24 10 chr5 29758802 29759090 -173326442 + L1MB8 LINE L1 5611 5902 -276 1679 161 37 7 chr5 29759091 29759509 -173326023 + L1M2 LINE L1 5148 5574 -717 6614 65 1 1 chr5 29759555 29761044 -173324488 - L1PA5 LINE L1 0 6154 4690 1659 70 0 0 chr5 29761044 29761259 -173324273 + L1PA5 LINE L1 4445 4659 -1487 469 302 37 55 chr5 29761434 29761823 -173323709 + ERVL LTR ERVL 1940 2365 -2864 302 326 36 7 chr5 29762077 29762215 -173323317 + ERVL LTR ERVL 2692 2833 -2163 350 380 62 7 chr5 29762378 29762828 -173322704 + ERVL LTR ERVL 3068 3542 -2112 262 267 50 0 chr5 29763723 29763824 -173321708 - HAL1b LINE L1 -257 1091 986 1221 131 0 6 chr5 29763944 29764120 -173321412 - AluSg/x SINE Alu -49 261 87 370 116 43 43 chr5 29764121 29764190 -173321342 + AluS SINE Alu 9 77 -226 796 59 37 15 chr5 29764255 29764391 -173321141 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 631 301 86 46 chr5 29764530 29765028 -173320504 - HAL1b LINE L1 -741 607 90 1841 135 0 0 chr5 29765429 29765754 -173319778 + AluSx SINE Alu 3 327 0 190 54 27 27 chr5 29765754 29765791 -173319741 + (TA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr5 29767158 29767179 -173318353 + AT_rich Low_complexity Low_complexity 1 21 0 2132 100 0 0 chr5 29768384 29768665 -173316867 + AluY SINE Alu 1 307 0 235 0 0 0 chr5 29768665 29768691 -173316841 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2219 229 10 22 chr5 29768874 29769380 -173316152 - LTR31 LTR ERV1 -16 603 104 23 33 0 0 chr5 29769786 29769816 -173315716 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr5 29770237 29770270 -173315262 + AT_rich Low_complexity Low_complexity 1 33 0 842 234 12 6 chr5 29770379 29770550 -173314982 + MER45A DNA AcHobo 7 178 0 1384 208 0 41 chr5 29771592 29771921 -173313611 + AluJo SINE Alu 1 317 0 340 354 67 67 chr5 29772180 29772703 -173312829 + L2 LINE L2 2452 2974 -340 1329 137 19 5 chr5 29773263 29773468 -173312064 - AluSg/x SINE Alu -14 298 91 769 176 0 8 chr5 29773482 29773613 -173311919 - FLAM_C SINE Alu -3 130 1 710 191 66 0 chr5 29774100 29774252 -173311280 - MLT1A1 LTR MaLR 0 365 204 1195 159 0 0 chr5 29774384 29774566 -173310966 - AluSg/x SINE Alu -13 299 118 866 200 34 11 chr5 29774598 29774773 -173310759 - MLT1A1 LTR MaLR -183 182 4 1921 163 0 7 chr5 29774975 29775281 -173310251 - AluSx SINE Alu -8 304 1 815 278 163 47 chr5 29775604 29776151 -173309381 - MLT1E2 LTR MaLR 0 654 5 227 306 25 25 chr5 29776779 29776900 -173308632 - MLT1J LTR MaLR -161 350 230 2507 266 45 44 chr5 29778717 29779798 -173305734 + L1MEc LINE L1 1973 3051 -3164 2116 112 10 3 chr5 29779798 29780103 -173305429 + AluSx SINE Alu 1 307 -5 2507 266 45 44 chr5 29780103 29780414 -173305118 + L1MEc LINE L1 3051 3317 -2898 2256 145 67 12 chr5 29780414 29780820 -173304712 + MSTA LTR MaLR 1 428 0 2507 266 45 44 chr5 29780820 29780836 -173304696 + L1MEc LINE L1 3317 3331 -2884 345 296 45 126 chr5 29781056 29781563 -173303969 + L1MC4 LINE L1 7545 8010 -32 785 289 101 50 chr5 29782387 29782844 -173302688 + MLT1F1 LTR MaLR 80 559 -8 23 54 0 0 chr5 29783621 29783658 -173301874 + AT_rich Low_complexity Low_complexity 1 37 0 206 255 0 0 chr5 29783948 29783999 -173301533 + (TTA)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr5 29785752 29785773 -173299759 + AT_rich Low_complexity Low_complexity 1 21 0 6552 99 62 12 chr5 29785810 29786146 -173299386 - L1PA8A LINE L1 -314 5817 5499 2139 114 0 3 chr5 29786146 29786444 -173299088 - AluSg1 SINE Alu -12 297 1 6552 99 62 12 chr5 29786444 29787636 -173297896 - L1PA8A LINE L1 -632 5499 4206 304 163 0 0 chr5 29787636 29787685 -173297847 + MLT1B LTR MaLR 336 384 -6 592 271 68 51 chr5 29787693 29787985 -173297547 + MLT2C1 LTR ERVL 1 297 -100 309 89 0 0 chr5 29787991 29788036 -173297496 + (TC)n Simple_repeat Simple_repeat 2 46 0 363 152 0 0 chr5 29788037 29788116 -173297416 + (CA)n Simple_repeat Simple_repeat 1 79 0 693 208 59 25 chr5 29788170 29788372 -173297160 - L1MD3 LINE L1 0 7995 7787 904 239 77 68 chr5 29788402 29788899 -173296633 - MLT1D LTR MaLR -4 501 1 21 36 0 0 chr5 29789358 29789386 -173296146 + AT_rich Low_complexity Low_complexity 1 28 0 621 136 58 12 chr5 29790098 29790341 -173295191 + CT-rich Low_complexity Low_complexity 1 254 0 2213 100 7 0 chr5 29790817 29791107 -173294425 + AluSc SINE Alu 1 292 -17 22 56 0 0 chr5 29792203 29792239 -173293293 + AT_rich Low_complexity Low_complexity 1 36 0 1247 219 64 3 chr5 29792560 29792843 -173292689 - AluJo SINE Alu -2 300 1 22 56 0 0 chr5 29792965 29793001 -173292531 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr5 29793476 29793504 -173292028 + AT_rich Low_complexity Low_complexity 1 28 0 445 285 6 0 chr5 29793779 29793898 -173291634 + MIR SINE MIR 39 161 -47 234 300 167 24 chr5 29794442 29794652 -173290880 - L1M4 LINE L1 -1224 4922 4683 277 122 0 0 chr5 29794742 29794783 -173290749 + U2 snRNA snRNA 1 41 -147 2097 153 34 39 chr5 29794807 29795246 -173290286 + LTR56 LTR ERV1 9 445 0 1001 259 60 34 chr5 29795268 29795671 -173289861 - L1M4 LINE L1 -1627 4519 4101 1492 212 76 27 chr5 29795671 29796081 -173289451 + MER57B LTR ERV1 5 434 0 1001 259 60 34 chr5 29796081 29796125 -173289407 - L1M4 LINE L1 -2045 4101 4060 4724 92 36 0 chr5 29799249 29799946 -173285586 + LTR30 LTR ERV1 1 722 0 729 325 90 36 chr5 29800205 29800738 -173284794 + ERVL LTR ERVL 2669 3230 -2534 220 317 19 29 chr5 29801333 29801437 -173284095 + L2 LINE L2 2145 2247 -1067 * 233 376 24 57 chr5 29801427 29801759 -173283773 - L2 LINE L2 -1191 2123 1803 187 393 36 0 chr5 29802866 29802978 -173282554 + L2 LINE L2 1896 2011 -1303 191 278 0 0 chr5 29803115 29803151 -173282381 + L2 LINE L2 3267 3302 -11 347 304 84 31 chr5 29803202 29803429 -173282103 + L2 LINE L2 3075 3313 0 1988 123 13 13 chr5 29804257 29804567 -173280965 + AluSx SINE Alu 1 310 -2 231 274 157 32 chr5 29804896 29805144 -173280388 + HAL1b LINE L1 95 373 -975 983 274 87 19 chr5 29805206 29805575 -173279957 - L1ME3A LINE L1 -328 5842 5449 274 333 56 5 chr5 29805639 29805852 -173279680 + L1M4 LINE L1 5164 5387 -759 23 0 0 0 chr5 29806013 29806036 -173279496 + AT_rich Low_complexity Low_complexity 1 23 0 2318 121 0 50 chr5 29806036 29806246 -173279286 - L1MA2 LINE L1 -7 6297 6078 2372 55 0 0 chr5 29806246 29806535 -173278997 - AluY SINE Alu -17 294 6 207 0 0 0 chr5 29806539 29806562 -173278970 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1871 98 8 0 chr5 29806565 29806810 -173278722 - AluSc SINE Alu -32 277 31 2318 121 0 50 chr5 29806810 29806994 -173278538 - L1MA2 LINE L1 -231 6073 5914 237 315 68 93 chr5 29806996 29807320 -173278212 - L1MEd LINE L1 -5596 523 208 39 50 0 0 chr5 29809494 29809554 -173275978 + AT_rich Low_complexity Low_complexity 1 60 0 237 320 54 54 chr5 29811191 29811338 -173274194 + MER5A DNA MER1_type 36 182 -7 2261 97 0 0 chr5 29812542 29812841 -173272691 - AluY SINE Alu -12 299 1 1785 170 75 154 chr5 29813704 29814494 -173271038 + LTR8A LTR ERV1 1 727 0 189 0 0 0 chr5 29815610 29815631 -173269901 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 2198 82 7 0 chr5 29815631 29815911 -173269621 - AluY SINE Alu -29 282 1 890 287 37 6 chr5 29817426 29817774 -173267758 + L1M4 LINE L1 3703 4061 -2085 2653 236 85 6 chr5 29817796 29818940 -173266592 + L1M4 LINE L1 4384 5618 -566 1156 206 61 8 chr5 29818940 29819202 -173266330 + MLT1A1 LTR MaLR 1 276 -89 1075 36 0 29 chr5 29819205 29819345 -173266187 + L1PA10 LINE L1 6031 6166 -2 997 201 16 39 chr5 29819496 29819750 -173265782 + L1PA16 LINE L1 4481 4728 -1418 3990 179 16 30 chr5 29819753 29820583 -173264949 + L1PA16 LINE L1 5312 6129 -37 275 216 46 26 chr5 29820583 29820736 -173264796 + (TTATA)n Simple_repeat Simple_repeat 4 159 0 * 391 209 45 40 chr5 29820720 29820897 -173264635 + (TA)n Simple_repeat Simple_repeat 2 179 0 421 186 36 25 chr5 29820926 29821253 -173264279 + (TA)n Simple_repeat Simple_repeat 1 330 0 24 85 0 0 chr5 29821307 29821366 -173264166 + AT_rich Low_complexity Low_complexity 1 59 0 356 209 33 44 chr5 29821366 29821619 -173263913 + (TA)n Simple_repeat Simple_repeat 1 250 0 244 198 31 62 chr5 29821599 29821761 -173263771 + (TTATA)n Simple_repeat Simple_repeat 5 161 0 * 324 192 45 13 chr5 29821794 29821950 -173263582 + (TA)n Simple_repeat Simple_repeat 1 161 0 23 86 0 0 chr5 29822056 29822114 -173263418 + AT_rich Low_complexity Low_complexity 1 58 0 389 276 248 5 chr5 29822247 29822457 -173263075 - MLT1E1 LTR MaLR -391 263 3 225 218 92 23 chr5 29822619 29822706 -173262826 - L1ME3A LINE L1 -134 6036 5944 973 176 22 39 chr5 29823010 29823192 -173262340 + MER30 DNA MER1_type 52 230 0 629 245 65 43 chr5 29823192 29823462 -173262070 + MER52A LTR ERV1 1 380 -1375 24 91 0 0 chr5 29823516 29823582 -173261950 + AT_rich Low_complexity Low_complexity 1 66 0 429 36 0 0 chr5 29823858 29823913 -173261619 + (TG)n Simple_repeat Simple_repeat 2 56 0 1902 138 16 13 chr5 29824240 29824551 -173260981 + AluSq SINE Alu 1 312 -1 22 0 0 0 chr5 29825560 29825582 -173259950 + AT_rich Low_complexity Low_complexity 1 22 0 307 282 12 0 chr5 29826550 29826635 -173258897 + MIR SINE MIR 83 168 -94 23 54 0 0 chr5 29826698 29826735 -173258797 + AT_rich Low_complexity Low_complexity 1 37 0 548 226 8 8 chr5 29826923 29827056 -173258476 - MLT1A1 LTR MaLR 0 365 233 256 132 0 179 chr5 29827084 29827190 -173258342 + LTR38B LTR ERV1 27 113 -497 967 215 137 41 chr5 29827281 29827717 -173257815 + LTR38B LTR ERV1 92 556 0 867 220 49 31 chr5 29827717 29827940 -173257592 - MLT1A1 LTR MaLR -129 236 10 2333 311 23 19 chr5 29828537 29829421 -173256111 - ERVL LTR ERVL -2396 3368 2482 28 0 0 0 chr5 29829428 29829456 -173256076 + AT_rich Low_complexity Low_complexity 1 28 0 3620 60 0 11 chr5 29829466 29829932 -173255600 - L1PA7 LINE L1 -11 6143 5683 460 119 0 0 chr5 29829932 29829999 -173255533 + L1PA7 LINE L1 5631 5697 -475 1829 327 41 6 chr5 29830027 29830906 -173254626 - ERVL LTR ERVL -3238 2438 1477 493 314 29 5 chr5 29831076 29831283 -173254249 - ERVL LTR ERVL -4448 1316 1105 322 368 14 0 chr5 29831815 29831959 -173253573 - ERVL LTR ERVL -5154 610 465 423 295 20 13 chr5 29832136 29832285 -173253247 - MLT2F LTR ERVL -513 150 1 648 251 43 21 chr5 29832513 29832700 -173252832 + MER20 DNA MER1_type 29 219 0 186 43 0 0 chr5 29833243 29833266 -173252266 + (A)n Simple_repeat Simple_repeat 1 23 0 70 92 0 0 chr5 29833368 29833564 -173251968 + AT_rich Low_complexity Low_complexity 1 196 0 186 422 37 18 chr5 29833625 29833734 -173251798 - MER5A DNA MER1_type 0 189 79 247 335 64 37 chr5 29834002 29834190 -173251342 - MLT1I LTR MaLR -17 392 200 23 0 0 0 chr5 29835606 29835629 -173249903 + AT_rich Low_complexity Low_complexity 1 23 0 48 0 0 0 chr5 29835646 29835694 -173249838 + AT_rich Low_complexity Low_complexity 1 48 0 1735 154 159 16 chr5 29836509 29836873 -173248659 - MSTA LTR MaLR -12 416 1 1714 86 0 21 chr5 29837275 29837509 -173248023 - AluSp SINE Alu -2 311 83 23 33 0 0 chr5 29837866 29837896 -173247636 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr5 29838594 29838616 -173246916 + AT_rich Low_complexity Low_complexity 1 22 0 223 300 0 109 chr5 29839272 29839346 -173246186 - L2 LINE L2 -19 3253 3193 1969 159 0 7 chr5 29839346 29839648 -173245884 + AluSx SINE Alu 1 300 -12 223 300 0 109 chr5 29839648 29839683 -173245849 - L2 LINE L2 -79 3193 3156 11370 218 25 20 chr5 29840516 29846446 -173239086 - L1PA16 LINE L1 0 6869 899 21 0 0 0 chr5 29846752 29846773 -173238759 + AT_rich Low_complexity Low_complexity 1 21 0 1974 130 9 13 chr5 29847541 29847856 -173237676 + L1PB4 LINE L1 5830 6143 -13 247 314 58 22 chr5 29847862 29847999 -173237533 + MIR SINE MIR 57 198 -64 940 294 95 24 chr5 29848909 29849967 -173235565 - L1ME3 LINE L1 -50 6112 4921 21 0 0 0 chr5 29850071 29850092 -173235440 + AT_rich Low_complexity Low_complexity 1 21 0 1619 214 58 16 chr5 29850551 29850916 -173234616 + MLT1B LTR MaLR 1 380 -10 245 256 47 12 chr5 29852563 29852649 -173232883 - MLT1I LTR MaLR -17 392 304 29 28 0 0 chr5 29853023 29853059 -173232473 + AT_rich Low_complexity Low_complexity 1 36 0 868 249 40 20 chr5 29853316 29853565 -173231967 + MLT1E1 LTR MaLR 6 259 -395 690 285 34 28 chr5 29854026 29854380 -173231152 - L1ME3 LINE L1 -2197 3949 3594 216 0 0 0 chr5 29854710 29854734 -173230798 + (TA)n Simple_repeat Simple_repeat 2 25 0 318 26 0 0 chr5 29854761 29854800 -173230732 + (CA)n Simple_repeat Simple_repeat 2 40 0 729 191 50 0 chr5 29854823 29854964 -173230568 + Tigger2 DNA MER2_type 4 151 -2567 4074 149 3 46 chr5 29854974 29855717 -173229815 + Tigger2 DNA MER2_type 330 1040 -1678 2004 113 3 0 chr5 29855717 29856025 -173229507 - AluSp SINE Alu 0 309 1 3981 158 72 3 chr5 29856043 29856750 -173228782 + Tigger2 DNA MER2_type 1963 2718 0 309 198 0 0 chr5 29856750 29856836 -173228696 + (TA)n Simple_repeat Simple_repeat 1 86 0 226 303 0 0 chr5 29856849 29856938 -173228594 - L1MC4 LINE L1 -1339 6703 6615 801 195 11 63 chr5 29857052 29857242 -173228290 - MLT2B1 LTR ERVL -264 256 77 773 224 0 0 chr5 29857265 29857408 -173228124 - ERVL LTR ERVL -1022 4742 4600 1433 224 53 28 chr5 29857418 29857779 -173227753 - MLT1A2 LTR MaLR 0 374 5 1467 204 3 19 chr5 29857841 29858155 -173227377 - AluJo SINE Alu -3 309 1 21 36 0 0 chr5 29858192 29858220 -173227312 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chr5 29858591 29858623 -173226909 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr5 29859017 29859038 -173226494 + AT_rich Low_complexity Low_complexity 1 21 0 1954 137 0 4 chr5 29859225 29859563 -173225969 - AluSg SINE Alu 0 341 5 1934 165 0 0 chr5 29859566 29859863 -173225669 - AluSx SINE Alu -15 297 1 485 221 12 86 chr5 29859944 29860107 -173225425 + LTR52 LTR ERVL 1 151 -270 236 127 91 18 chr5 29860108 29860163 -173225369 + L1M4 LINE L1 3651 3709 -2437 1852 148 80 14 chr5 29860166 29860518 -173225014 + THE1C LTR MaLR 1 375 0 1977 148 51 24 chr5 29860521 29860853 -173224679 - THE1B LTR MaLR -8 356 16 11191 112 3 0 chr5 29860860 29862435 -173223097 - THE1B-int LTR MaLR 0 1580 1 1945 138 63 20 chr5 29862435 29862782 -173222750 - THE1B LTR MaLR 0 364 3 5897 182 26 94 chr5 29862790 29864417 -173221115 + L1M2 LINE L1 3708 5164 -1127 263 71 24 0 chr5 29864417 29864459 -173221073 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 5897 182 26 94 chr5 29864459 29864839 -173220693 + L1M2 LINE L1 5164 5568 -723 2554 55 3 0 chr5 29864840 29865166 -173220366 + L1P LINE L1 3455 3781 -2365 581 51 0 117 chr5 29865267 29865404 -173220128 - L1P LINE L1 -2480 3666 3546 208 221 0 44 chr5 29967384 29967452 -173118080 + (TATG)n Simple_repeat Simple_repeat 4 68 0 235 138 35 17 chr5 29967566 29967624 -173117908 + (TA)n Simple_repeat Simple_repeat 1 59 0 273 59 0 0 chr5 29967683 29967717 -173117815 - U2 snRNA snRNA -154 34 1 1908 99 24 24 chr5 29967888 29968182 -173117350 + AluSx SINE Alu 1 294 -18 185 91 0 30 chr5 29968231 29968264 -173117268 + (CGGGA)n Simple_repeat Simple_repeat 2 33 0 225 274 0 0 chr5 29968727 29968778 -173116754 + GA-rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr5 29968872 29968893 -173116639 + AT_rich Low_complexity Low_complexity 1 21 0 749 226 62 4 chr5 29969360 29969703 -173115829 - MLT1D LTR MaLR 0 505 115 327 137 0 0 chr5 29969705 29969756 -173115776 - MADE1 DNA Mariner 0 80 30 280 288 0 0 chr5 29969784 29969850 -173115682 - MLT1D LTR MaLR -439 66 1 4992 201 51 59 chr5 29969886 29971589 -173113943 + L1MC1 LINE L1 4634 6324 -9 285 242 11 55 chr5 29971649 29971740 -173113792 - Tigger5 DNA MER2_type 0 2323 2237 1568 267 29 27 chr5 29971891 29972371 -173113161 - LTR38 LTR ERV1 -11 545 65 375 376 12 32 chr5 29972852 29973102 -173112430 - LTR38-int LTR ERV1 -257 6865 6621 258 196 59 0 chr5 29973096 29973147 -173112385 - PABL_B-int LTR ERV1 -5090 2032 1979 * 469 284 84 47 chr5 29973254 29973613 -173111919 + LTR15 LTR ERV1 104 475 -18 1566 180 40 42 chr5 29973623 29974297 -173111235 - MER49 LTR ERV1 -212 711 1 578 132 5 36 chr5 29974301 29974488 -173111044 - LTR38-int LTR ERV1 -1023 7097 6829 681 237 43 0 chr5 29974506 29974645 -173110887 - LTR38-int LTR ERV1 -608 6150 6006 288 184 78 136 chr5 29974955 29975058 -173110474 - LTR38-int LTR ERV1 -4240 3880 3784 740 201 146 18 chr5 29975255 29975630 -173109902 - LTR38-int LTR ERV1 -4513 2245 1663 2022 100 0 0 chr5 29975634 29975893 -173109639 - AluSc SINE Alu -20 289 31 5802 187 50 33 chr5 29975893 29976320 -173109212 - LTR38-int LTR ERV1 -7 1779 1361 3307 53 2 0 chr5 29976320 29976731 -173108801 + L1PA5 LINE L1 5740 6151 -3 5802 187 50 33 chr5 29976731 29977793 -173107739 - LTR38-int LTR ERV1 -425 1361 284 551 140 119 0 chr5 29978003 29978146 -173107386 - AluYa8 SINE Alu -150 160 1 325 323 128 5 chr5 29978261 29978456 -173107076 - MLT1J LTR MaLR -2 509 291 40 59 0 0 chr5 29978631 29978699 -173106833 + AT_rich Low_complexity Low_complexity 1 68 0 182 37 37 0 chr5 29979088 29979115 -173106417 + (TC)n Simple_repeat Simple_repeat 1 28 0 342 115 0 0 chr5 29979318 29979370 -173106162 + (TG)n Simple_repeat Simple_repeat 1 52 0 2209 148 11 0 chr5 29979548 29979925 -173105607 - L1PA13 LINE L1 0 6163 5783 856 251 103 14 chr5 29980818 29981109 -173104423 + L1ME LINE L1 4034 4350 -1796 1434 247 106 39 chr5 29981157 29981903 -173103629 + L1ME LINE L1 4931 5720 -446 1600 189 0 11 chr5 29981909 29982190 -173103342 - AluJb SINE Alu -34 278 1 839 64 0 0 chr5 29982481 29982590 -173102942 - L1PA5 LINE L1 0 6154 6046 479 17 17 0 chr5 29983349 29983409 -173102123 + (CA)n Simple_repeat Simple_repeat 1 61 0 1193 284 113 21 chr5 29983640 29984250 -173101282 - L2 LINE L2 -499 2815 2150 25 75 0 0 chr5 29984373 29984426 -173101106 + AT_rich Low_complexity Low_complexity 1 53 0 192 344 169 31 chr5 29984512 29984672 -173100860 - MIR3 SINE MIR -15 193 12 22 70 0 0 chr5 29984958 29985001 -173100531 + AT_rich Low_complexity Low_complexity 1 43 0 459 0 0 0 chr5 29985524 29985575 -173099957 + (CA)n Simple_repeat Simple_repeat 2 52 0 1539 198 0 3 chr5 29985683 29985966 -173099566 + AluJb SINE Alu 1 282 -30 338 214 12 24 chr5 29986033 29986117 -173099415 - L1MB1 LINE L1 -55 6134 6052 * 906 115 33 123 chr5 29986112 29986356 -173099176 + L1MA10 LINE L1 6111 6332 -2 21 0 0 0 chr5 29986737 29986758 -173098774 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr5 29987573 29987603 -173097929 + AT_rich Low_complexity Low_complexity 1 30 0 426 136 25 74 chr5 29989334 29989415 -173096117 - LTR38-int LTR ERV1 -1708 78 2 1558 285 45 24 chr5 29989429 29989962 -173095570 - LTR38 LTR ERV1 -12 544 1 315 253 40 53 chr5 29990021 29990171 -173095361 - L1M4 LINE L1 -3096 3050 2903 368 323 154 18 chr5 29990285 29990622 -173094910 + L1M4 LINE L1 4683 5065 -1081 2226 77 40 7 chr5 29992877 29993177 -173092355 + AluY SINE Alu 1 310 -1 6265 126 23 29 chr5 29993572 29994649 -173090883 - MER11C LTR ERVK 0 1071 1 355 242 42 0 chr5 29994748 29994843 -173090689 - L1MA10 LINE L1 -11 6323 6225 2428 63 0 0 chr5 29995092 29995391 -173090141 + AluY SINE Alu 1 299 -12 301 334 52 83 chr5 29995459 29995866 -173089666 - L1MB1 LINE L1 -2005 5803 5410 393 353 56 24 chr5 29995930 29996179 -173089353 + L2 LINE L2 3056 3312 -1 23 78 0 0 chr5 29998497 29998548 -173086984 + AT_rich Low_complexity Low_complexity 1 51 0 283 286 20 0 chr5 29999159 29999301 -173086231 + (TA)n Simple_repeat Simple_repeat 1 144 0 22 0 0 0 chr5 30000775 30000797 -173084735 + AT_rich Low_complexity Low_complexity 1 22 0 2400 36 0 0 chr5 30001369 30001686 -173083846 - AluY SINE Alu 0 317 1 24 0 0 0 chr5 30001882 30001906 -173083626 + AT_rich Low_complexity Low_complexity 1 24 0 445 284 119 37 chr5 30002053 30002380 -173083152 - L1MDa LINE L1 -2792 3423 3070 1505 210 35 35 chr5 30002381 30002752 -173082780 + MLT1A2 LTR MaLR 4 374 0 351 263 45 8 chr5 30002781 30002914 -173082618 - L1MDa LINE L1 -3147 3068 2931 277 336 105 0 chr5 30003064 30003293 -173082239 - L1MDa LINE L1 -3783 2432 2180 2324 66 10 7 chr5 30003422 30003723 -173081809 + AluY SINE Alu 1 302 -9 301 300 67 45 chr5 30004034 30004628 -173080904 - L1MDa LINE L1 -4571 1644 1072 21 0 0 0 chr5 30006103 30006124 -173079408 + AT_rich Low_complexity Low_complexity 1 21 0 2175 56 11 3 chr5 30006130 30006415 -173079117 + AluY SINE Alu 1 287 -24 564 29 0 0 chr5 30006418 30006488 -173079044 + (TAAAA)n Simple_repeat Simple_repeat 2 71 0 300 211 0 0 chr5 30006745 30006802 -173078730 - L1MC4 LINE L1 -1338 6704 6648 1458 197 14 24 chr5 30006943 30007268 -173078264 - AluJb SINE Alu 0 312 1 234 228 38 25 chr5 30008806 30008885 -173076647 - MER116 DNA Mariner 0 80 1 351 351 119 49 chr5 30010114 30010584 -173074948 + LTR67 LTR ERVL 8 510 -47 1840 140 4 4 chr5 30010638 30010917 -173074615 + AluSx SINE Alu 3 281 -31 254 309 60 24 chr5 30011350 30011518 -173074014 + ERVL LTR ERVL 508 681 -5083 995 254 23 0 chr5 30011896 30012113 -173073419 - MER58A DNA MER1_type -1 223 2 311 302 9 17 chr5 30012818 30012934 -173072598 + ERVL LTR ERVL 2242 2356 -3408 234 222 0 0 chr5 30013238 30013292 -173072240 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 225 0 0 0 chr5 30013324 30013349 -173072183 + (CA)n Simple_repeat Simple_repeat 2 26 0 249 57 0 0 chr5 30013349 30013384 -173072148 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 325 345 0 0 chr5 30013625 30013735 -173071797 + ERVL LTR ERVL 2977 3086 -2568 203 255 0 161 chr5 30013888 30014037 -173071495 + L2 LINE L2 3171 3295 -18 * 662 382 35 39 chr5 30014017 30014618 -173070914 - L2 LINE L2 -157 3156 2560 219 358 6 25 chr5 30014623 30014785 -173070747 + (TGG)n Simple_repeat Simple_repeat 2 160 0 310 282 94 0 chr5 30014796 30014913 -173070619 + MIR SINE MIR 127 254 -8 271 331 58 8 chr5 30016400 30016521 -173069011 + MIR SINE MIR 5 131 -131 25 51 0 0 chr5 30016675 30016714 -173068818 + AT_rich Low_complexity Low_complexity 1 39 0 27 49 0 0 chr5 30017716 30017757 -173067775 + AT_rich Low_complexity Low_complexity 1 41 0 189 264 0 0 chr5 30018049 30018121 -173067411 + GA-rich Low_complexity Low_complexity 1 72 0 273 174 0 54 chr5 30018788 30018880 -173066652 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 214 263 26 13 chr5 30019128 30019204 -173066328 + (TTTA)n Simple_repeat Simple_repeat 1 77 0 18247 77 5 1 chr5 30019613 30022034 -173063498 + L1P LINE L1 1 2431 -3715 2177 54 0 4 chr5 30022050 30022328 -173063204 + L1PA5 LINE L1 5878 6154 0 316 202 24 48 chr5 30022353 30022437 -173063095 + L2 LINE L2 3190 3271 -1 405 282 101 7 chr5 30022539 30022688 -173062844 + MIR SINE MIR 4 166 -96 25 0 0 0 chr5 30023653 30023678 -173061854 + AT_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr5 30024258 30024300 -173061232 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr5 30024743 30024778 -173060754 + AT_rich Low_complexity Low_complexity 1 35 0 1498 272 76 18 chr5 30024865 30025937 -173059595 - L1ME3 LINE L1 -222 5940 4799 716 252 79 14 chr5 30025958 30026236 -173059296 - L1ME3 LINE L1 -1518 4628 4333 333 337 134 18 chr5 30026342 30026618 -173058914 + L1ME3A LINE L1 5578 5885 -285 729 191 64 12 chr5 30027955 30028128 -173057404 + L1MA9 LINE L1 6131 6312 0 269 286 8 17 chr5 30029209 30029328 -173056204 + (TA)n Simple_repeat Simple_repeat 2 119 0 431 78 16 0 chr5 30029328 30029392 -173056140 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 398 320 20 34 chr5 30029476 30029623 -173055909 - MIR SINE MIR -113 149 5 18842 193 32 12 chr5 30030849 30035202 -173050330 + L1MA3 LINE L1 13 4457 -3108 6368 146 11 19 chr5 30035191 30036650 -173048882 + L1MA3 LINE L1 6281 7723 -1 * 23 68 0 0 chr5 30036910 30036954 -173048578 + AT_rich Low_complexity Low_complexity 1 44 0 5672 79 4 1 chr5 30036958 30037707 -173047825 - L1PA7 LINE L1 -3 6151 5401 1369 251 24 46 chr5 30038244 30038745 -173046787 + MLT1D LTR MaLR 16 505 0 25 83 0 0 chr5 30038880 30038940 -173046592 + AT_rich Low_complexity Low_complexity 1 60 0 24 53 0 0 chr5 30039037 30039075 -173046457 + AT_rich Low_complexity Low_complexity 1 38 0 417 248 39 26 chr5 30039233 30039386 -173046146 - L1ME1 LINE L1 -5 6161 6007 207 69 0 0 chr5 30039464 30039493 -173046039 + (TG)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr5 30039723 30039753 -173045779 + AT_rich Low_complexity Low_complexity 1 30 0 383 235 30 18 chr5 30040291 30040457 -173045075 + (TA)n Simple_repeat Simple_repeat 2 169 0 218 173 40 40 chr5 30041859 30041934 -173043598 + L2 LINE L2 2831 2905 -367 183 310 123 37 chr5 30042653 30042840 -173042692 + MIR SINE MIR 60 262 0 249 417 11 0 chr5 30043510 30043685 -173041847 + L2 LINE L2 2496 2672 -642 240 111 0 0 chr5 30043708 30043744 -173041788 + (T)n Simple_repeat Simple_repeat 1 36 0 516 178 90 140 chr5 30043744 30044087 -173041445 - LTR7 LTR ERV1 -38 412 87 1324 81 47 8 chr5 30044089 30044323 -173041209 + SVA Other Other 455 697 -689 700 139 0 0 chr5 30044351 30044459 -173041073 + AluSq/x SINE Alu 1 108 -205 228 35 0 0 chr5 30044471 30044500 -173041032 + (CCAA)n Simple_repeat Simple_repeat 1 29 0 202 365 0 0 chr5 30044540 30044614 -173040918 + CT-rich Low_complexity Low_complexity 2 75 0 335 338 132 64 chr5 30044971 30045772 -173039760 + L1 LINE L1 535 1390 -5459 * 348 286 89 125 chr5 30045426 30046257 -173039275 - L1M2 LINE L1 -5442 1407 607 240 178 0 0 chr5 30047033 30047078 -173038454 + SUBTEL_sa Satellite Satellite 59 103 -71 21 57 0 0 chr5 30048487 30048522 -173037010 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr5 30049528 30049563 -173035969 + AT_rich Low_complexity Low_complexity 1 35 0 566 302 23 23 chr5 30049583 30049798 -173035734 - MER20 DNA MER1_type -1 218 4 311 288 70 23 chr5 30049934 30050149 -173035383 + L1 LINE L1 5080 5304 -1544 312 295 39 0 chr5 30050177 30050255 -173035277 + L1MCa LINE L1 2 82 -6777 775 179 90 4 chr5 30050283 30050517 -173035015 + L1MCa LINE L1 2745 2998 -3959 1402 326 5 29 chr5 30050517 30051272 -173034260 + L1M4 LINE L1 3718 4454 -1692 400 331 39 6 chr5 30051605 30051783 -173033749 - HERVL LTR ERVL -1331 4433 4250 470 252 104 56 chr5 30051819 30052123 -173033409 - HERVL LTR ERVL -1337 4148 3831 652 196 85 13 chr5 30052157 30052310 -173033222 + MER20 DNA MER1_type 55 218 -1 2097 157 11 11 chr5 30053061 30053436 -173032096 - THE1C LTR MaLR 0 375 1 26 30 0 0 chr5 30053505 30053538 -173031994 + AT_rich Low_complexity Low_complexity 1 33 0 180 375 14 14 chr5 30054058 30054130 -173031402 - L2 LINE L2 -31 3282 3211 279 301 136 0 chr5 30054191 30054294 -173031238 + MER5C DNA MER1_type 8 124 -200 23 68 0 0 chr5 30054439 30054483 -173031049 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr5 30055249 30055275 -173030257 + AT_rich Low_complexity Low_complexity 1 26 0 30 45 0 0 chr5 30055493 30055537 -173029995 + AT_rich Low_complexity Low_complexity 1 44 0 744 68 17 8 chr5 30057106 30057223 -173028309 + (GAAA)n Simple_repeat Simple_repeat 2 119 0 183 261 0 0 chr5 30057796 30057842 -173027690 + L3b LINE CR1 1536 1581 -2 22 56 0 0 chr5 30058013 30058049 -173027483 + AT_rich Low_complexity Low_complexity 1 36 0 198 103 0 0 chr5 30058239 30058268 -173027264 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 285 333 37 15 chr5 30058638 30058773 -173026759 - MIR SINE MIR -34 228 91 22 56 0 0 chr5 30058798 30058834 -173026698 + AT_rich Low_complexity Low_complexity 1 36 0 1224 195 70 8 chr5 30060610 30060851 -173024681 - MSTB LTR MaLR 0 426 171 4352 210 110 4 chr5 30060856 30061784 -173023748 - MSTB-int LTR MaLR -625 1026 1 2275 190 17 9 chr5 30061784 30062205 -173023327 - MSTB LTR MaLR 0 426 3 482 108 12 0 chr5 30063122 30063205 -173022327 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 2145 125 0 3 chr5 30063863 30064174 -173021358 - AluSx SINE Alu -2 310 1 335 264 23 0 chr5 30064447 30064534 -173020998 + L1MC4 LINE L1 6614 6702 -1340 183 186 0 0 chr5 30064921 30064964 -173020568 + (TA)n Simple_repeat Simple_repeat 1 43 0 2012 131 0 7 chr5 30065007 30065298 -173020234 - AluSx SINE Alu -8 304 16 1151 238 38 3 chr5 30065741 30066031 -173019501 + AluJo SINE Alu 2 301 -1 346 246 24 16 chr5 30066439 30066565 -173018967 + (TA)n Simple_repeat Simple_repeat 1 127 0 235 296 23 0 chr5 30066565 30066653 -173018879 - L1MC4 LINE L1 -1339 6703 6614 222 209 23 0 chr5 30066657 30066700 -173018832 + GA-rich Low_complexity Low_complexity 1 44 0 704 264 0 28 chr5 30066713 30066891 -173018641 - MLT2C2 LTR ERVL -89 375 203 310 138 0 17 chr5 30066912 30066970 -173018562 - MLT2C2 LTR ERVL -407 57 1 31 58 0 0 chr5 30067503 30067555 -173017977 + AT_rich Low_complexity Low_complexity 1 52 0 2240 83 0 17 chr5 30067875 30068177 -173017355 + AluY SINE Alu 1 297 -14 29 47 0 0 chr5 30068378 30068421 -173017111 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr5 30068446 30068467 -173017065 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr5 30068505 30068528 -173017004 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr5 30069146 30069174 -173016358 + AT_rich Low_complexity Low_complexity 1 28 0 205 214 0 0 chr5 30069740 30069782 -173015750 - L2 LINE L2 0 3313 3272 265 214 56 0 chr5 30069814 30069903 -173015629 + (TCTA)n Simple_repeat Simple_repeat 1 94 0 3472 218 44 36 chr5 30071276 30072075 -173013457 - L1MB4 LINE L1 -1 6415 5592 2273 111 0 0 chr5 30072075 30072381 -173013151 - AluSg SINE Alu -4 306 1 3472 218 44 36 chr5 30072381 30072863 -173012669 - L1MB4 LINE L1 -824 5592 5115 972 265 42 11 chr5 30072874 30073233 -173012299 - L1MB4 LINE L1 -3594 2788 2419 2818 244 77 57 chr5 30073302 30074491 -173011041 - L1MB4 LINE L1 -4480 1904 693 28 71 0 0 chr5 30077540 30077596 -173007936 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr5 30077839 30077861 -173007671 + AT_rich Low_complexity Low_complexity 1 22 0 1762 114 9 82 chr5 30077864 30078180 -173007352 - AluSx SINE Alu -19 293 1 198 293 35 0 chr5 30078194 30078252 -173007280 - L2 LINE L2 -62 3251 3192 261 357 54 36 chr5 30078290 30078458 -173007074 - L2 LINE L2 -259 3054 2884 21 82 0 0 chr5 30078471 30078520 -173007012 + AT_rich Low_complexity Low_complexity 1 49 0 2082 102 3 0 chr5 30078833 30079116 -173006416 + AluY SINE Alu 1 284 -27 423 0 0 0 chr5 30079116 30079163 -173006369 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr5 30079224 30079252 -173006280 + AT_rich Low_complexity Low_complexity 1 28 0 195 318 35 75 chr5 30079302 30079475 -173006057 - L2 LINE L2 -212 3060 2895 24 32 0 0 chr5 30079513 30079544 -173005988 + AT_rich Low_complexity Low_complexity 1 31 0 659 236 99 81 chr5 30079625 30079947 -173005585 - L1ME2 LINE L1 -1 6163 5836 1696 287 63 39 chr5 30079950 30080121 -173005411 - L1MEc LINE L1 -4242 2154 1989 1594 70 124 77 chr5 30080121 30080380 -173005152 + AluY SINE Alu 28 298 -13 1696 287 63 39 chr5 30080380 30081076 -173004456 - L1MEc LINE L1 -4407 1989 1266 4814 171 24 21 chr5 30081083 30082387 -173003145 - L1PB3 LINE L1 -4 6866 5554 638 243 0 29 chr5 30082392 30082602 -173002930 - L1PB3 LINE L1 -1713 5149 4946 1992 163 45 59 chr5 30082620 30083100 -173002432 + MLT2A2 LTR ERVL 1 500 -54 261 119 0 0 chr5 30083104 30083146 -173002386 + (TA)n Simple_repeat Simple_repeat 1 42 0 552 203 90 15 chr5 30083146 30083279 -173002253 - L1ME2 LINE L1 -29 6135 5993 207 232 18 0 chr5 30083282 30083338 -173002194 + (TA)n Simple_repeat Simple_repeat 2 58 0 736 171 35 31 chr5 30083340 30083511 -173002021 - MLT2A2 LTR ERVL -35 504 293 341 111 0 0 chr5 30083543 30083597 -173001935 + MLT2A1 LTR ERVL 391 444 0 7204 224 15 22 chr5 30083600 30084637 -173000895 - L1PB3 LINE L1 -1923 4939 3919 1751 151 70 25 chr5 30084637 30084994 -173000538 - THE1C LTR MaLR -2 373 1 7204 224 15 22 chr5 30084994 30085865 -172999667 - L1PB3 LINE L1 -2943 3919 3044 1749 194 126 8 chr5 30085880 30086252 -172999280 - MSTA LTR MaLR -12 416 1 8315 168 11 48 chr5 30086252 30087873 -172997659 - MSTA-int LTR MaLR 0 1580 21 1781 163 127 18 chr5 30087885 30088271 -172997261 - MSTA LTR MaLR 0 428 1 5265 240 62 21 chr5 30088271 30092094 -172993438 - L1PB3 LINE L1 -3814 3048 3 1997 157 7 0 chr5 30092243 30092549 -172992983 + AluSx SINE Alu 2 309 -3 268 321 97 24 chr5 30093310 30093475 -172992057 + L2 LINE L2 2998 3174 -139 21 0 0 0 chr5 30093489 30093510 -172992022 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr5 30094809 30094851 -172990681 + AT_rich Low_complexity Low_complexity 1 42 0 25 51 0 0 chr5 30096069 30096108 -172989424 + AT_rich Low_complexity Low_complexity 1 39 0 10918 34 0 0 chr5 30097216 30099308 -172986224 + L1PA3 LINE L1 4062 6155 0 29 70 0 0 chr5 30099362 30099419 -172986113 + AT_rich Low_complexity Low_complexity 1 57 0 1651 219 38 14 chr5 30099419 30099785 -172985747 + Tigger1 DNA MER2_type 2 376 -2042 6698 141 25 7 chr5 30099789 30100175 -172985357 + Tigger1 DNA MER2_type 792 1170 -1248 1874 148 24 0 chr5 30100175 30100466 -172985066 + AluSx SINE Alu 1 298 -14 6698 141 25 7 chr5 30100466 30101156 -172984376 + Tigger1 DNA MER2_type 1170 1887 -531 2017 234 18 24 chr5 30101167 30101715 -172983817 + L1 LINE L1 3939 4483 -1663 25 51 0 0 chr5 30101766 30101805 -172983727 + AT_rich Low_complexity Low_complexity 1 39 0 267 286 94 72 chr5 30101808 30102084 -172983448 + HAL1 LINE L1 1458 1739 -768 3129 187 26 47 chr5 30102304 30102871 -172982661 + L1MC1 LINE L1 5613 6163 -170 2009 93 0 18 chr5 30102871 30103149 -172982383 + AluSg SINE Alu 35 307 -3 3129 187 26 47 chr5 30103149 30103299 -172982233 + L1MC1 LINE L1 6163 6315 -18 34 55 0 0 chr5 30104292 30104347 -172981185 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr5 30104811 30104832 -172980700 + AT_rich Low_complexity Low_complexity 1 21 0 204 125 0 0 chr5 30105149 30105181 -172980351 + (TA)n Simple_repeat Simple_repeat 2 33 0 461 216 164 8 chr5 30105895 30106029 -172979503 + MER77 LTR ERV1 444 598 -7 3104 245 33 31 chr5 30106424 30107009 -172978523 - L1MB8 LINE L1 0 6178 5596 1642 175 34 3 chr5 30107009 30107300 -172978232 - AluJb SINE Alu -10 302 3 3104 245 33 31 chr5 30107300 30108335 -172977197 - L1MB8 LINE L1 -582 5596 4557 24 0 0 0 chr5 30108877 30108901 -172976631 + AT_rich Low_complexity Low_complexity 1 24 0 325 316 82 20 chr5 30109497 30109693 -172975839 - HERVL LTR ERVL -3107 2547 2340 438 337 36 5 chr5 30109696 30109889 -172975643 + MIR SINE MIR 7 205 -57 1844 110 0 8 chr5 30111042 30111305 -172974227 + AluSx SINE Alu 1 261 -51 189 0 0 0 chr5 30111959 30111980 -172973552 + (A)n Simple_repeat Simple_repeat 1 21 0 456 282 90 116 chr5 30112601 30113586 -172971946 + L1MEc LINE L1 803 1762 -4634 2577 236 60 27 chr5 30114388 30115054 -172970478 - MER76 LTR ERV 0 688 1 1559 177 46 7 chr5 30115082 30115364 -172970168 + AluSx SINE Alu 7 299 -13 417 311 259 23 chr5 30115389 30115830 -172969702 + HAL1 LINE L1 1023 1567 -940 1878 147 11 7 chr5 30116080 30116500 -172969032 + L1PB3 LINE L1 5262 5778 -376 227 271 0 0 chr5 30116502 30116550 -172968982 + (CATA)n Simple_repeat Simple_repeat 3 50 0 1904 194 3 0 chr5 30116551 30116911 -172968621 + L1PB3 LINE L1 5789 6149 -5 766 293 176 29 chr5 30117192 30117515 -172968017 + HAL1 LINE L1 1624 1898 -609 983 248 94 49 chr5 30117515 30117962 -172967570 + MLT1C LTR MaLR 1 467 0 766 293 176 29 chr5 30117962 30118405 -172967127 + HAL1 LINE L1 1898 2503 -4 22 0 0 0 chr5 30119322 30119344 -172966188 + AT_rich Low_complexity Low_complexity 1 22 0 5539 125 21 42 chr5 30119423 30120389 -172965143 - L1MA2 LINE L1 -7 6297 5353 476 267 80 53 chr5 30120845 30121070 -172964462 + MIR SINE MIR 32 262 0 2060 183 21 0 chr5 30121356 30121738 -172963794 - MLT1B LTR MaLR 0 390 1 1618 185 18 110 chr5 30121780 30122233 -172963299 - MLT2D LTR ERVL 0 553 143 1235 147 36 9 chr5 30122299 30122420 -172963112 - Ricksha DNA DNA -2772 474 348 17508 179 22 16 chr5 30122420 30123014 -172962518 - ERVL-D LTR ERVL -2 5762 5173 2391 106 35 54 chr5 30123014 30123420 -172962112 + MER48 LTR ERV1 1 398 0 17508 179 22 16 chr5 30123420 30125990 -172959542 - ERVL-D LTR ERVL -591 5173 2579 19988 37 0 0 chr5 30125990 30128452 -172957080 - L1P LINE L1 -2285 3861 1399 7992 38 0 1 chr5 30128442 30129412 -172956120 - L1P LINE L1 -1313 4833 3865 * 7617 22 0 0 chr5 30129412 30130812 -172954720 + L1PA2 LINE L1 4770 6169 0 1249 75 0 0 chr5 30130812 30130971 -172954561 - ERVL-D LTR ERVL -3181 2583 2425 230 368 0 0 chr5 30131209 30131285 -172954247 - MIR3 SINE MIR -18 190 115 23 78 0 0 chr5 30132092 30132143 -172953389 + AT_rich Low_complexity Low_complexity 1 51 0 36 23 0 0 chr5 30132290 30132333 -172953199 + AT_rich Low_complexity Low_complexity 1 43 0 2318 45 52 3 chr5 30133147 30133436 -172952096 + AluY SINE Alu 1 303 -8 203 291 0 0 chr5 30133710 30133765 -172951767 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr5 30135668 30135689 -172949843 + AT_rich Low_complexity Low_complexity 1 21 0 704 290 76 37 chr5 30135936 30136264 -172949268 - MER2 DNA MER2_type -3 342 2 1437 275 18 10 chr5 30137013 30137406 -172948126 + MSTD LTR MaLR 1 396 0 5598 264 63 28 chr5 30137408 30139083 -172946449 + MSTD-int LTR MaLR 2 1735 0 1232 249 78 19 chr5 30139083 30139457 -172946075 + MSTD LTR MaLR 1 396 0 22 0 0 0 chr5 30139862 30139884 -172945648 + AT_rich Low_complexity Low_complexity 1 22 0 2186 116 0 0 chr5 30139937 30140231 -172945301 + AluY SINE Alu 1 294 -17 33 25 0 0 chr5 30140679 30140719 -172944813 + AT_rich Low_complexity Low_complexity 1 40 0 24 67 0 0 chr5 30141489 30141534 -172943998 + AT_rich Low_complexity Low_complexity 1 45 0 1863 141 83 3 chr5 30141741 30142068 -172943464 + THE1C LTR MaLR 23 375 0 6620 127 225 43 chr5 30142068 30143404 -172942128 + THE1C-int LTR MaLR 1 1578 -2 1790 147 76 17 chr5 30143406 30143760 -172941772 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr5 30144107 30144131 -172941401 + AT_rich Low_complexity Low_complexity 1 24 0 307 252 126 17 chr5 30144190 30144309 -172941223 + L2 LINE L2 3178 3309 -4 230 247 13 39 chr5 30144393 30144470 -172941062 + GA-rich Low_complexity Low_complexity 4 78 0 28 0 0 0 chr5 30145292 30145320 -172940212 + AT_rich Low_complexity Low_complexity 1 28 0 4992 201 32 7 chr5 30145327 30146435 -172939097 + L1P5 LINE L1 4061 5225 -931 194 0 0 37 chr5 30146435 30146462 -172939070 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 4992 201 32 7 chr5 30146462 30147027 -172938505 + L1P5 LINE L1 5225 5775 -381 220 154 62 31 chr5 30148579 30148644 -172936888 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 27 29 0 0 chr5 30148702 30148736 -172936796 + AT_rich Low_complexity Low_complexity 1 34 0 201 175 0 0 chr5 30148817 30148857 -172936675 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 1262 163 262 23 chr5 30149370 30149714 -172935818 - MSTA LTR MaLR 0 428 3 8607 189 16 9 chr5 30149716 30151355 -172934177 - MSTA-int LTR MaLR 0 1651 1 2076 159 82 20 chr5 30151355 30151758 -172933774 - MSTA LTR MaLR 0 428 1 1657 217 133 5 chr5 30152688 30153117 -172932415 + MLT1D LTR MaLR 3 486 -19 292 331 95 25 chr5 30153513 30153755 -172931777 + MLT1H LTR MaLR 286 544 -5 295 238 0 38 chr5 30154049 30154129 -172931403 - MIR SINE MIR 0 262 186 2163 118 3 0 chr5 30154141 30154438 -172931094 - AluSx SINE Alu -14 298 1 1111 234 151 34 chr5 30154827 30155245 -172930287 + MLT1C LTR MaLR 1 467 0 647 148 0 8 chr5 30155297 30155419 -172930113 + (TCC)n Simple_repeat Simple_repeat 1 121 0 2127 109 3 32 chr5 30155419 30155730 -172929802 - AluSq SINE Alu -11 302 1 2020 206 52 82 chr5 30156110 30156741 -172928791 + LTR9 LTR ERV1 1 612 0 23 0 0 0 chr5 30157893 30157916 -172927616 + AT_rich Low_complexity Low_complexity 1 23 0 201 158 0 0 chr5 30158042 30158080 -172927452 + A-rich Low_complexity Low_complexity 1 38 0 28 71 0 0 chr5 30158293 30158349 -172927183 + AT_rich Low_complexity Low_complexity 1 56 0 2155 217 29 3 chr5 30159004 30159540 -172925992 - L1MB2 LINE L1 -10 6161 5490 2200 113 0 7 chr5 30159540 30159840 -172925692 - AluSg SINE Alu -12 298 1 2155 217 29 3 chr5 30159840 30159958 -172925574 - L1MB2 LINE L1 -681 5490 5377 183 239 0 0 chr5 30160322 30160368 -172925164 + (TA)n Simple_repeat Simple_repeat 2 47 0 219 114 0 0 chr5 30160815 30160850 -172924682 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 54 0 0 chr5 30161890 30161927 -172923605 + AT_rich Low_complexity Low_complexity 1 37 0 550 290 30 71 chr5 30162229 30162498 -172923034 + L2 LINE L2 1923 2180 -1134 1068 143 23 97 chr5 30165197 30165264 -172920268 + Tigger2 DNA MER2_type 2479 2549 -169 1791 139 0 73 chr5 30165264 30165580 -172919952 + AluJb SINE Alu 1 293 -19 1068 143 23 97 chr5 30165580 30165771 -172919761 + Tigger2 DNA MER2_type 2549 2718 0 597 282 67 62 chr5 30165774 30166132 -172919400 + L2 LINE L2 2498 2857 -457 21 82 0 0 chr5 30167732 30167781 -172917751 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr5 30167934 30167969 -172917563 + AT_rich Low_complexity Low_complexity 1 35 0 2120 48 0 8 chr5 30168306 30168574 -172916958 - L1PA7 LINE L1 -1 6153 5888 42339 37 22 1 chr5 30168729 30174752 -172910780 - L1PA2 LINE L1 -2 6153 1 3340 87 5 143 chr5 30174753 30175418 -172910114 - L1PA7 LINE L1 -253 5902 5330 380 37 19 0 chr5 30175616 30175670 -172909862 + (TTTTG)n Simple_repeat Simple_repeat 3 57 0 366 271 0 70 chr5 30175745 30175874 -172909658 - L1MC4 LINE L1 -1309 6733 6614 993 106 0 0 chr5 30175883 30176063 -172909469 + (TA)n Simple_repeat Simple_repeat 1 180 0 312 284 23 0 chr5 30176066 30176154 -172909378 - L1MC4 LINE L1 -1339 6703 6614 270 143 0 0 chr5 30176101 30176164 -172909368 + (TA)n Simple_repeat Simple_repeat 2 64 0 * 346 255 0 43 chr5 30176166 30176260 -172909272 - L1MC4 LINE L1 -1339 6703 6614 264 148 0 0 chr5 30176263 30176324 -172909208 + (TA)n Simple_repeat Simple_repeat 2 62 0 372 270 0 0 chr5 30176327 30176416 -172909116 - L1MC4 LINE L1 -1340 6702 6614 232 138 69 0 chr5 30176416 30176474 -172909058 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 348 267 47 0 chr5 30176474 30176560 -172908972 + L1MC4 LINE L1 6614 6703 -1339 227 375 47 63 chr5 30176663 30176964 -172908568 - L2 LINE L2 -1157 2157 1862 2135 129 0 3 chr5 30177084 30177436 -172908096 + AluSg SINE Alu 1 310 0 1559 238 42 27 chr5 30177845 30178295 -172907237 + MLT1C LTR MaLR 11 467 0 229 343 125 33 chr5 30178297 30178664 -172906868 - L2 LINE L2 -2203 1111 711 483 296 17 29 chr5 30179041 30179213 -172906319 + L3 LINE CR1 636 805 -772 4674 216 45 1 chr5 30180030 30181297 -172904235 - L1MC2 LINE L1 -9 6335 5016 880 236 45 63 chr5 30181303 30181637 -172903895 + L1MD3 LINE L1 28 355 -6071 1184 162 37 21 chr5 30181655 30182020 -172903512 + L1MD3 LINE L1 1489 1946 -4480 512 216 72 18 chr5 30182016 30182183 -172903349 - L1MC5 LINE L1 -769 7192 7017 * 532 213 15 7 chr5 30182206 30182342 -172903190 + L1MD3 LINE L1 4201 4337 -2089 * 950 276 129 11 chr5 30182332 30183151 -172902381 + L1MD3 LINE L1 5491 6442 -4 243 0 0 0 chr5 30183160 30183187 -172902345 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 228 200 0 0 chr5 30183949 30183999 -172901533 + CT-rich Low_complexity Low_complexity 1 50 0 1017 214 61 36 chr5 30185191 30185631 -172899901 - L1M4 LINE L1 -2918 3228 2778 2883 244 29 37 chr5 30185666 30186574 -172898958 - MLT1-int LTR MaLR -244 1127 258 748 228 89 17 chr5 30186575 30186812 -172898720 - L1MC2 LINE L1 -53 6291 6038 237 291 43 35 chr5 30186885 30186970 -172898562 - HAL1b LINE L1 -751 597 509 2007 147 29 29 chr5 30186970 30187345 -172898187 - THE1C LTR MaLR 0 375 1 237 291 43 35 chr5 30187345 30187400 -172898132 - HAL1b LINE L1 -839 509 456 294 267 38 38 chr5 30188013 30188144 -172897388 - L1MC4 LINE L1 -21 8021 7891 219 69 0 0 chr5 30189020 30189049 -172896483 + (T)n Simple_repeat Simple_repeat 1 29 0 1942 201 40 81 chr5 30190721 30191299 -172894233 - MLT2B3 LTR ERVL 0 554 1 350 346 65 14 chr5 30192010 30192227 -172893305 + MLT1K LTR MaLR 199 426 -162 395 191 76 38 chr5 30192230 30192335 -172893197 + FLAM_A SINE Alu 22 130 -3 284 328 29 35 chr5 30192339 30192510 -172893022 + MLT1K LTR MaLR 417 586 -2 877 77 33 39 chr5 30193021 30193202 -172892330 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 833 132 24 6 chr5 30193218 30193385 -172892147 + GA-rich Low_complexity Low_complexity 3 172 0 198 103 0 0 chr5 30193407 30193436 -172892096 + (GGGGA)n Simple_repeat Simple_repeat 3 31 0 543 210 152 5 chr5 30194986 30195196 -172890336 + MLT1E2 LTR MaLR 73 298 -328 2311 219 16 14 chr5 30195214 30195716 -172889816 + MER67D LTR ERV1 10 512 -2 1115 224 103 4 chr5 30195742 30196014 -172889518 + MLT1E2 LTR MaLR 319 617 -9 1447 202 0 0 chr5 30196617 30196879 -172888653 + AluJb SINE Alu 24 285 -27 284 156 44 0 chr5 30196879 30196969 -172888563 + (TA)n Simple_repeat Simple_repeat 1 94 0 21 0 0 0 chr5 30198253 30198274 -172887258 + AT_rich Low_complexity Low_complexity 1 21 0 369 345 65 49 chr5 30198613 30198938 -172886594 - L2 LINE L2 -342 2972 2643 2467 63 0 0 chr5 30200363 30200663 -172884869 + AluY SINE Alu 1 300 -11 391 321 49 62 chr5 30202123 30202447 -172883085 - MLT1I LTR MaLR -5 404 85 413 149 0 23 chr5 30202914 30203001 -172882531 + (GGGGA)n Simple_repeat Simple_repeat 5 89 0 219 139 0 0 chr5 30203973 30204009 -172881523 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 2176 108 0 3 chr5 30204009 30204306 -172881226 - AluSq SINE Alu -17 296 1 232 296 68 30 chr5 30204525 30204657 -172880875 + L1ME LINE L1 5500 5636 -534 235 302 47 0 chr5 30204665 30204771 -172880761 + L1ME LINE L1 5714 5824 -346 1547 134 38 4 chr5 30204938 30205177 -172880355 + AluSg SINE Alu 42 288 -22 337 316 68 11 chr5 30205512 30205689 -172879843 + MIR SINE MIR 41 227 -35 29 84 0 0 chr5 30206835 30206906 -172878626 + AT_rich Low_complexity Low_complexity 1 71 0 24 53 0 0 chr5 30207180 30207218 -172878314 + AT_rich Low_complexity Low_complexity 1 38 0 238 302 66 97 chr5 30207888 30208146 -172877386 - L2 LINE L2 -837 2477 2228 556 367 31 8 chr5 30208286 30208542 -172876990 - MIR SINE MIR 0 262 1 256 182 57 0 chr5 30208684 30208772 -172876760 + CT-rich Low_complexity Low_complexity 2 94 0 518 280 0 32 chr5 30209804 30209988 -172875544 - MER3 DNA MER1_type -1 208 31 1471 191 87 48 chr5 30209988 30210515 -172875017 + MER67C LTR ERV1 1 514 0 8839 32 0 0 chr5 30212356 30214183 -172871349 - L1PA3 LINE L1 -5 6150 4324 22638 31 4 0 chr5 30214185 30216933 -172868599 + L1P LINE L1 1649 4407 -1739 969 323 187 28 chr5 30216943 30217837 -172867695 + L2 LINE L2 1256 2291 -1023 1781 184 34 6 chr5 30217837 30218191 -172867341 + MLT1A1 LTR MaLR 1 364 -1 186 43 0 0 chr5 30218216 30218239 -172867293 + (TTCTG)n Simple_repeat Simple_repeat 3 25 0 4951 29 5 0 chr5 30218239 30218831 -172866701 + L1PA4 LINE L1 5561 6155 0 1048 310 115 39 chr5 30219463 30220120 -172865412 + L2 LINE L2 2340 3041 -272 461 139 15 36 chr5 30220212 30220349 -172865183 + (TA)n Simple_repeat Simple_repeat 2 135 0 1775 171 0 31 chr5 30220568 30220890 -172864642 - AluJo SINE Alu 0 312 1 1451 191 101 42 chr5 30222016 30222085 -172863447 - MSTB1 LTR MaLR 0 432 368 1970 110 0 18 chr5 30222085 30222367 -172863165 + AluSc SINE Alu 1 277 -32 1451 191 101 42 chr5 30222367 30222705 -172862827 - MSTB1 LTR MaLR -64 368 1 204 40 0 0 chr5 30222889 30222914 -172862618 + (TG)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr5 30224091 30224114 -172861418 + (TG)n Simple_repeat Simple_repeat 2 24 0 379 314 16 43 chr5 30224234 30224422 -172861110 - MLT1I LTR MaLR -183 226 44 3936 83 63 3 chr5 30224523 30225091 -172860441 + LTR14B LTR ERVK 7 608 0 30 0 0 0 chr5 30225422 30225452 -172860080 + AT_rich Low_complexity Low_complexity 1 30 0 2095 115 3 0 chr5 30226530 30226818 -172858714 - AluSx SINE Alu -23 289 1 416 182 0 20 chr5 30226883 30226982 -172858550 + (TATATG)n Simple_repeat Simple_repeat 3 99 0 251 107 0 71 chr5 30226987 30227043 -172858489 - L1MC4 LINE L1 -1339 6703 6652 2361 90 3 0 chr5 30227708 30228019 -172857513 + AluSp SINE Alu 2 313 0 2173 108 0 0 chr5 30230995 30231281 -172854251 - AluSx SINE Alu -26 286 1 3746 77 8 6 chr5 30231772 30232293 -172853239 - L1MA1 LINE L1 -527 5775 5254 3161 105 29 25 chr5 30232312 30232825 -172852707 + L1MA1 LINE L1 5781 6295 -7 29 0 0 0 chr5 30232825 30232854 -172852678 + AT_rich Low_complexity Low_complexity 1 29 0 26 64 0 0 chr5 30235092 30235139 -172850393 + AT_rich Low_complexity Low_complexity 1 47 0 337 289 22 0 chr5 30236026 30236116 -172849416 - MIR SINE MIR -95 167 76 1157 154 37 15 chr5 30238546 30238750 -172846782 - MSTA LTR MaLR -10 418 211 1126 194 0 15 chr5 30238849 30239055 -172846477 - MSTA LTR MaLR -225 203 1 1593 175 25 62 chr5 30239905 30240306 -172845226 - L1 LINE L1 -789 5357 4972 198 0 0 0 chr5 30240316 30240338 -172845194 + (CATATA)n Simple_repeat Simple_repeat 3 24 0 2597 145 14 26 chr5 30240370 30240861 -172844671 + L1MA9 LINE L1 5828 6312 0 23 0 0 0 chr5 30240936 30240959 -172844573 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr5 30241614 30241646 -172843886 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr5 30241859 30241885 -172843647 + AT_rich Low_complexity Low_complexity 1 26 0 4259 96 3 5 chr5 30242124 30242731 -172842801 - L1PB1 LINE L1 -1 6150 5545 2235 193 73 5 chr5 30242731 30243322 -172842210 + L1P LINE L1 4735 5374 -777 1211 114 0 0 chr5 30243489 30243673 -172841859 - L1MA4 LINE L1 -8 6292 6109 30 0 0 0 chr5 30243821 30243851 -172841681 + AT_rich Low_complexity Low_complexity 1 30 0 422 295 62 53 chr5 30243970 30244197 -172841335 + MIR SINE MIR 34 262 0 300 291 0 12 chr5 30244820 30244906 -172840626 + L2 LINE L2 3227 3311 -2 1903 184 52 33 chr5 30245931 30246472 -172839060 - MLT2A2 LTR ERVL 0 554 4 430 321 14 69 chr5 30246533 30246810 -172838722 - MLT1J LTR MaLR -59 452 191 501 245 83 62 chr5 30246815 30247007 -172838525 + MSTD LTR MaLR 1 196 -169 1469 313 56 25 chr5 30247260 30247944 -172837588 + L2 LINE L2 1634 2338 -976 647 218 81 6 chr5 30248070 30248243 -172837289 + MSTD LTR MaLR 175 383 -2 367 281 56 56 chr5 30248256 30248434 -172837098 - MLT1J LTR MaLR -331 180 3 295 356 23 3 chr5 30248586 30248696 -172836836 + MIR SINE MIR 30 142 -66 27 81 0 0 chr5 30248960 30249022 -172836510 + AT_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chr5 30249053 30249074 -172836458 + AT_rich Low_complexity Low_complexity 1 21 0 1577 319 70 26 chr5 30249238 30249999 -172835533 - L2 LINE L2 -985 2329 1536 263 276 28 62 chr5 30250140 30250285 -172835247 - L2 LINE L2 -956 2358 2219 1959 144 0 3 chr5 30250542 30250854 -172834678 - AluSq SINE Alu 0 311 1 241 94 113 19 chr5 30252784 30252837 -172832695 + MLT1I LTR MaLR 326 383 -26 21 57 0 0 chr5 30253093 30253128 -172832404 + AT_rich Low_complexity Low_complexity 1 35 0 1349 57 6 0 chr5 30253624 30253800 -172831732 + L1PA4 LINE L1 5971 6147 -8 2457 102 43 0 chr5 30254229 30254603 -172830929 - L1PA10 LINE L1 0 6168 5779 654 67 34 0 chr5 30254603 30254692 -172830840 + L1P4 LINE L1 5554 5645 -523 813 200 14 81 chr5 30254837 30255047 -172830485 + AluJo SINE Alu 87 282 -30 312 27 0 0 chr5 30255059 30255096 -172830436 + (CA)n Simple_repeat Simple_repeat 1 37 0 1498 194 33 14 chr5 30255618 30255983 -172829549 - L1MA6 LINE L1 -11 6289 5918 34 24 0 0 chr5 30257011 30257052 -172828480 + AT_rich Low_complexity Low_complexity 1 41 0 23 78 0 0 chr5 30257230 30257281 -172828251 + AT_rich Low_complexity Low_complexity 1 51 0 391 234 88 58 chr5 30259051 30259256 -172826276 - L2 LINE L2 -793 2521 2311 425 318 87 0 chr5 30259715 30259888 -172825644 + LTR16A1 LTR ERVL 201 388 -69 5065 180 35 17 chr5 30259912 30261002 -172824530 - L1MA6 LINE L1 -1 6299 5190 2317 177 26 71 chr5 30261027 30261798 -172823734 - L1MA6 LINE L1 -464 5836 5111 2291 121 0 3 chr5 30261798 30262111 -172823421 + AluSx SINE Alu 1 312 0 2317 177 26 71 chr5 30262111 30262262 -172823270 - L1MA6 LINE L1 -1189 5111 4955 811 191 0 0 chr5 30262263 30262410 -172823122 + L1MA6 LINE L1 4801 4947 -1199 192 97 0 0 chr5 30263517 30263548 -172821984 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr5 30263659 30263690 -172821842 + AT_rich Low_complexity Low_complexity 1 31 0 223 184 20 51 chr5 30264401 30264499 -172821033 + (TA)n Simple_repeat Simple_repeat 1 95 0 1109 192 0 33 chr5 30264744 30264984 -172820548 + AluJb SINE Alu 78 309 -3 40 0 0 0 chr5 30266041 30266081 -172819451 + AT_rich Low_complexity Low_complexity 1 40 0 968 232 42 83 chr5 30266140 30266935 -172818597 + MER4C LTR ERV1 1 465 0 1782 188 53 8 chr5 30267308 30267665 -172817867 + MLT2D LTR ERVL 2 374 -40 350 267 23 12 chr5 30267672 30267844 -172817688 + (TA)n Simple_repeat Simple_repeat 2 175 0 189 147 0 0 chr5 30268477 30268511 -172817021 + (TG)n Simple_repeat Simple_repeat 2 35 0 24 96 0 0 chr5 30268827 30268900 -172816632 + AT_rich Low_complexity Low_complexity 1 73 0 927 245 7 114 chr5 30269198 30269611 -172815921 - MLT2B1 LTR ERVL -53 467 99 1239 211 70 29 chr5 30269627 30269939 -172815593 + MER67C LTR ERV1 79 403 -307 255 331 76 7 chr5 30269946 30270091 -172815441 + MER67D LTR ERV1 356 510 -4 2323 38 14 3 chr5 30270458 30270749 -172814783 - AluY SINE Alu -17 294 1 4195 224 16 1 chr5 30270980 30271844 -172813688 - L1M1 LINE L1 -6676 889 13 9623 48 10 0 chr5 30272273 30273767 -172811765 + L1P2 LINE L1 4152 5657 -498 14088 193 37 16 chr5 30273872 30277411 -172808121 + L1MA3 LINE L1 840 4457 -3108 6323 147 11 19 chr5 30277400 30278860 -172806672 + L1MA3 LINE L1 6281 7723 -1 * 23 68 0 0 chr5 30279123 30279167 -172806365 + AT_rich Low_complexity Low_complexity 1 44 0 5666 80 4 1 chr5 30279171 30279920 -172805612 - L1PA7 LINE L1 -3 6151 5401 1346 254 24 46 chr5 30280457 30280958 -172804574 + MLT1D LTR MaLR 16 505 0 25 83 0 0 chr5 30281093 30281153 -172804379 + AT_rich Low_complexity Low_complexity 1 60 0 298 207 24 18 chr5 30281844 30282018 -172803514 + (TA)n Simple_repeat Simple_repeat 1 175 0 23 33 0 0 chr5 30282556 30282586 -172802946 + AT_rich Low_complexity Low_complexity 1 30 0 207 69 0 0 chr5 30282815 30282844 -172802688 + (CA)n Simple_repeat Simple_repeat 2 30 0 402 248 39 26 chr5 30282922 30283075 -172802457 + L1ME1 LINE L1 6007 6161 -5 24 53 0 0 chr5 30283232 30283270 -172802262 + AT_rich Low_complexity Low_complexity 1 38 0 181 75 50 0 chr5 30283511 30283551 -172801981 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 367 205 46 7 chr5 30283551 30283702 -172801830 + (TA)n Simple_repeat Simple_repeat 1 157 0 3327 134 24 7 chr5 30283794 30284460 -172801072 + LTR1 LTR ERV1 17 785 0 2132 128 7 0 chr5 30284783 30285089 -172800443 - AluY SINE Alu -3 308 1 21 36 0 0 chr5 30285809 30285837 -172799695 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr5 30287136 30287166 -172798366 + AT_rich Low_complexity Low_complexity 1 30 0 347 66 0 82 chr5 30287458 30287519 -172798013 - MLT2A1 LTR ERVL 0 444 389 5513 156 50 21 chr5 30287537 30288608 -172796924 - HERVL-A1 LTR ERVL -155 5499 4399 * 17752 83 16 12 chr5 30288603 30291010 -172794522 - HERVL-A1 LTR ERVL -3238 2416 1 3121 78 32 7 chr5 30291010 30291058 -172794474 - MLT2A1 LTR ERVL 0 444 399 333 0 0 0 chr5 30291058 30291095 -172794437 + (CA)n Simple_repeat Simple_repeat 2 38 0 3121 78 32 7 chr5 30291095 30291479 -172794053 - MLT2A1 LTR ERVL -45 399 1 28 79 0 0 chr5 30292256 30292319 -172793213 + AT_rich Low_complexity Low_complexity 1 63 0 1987 121 39 0 chr5 30292849 30293131 -172792401 + AluSq SINE Alu 1 293 -20 423 0 0 0 chr5 30293272 30293319 -172792213 + (TG)n Simple_repeat Simple_repeat 2 48 0 2542 56 0 0 chr5 30294138 30294444 -172791088 + AluY SINE Alu 1 306 -5 241 277 138 44 chr5 30294975 30295134 -172790398 + L2 LINE L2 2918 3091 -181 22 0 0 0 chr5 30296591 30296613 -172788919 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr5 30296653 30296675 -172788857 + AT_rich Low_complexity Low_complexity 1 22 0 2122 264 45 65 chr5 30297507 30298584 -172786948 - L1M4c LINE L1 -4440 2385 1287 1998 149 3 0 chr5 30298584 30298880 -172786652 + AluSx SINE Alu 12 308 -4 2122 264 45 65 chr5 30298880 30299021 -172786511 - L1M4c LINE L1 -5538 1287 1145 1547 210 40 0 chr5 30299021 30299321 -172786211 + AluJo SINE Alu 1 312 0 2122 264 45 65 chr5 30299321 30299426 -172786106 - L1M4c LINE L1 -5680 1145 950 5909 92 13 2 chr5 30299439 30300791 -172784741 - L1PA8A LINE L1 -2 6129 4768 7057 133 23 3 chr5 30300792 30301939 -172783593 + L1PA8A LINE L1 3624 4793 -1353 360 261 31 77 chr5 30301933 30302128 -172783404 - L1M4c LINE L1 -5593 949 764 * 5600 251 36 10 chr5 30302237 30303578 -172781954 - ERVL-B3 LTR ERVL -4388 1376 1 2734 193 37 17 chr5 30303578 30303625 -172781907 - MLT2B3 LTR ERVL 0 554 509 459 0 0 0 chr5 30303625 30303676 -172781856 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 2734 193 37 17 chr5 30303676 30304168 -172781364 - MLT2B3 LTR ERVL -45 509 4 22 35 0 0 chr5 30304186 30304215 -172781317 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr5 30304298 30304322 -172781210 + AT_rich Low_complexity Low_complexity 1 24 0 935 81 22 0 chr5 30305941 30306077 -172779455 + L1PA10 LINE L1 6021 6159 -9 23 68 0 0 chr5 30306280 30306324 -172779208 + AT_rich Low_complexity Low_complexity 1 44 0 23 68 0 0 chr5 30306426 30306470 -172779062 + AT_rich Low_complexity Low_complexity 1 44 0 34664 70 14 1 chr5 30307405 30312013 -172773519 + L1P LINE L1 11 4675 -1471 5353 85 33 1 chr5 30312125 30312914 -172772618 - HERVL-A1 LTR ERVL -4840 814 1 2829 77 53 7 chr5 30312914 30312962 -172772570 - MLT2A1 LTR ERVL 0 444 400 333 0 0 0 chr5 30312962 30312999 -172772533 + (CA)n Simple_repeat Simple_repeat 2 38 0 2829 77 53 7 chr5 30312999 30313368 -172772164 - MLT2A1 LTR ERVL -44 400 8 4054 237 37 5 chr5 30313565 30314798 -172770734 - L1 LINE L1 -2660 3486 2214 274 325 75 20 chr5 30315099 30315299 -172770233 + LTR16C LTR ERVL 279 489 -2 21 36 0 0 chr5 30316226 30316254 -172769278 + AT_rich Low_complexity Low_complexity 1 28 0 603 177 94 22 chr5 30316362 30316543 -172768989 + MER3 DNA MER1_type 7 200 -9 4423 158 80 8 chr5 30316659 30317811 -172767721 - L1PB1 LINE L1 -66 6085 4849 1956 129 7 10 chr5 30317911 30318214 -172767318 - AluSx SINE Alu -10 302 1 864 137 172 20 chr5 30318215 30318419 -172767113 - L1MB2 LINE L1 -343 5828 5594 321 309 67 11 chr5 30318696 30318874 -172766658 - L1M4 LINE L1 -2154 3992 3805 1131 240 58 33 chr5 30319457 30319812 -172765720 + MLT1A1 LTR MaLR 3 365 0 419 173 55 16 chr5 30320392 30320519 -172765013 - Alu SINE Alu -2 308 177 187 340 87 49 chr5 30320784 30321018 -172764514 + L2 LINE L2 1645 1869 -1445 255 61 0 0 chr5 30321018 30321051 -172764481 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2062 133 3 0 chr5 30321057 30321343 -172764189 - AluSg SINE Alu -23 287 1 187 340 87 49 chr5 30321343 30321492 -172764040 + L2 LINE L2 1873 2050 -1264 193 352 38 19 chr5 30321992 30322097 -172763435 + L2 LINE L2 2687 2793 -521 878 262 75 44 chr5 30322169 30322554 -172762978 + MLT2C1 LTR ERVL 1 397 0 282 29 0 0 chr5 30322577 30322612 -172762920 + (TG)n Simple_repeat Simple_repeat 2 36 0 2109 97 0 45 chr5 30322614 30322925 -172762607 - AluSc SINE Alu -12 297 1 1293 288 74 30 chr5 30322994 30323209 -172762323 + ERVL-C1 LTR ERVL 90 294 -5470 1716 163 9 47 chr5 30323209 30323528 -172762004 - AluJb SINE Alu -5 307 1 1293 288 74 30 chr5 30323528 30324006 -172761526 + ERVL-C1 LTR ERVL 294 750 -5014 1751 144 60 41 chr5 30324006 30324374 -172761158 - THE1C LTR MaLR 0 375 1 1293 288 74 30 chr5 30324374 30324688 -172760844 + ERVL-C1 LTR ERVL 750 1213 -4551 2010 189 14 57 chr5 30324690 30325128 -172760404 + MSTB1 LTR MaLR 1 419 -13 5010 255 60 68 chr5 30325175 30327623 -172757909 + ERVL-C1 LTR ERVL 1259 3807 -1957 24 77 0 0 chr5 30327661 30327713 -172757819 + AT_rich Low_complexity Low_complexity 1 52 0 322 248 26 137 chr5 30328710 30328761 -172756771 + MLT1L LTR MaLR 408 463 -152 2227 136 16 19 chr5 30328761 30329137 -172756395 - THE1C LTR MaLR 0 375 1 322 248 26 137 chr5 30329137 30329319 -172756213 + MLT1L LTR MaLR 463 615 0 237 242 62 39 chr5 30329936 30330064 -172755468 - L1M4 LINE L1 -1785 4361 4231 2072 112 0 29 chr5 30330315 30330628 -172754904 - AluSq SINE Alu -9 304 1 331 148 0 0 chr5 30332017 30332071 -172753461 + L1MA7 LINE L1 6045 6098 -193 829 190 45 15 chr5 30332116 30332316 -172753216 + L1MA7 LINE L1 6086 6291 0 496 258 14 120 chr5 30332982 30333199 -172752333 + L2 LINE L2 2772 2965 -349 329 326 0 0 chr5 30333687 30333782 -172751750 + MER69A DNA AcHobo 1 95 -82 215 0 67 0 chr5 30333792 30333822 -172751710 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 555 351 94 23 chr5 30334590 30335068 -172750464 + HAL1 LINE L1 211 722 -1785 306 337 63 11 chr5 30335158 30335333 -172750199 + HAL1 LINE L1 1295 1478 -1029 1819 141 3 21 chr5 30335390 30335680 -172749852 - THE1-int LTR MaLR -631 949 665 4573 115 2 2 chr5 30335702 30336337 -172749195 + THE1C-int LTR MaLR 946 1580 0 2311 144 0 18 chr5 30336337 30336719 -172748813 + THE1C LTR MaLR 1 375 0 1382 222 50 58 chr5 30336799 30337196 -172748336 - MSTD LTR MaLR 0 396 3 288 171 86 0 chr5 30337676 30337746 -172747786 - MSTC LTR MaLR -17 411 336 372 43 0 0 chr5 30337756 30337802 -172747730 + (TG)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr5 30338187 30338208 -172747324 + AT_rich Low_complexity Low_complexity 1 21 0 405 337 15 7 chr5 30338581 30338760 -172746772 + MLT1G1 LTR MaLR 248 356 -186 251 192 0 19 chr5 30338828 30338880 -172746652 + MLT1G1 LTR MaLR 490 540 -2 213 347 40 52 chr5 30339032 30339205 -172746327 + MIR SINE MIR 90 260 -2 412 181 0 0 chr5 30339313 30339385 -172746147 - Tigger1 DNA MER2_type 0 2418 2347 2218 255 61 24 chr5 30339391 30340092 -172745440 + MER50 LTR ERV1 8 734 0 11972 148 54 40 chr5 30340093 30341883 -172743649 - Tigger1 DNA MER2_type -71 2347 517 1834 169 24 0 chr5 30341883 30342178 -172743354 - AluSx SINE Alu -10 302 1 11972 148 54 40 chr5 30342178 30342698 -172742834 - Tigger1 DNA MER2_type -1901 517 6 22 80 0 0 chr5 30344221 30344271 -172741261 + AT_rich Low_complexity Low_complexity 1 50 0 744 179 134 6 chr5 30344314 30344493 -172741039 + MLT1B LTR MaLR 1 202 -188 710 233 24 63 chr5 30344485 30344648 -172740884 + MLT2D LTR ERVL 217 372 -42 * 408 20 0 0 chr5 30344648 30344697 -172740835 + (CA)n Simple_repeat Simple_repeat 2 50 0 710 233 24 63 chr5 30344697 30344739 -172740793 + MLT2D LTR ERVL 372 414 0 189 147 0 0 chr5 30344739 30344773 -172740759 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 1478 186 27 10 chr5 30345059 30345355 -172740177 + AluJb SINE Alu 5 305 -7 8463 29 1 0 chr5 30346308 30347324 -172738208 - L1PA4 LINE L1 -1490 4656 3640 7472 30 5 0 chr5 30347324 30348810 -172736722 + L1PA4 LINE L1 4666 6155 0 26 50 0 0 chr5 30349696 30349736 -172735796 + AT_rich Low_complexity Low_complexity 1 40 0 314 294 0 0 chr5 30351092 30351160 -172734372 - tRNA-Glu-GAG tRNA tRNA 0 75 8 350 199 84 96 chr5 30351598 30351764 -172733768 - LTR48 LTR ERV1 0 787 624 207 0 0 0 chr5 30351771 30351794 -172733738 + (T)n Simple_repeat Simple_repeat 1 23 0 1046 201 65 77 chr5 30351832 30352185 -172733347 - LTR49 LTR ERV1 -246 349 1 242 108 0 0 chr5 30355065 30355102 -172730430 + L1MCa LINE L1 1115 1151 -5275 37 0 0 0 chr5 30355142 30355179 -172730353 + AT_rich Low_complexity Low_complexity 1 37 0 1773 202 26 21 chr5 30356546 30356932 -172728600 + MLT1B LTR MaLR 3 390 0 312 27 0 0 chr5 30357436 30357473 -172728059 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1726 71 4 8 chr5 30357836 30358076 -172727456 - L1PA8 LINE L1 0 6172 5934 22 0 0 0 chr5 30358409 30358431 -172727101 + AT_rich Low_complexity Low_complexity 1 22 0 1679 193 36 14 chr5 30359769 30360126 -172725406 - MLT1A1 LTR MaLR 0 365 1 254 294 136 17 chr5 30360402 30360579 -172724953 - L2 LINE L2 -654 2660 2463 278 385 36 15 chr5 30360583 30360778 -172724754 - L2 LINE L2 -1227 2087 1889 578 221 100 122 chr5 30361109 30361520 -172724012 + MER93a LTR ERV1 1 402 0 23 0 0 0 chr5 30361520 30361543 -172723989 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr5 30361740 30361775 -172723757 + AT_rich Low_complexity Low_complexity 1 35 0 357 24 0 0 chr5 30362299 30362341 -172723191 + (TG)n Simple_repeat Simple_repeat 1 42 0 2917 200 30 12 chr5 30362367 30362961 -172722571 + MER6A DNA MER2_type 1 605 0 1862 117 71 0 chr5 30363154 30363435 -172722097 - AluSg SINE Alu -9 301 1 496 375 19 16 chr5 30364369 30364686 -172720846 + HERV16 LTR ERVL 2574 2891 -2105 251 125 47 31 chr5 30364688 30364752 -172720780 + T-rich Low_complexity Low_complexity 3 67 0 842 26 61 0 chr5 30364753 30364868 -172720664 - L1PA4 LINE L1 -3 6152 6031 378 225 56 0 chr5 30364973 30365062 -172720470 - MER69 DNA AcHobo -8 2518 2425 5553 155 62 13 chr5 30365080 30366198 -172719334 + Tigger3b DNA MER2_type 41 1231 0 421 307 23 17 chr5 30367561 30367737 -172717795 - MER45A DNA AcHobo -1 177 1 188 301 55 0 chr5 30369285 30369358 -172716174 + L2 LINE L2 2702 2778 -536 582 342 108 36 chr5 30369433 30369907 -172715625 - L2 LINE L2 -2 3311 2804 1154 112 0 22 chr5 30370385 30370563 -172714969 + MSTA-int LTR MaLR 1313 1486 -94 1572 174 174 8 chr5 30370730 30371097 -172714435 + MSTA LTR MaLR 1 428 0 8434 164 8 43 chr5 30371099 30372734 -172712798 + MSTA-int LTR MaLR 3 1580 0 1903 165 131 8 chr5 30372734 30373115 -172712417 + MSTA LTR MaLR 1 428 0 636 221 21 0 chr5 30373293 30373433 -172712099 - L1PB4 LINE L1 -6 6150 6008 1975 236 40 2 chr5 30373596 30374040 -172711492 + LTR53 LTR ERVL 28 488 -31 236 328 0 0 chr5 30375475 30375539 -172709993 - MER20B DNA MER1_type -634 149 86 402 261 155 18 chr5 30377395 30377621 -172707911 - LTR50 LTR ERVL -527 268 12 1933 134 0 3 chr5 30377811 30378094 -172707438 + AluSg SINE Alu 7 288 -22 2133 105 0 43 chr5 30378443 30378767 -172706765 + AluSx SINE Alu 1 310 -2 1962 177 21 8 chr5 30378787 30379172 -172706360 - L1MA6 LINE L1 -9 6291 5902 30 27 0 0 chr5 30379261 30379298 -172706234 + AT_rich Low_complexity Low_complexity 1 37 0 2099 118 0 3 chr5 30379524 30379845 -172705687 + AluSx SINE Alu 1 320 0 2426 76 3 3 chr5 30380098 30380399 -172705133 + AluSp SINE Alu 1 301 -12 310 191 169 0 chr5 30380633 30380722 -172704810 - L1ME2 LINE L1 -257 5907 5804 575 140 50 0 chr5 30380839 30380939 -172704593 - HERVL74 LTR ERVL -2815 2870 2766 2458 128 186 20 chr5 30380939 30381449 -172704083 - LTR49 LTR ERV1 0 595 1 3713 251 57 73 chr5 30381450 30383113 -172702419 - HERVL74 LTR ERVL -2917 2768 1132 400 221 23 0 chr5 30383182 30383268 -172702264 - HERVL74 LTR ERVL -2623 933 846 2730 234 19 27 chr5 30383291 30383966 -172701566 - HERVL74 LTR ERVL -2883 673 4 1588 230 26 15 chr5 30383992 30384383 -172701149 - LTR52 LTR ERVL -26 395 1 27 81 0 0 chr5 30384944 30385006 -172700526 + AT_rich Low_complexity Low_complexity 1 62 0 854 185 56 26 chr5 30385616 30385811 -172699721 - MER3 DNA MER1_type -2 207 7 21 36 0 0 chr5 30385919 30385947 -172699585 + AT_rich Low_complexity Low_complexity 1 28 0 411 317 49 19 chr5 30386885 30387090 -172698442 - LTR16C LTR ERVL -2 489 279 324 218 24 73 chr5 30387982 30388106 -172697426 - L1ME2 LINE L1 -385 5777 5660 1397 256 180 42 chr5 30388166 30388839 -172696693 - LTR41 LTR ERVL -6 767 2 537 285 21 11 chr5 30390405 30390591 -172694941 - LTR33 LTR ERVL -8 513 326 26 50 0 0 chr5 30390878 30390918 -172694614 + AT_rich Low_complexity Low_complexity 1 40 0 230 360 10 0 chr5 30391075 30391175 -172694357 - LTR33 LTR ERVL -55 466 366 321 225 14 0 chr5 30391408 30391479 -172694053 - LTR33 LTR ERVL -449 72 1 189 74 0 0 chr5 30393379 30393406 -172692126 + (CA)n Simple_repeat Simple_repeat 2 28 0 561 193 18 0 chr5 30393705 30393819 -172691713 - MER46C DNA MER2_type -144 194 79 357 314 50 7 chr5 30393998 30394138 -172691394 - MIR SINE MIR -114 148 3 2054 119 0 29 chr5 30394157 30394469 -172691063 + AluSx SINE Alu 1 303 -9 226 229 21 0 chr5 30394536 30394584 -172690948 + CT-rich Low_complexity Low_complexity 2 50 0 22 35 0 0 chr5 30395151 30395180 -172690352 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr5 30395605 30395634 -172689898 + AT_rich Low_complexity Low_complexity 1 29 0 635 270 90 4 chr5 30395683 30395950 -172689582 + L1ME1 LINE L1 5876 6165 -1 402 306 46 32 chr5 30396304 30396677 -172688855 - L1MC4 LINE L1 -548 7494 7117 180 77 0 0 chr5 30396817 30396843 -172688689 + (CA)n Simple_repeat Simple_repeat 1 26 0 532 295 53 66 chr5 30396935 30397225 -172688307 - L1MC4 LINE L1 -966 6819 6641 848 298 84 17 chr5 30397724 30398187 -172687345 - L1MC4 LINE L1 -1903 5905 5412 252 176 103 7 chr5 30398302 30398438 -172687094 + (TA)n Simple_repeat Simple_repeat 2 150 0 593 372 42 21 chr5 30398909 30399334 -172686198 - MERVL LTR ERVL -875 4610 4177 1913 152 0 7 chr5 30401077 30401366 -172684166 + AluSg SINE Alu 1 287 -23 1677 143 91 20 chr5 30401935 30402285 -172683247 - THE1C LTR MaLR 0 375 1 209 125 25 0 chr5 30403319 30403359 -172682173 + (TA)n Simple_repeat Simple_repeat 2 42 0 28 0 0 0 chr5 30404245 30404273 -172681259 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr5 30404629 30404659 -172680873 + AT_rich Low_complexity Low_complexity 1 30 0 466 310 61 56 chr5 30405145 30405358 -172680174 + LTR33 LTR ERVL 11 224 -297 1746 214 119 35 chr5 30406876 30407311 -172678221 - MER70A LTR ERVL 0 472 1 7107 54 10 0 chr5 30407735 30409095 -172676437 - L1PA5 LINE L1 0 6154 4788 32 62 0 0 chr5 30412037 30412085 -172673447 + GC_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr5 30414057 30414081 -172671451 + GC_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr5 30415402 30415427 -172670105 + AT_rich Low_complexity Low_complexity 1 25 0 305 240 188 52 chr5 30415504 30415754 -172669778 + L1 LINE L1 3092 3375 -2771 234 223 29 50 chr5 30416310 30416449 -172669083 + (CACAA)n Simple_repeat Simple_repeat 4 139 0 205 336 23 8 chr5 30416503 30416634 -172668898 + (CATA)n Simple_repeat Simple_repeat 2 134 0 437 307 23 17 chr5 30417904 30418080 -172667452 + MER45A DNA AcHobo 1 177 -1 5414 153 68 13 chr5 30419449 30420561 -172664971 - Tigger3b DNA MER2_type 0 1231 41 375 218 58 0 chr5 30420581 30420668 -172664864 + MER69 DNA AcHobo 2427 2518 -8 842 26 61 0 chr5 30420773 30420952 -172664580 + L1PA4 LINE L1 6031 6216 0 481 375 19 16 chr5 30420954 30421271 -172664261 - HERV16 LTR ERVL -2105 2891 2574 1961 115 69 0 chr5 30422205 30422493 -172663039 + AluSg SINE Alu 1 308 -2 3025 193 29 12 chr5 30422685 30423280 -172662252 - MER6A DNA MER2_type 0 605 1 351 65 0 0 chr5 30423304 30423350 -172662182 + (CA)n Simple_repeat Simple_repeat 1 46 0 23 33 0 0 chr5 30423881 30423911 -172661621 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr5 30424092 30424131 -172661401 + AT_rich Low_complexity Low_complexity 1 39 0 573 224 100 122 chr5 30424131 30424542 -172660990 - MER93a LTR ERV1 0 402 1 261 385 36 15 chr5 30424873 30425068 -172660464 + L2 LINE L2 1889 2087 -1227 243 309 129 17 chr5 30425072 30425250 -172660282 + L2 LINE L2 2463 2660 -654 1661 194 39 14 chr5 30425526 30425882 -172659650 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr5 30427220 30427242 -172658290 + AT_rich Low_complexity Low_complexity 1 22 0 1735 67 4 8 chr5 30427575 30427813 -172657719 + L1PA8 LINE L1 5934 6170 -2 276 30 0 0 chr5 30428176 30428209 -172657323 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1759 215 23 18 chr5 30428713 30429099 -172656433 - MLT1B LTR MaLR 0 390 3 23 0 0 0 chr5 30430462 30430485 -172655047 + AT_rich Low_complexity Low_complexity 1 23 0 242 108 0 0 chr5 30430525 30430562 -172654970 - L1MCa LINE L1 -5275 1151 1115 1066 201 65 77 chr5 30433447 30433800 -172651732 + LTR49 LTR ERV1 1 349 -246 346 199 84 96 chr5 30433861 30434027 -172651505 + LTR48 LTR ERV1 624 787 0 250 325 26 40 chr5 30434092 30434243 -172651289 + MER57-int LTR ERV1 1657 1805 -5732 315 294 0 0 chr5 30434465 30434533 -172650999 + tRNA-Glu-GAG tRNA tRNA 8 75 0 26 50 0 0 chr5 30435888 30435928 -172649604 + AT_rich Low_complexity Low_complexity 1 40 0 7327 34 5 0 chr5 30436813 30438294 -172647238 - L1PA4 LINE L1 0 6155 4666 8476 28 1 0 chr5 30438294 30439310 -172646222 + L1PA4 LINE L1 3640 4656 -1490 1500 181 27 10 chr5 30440264 30440556 -172644976 - AluJb SINE Alu -7 305 9 189 147 0 0 chr5 30440847 30440881 -172644651 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 710 233 24 63 chr5 30440881 30440923 -172644609 - MLT2D LTR ERVL 0 414 372 405 0 0 0 chr5 30440923 30440968 -172644564 + (TG)n Simple_repeat Simple_repeat 2 46 0 710 233 24 63 chr5 30440968 30441131 -172644401 - MLT2D LTR ERVL -42 372 217 * 733 179 134 6 chr5 30441123 30441302 -172644230 - MLT1B LTR MaLR -188 202 1 22 80 0 0 chr5 30441345 30441395 -172644137 + AT_rich Low_complexity Low_complexity 1 50 0 12022 148 54 38 chr5 30442921 30443439 -172642093 + Tigger1 DNA MER2_type 6 514 -1904 1854 172 24 0 chr5 30443439 30443736 -172641796 + AluSx SINE Alu 1 304 -8 12022 148 54 38 chr5 30443736 30445523 -172640009 + Tigger1 DNA MER2_type 514 2347 -71 2227 249 62 25 chr5 30445531 30446225 -172639307 - MER50 LTR ERV1 -7 727 8 413 181 0 0 chr5 30446231 30446303 -172639229 + Tigger1 DNA MER2_type 2347 2418 0 197 317 78 54 chr5 30446411 30446578 -172638954 - MIR SINE MIR -2 260 90 258 173 0 19 chr5 30446730 30446782 -172638750 - MLT1G1 LTR MaLR -2 540 490 402 336 15 7 chr5 30446850 30447029 -172638503 - MLT1G1 LTR MaLR -186 391 248 21 0 0 0 chr5 30447402 30447423 -172638109 + AT_rich Low_complexity Low_complexity 1 21 0 318 50 0 0 chr5 30447808 30447848 -172637684 + (CA)n Simple_repeat Simple_repeat 1 40 0 378 175 26 13 chr5 30447858 30447950 -172637582 + MSTC LTR MaLR 301 411 -2 1433 221 51 39 chr5 30448413 30448802 -172636730 + MSTD LTR MaLR 3 396 0 2314 147 0 18 chr5 30448882 30449264 -172636268 - THE1C LTR MaLR 0 375 1 9459 122 40 40 chr5 30449264 30450845 -172634687 - THE1C-int LTR MaLR 0 1580 1 2345 114 27 11 chr5 30450845 30451214 -172634318 - THE1C LTR MaLR 0 375 1 23 54 0 0 chr5 30451317 30451354 -172634178 + AT_rich Low_complexity Low_complexity 1 37 0 902 251 146 69 chr5 30452080 30452678 -172632854 - LTR48B LTR ERV1 0 644 1 720 251 60 8 chr5 30452997 30453232 -172632300 - LTR56 LTR ERV1 0 445 199 750 171 54 93 chr5 30453249 30453507 -172632025 - LTR56 LTR ERV1 -197 248 1 196 220 100 0 chr5 30453525 30453575 -172631957 + MIR SINE MIR 120 174 -88 702 187 0 43 chr5 30453633 30453772 -172631760 + FLAM_C SINE Alu 1 133 0 1483 129 0 5 chr5 30453812 30454036 -172631496 - LOR1b LTR ERV1 -238 223 1 877 298 85 39 chr5 30455101 30455817 -172629715 - HAL1 LINE L1 -7 2500 1752 248 182 0 0 chr5 30455824 30455868 -172629664 - MLT2D LTR ERVL -2 412 369 2224 173 16 42 chr5 30455886 30456383 -172629149 + LTR22B LTR ERVK 5 488 -4 393 75 0 0 chr5 30456393 30456446 -172629086 + (TG)n Simple_repeat Simple_repeat 2 54 0 671 219 16 0 chr5 30456480 30456608 -172628924 - MLT2B1 LTR ERVL -63 457 328 5175 228 121 38 chr5 30456608 30458078 -172627454 - MER52A LTR ERV1 0 1755 269 573 220 145 66 chr5 30458129 30458356 -172627176 - MLT2B1 LTR ERVL -265 255 11 2937 160 30 6 chr5 30458356 30458887 -172626645 + L1MA4 LINE L1 5700 6243 -57 459 313 24 37 chr5 30458932 30459178 -172626354 - HAL1 LINE L1 -814 1693 1451 301 337 63 11 chr5 30459186 30459361 -172626171 - HAL1 LINE L1 -1029 1478 1295 530 359 99 22 chr5 30459451 30459995 -172625537 - HAL1 LINE L1 -1785 722 137 215 0 67 0 chr5 30460697 30460727 -172624805 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 319 326 0 0 chr5 30460737 30460832 -172624700 - MER69A DNA AcHobo -82 95 1 498 258 14 120 chr5 30461321 30461538 -172623994 - L2 LINE L2 -349 2965 2772 185 279 0 0 chr5 30461636 30461679 -172623853 - L2 LINE L2 -1801 1513 1471 807 190 45 15 chr5 30462204 30462404 -172623128 - L1MA7 LINE L1 0 6291 6086 327 148 0 0 chr5 30462449 30462503 -172623029 - L1MA7 LINE L1 -193 6098 6045 2084 115 0 29 chr5 30463891 30464204 -172621328 + AluSq SINE Alu 1 304 -9 374 242 62 39 chr5 30464455 30464583 -172620949 + L1M4 LINE L1 4231 4361 -1785 322 248 26 137 chr5 30465200 30465382 -172620150 - MLT1L LTR MaLR 0 615 463 2227 136 16 19 chr5 30465382 30465758 -172619774 + THE1C LTR MaLR 1 375 0 322 248 26 137 chr5 30465758 30465809 -172619723 - MLT1L LTR MaLR -152 463 408 24 77 0 0 chr5 30466806 30466858 -172618674 + AT_rich Low_complexity Low_complexity 1 52 0 5040 251 63 69 chr5 30466896 30469340 -172616192 - ERVL-C1 LTR ERVL -1957 3807 1259 1997 192 14 57 chr5 30469387 30469825 -172615707 - MSTB1 LTR MaLR -13 419 1 1318 292 73 29 chr5 30469827 30470140 -172615392 - ERVL-C1 LTR ERVL -4551 1213 915 1751 144 60 41 chr5 30470140 30470508 -172615024 + THE1C LTR MaLR 1 375 0 1318 292 73 29 chr5 30470508 30470986 -172614546 - ERVL-C1 LTR ERVL -4849 915 294 1732 160 9 47 chr5 30470986 30471305 -172614227 + AluJb SINE Alu 1 307 -5 1318 292 73 29 chr5 30471305 30471520 -172614012 - ERVL-C1 LTR ERVL -5470 294 90 2109 97 0 45 chr5 30471589 30471900 -172613632 + AluSc SINE Alu 1 297 -12 282 29 0 0 chr5 30471902 30471937 -172613595 + (CA)n Simple_repeat Simple_repeat 2 36 0 893 260 75 44 chr5 30471960 30472345 -172613187 - MLT2C1 LTR ERVL 0 397 1 193 352 38 19 chr5 30472417 30472522 -172613010 - L2 LINE L2 -521 2793 2687 228 334 86 52 chr5 30473022 30473171 -172612361 - L2 LINE L2 -1264 2050 1908 1998 136 4 0 chr5 30473171 30473506 -172612026 + AluSg SINE Alu 1 336 0 228 334 86 52 chr5 30473506 30473762 -172611770 - L2 LINE L2 -1406 1908 1630 205 265 216 20 chr5 30473785 30473887 -172611645 + L2 LINE L2 3191 3312 -1 30 0 0 0 chr5 30474059 30474089 -172611443 + AT_rich Low_complexity Low_complexity 1 30 0 218 310 0 0 chr5 30474378 30474436 -172611096 + L2 LINE L2 3001 3058 -214 23 33 0 0 chr5 30476129 30476159 -172609373 + AT_rich Low_complexity Low_complexity 1 30 0 2337 91 3 0 chr5 30476761 30477058 -172608474 - AluSp SINE Alu -15 298 1 183 42 0 0 chr5 30477163 30477187 -172608345 + (T)n Simple_repeat Simple_repeat 1 24 0 2130 134 0 0 chr5 30477766 30478073 -172607459 + AluSg SINE Alu 1 307 -3 8209 219 69 43 chr5 30478389 30480189 -172605343 - L1MC3 LINE L1 0 9204 7452 1919 106 58 0 chr5 30480189 30480481 -172605051 - AluSg SINE Alu -1 309 1 8209 219 69 43 chr5 30480481 30480503 -172605029 - L1MC3 LINE L1 -1752 7452 7432 2450 63 0 3 chr5 30480503 30480803 -172604729 - AluY SINE Alu -12 299 1 8209 219 69 43 chr5 30480803 30481637 -172603895 - L1MC3 LINE L1 -1772 7432 6478 1711 202 91 28 chr5 30481637 30482098 -172603434 + LTR2B LTR ERV1 1 490 0 8209 219 69 43 chr5 30482098 30482190 -172603342 - L1MC3 LINE L1 -2726 6478 6390 5005 285 48 17 chr5 30482164 30484327 -172601205 - L1MC3 LINE L1 -1774 5791 3561 * 248 230 40 0 chr5 30484329 30484403 -172601129 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 701 277 78 42 chr5 30484425 30485001 -172600531 - L1MC3 LINE L1 -4263 3483 2802 615 256 92 56 chr5 30485038 30485288 -172600244 - L1MC3 LINE L1 -5255 1791 1533 500 297 48 0 chr5 30485566 30485731 -172599801 - MLT1F1 LTR MaLR -385 182 10 183 80 0 0 chr5 30486194 30486219 -172599313 + (CA)n Simple_repeat Simple_repeat 2 26 0 1493 215 32 24 chr5 30486453 30486692 -172598840 - L1MB8 LINE L1 -2 6176 5931 2077 116 3 3 chr5 30486692 30486986 -172598546 - AluSx SINE Alu -18 294 1 1493 215 32 24 chr5 30486986 30487122 -172598410 - L1MB8 LINE L1 -247 5931 5798 497 221 66 22 chr5 30487148 30487329 -172598203 - L1M4 LINE L1 -3782 3175 2987 * 4415 275 68 45 chr5 30487324 30487472 -172598060 - L1M4 LINE L1 -4550 2409 2266 1986 96 30 4 chr5 30487472 30487780 -172597752 - AluSg SINE Alu 0 318 4 4415 275 68 45 chr5 30487780 30488315 -172597217 - L1M4 LINE L1 -4693 2266 1745 2091 107 0 0 chr5 30488315 30488630 -172596902 - AluSc SINE Alu 0 315 1 4415 275 68 45 chr5 30488630 30490290 -172595242 - L1M4 LINE L1 -5214 1745 11 262 391 77 6 chr5 30490850 30491006 -172594526 - MIR3 SINE MIR -38 170 4 26 0 0 0 chr5 30491495 30491521 -172594011 + AT_rich Low_complexity Low_complexity 1 26 0 826 312 54 10 chr5 30491860 30492174 -172593358 - MER69 DNA AcHobo -2198 328 1 181 376 65 0 chr5 30492429 30492522 -172593010 + L2 LINE L2 2716 2814 -500 251 260 156 10 chr5 30492847 30492943 -172592589 + L2 LINE L2 3163 3272 0 7210 171 40 9 chr5 30493105 30494422 -172591110 - Tigger1 DNA MER2_type 0 2418 1061 3122 153 33 0 chr5 30496753 30497294 -172588238 - Tigger1 DNA MER2_type -1339 1079 521 356 135 11 56 chr5 30497295 30497384 -172588148 - L1PA16 LINE L1 -2 6164 6080 274 330 36 9 chr5 30497384 30497496 -172588036 + L2 LINE L2 3196 3310 -3 13055 202 43 8 chr5 30497517 30502680 -172582852 - L1PB1 LINE L1 -5 6862 1517 2096 143 39 22 chr5 30502680 30502879 -172582653 - THE1B LTR MaLR 0 364 155 2344 38 0 3 chr5 30502879 30503169 -172582363 - L1PA2 LINE L1 0 6155 5867 2096 143 39 22 chr5 30503169 30503327 -172582205 - THE1B LTR MaLR -209 155 1 9066 159 10 5 chr5 30503327 30504838 -172580694 - L1PB1 LINE L1 -5342 1521 3 2762 182 19 17 chr5 30504849 30505382 -172580150 - Tigger1 DNA MER2_type -1884 534 1 1350 194 70 65 chr5 30505567 30505954 -172579578 + MLT1B LTR MaLR 1 389 -1 27 81 0 0 chr5 30506049 30506111 -172579421 + AT_rich Low_complexity Low_complexity 1 62 0 230 207 96 111 chr5 30506775 30507046 -172578486 - L1M4 LINE L1 -1484 4662 4396 2287 166 60 66 chr5 30507250 30507617 -172577915 - L1MB2 LINE L1 -2 6169 5805 1978 133 0 10 chr5 30507617 30507945 -172577587 - AluSx SINE Alu 0 312 1 2287 166 60 66 chr5 30507945 30508156 -172577376 - L1MB2 LINE L1 -366 5805 5594 272 315 99 23 chr5 30508140 30508613 -172576919 - L1M4 LINE L1 -1822 4324 3816 * 980 296 32 20 chr5 30508802 30509245 -172576287 - L1M4 LINE L1 -1987 4159 3712 * 4178 209 41 17 chr5 30509240 30511062 -172574470 + L1MA9 LINE L1 4277 6150 -162 237 287 20 164 chr5 30512052 30512400 -172573132 + MLT2F LTR ERVL 157 454 -209 375 176 0 0 chr5 30512424 30512492 -172573040 - AluJ/FLAM SINE Alu -230 72 5 327 314 40 17 chr5 30512502 30512677 -172572855 + MLT2F LTR ERVL 463 641 -22 1975 177 26 31 chr5 30513360 30513817 -172571715 - L1MA8 LINE L1 -3 6288 5834 1248 229 50 37 chr5 30514641 30515100 -172570432 - LTR37B LTR ERV1 0 468 4 23 68 0 0 chr5 30515431 30515475 -172570057 + AT_rich Low_complexity Low_complexity 1 44 0 7349 123 82 109 chr5 30516039 30517785 -172567747 - pTR5 LTR ERV1 0 2438 741 2275 84 6 6 chr5 30517807 30518118 -172567414 + AluY SINE Alu 1 311 0 1189 246 44 33 chr5 30518705 30519066 -172566466 - MLT1A1 LTR MaLR 0 365 1 2103 141 0 0 chr5 30519320 30519632 -172565900 - AluSp SINE Alu -1 312 1 27 81 0 0 chr5 30519769 30519831 -172565701 + AT_rich Low_complexity Low_complexity 1 62 0 341 340 139 4 chr5 30520316 30520554 -172564978 + Charlie2 DNA MER1_type 46 315 -2467 4970 143 4 7 chr5 30520578 30521399 -172564133 + L1PA15 LINE L1 5346 6163 -2 333 267 139 25 chr5 30521525 30521727 -172563805 - L1ME3A LINE L1 -112 6058 5834 310 318 117 0 chr5 30521770 30521924 -172563608 - L1ME3A LINE L1 -404 5766 5595 658 161 36 93 chr5 30522048 30522138 -172563394 + LTR38 LTR ERV1 1 76 -480 1898 150 0 3 chr5 30522138 30522431 -172563101 - AluSx SINE Alu -20 292 1 658 161 36 93 chr5 30522431 30522533 -172562999 + LTR38 LTR ERV1 76 182 -374 5194 177 23 28 chr5 30522533 30523128 -172562404 + L1PA16 LINE L1 4738 5335 -831 351 0 0 0 chr5 30523128 30523167 -172562365 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5194 177 23 28 chr5 30523167 30524008 -172561524 + L1PA16 LINE L1 5335 6157 -9 40 21 0 0 chr5 30524034 30524081 -172561451 + AT_rich Low_complexity Low_complexity 1 47 0 1897 168 64 13 chr5 30524099 30524475 -172561057 + LTR38 LTR ERV1 158 552 -4 23 33 0 0 chr5 30524507 30524537 -172560995 + AT_rich Low_complexity Low_complexity 1 30 0 259 138 15 15 chr5 30524539 30524604 -172560928 + (TATTG)n Simple_repeat Simple_repeat 1 65 0 304 158 0 0 chr5 30524789 30524846 -172560686 - L1MA4 LINE L1 0 6300 6244 * 469 156 46 37 chr5 30524820 30524929 -172560603 - L1M3f LINE L1 -5203 125 16 1664 209 0 0 chr5 30524977 30525288 -172560244 - AluJo SINE Alu -1 311 1 510 315 50 29 chr5 30525411 30525931 -172559601 - L1M4 LINE L1 -2272 3874 3344 1167 258 58 3 chr5 30526819 30527129 -172558403 - MER68 LTR ERV1 -9 553 227 393 172 35 23 chr5 30527128 30527215 -172558317 - LTR52 LTR ERVL -5 416 329 * 253 182 0 0 chr5 30527210 30527254 -172558278 - MER68 LTR ERV1 -467 95 52 * 517 261 30 0 chr5 30527253 30527387 -172558145 - MER77 LTR ERV1 -43 562 425 1179 162 0 5 chr5 30528575 30528766 -172556766 - AluSg/x SINE Alu -25 287 98 26 0 0 0 chr5 30529459 30529485 -172556047 + AT_rich Low_complexity Low_complexity 1 26 0 454 254 38 56 chr5 30529656 30529869 -172555663 + MER3 DNA MER1_type 1 209 0 339 281 175 31 chr5 30529920 30530080 -172555452 - MER5A DNA MER1_type 0 189 7 2206 114 0 0 chr5 30530316 30530615 -172554917 - AluSg SINE Alu -11 299 1 493 331 7 0 chr5 30530825 30530970 -172554562 + MIR SINE MIR 11 156 -106 21 0 0 0 chr5 30531039 30531060 -172554472 + AT_rich Low_complexity Low_complexity 1 21 0 355 269 10 19 chr5 30531413 30531517 -172554015 - MIR SINE MIR -56 206 104 727 303 35 45 chr5 30531526 30531988 -172553544 - L1M4 LINE L1 -1203 4943 4487 480 128 0 0 chr5 30532307 30532385 -172553147 - L1PA13 LINE L1 -4 6159 6082 401 91 0 0 chr5 30532389 30532444 -172553088 + L1PA13 LINE L1 6022 6076 -87 1555 250 15 11 chr5 30532908 30533582 -172551950 + MER21B LTR ERV1 19 750 -113 1329 269 78 47 chr5 30536046 30536596 -172548936 + MLT1E LTR MaLR 1 593 0 298 263 125 38 chr5 30536631 30536791 -172548741 + HERVL LTR ERVL 3165 3338 -2316 2823 189 41 8 chr5 30537317 30537812 -172547720 + MLT2B3 LTR ERVL 1 478 -76 636 51 20 10 chr5 30537812 30537910 -172547622 + (TCTA)n Simple_repeat Simple_repeat 2 100 0 2823 189 41 8 chr5 30537910 30537921 -172547611 + MLT2B3 LTR ERVL 478 487 -67 1998 53 0 4 chr5 30537921 30538183 -172547349 - L1PA4 LINE L1 0 6155 5895 2823 189 41 8 chr5 30538183 30538210 -172547322 + MLT2B3 LTR ERVL 487 553 -1 266 336 9 28 chr5 30538825 30538932 -172546600 - MIR SINE MIR -156 106 2 381 248 21 57 chr5 30539459 30539600 -172545932 + MER77 LTR ERV1 60 195 -410 1017 252 62 100 chr5 30539631 30540162 -172545370 + MER77 LTR ERV1 140 601 -4 22 0 0 0 chr5 30542425 30542447 -172543085 + AT_rich Low_complexity Low_complexity 1 22 0 262 276 87 31 chr5 30542876 30543003 -172542529 - MLT1J2 LTR MaLR -33 417 284 27 0 0 0 chr5 30543844 30543871 -172541661 + AT_rich Low_complexity Low_complexity 1 27 0 205 152 0 0 chr5 30544689 30544722 -172540810 + (TG)n Simple_repeat Simple_repeat 2 34 0 2246 86 0 3 chr5 30545655 30545945 -172539587 + AluSc SINE Alu 8 296 -13 967 249 108 12 chr5 30546225 30546558 -172538974 - MLT1A1 LTR MaLR 0 365 1 931 287 175 5 chr5 30547285 30547703 -172537829 + L2 LINE L2 950 1438 -1876 524 295 86 53 chr5 30548081 30548711 -172536821 - L1MEc LINE L1 -4687 1709 1039 1887 138 0 28 chr5 30548711 30549031 -172536501 - AluY SINE Alu 0 311 1 524 295 86 53 chr5 30549031 30549292 -172536240 - L1MEc LINE L1 -5357 1039 788 206 279 13 13 chr5 30550586 30550665 -172534867 + CT-rich Low_complexity Low_complexity 2 80 0 23 0 0 0 chr5 30552810 30552833 -172532699 + AT_rich Low_complexity Low_complexity 1 23 0 2009 104 3 13 chr5 30553560 30553859 -172531673 + AluY SINE Alu 1 296 -15 2368 57 0 3 chr5 30554825 30555123 -172530409 + AluY SINE Alu 1 297 -14 1326 201 40 63 chr5 30556752 30556875 -172528657 + MLT1B LTR MaLR 1 125 -265 1819 146 0 0 chr5 30556875 30557156 -172528376 + AluSx SINE Alu 30 310 -2 1326 201 40 63 chr5 30557156 30557431 -172528101 + MLT1B LTR MaLR 125 390 0 2035 117 7 0 chr5 30557573 30557872 -172527660 - AluSx SINE Alu -11 301 1 21 36 0 0 chr5 30558126 30558154 -172527378 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr5 30558204 30558235 -172527297 + AT_rich Low_complexity Low_complexity 1 31 0 707 322 33 0 chr5 30558526 30558737 -172526795 + MIR SINE MIR 41 258 -4 246 160 0 0 chr5 30559100 30559150 -172526382 + CT-rich Low_complexity Low_complexity 1 50 0 220 221 15 29 chr5 30560092 30560160 -172525372 + A-rich Low_complexity Low_complexity 6 72 0 2396 148 22 36 chr5 30560168 30560613 -172524919 - MER65A LTR ERV1 -5 440 2 21 36 0 0 chr5 30560643 30560671 -172524861 + AT_rich Low_complexity Low_complexity 1 28 0 298 372 71 0 chr5 30560937 30561120 -172524412 - MIR SINE MIR -16 246 51 2457 66 0 0 chr5 30561672 30561975 -172523557 + AluY SINE Alu 1 303 -8 363 216 50 144 chr5 30562036 30562175 -172523357 - L2 LINE L2 -8 3305 3180 4182 204 42 15 chr5 30562213 30562518 -172523014 - MER54A LTR ERVL -2 899 604 2099 133 10 51 chr5 30562518 30562873 -172522659 - THE1C LTR MaLR 0 375 36 2015 144 3 0 chr5 30562873 30563178 -172522354 + AluSx SINE Alu 1 306 -6 2099 133 10 51 chr5 30563178 30563213 -172522319 - THE1C LTR MaLR -339 36 1 4182 204 42 15 chr5 30563213 30563761 -172521771 - MER54A LTR ERVL -297 604 23 2905 298 74 40 chr5 30563817 30565198 -172520334 - L2 LINE L2 -215 3098 1651 1649 205 18 12 chr5 30565201 30565543 -172519989 + MLT2D LTR ERVL 1 344 -70 1227 282 164 10 chr5 30565589 30566082 -172519450 - L2 LINE L2 -1815 1499 931 219 69 0 0 chr5 30567295 30567324 -172518208 + (TA)n Simple_repeat Simple_repeat 1 29 0 330 26 0 0 chr5 30567326 30567365 -172518167 + (CA)n Simple_repeat Simple_repeat 2 40 0 1518 179 17 30 chr5 30569260 30569557 -172515975 + AluJo SINE Alu 3 295 -17 429 352 86 25 chr5 30571756 30572183 -172513349 - L1ME4a LINE L1 -296 5825 5372 205 314 11 122 chr5 30573296 30573465 -172512067 - L2 LINE L2 -181 3091 2943 2521 120 3 8 chr5 30573465 30573831 -172511701 - THE1B LTR MaLR 0 364 1 205 314 11 122 chr5 30573831 30573849 -172511683 - L2 LINE L2 -329 2943 2925 329 244 0 12 chr5 30573946 30574032 -172511500 - L1MDa LINE L1 -3381 3159 3075 1588 244 20 0 chr5 30574128 30574484 -172511048 - MLT1A1 LTR MaLR -2 363 1 198 103 0 0 chr5 30574769 30574798 -172510734 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 320 260 13 110 chr5 30574838 30574992 -172510540 - L1MDa LINE L1 -5104 1436 1298 218 122 0 61 chr5 30576107 30576156 -172509376 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 324 0 0 0 chr5 30576166 30576202 -172509330 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 35766 34 113 3 chr5 30576202 30581712 -172503820 - L1PA2 LINE L1 -13 6142 7 965 171 38 86 chr5 30581717 30582009 -172503523 - MER33 DNA MER1_type -41 283 6 22 0 0 0 chr5 30582318 30582340 -172503192 + AT_rich Low_complexity Low_complexity 1 22 0 2424 150 7 41 chr5 30583408 30583869 -172501663 - MER65A LTR ERV1 0 445 1 231 297 22 11 chr5 30584045 30584136 -172501396 + CT-rich Low_complexity Low_complexity 6 97 0 2038 108 4 0 chr5 30585498 30585776 -172499756 + AluSp SINE Alu 35 313 0 214 284 67 20 chr5 30585801 30585900 -172499632 + MIR SINE MIR 34 144 -64 28 29 0 0 chr5 30586874 30586909 -172498623 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr5 30588481 30588506 -172497026 + AT_rich Low_complexity Low_complexity 1 25 0 207 205 0 0 chr5 30590410 30590449 -172495083 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 2073 219 29 34 chr5 30641466 30642047 -172443485 + L1MB7 LINE L1 5606 6183 -1 308 379 44 20 chr5 30642331 30642579 -172442953 - MIR SINE MIR -8 254 1 24 32 0 0 chr5 30642654 30642685 -172442847 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr5 30643514 30643542 -172441990 + AT_rich Low_complexity Low_complexity 1 28 0 290 259 17 92 chr5 30643575 30643749 -172441783 - L1ME LINE L1 -449 5672 5512 227 317 24 12 chr5 30643961 30644043 -172441489 + MIR SINE MIR 2 84 -178 272 48 24 0 chr5 30644804 30644846 -172440686 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 1339 134 10 14 chr5 30644872 30645081 -172440451 - AluSx SINE Alu -73 239 32 346 86 69 0 chr5 30645097 30645155 -172440377 - AluS SINE Alu -201 102 41 874 307 162 21 chr5 30645699 30646450 -172439082 + L2 LINE L2 2374 3234 -79 24 0 0 0 chr5 30646460 30646484 -172439048 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr5 30646814 30646836 -172438696 + AT_rich Low_complexity Low_complexity 1 22 0 271 353 0 0 chr5 30646861 30646963 -172438569 - MLT1I LTR MaLR -7 402 301 453 103 0 0 chr5 30647067 30647135 -172438397 + (ATTAG)n Simple_repeat Simple_repeat 3 70 0 23 33 0 0 chr5 30647158 30647188 -172438344 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr5 30647943 30647966 -172437566 + AT_rich Low_complexity Low_complexity 1 23 0 6031 140 15 0 chr5 30647966 30649573 -172435959 - L1PA11 LINE L1 -23 6151 4522 8320 181 8 3 chr5 30649577 30651186 -172434346 + L1PA11 LINE L1 2892 4508 -1638 212 0 36 0 chr5 30651187 30651215 -172434317 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 234 105 0 0 chr5 30652408 30652446 -172433086 + (CAA)n Simple_repeat Simple_repeat 2 39 0 347 320 75 62 chr5 30652831 30653203 -172432329 + L2 LINE L2 2055 2431 -883 364 266 92 43 chr5 30653895 30654102 -172431430 - HAL1b LINE L1 -1008 340 124 28 48 0 0 chr5 30654107 30654149 -172431383 + AT_rich Low_complexity Low_complexity 1 42 0 192 307 27 27 chr5 30654332 30654407 -172431125 - L2 LINE L2 -1263 2051 1977 778 167 34 6 chr5 30654673 30654904 -172430628 + Tigger2 DNA MER2_type 2442 2717 -1 203 252 155 10 chr5 30655204 30655307 -172430225 + L3 LINE CR1 588 705 -872 2320 235 16 29 chr5 30655434 30656051 -172429481 + L1MB7 LINE L1 5479 6087 -97 303 185 0 15 chr5 30656119 30656184 -172429348 + L1MB8 LINE L1 6106 6169 -9 482 199 46 53 chr5 30656291 30656422 -172429110 + L1ME LINE L1 462 591 -5454 44 0 0 0 chr5 30656467 30656511 -172429021 + AT_rich Low_complexity Low_complexity 1 44 0 2923 281 40 18 chr5 30657260 30658673 -172426859 + L1MCc LINE L1 1 1798 -4851 797 227 138 44 chr5 30658685 30659405 -172426127 + L1MCc LINE L1 1844 2717 -4224 2653 200 52 2 chr5 30659405 30659924 -172425608 + MER44D DNA MER2_type 1 600 -5 389 231 111 13 chr5 30659943 30660251 -172425281 + L1MCc LINE L1 2752 3131 -3961 1245 214 49 30 chr5 30660258 30660562 -172424970 + MLT2D LTR ERVL 1 310 -104 585 204 0 0 chr5 30660589 30660736 -172424796 + (TA)n Simple_repeat Simple_repeat 2 148 0 1174 291 30 11 chr5 30660905 30661380 -172424152 + L1MCc LINE L1 3130 3613 -3328 24 91 0 0 chr5 30661781 30661847 -172423685 + AT_rich Low_complexity Low_complexity 1 66 0 35 63 0 0 chr5 30661917 30661980 -172423552 + AT_rich Low_complexity Low_complexity 1 63 0 2359 62 3 0 chr5 30663085 30663389 -172422143 - AluY SINE Alu -6 305 1 287 250 54 45 chr5 30663637 30663749 -172421783 + MIR SINE MIR 24 136 -126 311 256 110 54 chr5 30664090 30664426 -172421106 + L1ME3 LINE L1 5625 5979 -183 369 261 76 78 chr5 30664582 30664913 -172420619 + L1ME LINE L1 1302 1605 -4959 22 0 0 0 chr5 30664976 30664998 -172420534 + AT_rich Low_complexity Low_complexity 1 22 0 369 247 130 55 chr5 30665265 30665877 -172419655 + L1ME LINE L1 2381 2995 -3569 25 0 0 0 chr5 30665913 30665938 -172419594 + AT_rich Low_complexity Low_complexity 1 25 0 1979 148 0 0 chr5 30666503 30666807 -172418725 + AluSx SINE Alu 1 304 -8 24 67 0 0 chr5 30667424 30667469 -172418063 + AT_rich Low_complexity Low_complexity 1 45 0 234 309 46 18 chr5 30667487 30667704 -172417828 + L1ME LINE L1 4136 4358 -2206 12203 108 20 26 chr5 30667704 30669987 -172415545 + MER41B-int LTR ERV1 2994 5945 -1 3144 110 90 0 chr5 30669988 30670488 -172415044 + MER41B LTR ERV1 3 547 -88 376 238 29 29 chr5 30670579 30670684 -172414848 + L1ME LINE L1 4438 4542 -2022 452 288 161 13 chr5 30670786 30671158 -172414374 + L1ME LINE L1 4983 5409 -1155 1304 245 69 58 chr5 30673161 30673908 -172411624 - L1ME1 LINE L1 -163 6397 5589 798 279 60 17 chr5 30674008 30674559 -172410973 - L1ME1 LINE L1 -3718 2822 2249 1953 143 3 13 chr5 30676319 30676634 -172408898 + AluSx SINE Alu 1 312 0 200 196 0 18 chr5 30677904 30677960 -172407572 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2675 170 11 5 chr5 30678142 30678578 -172406954 - Tigger2 DNA MER2_type 0 2718 2280 304 201 18 0 chr5 30678578 30678647 -172406885 - Tigger2 DNA MER2_type -2656 62 1 29 90 0 0 chr5 30678895 30678973 -172406559 + AT_rich Low_complexity Low_complexity 1 78 0 2382 68 0 0 chr5 30678989 30679284 -172406248 + AluY SINE Alu 1 295 -16 1573 183 62 32 chr5 30679869 30680207 -172405325 + MER7A DNA MER2_type 1 346 0 253 276 0 82 chr5 30680260 30680358 -172405174 + L1ME LINE L1 5895 5984 -600 1567 230 28 19 chr5 30680376 30680840 -172404692 - L1MA9 LINE L1 -37 6275 5817 2011 95 0 37 chr5 30680840 30681136 -172404396 - AluSg SINE Alu -12 298 14 1567 230 28 19 chr5 30681136 30681722 -172403810 - L1MA9 LINE L1 -495 5817 5104 219 170 21 0 chr5 30682351 30682398 -172403134 + (CA)n Simple_repeat Simple_repeat 1 48 0 1191 170 9 22 chr5 30683630 30683853 -172401679 - MSTA LTR MaLR -2 426 207 1032 231 23 11 chr5 30683851 30684111 -172401421 - MSTB LTR MaLR -163 263 1 * 2423 119 6 6 chr5 30684329 30684691 -172400841 - THE1B LTR MaLR -2 362 1 784 341 54 20 chr5 30684937 30685476 -172400056 + L1MCc LINE L1 -490 66 -5842 848 289 97 49 chr5 30685595 30686225 -172399307 + L1MCc LINE L1 293 952 -4956 260 248 115 0 chr5 30686330 30686443 -172399089 + L1MCc LINE L1 1201 1326 -5100 39 60 0 0 chr5 30686531 30686598 -172398934 + AT_rich Low_complexity Low_complexity 1 67 0 361 291 53 24 chr5 30686654 30686946 -172398586 + L1MCc LINE L1 1421 1932 -4675 1304 211 25 18 chr5 30687235 30687515 -172398017 + AluJo SINE Alu 1 282 -30 290 272 44 80 chr5 30687664 30687914 -172397618 - L1MC/D LINE L1 -2148 5660 5420 22 35 0 0 chr5 30688253 30688282 -172397250 + AT_rich Low_complexity Low_complexity 1 29 0 1070 228 49 26 chr5 30688325 30688632 -172396900 + L1ME3 LINE L1 5625 5938 -224 432 261 14 19 chr5 30688641 30688810 -172396722 + L1MA10 LINE L1 5988 6316 -18 216 97 0 0 chr5 30690449 30690480 -172395052 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 2184 81 40 0 chr5 30690721 30691017 -172394515 - AluY SINE Alu -3 308 1 310 317 10 0 chr5 30691133 30691237 -172394295 + (TATG)n Simple_repeat Simple_repeat 3 107 0 29 0 0 0 chr5 30691336 30691365 -172394167 + AT_rich Low_complexity Low_complexity 1 29 0 192 77 0 0 chr5 30691382 30691408 -172394124 + (TTATA)n Simple_repeat Simple_repeat 4 29 0 27 49 0 0 chr5 30692152 30692193 -172393339 + AT_rich Low_complexity Low_complexity 1 41 0 296 185 64 19 chr5 30692876 30693033 -172392499 + (TA)n Simple_repeat Simple_repeat 2 165 0 1807 189 14 3 chr5 30693080 30693424 -172392108 + MER7A DNA MER2_type 1 346 0 271 338 28 21 chr5 30694085 30694227 -172391305 + MER5A DNA MER1_type 9 151 -38 2153 112 0 0 chr5 30694379 30694673 -172390859 - AluSg1 SINE Alu -15 294 1 1219 244 60 55 chr5 30694708 30695110 -172390422 - MER92A LTR ERV1 -8 404 1 30 27 0 0 chr5 30695157 30695194 -172390338 + AT_rich Low_complexity Low_complexity 1 37 0 897 239 34 10 chr5 30695373 30695578 -172389954 - MLT1H LTR MaLR -274 275 66 2868 155 39 109 chr5 30697671 30698343 -172387189 + MER51A LTR ERV1 1 625 -9 309 350 120 39 chr5 30698442 30698825 -172386707 + L2 LINE L2 2900 3313 0 2066 109 169 11 chr5 30698963 30699331 -172386201 + MSTA LTR MaLR 3 428 0 1955 219 23 10 chr5 30699592 30700071 -172385461 + MER31A LTR ERV1 1 485 0 22 0 0 0 chr5 30700085 30700107 -172385425 + AT_rich Low_complexity Low_complexity 1 22 0 226 282 13 13 chr5 30700995 30701073 -172384459 + MIR SINE MIR 66 143 -119 299 295 74 9 chr5 30701163 30701380 -172384152 + L1M4 LINE L1 4116 4346 -1800 23 0 0 0 chr5 30701531 30701554 -172383978 + AT_rich Low_complexity Low_complexity 1 23 0 375 183 78 26 chr5 30701570 30701685 -172383847 + L1M4 LINE L1 4598 4718 -1428 613 337 42 29 chr5 30703107 30703484 -172382048 + HERV16 LTR ERVL 2116 2497 -2499 22 70 0 0 chr5 30704536 30704579 -172380953 + AT_rich Low_complexity Low_complexity 1 43 0 716 206 67 75 chr5 30705090 30705458 -172380074 + LTR21B LTR ERV1 28 438 0 9168 210 31 34 chr5 30705458 30709581 -172375951 + HERVFH21 LTR ERV1 1 3970 -2559 2952 294 27 41 chr5 30709717 30711133 -172374399 + HERVFH21 LTR ERV1 5354 6529 0 621 214 78 48 chr5 30711152 30711511 -172374021 + LTR21B LTR ERV1 28 438 0 2852 13 0 0 chr5 30711620 30711938 -172373594 + AluYb8 SINE Alu 1 318 0 2982 278 104 48 chr5 30712350 30713172 -172372360 + L1MB7 LINE L1 15 790 -5856 297 68 0 0 chr5 30713172 30713216 -172372316 + (CA)n Simple_repeat Simple_repeat 1 44 0 2982 278 104 48 chr5 30713216 30714351 -172371181 + L1MB7 LINE L1 790 2096 -4550 1194 245 46 14 chr5 30714379 30714768 -172370764 - L1MB5 LINE L1 -8 6166 5764 3839 263 46 46 chr5 30714954 30716847 -172368685 + L1MB7 LINE L1 2536 4426 -2218 2337 101 0 0 chr5 30716847 30717154 -172368378 - AluSx SINE Alu -5 307 1 3839 263 46 46 chr5 30717154 30717371 -172368161 + L1MB7 LINE L1 4426 4642 -2002 773 274 68 3 chr5 30717373 30717665 -172367867 + L1MB7 LINE L1 5367 5677 -967 9523 208 78 7 chr5 30717668 30720681 -172364851 + L1M1 LINE L1 24 2666 -4899 2237 141 8 19 chr5 30720681 30721057 -172364475 + THE1C LTR MaLR 1 372 -3 9523 208 78 7 chr5 30721057 30721211 -172364321 + L1M1 LINE L1 2666 2808 -4757 7387 233 68 25 chr5 30721215 30726659 -172358873 + L1MA6 LINE L1 2097 7707 -12 435 190 28 45 chr5 30726659 30726838 -172358694 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 3339 230 48 9 chr5 30726846 30727800 -172357732 + L1MB7 LINE L1 5686 6674 -8 868 245 21 0 chr5 30727976 30728164 -172357368 - MLT1A1 LTR MaLR 0 365 174 392 176 0 27 chr5 30728172 30728246 -172357286 - MLT1A1 LTR MaLR -356 72 1 27 0 0 0 chr5 30728942 30728969 -172356563 + AT_rich Low_complexity Low_complexity 1 27 0 2077 114 6 9 chr5 30729003 30729327 -172356205 - L1MA2 LINE L1 0 6304 5982 230 246 16 0 chr5 30730760 30730821 -172354711 + (TG)n Simple_repeat Simple_repeat 1 62 0 2626 241 18 7 chr5 30730941 30731621 -172353911 + L1MB1 LINE L1 4406 5092 -1054 1566 188 33 11 chr5 30731637 30732005 -172353527 + L1MB1 LINE L1 5791 6166 -2 262 156 65 13 chr5 30732295 30732372 -172353160 + Charlie6 DNA MER1_type 2806 2886 -614 2624 188 11 6 chr5 30732638 30733106 -172352426 - MER70A LTR ERVL 0 472 3 2171 121 0 3 chr5 30733454 30733752 -172351780 - AluSg SINE Alu -5 305 9 736 203 14 0 chr5 30734853 30734996 -172350536 - AluSg/x SINE Alu -13 299 155 273 196 0 0 chr5 30735333 30735389 -172350143 + (TA)n Simple_repeat Simple_repeat 1 56 0 2822 170 20 7 chr5 30735550 30736091 -172349441 + L1MA4 LINE L1 5742 6289 -11 265 299 21 21 chr5 30737226 30737323 -172348209 + MER69 DNA AcHobo 48 144 -2382 398 200 80 0 chr5 30738119 30738219 -172347313 - MLT1H LTR MaLR -3 546 439 275 279 217 0 chr5 30738339 30738468 -172347064 - MLT1H1 LTR MaLR -341 214 58 * 398 256 60 0 chr5 30738440 30738557 -172346975 - MLT1H LTR MaLR -421 128 5 1153 250 21 62 chr5 30738626 30739014 -172346518 + MLT1A2 LTR MaLR 1 372 -2 286 0 91 0 chr5 30739223 30739267 -172346265 + T-rich Low_complexity Low_complexity 4 51 0 1827 152 0 3 chr5 30739278 30739568 -172345964 - AluSx SINE Alu -23 289 1 1702 222 41 3 chr5 30739663 30740084 -172345448 - L1MB7 LINE L1 0 6184 5745 246 275 0 25 chr5 30740076 30740100 -172345432 - L1MA10 LINE L1 -77 6257 6234 * 497 239 46 95 chr5 30740100 30740363 -172345169 - L1ME1 LINE L1 -92 6074 5825 28 95 0 0 chr5 30740363 30740447 -172345085 + AT_rich Low_complexity Low_complexity 1 84 0 335 169 16 12 chr5 30740455 30740542 -172344990 - L1ME1 LINE L1 -354 5812 5724 1281 258 33 10 chr5 30740713 30741108 -172344424 + L1ME1 LINE L1 5747 6150 -16 320 298 60 13 chr5 30741123 30741358 -172344174 + L1M4 LINE L1 4314 4559 -1587 33 56 0 0 chr5 30741409 30741463 -172344069 + AT_rich Low_complexity Low_complexity 1 54 0 995 176 87 128 chr5 30741918 30742050 -172343482 + AluJo SINE Alu 4 140 -162 1937 139 0 16 chr5 30742050 30742360 -172343172 + AluSq SINE Alu 9 313 0 995 176 87 128 chr5 30742360 30742374 -172343158 + AluJo SINE Alu 140 153 -149 195 69 0 0 chr5 30742374 30742403 -172343129 + (CCAA)n Simple_repeat Simple_repeat 4 32 0 995 176 87 128 chr5 30742403 30742567 -172342965 + AluJo SINE Alu 153 302 0 28 48 0 0 chr5 30743171 30743213 -172342319 + AT_rich Low_complexity Low_complexity 1 42 0 433 250 8 53 chr5 30743255 30743499 -172342033 - L1MC5 LINE L1 -124 7837 7605 379 341 89 20 chr5 30743697 30744090 -172341442 + L1MEd LINE L1 786 1205 -5000 1465 183 61 4 chr5 30744130 30744409 -172341123 + AluJb SINE Alu 7 301 -11 1955 70 60 7 chr5 30744522 30744806 -172340726 + AluY SINE Alu 1 299 -12 313 338 27 0 chr5 30744988 30745136 -172340396 + L1MEd LINE L1 1544 1695 -4701 434 333 36 28 chr5 30745454 30745784 -172339748 + L1MEd LINE L1 2167 2458 -3757 2022 117 3 0 chr5 30746134 30746432 -172339100 + AluSc SINE Alu 1 299 -10 180 0 0 0 chr5 30746485 30746505 -172339027 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 636 272 103 57 chr5 30746763 30747697 -172337835 + L1M4 LINE L1 3871 4847 -1299 808 226 36 5 chr5 30747968 30748163 -172337369 - MER20 DNA MER1_type -18 201 1 266 106 0 43 chr5 30748545 30748592 -172336940 + L1ME3A LINE L1 5907 5951 -211 240 281 50 66 chr5 30748652 30748773 -172336759 + L1ME3A LINE L1 5962 6080 -90 227 241 30 83 chr5 30748832 30748965 -172336567 - L1ME4a LINE L1 -57 6064 5939 339 167 21 10 chr5 30749239 30749335 -172336197 + (TA)n Simple_repeat Simple_repeat 2 98 0 25 75 0 0 chr5 30749368 30749421 -172336111 + AT_rich Low_complexity Low_complexity 1 53 0 22 70 0 0 chr5 30749778 30749821 -172335711 + AT_rich Low_complexity Low_complexity 1 43 0 443 254 127 8 chr5 30750445 30750571 -172334961 + Tigger7 DNA MER2_type 20 160 -545 523 147 83 18 chr5 30750590 30750699 -172334833 + Tigger7 DNA MER2_type 2209 2324 -163 654 162 136 13 chr5 30750964 30751118 -172334414 + Tigger7 DNA MER2_type 2313 2485 -2 21 36 0 0 chr5 30752317 30752345 -172333187 + AT_rich Low_complexity Low_complexity 1 28 0 1187 227 30 57 chr5 30752438 30752804 -172332728 + MLT1A1 LTR MaLR 10 365 0 2198 238 72 27 chr5 30752804 30753561 -172331971 + MLT1A1-int LTR MaLR 1 883 -488 2059 188 22 20 chr5 30753911 30754320 -172331212 + MLT1A1-int LTR MaLR 1326 1735 0 1249 220 38 59 chr5 30754320 30754377 -172331155 + MLT1A1 LTR MaLR 1 58 -307 2523 14 0 0 chr5 30754377 30754657 -172330875 - AluYb8 SINE Alu 0 318 39 1249 220 38 59 chr5 30754657 30754972 -172330560 + MLT1A1 LTR MaLR 58 365 0 596 206 73 0 chr5 30755211 30755376 -172330156 - L1MA7 LINE L1 -3 6288 6112 * 785 190 25 50 chr5 30755366 30755566 -172329966 + L1MA7 LINE L1 5931 6125 -166 776 240 17 0 chr5 30757195 30757370 -172328162 + MSTD LTR MaLR 219 396 0 1309 152 33 84 chr5 30757385 30757720 -172327812 - L1PB4 LINE L1 -301 5855 5538 * 2494 192 11 51 chr5 30757713 30758567 -172326965 + L1PB4 LINE L1 4731 5543 -613 2418 114 11 19 chr5 30758982 30759360 -172326172 + THE1C LTR MaLR 1 375 0 4384 203 72 13 chr5 30759370 30759495 -172326037 - L1PB4 LINE L1 -725 5429 5313 234 0 0 0 chr5 30759495 30759521 -172326011 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 4384 203 72 13 chr5 30759521 30760390 -172325142 - L1PB4 LINE L1 -841 5313 4369 198 0 0 0 chr5 30760390 30760412 -172325120 + (TG)n Simple_repeat Simple_repeat 1 22 0 4384 203 72 13 chr5 30760412 30760609 -172324923 - L1PB4 LINE L1 -1785 4369 4185 21 0 0 0 chr5 30760636 30760657 -172324875 + AT_rich Low_complexity Low_complexity 1 21 0 246 302 66 50 chr5 30761154 30761336 -172324196 - L2 LINE L2 -2 3311 3127 541 320 189 36 chr5 30761481 30762038 -172323494 - L2 LINE L2 -437 2877 2236 236 196 0 36 chr5 30762064 30762120 -172323412 + L1P4 LINE L1 5519 5572 -602 230 149 0 0 chr5 30762685 30762732 -172322800 - LTR66 LTR ERVL -170 440 394 390 380 10 10 chr5 30762746 30762954 -172322578 + L1ME3 LINE L1 5683 5890 -272 2150 94 3 3 chr5 30762968 30763255 -172322277 - AluSq SINE Alu -22 291 5 1733 122 107 4 chr5 30763718 30763989 -172321543 - AluSq SINE Alu -14 299 1 2150 132 0 48 chr5 30763989 30764367 -172321165 - L1PA13 LINE L1 -4 6159 5800 1857 129 26 13 chr5 30764445 30764747 -172320785 + AluSx SINE Alu 1 306 -6 314 300 50 25 chr5 30765216 30765336 -172320196 - L2 LINE L2 -219 3053 2931 1513 160 219 17 chr5 30765429 30765785 -172319747 + MSTA LTR MaLR 1 428 0 42 36 0 0 chr5 30766241 30766297 -172319235 + AT_rich Low_complexity Low_complexity 1 56 0 339 320 141 30 chr5 30766299 30766533 -172318999 - MIR SINE MIR 0 262 3 902 329 69 27 chr5 30766576 30767325 -172318207 - L2 LINE L2 -18 3295 2433 307 257 6 18 chr5 30771486 30771598 -172313934 + L1ME LINE L1 5725 5832 -338 245 50 0 25 chr5 30771649 30771689 -172313843 + (TA)n Simple_repeat Simple_repeat 1 39 0 204 154 46 15 chr5 30771859 30771924 -172313608 + (TTATA)n Simple_repeat Simple_repeat 2 68 0 257 254 45 0 chr5 30772230 30772297 -172313235 - L1ME3A LINE L1 -17 6153 6084 300 186 0 0 chr5 30772389 30772448 -172313084 + (TG)n Simple_repeat Simple_repeat 1 59 0 247 250 0 0 chr5 30772489 30772545 -172312987 + (TG)n Simple_repeat Simple_repeat 1 56 0 687 271 142 57 chr5 30772549 30773076 -172312456 - L1ME3A LINE L1 -282 5888 5317 342 280 82 24 chr5 30773540 30773747 -172311785 - L1ME3A LINE L1 -1481 4665 4447 454 326 122 43 chr5 30773795 30773951 -172311581 - L1ME3A LINE L1 -1777 4369 4227 2866 6 0 6 chr5 30773951 30774271 -172311261 - AluYb8 SINE Alu 0 318 1 454 326 122 43 chr5 30774271 30774743 -172310789 - L1ME3A LINE L1 -1919 4227 3691 25 0 0 0 chr5 30775786 30775811 -172309721 + AT_rich Low_complexity Low_complexity 1 25 0 351 280 40 0 chr5 30776512 30776612 -172308920 - MIR SINE MIR -29 233 130 2341 103 0 0 chr5 30777031 30777366 -172308166 - AluSx SINE Alu 0 335 1 713 267 82 55 chr5 30777474 30777872 -172307660 - L1ME LINE L1 -397 5765 5336 314 284 78 51 chr5 30778013 30778258 -172307274 - L1ME LINE L1 -941 5205 4945 2343 97 7 0 chr5 30778258 30778568 -172306964 - AluSx SINE Alu 0 312 1 314 284 78 51 chr5 30778568 30778695 -172306837 - L1ME LINE L1 -1201 4945 4823 23 54 0 0 chr5 30779361 30779398 -172306134 + AT_rich Low_complexity Low_complexity 1 37 0 2314 48 0 83 chr5 30779398 30779734 -172305798 - AluY SINE Alu -3 308 1 56 42 0 11 chr5 30779836 30779860 -172305672 + AT_rich Low_complexity Low_complexity 1 24 -70 1934 159 0 10 chr5 30779860 30780169 -172305363 + AluSx SINE Alu 1 306 -6 56 42 0 11 chr5 30780169 30780239 -172305293 + AT_rich Low_complexity Low_complexity 24 94 0 1758 138 34 20 chr5 30781126 30781424 -172304108 + AluSq SINE Alu 1 302 -11 1307 209 46 114 chr5 30782419 30782637 -172302895 + MLT1D LTR MaLR 12 243 -262 2518 44 0 25 chr5 30782637 30782956 -172302576 + AluY SINE Alu 1 311 0 1307 209 46 114 chr5 30782956 30783263 -172302269 + MLT1D LTR MaLR 243 501 -4 1526 184 86 84 chr5 30785768 30785986 -172299546 - MLT1C LTR MaLR -3 464 248 207 0 0 0 chr5 30785986 30786009 -172299523 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1942 136 0 4 chr5 30786012 30786292 -172299240 - AluSg SINE Alu -31 279 1 1526 184 86 84 chr5 30786292 30786391 -172299141 - MLT1C LTR MaLR -220 247 150 2031 181 36 59 chr5 30786391 30786917 -172298615 - MER67D LTR ERV1 0 514 1 1526 184 86 84 chr5 30786917 30787057 -172298475 - MLT1C LTR MaLR -317 150 1 1442 190 7 49 chr5 30787538 30787843 -172297689 + AluJo SINE Alu 1 292 -20 21 0 0 0 chr5 30788375 30788396 -172297136 + AT_rich Low_complexity Low_complexity 1 21 0 3243 61 42 9 chr5 30789164 30789210 -172296322 - MLT2A1 LTR ERVL 0 444 401 252 0 0 0 chr5 30789210 30789238 -172296294 + (TA)n Simple_repeat Simple_repeat 2 29 0 3243 61 42 9 chr5 30789238 30789619 -172295913 - MLT2A1 LTR ERVL -43 401 3 254 361 162 0 chr5 30789621 30789812 -172295720 - MIR SINE MIR 0 262 41 2126 90 50 10 chr5 30790420 30790720 -172294812 + AluSq SINE Alu 1 312 -1 2711 156 67 27 chr5 30790908 30791472 -172294060 - L1MB1 LINE L1 -14 6175 5589 22 56 0 0 chr5 30792154 30792190 -172293342 + AT_rich Low_complexity Low_complexity 1 36 0 1428 185 26 45 chr5 30792861 30793169 -172292363 + AluJo SINE Alu 1 302 0 206 192 19 0 chr5 30793216 30793268 -172292264 + (TG)n Simple_repeat Simple_repeat 2 54 0 28 48 0 0 chr5 30793498 30793540 -172291992 + AT_rich Low_complexity Low_complexity 1 42 0 1973 175 39 24 chr5 30793685 30794067 -172291465 + MER61D LTR ERV1 114 501 0 16225 197 23 31 chr5 30794950 30799085 -172286447 + L1PA15-16 LINE L1 5 4121 -2728 281 116 14 87 chr5 30799078 30799147 -172286385 + L1PA13 LINE L1 6102 6165 -1 * 642 314 87 28 chr5 30799870 30800384 -172285148 + L2 LINE L2 2528 3082 -231 24717 25 1 0 chr5 30801146 30804095 -172281437 - L1PA2 LINE L1 -1270 4876 1926 7790 16 0 6 chr5 30804095 30805404 -172280128 + L1PA2 LINE L1 4851 6154 -1 21 36 0 0 chr5 30805928 30805956 -172279576 + AT_rich Low_complexity Low_complexity 1 28 0 249 57 0 0 chr5 30806055 30806090 -172279442 + (CA)n Simple_repeat Simple_repeat 2 36 0 1961 162 36 25 chr5 30806117 30806475 -172279057 - THE1B LTR MaLR -2 362 1 6067 106 11 7 chr5 30806954 30808945 -172276587 - L1PA12 LINE L1 0 6819 4818 207 0 0 0 chr5 30808945 30808968 -172276564 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2171 82 7 0 chr5 30808968 30809249 -172276283 - AluY SINE Alu -28 283 1 2268 84 3 0 chr5 30809482 30809769 -172275763 - AluY SINE Alu -23 288 1 6702 233 13 17 chr5 30809769 30811505 -172274027 - L1PA12 LINE L1 -1971 4826 3098 1011 205 17 17 chr5 30811509 30811748 -172273784 - L1P LINE L1 -1668 4478 4240 312 91 0 0 chr5 30811758 30811802 -172273730 + (TA)n Simple_repeat Simple_repeat 2 45 0 10213 222 74 25 chr5 30811802 30814763 -172270769 - L1PA12 LINE L1 -3704 3093 1 2424 73 7 0 chr5 30815342 30815643 -172269889 + AluY SINE Alu 1 303 -8 970 294 52 25 chr5 30816102 30816470 -172269062 + LTR16C LTR ERVL 112 489 -2 2189 109 3 13 chr5 30817092 30817405 -172268127 + AluY SINE Alu 1 310 -1 34 24 0 0 chr5 30818390 30818431 -172267101 + AT_rich Low_complexity Low_complexity 1 41 0 1965 342 67 52 chr5 30818828 30820503 -172265029 + ERVL LTR ERVL 1782 3432 -2332 1522 191 0 66 chr5 30820503 30820822 -172264710 + AluJb SINE Alu 6 303 -9 1965 342 67 52 chr5 30820822 30820838 -172264694 + ERVL LTR ERVL 3432 3446 -2318 2187 188 19 37 chr5 30820838 30821302 -172264230 - MSTB2 LTR MaLR -1 456 1 1965 342 67 52 chr5 30821302 30821742 -172263790 + ERVL LTR ERVL 3446 3944 -1820 2126 149 25 6 chr5 30822808 30823164 -172262368 + THE1B LTR MaLR 1 363 -1 21 71 0 0 chr5 30823683 30823725 -172261807 + AT_rich Low_complexity Low_complexity 1 42 0 308 156 0 26 chr5 30823981 30824058 -172261474 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 213 269 0 0 chr5 30824552 30824604 -172260928 + (TG)n Simple_repeat Simple_repeat 1 52 0 2148 172 36 19 chr5 30824678 30825097 -172260435 + MSTB LTR MaLR 1 426 0 1292 237 51 88 chr5 30825102 30825703 -172259829 + MLT1E2 LTR MaLR 72 624 -2 256 346 92 29 chr5 30825779 30826019 -172259513 + MIR SINE MIR 6 260 -2 275 328 60 0 chr5 30826726 30826860 -172258672 - MER5B DNA MER1_type -30 148 7 27 0 0 0 chr5 30827820 30827847 -172257685 + AT_rich Low_complexity Low_complexity 1 27 0 1948 163 0 0 chr5 30828208 30828509 -172257023 - AluJb SINE Alu -11 301 1 295 241 293 0 chr5 30828661 30828777 -172256755 - MIR SINE MIR -56 206 57 869 277 76 38 chr5 30829008 30829351 -172256181 + MER57A LTR ERV1 42 397 -6 1113 248 78 71 chr5 30829467 30830079 -172255453 + L1M4 LINE L1 2440 3063 -3083 2008 135 6 13 chr5 30830079 30830390 -172255142 + AluSc SINE Alu 1 309 0 1113 248 78 71 chr5 30830390 30830848 -172254684 + L1M4 LINE L1 3063 3517 -2629 278 186 23 58 chr5 30830863 30830949 -172254583 + L1P LINE L1 3595 3677 -2469 771 250 103 25 chr5 30831665 30832061 -172253471 + L1M4 LINE L1 3673 4099 -2047 323 244 64 35 chr5 30832095 30832267 -172253265 + L1M4 LINE L1 4244 4420 -1726 271 258 50 25 chr5 30832339 30832498 -172253034 + L1M4 LINE L1 4590 4752 -1394 1117 211 114 44 chr5 30834184 30834525 -172251007 - MLT1A1 LTR MaLR 0 365 1 1009 247 61 63 chr5 30834640 30835085 -172250447 + MER39 LTR ERV1 246 689 -18 198 316 41 31 chr5 30835942 30836040 -172249492 - L2 LINE L2 -1017 2297 2199 568 196 245 20 chr5 30836535 30836739 -172248793 - MIR SINE MIR -10 252 3 244 277 12 0 chr5 30836994 30837077 -172248455 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 1191 288 46 53 chr5 30837228 30837870 -172247662 + HsTC2a DNA Tc2 14 652 -1248 2116 80 0 57 chr5 30837870 30838218 -172247314 - AluY SINE Alu 0 311 1 1191 288 46 53 chr5 30838218 30838308 -172247224 + HsTC2a DNA Tc2 652 741 -3 182 118 29 0 chr5 30839368 30839402 -172246130 + CT-rich Low_complexity Low_complexity 2 36 0 735 188 65 21 chr5 30841122 30841308 -172244224 + L1MCc LINE L1 41 234 -6189 529 300 52 54 chr5 30841397 30841881 -172243651 + L1MCc LINE L1 1006 1488 -4935 288 302 49 63 chr5 30841894 30841915 -172243617 + L1MCc LINE L1 1505 1525 -5416 13148 40 0 1 chr5 30841915 30844294 -172241238 + L1PA4 LINE L1 3775 6153 -2 288 302 49 63 chr5 30844294 30844903 -172240629 + L1MCc LINE L1 1525 2128 -4813 311 289 102 33 chr5 30844945 30845394 -172240138 + L1MCc LINE L1 2387 2866 -4256 317 317 74 22 chr5 30845428 30845794 -172239738 + L1MCc LINE L1 2999 3383 -3558 1929 173 39 63 chr5 30845843 30845882 -172239650 - MSTB LTR MaLR 0 426 388 1674 170 10 3 chr5 30845882 30846171 -172239361 + AluSx SINE Alu 1 291 -21 1929 173 39 63 chr5 30846171 30846542 -172238990 - MSTB LTR MaLR -38 388 26 552 246 78 50 chr5 30846548 30846961 -172238571 + L1MCc LINE L1 3507 3940 -3001 2011 114 20 27 chr5 30846961 30847259 -172238273 + AluSc SINE Alu 1 296 -13 552 246 78 50 chr5 30847259 30847369 -172238163 + L1MCc LINE L1 3940 4045 -2896 3624 197 29 3 chr5 30847402 30848119 -172237413 - L1PA16 LINE L1 -16 6150 5415 * 9329 225 43 55 chr5 30848111 30851243 -172234289 - L1 LINE L1 -752 6097 3003 36087 97 12 9 chr5 30851252 30857382 -172228150 - L1PA6 LINE L1 -1 6153 11 758 167 36 17 chr5 30857359 30857565 -172227967 - L1PA15-16 LINE L1 -3820 2326 2118 * 1607 218 6 0 chr5 30857555 30857871 -172227661 - L1PA15-16 LINE L1 -4229 2620 2303 468 268 7 0 chr5 30857873 30858011 -172227521 + L1 LINE L1 3346 3484 -2662 1127 267 14 6 chr5 30858024 30858380 -172227152 - L1PA15-16 LINE L1 -4560 2289 1931 404 368 78 45 chr5 30859196 30859712 -172225820 - L1PA15-16 LINE L1 -6175 664 132 865 168 84 35 chr5 30859851 30860053 -172225479 - L1MA7 LINE L1 -171 6120 5909 767 178 35 0 chr5 30860053 30860222 -172225310 + L1MA7 LINE L1 6113 6287 -4 1172 271 82 20 chr5 30860228 30860840 -172224692 + L1M4 LINE L1 4328 4977 -1169 338 294 85 68 chr5 30860931 30861285 -172224247 - L1M4 LINE L1 -795 5351 4992 1752 170 40 30 chr5 30862590 30862961 -172222571 - THE1C LTR MaLR 0 375 1 8891 147 11 36 chr5 30862961 30864578 -172220954 - THE1C-int LTR MaLR 0 1580 4 1382 192 54 40 chr5 30864582 30864952 -172220580 - THE1C LTR MaLR 0 375 1 576 286 102 29 chr5 30865343 30865588 -172219944 - MLT1D LTR MaLR -3 502 240 1795 228 71 9 chr5 30865592 30866013 -172219519 + LOR1b LTR ERV1 11 457 -4 510 232 46 87 chr5 30866017 30866258 -172219274 - MLT1D LTR MaLR -272 233 3 5039 185 43 8 chr5 30866518 30867621 -172217911 - L1MA5 LINE L1 -2 7319 6181 219 36 0 0 chr5 30867621 30867649 -172217883 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 2026 118 0 0 chr5 30867649 30867929 -172217603 - AluY SINE Alu -28 283 4 6596 240 94 15 chr5 30867940 30870333 -172215199 - L1MA5 LINE L1 -2377 4790 1969 1474 211 3 0 chr5 30870333 30870622 -172214910 - AluJo SINE Alu -20 292 3 6596 240 94 15 chr5 30870622 30872007 -172213525 - L1MA5 LINE L1 -5198 1969 695 434 343 6 39 chr5 30872015 30872193 -172213339 - L1MA5 LINE L1 -6333 835 664 21 57 0 0 chr5 30872433 30872468 -172213064 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr5 30872523 30872551 -172212981 + AT_rich Low_complexity Low_complexity 1 28 0 414 0 0 0 chr5 30873067 30873113 -172212419 + (CA)n Simple_repeat Simple_repeat 2 47 0 4876 182 29 13 chr5 30873494 30874796 -172210736 + L1PA16 LINE L1 4833 6157 -9 21 0 0 0 chr5 30874796 30874817 -172210715 + AT_rich Low_complexity Low_complexity 1 21 0 1377 202 52 3 chr5 30874830 30875117 -172210415 + MLT2D LTR ERVL 9 309 -105 251 355 27 0 chr5 30875142 30875252 -172210280 + MLT1I LTR MaLR 26 138 -271 328 275 64 0 chr5 30875377 30875486 -172210046 + MLT1I LTR MaLR 294 409 0 278 375 64 27 chr5 30875547 30876029 -172209503 + ERVL LTR ERVL 1506 2005 -3759 195 42 0 0 chr5 30876186 30876210 -172209322 + (TA)n Simple_repeat Simple_repeat 2 25 0 836 281 40 16 chr5 30876343 30876596 -172208936 + ERVL LTR ERVL 2272 2530 -3124 279 354 49 22 chr5 30876955 30877178 -172208354 + ERVL LTR ERVL 2857 3085 -2569 1683 6 0 0 chr5 30877927 30878110 -172207422 - AluYa5 SINE Alu -128 183 1 333 347 33 49 chr5 30878352 30878802 -172206730 - L1M4 LINE L1 -2691 3455 3013 21 0 0 0 chr5 30878986 30879007 -172206525 + AT_rich Low_complexity Low_complexity 1 21 0 297 211 39 44 chr5 30879113 30879293 -172206239 + (TA)n Simple_repeat Simple_repeat 2 180 0 388 67 4 32 chr5 30879526 30879589 -172205943 + MLT2A1 LTR ERVL 391 444 0 34 0 0 0 chr5 30879608 30879642 -172205890 + AT_rich Low_complexity Low_complexity 1 34 0 2990 91 8 0 chr5 30879695 30880092 -172205440 - MLT2A1 LTR ERVL -40 404 5 4805 140 61 3 chr5 30880146 30880986 -172204546 + L1P3 LINE L1 4 794 -5352 5949 52 18 4 chr5 30880986 30881754 -172203778 + L1PA5 LINE L1 5368 6151 -3 4805 140 61 3 chr5 30881754 30881768 -172203764 + L1P3 LINE L1 794 3783 -2363 237 33 0 0 chr5 30882081 30882111 -172203421 + (TG)n Simple_repeat Simple_repeat 2 31 0 180 77 0 0 chr5 30882441 30882467 -172203065 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 23 33 0 0 chr5 30883885 30883915 -172201617 + AT_rich Low_complexity Low_complexity 1 30 0 243 365 0 0 chr5 30884024 30884128 -172201404 - L1 LINE L1 -1983 4163 4060 37 90 0 0 chr5 30884886 30884986 -172200546 + AT_rich Low_complexity Low_complexity 1 100 0 492 272 84 10 chr5 30885687 30885889 -172199643 + L1MD3 LINE L1 6990 7206 -789 442 246 31 0 chr5 30885896 30886026 -172199506 + MLT1F1 LTR MaLR 1 134 -433 1143 273 37 5 chr5 30886026 30886435 -172199097 + L1MD3 LINE L1 7236 7703 -125 2260 113 8 31 chr5 30886717 30887070 -172198462 - THE1B LTR MaLR -19 345 1 218 300 14 0 chr5 30887781 30887851 -172197681 + GA-rich Low_complexity Low_complexity 1 71 0 1719 190 10 70 chr5 30888553 30888968 -172196564 + MLT1B LTR MaLR 1 390 0 750 140 0 0 chr5 30889583 30889697 -172195835 - AluSp/q SINE Alu -12 301 188 2004 141 0 3 chr5 30889775 30890081 -172195451 - AluSx SINE Alu -7 305 1 206 250 11 68 chr5 30890225 30890313 -172195219 - MIR SINE MIR -56 206 124 22 35 0 0 chr5 30890849 30890878 -172194654 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr5 30891323 30891344 -172194188 + AT_rich Low_complexity Low_complexity 1 21 0 211 313 123 31 chr5 30891495 30891690 -172193842 + MIR SINE MIR 48 260 -2 1952 62 0 33 chr5 30892030 30892304 -172193228 - L1PA7 LINE L1 0 6154 5890 409 358 48 60 chr5 30892379 30892784 -172192748 - L2 LINE L2 -148 3165 2768 268 337 32 0 chr5 30892792 30892887 -172192645 + MIR SINE MIR 1 98 -164 204 211 0 0 chr5 30893617 30893655 -172191877 + (CA)n Simple_repeat Simple_repeat 2 39 0 384 325 106 56 chr5 30894067 30894424 -172191108 + L1MEd LINE L1 407 781 -5338 318 349 59 21 chr5 30894579 30894817 -172190715 + HAL1 LINE L1 195 441 -2066 2243 127 3 0 chr5 30894820 30895144 -172190388 + L1PB1 LINE L1 5797 6121 -30 21 36 0 0 chr5 30895359 30895387 -172190145 + AT_rich Low_complexity Low_complexity 1 28 0 265 302 101 41 chr5 30895428 30895597 -172189935 + HAL1 LINE L1 743 921 -1586 2757 48 6 14 chr5 30895646 30896002 -172189530 + L1PA5 LINE L1 5797 6149 -5 399 295 58 7 chr5 30896044 30896183 -172189349 - L1ME LINE L1 -2025 4357 4212 * 556 316 21 24 chr5 30896176 30896505 -172189027 - L1ME LINE L1 -3801 2581 2321 21 36 0 0 chr5 30896696 30896724 -172188808 + AT_rich Low_complexity Low_complexity 1 28 0 267 292 67 48 chr5 30896758 30897382 -172188150 - L1ME LINE L1 -4559 2004 1266 198 0 0 0 chr5 30897393 30897415 -172188117 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 4200 146 6 22 chr5 30897415 30898089 -172187443 - L1PA16 LINE L1 -11 6155 5492 2252 107 0 0 chr5 30898089 30898387 -172187145 - AluY SINE Alu -12 299 2 4200 146 6 22 chr5 30898387 30898437 -172187095 - L1PA16 LINE L1 -674 5492 5443 2029 207 47 6 chr5 30898437 30898905 -172186627 + L1P LINE L1 4561 5047 -1099 879 240 64 43 chr5 30900094 30900413 -172185119 - L1MB7 LINE L1 0 6184 5868 2245 112 0 0 chr5 30900443 30900746 -172184786 - AluSx SINE Alu -9 303 1 281 335 23 40 chr5 30901914 30902087 -172183445 - MIR SINE MIR 0 262 93 1397 306 3 67 chr5 30902218 30902548 -172182984 + AluSx SINE Alu 1 309 -3 184 317 48 39 chr5 30902712 30902816 -172182716 - L2 LINE L2 -14 3299 3195 2255 107 0 0 chr5 30903899 30904208 -172181324 + AluSg SINE Alu 1 309 -1 32 57 0 0 chr5 30905234 30905287 -172180245 + AT_rich Low_complexity Low_complexity 1 53 0 913 136 19 7 chr5 30905778 30905932 -172179600 + L1PB2 LINE L1 5993 6148 -3 786 272 15 0 chr5 30906068 30906274 -172179258 + MER3 DNA MER1_type 1 209 0 1389 275 50 44 chr5 30906973 30907831 -172177701 + L1PB4 LINE L1 4 2105 -4925 8373 222 71 36 chr5 30907933 30909005 -172176527 + L1PB4 LINE L1 2350 3382 -3724 1981 155 0 0 chr5 30909005 30909301 -172176231 - AluSx SINE Alu -16 296 1 8373 222 71 36 chr5 30909301 30909756 -172175776 + L1PB4 LINE L1 3382 3819 -3287 2191 120 0 0 chr5 30909756 30910064 -172175468 + AluSg SINE Alu 1 308 -2 8373 222 71 36 chr5 30910064 30911810 -172173722 + L1PB4 LINE L1 3819 6158 -948 2530 205 23 4 chr5 30912460 30913016 -172172516 + L1PB4 LINE L1 6550 7116 0 235 270 16 0 chr5 30913138 30913201 -172172331 + MLT1F1 LTR MaLR 44 107 -460 4630 93 1 30 chr5 30913244 30913335 -172172197 + PABL_A LTR ERV1 1 93 -567 2262 92 3 0 chr5 30913335 30913638 -172171894 + AluSx SINE Alu 1 304 -8 4630 93 1 30 chr5 30913638 30914225 -172171307 + PABL_A LTR ERV1 93 660 0 2509 191 28 8 chr5 30914251 30914749 -172170783 + L1MC3 LINE L1 7260 7767 -18 598 188 15 53 chr5 30914967 30915100 -172170432 - FLAM_A SINE Alu -5 128 1 22 35 0 0 chr5 30916626 30916655 -172168877 + AT_rich Low_complexity Low_complexity 1 29 0 5198 118 14 1 chr5 30916974 30917751 -172167781 + L1PA13 LINE L1 5370 6156 -7 1422 220 28 43 chr5 30918821 30919217 -172166315 + MLT1B LTR MaLR 1 390 0 31 44 0 0 chr5 30919624 30919669 -172165863 + AT_rich Low_complexity Low_complexity 1 45 0 234 200 8 56 chr5 30919682 30919807 -172165725 + A-rich Low_complexity Low_complexity 1 119 0 248 254 18 0 chr5 30920037 30920092 -172165440 - L2 LINE L2 0 3313 3258 199 325 35 44 chr5 30920339 30920453 -172165079 + MIR SINE MIR 27 139 -123 3568 121 27 17 chr5 30920751 30921338 -172164194 + MER4E LTR ERV1 1 593 -173 514 121 17 35 chr5 30971338 30971454 -172114078 + AluYb8 SINE Alu 205 318 0 969 267 4 24 chr5 30971459 30971710 -172113822 - MLT2B1 LTR ERVL -274 246 1 949 369 42 14 chr5 30971936 30972556 -172112976 - HERV16 LTR ERVL -2249 2747 2111 921 193 10 0 chr5 30972733 30972925 -172112607 - L1M4c LINE L1 -4874 1510 1317 4239 196 7 14 chr5 30972934 30973746 -172111786 + Tigger1 DNA MER2_type 1 807 -1611 3161 242 33 33 chr5 30973894 30974910 -172110622 + L1M3 LINE L1 4417 5434 -737 2044 173 53 9 chr5 30974910 30975360 -172110172 + L1PA15 LINE L1 5693 6162 -3 340 98 233 0 chr5 30975525 30975658 -172109874 - AluYa8 SINE Alu -136 164 1 415 226 219 20 chr5 30975736 30975882 -172109650 - AluY SINE Alu 0 311 137 235 234 21 0 chr5 30975901 30975948 -172109584 + MLT2B1 LTR ERVL 303 350 -170 556 200 10 0 chr5 30976010 30976110 -172109422 + MLT2B1 LTR ERVL 342 442 -78 351 0 0 0 chr5 30976111 30976150 -172109382 + (TG)n Simple_repeat Simple_repeat 1 39 0 24 53 0 0 chr5 30977265 30977303 -172108229 + AT_rich Low_complexity Low_complexity 1 38 0 260 172 17 0 chr5 30977511 30977569 -172107963 + (TA)n Simple_repeat Simple_repeat 1 59 0 253 222 0 71 chr5 30977569 30977668 -172107864 - L1MC4 LINE L1 -1339 6703 6612 258 239 18 46 chr5 30977668 30977777 -172107755 + (TATATG)n Simple_repeat Simple_repeat 5 110 0 1176 92 0 0 chr5 30977998 30978162 -172107370 + Tigger1 DNA MER2_type 804 967 -1451 5392 210 19 11 chr5 30978167 30979304 -172106228 + Tigger1 DNA MER2_type 1265 2410 -8 4980 202 44 56 chr5 30979327 30980620 -172104912 - L1M4c LINE L1 -5093 1291 14 187 409 94 6 chr5 30980958 30981117 -172104415 - L2 LINE L2 -295 2977 2805 24 53 0 0 chr5 30981560 30981598 -172103934 + AT_rich Low_complexity Low_complexity 1 38 0 205 222 0 19 chr5 30981636 30981690 -172103842 + (TTATA)n Simple_repeat Simple_repeat 2 54 0 224 57 0 29 chr5 30981762 30981797 -172103735 + (TA)n Simple_repeat Simple_repeat 2 35 0 421 139 63 0 chr5 30981869 30981948 -172103584 - LTR54 LTR ERV1 -40 470 387 453 200 0 11 chr5 30981949 30982044 -172103488 + L1M4 LINE L1 5345 5438 -740 257 241 0 0 chr5 30982065 30982119 -172103413 + L1M4c LINE L1 294 347 -6299 2440 248 113 33 chr5 30982533 30983784 -172101748 + L1M4c LINE L1 825 2165 -4481 2088 126 0 7 chr5 30984080 30984374 -172101158 - AluSc SINE Alu -15 294 3 1229 195 132 0 chr5 30985426 30985698 -172099834 + MLT2C1 LTR ERVL 1 308 -89 239 36 36 55 chr5 30985824 30985879 -172099653 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 3422 225 31 25 chr5 30985945 30986819 -172098713 + MLT1-int LTR MaLR 4 882 -489 2858 52 11 0 chr5 30986954 30987319 -172098213 - L1PA4 LINE L1 -3 6152 5784 26 50 0 0 chr5 30987457 30987497 -172098035 + AT_rich Low_complexity Low_complexity 1 40 0 1029 236 63 53 chr5 30987613 30987942 -172097590 - L1ME3A LINE L1 -180 5990 5655 324 0 0 0 chr5 30987942 30987978 -172097554 + (TG)n Simple_repeat Simple_repeat 2 37 0 1029 236 63 53 chr5 30987978 30988046 -172097486 - L1ME3A LINE L1 -515 5655 5589 223 274 96 67 chr5 30988253 30988487 -172097045 + L2 LINE L2 2929 3216 -97 285 359 0 62 chr5 30988635 30988780 -172096752 + MIR SINE MIR 26 161 -101 2149 114 0 0 chr5 30989123 30989421 -172096111 - AluSg SINE Alu 0 310 13 3334 109 6 0 chr5 30989472 30989967 -172095565 - L1MA1 LINE L1 -1 6301 5804 978 223 47 37 chr5 30990092 30990392 -172095140 - L1MB8 LINE L1 -173 6005 5703 724 214 13 13 chr5 30990467 30990626 -172094906 - L1MB8 LINE L1 -1981 4165 4007 23 33 0 0 chr5 30991047 30991077 -172094455 + AT_rich Low_complexity Low_complexity 1 30 0 404 318 33 14 chr5 30991175 30991389 -172094143 - LTR16A1 LTR ERVL 0 457 240 22 0 0 0 chr5 30991691 30991713 -172093819 + AT_rich Low_complexity Low_complexity 1 22 0 1933 128 3 20 chr5 30992570 30992874 -172092658 - AluSg SINE Alu -8 302 4 24 32 0 0 chr5 30993090 30993121 -172092411 + AT_rich Low_complexity Low_complexity 1 31 0 865 267 22 13 chr5 30993330 30993555 -172091977 - MLT1A1 LTR MaLR 0 365 139 1524 233 46 35 chr5 30993668 30993937 -172091595 + MLT1C LTR MaLR 3 268 -199 311 0 0 25 chr5 30993937 30993977 -172091555 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1524 233 46 35 chr5 30993977 30994022 -172091510 + MLT1C LTR MaLR 268 311 -156 2024 117 7 3 chr5 30994022 30994320 -172091212 - AluSc SINE Alu -8 301 3 1524 233 46 35 chr5 30994320 30994464 -172091068 + MLT1C LTR MaLR 311 467 0 1914 134 57 33 chr5 30994505 30994871 -172090661 - THE1C LTR MaLR 0 375 1 1629 184 21 91 chr5 30995066 30995485 -172090047 + MLT1B LTR MaLR 1 390 0 351 218 0 79 chr5 30995671 30995772 -172089760 + MIR SINE MIR 167 259 -3 29 78 0 0 chr5 30996816 30996880 -172088652 + AT_rich Low_complexity Low_complexity 1 64 0 231 246 8 157 chr5 30996880 30997014 -172088518 - MER58B DNA MER1_type -4 337 224 21 0 0 0 chr5 30997647 30997668 -172087864 + AT_rich Low_complexity Low_complexity 1 21 0 340 291 33 74 chr5 30997982 30998226 -172087306 + L1M4 LINE L1 4384 4617 -1529 324 320 11 11 chr5 30998777 30998952 -172086580 + L1MEc LINE L1 1581 1755 -4641 386 259 68 63 chr5 30999086 30999291 -172086241 + L1MEc LINE L1 3194 3399 -2816 398 373 71 25 chr5 30999292 30999646 -172085886 - L2 LINE L2 -1257 2057 1688 452 316 25 31 chr5 31001235 31001431 -172084101 + L1MC4 LINE L1 6765 6959 -1083 1491 119 9 9 chr5 31001713 31001931 -172083601 + AluSx SINE Alu 62 279 -33 289 119 0 0 chr5 31001931 31001973 -172083559 + AluSc SINE Alu 160 201 -98 504 136 144 42 chr5 31001973 31002091 -172083441 + AluSg/x SINE Alu 170 299 -11 21 36 0 0 chr5 31002240 31002268 -172083264 + AT_rich Low_complexity Low_complexity 1 28 0 1421 269 10 2 chr5 31002291 31002685 -172082847 + L1MEc LINE L1 3857 4253 -1962 5762 79 2 7 chr5 31002855 31004203 -172081329 - L1PA4 LINE L1 -135 6020 4681 1228 276 21 42 chr5 31004217 31004714 -172080818 + MLT1C-int LTR MaLR 962 1735 0 732 269 153 28 chr5 31004767 31005127 -172080405 + MLT1C LTR MaLR 59 463 -4 422 281 0 0 chr5 31005373 31005504 -172080028 - L1MA10 LINE L1 -2 6332 6043 270 300 34 101 chr5 31006492 31006583 -172078949 + L1MC3 LINE L1 -100 4294967292 -5911 2816 167 0 4 chr5 31006583 31007075 -172078457 + L1PA15 LINE L1 5673 6162 -3 270 300 34 101 chr5 31007075 31007250 -172078282 + L1MC3 LINE L1 -4 148 -5759 288 215 140 32 chr5 31007284 31007377 -172078155 + L1MC3 LINE L1 276 378 -5529 1876 99 7 24 chr5 31007398 31007690 -172077842 - MER51C LTR ERV1 0 640 354 486 254 93 8 chr5 31007695 31007963 -172077569 + L1MC3 LINE L1 1841 2235 -4372 21 71 0 0 chr5 31007973 31008015 -172077517 + AT_rich Low_complexity Low_complexity 1 42 0 889 267 95 39 chr5 31008015 31008604 -172076928 + L1MC3 LINE L1 3143 3764 -2662 230 247 32 43 chr5 31008591 31008684 -172076848 + L1MC3 LINE L1 4907 4998 -1428 * 998 203 52 12 chr5 31008684 31009064 -172076468 + L1MC3 LINE L1 5420 5811 -743 * 2541 223 87 3 chr5 31009062 31009730 -172075802 + L1MC3 LINE L1 6191 6914 -1151 962 226 42 38 chr5 31009738 31010003 -172075529 - MER76 LTR ERV -8 680 415 905 280 89 35 chr5 31010104 31010507 -172075025 - MER76 LTR ERV -263 425 1 1035 194 15 20 chr5 31010508 31010709 -172074823 + L1MC3 LINE L1 6911 7110 -955 1002 205 48 4 chr5 31011217 31011485 -172074047 + L1MC3 LINE L1 7108 7387 -678 288 119 45 45 chr5 31011485 31011552 -172073980 - MLT1B LTR MaLR 0 390 324 210 158 0 0 chr5 31011858 31011896 -172073636 + A-rich Low_complexity Low_complexity 1 38 0 1857 280 39 17 chr5 31011917 31012564 -172072968 + L1MB3 LINE L1 5475 6135 -48 774 254 27 11 chr5 31012905 31013090 -172072442 - MER58A DNA MER1_type 0 224 37 630 338 43 23 chr5 31013241 31013640 -172071892 + MLT1I LTR MaLR 1 407 -2 4333 195 37 9 chr5 31014145 31014661 -172070871 - L1MA9 LINE L1 0 6312 5757 243 88 0 0 chr5 31014661 31014695 -172070837 + (TG)n Simple_repeat Simple_repeat 2 35 0 4333 195 37 9 chr5 31014695 31015094 -172070438 - L1MA9 LINE L1 -555 5757 5371 359 360 36 0 chr5 31015141 31015252 -172070280 - L1M2a LINE L1 -6739 429 315 913 156 0 11 chr5 31015383 31015562 -172069970 + CT-rich Low_complexity Low_complexity 4 180 0 195 157 0 0 chr5 31015565 31015616 -172069916 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 901 186 34 0 chr5 31015627 31015804 -172069728 - AluSg/x SINE Alu 0 312 130 26 30 0 0 chr5 31016360 31016393 -172069139 + AT_rich Low_complexity Low_complexity 1 33 0 1884 106 40 7 chr5 31017207 31017513 -172068019 + AluSx SINE Alu 1 315 0 26 30 0 0 chr5 31017877 31017910 -172067622 + AT_rich Low_complexity Low_complexity 1 33 0 312 240 0 13 chr5 31018254 31018329 -172067203 - MIR SINE MIR -16 246 173 1457 257 33 38 chr5 31018474 31019022 -172066510 - LTR55 LTR ERV -2 546 2 201 39 0 0 chr5 31019114 31019140 -172066392 + (GA)n Simple_repeat Simple_repeat 1 26 0 1346 213 78 27 chr5 31019337 31019708 -172065824 - MLT1B LTR MaLR 0 390 1 339 44 0 0 chr5 31019801 31019846 -172065686 + (TG)n Simple_repeat Simple_repeat 2 46 0 328 289 58 10 chr5 31020413 31020517 -172065015 - L2 LINE L2 -36 3277 3169 3338 182 72 49 chr5 31021311 31022169 -172063363 + L1MC3 LINE L1 6895 7772 -13 184 255 0 0 chr5 31023021 31023068 -172062464 - L2 LINE L2 0 3313 3267 4760 154 26 27 chr5 31023900 31024871 -172060661 - L1PA16 LINE L1 -10 6156 5185 338 299 97 61 chr5 31025454 31025847 -172059685 + MLT1G1 LTR MaLR 1 432 -110 1982 84 29 42 chr5 31025847 31026156 -172059376 + AluSg1 SINE Alu 1 305 -4 338 299 97 61 chr5 31026156 31026238 -172059294 + MLT1G1 LTR MaLR 432 510 -32 1941 141 44 36 chr5 31026398 31026759 -172058773 + THE1B LTR MaLR 1 364 0 2108 130 3 0 chr5 31026786 31027094 -172058438 - AluSg SINE Alu -1 309 1 2368 70 26 0 chr5 31027465 31027767 -172057765 - AluY SINE Alu -1 310 1 702 235 25 6 chr5 31027971 31028133 -172057399 - MIR SINE MIR -2 260 96 24 0 0 0 chr5 31028559 31028583 -172056949 + AT_rich Low_complexity Low_complexity 1 24 0 5735 98 9 1 chr5 31028644 31029471 -172056061 - L1PA13 LINE L1 -1 6162 5330 4120 175 21 2 chr5 31029477 31030284 -172055248 + L1PA13 LINE L1 4542 5363 -783 372 22 0 0 chr5 31030686 31030731 -172054801 + (CA)n Simple_repeat Simple_repeat 2 46 0 228 67 0 0 chr5 31032145 31032175 -172053357 + (TG)n Simple_repeat Simple_repeat 1 30 0 313 299 72 24 chr5 31032385 31032552 -172052980 - L1MEc LINE L1 -2734 3481 3307 933 228 12 69 chr5 31032564 31032703 -172052829 - L1ME2 LINE L1 -208 5956 5811 1984 145 3 0 chr5 31032703 31033014 -172052518 - AluSx SINE Alu 0 312 1 933 228 12 69 chr5 31033014 31033207 -172052325 - L1ME2 LINE L1 -353 5811 5643 1812 158 3 0 chr5 31033213 31033510 -172052022 + AluSx SINE Alu 1 298 -14 501 223 154 47 chr5 31033833 31034066 -172051466 - L1MEc LINE L1 -4558 1838 1581 1819 188 0 3 chr5 31034197 31034506 -172051026 - AluJb SINE Alu -4 308 1 1081 203 14 5 chr5 31034506 31034794 -172050738 - MLT1B LTR MaLR -59 331 3 345 188 25 12 chr5 31034795 31034875 -172050657 + MLT1B LTR MaLR 191 271 -119 2240 267 150 46 chr5 31034941 31036624 -172048908 + L1M4 LINE L1 3341 5199 -947 1007 246 38 55 chr5 31036644 31037043 -172048489 - LTR52 LTR ERVL -22 399 8 3154 205 50 15 chr5 31037046 31037944 -172047588 + L1PA16 LINE L1 5198 6157 -9 198 217 0 0 chr5 31038249 31038295 -172047237 - L3 LINE CR1 -874 703 658 21 0 0 0 chr5 31038850 31038871 -172046661 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr5 31039315 31039357 -172046175 + AT_rich Low_complexity Low_complexity 1 42 0 241 250 16 16 chr5 31040147 31040211 -172045321 + L1MEd LINE L1 565 628 -5491 1604 205 106 14 chr5 31040367 31040792 -172044740 - MLT1C LTR MaLR -3 464 1 336 297 67 55 chr5 31040824 31041230 -172044302 + L1MEd LINE L1 895 1646 -844 239 266 91 45 chr5 31041279 31041433 -172044099 - L2 LINE L2 -2418 896 736 1385 178 36 88 chr5 31041528 31041939 -172043593 - MLT1B LTR MaLR 0 390 1 411 263 87 76 chr5 31042341 31042442 -172043090 + LTR37B LTR ERV1 1 99 -369 1539 238 79 2 chr5 31042442 31042874 -172042658 + MLT1C LTR MaLR 3 467 0 411 263 87 76 chr5 31042874 31043152 -172042380 + LTR37B LTR ERV1 99 384 -84 1029 235 110 134 chr5 31043160 31043624 -172041908 - LTR40a LTR ERVL -2 460 8 198 128 0 0 chr5 31043691 31043730 -172041802 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 406 182 0 0 chr5 31043743 31043809 -172041723 + MLT1A1 LTR MaLR 1 66 -299 1352 225 11 4 chr5 31043811 31044091 -172041441 - MLT1A1-int LTR MaLR -1452 283 2 676 265 70 30 chr5 31044095 31044325 -172041207 - MLT1A1 LTR MaLR -2 363 125 1928 245 48 35 chr5 31044325 31045127 -172040405 + MLT1A1-int LTR MaLR 748 1735 0 1536 226 3 13 chr5 31045127 31045445 -172040087 + MLT1A1 LTR MaLR 1 315 -50 2897 34 3 0 chr5 31045449 31045802 -172039730 + L1PA4 LINE L1 5802 6155 0 1048 230 9 0 chr5 31045805 31046018 -172039514 + MLT1A1 LTR MaLR 144 358 -7 2027 153 117 5 chr5 31046018 31046403 -172039129 - MSTA LTR MaLR 0 428 1 580 254 0 0 chr5 31047300 31047438 -172038094 + L1M4 LINE L1 -248 4294967185 -6391 186 103 0 0 chr5 31047438 31047467 -172038065 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 2071 122 0 0 chr5 31047469 31047756 -172037776 - AluSq SINE Alu -25 288 2 1666 251 17 37 chr5 31047757 31048275 -172037257 + L1M4 LINE L1 -124 383 -5897 1282 214 98 11 chr5 31048278 31048634 -172036898 + L1M4 LINE L1 489 875 -5405 352 219 10 0 chr5 31048643 31048739 -172036793 + L1M4 LINE L1 916 1012 -5268 773 237 71 120 chr5 31048741 31049150 -172036382 - MSTD LTR MaLR -7 389 1 218 216 52 15 chr5 31049219 31049353 -172036179 + (TATAA)n Simple_repeat Simple_repeat 1 139 0 447 225 22 77 chr5 31049353 31049504 -172036028 + L1M4 LINE L1 1075 1224 -5056 2046 119 7 3 chr5 31049504 31049807 -172035725 + AluSg SINE Alu 1 304 -6 447 225 22 77 chr5 31049807 31049890 -172035642 + L1M4 LINE L1 1224 1310 -4970 522 167 50 67 chr5 31049892 31050012 -172035520 - MER76 LTR ERV -2 686 569 5141 257 75 65 chr5 31050276 31052660 -172032872 + L1M4 LINE L1 1553 3912 -2470 2156 122 0 10 chr5 31052660 31052963 -172032569 - AluSg SINE Alu -10 300 1 5141 257 75 65 chr5 31052963 31053922 -172031610 + L1M4 LINE L1 3912 5041 -1341 2409 134 3 18 chr5 31053922 31054303 -172031229 + THE1C LTR MaLR 1 375 0 5141 257 75 65 chr5 31054303 31054776 -172030756 + L1M4 LINE L1 5041 5508 -874 1122 94 0 35 chr5 31054799 31054969 -172030563 + L1PA8A LINE L1 5914 6077 -54 596 297 74 8 chr5 31055069 31055459 -172030073 + L1MB7 LINE L1 2085 2500 -3884 3160 226 33 20 chr5 31055470 31056312 -172029220 + L1MB7 LINE L1 5534 6386 -34 456 314 91 32 chr5 31057556 31057808 -172027724 + L2 LINE L2 2699 2965 -349 2511 115 14 0 chr5 31057837 31058203 -172027329 - THE1C LTR MaLR 0 375 5 9399 129 38 13 chr5 31058203 31059743 -172025789 - THE1C-int LTR MaLR 0 1580 2 2286 143 8 0 chr5 31059744 31060116 -172025416 - THE1C LTR MaLR 0 375 1 202 247 0 24 chr5 31061890 31061975 -172023557 + CT-rich Low_complexity Low_complexity 2 84 0 537 234 28 0 chr5 31062402 31062547 -172022985 - L1MA10 LINE L1 -1 6333 6185 * 634 247 46 42 chr5 31062538 31062777 -172022755 - L1ME2 LINE L1 -174 5990 5751 2652 48 0 0 chr5 31062965 31063276 -172022256 + AluY SINE Alu 1 311 0 318 101 0 130 chr5 31064148 31064217 -172021315 + HY4 scRNA scRNA 34 93 0 24 0 0 0 chr5 31064217 31064241 -172021291 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr5 31065505 31065529 -172020003 + AT_rich Low_complexity Low_complexity 1 24 0 207 347 54 54 chr5 31066498 31066645 -172018887 - MIR3 SINE MIR -55 153 7 180 421 7 21 chr5 31067396 31067536 -172017996 - L3 LINE CR1 -855 722 585 23 0 0 0 chr5 31067866 31067889 -172017643 + AT_rich Low_complexity Low_complexity 1 23 0 1199 264 52 92 chr5 31068387 31069005 -172016527 - MLT1E LTR MaLR 0 593 1 198 0 0 0 chr5 31069223 31069245 -172016287 + (TC)n Simple_repeat Simple_repeat 1 22 0 782 220 117 7 chr5 31069280 31069571 -172015961 - MER33 DNA MER1_type -1 323 1 945 324 27 38 chr5 31069610 31070057 -172015475 + L1MA6 LINE L1 1542 1983 -5503 4451 233 74 49 chr5 31070394 31073373 -172012159 + L1MA6 LINE L1 1929 5002 -2563 * 4504 186 47 33 chr5 31073363 31075330 -172010202 + L1MA6 LINE L1 5718 7717 -2 21 0 0 0 chr5 31075338 31075359 -172010173 + AT_rich Low_complexity Low_complexity 1 21 0 1500 184 88 25 chr5 31075528 31075881 -172009651 - THE1C LTR MaLR 0 375 1 6997 158 32 8 chr5 31076222 31077491 -172008041 - HSMAR2 DNA Mariner -1 1301 2 29 0 0 0 chr5 31077654 31077683 -172007849 + AT_rich Low_complexity Low_complexity 1 29 0 263 222 69 0 chr5 31077712 31077784 -172007748 + L1M2 LINE L1 5106 5182 -964 1873 127 66 61 chr5 31077784 31078146 -172007386 + THE1B LTR MaLR 1 364 0 8218 122 17 2 chr5 31078173 31079422 -172006110 + THE1B-int LTR MaLR 15 1281 -299 866 163 11 37 chr5 31079528 31079718 -172005814 + L1M2 LINE L1 5258 5442 -858 22 0 0 0 chr5 31079770 31079792 -172005740 + AT_rich Low_complexity Low_complexity 1 22 0 253 256 23 12 chr5 31079886 31079972 -172005560 + (TATATG)n Simple_repeat Simple_repeat 1 87 0 335 269 128 32 chr5 31079988 31080144 -172005388 - MIR SINE MIR -61 201 31 2082 153 15 26 chr5 31080237 31081048 -172004484 - L1PA16 LINE L1 -3 6163 5295 2618 211 10 50 chr5 31081051 31081611 -172003921 - L1PA16 LINE L1 -1070 5076 4550 2413 69 0 7 chr5 31081611 31081915 -172003617 - AluY SINE Alu -9 302 1 2618 211 10 50 chr5 31081915 31082081 -172003451 - L1PA16 LINE L1 -1596 4550 4379 710 157 0 0 chr5 31082095 31082216 -172003316 - L1PB1 LINE L1 -1 6150 6030 1252 155 4 17 chr5 31082219 31082451 -172003081 + L1 LINE L1 3974 4202 -1944 * 2240 225 41 2 chr5 31082437 31082996 -172002536 - L1 LINE L1 -1764 4382 3802 258 32 0 0 chr5 31083046 31083077 -172002455 + (T)n Simple_repeat Simple_repeat 1 31 0 619 288 36 39 chr5 31083547 31083856 -172001676 + MER97c DNA MER1_type? 265 572 -518 304 237 44 104 chr5 31083928 31084198 -172001334 + MER97c DNA MER1_type? 830 1083 -7 2038 122 16 3 chr5 31084388 31084505 -172001027 + AluSg SINE Alu 1 115 -195 224 75 0 25 chr5 31084505 31084545 -172000987 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 2038 122 16 3 chr5 31084545 31084730 -172000802 + AluSg SINE Alu 115 307 -3 1961 203 5 9 chr5 31084838 31085272 -172000260 + L1MA5 LINE L1 5864 6295 -5 2327 57 3 13 chr5 31085817 31086116 -171999416 - AluY SINE Alu -12 299 4 509 158 0 11 chr5 31086364 31086459 -171999073 + AluY SINE Alu 1 94 -224 876 181 69 81 chr5 31086473 31086733 -171998799 - MER44D DNA MER2_type -81 528 2 261 119 0 0 chr5 31086755 31086797 -171998735 + (TA)n Simple_repeat Simple_repeat 2 43 0 476 127 25 13 chr5 31087547 31087626 -171997906 - L1MA5 LINE L1 -439 5861 5782 659 313 72 50 chr5 31087626 31088152 -171997380 + ERVL LTR ERVL 2211 2746 -2739 717 269 5 5 chr5 31088378 31088571 -171996961 + MLT2B1 LTR ERVL 1 193 -327 2123 221 44 27 chr5 31088575 31089099 -171996433 - L1 LINE L1 -3237 2909 2377 3162 177 17 22 chr5 31089138 31089948 -171995584 + L1MA8 LINE L1 5152 5956 -335 777 216 40 0 chr5 31089952 31090151 -171995381 + L1MA8 LINE L1 6082 6288 -3 22 70 0 0 chr5 31091209 31091252 -171994280 + AT_rich Low_complexity Low_complexity 1 43 0 979 221 76 92 chr5 31091595 31091939 -171993593 + MLT1A2 LTR MaLR 1 349 -25 361 0 20 20 chr5 31091939 31091989 -171993543 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1389 30 0 0 chr5 31091989 31092154 -171993378 - L1PA3 LINE L1 -16 6139 5975 979 221 76 92 chr5 31092154 31092188 -171993344 + MLT1A2 LTR MaLR 347 374 0 21 36 0 0 chr5 31092988 31093016 -171992516 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr5 31093042 31093070 -171992462 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr5 31093203 31093239 -171992293 + AT_rich Low_complexity Low_complexity 1 36 0 30 27 0 0 chr5 31094736 31094773 -171990759 + AT_rich Low_complexity Low_complexity 1 37 0 306 0 0 0 chr5 31094842 31094876 -171990656 + (TTTTA)n Simple_repeat Simple_repeat 3 36 0 11365 35 0 1 chr5 31094879 31097011 -171988521 - L1PA4 LINE L1 -8 6147 4017 255 56 28 0 chr5 31097012 31097048 -171988484 + L1PA4 LINE L1 3972 4008 -2138 289 75 38 0 chr5 31097263 31097316 -171988216 + (TG)n Simple_repeat Simple_repeat 2 56 0 204 189 40 27 chr5 31097536 31097610 -171987922 + (TA)n Simple_repeat Simple_repeat 1 75 0 213 154 0 0 chr5 31097613 31097652 -171987880 + (TATAA)n Simple_repeat Simple_repeat 4 42 0 2625 271 48 40 chr5 31097747 31098738 -171986794 + L1MC2 LINE L1 16 1014 -5528 5281 246 52 23 chr5 31098741 31101820 -171983712 + L1MC2 LINE L1 3659 6819 -23 2462 280 90 24 chr5 31101812 31103212 -171982320 + L1M4 LINE L1 3330 4822 -1324 * 362 219 83 10 chr5 31103213 31103309 -171982223 + MLT2B1 LTR ERVL 2 104 -416 2173 283 59 2 chr5 31103722 31104636 -171980896 - L1M4 LINE L1 -3009 3137 2172 317 169 0 145 chr5 31104705 31104829 -171980703 - L1M4 LINE L1 -3261 2885 2780 345 245 59 10 chr5 31104833 31104935 -171980597 + MLT1E LTR MaLR 479 585 -8 2317 202 96 2 chr5 31106412 31106913 -171978619 + MER44D DNA MER2_type 2 604 -1 1430 212 59 52 chr5 31107243 31107668 -171977864 - MSTC LTR MaLR 0 428 1 2172 101 7 0 chr5 31108464 31108762 -171976770 - AluSx SINE Alu -8 304 5 26 30 0 0 chr5 31109513 31109546 -171975986 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr5 31109576 31109612 -171975920 + AT_rich Low_complexity Low_complexity 1 36 0 1627 138 51 0 chr5 31109612 31109865 -171975667 - AluSg SINE Alu -1 309 44 1821 212 52 63 chr5 31109976 31110593 -171974939 + LTR65 LTR ERV1 3 612 -57 410 297 99 24 chr5 31110677 31110970 -171974562 - L2 LINE L2 -61 3252 2938 328 250 0 0 chr5 31111196 31111272 -171974260 - L2 LINE L2 -835 2479 2404 402 352 42 26 chr5 31111315 31111625 -171973907 + L1MEc LINE L1 73 387 -6009 312 191 16 0 chr5 31112197 31112260 -171973272 + MLT1G1 LTR MaLR 516 579 -16 650 250 159 49 chr5 31113019 31113738 -171971794 + L1M4 LINE L1 2657 3454 -2692 665 298 114 41 chr5 31113770 31114315 -171971217 + L1M4 LINE L1 3625 4228 -1918 1565 205 3 0 chr5 31114315 31114603 -171970929 - AluJb SINE Alu -21 291 3 665 298 114 41 chr5 31114603 31114714 -171970818 + L1M4 LINE L1 4228 4329 -1817 201 222 0 22 chr5 31114728 31114773 -171970759 + (TA)n Simple_repeat Simple_repeat 1 44 0 361 275 70 12 chr5 31114986 31115157 -171970375 + L1M4 LINE L1 4413 4593 -1553 286 301 68 28 chr5 31115162 31115338 -171970194 + L1M4 LINE L1 4545 4727 -1419 1341 197 7 7 chr5 31115385 31115669 -171969863 + L1 LINE L1 4537 4820 -1326 7958 189 15 2 chr5 31115669 31118098 -171967434 + L1PA13 LINE L1 3686 6153 -10 237 129 43 29 chr5 31118357 31118427 -171967105 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 293 194 174 0 chr5 31118434 31118532 -171967000 + L1MC4 LINE L1 7914 8028 -14 26 64 0 0 chr5 31118663 31118710 -171966822 + AT_rich Low_complexity Low_complexity 1 47 0 27 62 0 0 chr5 31119630 31119678 -171965854 + AT_rich Low_complexity Low_complexity 1 48 0 357 200 51 126 chr5 31119870 31120045 -171965487 - LTR52 LTR ERVL -4 417 256 10353 249 31 19 chr5 31120080 31124632 -171960900 + L1PA15 LINE L1 2 4817 -1980 254 262 35 43 chr5 31124646 31124787 -171960745 - THE1C LTR MaLR 0 375 236 1377 164 102 31 chr5 31125126 31125450 -171960082 - THE1C LTR MaLR -26 349 3 5259 188 20 9 chr5 31125459 31127000 -171958532 + L1PA15 LINE L1 4830 6390 -426 233 109 22 0 chr5 31127007 31127053 -171958479 + (TA)n Simple_repeat Simple_repeat 2 48 0 313 238 93 75 chr5 31127053 31127267 -171958265 + L1MCa LINE L1 1986 2203 -4223 28 0 0 0 chr5 31127267 31127295 -171958237 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr5 31127323 31127362 -171958170 + (CA)n Simple_repeat Simple_repeat 2 40 0 2077 155 0 29 chr5 31127362 31127743 -171957789 + L1PA15 LINE L1 6445 6814 -2 682 265 60 17 chr5 31127751 31127985 -171957547 - LTR52 LTR ERVL -177 244 1 183 204 0 0 chr5 31128669 31128713 -171956819 + (TA)n Simple_repeat Simple_repeat 2 45 0 25 0 0 0 chr5 31128741 31128766 -171956766 + AT_rich Low_complexity Low_complexity 1 25 0 234 113 48 16 chr5 31128866 31128966 -171956566 + (TA)n Simple_repeat Simple_repeat 1 103 0 507 309 164 4 chr5 31129580 31129849 -171955683 + MLT2E LTR ERVL 188 499 -129 273 296 27 9 chr5 31130144 31130260 -171955272 + L1MEc LINE L1 1532 1673 -903 455 280 62 15 chr5 31130537 31130784 -171954748 - L1ME1 LINE L1 -237 5927 5679 321 303 16 9 chr5 31130982 31131122 -171954410 - L1ME1 LINE L1 -704 5474 5334 637 271 29 45 chr5 31131126 31131370 -171954162 + Charlie1 DNA MER1_type 1764 2003 -758 2913 40 0 0 chr5 31132130 31132479 -171953053 - L1PA3 LINE L1 -186 5969 5620 1377 48 0 0 chr5 31132479 31132645 -171952887 + L1PA3 LINE L1 5988 6155 0 24 77 0 0 chr5 31132908 31132960 -171952572 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr5 31133120 31133151 -171952381 + AT_rich Low_complexity Low_complexity 1 31 0 825 199 70 0 chr5 31133160 31133346 -171952186 - L1MA5A LINE L1 -101 6196 5998 692 236 6 36 chr5 31133373 31133538 -171951994 + FRAM SINE Alu 1 160 -6 27 0 0 0 chr5 31133557 31133584 -171951948 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr5 31133652 31133679 -171951853 + AT_rich Low_complexity Low_complexity 1 27 0 235 323 21 85 chr5 31134663 31134852 -171950680 - MIR SINE MIR -71 191 15 21 71 0 0 chr5 31135400 31135442 -171950090 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr5 31135712 31135742 -171949790 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr5 31135785 31135812 -171949720 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr5 31135992 31136021 -171949511 + AT_rich Low_complexity Low_complexity 1 29 0 450 178 0 0 chr5 31136148 31136238 -171949294 + (TG)n Simple_repeat Simple_repeat 1 90 0 1666 196 18 67 chr5 31136280 31136725 -171948807 + L1MB3 LINE L1 5273 5695 -473 262 200 0 67 chr5 31136735 31136810 -171948722 + L1MB3 LINE L1 5964 6033 -150 1996 194 60 21 chr5 31136843 31137308 -171948224 + L1MB3 LINE L1 5698 6180 -3 5906 86 9 4 chr5 31137739 31138553 -171946979 - L1PA7 LINE L1 -4 6150 5333 * 7275 95 14 20 chr5 31138548 31139666 -171945866 + L1PA7 LINE L1 4228 5339 -807 36 23 0 0 chr5 31140196 31140239 -171945293 + AT_rich Low_complexity Low_complexity 1 43 0 1828 149 38 0 chr5 31140293 31140582 -171944950 - AluSq SINE Alu -13 300 1 697 175 8 8 chr5 31140681 31140801 -171944731 + AluSg/x SINE Alu 129 248 -64 29 28 0 0 chr5 31140882 31140918 -171944614 + AT_rich Low_complexity Low_complexity 1 36 0 241 196 36 0 chr5 31140968 31141024 -171944508 + GA-rich Low_complexity Low_complexity 2 59 0 27 49 0 0 chr5 31141049 31141090 -171944442 + AT_rich Low_complexity Low_complexity 1 41 0 301 292 146 42 chr5 31141161 31141798 -171943734 + L1M4 LINE L1 4144 4846 -1300 261 0 0 0 chr5 31141900 31141929 -171943603 + (CA)n Simple_repeat Simple_repeat 2 30 0 24 67 0 0 chr5 31141955 31142000 -171943532 + AT_rich Low_complexity Low_complexity 1 45 0 227 161 0 16 chr5 31142440 31142502 -171943030 + (TA)n Simple_repeat Simple_repeat 2 62 0 307 194 65 0 chr5 31142503 31142611 -171942921 + (TAGA)n Simple_repeat Simple_repeat 2 116 0 2164 195 40 18 chr5 31142618 31143116 -171942416 - LTR22 LTR ERVK 0 509 1 52 41 0 0 chr5 31145556 31145629 -171939903 + AT_rich Low_complexity Low_complexity 1 73 0 1375 234 18 37 chr5 31146243 31146624 -171938908 + MLT1A2 LTR MaLR 1 374 0 415 27 68 0 chr5 31146754 31146827 -171938705 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 870 258 47 16 chr5 31147244 31147558 -171937974 + MER74C LTR ERVL 13 419 -139 8781 222 20 8 chr5 31148085 31150391 -171935141 - L1PA16 LINE L1 -727 5439 3112 3551 174 39 4 chr5 31150396 31151092 -171934440 + L1PA16 LINE L1 5438 6157 -9 40 49 0 0 chr5 31151498 31151559 -171933973 + AT_rich Low_complexity Low_complexity 1 61 0 21 89 0 0 chr5 31151614 31151670 -171933862 + AT_rich Low_complexity Low_complexity 1 56 0 2392 48 0 7 chr5 31151989 31152284 -171933248 + AluY SINE Alu 1 293 -18 21 0 0 0 chr5 31152780 31152801 -171932731 + AT_rich Low_complexity Low_complexity 1 21 0 241 337 116 39 chr5 31152876 31153134 -171932398 - L2 LINE L2 -851 2463 2186 2025 107 0 38 chr5 31153363 31153681 -171931851 - AluSg SINE Alu -2 308 3 284 0 28 0 chr5 31153681 31153717 -171931815 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 296 111 37 0 chr5 31153800 31153854 -171931678 - L1MD3 LINE L1 -10 7985 7930 342 45 0 0 chr5 31153899 31153943 -171931589 + (TG)n Simple_repeat Simple_repeat 2 45 0 210 339 48 40 chr5 31155901 31156025 -171929507 + MIR SINE MIR 34 158 -104 1927 138 0 28 chr5 31156960 31157279 -171928253 + AluSq SINE Alu 1 310 -3 480 279 182 34 chr5 31157470 31157821 -171927711 - HAL1 LINE L1 -373 2134 1732 372 175 0 0 chr5 31157872 31157929 -171927603 - AluJ/FLAM SINE Alu -245 57 1 867 206 6 0 chr5 31158216 31158376 -171927156 + MSTD LTR MaLR 1 161 -235 283 211 0 28 chr5 31158478 31158549 -171926983 + MSTD LTR MaLR 325 393 -3 2387 209 76 52 chr5 31158652 31159428 -171926104 - L1MCa LINE L1 -4493 2071 1176 1484 254 14 6 chr5 31159428 31159790 -171925742 - MLT1A1 LTR MaLR 0 365 1 2387 209 76 52 chr5 31159790 31160007 -171925525 - L1MCa LINE L1 -5388 1176 966 180 0 0 0 chr5 31160012 31160032 -171925500 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 631 202 0 0 chr5 31160039 31160148 -171925384 - AluJb SINE Alu -182 130 22 2571 246 44 71 chr5 31160148 31161069 -171924463 - L1MCa LINE L1 -5165 894 3 2118 126 3 0 chr5 31161270 31161572 -171923960 - AluSp SINE Alu -10 303 1 1033 271 97 30 chr5 31161805 31162267 -171923265 - MLT1D LTR MaLR 0 505 13 294 392 59 5 chr5 31164589 31164811 -171920721 - MIR SINE MIR -5 257 24 225 315 75 55 chr5 31219168 31219368 -171866164 + L1MEd LINE L1 311 514 -5605 455 315 70 73 chr5 31219431 31219872 -171865660 + L1MEd LINE L1 569 1008 -5111 292 320 48 81 chr5 31220954 31221226 -171864306 + ERVL LTR ERVL 2025 2287 -3367 201 212 0 61 chr5 31221373 31221472 -171864060 + (CACTT)n Simple_repeat Simple_repeat 5 97 0 228 213 37 37 chr5 31221546 31221682 -171863850 + (TTTCG)n Simple_repeat Simple_repeat 4 139 0 857 113 0 7 chr5 31221722 31221864 -171863668 + (TTTC)n Simple_repeat Simple_repeat 3 143 0 1828 164 0 0 chr5 31221869 31222144 -171863388 - AluSx SINE Alu -37 275 1 453 373 89 19 chr5 31222668 31223218 -171862314 + ERVL LTR ERVL 2864 3490 -1902 284 397 14 0 chr5 31223255 31223396 -171862136 + ERVL LTR ERVL 3567 3709 -2055 661 354 86 3 chr5 31223743 31224079 -171861453 + ERVL LTR ERVL 4084 4447 -1317 207 0 0 0 chr5 31224323 31224346 -171861186 + (CAA)n Simple_repeat Simple_repeat 2 24 0 234 158 0 70 chr5 31225621 31225678 -171859854 - MLT2D LTR ERVL -4 511 459 292 134 60 0 chr5 31225679 31225746 -171859786 + (CATA)n Simple_repeat Simple_repeat 2 72 0 1387 222 80 5 chr5 31225757 31226109 -171859423 - MLT2D LTR ERVL -40 480 1 1337 37 0 0 chr5 31226131 31226294 -171859238 - L1PA5 LINE L1 -4 6150 5988 31 0 0 0 chr5 31226295 31226326 -171859206 + AT_rich Low_complexity Low_complexity 1 31 0 378 311 69 72 chr5 31226509 31226885 -171858647 + L1ME LINE L1 3580 3954 -2192 328 299 106 15 chr5 31226923 31227098 -171858434 + L1ME LINE L1 5401 5591 -571 472 89 25 0 chr5 31227727 31227806 -171857726 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 341 250 0 17 chr5 31227806 31227926 -171857606 + GA-rich Low_complexity Low_complexity 2 119 0 245 325 12 0 chr5 31228712 31228795 -171856737 + MIR SINE MIR 178 261 -1 518 57 0 66 chr5 31228903 31229009 -171856523 - AluY SINE Alu 0 311 213 23 55 0 18 chr5 31229240 31229276 -171856256 + AT_rich Low_complexity Low_complexity 1 37 -17 2099 102 3 23 chr5 31229276 31229580 -171855952 - AluSq SINE Alu -15 298 1 23 55 0 18 chr5 31229580 31229598 -171855934 + AT_rich Low_complexity Low_complexity 37 54 0 334 291 18 0 chr5 31229956 31230066 -171855466 - L1M4 LINE L1 -1537 4609 4498 1191 247 85 14 chr5 31230198 31230562 -171854970 + MLT1B LTR MaLR 1 390 0 354 195 13 0 chr5 31230640 31230717 -171854815 - L1PA16 LINE L1 0 6166 6089 1017 269 71 68 chr5 31231416 31231665 -171853867 - L1ME3A LINE L1 -5 6165 5918 2063 205 35 55 chr5 31231665 31232230 -171853302 + MLT2B3 LTR ERVL 1 554 0 1017 269 71 68 chr5 31232230 31232652 -171852880 - L1ME3A LINE L1 -252 5918 5492 535 26 105 0 chr5 31232662 31232738 -171852794 - L1PA4 LINE L1 -3 6152 6069 484 65 0 0 chr5 31232738 31232800 -171852732 + L1PA3 LINE L1 6009 6070 -85 23 0 0 0 chr5 31234757 31234780 -171850752 + AT_rich Low_complexity Low_complexity 1 23 0 240 265 54 41 chr5 31234809 31235000 -171850532 - L1M3 LINE L1 -666 5514 5317 544 329 48 27 chr5 31235285 31235577 -171849955 + MLT1G1 LTR MaLR 13 310 -285 281 51 0 0 chr5 31235579 31235618 -171849914 - MADE1 DNA Mariner 0 80 42 1822 144 0 0 chr5 31236199 31236470 -171849062 + AluSg SINE Alu 1 271 -39 228 209 152 9 chr5 31236516 31236621 -171848911 - L1M4 LINE L1 -1717 4429 4310 30 77 0 0 chr5 31236653 31236718 -171848814 + AT_rich Low_complexity Low_complexity 1 65 0 1223 215 61 25 chr5 31236770 31237049 -171848483 + AluJo SINE Alu 1 289 -13 35 24 0 0 chr5 31237258 31237300 -171848232 + AT_rich Low_complexity Low_complexity 1 42 0 206 222 0 0 chr5 31237854 31237890 -171847642 + (CACG)n Simple_repeat Simple_repeat 3 38 0 479 333 11 6 chr5 31238018 31238195 -171847337 - MER5B DNA MER1_type 0 178 1 22 0 0 0 chr5 31238997 31239019 -171846513 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr5 31239142 31239191 -171846341 + AT_rich Low_complexity Low_complexity 1 49 0 2004 249 30 14 chr5 31239917 31240415 -171845117 + LTR53 LTR ERVL 14 519 0 1049 192 0 0 chr5 31240565 31240768 -171844764 + L1PA15 LINE L1 4697 4899 -1247 2067 140 27 30 chr5 31240768 31241133 -171844399 - THE1B LTR MaLR 0 364 1 5839 126 0 2 chr5 31241133 31241967 -171843565 - THE1B-int LTR MaLR 0 1580 749 244 75 25 25 chr5 31242226 31242266 -171843266 - THE1B LTR MaLR -324 40 1 4808 184 19 34 chr5 31242266 31243565 -171841967 + L1PA15 LINE L1 4895 6162 -3 1060 182 35 13 chr5 31244333 31244564 -171840968 - L1M3 LINE L1 -365 5803 5568 657 232 57 0 chr5 31244561 31244738 -171840794 + L1MB1 LINE L1 5865 6051 -117 * 14070 213 31 11 chr5 31244758 31249919 -171835613 + L1PA13 LINE L1 2 5501 -1296 4073 136 3 10 chr5 31249926 31250542 -171834990 - LTR9 LTR ERV1 0 612 1 11638 156 10 37 chr5 31250545 31252629 -171832903 - HUERS-P3 LTR ERV1 -4 8915 6889 6513 149 29 9 chr5 31252623 31253681 -171831851 - HUERS-P3 LTR ERV1 -2264 6655 5577 * 312 345 69 32 chr5 31254027 31254273 -171831259 - L1MEd LINE L1 -5595 524 270 2142 105 0 3 chr5 31254339 31254633 -171830899 + AluSq SINE Alu 1 293 -20 31 0 0 0 chr5 31254633 31254664 -171830868 + AT_rich Low_complexity Low_complexity 1 31 0 414 0 0 0 chr5 31254787 31254833 -171830699 + (TG)n Simple_repeat Simple_repeat 2 47 0 1277 205 78 53 chr5 31254880 31255241 -171830291 - MLT1A2 LTR MaLR 0 374 5 1008 93 0 7 chr5 31255285 31255424 -171830108 + AluSp/q SINE Alu 166 303 -10 27 0 0 0 chr5 31255424 31255451 -171830081 + AT_rich Low_complexity Low_complexity 1 27 0 2800 206 48 13 chr5 31256001 31256687 -171828845 - MER67C LTR ERV1 0 710 1 2329 75 0 10 chr5 31256924 31257229 -171828303 - AluY SINE Alu -9 302 1 609 266 116 10 chr5 31257996 31258203 -171827329 + Charlie1b DNA MER1_type 7 235 -288 735 249 23 0 chr5 31258203 31258420 -171827112 + MER33 DNA MER1_type 1 222 -102 2379 147 25 23 chr5 31258625 31259066 -171826466 - LTR56 LTR ERV1 -3 442 1 5169 181 50 75 chr5 31259123 31260723 -171824809 - LTR49-int LTR ERV1 -1377 3746 2100 1766 149 59 0 chr5 31260723 31261012 -171824520 - AluSg SINE Alu -4 306 1 5169 181 50 75 chr5 31261012 31261398 -171824134 - LTR49-int LTR ERV1 -3023 2100 1706 346 299 9 9 chr5 31261517 31261624 -171823908 - LTR49-int LTR ERV1 -2884 3447 3341 3889 230 36 36 chr5 31261666 31263111 -171822421 - LTR49-int LTR ERV1 -2994 3337 1894 1474 185 34 24 chr5 31263111 31263408 -171822124 - AluJo SINE Alu -11 301 2 3889 230 36 36 chr5 31263408 31263438 -171822094 - LTR49-int LTR ERV1 -4437 1894 1866 2392 88 3 3 chr5 31263438 31263746 -171821786 - AluSx SINE Alu -4 308 1 3889 230 36 36 chr5 31263746 31263856 -171821676 - LTR49-int LTR ERV1 -4465 1866 1673 244 183 21 0 chr5 31263873 31263966 -171821566 + (TA)n Simple_repeat Simple_repeat 1 95 0 667 162 22 31 chr5 31264001 31264191 -171821341 - LTR49-int LTR ERV1 -4670 1661 1001 375 225 14 0 chr5 31264232 31264303 -171821229 - tRNA-Glu-GAG tRNA tRNA -2 73 2 304 274 12 12 chr5 31264344 31264428 -171821104 - LTR49-int LTR ERV1 -5132 1199 1116 345 184 79 0 chr5 31264546 31264622 -171820910 - LTR49-int LTR ERV1 -3670 1201 1120 297 250 25 25 chr5 31264666 31264746 -171820786 - MER57A LTR ERV1 -40 363 284 947 136 142 0 chr5 31264849 31265018 -171820514 + MSTA LTR MaLR 236 428 0 1243 260 81 50 chr5 31265793 31266297 -171819235 + MLT1E LTR MaLR 72 591 -2 32 43 0 0 chr5 31266607 31266653 -171818879 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr5 31266695 31266716 -171818816 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr5 31267038 31267075 -171818457 + AT_rich Low_complexity Low_complexity 1 37 0 1859 177 94 31 chr5 31267480 31267893 -171817639 - Tigger2 DNA MER2_type 0 2718 2280 291 261 0 0 chr5 31267891 31267956 -171817576 - Tigger2 DNA MER2_type -2649 69 5 * 33 25 0 0 chr5 31268615 31268655 -171816877 + AT_rich Low_complexity Low_complexity 1 40 0 212 271 176 41 chr5 31269395 31269565 -171815967 - L2 LINE L2 -836 2478 2286 30 0 0 0 chr5 31269866 31269896 -171815636 + AT_rich Low_complexity Low_complexity 1 30 0 223 303 8 42 chr5 31270006 31270125 -171815407 - L2 LINE L2 -541 2773 2659 1684 141 60 43 chr5 31270271 31270640 -171814892 - THE1C LTR MaLR 0 375 1 432 82 0 0 chr5 31271226 31271287 -171814245 + (CA)n Simple_repeat Simple_repeat 2 62 0 352 321 48 96 chr5 31271429 31271784 -171813748 - MLT1J1 LTR MaLR -44 402 65 185 276 92 11 chr5 31271877 31271964 -171813568 + MIR SINE MIR 124 217 -45 24 32 0 0 chr5 31273109 31273140 -171812392 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr5 31273641 31273668 -171811864 + AT_rich Low_complexity Low_complexity 1 27 0 2152 109 0 10 chr5 31273923 31274227 -171811305 + AluSq SINE Alu 1 301 -12 711 235 207 22 chr5 31274528 31274851 -171810681 - L1ME1 LINE L1 -44 6122 5740 964 92 0 157 chr5 31276060 31276289 -171809243 + 7SK RNA RNA 1 193 0 25 90 0 0 chr5 31276297 31276364 -171809168 + AT_rich Low_complexity Low_complexity 1 67 0 1897 233 61 38 chr5 31276368 31276845 -171808687 - MER70B LTR ERVL -1 577 90 737 229 13 6 chr5 31276841 31276998 -171808534 - MER70B LTR ERVL -416 162 5 * 1532 268 29 29 chr5 31277002 31277514 -171808018 - L1MD2 LINE L1 -34 6325 5814 1022 254 150 31 chr5 31278337 31278691 -171806841 + MSTD LTR MaLR 1 396 0 237 278 40 48 chr5 31278691 31278800 -171806732 + MLT1F1 LTR MaLR 92 199 -343 1203 231 128 14 chr5 31278819 31279170 -171806362 + MLT1F1 LTR MaLR 177 567 0 615 332 22 25 chr5 31279321 31279676 -171805856 + MLT1F1-int LTR MaLR 248 601 -770 482 301 112 39 chr5 31280048 31280334 -171805198 + L2 LINE L2 2537 2843 -471 180 0 0 0 chr5 31280678 31280698 -171804834 + (TAA)n Simple_repeat Simple_repeat 2 21 0 679 270 44 14 chr5 31280830 31281146 -171804386 - MER93b LTR ERV1 -1 372 15 809 130 0 0 chr5 31281304 31281419 -171804113 - AluSq/x SINE Alu -198 115 1 677 117 0 0 chr5 31281427 31281530 -171804002 - AluSp/q SINE Alu -2 311 209 29 78 0 0 chr5 31281549 31281613 -171803919 + AT_rich Low_complexity Low_complexity 1 64 0 912 227 65 47 chr5 31283106 31283489 -171802043 - MLT1B LTR MaLR 0 390 1 1293 293 89 13 chr5 31284523 31285044 -171800488 + MLT1E LTR MaLR 15 591 -2 953 273 13 61 chr5 31285152 31285548 -171799984 + MLT2C1 LTR ERVL 18 394 -3 546 332 42 24 chr5 31285551 31286036 -171799496 + HERVL-C1 LTR ERVL 1 511 -5253 24 67 0 0 chr5 31286157 31286202 -171799330 + AT_rich Low_complexity Low_complexity 1 45 0 15072 184 41 5 chr5 31286454 31289257 -171796275 + L1M1 LINE L1 15 2921 -4644 315 0 0 0 chr5 31289257 31289292 -171796240 + (CAA)n Simple_repeat Simple_repeat 2 36 0 15072 184 41 5 chr5 31289292 31289318 -171796214 + L1M1 LINE L1 2921 2945 -4620 2395 189 104 21 chr5 31289318 31289972 -171795560 - LTR28 LTR ERV1 -3 633 1 3454 186 47 54 chr5 31289972 31290440 -171795092 + L1M1 LINE L1 2877 3347 -4218 1656 169 7 27 chr5 31290440 31290736 -171794796 + AluSx SINE Alu 1 290 -22 3454 186 47 54 chr5 31290736 31291709 -171793823 + L1M1 LINE L1 3347 4316 -3249 416 106 0 0 chr5 31291710 31291776 -171793756 + L1M LINE L1 5265 5330 -975 645 107 18 9 chr5 31291776 31291888 -171793644 + L1MA3 LINE L1 6188 6300 -5 569 299 44 13 chr5 31292539 31292826 -171792706 + L1ME1 LINE L1 4760 5063 -1083 2934 210 30 7 chr5 31292872 31293605 -171791927 + L1PA13 LINE L1 2264 3013 -3133 9727 203 6 3 chr5 31293606 31296548 -171788984 + L1PA13 LINE L1 3230 6152 -11 1366 278 79 27 chr5 31296684 31297513 -171788019 + L1ME1 LINE L1 5209 6078 -88 1498 332 66 16 chr5 31297819 31298606 -171786926 - HERVL LTR ERVL -1128 4526 3701 321 261 134 7 chr5 31298730 31298872 -171786660 + L1MA5 LINE L1 4294 4453 -1693 755 176 152 0 chr5 31299139 31299257 -171786275 + MER3 DNA MER1_type 12 163 -46 233 29 29 0 chr5 31299257 31299291 -171786241 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 755 176 152 0 chr5 31299291 31299337 -171786195 + MER3 DNA MER1_type 163 201 -8 331 306 67 78 chr5 31299591 31299762 -171785770 + MLT1H LTR MaLR 71 240 -309 2260 224 22 4 chr5 31299762 31300226 -171785306 - MER70A LTR ERVL 0 472 1 331 306 67 78 chr5 31300226 31300309 -171785223 + MLT1H LTR MaLR 240 322 -227 511 240 24 0 chr5 31300472 31300597 -171784935 + MLT1H LTR MaLR 420 547 -2 3973 213 42 0 chr5 31300635 31301467 -171784065 - L1 LINE L1 -1980 4166 3300 5051 156 26 64 chr5 31301470 31302695 -171782837 + L1MA5 LINE L1 5119 6299 -1 812 195 12 35 chr5 31303207 31303376 -171782156 + FAM SINE Alu 1 165 -10 252 0 0 0 chr5 31303809 31303837 -171781695 + (CA)n Simple_repeat Simple_repeat 1 28 0 392 284 37 43 chr5 31303841 31304100 -171781432 - MLT1I LTR MaLR -88 321 72 21 0 0 0 chr5 31305151 31305172 -171780360 + AT_rich Low_complexity Low_complexity 1 21 0 188 184 11 58 chr5 31305407 31305494 -171780038 + GA-rich Low_complexity Low_complexity 1 83 0 1105 196 19 169 chr5 31306334 31306660 -171778872 - MLT1C LTR MaLR -30 437 214 2160 118 0 3 chr5 31306660 31306974 -171778558 - AluSq SINE Alu 0 313 1 1105 196 19 169 chr5 31306974 31307161 -171778371 - MLT1C LTR MaLR -253 214 1 2099 132 3 7 chr5 31307335 31307645 -171777887 + AluSq SINE Alu 3 311 -2 23 78 0 0 chr5 31307685 31307736 -171777796 + AT_rich Low_complexity Low_complexity 1 51 0 305 241 46 0 chr5 31308404 31308491 -171777041 + L1MC4 LINE L1 6613 6703 -1339 1457 180 0 73 chr5 31308550 31308867 -171776665 - AluJo SINE Alu -16 296 3 284 355 69 10 chr5 31308868 31309071 -171776461 + L2 LINE L2 2539 2753 -561 250 406 23 33 chr5 31309173 31309387 -171776145 + L2 LINE L2 2852 3063 -209 790 292 13 45 chr5 31310479 31310787 -171774745 - HAL1 LINE L1 -2209 298 1 861 260 15 5 chr5 31310817 31311021 -171774511 - MER58A DNA MER1_type -3 221 16 239 176 0 15 chr5 31311138 31311206 -171774326 + CT-rich Low_complexity Low_complexity 2 68 0 189 94 0 0 chr5 31311206 31311238 -171774294 + (CA)n Simple_repeat Simple_repeat 1 32 0 225 0 0 0 chr5 31312391 31312416 -171773116 + (T)n Simple_repeat Simple_repeat 1 25 0 513 124 47 0 chr5 31313197 31313326 -171772206 + (TA)n Simple_repeat Simple_repeat 1 135 0 1750 156 0 14 chr5 31313455 31313750 -171771782 + AluSx SINE Alu 6 296 -16 1688 144 101 23 chr5 31314016 31314364 -171771168 + THE1C LTR MaLR 1 375 0 22 0 0 0 chr5 31314654 31314676 -171770856 + AT_rich Low_complexity Low_complexity 1 22 0 547 266 14 50 chr5 31314774 31314996 -171770536 - MER20 DNA MER1_type -1 218 5 21 0 0 0 chr5 31315325 31315346 -171770186 + AT_rich Low_complexity Low_complexity 1 21 0 205 340 26 85 chr5 31318042 31318195 -171767337 - MER5B DNA MER1_type -23 155 12 1131 288 78 17 chr5 31319318 31319794 -171765738 - L1ME1 LINE L1 -15 6151 5647 300 348 77 25 chr5 31320565 31320927 -171764605 - L2 LINE L2 -974 2340 1960 257 222 278 11 chr5 31320973 31321063 -171764469 + MER34 LTR ERV1 9 122 -420 * 1362 261 68 14 chr5 31321040 31321465 -171764067 + MER39 LTR ERV1 260 707 0 646 233 39 28 chr5 31321791 31321971 -171763561 + MER5A DNA MER1_type 3 184 -5 24 32 0 0 chr5 31324161 31324192 -171761340 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr5 31324544 31324567 -171760965 + AT_rich Low_complexity Low_complexity 1 23 0 249 267 27 0 chr5 31324647 31324722 -171760810 + (TA)n Simple_repeat Simple_repeat 1 77 0 365 305 28 42 chr5 31325101 31325314 -171760218 + Charlie7 DNA MER1_type 312 521 -2091 * 425 271 0 0 chr5 31325311 31325429 -171760103 + Charlie7 DNA MER1_type 1722 1839 -773 263 298 153 15 chr5 31325457 31325588 -171759944 - LTR16A LTR ERVL 0 450 302 21 0 0 0 chr5 31325775 31325796 -171759736 + AT_rich Low_complexity Low_complexity 1 21 0 1915 155 0 16 chr5 31325836 31326153 -171759379 - AluSx SINE Alu 0 312 1 246 338 52 34 chr5 31326613 31326882 -171758650 + HAL1 LINE L1 45 318 -2189 875 315 52 65 chr5 31326925 31326965 -171758567 + L1MCb LINE L1 16 55 -5990 2104 78 0 0 chr5 31326965 31327234 -171758298 + AluY SINE Alu 43 311 0 875 315 52 65 chr5 31327234 31327745 -171757787 + L1MCb LINE L1 55 560 -5485 2321 265 95 40 chr5 31327832 31328527 -171757005 + L1MCb LINE L1 573 1228 -5336 2026 113 9 50 chr5 31328527 31328847 -171756685 + AluSx SINE Alu 1 307 -5 2321 265 95 40 chr5 31328847 31330722 -171754810 + L1MCb LINE L1 1228 3330 -3234 886 266 166 10 chr5 31330735 31331036 -171754496 - MSTD LTR MaLR -48 348 1 41 0 0 0 chr5 31332149 31332190 -171753342 + AT_rich Low_complexity Low_complexity 1 41 0 8406 65 3 2 chr5 31332431 31333501 -171752031 + MER11C LTR ERVK 1 1071 0 296 315 0 0 chr5 31333650 31333739 -171751793 - L1ME4a LINE L1 -70 6051 5963 827 196 17 17 chr5 31334286 31334459 -171751073 + AluSc SINE Alu 131 303 -6 961 223 109 8 chr5 31334859 31335291 -171750241 + MLT1D LTR MaLR 7 505 0 367 313 71 0 chr5 31335793 31335991 -171749541 - HAL1 LINE L1 -741 1766 1555 323 236 24 149 chr5 31336272 31336568 -171748964 - L1MEd LINE L1 -5050 1069 811 25 0 0 0 chr5 31337187 31337212 -171748320 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr5 31337344 31337366 -171748166 + AT_rich Low_complexity Low_complexity 1 22 0 2335 113 3 6 chr5 31339385 31339730 -171745802 - MER9 LTR ERVK 0 511 168 6378 27 0 0 chr5 31339730 31340475 -171745057 - L1P LINE L1 -1890 4256 3512 7699 20 2 0 chr5 31340480 31341580 -171743952 + L1PA2 LINE L1 5054 6155 0 1353 98 5 0 chr5 31341580 31341768 -171743764 - MER9 LTR ERVK -322 189 1 648 249 88 19 chr5 31342306 31342511 -171743021 - MIR SINE MIR -32 230 12 29 0 0 0 chr5 31343787 31343816 -171741716 + AT_rich Low_complexity Low_complexity 1 29 0 256 237 17 0 chr5 31344285 31344344 -171741188 + MIR SINE MIR 167 226 -36 1354 289 26 18 chr5 31345101 31345648 -171739884 + L1MA10 LINE L1 1563 2113 -4917 1209 128 20 15 chr5 31345651 31345855 -171739677 + THE1C LTR MaLR 171 375 0 890 252 40 29 chr5 31345855 31346183 -171739349 + L1MA10 LINE L1 4300 4633 -2473 * 3117 223 123 16 chr5 31346161 31346235 -171739297 + L1MA10 LINE L1 6180 6245 -1049 204 40 0 0 chr5 31346235 31346260 -171739272 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3117 223 123 16 chr5 31346260 31347148 -171738384 + L1MA10 LINE L1 6245 7239 -55 22 88 0 0 chr5 31347154 31347211 -171738321 + AT_rich Low_complexity Low_complexity 1 57 0 13880 213 31 10 chr5 31347506 31349960 -171735572 + L1PB1 LINE L1 6 2409 -4458 199 70 23 23 chr5 31349960 31350003 -171735529 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 13880 213 31 10 chr5 31350003 31352625 -171732907 + L1PB1 LINE L1 2409 5480 -1387 246 32 0 0 chr5 31352625 31352656 -171732876 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 13880 213 31 10 chr5 31352656 31353597 -171731935 + L1PB1 LINE L1 5480 6401 -466 1733 139 89 13 chr5 31353641 31353957 -171731575 + L1PB1 LINE L1 6528 6867 0 254 381 13 13 chr5 31354215 31354370 -171731162 + MLT1J LTR MaLR 3 157 -354 286 216 45 82 chr5 31354493 31354627 -171730905 + MLT1J LTR MaLR 329 457 -54 1969 137 39 41 chr5 31354757 31355083 -171730449 - L1MA5A LINE L1 -3 6294 5968 2266 88 7 0 chr5 31355083 31355379 -171730153 - AluSp SINE Alu -13 300 3 1969 137 39 41 chr5 31355379 31355467 -171730065 - L1MA5A LINE L1 -329 5968 5881 24 32 0 0 chr5 31356061 31356092 -171729440 + AT_rich Low_complexity Low_complexity 1 31 0 29 28 0 0 chr5 31356770 31356806 -171728726 + AT_rich Low_complexity Low_complexity 1 36 0 1530 198 21 43 chr5 31357141 31357514 -171728018 + MLT1A1 LTR MaLR 1 365 0 193 320 13 13 chr5 31357811 31357886 -171727646 + L2 LINE L2 3223 3297 -16 4603 221 64 21 chr5 31360443 31361780 -171723752 + L1MA9 LINE L1 3429 4822 -1324 1647 165 58 16 chr5 31361797 31362106 -171723426 + THE1C LTR MaLR 54 375 0 9230 130 40 38 chr5 31362106 31363680 -171721852 + THE1C-int LTR MaLR 1 1577 -3 1852 159 61 19 chr5 31363683 31364042 -171721490 + THE1C LTR MaLR 1 374 -1 3699 208 23 45 chr5 31364042 31365529 -171720003 + L1MA9 LINE L1 4816 6272 -40 22 0 0 0 chr5 31365529 31365551 -171719981 + AT_rich Low_complexity Low_complexity 1 22 0 2992 167 0 34 chr5 31365838 31366365 -171719167 - HSMAR2 DNA Mariner -395 907 399 1478 228 3 10 chr5 31366366 31366664 -171718868 + AluJb SINE Alu 17 312 0 719 104 9 0 chr5 31366672 31366787 -171718745 + (GGAA)n Simple_repeat Simple_repeat 1 116 0 1611 162 94 0 chr5 31366791 31367119 -171718413 - HSMAR2 DNA Mariner -910 392 34 3989 192 108 24 chr5 31368896 31370383 -171715149 + MER52A LTR ERV1 1 1755 0 2107 110 7 16 chr5 31371012 31371322 -171714210 + AluSq SINE Alu 1 307 -6 191 176 27 27 chr5 31371747 31371821 -171713711 + GA-rich Low_complexity Low_complexity 2 75 0 438 231 0 0 chr5 31372038 31372116 -171713416 + AluJ/FLAM SINE Alu 1 78 -234 458 259 181 0 chr5 31373217 31373383 -171712149 + MIR SINE MIR 67 262 0 799 263 86 97 chr5 31374229 31374822 -171710710 + MER49 LTR ERV1 10 733 -110 2030 132 48 28 chr5 31374822 31375177 -171710355 - THE1B LTR MaLR -2 362 1 799 263 86 97 chr5 31375177 31375286 -171710246 + MER49 LTR ERV1 733 842 -1 1118 214 84 72 chr5 31375725 31376224 -171709308 - MLT1D LTR MaLR 0 505 1 23 33 0 0 chr5 31376814 31376844 -171708688 + AT_rich Low_complexity Low_complexity 1 30 0 465 304 75 40 chr5 31376936 31377137 -171708395 - MIR SINE MIR -21 241 34 21 0 0 0 chr5 31377266 31377287 -171708245 + AT_rich Low_complexity Low_complexity 1 21 0 1071 294 65 18 chr5 31377585 31377922 -171707610 - MLT1E1 LTR MaLR -5 649 297 470 223 23 54 chr5 31378009 31378139 -171707393 - MLT1E1 LTR MaLR -528 126 1 1984 165 27 0 chr5 31378646 31378974 -171706558 + MER1B DNA MER1_type 1 337 0 298 248 113 43 chr5 31380315 31380456 -171705076 - MLT1H1 LTR MaLR 0 555 428 1006 257 143 55 chr5 31380631 31381250 -171704282 - L1M4 LINE L1 -1163 4983 4420 2149 109 3 0 chr5 31381250 31381543 -171703989 + AluSx SINE Alu 1 294 -18 1006 257 143 55 chr5 31381543 31381965 -171703567 - L1M4 LINE L1 -1726 4420 3850 267 277 34 14 chr5 31382272 31382420 -171703112 - L1M4 LINE L1 -3170 2976 2826 2623 144 33 7 chr5 31382460 31382911 -171702621 - L1MA3 LINE L1 -416 5889 5427 2328 118 3 26 chr5 31382910 31383290 -171702242 + L1MA3 LINE L1 5890 6260 -45 * 5998 92 10 12 chr5 31383290 31383663 -171701869 + L1PA8A LINE L1 4986 5358 -773 1862 80 108 31 chr5 31383663 31383951 -171701581 + AluY SINE Alu 1 310 -1 5998 92 10 12 chr5 31383951 31384719 -171700813 + L1PA8A LINE L1 5358 6128 -3 1212 194 84 35 chr5 31384742 31385026 -171700506 - AluJo SINE Alu -2 300 3 245 87 0 0 chr5 31385033 31385079 -171700453 + L1MA2 LINE L1 6259 6304 0 385 308 28 9 chr5 31385122 31385336 -171700196 - L1M4 LINE L1 -3332 2814 2597 3057 219 85 8 chr5 31385342 31386164 -171699368 - L1MC3 LINE L1 0 7785 6901 256 158 12 158 chr5 31386266 31386348 -171699184 - L1MC3 LINE L1 -954 6831 6762 946 241 25 59 chr5 31386356 31386676 -171698856 - L1MC3 LINE L1 -1174 6611 6303 * 1168 222 59 9 chr5 31386670 31386990 -171698542 - L1MC2 LINE L1 -350 5928 5593 1165 113 0 6 chr5 31386992 31387169 -171698363 - L1PA13 LINE L1 -3 6160 5985 3443 121 27 5 chr5 31387173 31387822 -171697710 - L1PA13 LINE L1 -356 5812 5151 2551 185 26 0 chr5 31387820 31387879 -171697653 + L1P LINE L1 4638 4694 -1452 * 347 0 0 23 chr5 31387879 31387923 -171697609 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2551 185 26 0 chr5 31387923 31388366 -171697166 + L1P LINE L1 4694 5153 -993 808 249 32 18 chr5 31388363 31388580 -171696952 - L1MC2 LINE L1 -2116 5603 5384 * 861 294 97 32 chr5 31388671 31390275 -171695257 - L1MC2 LINE L1 -3647 2433 720 9214 136 39 5 chr5 31390827 31392253 -171693279 - HUERS-P3 LTR ERV1 -3248 5671 4197 868 146 7 0 chr5 31392246 31392383 -171693149 + HUERS-P3 LTR ERV1 2372 2509 -6410 * 3290 142 20 2 chr5 31392383 31392940 -171692592 + L1PA13 LINE L1 5595 6161 -2 422 147 18 73 chr5 31392942 31393051 -171692481 + L1MB1 LINE L1 6044 6146 -22 363 96 0 0 chr5 31393062 31393114 -171692418 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 30 0 0 0 chr5 31393643 31393673 -171691859 + AT_rich Low_complexity Low_complexity 1 30 0 191 86 0 29 chr5 31393816 31393851 -171691681 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1467 152 6 107 chr5 31394292 31394620 -171690912 - AluSx SINE Alu -7 295 1 1924 160 36 30 chr5 31394750 31395112 -171690420 + THE1B LTR MaLR 1 364 0 40 0 0 0 chr5 31395188 31395228 -171690304 + AT_rich Low_complexity Low_complexity 1 40 0 270 319 43 58 chr5 31396245 31396433 -171689099 + MLT1I LTR MaLR 104 288 -121 1347 230 114 5 chr5 31396496 31396865 -171688667 - L1 LINE L1 -1045 5101 4693 3760 176 16 7 chr5 31396873 31397604 -171687928 - L1MA6 LINE L1 0 6300 5563 22 35 0 0 chr5 31397656 31397685 -171687847 + AT_rich Low_complexity Low_complexity 1 29 0 1618 203 64 11 chr5 31397698 31398338 -171687194 + L1MA10 LINE L1 3256 3917 -3648 746 44 0 0 chr5 31399916 31400007 -171685525 + MER85 DNA T2_type 44 134 -5 676 218 57 0 chr5 31400007 31400200 -171685332 + L1MA10 LINE L1 4628 4831 -2734 4367 204 21 42 chr5 31400237 31401443 -171684089 + L1MA10 LINE L1 6526 7716 -37 1832 158 0 32 chr5 31402179 31402490 -171683042 - AluSx SINE Alu -11 301 1 185 176 54 0 chr5 31402643 31402717 -171682815 + (TA)n Simple_repeat Simple_repeat 2 79 0 24 0 0 0 chr5 31402727 31402751 -171682781 + AT_rich Low_complexity Low_complexity 1 24 0 343 335 30 12 chr5 31402833 31402997 -171682535 + MLT1I LTR MaLR 121 287 -122 230 348 43 12 chr5 31406649 31406810 -171678722 - MIR SINE MIR -46 216 51 276 91 0 0 chr5 31407808 31407852 -171677680 + (TG)n Simple_repeat Simple_repeat 2 45 0 266 419 105 19 chr5 31408253 31408578 -171676954 + L2 LINE L2 2916 3268 -4 421 315 40 47 chr5 31409243 31409392 -171676140 - MIR SINE MIR -113 149 2 180 125 0 0 chr5 31410905 31410937 -171674595 + (CA)n Simple_repeat Simple_repeat 1 32 0 197 307 89 10 chr5 31411413 31411514 -171674018 - MIR SINE MIR -122 140 32 393 282 98 17 chr5 31412363 31412537 -171672995 + MIR SINE MIR 73 260 -2 240 59 0 0 chr5 31412940 31412974 -171672558 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 302 315 0 0 chr5 31413475 31413583 -171671949 + T-rich Low_complexity Low_complexity 1 108 0 207 215 19 28 chr5 31413635 31413742 -171671790 + T-rich Low_complexity Low_complexity 4 109 0 249 258 23 17 chr5 31413756 31413861 -171671671 + T-rich Low_complexity Low_complexity 1 105 0 2656 39 0 0 chr5 31413868 31414179 -171671353 + AluYb8 SINE Alu 3 313 -5 845 263 111 12 chr5 31415638 31416058 -171669474 - L1MC/D LINE L1 -740 5619 5161 36 0 0 0 chr5 31416096 31416132 -171669400 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr5 31416413 31416434 -171669098 + AT_rich Low_complexity Low_complexity 1 21 0 205 171 0 0 chr5 31417848 31417889 -171667643 + GA-rich Low_complexity Low_complexity 2 42 0 23 33 0 0 chr5 31418692 31418722 -171666810 + AT_rich Low_complexity Low_complexity 1 30 0 2617 187 104 56 chr5 31418831 31419543 -171665989 - LTR1 LTR ERV1 0 785 40 222 221 29 15 chr5 31419963 31420031 -171665501 + (TAA)n Simple_repeat Simple_repeat 1 69 0 318 359 27 22 chr5 31420075 31420259 -171665273 - MIR SINE MIR -32 230 46 394 294 84 19 chr5 31420578 31420792 -171664740 - LTR16B LTR ERVL -13 451 224 1729 147 0 70 chr5 31420803 31421138 -171664394 + AluSx SINE Alu 1 313 0 265 335 99 38 chr5 31421710 31421922 -171663610 - L2 LINE L2 -778 2536 2312 42 48 0 0 chr5 31422351 31422414 -171663118 + AT_rich Low_complexity Low_complexity 1 63 0 2298 59 3 0 chr5 31424034 31424337 -171661195 - L1PA4 LINE L1 -6 6149 5846 770 260 6 6 chr5 31424369 31424542 -171660990 + MLT1D LTR MaLR 285 457 -48 9003 102 21 3 chr5 31425011 31426442 -171659090 - L1PA7 LINE L1 -2 6152 4682 243 0 0 0 chr5 31426442 31426469 -171659063 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9003 102 21 3 chr5 31426469 31427142 -171658390 - L1PA7 LINE L1 -1472 4682 4022 6448 124 2 0 chr5 31427142 31428141 -171657391 + L1PA7 LINE L1 3024 4024 -2122 21 0 0 0 chr5 31428763 31428784 -171656748 + AT_rich Low_complexity Low_complexity 1 21 0 1860 179 36 22 chr5 31429438 31429795 -171655737 - THE1B LTR MaLR 0 364 3 235 270 40 80 chr5 31430357 31430457 -171655075 - MIR SINE MIR -108 154 59 313 295 67 24 chr5 31431074 31431284 -171654248 + L1MC4 LINE L1 103 321 -6102 227 340 69 14 chr5 31431505 31431793 -171653739 + L1MC4 LINE L1 2495 2798 -4324 322 221 149 39 chr5 31431829 31431983 -171653549 + L1MC4 LINE L1 3177 3347 -3594 956 276 10 3 chr5 31432154 31432447 -171653085 + L1MC4 LINE L1 3312 3606 -3335 319 384 8 8 chr5 31434446 31434691 -171650841 + MER70-int LTR ERVL 4431 4675 -348 1206 187 17 0 chr5 31435258 31435488 -171650044 + L1MC1 LINE L1 6088 6321 -12 290 121 99 0 chr5 31435489 31435580 -171649952 + (TATAA)n Simple_repeat Simple_repeat 1 100 0 192 77 0 0 chr5 31435594 31435620 -171649912 + (TG)n Simple_repeat Simple_repeat 1 26 0 2939 177 8 2 chr5 31435624 31436233 -171649299 - L1MA8 LINE L1 -498 5793 5182 1939 191 54 5 chr5 31436234 31436679 -171648853 + L1MA8 LINE L1 5817 6283 -8 1997 240 99 46 chr5 31436687 31437599 -171647933 + L1MC4 LINE L1 5151 6013 -1273 1633 199 0 26 chr5 31437599 31437905 -171647627 + AluJo SINE Alu 3 300 -12 1997 240 99 46 chr5 31437905 31438073 -171647459 + L1MC4 LINE L1 6013 6171 -1115 2380 215 49 9 chr5 31438073 31438111 -171647421 - MLT2B3 LTR ERVL -2 552 517 990 55 20 0 chr5 31438111 31438257 -171647275 + (TAGA)n Simple_repeat Simple_repeat 4 152 0 2380 215 49 9 chr5 31438257 31438749 -171646783 - MLT2B3 LTR ERVL -37 517 1 1997 240 99 46 chr5 31438749 31438978 -171646554 + L1MC4 LINE L1 6171 6540 -746 910 200 0 54 chr5 31438996 31439201 -171646331 + AluJo SINE Alu 95 288 -24 1500 252 106 98 chr5 31439231 31440323 -171645209 + L1MC4 LINE L1 7006 8299 -491 264 279 115 0 chr5 31440323 31440427 -171645105 + MLT1F1 LTR MaLR 5 120 -447 1500 252 106 98 chr5 31440427 31440923 -171644609 + L1MC4 LINE L1 8299 8789 -1 1045 166 18 14 chr5 31440941 31441164 -171644368 - L1M1 LINE L1 -777 5523 5300 1720 201 24 26 chr5 31441177 31441748 -171643784 + L1M2 LINE L1 4941 5512 -743 302 256 0 61 chr5 31441760 31441842 -171643690 - LTR16B LTR ERVL -292 172 96 401 343 53 46 chr5 31442405 31442839 -171642693 + ERVL LTR ERVL 2127 2563 -3201 388 324 54 10 chr5 31442898 31443102 -171642430 + ERVL LTR ERVL 2633 2845 -2640 1358 355 90 42 chr5 31443182 31443630 -171641902 + ERVL LTR ERVL 2997 3422 -2342 2344 49 0 40 chr5 31443630 31443954 -171641578 - AluY SINE Alu 0 311 1 1358 355 90 42 chr5 31443954 31444825 -171640707 + ERVL LTR ERVL 3422 4380 -1384 1999 119 0 12 chr5 31446205 31446542 -171638990 - L1PA2 LINE L1 -2 6153 5821 439 193 237 0 chr5 31546970 31547105 -171538427 + L1MC3 LINE L1 1792 1958 -4468 1504 249 34 36 chr5 31547144 31547706 -171537826 + L1MC3 LINE L1 3098 3658 -2768 1939 252 66 5 chr5 31547706 31548463 -171537069 + L1MC3 LINE L1 4576 5378 -1048 1586 157 102 0 chr5 31548547 31548860 -171536672 - MER46B DNA MER2_type -16 220 1 534 199 6 50 chr5 31548892 31549053 -171536479 + L1MC3 LINE L1 5432 5585 -841 2619 185 17 106 chr5 31549055 31549323 -171536209 - L1 LINE L1 -773 5373 5083 1955 164 92 3 chr5 31549323 31549713 -171535819 - MSTB LTR MaLR -1 425 1 2619 185 17 106 chr5 31549713 31550197 -171535335 - L1 LINE L1 -1063 5083 4688 * 3986 194 19 0 chr5 31550189 31550945 -171534587 + L1PB4 LINE L1 5379 6148 -8 * 8808 195 49 93 chr5 31550941 31553521 -171532011 + L1MC3 LINE L1 5597 8064 -1 342 303 79 31 chr5 31554104 31554460 -171531072 + L1M4 LINE L1 2154 2526 -3620 198 363 73 26 chr5 31554777 31555011 -171530521 - L2 LINE L2 -1483 1831 1587 454 174 41 33 chr5 31556182 31556303 -171529229 + Tigger6a DNA MER2_type 366 487 -596 820 210 5 16 chr5 31556308 31556494 -171529038 + Tigger6a DNA MER2_type 899 1082 -1 269 235 15 29 chr5 31556815 31556883 -171528649 + MER94 DNA DNA 1 67 -67 23 97 0 0 chr5 31556934 31557006 -171528526 + AT_rich Low_complexity Low_complexity 1 72 0 22 56 0 0 chr5 31557176 31557212 -171528320 + AT_rich Low_complexity Low_complexity 1 36 0 523 256 118 7 chr5 31557247 31557536 -171527996 + MER114 LTR ERV 7 327 -321 475 227 8 30 chr5 31557542 31557674 -171527858 + AluJb SINE Alu 3 131 -181 270 230 177 35 chr5 31559570 31559796 -171525736 + L1ME4a LINE L1 5808 6065 -56 812 277 137 25 chr5 31559937 31560410 -171525122 + MLT1H LTR MaLR 1 526 -23 1848 145 102 3 chr5 31560920 31561252 -171524280 - MER47A DNA MER2_type -1 365 1 22 0 0 0 chr5 31561591 31561613 -171523919 + AT_rich Low_complexity Low_complexity 1 22 0 1077 303 72 35 chr5 31562136 31562563 -171522969 + MLT1H LTR MaLR 3 454 -95 2013 192 6 6 chr5 31562563 31562928 -171522604 - MLT1A1 LTR MaLR 0 365 1 1077 303 72 35 chr5 31562928 31563012 -171522520 + MLT1H LTR MaLR 454 533 -16 445 244 11 68 chr5 31563534 31563710 -171521822 + MER103 DNA DNA 1 166 0 183 269 102 148 chr5 31564039 31564174 -171521358 - MIR SINE MIR -1 261 138 727 215 0 0 chr5 31564174 31564304 -171521228 + FLAM_A SINE Alu 1 130 -3 183 269 102 148 chr5 31564304 31564384 -171521148 - MIR SINE MIR -124 138 56 449 252 29 14 chr5 31564952 31565091 -171520441 - L1MA10 LINE L1 -3 6331 6191 2158 147 44 49 chr5 31565091 31565519 -171520013 - MSTB LTR MaLR 0 426 1 8422 173 47 31 chr5 31565519 31565852 -171519680 - MSTB-int LTR MaLR 0 1651 1325 10409 40 1 1 chr5 31565852 31567894 -171517638 - L1PA4 LINE L1 0 6155 4112 8422 173 47 31 chr5 31567894 31569181 -171516351 - MSTB-int LTR MaLR -326 1325 5 1934 110 0 0 chr5 31569198 31569453 -171516079 - AluY SINE Alu -3 308 54 2441 176 7 16 chr5 31569454 31569879 -171515653 - MSTB LTR MaLR -5 421 1 731 214 35 12 chr5 31569961 31569994 -171515538 - L1ME1 LINE L1 -239 5927 5895 3571 194 66 3 chr5 31569994 31570151 -171515381 - L1MA3 LINE L1 -406 5899 5753 2006 127 96 8 chr5 31570151 31570537 -171514995 - L1MA3 LINE L1 0 6305 5886 3571 194 66 3 chr5 31570537 31571638 -171513894 - L1MA3 LINE L1 -552 5753 4569 329 134 39 79 chr5 31571643 31571710 -171513822 + THE1C LTR MaLR 1 51 -377 4527 111 27 31 chr5 31571710 31572722 -171512810 + MER11A LTR ERVK 1 1265 -1 1510 163 34 37 chr5 31572723 31573049 -171512483 + THE1C LTR MaLR 51 375 0 4381 188 36 8 chr5 31573049 31573975 -171511557 - L1MA3 LINE L1 -1581 4565 3614 307 212 114 0 chr5 31574063 31574182 -171511350 - L1ME LINE L1 -266 5855 5715 3099 42 3 0 chr5 31574330 31574711 -171510821 - L1PA4 LINE L1 0 6155 5774 1833 140 27 71 chr5 31574714 31575079 -171510453 - THE1C LTR MaLR -26 349 1 8973 144 32 41 chr5 31575079 31576673 -171508859 - THE1C-int LTR MaLR 0 1580 1 2007 157 10 63 chr5 31576673 31577069 -171508463 - THE1C LTR MaLR 0 375 1 1401 236 55 18 chr5 31577069 31577184 -171508348 - L1MA3 LINE L1 -2528 3618 3509 2036 158 44 3 chr5 31577184 31577544 -171507988 - THE1C LTR MaLR 0 375 1 9550 132 32 38 chr5 31577544 31579133 -171506399 - THE1C-int LTR MaLR 0 1580 1 2231 150 27 3 chr5 31579133 31579499 -171506033 - THE1C LTR MaLR 0 375 1 1401 236 55 18 chr5 31579499 31579839 -171505693 - L1MA3 LINE L1 -2636 3510 3144 2724 34 0 0 chr5 31579849 31580171 -171505361 - L1PA4 LINE L1 -5 6150 5829 1356 19 0 0 chr5 31580175 31580337 -171505195 + L1P2 LINE L1 5307 5468 -687 970 272 31 4 chr5 31580335 31580596 -171504936 - L1MEc LINE L1 -6089 307 40 * 228 274 14 27 chr5 31580945 31581018 -171504514 + L2 LINE L2 3224 3295 -18 597 117 11 0 chr5 31581310 31581404 -171504128 - L1PA7 LINE L1 -3 6151 6057 606 108 0 0 chr5 31581404 31581490 -171504042 + L1PA7 LINE L1 5978 6066 -88 263 28 28 0 chr5 31581603 31581639 -171503893 + (TG)n Simple_repeat Simple_repeat 1 37 0 198 284 64 37 chr5 31581651 31581760 -171503772 - L2 LINE L2 -461 2853 2742 203 211 0 26 chr5 31582228 31582304 -171503228 + (TATATG)n Simple_repeat Simple_repeat 6 79 0 2061 52 36 62 chr5 31582747 31583054 -171502478 - AluY SINE Alu -12 299 1 21 0 0 0 chr5 31583795 31583816 -171501716 + AT_rich Low_complexity Low_complexity 1 21 0 204 118 29 0 chr5 31584078 31584112 -171501420 + (TGG)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr5 31585170 31585193 -171500339 + AT_rich Low_complexity Low_complexity 1 23 0 2164 115 3 7 chr5 31585826 31586130 -171499402 + AluSc SINE Alu 1 303 -6 284 276 97 52 chr5 31586953 31587087 -171498445 - L1P LINE L1 -1921 4225 4086 726 283 45 0 chr5 31588208 31588385 -171497147 - MER5A DNA MER1_type 0 189 5 274 222 16 0 chr5 31588712 31588775 -171496757 + MER96 DNA MER1_type? 3 66 -109 249 363 102 3 chr5 31591058 31591342 -171494190 + L2 LINE L2 1636 1947 -1367 315 389 116 19 chr5 31591562 31592027 -171493505 + L2 LINE L2 2376 2885 -429 4957 177 48 32 chr5 31592095 31593083 -171492449 - L1MA9 LINE L1 -1 6311 5341 180 0 0 0 chr5 31593083 31593103 -171492429 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4957 177 48 32 chr5 31593103 31593242 -171492290 - L1MA9 LINE L1 -971 5341 5206 1957 164 3 0 chr5 31593242 31593552 -171491980 - AluJb SINE Alu -1 311 1 4957 177 48 32 chr5 31593552 31593655 -171491877 - L1MA9 LINE L1 -1106 5206 5052 37 0 0 0 chr5 31593818 31593855 -171491677 + AT_rich Low_complexity Low_complexity 1 37 0 234 333 205 0 chr5 31593888 31594005 -171491527 + L2 LINE L2 3117 3257 -15 21 36 0 0 chr5 31595415 31595443 -171490089 + AT_rich Low_complexity Low_complexity 1 28 0 1148 118 23 27 chr5 31595445 31595665 -171489867 - L1MA8 LINE L1 -20 6271 6053 2202 131 19 25 chr5 31596021 31596387 -171489145 - THE1B LTR MaLR 0 364 1 11625 93 13 9 chr5 31596387 31597182 -171488350 - THE1B-int LTR MaLR 0 1580 773 1987 204 64 21 chr5 31597182 31597666 -171487866 - LTR22 LTR ERVK -4 505 1 11625 93 13 9 chr5 31597666 31598443 -171487089 - THE1B-int LTR MaLR -807 773 1 2253 113 19 38 chr5 31598443 31598814 -171486718 - THE1B LTR MaLR 0 364 1 788 165 110 18 chr5 31599240 31599404 -171486128 + AluJb SINE Alu 130 308 -4 22 0 0 0 chr5 31600044 31600066 -171485466 + AT_rich Low_complexity Low_complexity 1 22 0 212 200 43 43 chr5 31600614 31600684 -171484848 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 27 29 0 0 chr5 31601350 31601384 -171484148 + AT_rich Low_complexity Low_complexity 1 34 0 280 271 200 53 chr5 31601479 31601649 -171483883 - MIR SINE MIR -8 254 60 183 301 0 55 chr5 31601795 31601868 -171483664 - MIR SINE MIR -116 146 78 497 328 107 12 chr5 31602144 31602397 -171483135 + MLT1K LTR MaLR 147 423 -165 343 99 14 42 chr5 31602588 31602659 -171482873 + (TCCC)n Simple_repeat Simple_repeat 2 70 0 1591 187 29 0 chr5 31602667 31602945 -171482587 - AluJo SINE Alu -26 286 1 1543 74 42 0 chr5 31602961 31603176 -171482356 - L1PA6 LINE L1 0 6154 5931 28 0 0 0 chr5 31603351 31603379 -171482153 + AT_rich Low_complexity Low_complexity 1 28 0 30 59 0 0 chr5 31604018 31604069 -171481463 + AT_rich Low_complexity Low_complexity 1 51 0 228 351 82 34 chr5 31605397 31605750 -171479782 + L2 LINE L2 1817 2186 -1128 295 296 113 0 chr5 31605816 31605931 -171479601 - MIR SINE MIR -18 244 117 202 79 79 0 chr5 31605942 31606005 -171479527 + (TA)n Simple_repeat Simple_repeat 1 68 0 47 0 0 0 chr5 31606048 31606095 -171479437 + AT_rich Low_complexity Low_complexity 1 47 0 732 60 28 39 chr5 31606095 31606277 -171479255 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 2017 173 37 44 chr5 31606789 31607350 -171478182 - MLT2A2 LTR ERVL 0 554 1 2441 116 19 16 chr5 31607500 31607872 -171477660 - THE1C LTR MaLR -2 373 1 1284 256 39 22 chr5 31607980 31608343 -171477189 + MLT1A2 LTR MaLR 1 369 -5 264 267 139 0 chr5 31608662 31608763 -171476769 - MIR SINE MIR -11 251 137 466 305 100 36 chr5 31608915 31609687 -171475845 + L1MEd LINE L1 861 1732 -4578 291 363 16 8 chr5 31609724 31609848 -171475684 - MIR SINE MIR -111 151 27 286 346 33 27 chr5 31609959 31610133 -171475399 + MIR SINE MIR 19 193 -63 1865 187 22 6 chr5 31610180 31610539 -171474993 + MLT1A1 LTR MaLR 1 365 0 393 250 4 123 chr5 31611004 31611264 -171474268 - L2 LINE L2 -1 3312 3084 240 137 0 0 chr5 31611716 31611767 -171473765 - LTR66 LTR ERVL -166 444 394 186 133 0 0 chr5 31611773 31611803 -171473729 + (TA)n Simple_repeat Simple_repeat 2 31 0 1166 259 114 34 chr5 31611866 31612306 -171473226 - MLT1D LTR MaLR 0 505 31 24 0 0 0 chr5 31612796 31612820 -171472712 + AT_rich Low_complexity Low_complexity 1 24 0 1348 198 24 11 chr5 31614835 31615162 -171470370 + MER47B DNA MER2_type 1 379 -39 771 142 24 8 chr5 31615150 31615277 -171470255 + Tigger5 DNA MER2_type 2194 2322 -1 * 378 293 73 7 chr5 31615406 31615556 -171469976 + MLT1I LTR MaLR 100 259 -150 238 239 15 15 chr5 31615998 31616065 -171469467 + CT-rich Low_complexity Low_complexity 2 68 0 3188 28 3 5 chr5 31616179 31616568 -171468964 - L1PA4 LINE L1 0 6155 5768 2074 141 34 3 chr5 31617774 31618101 -171467431 + MER1B DNA MER1_type 1 337 0 646 301 69 0 chr5 31619231 31619447 -171466085 + MIR SINE MIR 1 231 -31 2460 47 0 28 chr5 31621150 31621470 -171464062 + AluY SINE Alu 1 311 0 198 0 0 0 chr5 31621582 31621604 -171463928 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 28 48 0 0 chr5 31622280 31622322 -171463210 + AT_rich Low_complexity Low_complexity 1 42 0 192 349 0 0 chr5 31622763 31622829 -171462703 - L2 LINE L2 -1066 2248 2183 480 270 80 44 chr5 31622855 31623081 -171462451 - MIR SINE MIR -17 245 12 228 100 0 0 chr5 31623790 31623830 -171461702 + (CA)n Simple_repeat Simple_repeat 2 41 0 314 341 49 0 chr5 31624011 31624134 -171461398 + MIR SINE MIR 32 160 -102 25 0 0 0 chr5 31624635 31624660 -171460872 + AT_rich Low_complexity Low_complexity 1 25 0 29 70 0 0 chr5 31625949 31626006 -171459526 + AT_rich Low_complexity Low_complexity 1 57 0 213 121 0 0 chr5 31626528 31626561 -171458971 + (T)n Simple_repeat Simple_repeat 1 33 0 2594 220 109 18 chr5 31626815 31627575 -171457957 - L1ME1 LINE L1 -7 6159 5331 22 0 0 0 chr5 31627597 31627619 -171457913 + AT_rich Low_complexity Low_complexity 1 22 0 2457 232 106 34 chr5 31627869 31628774 -171456758 - L1ME2 LINE L1 -71 6093 5091 2540 51 0 3 chr5 31628774 31629085 -171456447 + AluY SINE Alu 1 310 -1 2457 232 106 34 chr5 31629085 31629269 -171456263 - L1ME2 LINE L1 -1073 5091 4922 200 288 63 36 chr5 31631242 31631353 -171454179 + MER5A DNA MER1_type 1 114 -75 395 346 118 7 chr5 31633318 31633598 -171451934 - LTR33A LTR ERVL 0 523 213 311 244 13 0 chr5 31633856 31633934 -171451598 + MER116 DNA Mariner 2 80 0 290 346 39 15 chr5 31634073 31634203 -171451329 + L2 LINE L2 3180 3312 -1 25 31 0 0 chr5 31634272 31634304 -171451228 + AT_rich Low_complexity Low_complexity 1 32 0 1797 222 35 78 chr5 31634496 31635073 -171450459 - MLT2B3 LTR ERVL 0 554 3 301 71 71 0 chr5 31635823 31635893 -171449639 + (TA)n Simple_repeat Simple_repeat 2 76 0 2212 165 22 15 chr5 31637987 31638392 -171447140 + MER21-int LTR ERV1 3742 4149 -42 284 256 0 13 chr5 31638471 31638549 -171446983 + (TA)n Simple_repeat Simple_repeat 1 77 0 382 250 40 0 chr5 31638557 31638657 -171446875 + MER21B LTR ERV1 245 348 -515 10870 210 28 39 chr5 31638658 31642624 -171442908 + L1MB1 LINE L1 2246 6167 -1 363 260 86 60 chr5 31642653 31642968 -171442564 + L1ME4a LINE L1 5793 6115 -6 27 81 0 0 chr5 31643424 31643486 -171442046 + AT_rich Low_complexity Low_complexity 1 62 0 217 291 23 23 chr5 31644321 31644407 -171441125 - MIR SINE MIR -120 142 57 32 0 0 0 chr5 31644555 31644587 -171440945 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr5 31645204 31645237 -171440295 + AT_rich Low_complexity Low_complexity 1 33 0 24 67 0 0 chr5 31645524 31645569 -171439963 + AT_rich Low_complexity Low_complexity 1 45 0 288 0 0 0 chr5 31645895 31645927 -171439605 + (TG)n Simple_repeat Simple_repeat 1 32 0 295 323 134 12 chr5 31646725 31646979 -171438553 + MARNA DNA Mariner 84 368 -218 192 250 0 0 chr5 31646991 31647035 -171438497 + L2 LINE L2 3269 3312 -1 38 61 0 30 chr5 31647170 31647269 -171438263 + AT_rich Low_complexity Low_complexity 1 96 0 231 146 0 0 chr5 31647560 31647601 -171437931 + (TG)n Simple_repeat Simple_repeat 2 42 0 183 129 0 0 chr5 31647613 31647644 -171437888 + (CA)n Simple_repeat Simple_repeat 2 32 0 28 0 0 0 chr5 31648154 31648182 -171437350 + AT_rich Low_complexity Low_complexity 1 28 0 543 138 46 0 chr5 31648185 31648272 -171437260 + AluSg/x SINE Alu 182 272 -40 201 39 0 0 chr5 31648273 31648299 -171437233 + (TC)n Simple_repeat Simple_repeat 2 27 0 2873 150 38 2 chr5 31648492 31648972 -171436560 + LOR1a LTR ERV1 1 497 0 263 285 100 0 chr5 31649506 31649636 -171435896 + MER103 DNA DNA 22 164 -2 27 62 0 0 chr5 31650526 31650574 -171434958 + AT_rich Low_complexity Low_complexity 1 48 0 302 262 102 97 chr5 31650613 31651055 -171434477 + HAL1 LINE L1 2062 2505 -2 519 100 0 0 chr5 31651310 31651380 -171434152 + LOR1a LTR ERV1 428 497 0 24 77 0 0 chr5 31651527 31651579 -171433953 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr5 31653215 31653236 -171432296 + AT_rich Low_complexity Low_complexity 1 21 0 6569 64 22 6 chr5 31653406 31654461 -171431071 - L1PA7 LINE L1 0 6154 5076 3959 90 11 4 chr5 31654464 31655021 -171430511 + L1PA7 LINE L1 4530 5090 -1056 1665 280 43 16 chr5 31655221 31655918 -171429614 - L1ME1 LINE L1 -216 5968 5254 245 369 26 55 chr5 31655910 31656292 -171429240 + L1MB2 LINE L1 417 787 -5516 * 2628 238 61 51 chr5 31656377 31657327 -171428205 + L1MB2 LINE L1 779 1636 -4729 1892 142 4 0 chr5 31657327 31657602 -171427930 + AluSx SINE Alu 1 276 -36 2628 238 61 51 chr5 31657602 31657819 -171427713 + L1MB2 LINE L1 1636 1849 -4516 252 167 25 133 chr5 31657844 31657964 -171427568 + L1MB2 LINE L1 2001 2107 -4277 * 5387 219 27 29 chr5 31657956 31659430 -171426102 + L1MB2 LINE L1 4035 5510 -897 4745 63 10 0 chr5 31659430 31660046 -171425486 + L1PA8 LINE L1 5542 6163 -9 5387 219 27 29 chr5 31660046 31660353 -171425179 + L1MB2 LINE L1 5510 5816 -591 2311 120 76 25 chr5 31660353 31660760 -171424772 + MSTA LTR MaLR 1 428 0 5387 219 27 29 chr5 31660760 31660805 -171424727 + L1MB2 LINE L1 5816 5860 -547 1935 170 18 12 chr5 31660805 31661140 -171424392 - MER1B DNA MER1_type 0 337 1 5387 219 27 29 chr5 31661140 31661476 -171424056 + L1MB2 LINE L1 5860 6199 -208 1977 130 7 7 chr5 31661476 31661784 -171423748 + AluSx SINE Alu 5 312 0 5387 219 27 29 chr5 31661784 31661983 -171423549 + L1MB2 LINE L1 6199 6397 -10 1045 255 95 19 chr5 31661993 31662468 -171423064 - L1MEc LINE L1 -1046 5169 4659 290 277 11 0 chr5 31662612 31662706 -171422826 - L1MEc LINE L1 -1783 4432 4338 480 324 36 0 chr5 31662845 31663095 -171422437 - L1MEc LINE L1 -2620 3595 3337 491 233 44 61 chr5 31663126 31663306 -171422226 - AluJo SINE Alu -23 289 113 965 266 97 19 chr5 31663311 31663796 -171421736 - L1MEc LINE L1 -2946 3269 2747 2373 124 3 0 chr5 31663799 31664163 -171421369 + L1P LINE L1 4730 5094 -1052 486 120 0 0 chr5 31664188 31664263 -171421269 + L1PA11 LINE L1 6100 6174 0 982 241 14 9 chr5 31664293 31664513 -171421019 - MLT1C LTR MaLR 0 467 247 628 289 86 84 chr5 31664515 31665024 -171420508 + MER34 LTR ERV1 3 512 -30 437 193 96 72 chr5 31665133 31665299 -171420233 - MLT1C LTR MaLR -292 175 6 2045 285 84 38 chr5 31665305 31666468 -171419064 - L1MEc LINE L1 -3479 2736 1627 5830 43 6 1 chr5 31666468 31667190 -171418342 - L1PA4 LINE L1 -3 6152 5428 2045 285 84 38 chr5 31667190 31667463 -171418069 - L1MEc LINE L1 -4588 1627 1368 1846 116 75 36 chr5 31667463 31667824 -171417708 + THE1C LTR MaLR 1 375 0 2045 285 84 38 chr5 31667824 31668598 -171416934 - L1MEc LINE L1 -4847 1368 468 723 298 49 78 chr5 31668767 31669257 -171416275 + L2 LINE L2 1304 1779 -1535 2154 121 13 52 chr5 31669257 31669645 -171415887 + MER4A LTR ERV1 1 373 -291 498 110 0 0 chr5 31669672 31669745 -171415787 + MER4A LTR ERV1 356 428 -236 1259 168 48 0 chr5 31669874 31670083 -171415449 + MER4A LTR ERV1 411 629 -35 2076 321 92 23 chr5 31670097 31671211 -171414321 + L2 LINE L2 1775 2964 -350 802 166 0 14 chr5 31671516 31671655 -171413877 - FLAM_C SINE Alu -6 137 1 25 51 0 0 chr5 31671659 31671698 -171413834 + AT_rich Low_complexity Low_complexity 1 39 0 311 250 54 71 chr5 31673269 31673381 -171412151 + MER5B DNA MER1_type 69 178 0 1999 129 19 26 chr5 31673915 31674226 -171411306 - AluSx SINE Alu -3 309 1 542 178 15 104 chr5 31676919 31677054 -171408478 + AluSq/x SINE Alu 5 127 -185 7068 53 8 0 chr5 31677062 31678164 -171407368 + L1PA6 LINE L1 5057 6164 0 2255 107 48 22 chr5 31678412 31678767 -171406765 + THE1B LTR MaLR 1 364 0 3803 138 19 7 chr5 31679081 31679698 -171405834 - MER41B LTR ERV1 -8 627 3 21 0 0 0 chr5 31679855 31679876 -171405656 + AT_rich Low_complexity Low_complexity 1 21 0 2651 155 69 42 chr5 31682174 31682753 -171402779 - LTR49 LTR ERV1 0 595 1 2387 136 29 15 chr5 31682753 31683165 -171402367 - LTR49-int LTR ERV1 0 6331 5914 2217 142 145 91 chr5 31683172 31683779 -171401753 + MER4A LTR ERV1 1 640 -24 2177 134 31 0 chr5 31683779 31684129 -171401403 + THE1B LTR MaLR 1 361 -3 1673 176 25 6 chr5 31684132 31684455 -171401077 + THE1B-int LTR MaLR 1 329 -1251 413 18 0 18 chr5 31685979 31686034 -171399498 + (TG)n Simple_repeat Simple_repeat 2 55 0 2252 217 20 40 chr5 31686050 31686603 -171398929 - MLT1E2 LTR MaLR -2 624 83 257 317 73 8 chr5 31686523 31686646 -171398886 - MLT2C1 LTR ERVL -223 174 44 * 425 244 0 12 chr5 31688026 31688108 -171397424 + Tigger3(Golem) DNA MER2_type 2 82 -2947 1737 160 20 3 chr5 31688127 31688427 -171397105 + Tigger3(Golem) DNA MER2_type 2725 3029 0 31 0 0 0 chr5 31689240 31689271 -171396261 + AT_rich Low_complexity Low_complexity 1 31 0 205 169 15 31 chr5 31689335 31689400 -171396132 + (TAA)n Simple_repeat Simple_repeat 1 64 0 228 67 0 0 chr5 31689693 31689723 -171395809 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 232 204 124 73 chr5 31689737 31689874 -171395658 - L1MC5 LINE L1 -31 7930 7787 201 307 80 0 chr5 31690363 31690438 -171395094 - L2 LINE L2 -1 3271 3191 185 285 95 51 chr5 31692063 31692200 -171393332 + MIR SINE MIR 120 262 0 312 364 48 11 chr5 31693214 31693401 -171392131 + L1MC4 LINE L1 6615 6808 -1234 300 270 60 10 chr5 31693490 31693590 -171391942 + MIR SINE MIR 106 210 -52 336 175 52 41 chr5 31694386 31694483 -171391049 + MER103 DNA DNA 53 150 -16 245 276 16 0 chr5 31695566 31695635 -171389897 - MIR SINE MIR -68 140 70 239 93 0 23 chr5 31695970 31696013 -171389519 - L1ME3 LINE L1 -2 6160 6119 320 316 23 0 chr5 31696060 31696193 -171389339 - L1MC4 LINE L1 -142 7900 7765 834 75 0 0 chr5 31696513 31696619 -171388913 + AluY SINE Alu 1 106 -205 25 31 0 0 chr5 31697009 31697041 -171388491 + AT_rich Low_complexity Low_complexity 1 32 0 4411 180 22 55 chr5 31697041 31697207 -171388325 - L1MB5 LINE L1 -8 6166 5996 1759 187 16 27 chr5 31697207 31697576 -171387956 - MLT1A1 LTR MaLR 0 365 1 4411 180 22 55 chr5 31697576 31698659 -171386873 - L1MB5 LINE L1 -178 5996 4960 2301 62 7 0 chr5 31699185 31699498 -171386034 + AluY SINE Alu 1 311 0 2392 51 0 29 chr5 31699745 31700061 -171385471 + AluY SINE Alu 1 307 -4 1941 127 29 23 chr5 31701340 31701648 -171383884 - AluSq SINE Alu -3 310 1 366 204 11 34 chr5 31701691 31701779 -171383753 + MER81 DNA DNA 29 114 0 757 296 113 44 chr5 31701781 31702234 -171383298 - L1MC4 LINE L1 -259 7783 7300 1546 170 125 9 chr5 31702241 31702576 -171382956 - THE1C LTR MaLR -1 374 1 5032 128 26 22 chr5 31702576 31703390 -171382142 - THE1C-int LTR MaLR 0 1580 764 300 53 0 0 chr5 31703390 31703428 -171382104 - MSTA LTR MaLR -390 38 1 560 310 41 0 chr5 31703428 31703670 -171381862 - L1MC4 LINE L1 -755 7287 7036 1889 145 0 7 chr5 31703687 31703963 -171381569 - AluSx SINE Alu -9 303 30 786 234 9 50 chr5 31703963 31704176 -171381356 + AluJo SINE Alu 96 299 -13 871 218 154 4 chr5 31704180 31704446 -171381086 - L1MC4 LINE L1 -1278 6764 6459 631 282 29 0 chr5 31707314 31707488 -171378044 - MIR SINE MIR -2 260 82 5076 214 49 16 chr5 31707588 31709079 -171376453 + L1PA15-16 LINE L1 2762 4304 -2545 187 277 102 66 chr5 31709829 31709966 -171375566 + L2 LINE L2 3168 3309 -4 401 148 12 25 chr5 31710448 31710529 -171375003 + MER5B DNA MER1_type 99 178 0 245 201 54 0 chr5 31711232 31711314 -171374218 + L1MC4 LINE L1 7419 7494 -314 198 71 0 0 chr5 31711320 31711348 -171374184 + (CA)n Simple_repeat Simple_repeat 1 28 0 360 240 185 24 chr5 31711361 31711671 -171373861 + L1MC5 LINE L1 7654 8001 -41 197 211 70 0 chr5 31713303 31713360 -171372172 + MIR SINE MIR 104 164 -98 185 339 0 15 chr5 31713486 31713551 -171371981 + MIR SINE MIR 159 222 -40 2303 228 10 15 chr5 31713733 31714254 -171371278 + L1ME1 LINE L1 5600 6117 -49 6336 169 28 7 chr5 31714365 31716206 -171369326 - L1PBa LINE L1 -4440 1764 1 311 361 128 26 chr5 31716448 31716839 -171368693 + L2 LINE L2 2310 2740 -574 700 171 28 130 chr5 31716885 31716930 -171368602 + MLT1A1 LTR MaLR 1 49 -316 2148 131 0 0 chr5 31716930 31717227 -171368305 - AluSx SINE Alu -15 297 1 700 171 28 130 chr5 31717227 31717397 -171368135 + MLT1A1 LTR MaLR 49 194 -171 399 337 67 13 chr5 31717782 31717982 -171367550 - MIR SINE MIR -10 252 40 500 264 0 8 chr5 31718352 31718477 -171367055 - MIR SINE MIR 0 262 139 221 81 0 27 chr5 31718580 31718617 -171366915 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 499 263 20 40 chr5 31718916 31719068 -171366464 + MLT1J LTR MaLR 1 149 -362 347 206 0 0 chr5 31719209 31719282 -171366250 + MLT1J LTR MaLR 416 488 -23 414 385 42 26 chr5 31719292 31719597 -171365935 - L2 LINE L2 -224 3089 2782 32 75 0 0 chr5 31720157 31720224 -171365308 + AT_rich Low_complexity Low_complexity 1 67 0 29 28 0 0 chr5 31720393 31720429 -171365103 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr5 31720446 31720479 -171365053 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr5 31720665 31720686 -171364846 + AT_rich Low_complexity Low_complexity 1 21 0 290 305 23 8 chr5 31720802 31720933 -171364599 - HAL1 LINE L1 -121 2386 2254 22 35 0 0 chr5 31721272 31721301 -171364231 + AT_rich Low_complexity Low_complexity 1 29 0 559 244 126 51 chr5 31721593 31721847 -171363685 - HAL1 LINE L1 -651 1856 1584 23 33 0 0 chr5 31722248 31722278 -171363254 + AT_rich Low_complexity Low_complexity 1 30 0 2379 71 6 10 chr5 31722337 31722648 -171362884 + AluY SINE Alu 1 310 -1 883 115 8 0 chr5 31722877 31723007 -171362525 - L1MA2 LINE L1 0 6304 6174 329 318 86 13 chr5 31723184 31723335 -171362197 - L1ME3 LINE L1 -216 5946 5785 31610 30 4 2 chr5 31774207 31778877 -171306655 + L1PA2 LINE L1 1473 6153 -2 3553 208 55 10 chr5 31778882 31779850 -171305682 + L1 LINE L1 4075 5085 -1061 403 294 87 61 chr5 31779957 31780098 -171305434 + L2 LINE L2 2984 3120 -193 2733 182 2 0 chr5 31780098 31780564 -171304968 - MLT1C LTR MaLR 0 467 1 403 294 87 61 chr5 31780564 31780732 -171304800 + L2 LINE L2 3120 3301 -12 1851 168 26 3 chr5 31782554 31782894 -171302638 - MER7A DNA MER2_type 0 346 1 762 231 94 14 chr5 31783038 31783324 -171302208 + MER33 DNA MER1_type 16 324 0 2040 142 7 0 chr5 31783392 31783688 -171301844 + AluSx SINE Alu 1 298 -14 292 286 0 24 chr5 31784547 31784631 -171300901 - MIR3 SINE MIR -48 160 79 1128 263 62 27 chr5 31787431 31787879 -171297653 - LTR16B LTR ERVL 0 464 1 1959 334 68 56 chr5 31787988 31790377 -171295155 - HERVL LTR ERVL -328 5326 2601 3857 171 78 51 chr5 31790669 31791506 -171294026 - MER21A LTR ERV1 -72 859 1 1304 322 72 20 chr5 31791617 31792362 -171293170 - HERV16 LTR ERVL -3634 1362 579 1370 102 0 0 chr5 31792362 31792539 -171292993 + THE1B LTR MaLR 1 177 -187 3279 126 14 8 chr5 31792539 31793041 -171292491 + THE1B-int LTR MaLR 1076 1580 0 2587 98 3 8 chr5 31793041 31793407 -171292125 + THE1B LTR MaLR 1 364 0 318 354 49 25 chr5 31793613 31793898 -171291634 - HERV16 LTR ERVL -4656 340 49 644 330 29 13 chr5 31793944 31794250 -171291282 - LTR16B LTR ERVL 0 464 154 2052 145 0 3 chr5 31794767 31795071 -171290461 - AluSx SINE Alu -9 303 1 226 195 0 0 chr5 31796167 31796208 -171289324 - MLT2B1 LTR ERVL -8 512 472 15235 148 35 21 chr5 31796211 31798876 -171286656 + Tigger2 DNA MER2_type 11 2712 -6 1412 198 173 32 chr5 31798905 31799305 -171286227 - MLT2B1 LTR ERVL -63 457 2 830 231 0 0 chr5 31800331 31800504 -171285028 + FRAM SINE Alu 1 166 -10 2079 142 0 3 chr5 31800545 31800855 -171284677 + AluSp SINE Alu 1 309 -4 291 317 68 12 chr5 31801030 31801176 -171284356 - L2 LINE L2 0 3313 3156 198 0 0 0 chr5 31801176 31801198 -171284334 + (TG)n Simple_repeat Simple_repeat 1 22 0 291 317 68 12 chr5 31801198 31801212 -171284320 - L2 LINE L2 -157 3156 3144 1722 154 40 0 chr5 31801342 31801614 -171283918 + AluJb SINE Alu 1 283 -29 245 98 24 0 chr5 31801617 31801658 -171283874 + (TA)n Simple_repeat Simple_repeat 2 43 0 301 319 28 16 chr5 31801696 31801878 -171283654 + L1ME LINE L1 5476 5659 -462 255 236 28 14 chr5 31801912 31801984 -171283548 - Tigger5 DNA MER2_type 0 2323 2251 * 273 180 0 20 chr5 31801957 31802007 -171283525 - Tigger5 DNA MER2_type -2273 50 2 337 222 52 78 chr5 31802246 31802399 -171283133 + L1ME4a LINE L1 5970 6118 -3 24 32 0 0 chr5 31803013 31803044 -171282488 + AT_rich Low_complexity Low_complexity 1 31 0 271 265 0 51 chr5 31803114 31803212 -171282320 + L1MC4 LINE L1 6616 6708 -1334 631 333 56 5 chr5 31804352 31804568 -171280964 - MIR SINE MIR 0 262 36 640 326 60 5 chr5 31805076 31805291 -171280241 - MIR SINE MIR 0 262 36 431 312 110 21 chr5 31805519 31805756 -171279776 + MIR SINE MIR 5 262 0 30 45 0 0 chr5 31808914 31808958 -171276574 + AT_rich Low_complexity Low_complexity 1 44 0 288 0 0 0 chr5 31809626 31809658 -171275874 + (CA)n Simple_repeat Simple_repeat 2 33 0 31 0 0 0 chr5 31809839 31809870 -171275662 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr5 31810224 31810248 -171275284 + AT_rich Low_complexity Low_complexity 1 24 0 1666 269 86 50 chr5 31810990 31812841 -171272691 - L1ME3A LINE L1 -5 6165 4259 795 288 65 8 chr5 31812867 31813235 -171272297 - L1ME3A LINE L1 -1952 4194 3806 29737 119 19 57 chr5 31813917 31820318 -171265214 + L1PA7 LINE L1 12 6154 0 33 94 0 0 chr5 31821028 31821124 -171264408 + AT_rich Low_complexity Low_complexity 1 96 0 21 36 0 0 chr5 31821365 31821393 -171264139 + AT_rich Low_complexity Low_complexity 1 28 0 1413 194 7 31 chr5 31821620 31821929 -171263603 + AluJo SINE Alu 1 302 0 1055 157 0 0 chr5 31822784 31822956 -171262576 + FRAM SINE Alu 1 167 -9 1529 162 57 17 chr5 31823046 31823342 -171262190 + Tigger7 DNA MER2_type 196 503 -1984 819 133 6 110 chr5 31823364 31823504 -171262028 + Tigger7 DNA MER2_type 2433 2554 -33 2026 127 3 0 chr5 31823504 31823816 -171261716 + AluSx SINE Alu 1 313 0 819 133 6 110 chr5 31823816 31823847 -171261685 + Tigger7 DNA MER2_type 2554 2587 0 182 167 28 0 chr5 31824466 31824502 -171261030 + L2 LINE L2 3269 3305 -8 194 286 0 18 chr5 31824756 31824812 -171260720 - L2 LINE L2 0 3313 3259 256 282 12 0 chr5 31825595 31825680 -171259852 + (TA)n Simple_repeat Simple_repeat 1 86 0 201 325 16 16 chr5 31825780 31825903 -171259629 + (CATA)n Simple_repeat Simple_repeat 2 124 0 208 254 17 0 chr5 31826211 31826270 -171259262 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 287 287 16 31 chr5 31826329 31826458 -171259074 + (TATG)n Simple_repeat Simple_repeat 2 128 0 1539 176 13 89 chr5 31827502 31827893 -171257639 - MLT1A1 LTR MaLR -4 361 1 790 298 133 17 chr5 31827996 31828416 -171257116 - LTR33A LTR ERVL 0 523 55 24 0 0 0 chr5 31828862 31828886 -171256646 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr5 31830525 31830563 -171254969 + AT_rich Low_complexity Low_complexity 1 38 0 2668 200 12 12 chr5 31831694 31832183 -171253349 - MER70B LTR ERVL 0 578 90 767 206 6 24 chr5 31832179 31832344 -171253188 - MER70A LTR ERVL -310 162 1 * 22 56 0 0 chr5 31833418 31833454 -171252078 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr5 31833577 31833599 -171251933 + AT_rich Low_complexity Low_complexity 1 22 0 3127 180 36 30 chr5 31833707 31834500 -171251032 - L1M2 LINE L1 -743 5403 4652 4438 156 19 25 chr5 31834500 31835355 -171250177 + L1MA7 LINE L1 5440 6289 -2 3127 180 36 30 chr5 31835355 31835366 -171250166 - L1M2 LINE L1 -1494 4652 4643 380 375 119 19 chr5 31837043 31837355 -171248177 - L2 LINE L2 -1 3271 2929 275 271 65 61 chr5 31838201 31838422 -171247110 - MLT1L LTR MaLR -216 295 83 1214 155 0 10 chr5 31838548 31838755 -171246777 - L1PB4 LINE L1 0 6156 5952 956 269 52 55 chr5 31839456 31839820 -171245712 + MLT1G1 LTR MaLR 1 363 -232 500 253 88 24 chr5 31840053 31840223 -171245309 - MIR SINE MIR -10 252 72 311 301 16 32 chr5 31840490 31840613 -171244919 - L2 LINE L2 -4 3309 3189 214 418 34 20 chr5 31840614 31840760 -171244772 + L3 LINE CR1 1428 1575 -2 1920 140 3 7 chr5 31843122 31843422 -171242110 - AluSx SINE Alu -13 299 1 201 337 102 39 chr5 31843713 31843968 -171241564 - L2 LINE L2 -35 3237 2967 289 201 4 0 chr5 31844558 31844623 -171240909 - AluJ/monomer SINE Alu -2 300 245 284 296 16 56 chr5 31844774 31844899 -171240633 + MIR SINE MIR 21 140 -122 2347 94 0 0 chr5 31844911 31845218 -171240314 + AluY SINE Alu 1 307 -4 21 36 0 0 chr5 31845615 31845643 -171239889 + AT_rich Low_complexity Low_complexity 1 28 0 228 324 89 36 chr5 31845832 31846057 -171239475 + L2 LINE L2 2659 2895 -419 484 282 13 19 chr5 31846244 31846481 -171239051 - MLT1K LTR MaLR -181 407 148 213 139 0 23 chr5 31846730 31846773 -171238759 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 188 260 0 26 chr5 31847063 31847140 -171238392 + A-rich Low_complexity Low_complexity 1 75 0 186 43 0 0 chr5 31850622 31850645 -171234887 + (CA)n Simple_repeat Simple_repeat 2 24 0 952 164 0 0 chr5 31850661 31850807 -171234725 - FRAM SINE Alu -29 147 2 693 134 67 8 chr5 31850849 31850983 -171234549 - FLAM_C SINE Alu -1 142 1 293 333 0 0 chr5 31851155 31851239 -171234293 + L2 LINE L2 3227 3310 -3 1087 305 92 10 chr5 31851262 31851741 -171233791 + LTR33 LTR ERVL 1 518 -3 42 48 0 0 chr5 31852244 31852307 -171233225 + AT_rich Low_complexity Low_complexity 1 63 0 3225 103 0 5 chr5 31853658 31854104 -171231428 - MLT2A1 LTR ERVL 0 444 1 232 363 30 6 chr5 31854112 31854280 -171231252 - L1M4 LINE L1 -3317 2829 2658 288 224 0 0 chr5 31854285 31854352 -171231180 + (CATA)n Simple_repeat Simple_repeat 2 68 0 21 0 0 0 chr5 31854430 31854451 -171231081 + AT_rich Low_complexity Low_complexity 1 21 0 5467 195 27 9 chr5 31854809 31856813 -171228719 - L1PA16 LINE L1 0 6869 4778 7481 32 5 2 chr5 31856818 31857996 -171227536 - L1PA2 LINE L1 -1 6154 4976 453 267 44 11 chr5 31858147 31858327 -171227205 - L1ME4a LINE L1 0 6121 5936 681 256 40 20 chr5 31859553 31859752 -171225780 + L2 LINE L2 3111 3313 0 247 325 0 51 chr5 31859843 31859960 -171225572 - MIR SINE MIR -62 200 90 331 386 90 5 chr5 31861688 31861877 -171223655 + MIR SINE MIR 14 218 -44 2069 125 0 3 chr5 31862059 31862347 -171223185 - AluSx SINE Alu -9 303 17 25 51 0 0 chr5 31862438 31862477 -171223055 + AT_rich Low_complexity Low_complexity 1 39 0 311 361 71 23 chr5 31862612 31862878 -171222654 - L1ME4a LINE L1 -267 5903 5625 196 345 239 7 chr5 31862884 31863026 -171222506 - MIR3 SINE MIR -8 200 26 217 303 0 30 chr5 31863171 31863237 -171222295 + MIR SINE MIR 23 86 -122 244 287 179 88 chr5 31863259 31863852 -171221680 + L2 LINE L2 2239 2885 -429 31407 39 36 2 chr5 31863953 31867913 -171217619 - L1P LINE L1 -2047 4099 5 12107 190 16 42 chr5 31867910 31871778 -171213754 - L1PA16 LINE L1 -2064 4785 961 * 216 0 0 0 chr5 31871784 31871808 -171213724 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 880 269 93 48 chr5 31872285 31872682 -171212850 - MER90 LTR ERV1 -160 415 1 237 289 125 66 chr5 31873470 31873622 -171211910 + MIR SINE MIR 54 214 -48 229 276 17 0 chr5 31875316 31875374 -171210158 - L2 LINE L2 0 3272 3214 30 45 0 0 chr5 31876333 31876377 -171209155 + AT_rich Low_complexity Low_complexity 1 44 0 217 327 0 40 chr5 31876602 31876703 -171208829 - L2 LINE L2 -333 2939 2843 9217 113 5 9 chr5 31876741 31878811 -171206721 + L1PA10 LINE L1 3900 5961 -207 1349 329 109 46 chr5 31878969 31879224 -171206308 - L2 LINE L2 -687 2627 2390 1456 177 93 35 chr5 31879224 31879569 -171205963 + MLT1A1 LTR MaLR 1 365 0 1349 329 109 46 chr5 31879569 31880538 -171204994 - L2 LINE L2 -924 2390 1325 295 286 184 51 chr5 31880604 31880859 -171204673 - MLT1J LTR MaLR -212 299 11 185 91 0 30 chr5 31880887 31880920 -171204612 + (GA)n Simple_repeat Simple_repeat 1 32 0 1394 253 107 38 chr5 31881015 31881046 -171204486 - L2 LINE L2 -275 3038 3011 1869 173 0 3 chr5 31881046 31881341 -171204191 + AluJb SINE Alu 1 294 -18 1394 253 107 38 chr5 31881341 31881945 -171203587 - L2 LINE L2 -302 3011 2304 663 300 67 0 chr5 31882046 31882256 -171203276 - MER58A DNA MER1_type 0 224 1 475 295 15 50 chr5 31882343 31882604 -171202928 - MER113 DNA MER1_type? -42 479 228 21 0 0 0 chr5 31882777 31882798 -171202734 + AT_rich Low_complexity Low_complexity 1 21 0 394 257 140 42 chr5 31883136 31883326 -171202206 + MER69 DNA AcHobo 2 2524 -2 572 283 52 82 chr5 31883526 31883855 -171201677 + L2 LINE L2 2957 3275 -38 349 203 16 0 chr5 31883887 31883951 -171201581 - L2 LINE L2 -13 3300 3236 304 302 120 106 chr5 31884094 31884369 -171201163 + L3 LINE CR1 1294 1572 -5 246 231 0 0 chr5 31884378 31884430 -171201102 - L2 LINE L2 0 3313 3262 1034 240 39 4 chr5 31885970 31886199 -171199333 - MIR SINE MIR -12 250 14 23 0 0 0 chr5 31887757 31887780 -171197752 + AT_rich Low_complexity Low_complexity 1 23 0 203 257 14 40 chr5 31890428 31890502 -171195030 - MIR SINE MIR -55 207 136 236 337 84 0 chr5 31892426 31892521 -171193011 - L2 LINE L2 -9 3304 3202 296 197 118 0 chr5 31892736 31892812 -171192720 + MER96 DNA MER1_type? 79 163 -12 23 33 0 0 chr5 31892874 31892904 -171192628 + AT_rich Low_complexity Low_complexity 1 30 0 2238 107 0 0 chr5 31893104 31893413 -171192119 + AluSq SINE Alu 4 312 -1 600 234 0 8 chr5 31893498 31893622 -171191910 + MER94 DNA DNA 12 134 0 474 276 133 41 chr5 31895473 31895842 -171189690 + MLT1J1 LTR MaLR 1 403 -43 226 254 63 0 chr5 31896075 31896138 -171189394 + HsTC2 DNA Tc2 24 90 -1808 194 0 39 0 chr5 31896150 31896176 -171189356 + (TG)n Simple_repeat Simple_repeat 1 27 0 225 0 0 0 chr5 31896176 31896201 -171189331 + (TTG)n Simple_repeat Simple_repeat 2 26 0 490 285 23 0 chr5 31898132 31898262 -171187270 - MER117 DNA MER1_type 0 197 65 262 190 121 0 chr5 31898313 31898371 -171187161 - MIR SINE MIR -187 75 11 1861 168 8 55 chr5 31899211 31899593 -171185939 + THE1B LTR MaLR 1 364 0 427 189 142 14 chr5 31901174 31901322 -171184210 + MER20 DNA MER1_type 49 215 -4 381 305 61 115 chr5 31902056 31902551 -171182981 + L2 LINE L2 2174 2641 -673 360 409 18 0 chr5 31902580 31902805 -171182727 + L2 LINE L2 2827 3055 -217 7750 21 0 0 chr5 31903547 31904638 -171180894 + L1PA2 LINE L1 5063 6155 0 1594 284 67 58 chr5 31904740 31904793 -171180739 + L1ME3A LINE L1 4964 5015 -1155 2003 119 14 14 chr5 31904793 31905088 -171180444 + AluSx SINE Alu 1 295 -17 1594 284 67 58 chr5 31905088 31906208 -171179324 + L1ME3A LINE L1 5015 6153 -17 22 0 0 0 chr5 31906213 31906235 -171179297 + AT_rich Low_complexity Low_complexity 1 22 0 346 281 168 58 chr5 31906976 31907250 -171178282 - L2 LINE L2 -15 3298 2995 410 312 115 17 chr5 31907315 31907549 -171177983 - MIR SINE MIR -3 259 3 1674 302 101 30 chr5 31907643 31907998 -171177534 - L2 LINE L2 -475 2839 2511 2439 37 40 0 chr5 31907998 31908297 -171177235 + AluY SINE Alu 1 311 0 1674 302 101 30 chr5 31908297 31908927 -171176605 - L2 LINE L2 -803 2511 1784 183 42 0 0 chr5 31909005 31909029 -171176503 + (A)n Simple_repeat Simple_repeat 1 24 0 261 264 101 54 chr5 31909260 31909389 -171176143 - L2 LINE L2 -6 3307 3173 386 219 10 0 chr5 31910162 31910258 -171175274 + L1ME LINE L1 5721 5817 -347 191 296 62 62 chr5 31913467 31913548 -171171984 - L2 LINE L2 -624 2690 2610 239 305 114 70 chr5 31913587 31913859 -171171673 - L2 LINE L2 -16 3256 2973 604 364 73 36 chr5 31913963 31914636 -171170896 - L2 LINE L2 -575 2739 2042 225 238 0 0 chr5 31916476 31916556 -171168976 + CT-rich Low_complexity Low_complexity 2 81 0 279 189 27 40 chr5 31916742 31916816 -171168716 - MLT1E LTR MaLR -79 514 442 200 301 48 78 chr5 31917119 31917222 -171168310 + MER5A DNA MER1_type 87 186 -3 237 175 18 0 chr5 31917557 31917614 -171167918 + (TA)n Simple_repeat Simple_repeat 2 59 0 474 118 0 0 chr5 31917669 31917762 -171167770 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 1886 217 73 26 chr5 31917882 31918376 -171167156 + LTR40a LTR ERVL 3 519 0 284 303 45 0 chr5 31919374 31919463 -171166069 - L2 LINE L2 -3 3269 3177 1985 124 25 0 chr5 31919574 31919872 -171165660 - AluSx SINE Alu 0 305 1 467 91 26 0 chr5 31919904 31919981 -171165551 + L1PA7 LINE L1 6076 6154 0 847 236 139 78 chr5 31920218 31920497 -171165035 - MLT1A1 LTR MaLR 0 365 60 1447 170 38 60 chr5 31920497 31920844 -171164688 + MER44D DNA MER2_type 1 609 0 847 236 139 78 chr5 31920844 31920908 -171164624 - MLT1A1 LTR MaLR -305 60 1 1012 194 57 134 chr5 31921374 31921792 -171163740 + MLT1B LTR MaLR 1 386 -4 2241 119 3 0 chr5 31922180 31922492 -171163040 - AluSq SINE Alu 0 313 1 247 345 62 0 chr5 31922783 31922896 -171162636 + LTR33A LTR ERVL 71 190 -333 290 258 54 60 chr5 31923631 31923798 -171161734 + MER103 DNA DNA 1 166 0 395 202 150 58 chr5 31924040 31924213 -171161319 + L2 LINE L2 3124 3312 -1 2234 212 75 0 chr5 31925231 31925708 -171159824 - MLT2B2 LTR ERVL -2 513 1 276 91 0 0 chr5 31927129 31927173 -171158359 + (TTGTG)n Simple_repeat Simple_repeat 4 47 0 297 189 32 0 chr5 31927630 31927725 -171157807 + (TA)n Simple_repeat Simple_repeat 2 99 0 2665 107 0 0 chr5 31928582 31928946 -171156586 + THE1B LTR MaLR 1 364 0 368 294 25 0 chr5 31929120 31929239 -171156293 + MIR3 SINE MIR 85 206 -2 196 276 40 40 chr5 31929788 31929864 -171155668 + MIR SINE MIR 79 154 -108 247 269 31 13 chr5 31929933 31930025 -171155507 - MIR SINE MIR -59 149 54 351 350 101 13 chr5 31930918 31931306 -171154226 + L2 LINE L2 1612 2033 -1281 266 348 119 37 chr5 31931364 31931743 -171153789 + L2 LINE L2 2225 2634 -680 1470 204 3 40 chr5 31932273 31932596 -171152936 - AluJo SINE Alu -1 311 1 310 331 31 19 chr5 31932932 31933092 -171152440 + L2 LINE L2 2239 2400 -914 1663 158 135 14 chr5 31933258 31933606 -171151926 - MLT1B LTR MaLR 0 390 1 475 303 56 17 chr5 31933709 31934025 -171151507 + LTR67 LTR ERVL 199 556 -1 368 305 54 0 chr5 31934554 31934689 -171150843 - MIR SINE MIR -67 141 18 218 355 98 33 chr5 31934694 31934877 -171150655 + L2 LINE L2 2887 3081 -191 23 0 0 0 chr5 31935913 31935936 -171149596 + AT_rich Low_complexity Low_complexity 1 23 0 338 267 164 50 chr5 31936734 31936996 -171148536 - L2 LINE L2 -14 3299 3008 2368 100 0 0 chr5 31937322 31937632 -171147900 - AluSx SINE Alu -2 310 1 2110 116 0 29 chr5 31938212 31938523 -171147009 + AluSx SINE Alu 1 302 -10 1903 130 13 10 chr5 31939455 31939756 -171145776 - AluSx SINE Alu -10 302 1 2243 81 0 3 chr5 31940297 31940580 -171144952 - AluSc SINE Alu -27 282 1 411 56 0 0 chr5 31941901 31941955 -171143577 + (ATG)n Simple_repeat Simple_repeat 3 56 0 243 345 79 92 chr5 31943991 31944319 -171141213 - L2 LINE L2 -17 3255 2932 313 371 123 40 chr5 31944777 31945176 -171140356 - L2 LINE L2 0 3272 2841 244 324 105 0 chr5 31945200 31945305 -171140227 - MIR SINE MIR -74 134 19 30 27 0 0 chr5 31946713 31946750 -171138782 + AT_rich Low_complexity Low_complexity 1 37 0 192 231 176 22 chr5 31949648 31949739 -171135793 + MIR SINE MIR 82 186 -76 675 101 10 0 chr5 31950262 31950361 -171135171 - L1PB3 LINE L1 -3 6151 6052 708 137 57 0 chr5 31950363 31950487 -171135045 + L1P LINE L1 5227 5357 -789 637 294 101 22 chr5 31951149 31951377 -171134155 - MIR SINE MIR -2 260 15 1032 188 65 150 chr5 31952037 31952436 -171133096 - MLT1A1 LTR MaLR 0 365 1 352 333 0 0 chr5 31952623 31952719 -171132813 - L2 LINE L2 -9 3263 3168 869 297 133 29 chr5 31953332 31953716 -171131816 - LTR16B LTR ERVL -6 458 35 472 208 28 9 chr5 31954114 31954220 -171131312 + L1 LINE L1 143 250 -5891 * 2056 163 45 17 chr5 31954206 31954646 -171130886 + L1 LINE L1 4148 4603 -1607 4662 76 14 3 chr5 31954646 31955268 -171130264 + L1PA7 LINE L1 5508 6148 -6 2056 163 45 17 chr5 31955268 31955299 -171130233 + L1 LINE L1 4603 4632 -1578 25 75 0 0 chr5 31955480 31955533 -171129999 + AT_rich Low_complexity Low_complexity 1 53 0 1280 234 120 58 chr5 31956063 31956597 -171128935 + MLT1F1 LTR MaLR 1 567 0 2062 125 0 0 chr5 31956964 31957244 -171128288 - AluSg SINE Alu -30 280 1 341 292 98 119 chr5 31957334 31957941 -171127591 - L2 LINE L2 -32 3281 2702 420 146 37 0 chr5 31957941 31958023 -171127509 + L1MB4 LINE L1 6095 6179 -1 341 292 98 119 chr5 31958023 31958295 -171127237 - L2 LINE L2 -611 2702 2426 180 111 0 0 chr5 31958357 31958384 -171127148 + (GAA)n Simple_repeat Simple_repeat 2 28 0 359 278 124 83 chr5 31959336 31959507 -171126025 - MER5A DNA MER1_type 0 189 3 181 359 72 108 chr5 31959635 31959886 -171125646 + L2 LINE L2 3024 3265 -7 2284 146 35 51 chr5 31959959 31960410 -171125122 - Tigger2 DNA MER2_type -2 2716 2273 254 179 0 0 chr5 31960400 31960439 -171125093 - Tigger2 DNA MER2_type -2649 69 31 * 441 114 0 14 chr5 31960439 31960509 -171125023 - AluS SINE Alu -244 69 1 * 847 148 51 6 chr5 31960509 31960669 -171124863 - MLT1A2 LTR MaLR -207 167 1 22 35 0 0 chr5 31961004 31961033 -171124499 + AT_rich Low_complexity Low_complexity 1 29 0 261 159 0 63 chr5 31961141 31961204 -171124328 - L3 LINE CR1 -606 971 913 2091 163 29 32 chr5 31962883 31963441 -171122091 - MLT2A1 LTR ERVL 0 554 1 25 31 0 0 chr5 31963988 31964020 -171121512 + AT_rich Low_complexity Low_complexity 1 32 0 185 357 0 36 chr5 31964133 31964217 -171121315 - L2 LINE L2 -4 3268 3188 636 245 104 60 chr5 31965157 31965406 -171120126 + MIR SINE MIR 3 262 0 22 0 0 0 chr5 31965545 31965567 -171119965 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr5 31967215 31967264 -171118268 + AT_rich Low_complexity Low_complexity 1 49 0 1675 199 58 62 chr5 31967854 31968321 -171117211 + MLT1C LTR MaLR 1 465 -2 2807 141 4 47 chr5 31968345 31968785 -171116747 + L1MA8 LINE L1 4817 5230 -916 1347 207 117 38 chr5 31968785 31969152 -171116380 - MSTD LTR MaLR 0 396 1 2807 141 4 47 chr5 31969152 31969265 -171116267 + L1MA8 LINE L1 5230 5346 -800 3244 159 32 21 chr5 31969269 31969626 -171115906 + L1MA8 LINE L1 5441 5809 -482 189 0 0 0 chr5 31969626 31969647 -171115885 + (TA)n Simple_repeat Simple_repeat 2 22 0 3244 159 32 21 chr5 31969647 31969907 -171115625 + L1MA8 LINE L1 5809 6065 -226 1190 79 6 6 chr5 31970308 31970473 -171115059 + L1PA13 LINE L1 5988 6152 -11 1979 152 30 41 chr5 31972498 31972685 -171112847 - MLT1B LTR MaLR 0 390 203 1268 246 21 34 chr5 31972685 31973063 -171112469 - MLT1A2 LTR MaLR -1 373 1 1979 152 30 41 chr5 31973063 31973269 -171112263 - MLT1B LTR MaLR -187 203 1 322 371 11 17 chr5 31973530 31973705 -171111827 + L1MEd LINE L1 967 1140 -4979 * 540 289 51 67 chr5 31973700 31974056 -171111476 + HAL1 LINE L1 1104 1453 -1054 701 167 10 66 chr5 31974118 31974316 -171111216 - MER53 DNA DNA -1 188 2 318 318 86 15 chr5 31974458 31974656 -171110876 + L2 LINE L2 2939 3150 -163 224 174 0 22 chr5 31974689 31974735 -171110797 + L2 LINE L2 3269 3313 0 202 309 238 18 chr5 31974808 31975203 -171110329 - L2 LINE L2 -818 2496 2015 265 161 145 0 chr5 31975346 31975408 -171110124 + MLT1H LTR MaLR 479 549 0 966 172 6 6 chr5 31975509 31975672 -171109860 + FRAM SINE Alu 1 163 -13 229 342 27 76 chr5 31975779 31976109 -171109423 - L2 LINE L2 -1639 1675 1362 952 148 51 60 chr5 31976136 31976352 -171109180 - MER20 DNA MER1_type -5 214 1 235 236 0 18 chr5 31977671 31977726 -171107806 + GA-rich Low_complexity Low_complexity 1 54 0 446 305 2 0 chr5 31978367 31978493 -171107039 + MIR SINE MIR 16 143 -65 754 274 23 50 chr5 31978735 31978901 -171106631 - MIR SINE MIR 0 262 104 1876 169 0 7 chr5 31978901 31979209 -171106323 + AluJo SINE Alu 5 310 -2 754 274 23 50 chr5 31979209 31979301 -171106231 - MIR SINE MIR -158 104 11 27 0 0 0 chr5 31982154 31982181 -171103351 + AT_rich Low_complexity Low_complexity 1 27 0 1660 169 7 21 chr5 31982691 31982981 -171102551 + AluJb SINE Alu 3 288 -24 902 133 19 6 chr5 31983628 31983786 -171101746 + L1MA2 LINE L1 6144 6303 -1 198 0 0 0 chr5 31985731 31985753 -171099779 + (A)n Simple_repeat Simple_repeat 1 22 0 2089 109 13 13 chr5 31987448 31987752 -171097780 + AluSq SINE Alu 1 304 -9 1601 155 11 0 chr5 31988379 31988643 -171096889 - AluJb SINE Alu -12 300 34 30 0 0 0 chr5 31989058 31989088 -171096444 + AT_rich Low_complexity Low_complexity 1 30 0 292 220 0 0 chr5 31989669 31989719 -171095813 + L2 LINE L2 2996 3045 -227 776 226 0 0 chr5 31990125 31990271 -171095261 - AluJb SINE Alu -19 293 148 437 333 65 65 chr5 31990688 31991487 -171094045 - L2 LINE L2 0 3272 2479 237 242 204 32 chr5 31991897 31992054 -171093478 + MLT1L LTR MaLR 374 557 -58 40416 56 3 37 chr5 31992219 31998590 -171086942 + L1PA5 LINE L1 11 6154 0 2241 59 38 17 chr5 31998632 31998921 -171086611 + AluY SINE Alu 3 297 -14 273 315 26 0 chr5 31999275 31999381 -171086151 + MIR SINE MIR 35 148 -60 2592 100 39 0 chr5 31999383 31999744 -171085788 + THE1C LTR MaLR 1 375 0 1672 194 14 0 chr5 31999816 32000105 -171085427 + AluJb SINE Alu 1 293 -19 242 219 167 10 chr5 32002352 32002448 -171083084 + LTR33A LTR ERVL 396 506 -17 748 304 32 24 chr5 32003344 32003597 -171081935 - MIR SINE MIR 0 262 8 2527 158 24 2 chr5 32003749 32004166 -171081366 + MSTB LTR MaLR 1 426 0 249 57 0 0 chr5 32004441 32004476 -171081056 + (TG)n Simple_repeat Simple_repeat 1 35 0 321 316 84 19 chr5 32005910 32006125 -171079407 + L1ME4a LINE L1 5691 5919 -202 315 246 0 0 chr5 32007187 32007256 -171078276 - MIR SINE MIR -113 149 81 30 27 0 0 chr5 32009030 32009067 -171076465 + AT_rich Low_complexity Low_complexity 1 37 0 945 130 101 18 chr5 32010607 32010776 -171074756 + AluSg/x SINE Alu 128 310 0 2423 161 105 10 chr5 32010893 32011409 -171074123 - LTR49 LTR ERV1 -30 565 1 8222 131 30 11 chr5 32011505 32012893 -171072639 - LTR49-int LTR ERV1 -47 6284 4871 2544 164 45 80 chr5 32012897 32013549 -171071983 - LTR49-int LTR ERV1 -3123 3208 2580 1721 230 58 87 chr5 32013550 32014280 -171071252 - LTR49-int LTR ERV1 -3872 2459 1670 186 43 0 0 chr5 32014295 32014318 -171071214 + (TA)n Simple_repeat Simple_repeat 1 23 0 735 166 156 29 chr5 32014341 32014546 -171070986 - LTR49 LTR ERV1 -331 264 34 1156 161 0 0 chr5 32014546 32014720 -171070812 + AluJb SINE Alu 138 311 -1 282 82 0 20 chr5 32014739 32014788 -171070744 - LTR49 LTR ERV1 -547 48 1 823 288 9 0 chr5 32014923 32015149 -171070383 - MIR SINE MIR -29 233 6 2398 92 0 0 chr5 32015751 32016055 -171069477 - AluSg SINE Alu -4 306 3 463 350 17 6 chr5 32016194 32016374 -171069158 + MIR SINE MIR 13 194 -68 23 54 0 0 chr5 32018495 32018532 -171067000 + AT_rich Low_complexity Low_complexity 1 37 0 275 286 71 43 chr5 32019415 32019555 -171065977 + MIR SINE MIR 119 262 0 200 311 26 100 chr5 32019689 32019879 -171065653 - L2 LINE L2 -1 3312 3137 2119 123 0 19 chr5 32020015 32020324 -171065208 - AluSc SINE Alu -6 303 1 194 272 12 49 chr5 32020611 32020692 -171064840 + L2 LINE L2 2900 2977 -336 2317 94 0 31 chr5 32021014 32021332 -171064200 - AluSg1 SINE Alu -1 308 1 484 158 10 10 chr5 32022880 32022981 -171062551 + (TA)n Simple_repeat Simple_repeat 2 102 0 820 204 17 69 chr5 32023443 32023674 -171061858 - MER20 DNA MER1_type 0 219 1 697 261 46 50 chr5 32024102 32024340 -171061192 + MIR SINE MIR 2 238 -24 21 0 0 0 chr5 32024724 32024745 -171060787 + AT_rich Low_complexity Low_complexity 1 21 0 183 411 9 0 chr5 32025366 32025473 -171060059 - MIR SINE MIR -108 154 47 351 130 14 14 chr5 32026393 32026462 -171059070 + MIR SINE MIR 130 198 -64 285 29 0 0 chr5 32026669 32026703 -171058829 + (A)n Simple_repeat Simple_repeat 1 34 0 223 345 131 10 chr5 32027677 32027883 -171057649 + MIR SINE MIR 32 262 0 180 314 100 29 chr5 32029181 32029321 -171056211 + L2 LINE L2 2734 2883 -431 2590 137 24 12 chr5 32029657 32030080 -171055452 - MSTA LTR MaLR 0 428 1 2247 205 70 37 chr5 32031853 32032371 -171053161 + MER34 LTR ERV1 1 535 -7 28 48 0 0 chr5 32032522 32032564 -171052968 + AT_rich Low_complexity Low_complexity 1 42 0 808 229 124 25 chr5 32032626 32032654 -171052878 - MER5C DNA MER1_type 0 324 300 2471 115 22 0 chr5 32032654 32033010 -171052522 + THE1B LTR MaLR 1 364 0 808 229 124 25 chr5 32033010 32033256 -171052276 - MER5C DNA MER1_type -24 300 23 265 222 14 28 chr5 32033490 32033562 -171051970 + MER69 DNA AcHobo 1 71 -106 360 252 87 0 chr5 32033703 32033830 -171051702 + MER69 DNA AcHobo 2382 2519 -7 1420 148 93 21 chr5 32034030 32034103 -171051429 - MER44D DNA MER2_type -1882 609 543 2391 165 19 14 chr5 32034103 32034533 -171050999 + MSTB1 LTR MaLR 1 432 0 1420 148 93 21 chr5 32034533 32034749 -171050783 - MER44D DNA MER2_type -1948 543 29 391 247 41 34 chr5 32034879 32035025 -171050507 - MER112 DNA MER1_type -78 182 36 4506 192 22 9 chr5 32035643 32038583 -171046949 - L1PB1 LINE L1 -38 6113 2976 3988 64 28 4 chr5 32039672 32040204 -171045328 - L1PA8 LINE L1 -1 6171 5627 25 0 0 0 chr5 32040692 32040717 -171044815 + AT_rich Low_complexity Low_complexity 1 25 0 538 266 47 12 chr5 32041409 32041578 -171043954 - MER5B DNA MER1_type -3 175 1 1681 139 14 185 chr5 32041781 32042343 -171043189 + MER31B LTR ERV1 1 466 0 865 83 0 45 chr5 32043951 32044084 -171041448 + MLT1B LTR MaLR 1 127 -263 426 69 46 11 chr5 32044088 32044175 -171041357 + (TTATA)n Simple_repeat Simple_repeat 3 92 0 2587 90 0 59 chr5 32044187 32044574 -171040958 + THE1B LTR MaLR 1 364 0 1067 141 120 34 chr5 32044579 32044813 -171040719 + MLT1B LTR MaLR 135 388 -2 25 0 0 0 chr5 32045023 32045048 -171040484 + AT_rich Low_complexity Low_complexity 1 25 0 389 287 67 13 chr5 32046012 32046162 -171039370 + MIR SINE MIR 104 261 -1 339 164 0 0 chr5 32046743 32046798 -171038734 - MLT1A2 LTR MaLR 0 374 320 * 609 232 32 26 chr5 32046793 32046948 -171038584 - MLT1A2 LTR MaLR -218 156 1 368 135 0 0 chr5 32047769 32047821 -171037711 - MER45C DNA AcHobo -2 951 900 346 328 80 0 chr5 32047817 32047942 -171037590 - MER45C DNA AcHobo -320 633 499 * 534 153 15 124 chr5 32048119 32048226 -171037306 - MER45C DNA AcHobo -762 191 101 1772 97 68 84 chr5 32048226 32048537 -171036995 + AluSx SINE Alu 1 306 -6 534 153 15 124 chr5 32048537 32048566 -171036966 - MER45C DNA AcHobo -852 101 70 1205 131 6 0 chr5 32048936 32049112 -171036420 - AluSq SINE Alu -8 305 129 368 342 81 35 chr5 32049301 32049611 -171035921 - HAL1 LINE L1 -917 1590 1267 2573 136 28 16 chr5 32050632 32051059 -171034473 + MSTB1 LTR MaLR 1 432 0 1844 124 25 3 chr5 32051937 32052220 -171033312 + AluSc SINE Alu 12 300 -9 212 314 32 85 chr5 32052564 32052724 -171032808 - MIR3 SINE MIR -54 154 2 2349 38 42 7 chr5 32053275 32053562 -171031970 + AluY SINE Alu 1 297 -14 24 32 0 0 chr5 32054640 32054671 -171030861 + AT_rich Low_complexity Low_complexity 1 31 0 438 291 40 27 chr5 32055264 32055412 -171030120 - MIR SINE MIR 0 262 113 295 317 14 82 chr5 32055632 32055840 -171029692 - L2 LINE L2 -523 2791 2598 703 314 108 26 chr5 32055862 32056060 -171029472 + MLT1G1 LTR MaLR 1 181 -414 1637 157 14 14 chr5 32056060 32056346 -171029186 - AluJb SINE Alu -26 286 1 703 314 108 26 chr5 32056346 32056600 -171028932 + MLT1G1 LTR MaLR 181 490 -105 234 271 0 0 chr5 32056601 32056660 -171028872 + MLT1G1 LTR MaLR 445 503 -2 28 71 0 0 chr5 32056805 32056861 -171028671 + AT_rich Low_complexity Low_complexity 1 56 0 1967 104 0 18 chr5 32057385 32057663 -171027869 + AluSg SINE Alu 27 299 -11 1335 215 47 64 chr5 32057980 32058389 -171027143 - MER39 LTR ERV1 0 707 306 2576 65 0 3 chr5 32058851 32059160 -171026372 - AluY SINE Alu -2 309 2 181 179 18 18 chr5 32059585 32059641 -171025891 + (TA)n Simple_repeat Simple_repeat 1 56 0 1731 179 65 60 chr5 32060355 32060423 -171025109 - MLT1C LTR MaLR 0 467 401 4416 110 14 50 chr5 32060423 32061140 -171024392 + LTR8 LTR ERV1 1 691 0 1731 179 65 60 chr5 32061140 32061534 -171023998 - MLT1C LTR MaLR -66 401 3 1511 227 172 10 chr5 32061546 32062039 -171023493 + L1MC3 LINE L1 7213 7785 0 184 176 137 39 chr5 32063199 32063250 -171022282 + L2 LINE L2 3187 3242 -30 10015 122 116 15 chr5 32065438 32067167 -171018365 - L1PBa LINE L1 -4327 2536 634 1161 148 10 0 chr5 32067167 32067363 -171018169 - L1PBa LINE L1 -6663 200 3 242 369 43 14 chr5 32067512 32067653 -171017879 + L2 LINE L2 2602 2746 -568 339 357 54 16 chr5 32068159 32068288 -171017244 - L2 LINE L2 0 3272 3139 1058 226 18 0 chr5 32068306 32068527 -171017005 - MIR SINE MIR -4 258 34 566 209 101 0 chr5 32068700 32068809 -171016723 - MIR SINE MIR -44 218 91 2204 105 55 19 chr5 32068809 32069171 -171016361 + THE1C LTR MaLR 1 375 0 566 209 101 0 chr5 32069171 32069200 -171016332 - MIR SINE MIR -171 91 66 181 328 108 20 chr5 32069395 32069590 -171015942 - L2 LINE L2 -481 2833 2622 323 273 142 50 chr5 32070255 32070515 -171015017 - MLT1J LTR MaLR -12 499 216 2569 50 0 0 chr5 32072642 32072944 -171012588 - AluY SINE Alu -9 302 1 194 200 169 62 chr5 32074099 32074164 -171011368 + L2 LINE L2 3207 3278 -35 362 370 59 25 chr5 32074320 32074674 -171010858 - L2 LINE L2 -411 2903 2538 681 346 67 20 chr5 32074729 32075119 -171010413 - L2 LINE L2 -84 3229 2822 815 339 97 42 chr5 32075140 32075859 -171009673 - L2 LINE L2 -926 2388 1630 22 0 0 0 chr5 32075994 32076016 -171009516 + AT_rich Low_complexity Low_complexity 1 22 0 231 114 0 0 chr5 32076081 32076116 -171009416 + (TA)n Simple_repeat Simple_repeat 1 35 0 193 283 57 0 chr5 32076756 32076809 -171008723 - L2 LINE L2 -1 3312 3257 2236 155 101 8 chr5 32077317 32077503 -171008029 + L1P4 LINE L1 5303 5470 -692 2377 55 3 19 chr5 32077503 32077813 -171007719 + AluY SINE Alu 1 305 -6 2236 155 101 8 chr5 32077813 32077971 -171007561 + L1P4 LINE L1 5470 5612 -550 1980 130 0 36 chr5 32077971 32078272 -171007260 - AluSx SINE Alu -22 290 1 2236 155 101 8 chr5 32078272 32078418 -171007114 + L1P4 LINE L1 5612 5838 -324 288 241 23 11 chr5 32078418 32078505 -171007027 + (TA)n Simple_repeat Simple_repeat 2 89 0 239 217 22 44 chr5 32078530 32078710 -171006822 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 * 245 98 24 0 chr5 32078670 32078711 -171006821 + (CA)n Simple_repeat Simple_repeat 2 43 0 478 161 19 37 chr5 32078763 32078924 -171006608 + (CATA)n Simple_repeat Simple_repeat 2 159 0 1984 153 35 11 chr5 32078928 32079294 -171006238 + L1PB4 LINE L1 5782 6156 0 9635 178 7 12 chr5 32079831 32080119 -171005413 + L1PA7 LINE L1 3228 3516 -2635 9244 92 16 0 chr5 32080119 32082182 -171003350 + L1PA7 LINE L1 4077 6154 0 9635 178 7 12 chr5 32082182 32084472 -171001060 + L1PA7 LINE L1 3516 5791 -360 315 268 21 31 chr5 32084515 32084612 -171000920 - L1MC4 LINE L1 -1333 6709 6614 2327 107 3 22 chr5 32084631 32084996 -171000536 + L1PB1 LINE L1 5777 6134 -17 569 137 81 32 chr5 32085222 32085346 -171000186 - MER53 DNA DNA -58 131 2 26 0 0 0 chr5 32086141 32086167 -170999365 + AT_rich Low_complexity Low_complexity 1 26 0 1975 181 62 2 chr5 32087660 32088096 -170997436 - L1PA16 LINE L1 -9 6157 5661 22 0 0 0 chr5 32088520 32088542 -170996990 + AT_rich Low_complexity Low_complexity 1 22 0 452 308 81 13 chr5 32090225 32090459 -170995073 - L3 LINE CR1 -2 1575 1326 230 269 19 0 chr5 32090466 32090518 -170995014 - L3 LINE CR1 -902 675 623 183 359 160 0 chr5 32090697 32090803 -170994729 - L3 LINE CR1 -1217 360 238 220 348 148 17 chr5 32091128 32091418 -170994114 + L2 LINE L2 1990 2317 -997 299 328 40 8 chr5 32091574 32091699 -170993833 + L2 LINE L2 3180 3308 -5 188 182 23 0 chr5 32096575 32096619 -170988913 + (TA)n Simple_repeat Simple_repeat 2 46 0 1677 172 50 0 chr5 32096732 32097011 -170988521 + AluJb SINE Alu 1 293 -19 2462 132 31 24 chr5 32097271 32097696 -170987836 - MSTA LTR MaLR 0 428 1 1778 146 63 33 chr5 32098902 32099266 -170986266 - THE1C LTR MaLR 0 375 1 198 288 30 15 chr5 32099401 32099467 -170986065 - L3 LINE CR1 -322 1255 1189 1683 231 49 22 chr5 32099487 32099937 -170985595 + LTR40b LTR ERVL 1 462 0 2158 163 72 15 chr5 32100274 32100678 -170984854 + MSTA LTR MaLR 2 428 0 207 100 0 0 chr5 32101199 32101229 -170984303 + (T)n Simple_repeat Simple_repeat 1 30 0 186 43 0 0 chr5 32102358 32102381 -170983151 + (TG)n Simple_repeat Simple_repeat 2 24 0 323 310 35 9 chr5 32102693 32102806 -170982726 + L2 LINE L2 3197 3312 -1 268 327 118 7 chr5 32103817 32103970 -170981562 - L3 LINE CR1 -3 1574 1405 202 303 55 46 chr5 32104051 32104160 -170981372 - MIR SINE MIR -52 210 101 1899 209 105 66 chr5 32107900 32108416 -170977116 - MLT1E LTR MaLR 0 593 58 195 238 0 0 chr5 32109630 32109672 -170975860 - L2 LINE L2 -3 3310 3269 214 330 43 43 chr5 32110715 32110809 -170974723 - L2 LINE L2 -1 3271 3178 227 360 67 13 chr5 32110816 32110966 -170974566 + L2 LINE L2 3154 3311 -2 246 271 29 0 chr5 32113302 32113372 -170972160 - MLT1K LTR MaLR -1 587 516 2110 139 0 0 chr5 32113378 32113681 -170971851 + AluSx SINE Alu 1 303 -9 455 188 0 0 chr5 32215015 32215116 -170870416 - Tigger1 DNA MER2_type -752 1666 1566 4276 153 19 88 chr5 32215116 32216493 -170869039 - pTR5 LTR ERV1 0 2606 1524 593 231 8 0 chr5 32216633 32216754 -170868778 - FLAM_A SINE Alu -11 122 1 866 203 68 4 chr5 32216812 32217049 -170868483 - HAL1 LINE L1 -726 1781 1530 1559 168 62 0 chr5 32217052 32217326 -170868206 - AluJb SINE Alu -21 291 1 382 267 144 7 chr5 32217388 32217534 -170867998 + L2 LINE L2 2481 2646 -668 1299 168 5 0 chr5 32217617 32217826 -170867706 + AluSx SINE Alu 2 211 -101 9394 96 12 13 chr5 32217929 32219386 -170866146 - L1P LINE L1 -763 5383 3928 300 250 13 13 chr5 32219611 32219687 -170865845 - MER81 DNA DNA 0 114 39 31 0 0 0 chr5 32220975 32221006 -170864526 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr5 32221312 32221336 -170864196 + AT_rich Low_complexity Low_complexity 1 24 0 307 280 89 36 chr5 32222090 32222258 -170863274 + MARNA DNA Mariner 229 405 -181 22 0 0 0 chr5 32222536 32222558 -170862974 + AT_rich Low_complexity Low_complexity 1 22 0 2379 158 54 2 chr5 32222639 32223044 -170862488 - MSTB LTR MaLR 0 426 1 229 268 127 0 chr5 32223417 32223488 -170862044 + MIR SINE MIR 19 98 -164 858 198 11 50 chr5 32229192 32229374 -170856158 - FAM SINE Alu 0 175 1 231 188 100 12 chr5 32229382 32229462 -170856070 - L1MC5 LINE L1 -34 7927 7841 1434 196 103 41 chr5 32229475 32229801 -170855731 - L1MC5 LINE L1 -310 7651 7276 813 212 88 5 chr5 32229801 32229994 -170855538 - MER3 DNA MER1_type 0 209 1 1434 196 103 41 chr5 32229994 32230208 -170855324 - L1MC5 LINE L1 -685 7276 7077 352 145 0 105 chr5 32230346 32230422 -170855110 - Tigger5 DNA MER2_type 0 2323 2256 243 250 18 0 chr5 32230434 32230490 -170855042 + Tigger5 DNA MER2_type 2264 2320 -3 * 405 215 0 0 chr5 32230490 32230568 -170854964 - Tigger5 DNA MER2_type -2245 78 1 1835 160 0 11 chr5 32230727 32231014 -170854518 - AluJo SINE Alu -28 284 1 2276 88 10 3 chr5 32231204 32231500 -170854032 + AluSx SINE Alu 8 305 -7 234 228 59 30 chr5 32231524 32231625 -170853907 - L1MC5 LINE L1 -1844 5964 5861 320 250 0 0 chr5 32231627 32231691 -170853841 + AluJ/FLAM SINE Alu 1 64 -238 1079 170 0 0 chr5 32231691 32231856 -170853676 + AluJo/FRAM SINE Alu 130 294 -18 390 21 0 0 chr5 32232115 32232162 -170853370 + (TG)n Simple_repeat Simple_repeat 2 48 0 612 299 51 49 chr5 32232455 32232684 -170852848 - HAL1b LINE L1 -706 642 415 2079 139 0 3 chr5 32232684 32232985 -170852547 + AluJb SINE Alu 1 300 -12 612 299 51 49 chr5 32232985 32233303 -170852229 - HAL1b LINE L1 -933 415 94 2463 73 0 0 chr5 32233665 32233966 -170851566 - AluY SINE Alu -10 301 1 21 0 0 0 chr5 32234678 32234699 -170850833 + AT_rich Low_complexity Low_complexity 1 21 0 224 313 197 50 chr5 32234907 32235117 -170850415 + L3 LINE CR1 1120 1388 -189 1849 151 0 27 chr5 32235117 32235416 -170850116 + AluJb SINE Alu 1 291 -21 224 313 197 50 chr5 32235416 32235505 -170850027 + L3 LINE CR1 1388 1463 -114 221 384 30 0 chr5 32236479 32236578 -170848954 - MIR3 SINE MIR -50 158 57 911 226 28 19 chr5 32236600 32236812 -170848720 - MIR SINE MIR -37 225 12 2332 93 0 0 chr5 32237401 32237701 -170847831 - AluSq SINE Alu -13 300 1 5495 105 14 27 chr5 32237792 32238760 -170846772 - L1PB3 LINE L1 -4 6150 5194 1811 140 59 0 chr5 32238871 32239157 -170846375 - AluJo SINE Alu -7 305 3 2117 141 0 7 chr5 32239471 32239770 -170845762 - AluSx SINE Alu -15 297 1 4401 177 25 16 chr5 32240082 32241099 -170844433 - L1MB8 LINE L1 -1 6177 5144 608 219 0 0 chr5 32241097 32241234 -170844298 - L1MB8 LINE L1 -1461 4685 4549 * 2204 89 94 19 chr5 32241255 32241568 -170843964 - L1PA13 LINE L1 -39 6124 5780 2025 140 0 0 chr5 32241568 32241861 -170843671 - AluSx SINE Alu -19 293 1 2204 89 94 19 chr5 32241861 32241920 -170843612 - L1PA13 LINE L1 -383 5780 5727 276 55 0 73 chr5 32241924 32241979 -170843553 - FAM SINE Alu -1 178 128 3028 228 53 12 chr5 32241979 32242153 -170843379 - L1MB8 LINE L1 -1589 4557 4392 2588 61 0 3 chr5 32242153 32242464 -170843068 - AluY SINE Alu -1 310 1 3028 228 53 12 chr5 32242464 32243192 -170842340 - L1MB8 LINE L1 -1754 4392 3618 271 384 56 0 chr5 32244639 32244764 -170840768 + L2 LINE L2 3141 3272 0 1963 102 80 0 chr5 32245306 32245581 -170839951 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr5 32245675 32245696 -170839836 + AT_rich Low_complexity Low_complexity 1 21 0 193 286 114 0 chr5 32245826 32245896 -170839636 + L3 LINE CR1 1496 1573 -4 1636 164 39 4 chr5 32247204 32247485 -170838047 - AluJo SINE Alu -21 291 1 1178 125 91 159 chr5 32247599 32247983 -170837549 - MER46B DNA MER2_type -3 233 1 2171 207 62 20 chr5 32248902 32249065 -170836467 - MER44D DNA MER2_type -1913 574 419 545 118 11 0 chr5 32249065 32249158 -170836374 + L1PA15 LINE L1 6072 6165 0 2171 207 62 20 chr5 32249158 32249492 -170836040 - MER44D DNA MER2_type -2068 419 1 1589 281 82 48 chr5 32249531 32250399 -170835133 + L2 LINE L2 1841 2737 -577 197 284 28 83 chr5 32250620 32250729 -170834803 - L2 LINE L2 -213 3059 2957 468 0 0 0 chr5 32251827 32251879 -170833653 + (TG)n Simple_repeat Simple_repeat 2 53 0 2255 118 0 0 chr5 32251929 32252226 -170833306 + AluSx SINE Alu 2 298 -14 418 270 13 113 chr5 32253480 32253710 -170831822 + MIR SINE MIR 53 259 -3 2219 79 0 30 chr5 32254766 32255071 -170830461 + AluY SINE Alu 3 298 -13 2316 104 0 0 chr5 32256185 32256483 -170829049 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr5 32257228 32257251 -170828281 + (T)n Simple_repeat Simple_repeat 1 23 0 490 305 6 30 chr5 32257971 32258135 -170827397 + MIR SINE MIR 25 184 -78 646 167 25 8 chr5 32258147 32258267 -170827265 + MER90 LTR ERV1 352 473 -102 239 294 44 0 chr5 32260508 32260576 -170824956 + L2 LINE L2 3201 3271 -1 357 127 16 0 chr5 32260839 32260902 -170824630 - LTR65 LTR ERV1 -6 663 600 567 224 8 0 chr5 32261077 32261211 -170824321 - LTR65 LTR ERV1 -534 135 1 194 314 210 45 chr5 32261421 32261863 -170823669 + L2 LINE L2 2243 2757 -557 235 309 119 0 chr5 32262274 32262358 -170823174 - MIR SINE MIR -121 141 48 303 299 170 26 chr5 32262658 32262852 -170822680 - MIR SINE MIR -21 241 20 24 0 0 0 chr5 32263261 32263285 -170822247 + AT_rich Low_complexity Low_complexity 1 24 0 220 242 0 16 chr5 32264814 32264876 -170820656 + (TA)n Simple_repeat Simple_repeat 1 61 0 21 0 0 0 chr5 32264947 32264968 -170820564 + AT_rich Low_complexity Low_complexity 1 21 0 567 235 129 18 chr5 32265171 32265341 -170820191 + MER5A DNA MER1_type 1 189 0 835 244 10 0 chr5 32266076 32266269 -170819263 - MER58A DNA MER1_type -11 213 19 1622 118 6 156 chr5 32266498 32266863 -170818669 - AluJb SINE Alu -2 310 1 208 277 31 75 chr5 32267535 32267694 -170817838 - L2 LINE L2 -18 3295 3144 720 325 115 21 chr5 32269405 32270015 -170815517 + L2 LINE L2 1955 2621 -693 1566 169 69 4 chr5 32270048 32270308 -170815224 + AluJo SINE Alu 1 277 -35 423 78 0 0 chr5 32270309 32270373 -170815159 + (TC)n Simple_repeat Simple_repeat 2 65 0 248 0 31 0 chr5 32270376 32270408 -170815124 + (CA)n Simple_repeat Simple_repeat 2 34 0 212 356 0 11 chr5 32270701 32270788 -170814744 + L2 LINE L2 2622 2707 -607 599 253 59 0 chr5 32270831 32271017 -170814515 + L2 LINE L2 2057 2253 -1061 255 51 0 0 chr5 32271029 32271068 -170814464 - L1P LINE L1 -854 5300 5262 960 284 123 11 chr5 32271068 32271745 -170813787 + L2 LINE L2 2559 3311 -2 453 285 131 55 chr5 32271843 32272240 -170813292 + L2 LINE L2 2842 3268 -4 21 0 0 0 chr5 32272363 32272384 -170813148 + AT_rich Low_complexity Low_complexity 1 21 0 225 307 148 20 chr5 32273085 32273287 -170812245 - L3b LINE CR1 -87 1496 1269 745 276 39 4 chr5 32273946 32274178 -170811354 - MIR SINE MIR -3 259 20 241 289 44 22 chr5 32274707 32274797 -170810735 - MER5B DNA MER1_type -72 106 15 2094 127 0 7 chr5 32276690 32276982 -170808550 + AluJb SINE Alu 1 290 -22 37 23 0 0 chr5 32277028 32277072 -170808460 + AT_rich Low_complexity Low_complexity 1 44 0 397 237 45 6 chr5 32277187 32277370 -170808162 + L1ME1 LINE L1 5946 6181 -3 1477 178 73 14 chr5 32282107 32282393 -170803139 - AluSx SINE Alu -9 303 1 222 37 0 0 chr5 32282826 32282853 -170802679 + (A)n Simple_repeat Simple_repeat 1 27 0 2263 99 0 25 chr5 32283218 32283532 -170802000 - AluSq SINE Alu -7 306 1 356 299 57 13 chr5 32283645 32283802 -170801730 - L1MC4a LINE L1 -1904 5904 5741 324 178 99 40 chr5 32284387 32284488 -170801044 + L1ME4a LINE L1 5512 5618 -503 974 144 0 0 chr5 32284518 32284657 -170800875 + AluJo SINE Alu 120 258 -54 364 258 94 6 chr5 32284711 32284783 -170800749 + L1ME4a LINE L1 5712 5776 -345 808 232 34 73 chr5 32284783 32285016 -170800516 - MER58A DNA MER1_type 0 224 1 364 258 94 6 chr5 32285016 32285102 -170800430 + L1ME4a LINE L1 5776 5884 -237 225 143 0 0 chr5 32285189 32285231 -170800301 - LTR66 LTR ERVL -172 438 397 1638 106 68 0 chr5 32285545 32285782 -170799750 + AluSg SINE Alu 1 253 -57 239 0 32 0 chr5 32285795 32285826 -170799706 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1241 172 60 84 chr5 32285984 32286316 -170799216 - MER44D DNA MER2_type -6 603 10 38 0 0 0 chr5 32287005 32287043 -170798489 + AT_rich Low_complexity Low_complexity 1 38 0 577 211 0 38 chr5 32288128 32288261 -170797271 - L2 LINE L2 -1 3312 3185 21 0 0 0 chr5 32288420 32288441 -170797091 + AT_rich Low_complexity Low_complexity 1 21 0 2276 98 3 7 chr5 32288470 32288776 -170796756 + AluSx SINE Alu 1 305 -7 348 64 0 0 chr5 32289193 32289240 -170796292 + (CA)n Simple_repeat Simple_repeat 2 48 0 1768 108 0 0 chr5 32289384 32289616 -170795916 - AluSg/x SINE Alu -5 307 76 2138 96 72 86 chr5 32289619 32290021 -170795511 + LTR14B LTR ERVK 3 608 0 5574 54 65 9 chr5 32290021 32290765 -170794767 + HERVK14 LTR ERVK 1 785 -5160 8969 66 25 15 chr5 32290801 32291141 -170794391 + HERV17 LTR ERV1 824 1159 -7467 198 0 0 0 chr5 32291141 32291163 -170794369 + (TA)n Simple_repeat Simple_repeat 1 22 0 8969 66 25 15 chr5 32291163 32292004 -170793528 + HERV17 LTR ERV1 1159 2016 -6610 * 11196 43 5 3 chr5 32291987 32293309 -170792223 + HERV17 LTR ERV1 2430 3754 -4872 1284 20 7 0 chr5 32293288 32293436 -170792096 + HERV17 LTR ERV1 5405 5553 -3073 * 371 41 0 0 chr5 32293435 32293484 -170792048 + HERV17 LTR ERV1 433 481 -8145 * 3534 55 11 16 chr5 32293484 32294140 -170791392 + HERVK14 LTR ERVK 5038 5759 -186 276 249 0 18 chr5 32294140 32294215 -170791317 + MER41C LTR ERV1 1 61 -493 829 19 76 19 chr5 32294215 32294320 -170791212 + HERVK14 LTR ERVK 5835 5945 0 267 85 21 43 chr5 32294323 32294370 -170791162 + LTR14B LTR ERVK 1 46 -562 * 2131 115 85 24 chr5 32294358 32294733 -170790799 + LTR14B LTR ERVK 211 608 0 523 111 0 0 chr5 32294733 32294814 -170790718 - AluJ/FLAM SINE Alu -230 82 2 207 358 118 28 chr5 32295653 32295694 -170789838 - L2 LINE L2 -652 2662 2626 1412 174 112 41 chr5 32295694 32296034 -170789498 - MLT1A1 LTR MaLR -1 364 1 207 358 118 28 chr5 32296034 32296160 -170789372 - L2 LINE L2 -688 2626 2513 1149 201 9 14 chr5 32296160 32296379 -170789153 - MER20 DNA MER1_type 0 219 2 207 358 118 28 chr5 32296379 32296462 -170789070 - L2 LINE L2 -801 2513 2439 2109 111 7 3 chr5 32296462 32296750 -170788782 + AluSq SINE Alu 1 289 -24 207 358 118 28 chr5 32296750 32296888 -170788644 - L2 LINE L2 -875 2439 2237 2336 86 20 0 chr5 32297389 32297693 -170787839 + AluSp SINE Alu 1 310 -3 451 229 153 93 chr5 32297767 32298133 -170787399 + MLT1J1 LTR MaLR 58 445 -1 1281 135 0 30 chr5 32298219 32298419 -170787113 + MSTA LTR MaLR 233 426 -2 8411 147 20 120 chr5 32298419 32298985 -170786547 + MSTA-int LTR MaLR 3 624 -1027 2181 104 7 0 chr5 32298985 32299398 -170786134 - AluSq SINE Alu 0 415 1 8411 147 20 120 chr5 32299398 32300656 -170784876 + MSTA-int LTR MaLR 624 1645 -6 2141 142 67 24 chr5 32300668 32300732 -170784800 + MSTA LTR MaLR 39 99 -329 2347 157 52 0 chr5 32300732 32301139 -170784393 + MSTA LTR MaLR 1 428 0 2141 142 67 24 chr5 32301139 32301448 -170784084 + MSTA LTR MaLR 99 428 0 24 0 0 0 chr5 32301862 32301886 -170783646 + AT_rich Low_complexity Low_complexity 1 24 0 2266 95 6 22 chr5 32301951 32302268 -170783264 + AluSp SINE Alu 1 312 -1 392 178 84 63 chr5 32302593 32302784 -170782748 - L1MC5 LINE L1 -409 7552 7358 259 59 0 0 chr5 32302923 32302957 -170782575 + MLT2D LTR ERVL 1 34 -380 397 117 0 0 chr5 32302960 32303020 -170782512 + MLT1E1 LTR MaLR 595 654 0 1671 127 0 4 chr5 32303049 32303285 -170782247 + AluJb SINE Alu 52 286 -26 1864 163 0 22 chr5 32303371 32303690 -170781842 + AluJo SINE Alu 1 312 0 2067 150 0 0 chr5 32303810 32304110 -170781422 - AluJb SINE Alu -12 300 1 251 371 56 35 chr5 32304179 32304465 -170781067 + L2 LINE L2 2976 3267 -5 2358 90 0 3 chr5 32307585 32307886 -170777646 - AluY SINE Alu -11 300 1 589 145 60 0 chr5 32307889 32308006 -170777526 - MER58 DNA MER1_type -34 2386 2263 * 840 208 48 0 chr5 32308000 32308168 -170777364 - MER58 DNA MER1_type -165 176 1 207 0 0 0 chr5 32308583 32308606 -170776926 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 402 310 119 9 chr5 32309329 32309555 -170775977 + MIR SINE MIR 12 262 0 415 211 138 24 chr5 32310276 32310399 -170775133 - MIR SINE MIR -98 164 28 534 165 220 28 chr5 32311463 32311572 -170773960 - FLAM_C SINE Alu -3 130 1 2429 82 0 13 chr5 32312874 32313189 -170772343 + AluY SINE Alu 1 311 0 2341 119 0 0 chr5 32313597 32313909 -170771623 + AluSx SINE Alu 1 312 0 245 304 51 0 chr5 32314235 32314314 -170771218 + MIR SINE MIR 38 120 -142 1123 84 13 0 chr5 32316545 32316700 -170768832 - L1PA8 LINE L1 -3 6169 6013 194 321 179 0 chr5 32317260 32317366 -170768166 - L2 LINE L2 -10 3262 3138 2057 128 10 0 chr5 32317849 32318158 -170767374 - AluSq SINE Alu -18 295 1 404 289 48 18 chr5 32318437 32318603 -170766929 - LTR16B LTR ERVL -229 235 65 242 329 42 48 chr5 32318913 32319202 -170766330 - L2 LINE L2 -1096 2218 1932 1749 164 27 20 chr5 32319964 32320257 -170765275 - AluJb SINE Alu -17 295 1 1247 95 0 4 chr5 32324138 32324587 -170760945 + (CCAA)n Simple_repeat Simple_repeat 1 446 0 1085 71 32 0 chr5 32324978 32325132 -170760400 + MER41B LTR ERV1 475 633 -2 466 305 74 19 chr5 32325506 32325762 -170759770 + MLT1J LTR MaLR 224 493 -18 4166 117 6 6 chr5 32326321 32326954 -170758578 + MER41B LTR ERV1 1 633 -2 226 293 94 38 chr5 32327732 32328019 -170757513 + HAL1 LINE L1 2169 2471 -36 339 25 0 0 chr5 32328457 32328497 -170757035 + (CA)n Simple_repeat Simple_repeat 2 41 0 2079 134 13 0 chr5 32329610 32329915 -170755617 + AluSx SINE Alu 3 311 -1 343 169 0 24 chr5 32329915 32329998 -170755534 + GA-rich Low_complexity Low_complexity 1 81 0 1605 197 153 22 chr5 32330703 32331149 -170754383 + MLT1D LTR MaLR 2 505 0 2142 146 0 15 chr5 32331258 32331600 -170753932 + MER1B DNA MER1_type 1 337 0 1341 227 71 17 chr5 32331890 32332243 -170753289 + MLT1A2 LTR MaLR 3 374 0 2554 185 25 70 chr5 32332427 32332699 -170752833 + MLT1E3 LTR MaLR 1 284 -340 1333 211 21 18 chr5 32332699 32332979 -170752553 + AluJo SINE Alu 1 281 -31 222 37 0 0 chr5 32332983 32333010 -170752522 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2554 185 25 70 chr5 32333010 32333386 -170752146 + MLT1E3 LTR MaLR 287 624 0 292 310 61 37 chr5 32334123 32334368 -170751164 - MLT1K LTR MaLR -19 569 319 289 309 78 54 chr5 32335052 32335256 -170750276 - L2 LINE L2 -557 2757 2549 187 229 83 64 chr5 32336487 32336596 -170748936 - L2 LINE L2 -911 2403 2293 1874 168 33 41 chr5 32337019 32337241 -170748291 - MLT1B LTR MaLR -1 389 170 2431 81 10 0 chr5 32337241 32337549 -170747983 - AluSp SINE Alu -2 311 1 1874 168 33 41 chr5 32337549 32337718 -170747814 - MLT1B LTR MaLR -220 170 1 1833 184 7 0 chr5 32338172 32338482 -170747050 - AluJo SINE Alu 0 312 1 2217 138 0 0 chr5 32338488 32338792 -170746740 - AluSx SINE Alu -8 304 1 529 293 66 0 chr5 32339838 32340005 -170745527 + MIR SINE MIR 20 197 -65 244 138 35 17 chr5 32340260 32340318 -170745214 + (TA)n Simple_repeat Simple_repeat 1 59 0 616 226 0 15 chr5 32341074 32341211 -170744321 - MIR SINE MIR 0 262 128 1234 148 229 4 chr5 32341603 32341847 -170743685 + AluSq SINE Alu 1 299 -4 337 276 0 0 chr5 32342213 32342289 -170743243 + L2 LINE L2 3238 3313 0 995 262 53 42 chr5 32342298 32342730 -170742802 + HAL1b LINE L1 367 803 -545 779 316 128 44 chr5 32343675 32344649 -170740883 - L2 LINE L2 -1 3271 2222 1845 207 80 4 chr5 32345545 32345995 -170739537 + MLT1E2 LTR MaLR 143 626 0 181 372 145 23 chr5 32346130 32346474 -170739058 + L2 LINE L2 2425 2810 -504 183 308 77 44 chr5 32346568 32346659 -170738873 + L2 LINE L2 2950 3043 -229 1938 162 0 3 chr5 32347870 32348167 -170737365 + AluJb SINE Alu 1 296 -16 27 0 0 0 chr5 32348345 32348372 -170737160 + AT_rich Low_complexity Low_complexity 1 27 0 670 136 0 0 chr5 32349158 32349261 -170736271 - FLAM_C SINE Alu -32 111 9 2261 117 10 0 chr5 32349277 32349586 -170735946 - AluSx SINE Alu 0 312 1 199 225 0 0 chr5 32350208 32350248 -170735284 - L2 LINE L2 0 3313 3274 27 0 0 0 chr5 32350480 32350507 -170735025 + AT_rich Low_complexity Low_complexity 1 27 0 1103 53 0 0 chr5 32350507 32350639 -170734893 - AluY SINE Alu -179 132 1 233 282 104 43 chr5 32351208 32351371 -170734161 + L2 LINE L2 1211 1383 -1931 880 336 78 15 chr5 32351451 32352038 -170733494 + L2 LINE L2 1827 2450 -864 1480 288 76 48 chr5 32352195 32352941 -170732591 + HAL1 LINE L1 146 912 -1595 720 241 32 66 chr5 32353104 32353351 -170732181 + HAL1 LINE L1 1953 2184 -323 243 79 0 0 chr5 32353351 32353389 -170732143 + (TG)n Simple_repeat Simple_repeat 2 39 0 720 241 32 66 chr5 32353389 32353518 -170732014 + HAL1 LINE L1 2184 2316 -191 272 250 14 0 chr5 32353521 32353593 -170731939 + MER116 DNA Mariner 1 73 -7 356 267 124 0 chr5 32353594 32353755 -170731777 + HAL1 LINE L1 2326 2506 -1 46 62 0 0 chr5 32354379 32354460 -170731072 + AT_rich Low_complexity Low_complexity 1 81 0 2467 99 14 11 chr5 32354719 32355084 -170730448 - THE1C LTR MaLR -9 366 1 307 265 41 10 chr5 32357152 32357250 -170728282 + L2 LINE L2 3169 3269 -3 278 252 156 15 chr5 32357510 32357645 -170727887 + MER117 DNA MER1_type 3 156 -41 247 127 42 84 chr5 32357853 32357924 -170727608 + MLT1J1 LTR MaLR 50 117 -329 276 30 0 0 chr5 32358430 32358463 -170727069 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 207 69 0 0 chr5 32359095 32359124 -170726408 + (T)n Simple_repeat Simple_repeat 1 29 0 180 0 0 0 chr5 32359208 32359228 -170726304 + (T)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chr5 32360477 32360498 -170725034 + (A)n Simple_repeat Simple_repeat 1 21 0 2526 54 0 10 chr5 32361680 32361993 -170723539 + AluY SINE Alu 1 310 -1 345 47 0 0 chr5 32363317 32363360 -170722172 + (TG)n Simple_repeat Simple_repeat 1 43 0 549 269 12 25 chr5 32367058 32367218 -170718314 - MIR SINE MIR 0 262 105 306 246 15 0 chr5 32367432 32367497 -170718035 - L2 LINE L2 0 3313 3248 2263 117 0 3 chr5 32367673 32367972 -170717560 - AluSx SINE Alu -14 298 1 220 262 106 71 chr5 32368009 32368150 -170717382 - L2 LINE L2 -543 2771 2626 241 263 121 10 chr5 32368708 32368807 -170716725 + MIR SINE MIR 97 206 -56 340 362 73 13 chr5 32369048 32369280 -170716252 + MIR SINE MIR 3 248 -14 195 129 0 0 chr5 32371151 32371182 -170714350 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chr5 32371444 32371468 -170714064 + AT_rich Low_complexity Low_complexity 1 24 0 826 143 66 55 chr5 32371524 32371706 -170713826 - MER20 DNA MER1_type -34 185 2 690 335 23 5 chr5 32372929 32373147 -170712385 - MIR SINE MIR -18 244 23 900 267 105 28 chr5 32373348 32373711 -170711821 - L2 LINE L2 -5 3308 2918 22 0 0 0 chr5 32374002 32374024 -170711508 + AT_rich Low_complexity Low_complexity 1 22 0 1486 11 6 11 chr5 32374405 32374583 -170710949 + L1PA5 LINE L1 5978 6154 0 288 0 0 0 chr5 32375760 32375792 -170709740 + (TG)n Simple_repeat Simple_repeat 1 32 0 251 291 52 112 chr5 32375869 32376014 -170709518 - L2 LINE L2 -420 2894 2742 183 42 0 0 chr5 32376014 32376038 -170709494 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 251 291 52 112 chr5 32376038 32376056 -170709476 - L2 LINE L2 -572 2742 2724 1713 155 30 0 chr5 32376056 32376321 -170709211 - AluJb SINE Alu -39 273 1 251 291 52 112 chr5 32376321 32376407 -170709125 - L2 LINE L2 -590 2724 2659 199 322 63 21 chr5 32376408 32376551 -170708981 - L2 LINE L2 -894 2420 2272 182 200 0 0 chr5 32376662 32376697 -170708835 + L2 LINE L2 3264 3298 -15 1339 154 157 27 chr5 32376845 32377177 -170708355 + THE1C LTR MaLR 1 375 0 9111 145 10 24 chr5 32377179 32378780 -170706752 + MSTA-int LTR MaLR 3 1580 0 1572 141 258 3 chr5 32378780 32379121 -170706411 + MSTA LTR MaLR 1 428 0 1055 267 59 34 chr5 32381465 32382066 -170703466 + L2 LINE L2 2661 3285 -28 653 83 0 0 chr5 32382178 32382262 -170703270 - AluS SINE Alu -228 84 1 1007 225 113 6 chr5 32382821 32383132 -170702400 - MER2 DNA MER2_type 0 344 1 2452 76 0 0 chr5 32384044 32384345 -170701187 - AluSc SINE Alu -8 301 1 395 293 21 21 chr5 32384364 32384504 -170701028 + MER5B DNA MER1_type 37 176 -2 527 252 32 92 chr5 32385357 32385575 -170699957 + L2 LINE L2 3070 3274 -39 1317 43 0 22 chr5 32385761 32385945 -170699587 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 280 111 37 0 chr5 32385947 32386001 -170699531 + CT-rich Low_complexity Low_complexity 3 58 0 1808 151 48 0 chr5 32386003 32386294 -170699238 - AluSx SINE Alu -7 305 1 1658 185 3 7 chr5 32387605 32387892 -170697640 - AluJo SINE Alu -22 290 5 535 323 119 16 chr5 32390066 32390385 -170695147 - L3b LINE CR1 -117 1466 1115 796 303 78 24 chr5 32390661 32391044 -170694488 - MLT1I LTR MaLR -3 406 3 378 269 21 50 chr5 32391978 32392119 -170693413 + MLT1K LTR MaLR 450 586 -2 541 326 46 17 chr5 32392836 32393075 -170692457 - MIR SINE MIR -11 251 6 560 307 0 28 chr5 32393159 32393338 -170692194 - MER91B DNA MER1_type -16 174 1 189 314 80 22 chr5 32394965 32395102 -170690430 - MIR3 SINE MIR -6 202 58 549 284 91 11 chr5 32395490 32395666 -170689866 + L3 LINE CR1 1355 1544 -33 351 238 0 8 chr5 32395870 32395988 -170689544 - L1MC4 LINE L1 -1339 6983 1995 201 74 0 0 chr5 32395990 32396017 -170689515 + (CA)n Simple_repeat Simple_repeat 2 28 0 182 347 31 41 chr5 32396581 32396679 -170688853 - MIR3 SINE MIR -31 177 81 259 277 0 15 chr5 32396711 32396776 -170688756 - MIR3 SINE MIR -23 185 122 319 328 82 6 chr5 32397203 32397374 -170688158 + MIR SINE MIR 65 248 -14 253 156 266 16 chr5 32398699 32398763 -170686769 - MADE1 DNA Mariner 0 80 1 21 0 0 0 chr5 32399817 32399838 -170685694 + AT_rich Low_complexity Low_complexity 1 21 0 407 240 58 0 chr5 32400013 32400117 -170685415 + L1ME LINE L1 5508 5617 -504 357 140 0 0 chr5 32401732 32401789 -170683743 - L2 LINE L2 0 3313 3257 2260 67 0 11 chr5 32451789 32452073 -170633459 - AluY SINE Alu -30 281 1 342 221 0 0 chr5 32452075 32452170 -170633362 + L1M4 LINE L1 4376 4470 -1676 270 168 80 24 chr5 32452208 32452333 -170633199 + (TTAA)n Simple_repeat Simple_repeat 4 135 0 207 0 0 0 chr5 32452989 32453012 -170632520 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1591 203 130 53 chr5 32453340 32453466 -170632066 + MLT1D LTR MaLR 1 116 -389 863 135 8 30 chr5 32453466 32453599 -170631933 + FLAM_C SINE Alu 1 130 -3 1591 203 130 53 chr5 32453599 32453941 -170631591 + MLT1D LTR MaLR 116 505 0 226 175 100 0 chr5 32453957 32453997 -170631535 - Alu SINE Alu -141 159 116 358 152 45 0 chr5 32454058 32454124 -170631408 - L1MB7 LINE L1 -207 5977 5909 248 245 208 28 chr5 32454453 32454559 -170630973 + L2 LINE L2 3189 3313 0 2492 161 78 33 chr5 32455025 32455577 -170629955 - MER34C LTR ERV1 -5 580 4 370 65 98 33 chr5 32455776 32455868 -170629664 + GA-rich Low_complexity Low_complexity 5 102 0 2083 114 24 0 chr5 32455955 32456244 -170629288 + AluSx SINE Alu 1 296 -16 891 259 62 99 chr5 32456791 32456850 -170628682 - HAL1 LINE L1 0 2507 2447 2411 71 0 0 chr5 32456850 32457132 -170628400 + AluSx SINE Alu 9 290 -22 891 259 62 99 chr5 32457132 32457416 -170628116 - HAL1 LINE L1 -60 2447 2154 2135 151 0 0 chr5 32457416 32457727 -170627805 - AluSx SINE Alu -1 311 1 891 259 62 99 chr5 32457727 32458178 -170627354 - HAL1 LINE L1 -353 2154 1742 267 133 0 0 chr5 32458225 32458270 -170627262 + (TG)n Simple_repeat Simple_repeat 1 45 0 3209 118 35 0 chr5 32458319 32458770 -170626762 - LTR24 LTR ERV1 0 467 1 502 211 90 8 chr5 32458770 32458903 -170626629 - LTR24-int LTR ERV1 0 5123 4980 2104 130 3 0 chr5 32458932 32459232 -170626300 + AluSx SINE Alu 4 304 -8 2017 118 7 0 chr5 32459697 32459967 -170625565 - AluSx SINE Alu -14 298 27 591 232 97 69 chr5 32459967 32460256 -170625276 - LTR9 LTR ERV1 0 612 316 * 1393 184 19 126 chr5 32460230 32460365 -170625167 - LTR9 LTR ERV1 -229 383 235 2521 75 0 0 chr5 32460365 32460670 -170624862 - AluY SINE Alu -1 310 6 1393 184 19 126 chr5 32460670 32460963 -170624569 - LTR9 LTR ERV1 -377 235 1 541 346 39 41 chr5 32461047 32461349 -170624183 - LTR23-int LTR ERV1 -596 6526 6224 2497 163 74 59 chr5 32461349 32461888 -170623644 - LTR10B LTR ERV1 0 547 1 541 346 39 41 chr5 32461888 32462099 -170623433 - LTR23-int LTR ERV1 -898 6224 6014 1265 135 0 50 chr5 32462230 32462467 -170623065 - AluSg/x SINE Alu 0 318 92 507 176 12 0 chr5 32462567 32462652 -170622880 + AluYa5 SINE Alu 84 169 -142 * 680 117 0 19 chr5 32462647 32462750 -170622782 + AluSg/x SINE Alu 198 298 -11 2270 102 0 0 chr5 32462755 32463049 -170622483 + AluSq SINE Alu 1 294 -19 927 172 55 0 chr5 32463133 32463296 -170622236 - AluSg/x SINE Alu -14 296 125 2253 121 0 0 chr5 32463530 32463836 -170621696 + AluSg SINE Alu 5 310 0 2372 95 3 0 chr5 32464491 32464796 -170620736 - AluSp SINE Alu -7 306 1 334 288 35 70 chr5 32465667 32465896 -170619636 - LTR23-int LTR ERV1 -3797 4938 4718 324 305 70 91 chr5 32466277 32466496 -170619036 - LTR23-int LTR ERV1 -4374 4052 3830 1812 119 101 0 chr5 32466496 32466764 -170618768 + AluSg SINE Alu 1 295 -15 324 305 70 91 chr5 32466764 32466948 -170618584 - LTR23-int LTR ERV1 -4596 3830 3660 2288 87 33 3 chr5 32466948 32467248 -170618284 - AluSg1 SINE Alu 0 309 1 324 305 70 91 chr5 32467248 32467361 -170618171 - LTR23-int LTR ERV1 -4766 3660 3546 675 309 102 25 chr5 32467426 32467893 -170617639 - LTR23-int LTR ERV1 -4064 3730 219 682 164 19 0 chr5 32468019 32468123 -170617409 - U6 snRNA snRNA -1 106 1 2125 125 0 0 chr5 32468295 32468583 -170616949 - AluSc SINE Alu -21 288 1 2449 82 3 0 chr5 32469557 32469861 -170615671 - AluY SINE Alu -6 305 1 232 33 67 0 chr5 32469959 32469989 -170615543 + U6 snRNA snRNA 1 32 -75 1037 181 0 0 chr5 32469996 32470162 -170615370 + AluJb SINE Alu 131 296 -16 389 187 0 22 chr5 32470291 32470382 -170615150 + GA-rich Low_complexity Low_complexity 2 90 0 2388 53 0 20 chr5 32470473 32470772 -170614760 + AluY SINE Alu 1 293 -18 481 192 0 29 chr5 32471064 32471168 -170614364 - LTR23-int LTR ERV1 -4378 745 645 391 272 98 22 chr5 32471880 32472104 -170613428 - L1ME4a LINE L1 -226 5895 5655 313 278 102 9 chr5 32472125 32472346 -170613186 - L1ME4a LINE L1 -722 5575 5317 307 289 149 82 chr5 32472471 32472943 -170612589 - L1ME4a LINE L1 -989 5157 4718 769 151 0 17 chr5 32472943 32473062 -170612470 + FLAM_C SINE Alu 1 117 -16 307 289 149 82 chr5 32473062 32473133 -170612399 - L1ME4a LINE L1 -1428 4718 4653 1914 167 45 12 chr5 32473133 32473469 -170612063 - MER7A DNA MER2_type 0 346 2 307 289 149 82 chr5 32473469 32473582 -170611950 - L1ME4a LINE L1 -1493 4653 4456 447 269 88 0 chr5 32473769 32473929 -170611603 - MIR SINE MIR -22 240 67 342 294 100 61 chr5 32474720 32475131 -170610401 - L1ME4a LINE L1 -2028 4118 3692 428 288 184 14 chr5 32475616 32475828 -170609704 - MIR SINE MIR -4 258 11 228 271 139 8 chr5 32475970 32476099 -170609433 - L1ME4a LINE L1 -3264 2882 2737 1166 303 46 39 chr5 32476289 32476900 -170608632 + HERVL LTR ERVL 3680 4294 -1360 338 341 61 0 chr5 32476989 32477153 -170608379 + LTR16A LTR ERVL 79 252 -198 743 87 0 29 chr5 32479201 32479304 -170606228 + HY3 scRNA scRNA 1 100 -1 2147 110 0 7 chr5 32479596 32479895 -170605637 + AluSx SINE Alu 1 297 -15 2170 102 0 56 chr5 32479913 32480237 -170605295 + AluSx SINE Alu 1 306 -6 1646 160 26 45 chr5 32480550 32480696 -170604836 + AluJb SINE Alu 1 148 -164 2325 97 3 0 chr5 32480696 32480994 -170604538 + AluSp SINE Alu 1 299 -14 1646 160 26 45 chr5 32480994 32481159 -170604373 + AluJb SINE Alu 148 306 -6 566 237 20 20 chr5 32481172 32481324 -170604208 + L1MB8 LINE L1 6027 6178 0 22 88 0 0 chr5 32481473 32481530 -170604002 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr5 32481666 32481689 -170603843 + AT_rich Low_complexity Low_complexity 1 23 0 2214 108 3 0 chr5 32482346 32482643 -170602889 - AluSx SINE Alu -14 298 1 1593 174 23 10 chr5 32483274 32483579 -170601953 + L1MB2 LINE L1 5863 6171 0 30 0 0 0 chr5 32483641 32483671 -170601861 + AT_rich Low_complexity Low_complexity 1 30 0 504 225 69 81 chr5 32483738 32483898 -170601634 - MIR SINE MIR -95 167 10 264 326 82 20 chr5 32483975 32484073 -170601459 - L2 LINE L2 -23 3249 3146 1681 157 40 23 chr5 32484944 32485244 -170600288 + AluJo SINE Alu 1 305 -7 240 35 0 0 chr5 32485441 32485470 -170600062 + (CA)n Simple_repeat Simple_repeat 1 29 0 227 200 18 0 chr5 32485491 32485546 -170599986 + (CA)n Simple_repeat Simple_repeat 2 57 0 1596 231 122 49 chr5 32486051 32486605 -170598927 + MLT1E2 LTR MaLR 4 623 -3 333 68 0 0 chr5 32487748 32487792 -170597740 + (CA)n Simple_repeat Simple_repeat 2 45 0 1979 141 0 13 chr5 32487876 32488181 -170597351 + AluJo SINE Alu 1 301 -11 1340 157 19 9 chr5 32488257 32488473 -170597059 + MER20 DNA MER1_type 1 218 -1 699 242 36 62 chr5 32488874 32489068 -170596464 + MER5A DNA MER1_type 1 189 0 2088 136 3 0 chr5 32489491 32489793 -170595739 + AluJb SINE Alu 1 303 -9 215 317 33 0 chr5 32490418 32490478 -170595054 + MIR SINE MIR 45 106 -102 2495 83 0 0 chr5 32492428 32492741 -170592791 + AluSq SINE Alu 1 313 0 2224 122 0 13 chr5 32493647 32493783 -170591749 + AluSx SINE Alu 1 137 -175 2427 88 3 0 chr5 32493783 32494090 -170591442 + AluSx SINE Alu 1 308 -4 2224 122 0 13 chr5 32494090 32494264 -170591268 + AluSx SINE Alu 137 307 -5 806 320 96 64 chr5 32496059 32496229 -170589303 + L2 LINE L2 1611 1774 -1540 1199 214 130 49 chr5 32496229 32496575 -170588957 + MLT1A2 LTR MaLR 1 374 0 806 320 96 64 chr5 32496575 32497411 -170588121 + L2 LINE L2 1774 2650 -664 2306 80 40 0 chr5 32498189 32498488 -170587044 + AluY SINE Alu 1 311 0 991 167 13 13 chr5 32498864 32499020 -170586512 - FRAM SINE Alu -10 156 1 730 85 0 0 chr5 32499293 32499387 -170586145 + AluSp/q SINE Alu 211 304 -9 338 289 70 106 chr5 32499417 32499690 -170585842 + L2 LINE L2 2995 3257 -15 222 310 52 9 chr5 32499770 32499886 -170585646 - L2 LINE L2 -1 3271 3151 309 138 52 17 chr5 32501462 32501520 -170584012 - MIR SINE MIR -187 75 16 2124 117 3 0 chr5 32501691 32501989 -170583543 - AluSx SINE Alu -13 299 1 21 0 0 0 chr5 32501998 32502019 -170583513 + AT_rich Low_complexity Low_complexity 1 21 0 184 273 0 45 chr5 32502345 32502411 -170583121 - L3 LINE CR1 -2 1575 1513 1172 170 5 45 chr5 32502433 32502657 -170582875 + AluJo SINE Alu 84 298 -14 885 191 30 6 chr5 32503298 32503466 -170582066 - MER58B DNA MER1_type 0 341 170 944 161 68 6 chr5 32503466 32503627 -170581905 + FAM SINE Alu 1 171 -4 1289 195 17 0 chr5 32503668 32503909 -170581623 - Charlie1a DNA MER1_type -276 1179 935 966 215 139 11 chr5 32503924 32504147 -170581385 - Charlie1a DNA MER1_type -2229 532 339 189 0 0 0 chr5 32504147 32504168 -170581364 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 966 215 139 11 chr5 32504168 32504394 -170581138 - Charlie1a DNA MER1_type -2422 339 4 2376 81 0 10 chr5 32504981 32505288 -170580244 + AluY SINE Alu 8 311 0 945 288 156 9 chr5 32506473 32506903 -170578629 - MLT1J LTR MaLR -16 495 3 542 218 98 12 chr5 32507484 32507647 -170577885 - MER58C DNA MER1_type -1 214 32 1746 173 51 27 chr5 32507751 32508087 -170577445 - MER2 DNA MER2_type 0 344 1 1713 154 13 33 chr5 32508496 32508795 -170576737 + AluJb SINE Alu 1 293 -19 482 286 13 0 chr5 32508806 32508956 -170576576 + MIR SINE MIR 38 188 -63 23 86 0 0 chr5 32509466 32509524 -170576008 + AT_rich Low_complexity Low_complexity 1 58 0 396 0 0 0 chr5 32509841 32509885 -170575647 + (TG)n Simple_repeat Simple_repeat 2 45 0 1258 164 36 86 chr5 32510245 32510525 -170575007 + AluJo SINE Alu 39 304 -8 557 211 134 6 chr5 32510552 32510723 -170574809 - MIR SINE MIR 0 262 70 2219 68 0 58 chr5 32510904 32511214 -170574318 + AluY SINE Alu 1 292 -19 2120 125 0 7 chr5 32512021 32512326 -170573206 + AluJb SINE Alu 1 303 -9 2546 44 0 7 chr5 32513037 32513334 -170572198 + AluY SINE Alu 1 295 -16 1544 171 19 11 chr5 32513401 32513670 -170571862 + AluJo SINE Alu 14 284 -28 23 0 0 0 chr5 32513706 32513729 -170571803 + AT_rich Low_complexity Low_complexity 1 23 0 2243 99 10 0 chr5 32513799 32514093 -170571439 - AluSq SINE Alu -16 297 1 271 310 170 0 chr5 32515019 32515119 -170570413 - MIR SINE MIR -73 135 19 2267 144 40 11 chr5 32515260 32515607 -170569925 - THE1B LTR MaLR -7 357 1 12211 84 23 13 chr5 32515607 32516755 -170568777 - THE1B-int LTR MaLR 0 1580 410 2186 125 3 0 chr5 32516755 32517050 -170568482 + AluSx SINE Alu 1 296 -16 12211 84 23 13 chr5 32517050 32517465 -170568067 - THE1B-int LTR MaLR -1170 410 1 2245 137 41 52 chr5 32517465 32517673 -170567859 - THE1B LTR MaLR 0 364 160 2256 112 3 0 chr5 32517673 32517976 -170567556 + AluSp SINE Alu 1 304 -9 2245 137 41 52 chr5 32517976 32518133 -170567399 - THE1B LTR MaLR -204 160 3 298 143 130 39 chr5 32518216 32518293 -170567239 - LTR23 LTR ERV1 -78 359 276 1962 144 20 10 chr5 32518329 32518627 -170566905 + AluJb SINE Alu 1 301 -11 2338 81 14 0 chr5 32519301 32519597 -170565935 - AluSp SINE Alu -13 300 1 22 0 0 0 chr5 32519804 32519826 -170565706 + AT_rich Low_complexity Low_complexity 1 22 0 552 133 105 0 chr5 32519833 32519938 -170565594 + L1MA4 LINE L1 6178 6293 -7 2445 177 115 0 chr5 32520173 32520626 -170564906 + MLT1D LTR MaLR 1 505 0 340 241 167 0 chr5 32521237 32521345 -170564187 + MIR SINE MIR 84 209 -53 231 61 0 0 chr5 32521884 32521917 -170563615 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 556 231 28 0 chr5 32521968 32522076 -170563456 - L2 LINE L2 0 3313 3203 457 77 0 90 chr5 32522193 32522271 -170563261 - FLAM_C SINE Alu -4 139 69 784 135 7 64 chr5 32522197 32522338 -170563194 - AluJo/FLAM SINE Alu -169 133 1 23 0 0 0 chr5 32523300 32523323 -170562209 + AT_rich Low_complexity Low_complexity 1 23 0 2150 103 0 26 chr5 32523930 32524240 -170561292 + AluY SINE Alu 1 302 -9 2060 134 7 13 chr5 32524310 32524617 -170560915 - AluJo SINE Alu -7 305 1 2402 78 10 7 chr5 32524884 32525191 -170560341 - AluSc SINE Alu -1 308 1 878 229 117 65 chr5 32525192 32525533 -170559999 - L1MA9 LINE L1 -38 6274 5916 2502 38 7 3 chr5 32526088 32526381 -170559151 + AluY SINE Alu 1 294 -17 2446 76 0 7 chr5 32526578 32526881 -170558651 + AluSg SINE Alu 1 301 -9 193 365 88 7 chr5 32528029 32528166 -170557366 + L2 LINE L2 3125 3272 0 371 263 78 54 chr5 32529308 32529810 -170555722 + L1MC4a LINE L1 4325 4838 -1308 460 290 93 37 chr5 32529810 32530079 -170555453 - MLT1J2 LTR MaLR -8 442 159 374 239 33 0 chr5 32530086 32530178 -170555354 - MLT1J1 LTR MaLR -351 95 1 1683 146 14 41 chr5 32530392 32530686 -170554846 - AluJb SINE Alu -16 296 11 213 94 0 0 chr5 32530698 32530730 -170554802 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 603 315 62 31 chr5 32530733 32531085 -170554447 - HERV16 LTR ERVL -4375 621 259 985 304 43 35 chr5 32531287 32531655 -170553877 - LTR16C LTR ERVL -1 490 120 462 302 12 64 chr5 32531850 32532022 -170553510 + L1MC4a LINE L1 5494 5656 -2152 2118 186 62 105 chr5 32532035 32532419 -170553113 + LTR8A LTR ERV1 1 347 -380 2275 126 3 0 chr5 32532419 32532720 -170552812 - AluSx SINE Alu -10 302 1 2118 186 62 105 chr5 32532720 32532981 -170552551 + LTR8A LTR ERV1 347 618 -109 2552 104 16 16 chr5 32532998 32533373 -170552159 - THE1C LTR MaLR 0 375 1 10832 105 33 11 chr5 32533373 32533430 -170552102 - THE1C-int LTR MaLR 0 1580 1526 2177 117 3 0 chr5 32533430 32533713 -170551819 + AluSx SINE Alu 1 284 -28 366 23 0 0 chr5 32533713 32533756 -170551776 + (CA)n Simple_repeat Simple_repeat 2 44 0 10832 105 33 11 chr5 32533756 32535227 -170550305 - THE1C-int LTR MaLR -53 1527 17 2638 101 13 16 chr5 32535231 32535607 -170549925 - THE1C LTR MaLR 0 375 1 414 117 64 138 chr5 32535610 32535704 -170549828 + LTR8A LTR ERV1 641 727 0 253 309 133 6 chr5 32535727 32535908 -170549624 + L1MC4a LINE L1 5712 5915 -1893 180 111 0 0 chr5 32535914 32535941 -170549591 + (T)n Simple_repeat Simple_repeat 1 27 0 2119 118 42 63 chr5 32536162 32536545 -170548987 + THE1C LTR MaLR 1 375 0 1909 149 10 13 chr5 32536714 32536850 -170548682 + AluJb SINE Alu 1 136 -176 2268 107 3 3 chr5 32536850 32537149 -170548383 + AluSq SINE Alu 1 299 -14 1909 149 10 13 chr5 32537149 32537314 -170548218 + AluJb SINE Alu 136 301 -11 424 302 71 4 chr5 32537533 32537815 -170547717 + L1MC4a LINE L1 4779 5076 -1070 21 57 0 0 chr5 32537947 32537982 -170547550 + AT_rich Low_complexity Low_complexity 1 35 0 629 278 99 50 chr5 32538005 32538429 -170547103 + L1MC4a LINE L1 5310 5754 -367 604 154 442 24 chr5 32538535 32538743 -170546789 + LTR48 LTR ERV1 1 295 -492 794 184 93 77 chr5 32538762 32539090 -170546442 + LTR48 LTR ERV1 245 784 -3 489 219 0 0 chr5 32539101 32539215 -170546317 + (CATA)n Simple_repeat Simple_repeat 3 116 0 1439 164 44 25 chr5 32539215 32539522 -170546010 - AluJb SINE Alu 0 316 5 24 0 0 0 chr5 32539536 32539560 -170545972 + AT_rich Low_complexity Low_complexity 1 24 0 844 242 10 10 chr5 32539567 32539765 -170545767 - MER3 DNA MER1_type -3 206 9 398 277 157 6 chr5 32539803 32539962 -170545570 + MER5A DNA MER1_type 7 189 0 3988 175 150 144 chr5 32540843 32540877 -170544655 + L1MC4a LINE L1 5874 5906 -1902 2264 87 6 10 chr5 32540877 32541188 -170544344 + AluSq SINE Alu 2 311 -2 3988 175 150 144 chr5 32541188 32541226 -170544306 + L1MC4a LINE L1 5906 5942 -1866 207 0 0 0 chr5 32541226 32541249 -170544283 + (TGGGGG)n Simple_repeat Simple_repeat 6 28 0 629 188 23 30 chr5 32541253 32541386 -170544146 + FLAM_C SINE Alu 2 133 0 3988 175 150 144 chr5 32541386 32541698 -170543834 + L1MC4a LINE L1 5944 6253 -1555 2417 97 0 0 chr5 32541698 32541997 -170543535 + AluSx SINE Alu 1 299 -13 3988 175 150 144 chr5 32541997 32542229 -170543303 + L1MC4a LINE L1 6253 6482 -1326 809 134 7 78 chr5 32542229 32542315 -170543217 - FLAM_C SINE Alu -180 132 58 4110 105 22 2 chr5 32542315 32542905 -170542627 + LTR43 LTR ERV1 1 602 0 809 134 7 78 chr5 32542905 32542960 -170542572 - FLAM_C SINE Alu -254 58 1 3988 175 150 144 chr5 32542960 32544118 -170541414 + L1MC4a LINE L1 6482 7808 0 1920 53 0 4 chr5 32544341 32544604 -170540928 + AluY SINE Alu 59 320 0 4170 149 75 53 chr5 32544605 32545062 -170540470 + L1MB4 LINE L1 5278 5723 -457 261 0 0 0 chr5 32545062 32545091 -170540441 + (TA)n Simple_repeat Simple_repeat 2 30 0 4170 149 75 53 chr5 32545091 32545245 -170540287 + L1MB4 LINE L1 5723 5872 -308 2537 100 14 14 chr5 32545245 32545606 -170539926 + THE1B LTR MaLR 1 361 -3 4170 149 75 53 chr5 32545606 32545747 -170539785 + L1MB4 LINE L1 5872 6008 -172 2174 126 0 0 chr5 32545747 32546041 -170539491 + AluSx SINE Alu 2 295 -17 4170 149 75 53 chr5 32546041 32546152 -170539380 + L1MB4 LINE L1 6008 6162 -18 705 264 48 9 chr5 32546576 32546803 -170538729 + L1M4 LINE L1 3359 3594 -2552 1078 101 89 0 chr5 32546804 32546962 -170538570 - AluSg/x SINE Alu -4 306 135 976 160 0 0 chr5 32546991 32547141 -170538391 + FRAM SINE Alu 1 150 -16 659 88 29 0 chr5 32547145 32547247 -170538285 + (GGAGAA)n Simple_repeat Simple_repeat 2 106 0 1032 104 0 17 chr5 32547248 32547421 -170538111 + (GAAA)n Simple_repeat Simple_repeat 4 173 0 282 29 0 0 chr5 32547423 32547458 -170538074 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 983 194 26 67 chr5 32547488 32547756 -170537776 + L1M4 LINE L1 3764 4020 -2126 1456 218 24 36 chr5 32547856 32548329 -170537203 - LTR24-int LTR ERV1 -4515 608 1 2736 150 17 28 chr5 32548329 32548471 -170537061 - LTR24 LTR ERV1 0 467 325 2389 76 3 16 chr5 32548471 32548774 -170536758 + AluSc SINE Alu 1 299 -10 2736 150 17 28 chr5 32548774 32549103 -170536429 - LTR24 LTR ERV1 -142 325 1 1388 222 29 110 chr5 32549103 32549437 -170536095 - HAL1 LINE L1 -835 1672 1421 2137 132 0 3 chr5 32549437 32549741 -170535791 - AluJo SINE Alu -9 303 1 1388 222 29 110 chr5 32549741 32550099 -170535433 - HAL1 LINE L1 -1086 1421 1036 311 284 96 76 chr5 32550107 32550144 -170535388 - HAL1 LINE L1 -1674 833 798 2381 70 36 3 chr5 32550144 32550445 -170535087 + AluY SINE Alu 1 311 0 311 284 96 76 chr5 32550445 32550657 -170534875 - HAL1 LINE L1 -1709 798 579 235 267 15 92 chr5 32550692 32550823 -170534709 + HAL1 LINE L1 742 862 -1645 2163 120 0 10 chr5 32551190 32551490 -170534042 - AluSx SINE Alu -11 301 5 317 306 105 8 chr5 32551586 32551739 -170533793 + MIR SINE MIR 49 214 -48 761 289 101 45 chr5 32552057 32552462 -170533070 - LTR33 LTR ERVL 0 521 83 2390 104 3 0 chr5 32552462 32552771 -170532761 + AluSq SINE Alu 2 311 -2 761 289 101 45 chr5 32552771 32552852 -170532680 - LTR33 LTR ERVL -438 83 8 2092 125 17 0 chr5 32554084 32554381 -170531151 + AluSq SINE Alu 1 302 -11 276 296 139 0 chr5 32554646 32554761 -170530771 - MER102b DNA MER1_type -1 340 210 273 302 52 0 chr5 32554797 32554893 -170530639 - MER102b DNA MER1_type -240 101 1 500 209 17 0 chr5 32554902 32555017 -170530515 + MER5B DNA MER1_type 2 118 -60 2473 77 3 0 chr5 32555111 32555409 -170530123 + AluSp SINE Alu 1 299 -14 832 133 126 7 chr5 32555544 32555695 -170529837 - MER3 DNA MER1_type 0 209 41 1834 165 0 46 chr5 32555795 32556122 -170529410 - AluSx SINE Alu 0 312 1 931 172 12 12 chr5 32556207 32556376 -170529156 + FRAM SINE Alu 3 171 -5 2330 94 0 0 chr5 32557220 32557518 -170528014 + AluSx SINE Alu 7 304 -8 2211 114 3 3 chr5 32557867 32558164 -170527368 - AluSx SINE Alu -15 297 1 216 0 0 0 chr5 32558164 32558188 -170527344 + (T)n Simple_repeat Simple_repeat 1 24 0 187 352 65 0 chr5 32558322 32558430 -170527102 - L2 LINE L2 -42 3230 3116 2235 97 3 10 chr5 32559091 32559401 -170526131 + AluSg1 SINE Alu 1 308 -1 2110 137 0 0 chr5 32559462 32559762 -170525770 - AluSx SINE Alu -12 300 1 1022 131 0 0 chr5 32560103 32560256 -170525276 - MER6A DNA MER2_type -1 604 452 1763 186 0 0 chr5 32560256 32560541 -170524991 - AluJb SINE Alu -19 293 9 566 163 0 0 chr5 32560541 32560633 -170524899 - AluJ/FLAM SINE Alu -219 93 2 2653 141 51 0 chr5 32560633 32561067 -170524465 - MER6A DNA MER2_type -149 456 1 2129 133 0 13 chr5 32561138 32561454 -170524078 - AluSx SINE Alu 0 312 1 2354 93 3 3 chr5 32561661 32561963 -170523569 + AluSp SINE Alu 1 302 -11 683 217 49 14 chr5 32562357 32562500 -170523032 + AluJo SINE Alu 4 151 -161 343 89 0 0 chr5 32562500 32562545 -170522987 - Alu SINE Alu -256 45 1 232 278 46 74 chr5 32562550 32562658 -170522874 - MIR SINE MIR -61 147 43 245 264 0 0 chr5 32562868 32562921 -170522611 + L2 LINE L2 3206 3258 -14 1301 150 21 30 chr5 32563764 32563997 -170521535 - AluJo SINE Alu -73 239 9 314 23 23 0 chr5 32564030 32564073 -170521459 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 9328 67 4 9 chr5 32564073 32566041 -170519491 - L1PA6 LINE L1 -24 6130 4170 2555 59 0 7 chr5 32566286 32566592 -170518940 + AluY SINE Alu 1 304 -7 1974 72 0 4 chr5 32567794 32568031 -170517501 + AluSq SINE Alu 2 237 -76 2264 96 0 0 chr5 32568263 32568581 -170516951 - AluSx SINE Alu 0 318 1 1203 249 87 15 chr5 32568987 32569320 -170516212 - LTR16A LTR ERVL -8 442 86 2002 123 0 45 chr5 32569446 32569584 -170515948 + AluSx SINE Alu 1 144 -168 2251 76 59 0 chr5 32569584 32569873 -170515659 + AluSq SINE Alu 3 308 -5 2002 123 0 45 chr5 32569873 32570043 -170515489 + AluSx SINE Alu 144 295 -17 2232 85 7 0 chr5 32570537 32570841 -170514691 + AluSq SINE Alu 1 306 0 2472 204 65 108 chr5 32571545 32571692 -170513840 - L1MC4a LINE L1 0 7808 7656 1240 180 172 8 chr5 32571692 32571948 -170513584 - AluJb SINE Alu -4 298 1 2472 204 65 108 chr5 32571948 32572610 -170512922 - L1MC4a LINE L1 -152 7656 7127 1738 164 33 30 chr5 32572616 32572920 -170512612 - AluJo SINE Alu -7 305 1 712 100 10 270 chr5 32572945 32573070 -170512462 + Charlie5 DNA MER1_type 2403 2480 -144 426 119 0 0 chr5 32573070 32573129 -170512403 + AluJ/FRAM SINE Alu 232 290 -22 712 100 10 270 chr5 32573129 32573245 -170512287 + Charlie5 DNA MER1_type 2480 2624 0 410 250 17 42 chr5 32573257 32573377 -170512155 + MIR SINE MIR 144 260 -2 2305 105 20 0 chr5 32573554 32573860 -170511672 + AluSx SINE Alu 1 312 0 1153 244 8 0 chr5 32574458 32574696 -170510836 - MIR SINE MIR -21 241 2 1075 249 112 27 chr5 32575623 32576061 -170509471 - LTR33 LTR ERVL 0 521 47 591 320 62 89 chr5 32576435 32576636 -170508896 - L2 LINE L2 0 3272 3067 1973 148 3 7 chr5 32576636 32576939 -170508593 + AluJb SINE Alu 1 302 -10 591 320 62 89 chr5 32576939 32576952 -170508580 - L2 LINE L2 -205 3067 3055 1617 166 50 21 chr5 32576952 32577235 -170508297 + AluJo SINE Alu 9 299 -13 2502 81 3 0 chr5 32577237 32577546 -170507986 + AluSp SINE Alu 1 310 -3 591 320 62 89 chr5 32577546 32577975 -170507557 - L2 LINE L2 -218 3054 2659 757 208 13 0 chr5 32578007 32578156 -170507376 - MER58B DNA MER1_type -12 329 179 2133 116 0 0 chr5 32578163 32578478 -170507054 + AluSx SINE Alu 1 315 0 272 317 241 20 chr5 32578571 32578820 -170506712 - L2 LINE L2 -706 2608 2305 726 153 0 0 chr5 32578852 32578963 -170506569 + AluSg/x SINE Alu 193 303 -6 421 327 132 42 chr5 32579000 32579410 -170506122 - L2 LINE L2 -1862 1452 1006 181 324 185 17 chr5 32579416 32579654 -170505878 - L2 LINE L2 -2848 466 189 632 174 76 70 chr5 32580093 32580145 -170505387 - MER96 DNA MER1_type? 0 175 125 1336 136 24 16 chr5 32580145 32580395 -170505137 + L1MA4 LINE L1 6044 6295 -5 632 174 76 70 chr5 32580395 32580514 -170505018 - MER96 DNA MER1_type? -50 125 3 23 0 0 0 chr5 32582245 32582268 -170503264 + AT_rich Low_complexity Low_complexity 1 23 0 2053 153 3 6 chr5 32582268 32582581 -170502951 + AluJb SINE Alu 1 312 0 25 31 0 0 chr5 32582611 32582643 -170502889 + AT_rich Low_complexity Low_complexity 1 32 0 2324 105 0 0 chr5 32583160 32583454 -170502078 - AluSx SINE Alu -18 294 1 2519 87 0 0 chr5 32583932 32584243 -170501289 + AluSq SINE Alu 1 311 -2 245 329 67 20 chr5 32584474 32584623 -170500909 + MER5B DNA MER1_type 23 178 0 2055 144 0 0 chr5 32584652 32584950 -170500582 - AluSx SINE Alu -14 298 1 296 306 90 75 chr5 32585880 32586312 -170499220 - L2 LINE L2 0 3313 2874 184 301 185 34 chr5 32586524 32586670 -170498862 - MIR SINE MIR -1 261 94 23 54 0 0 chr5 32587970 32588007 -170497525 + GC_rich Low_complexity Low_complexity 1 37 0 233 191 0 0 chr5 32588103 32588145 -170497387 + (CGG)n Simple_repeat Simple_repeat 3 44 0 282 164 0 0 chr5 32588852 32588907 -170496625 + CT-rich Low_complexity Low_complexity 3 57 0 1346 177 5 0 chr5 32590384 32590593 -170494939 - AluJb SINE Alu -102 210 1 231 282 109 64 chr5 32591736 32591892 -170493640 + MIR SINE MIR 21 183 -79 1803 104 31 62 chr5 32592632 32592920 -170492612 - AluJb SINE Alu -15 297 19 210 367 109 8 chr5 32593904 32594032 -170491500 - L3b LINE CR1 -3 1580 1440 2382 83 0 3 chr5 32594139 32594439 -170491093 - AluSc SINE Alu -10 299 1 429 281 35 0 chr5 32596028 32596142 -170489390 - MIR SINE MIR -2 260 143 1250 234 105 41 chr5 32596143 32596608 -170488924 - MLT1D LTR MaLR -2 503 9 351 349 31 0 chr5 32596617 32596746 -170488786 - MIR SINE MIR -118 144 12 1236 312 68 11 chr5 32596921 32597466 -170488066 + L2 LINE L2 2125 2700 -614 1572 114 49 92 chr5 32597469 32597837 -170487695 - L1MC1 LINE L1 0 6333 5982 862 158 0 0 chr5 32597848 32597981 -170487551 - FLAM_C SINE Alu 0 133 1 323 279 236 13 chr5 32597981 32598218 -170487314 + L2 LINE L2 2688 2977 -337 185 365 19 10 chr5 32598286 32598390 -170487142 + L2 LINE L2 3139 3243 -70 2348 86 0 17 chr5 32598456 32598758 -170486774 + AluSg SINE Alu 1 297 -13 585 284 0 31 chr5 32599034 32599196 -170486336 - MIR SINE MIR -102 160 4 1708 157 26 0 chr5 32600417 32600592 -170484940 - AluJb SINE Alu 0 309 140 245 27 54 0 chr5 32600592 32600629 -170484903 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1950 135 0 54 chr5 32600629 32600926 -170484606 - AluSg SINE Alu -29 281 1 305 24 24 0 chr5 32600932 32600974 -170484558 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1708 157 26 0 chr5 32600974 32601084 -170484448 - AluJb SINE Alu -173 136 9 2271 118 0 10 chr5 32601528 32601842 -170483690 + AluSx SINE Alu 1 311 -1 331 297 51 8 chr5 32602059 32602177 -170483355 + L2 LINE L2 3189 3311 -2 186 149 0 106 chr5 32602492 32602539 -170482993 - L2 LINE L2 0 3313 3272 2272 86 0 0 chr5 32602582 32602887 -170482645 - AluY SINE Alu 0 305 1 1596 250 213 37 chr5 32602940 32603966 -170481566 + L2 LINE L2 1859 3150 -163 2434 88 3 3 chr5 32603966 32604274 -170481258 - AluSg SINE Alu -2 308 1 1596 250 213 37 chr5 32604274 32604473 -170481059 + L2 LINE L2 3150 3313 0 508 238 98 28 chr5 32604471 32604614 -170480918 - MER5B DNA MER1_type -25 153 1 * 190 389 14 29 chr5 32604982 32605121 -170480411 + L2 LINE L2 2929 3065 -207 1237 328 88 32 chr5 32605965 32606684 -170478848 + L3 LINE CR1 381 1139 -438 243 344 123 53 chr5 32606707 32607420 -170478112 + L2 LINE L2 1007 1669 -1645 2442 80 0 3 chr5 32607420 32607722 -170477810 - AluSg SINE Alu -9 301 1 243 344 123 53 chr5 32607722 32608388 -170477144 + L2 LINE L2 1669 2482 -832 434 321 56 19 chr5 32608432 32608647 -170476885 + L3 LINE CR1 1254 1476 -101 261 279 96 59 chr5 32608769 32608905 -170476627 - MIR SINE MIR -109 153 13 25 0 0 0 chr5 32609134 32609159 -170476373 + AT_rich Low_complexity Low_complexity 1 25 0 1483 184 53 28 chr5 32609159 32609177 -170476355 - AluJo SINE Alu -23 289 273 2807 93 3 8 chr5 32609177 32609554 -170475978 - THE1C LTR MaLR 0 375 1 1483 184 53 28 chr5 32609554 32609699 -170475833 - AluJo SINE Alu -39 273 114 189 0 0 0 chr5 32609699 32609720 -170475812 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1483 184 53 28 chr5 32609720 32609837 -170475695 - AluJo SINE Alu -198 114 1 186 43 0 0 chr5 32610589 32610612 -170474920 + (T)n Simple_repeat Simple_repeat 1 23 0 270 345 0 61 chr5 32610683 32610831 -170474701 + MIR3 SINE MIR 35 173 -35 2111 131 0 0 chr5 32610831 32611136 -170474396 + AluSq SINE Alu 1 305 0 933 227 9 40 chr5 32611213 32611438 -170474094 - MLT1A1 LTR MaLR 0 365 148 2403 72 0 3 chr5 32611439 32611732 -170473800 - AluY SINE Alu -19 292 1 429 167 0 94 chr5 32611732 32611828 -170473704 - MLT1A1 LTR MaLR -287 87 1 361 311 66 9 chr5 32612048 32612154 -170473378 - MIR3 SINE MIR -36 172 79 204 40 0 0 chr5 32612657 32612682 -170472850 + (TG)n Simple_repeat Simple_repeat 1 25 0 732 185 0 8 chr5 32612965 32613104 -170472428 - FLAM_A SINE Alu 0 138 1 256 279 15 0 chr5 32613107 32613175 -170472357 - MLT1J2 LTR MaLR -37 413 345 483 215 0 0 chr5 32613219 32613340 -170472192 + (CA)n Simple_repeat Simple_repeat 1 121 0 407 239 11 0 chr5 32613570 32613658 -170471874 - MLT1J2 LTR MaLR -121 329 241 276 298 12 0 chr5 32613732 32613816 -170471716 - MLT1J LTR MaLR -324 187 103 184 274 57 89 chr5 32614065 32614189 -170471343 + L2 LINE L2 2933 3052 -220 1886 163 41 24 chr5 32614267 32614636 -170470896 + THE1C LTR MaLR 1 375 0 704 252 36 104 chr5 32615717 32615761 -170469771 - L2 LINE L2 0 3313 3268 2682 50 0 0 chr5 32615761 32616064 -170469468 + AluY SINE Alu 1 303 -8 704 252 36 104 chr5 32616064 32616440 -170469092 - L2 LINE L2 -45 3268 2922 2357 109 0 3 chr5 32616656 32616967 -170468565 - AluSg SINE Alu 0 310 1 321 141 77 67 chr5 32617807 32617934 -170467598 + MER20 DNA MER1_type 5 179 -40 1805 152 34 7 chr5 32617934 32618231 -170467301 + AluJo SINE Alu 1 305 -7 321 141 77 67 chr5 32618231 32618273 -170467259 + MER20 DNA MER1_type 179 219 0 195 42 0 0 chr5 32618661 32618685 -170466847 + (TAA)n Simple_repeat Simple_repeat 2 25 0 579 245 20 26 chr5 32618691 32618842 -170466690 - MIR SINE MIR -10 252 103 2316 49 0 21 chr5 32619214 32619525 -170466007 - AluSg SINE Alu 0 305 1 602 290 96 32 chr5 32619525 32619839 -170465693 - LTR16C LTR ERVL -6 485 152 255 341 18 90 chr5 32619930 32620097 -170465435 - L2 LINE L2 -94 3178 3024 208 192 39 19 chr5 32620428 32620480 -170465052 + MIR SINE MIR 81 133 -75 475 255 31 19 chr5 32620548 32620709 -170464823 - MER5A DNA MER1_type -18 171 9 919 215 63 5 chr5 32620766 32620971 -170464561 - MER20 DNA MER1_type -2 217 1 491 302 151 0 chr5 32620991 32621150 -170464382 - MER5A DNA MER1_type -3 186 4 1523 183 70 45 chr5 32622338 32622493 -170463039 + MLT1A1 LTR MaLR 1 151 -214 2409 94 0 0 chr5 32622493 32622790 -170462742 + AluSx SINE Alu 1 297 -15 1523 183 70 45 chr5 32622790 32622990 -170462542 + MLT1A1 LTR MaLR 151 365 0 192 352 32 24 chr5 32623573 32623698 -170461834 - MIR SINE MIR -29 233 108 1774 176 0 16 chr5 32624496 32624802 -170460730 - AluJb SINE Alu -11 301 1 228 143 0 0 chr5 32624957 32624999 -170460533 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 2176 94 47 3 chr5 32625358 32625657 -170459875 - AluSx SINE Alu 0 312 1 938 224 9 85 chr5 32626129 32626460 -170459072 + L1ME1 LINE L1 5777 6082 -84 299 203 0 192 chr5 32626403 32626585 -170458947 + L1MA10 LINE L1 6185 6331 -3 * 1844 157 31 0 chr5 32627103 32627389 -170458143 - AluJb SINE Alu -17 295 1 243 103 0 0 chr5 32627941 32627980 -170457552 + (TTGTG)n Simple_repeat Simple_repeat 3 41 0 2118 131 6 10 chr5 32627985 32628298 -170457234 - AluSx SINE Alu 0 312 1 2085 141 0 3 chr5 32629724 32630022 -170455510 - AluSx SINE Alu -2 310 14 261 222 44 11 chr5 32630022 32630112 -170455420 + (TA)n Simple_repeat Simple_repeat 2 94 0 263 311 58 0 chr5 32630541 32630644 -170454888 + L3b LINE CR1 1143 1251 -332 279 0 0 0 chr5 32631159 32631190 -170454342 + (TG)n Simple_repeat Simple_repeat 2 32 0 249 108 0 0 chr5 32631677 32631714 -170453818 + (A)n Simple_repeat Simple_repeat 1 37 0 864 308 44 15 chr5 32632049 32632461 -170453071 - L1MC4a LINE L1 -1913 5895 5472 1101 326 106 36 chr5 32632624 32633287 -170452245 + L2 LINE L2 2267 2975 -339 243 273 39 39 chr5 32633426 32633503 -170452029 + L2 LINE L2 3169 3245 -27 235 276 130 55 chr5 32633504 32633758 -170451774 - L1MC4a LINE L1 -1311 4835 4563 478 258 61 49 chr5 32633853 32633988 -170451544 - L1MC5 LINE L1 -36 7925 7793 1951 162 10 0 chr5 32633988 32634291 -170451241 - AluJb SINE Alu -6 306 1 478 258 61 49 chr5 32634291 32634389 -170451143 - L1MC5 LINE L1 -168 7793 7686 2054 89 6 85 chr5 32634389 32634705 -170450827 + AluSg SINE Alu 1 291 -19 478 258 61 49 chr5 32634705 32634734 -170450798 - L1MC5 LINE L1 -275 7686 7659 21 0 0 0 chr5 32634810 32634831 -170450701 + AT_rich Low_complexity Low_complexity 1 21 0 2278 105 3 10 chr5 32634832 32635137 -170450395 - AluSx SINE Alu -9 303 1 368 233 67 60 chr5 32635195 32635345 -170450187 - L1 LINE L1 -1731 4415 4265 227 98 73 0 chr5 32635734 32635775 -170449757 - MLT1B-int LTR MaLR -973 398 355 977 158 395 12 chr5 32635825 32636076 -170449456 - MLT1B-int LTR MaLR -1172 199 1 1302 201 105 30 chr5 32636076 32636439 -170449093 - MLT1B LTR MaLR 0 390 1 1008 247 53 19 chr5 32636455 32636775 -170448757 - MER46C DNA MER2_type -6 332 2 1091 162 0 32 chr5 32637519 32637704 -170447828 - AluSq SINE Alu -1 312 134 228 35 0 0 chr5 32637704 32637733 -170447799 + (TG)n Simple_repeat Simple_repeat 2 30 0 418 230 19 19 chr5 32637735 32637842 -170447690 - L1MC4 LINE L1 -1339 6983 1977 977 106 8 0 chr5 32637842 32637974 -170447558 - AluSq SINE Alu -179 133 1 958 239 138 52 chr5 32638886 32639350 -170446182 - MLT1D LTR MaLR -1 504 1 189 74 0 0 chr5 32639367 32639394 -170446138 + (ATG)n Simple_repeat Simple_repeat 1 27 0 4528 139 239 92 chr5 32639501 32640980 -170444552 - pTR5 LTR ERV1 0 2438 743 2435 96 0 0 chr5 32641693 32641994 -170443538 - AluSg SINE Alu -9 301 1 383 324 35 18 chr5 32642240 32642425 -170443107 + MIR SINE MIR 30 212 -50 2198 106 33 3 chr5 32642573 32642874 -170442658 + AluSx SINE Alu 1 310 -2 184 30 61 0 chr5 32643230 32643263 -170442269 + T-rich Low_complexity Low_complexity 2 36 0 465 28 0 83 chr5 32643264 32643298 -170442234 - MER41B LTR ERV1 -90 545 518 2402 107 0 0 chr5 32643298 32643607 -170441925 + AluSx SINE Alu 1 309 -3 465 28 0 83 chr5 32643607 32643644 -170441888 - MER41B LTR ERV1 -117 518 480 819 242 51 57 chr5 32643749 32644084 -170441448 + MER96B DNA MER1_type? 49 381 -36 234 91 0 0 chr5 32644669 32644702 -170440830 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 1641 145 30 34 chr5 32644760 32645057 -170440475 - AluJo SINE Alu -16 296 1 398 226 49 85 chr5 32645581 32645636 -170439896 - L1ME4a LINE L1 -4 6117 6062 2313 119 0 0 chr5 32645636 32645946 -170439586 + AluSx SINE Alu 1 310 -2 398 226 49 85 chr5 32645946 32646054 -170439478 - L1ME4a LINE L1 -59 6062 5960 2210 84 14 20 chr5 32646330 32646648 -170438884 - AluSc SINE Alu 0 309 1 2581 45 3 10 chr5 32646758 32647067 -170438465 + AluY SINE Alu 1 307 -4 535 262 41 77 chr5 32647081 32647302 -170438230 - MIR SINE MIR -21 241 29 197 314 57 138 chr5 32647487 32647783 -170437749 - L2 LINE L2 -1 3271 3000 927 110 0 0 chr5 32647909 32648027 -170437505 + AluJb SINE Alu 1 118 -194 1421 121 138 104 chr5 32648036 32648334 -170437198 - AluSg SINE Alu -2 308 1 265 359 8 26 chr5 32649029 32649146 -170436386 - MIR SINE MIR -85 177 63 440 272 9 9 chr5 32649189 32649303 -170436229 - MER81 DNA DNA 0 114 1 201 314 0 0 chr5 32649550 32649601 -170435931 + L2 LINE L2 3262 3312 -1 1697 175 21 7 chr5 32649651 32649937 -170435595 - AluSx SINE Alu -22 290 1 329 333 115 16 chr5 32650627 32650810 -170434722 - MIR SINE MIR -15 247 47 190 213 0 64 chr5 32650849 32650896 -170434636 - MIR3 SINE MIR -34 174 131 3476 55 7 0 chr5 32651660 32652097 -170433435 + L1PA8 LINE L1 5732 6171 -1 464 86 14 0 chr5 32652358 32652428 -170433104 + (TC)n Simple_repeat Simple_repeat 1 71 0 1769 199 24 0 chr5 32652460 32652757 -170432775 - AluJb SINE Alu -8 304 1 326 316 80 38 chr5 32652760 32653048 -170432484 - L1ME4a LINE L1 -117 6004 5705 2170 128 0 0 chr5 32653323 32653611 -170431921 + AluSx SINE Alu 1 288 -24 276 53 0 0 chr5 32653620 32653658 -170431874 + (CA)n Simple_repeat Simple_repeat 2 39 0 185 304 152 0 chr5 32653904 32653983 -170431549 - MIR SINE MIR -6 256 166 2151 116 0 7 chr5 32654198 32654492 -170431040 + AluSx SINE Alu 1 292 -20 479 268 31 16 chr5 32654494 32654621 -170430911 + L2 LINE L2 3185 3313 0 2411 89 0 0 chr5 32654994 32655285 -170430247 + AluSc SINE Alu 1 291 -18 1041 208 78 93 chr5 32655321 32655478 -170430054 + MLT1B LTR MaLR 1 159 -269 2118 43 0 4 chr5 32655478 32655722 -170429810 + L1PA5 LINE L1 5893 6137 -17 192 111 0 0 chr5 32655722 32655758 -170429774 + (TTAA)n Simple_repeat Simple_repeat 1 36 0 2118 43 0 4 chr5 32655758 32655769 -170429763 + L1PA5 LINE L1 6137 6147 -7 1041 208 78 93 chr5 32655769 32656004 -170429528 + MLT1B LTR MaLR 159 428 0 1871 146 17 3 chr5 32656061 32656348 -170429184 - AluJo SINE Alu -21 291 1 293 270 157 0 chr5 32657033 32657122 -170428410 - MER91C DNA MER1_type -2 138 36 2426 97 0 0 chr5 32657297 32657606 -170427926 - AluSg SINE Alu -1 309 1 1608 150 26 11 chr5 32657657 32657924 -170427608 + AluJo SINE Alu 33 303 -9 2325 105 0 0 chr5 32658094 32658388 -170427144 + AluSx SINE Alu 1 294 -18 660 254 35 69 chr5 32658831 32658956 -170426576 + MIR SINE MIR 22 137 -125 2353 97 7 0 chr5 32658956 32659254 -170426278 + AluSq SINE Alu 1 300 -13 660 254 35 69 chr5 32659254 32659360 -170426172 + MIR SINE MIR 137 245 -17 383 243 59 66 chr5 32659968 32660120 -170425412 + MIR3 SINE MIR 4 154 -54 585 252 78 139 chr5 32660605 32661160 -170424372 - MLT1H1 LTR MaLR -2 553 33 285 293 146 0 chr5 32661404 32661527 -170424005 + MER117 DNA MER1_type 27 167 -30 1068 170 55 0 chr5 32661879 32662079 -170423453 + MSTB1 LTR MaLR 1 211 -221 1370 117 6 0 chr5 32662079 32662259 -170423273 - AluSx SINE Alu -131 181 1 1084 134 6 0 chr5 32662260 32662431 -170423101 + MSTB1 LTR MaLR 259 430 -2 2413 94 0 3 chr5 32663189 32663498 -170422034 + AluY SINE Alu 1 308 -3 2131 178 43 84 chr5 32664665 32664932 -170420600 - MER74A LTR ERVL 0 558 281 2203 122 0 0 chr5 32664932 32665235 -170420297 + AluSx SINE Alu 1 303 -9 2131 178 43 84 chr5 32665235 32665547 -170419985 - MER74A LTR ERVL -277 281 3 205 288 27 41 chr5 32665740 32665813 -170419719 - L2 LINE L2 -89 3183 3112 2155 138 7 54 chr5 32666829 32667105 -170418427 - MLT1B LTR MaLR -4 386 133 2266 115 3 0 chr5 32667105 32667409 -170418123 - AluY SINE Alu -6 305 1 2155 138 7 54 chr5 32667409 32667537 -170417995 - MLT1B LTR MaLR -257 133 1 262 343 46 0 chr5 32668168 32668276 -170417256 - L2 LINE L2 -2 3270 3158 301 240 13 0 chr5 32668278 32668353 -170417179 - LTR67 LTR ERVL -2 555 480 235 208 28 28 chr5 32668568 32668640 -170416892 - MLT1J LTR MaLR -330 181 110 * 606 258 36 18 chr5 32668581 32668748 -170416784 - LTR67 LTR ERVL -385 172 3 3462 130 36 34 chr5 32668853 32669492 -170416040 - MER39B LTR ERV1 -13 640 1 249 169 13 78 chr5 32669518 32669595 -170415937 - L2 LINE L2 -207 3065 2994 189 0 0 0 chr5 32669926 32669947 -170415585 + (T)n Simple_repeat Simple_repeat 1 21 0 598 276 232 28 chr5 32670287 32670795 -170414737 + L2 LINE L2 2366 2977 -337 2247 108 6 16 chr5 32671084 32671399 -170414133 - AluSx SINE Alu 0 312 1 2385 77 0 0 chr5 32672012 32672330 -170413202 - AluSq SINE Alu 0 318 1 2565 72 3 0 chr5 32672733 32673038 -170412494 + AluSp SINE Alu 1 306 -7 2342 103 0 22 chr5 32673460 32673771 -170411761 + AluSp SINE Alu 1 304 -9 330 287 96 30 chr5 32674419 32674586 -170410946 + MIR3 SINE MIR 4 181 -27 2248 116 0 0 chr5 32674659 32674951 -170410581 + AluSq SINE Alu 1 292 -21 2316 150 57 15 chr5 32675218 32675625 -170409907 - MSTA LTR MaLR 0 428 5 2280 74 30 10 chr5 32675837 32676134 -170409398 + AluSq SINE Alu 1 303 -10 2379 76 3 7 chr5 32676134 32676437 -170409095 + AluY SINE Alu 1 302 -9 627 172 73 104 chr5 32676530 32676722 -170408810 - MER20 DNA MER1_type -14 205 20 874 139 7 40 chr5 32677260 32677433 -170408099 - AluSg/x SINE Alu 0 302 135 2467 74 23 0 chr5 32677515 32677814 -170407718 - AluSq SINE Alu -7 306 1 398 336 32 23 chr5 32677827 32678002 -170407530 - MIR SINE MIR -63 145 16 2248 103 0 0 chr5 32678231 32678545 -170406987 - AluSx SINE Alu 0 314 1 464 0 18 0 chr5 32678972 32679028 -170406504 + (TG)n Simple_repeat Simple_repeat 2 58 0 2437 176 55 61 chr5 32679744 32680362 -170405170 - L1MB5 LINE L1 0 6174 5556 443 358 16 21 chr5 32680398 32680585 -170404947 - L3 LINE CR1 -2 1575 1390 2302 121 0 0 chr5 32681141 32681446 -170404086 - AluSx SINE Alu -7 305 1 266 122 20 0 chr5 32681465 32681514 -170404018 - L1ME3A LINE L1 -5 6165 6116 * 621 229 51 11 chr5 32681495 32681670 -170403862 + L1ME3A LINE L1 5878 6059 -111 629 293 167 4 chr5 32681842 32682112 -170403420 + MLT1K LTR MaLR 82 395 -193 3673 189 50 50 chr5 32682198 32682730 -170402802 - MER21B LTR ERV1 -14 849 315 2315 111 3 0 chr5 32682730 32683036 -170402496 - AluSx SINE Alu -5 307 1 3673 189 50 50 chr5 32683036 32683352 -170402180 - MER21B LTR ERV1 -547 316 1 1149 79 0 7 chr5 32683934 32684074 -170401458 + AluSq/x SINE Alu 1 139 -174 2344 96 0 3 chr5 32684084 32684387 -170401145 + AluSc SINE Alu 3 304 -5 2481 130 61 30 chr5 32685126 32685533 -170399999 + MSTB LTR MaLR 5 424 -2 2650 46 7 0 chr5 32685597 32685903 -170399629 - AluY SINE Alu -3 308 1 607 279 34 17 chr5 32686239 32686418 -170399114 - MIR SINE MIR 0 262 81 231 36 0 0 chr5 32687144 32687172 -170398360 + (AAATG)n Simple_repeat Simple_repeat 3 30 0 2276 108 0 0 chr5 32687322 32687617 -170397915 - AluSx SINE Alu -17 295 1 451 301 72 28 chr5 32687633 32687957 -170397575 + L1ME4a LINE L1 5543 5886 -235 8214 113 22 17 chr5 32687957 32688662 -170396870 - HSMAR2 DNA Mariner -1 1301 586 2631 57 0 16 chr5 32688662 32688978 -170396554 + AluY SINE Alu 1 311 0 8214 113 22 17 chr5 32688978 32689567 -170395965 - HSMAR2 DNA Mariner -716 586 1 451 301 72 28 chr5 32689567 32689601 -170395931 + L1ME4a LINE L1 5886 5917 -204 252 0 0 0 chr5 32689616 32689644 -170395888 + (CA)n Simple_repeat Simple_repeat 2 29 0 334 253 40 10 chr5 32689678 32689777 -170395755 + HAL1b LINE L1 1243 1344 -4 21 0 0 0 chr5 32689783 32689804 -170395728 + AT_rich Low_complexity Low_complexity 1 21 0 256 245 104 28 chr5 32689952 32690058 -170395474 + MIR SINE MIR 19 132 -130 514 262 33 86 chr5 32691006 32691250 -170394282 + MIR SINE MIR 11 241 -21 1875 134 62 7 chr5 32691595 32691885 -170393647 - AluJb SINE Alu -6 306 1 208 294 0 0 chr5 32692099 32692150 -170393382 + (TCCA)n Simple_repeat Simple_repeat 2 52 0 2336 70 0 11 chr5 32693216 32693540 -170391992 + AluY SINE Alu 1 321 0 300 295 70 23 chr5 32693621 32693750 -170391782 - L1ME4a LINE L1 -3 6118 5984 456 220 0 11 chr5 32693782 32693873 -170391659 + L2 LINE L2 3224 3313 0 363 304 51 0 chr5 32694759 32694897 -170390635 + MER117 DNA MER1_type 53 197 0 1129 191 29 100 chr5 32695199 32695322 -170390210 - MER39 LTR ERV1 -3 704 574 2223 93 7 7 chr5 32695322 32695612 -170389920 + AluSg SINE Alu 2 291 -19 1129 191 29 100 chr5 32695612 32695865 -170389667 - MER39 LTR ERV1 -133 574 161 399 217 85 47 chr5 32696707 32696836 -170388696 + MIR SINE MIR 16 149 -59 2398 91 0 0 chr5 32697850 32698148 -170387384 - AluSg SINE Alu -12 298 1 795 261 111 110 chr5 32698805 32699387 -170386145 - L2 LINE L2 -1 3312 2711 2217 114 7 0 chr5 32699387 32699684 -170385848 + AluSq SINE Alu 1 299 -14 795 261 111 110 chr5 32699684 32699974 -170385558 - L2 LINE L2 -602 2711 2423 1724 154 0 97 chr5 32700496 32700693 -170384839 - AluJo SINE Alu -7 305 151 2267 117 3 0 chr5 32700693 32701002 -170384530 + AluSq SINE Alu 1 310 -3 1724 154 0 97 chr5 32701002 32701135 -170384397 - AluJo SINE Alu -161 151 7 188 311 16 0 chr5 32701391 32701452 -170384080 + L2 LINE L2 3247 3308 -5 1590 142 13 4 chr5 32701800 32702064 -170383468 + AluSx SINE Alu 54 319 0 259 272 22 11 chr5 32702089 32702181 -170383351 - Charlie8 DNA MER1_type -2238 179 87 393 383 6 23 chr5 32703085 32703260 -170382272 + MIR3 SINE MIR 14 185 -23 216 340 0 0 chr5 32704754 32704807 -170380725 + L2 LINE L2 3162 3214 -58 1821 172 3 16 chr5 32705428 32705736 -170379796 + AluJo SINE Alu 1 304 -8 2386 80 0 3 chr5 32705736 32706035 -170379497 + AluY SINE Alu 1 298 -13 225 333 123 0 chr5 32706588 32706702 -170378830 + L2 LINE L2 3145 3272 0 2196 92 23 33 chr5 32707968 32708272 -170377260 - AluSx SINE Alu -11 301 1 183 273 146 0 chr5 32708674 32708729 -170376803 - L2 LINE L2 -37 3276 3214 326 250 111 9 chr5 32708957 32709065 -170376467 + L2 LINE L2 3189 3307 -6 2055 150 3 6 chr5 32709067 32709380 -170376152 + AluSx SINE Alu 1 312 0 2498 121 68 34 chr5 32709932 32710006 -170375526 - MSTA LTR MaLR 0 428 358 2242 125 0 0 chr5 32710006 32710303 -170375229 + AluSx SINE Alu 1 297 -15 2498 121 68 34 chr5 32710303 32710642 -170374890 - MSTA LTR MaLR -70 358 1 1112 436 21 14 chr5 32710700 32711008 -170374524 - AluSp SINE Alu 0 311 2 510 261 56 0 chr5 32712030 32712191 -170373341 + L1M3d LINE L1 3 172 -5719 21 0 0 0 chr5 32712289 32712310 -170373222 + AT_rich Low_complexity Low_complexity 1 21 0 2240 123 0 0 chr5 32713240 32713541 -170371991 + AluSx SINE Alu 1 301 -11 1980 157 0 26 chr5 32714334 32714646 -170370886 + AluJb SINE Alu 1 304 -8 1718 171 0 38 chr5 32714821 32715136 -170370396 - AluJb SINE Alu -9 303 1 2147 98 17 7 chr5 32715177 32715472 -170370060 - AluSq SINE Alu -15 298 1 2295 99 0 10 chr5 32715472 32715776 -170369756 - AluSx SINE Alu -11 301 1 181 242 22 77 chr5 32716002 32716093 -170369439 + MER5C DNA MER1_type 174 259 -65 2344 101 3 3 chr5 32716805 32717103 -170368429 + AluSg SINE Alu 1 298 -12 269 290 140 11 chr5 32720254 32720347 -170365185 + MIR3 SINE MIR 58 162 -46 2874 138 74 8 chr5 32720500 32721014 -170364518 + LTR10A LTR ERV1 8 555 -54 1854 149 3 40 chr5 32721803 32722099 -170363433 + AluSx SINE Alu 4 288 -24 401 290 85 25 chr5 32722158 32722349 -170363183 + MIR SINE MIR 6 215 -47 332 259 104 94 chr5 32722808 32722875 -170362657 - L1ME4a LINE L1 -11 6110 6045 2220 115 0 16 chr5 32722875 32723187 -170362345 + AluSq SINE Alu 1 307 -6 332 259 104 94 chr5 32723187 32723320 -170362212 - L1ME4a LINE L1 -76 6045 5908 712 232 57 31 chr5 32723323 32723517 -170362015 + MER63A DNA MER1_type 4 202 -8 378 0 0 0 chr5 32724108 32724150 -170361382 + (TG)n Simple_repeat Simple_repeat 2 43 0 321 284 25 90 chr5 32725128 32725329 -170360203 + L2 LINE L2 2457 2644 -670 858 107 23 46 chr5 32725388 32725400 -170360132 - AluSg SINE Alu -182 128 117 402 21 0 0 chr5 32725400 32725447 -170360085 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 858 107 23 46 chr5 32725447 32725565 -170359967 - AluSg SINE Alu -193 117 1 362 0 20 20 chr5 32725565 32725615 -170359917 + (TTTA)n Simple_repeat Simple_repeat 2 124 0 1691 136 0 45 chr5 32725615 32725880 -170359652 - AluSx SINE Alu -29 283 31 5104 131 132 99 chr5 32725880 32727698 -170357834 + pTR5 LTR ERV1 743 2438 0 266 88 0 0 chr5 32727701 32727735 -170357797 - AluSx SINE Alu -265 34 1 2447 40 7 0 chr5 32728325 32728624 -170356908 - AluY SINE Alu -10 301 1 266 354 53 35 chr5 32728628 32728741 -170356791 + L2 LINE L2 3154 3268 -4 403 269 86 30 chr5 32729784 32729981 -170355551 - MLT1L LTR MaLR -234 381 174 2179 122 0 0 chr5 32730083 32730394 -170355138 + AluSx SINE Alu 1 311 -1 754 119 23 160 chr5 32731139 32731358 -170354174 - MER53 DNA DNA 0 189 1 304 250 50 100 chr5 32731474 32731654 -170353878 + MER5A DNA MER1_type 18 188 -1 2191 111 0 0 chr5 32731659 32731965 -170353567 - AluSx SINE Alu -6 306 1 234 94 0 0 chr5 32732087 32732119 -170353413 + L2 LINE L2 3282 3313 0 2344 75 0 0 chr5 32733578 32733870 -170351662 + AluSg SINE Alu 1 292 -18 329 224 20 61 chr5 32734304 32734402 -170351130 - L1MC4 LINE L1 -1339 6703 6610 1667 164 0 7 chr5 32734406 32734692 -170350840 - AluJo SINE Alu -28 284 1 555 207 95 0 chr5 32735634 32735750 -170349782 - MIR3 SINE MIR -16 192 66 325 253 13 13 chr5 32736633 32736712 -170348820 + MIR3 SINE MIR 121 199 -9 2200 105 0 0 chr5 32737040 32737335 -170348197 + AluSq SINE Alu 1 295 -18 2189 57 7 4 chr5 32737335 32737644 -170347888 + AluY SINE Alu 1 310 0 506 236 117 32 chr5 32737966 32738366 -170347166 - MLT1J LTR MaLR -4 507 1 1970 107 38 0 chr5 32738596 32738885 -170346647 + AluSq SINE Alu 1 300 -13 1970 78 37 7 chr5 32739058 32739348 -170346184 - AluSc SINE Alu 0 298 1 2436 72 0 0 chr5 32739641 32739947 -170345585 - AluY SINE Alu -5 306 1 2367 69 3 16 chr5 32740258 32740575 -170344957 + AluSp SINE Alu 1 313 0 308 257 0 14 chr5 32740962 32741036 -170344496 - MLT1J LTR MaLR -324 187 115 420 260 10 106 chr5 32741240 32741367 -170344165 + MIR SINE MIR 3 100 -162 1971 126 7 3 chr5 32741367 32741668 -170343864 - AluSx SINE Alu -10 302 1 420 260 10 106 chr5 32741668 32741773 -170343759 + MIR SINE MIR 100 213 -49 29 0 0 0 chr5 32741773 32741802 -170343730 + AT_rich Low_complexity Low_complexity 1 29 0 2029 87 3 11 chr5 32741802 32742089 -170343443 - AluSx SINE Alu -27 285 1 184 294 20 0 chr5 32742101 32742152 -170343380 + MIR SINE MIR 211 262 0 557 255 50 6 chr5 32742261 32742422 -170343110 + L2 LINE L2 2849 3016 -297 1988 105 11 3 chr5 32742475 32742761 -170342771 + AluSx SINE Alu 1 288 -24 367 242 248 38 chr5 32743152 32743309 -170342223 + L2 LINE L2 3124 3313 0 2177 81 0 31 chr5 32743336 32743657 -170341875 - AluY SINE Alu 0 311 1 238 83 0 0 chr5 32743690 32743726 -170341806 - L1MA3 LINE L1 0 6305 6270 704 188 12 69 chr5 32744089 32744249 -170341283 - MER106B DNA MER1_type -908 151 1 397 286 97 7 chr5 32745599 32745753 -170339779 + L2 LINE L2 3145 3312 -1 2312 58 0 49 chr5 32745866 32746193 -170339339 - AluY SINE Alu 0 311 1 213 303 15 0 chr5 32746302 32746368 -170339164 - L2 LINE L2 -21 3251 3185 244 121 0 0 chr5 32746369 32746402 -170339130 + Alu SINE Alu 83 115 -188 1257 90 0 0 chr5 32746416 32746583 -170338949 - AluSg SINE Alu -143 167 1 200 250 0 21 chr5 32746967 32747015 -170338517 - L2 LINE L2 -8 3264 3218 187 344 31 42 chr5 32747119 32747215 -170338317 - L2 LINE L2 -191 3081 2987 3038 177 62 7 chr5 32749095 32749660 -170335872 - MER77 LTR ERV1 -9 596 1 700 285 75 11 chr5 32749803 32750070 -170335462 - LTR33 LTR ERVL -237 284 1 486 278 117 29 chr5 32750549 32750754 -170334778 + MIR SINE MIR 13 235 -27 233 288 38 12 chr5 32751071 32751151 -170334381 + MIR SINE MIR 20 101 -107 220 292 45 11 chr5 32751269 32751358 -170334174 - MIR SINE MIR -86 122 31 2051 198 47 72 chr5 32751533 32751591 -170333941 - MER74B LTR ERVL 0 622 564 2461 53 0 0 chr5 32751591 32751894 -170333638 + AluY SINE Alu 1 303 -8 2051 198 47 72 chr5 32751894 32752035 -170333497 - MER74B LTR ERVL -58 564 421 1455 184 0 24 chr5 32752035 32752351 -170333181 - AluJo SINE Alu 0 313 5 2051 198 47 72 chr5 32752351 32752710 -170332822 - MER74B LTR ERVL -201 421 74 1732 145 16 39 chr5 32752710 32753021 -170332511 + AluJo SINE Alu 5 308 -4 364 267 38 29 chr5 32753495 32753600 -170331932 - MIR SINE MIR -153 109 4 1683 141 0 42 chr5 32753864 32754177 -170331355 + AluSx SINE Alu 1 300 -12 1844 174 140 17 chr5 32754635 32755049 -170330483 + MLT1C LTR MaLR 1 465 -2 2312 97 0 3 chr5 32755889 32756197 -170329335 - AluSq SINE Alu -6 307 1 220 294 59 24 chr5 32756333 32756418 -170329114 + MIR SINE MIR 156 243 -19 317 363 44 25 chr5 32757472 32757632 -170327900 - MIR3 SINE MIR -27 181 19 2149 101 3 10 chr5 32757656 32757962 -170327570 + AluSx SINE Alu 1 304 -8 2256 73 0 10 chr5 32759225 32759526 -170326006 - AluY SINE Alu -13 298 1 1354 139 33 37 chr5 32759937 32760210 -170325322 - AluSx SINE Alu -23 289 18 2082 113 0 0 chr5 32760632 32760963 -170324569 + AluSx SINE Alu 1 331 0 506 279 8 0 chr5 32761226 32761355 -170324177 + Charlie7 DNA MER1_type 116 245 -2367 813 183 0 0 chr5 32761396 32761527 -170324005 - AluJo SINE Alu -45 267 137 2070 245 84 52 chr5 32761559 32761669 -170323863 + Charlie7 DNA MER1_type 307 412 -2200 718 176 0 22 chr5 32761669 32761805 -170323727 - AluJo SINE Alu -169 133 1 2070 245 84 52 chr5 32761805 32762093 -170323439 + Charlie7 DNA MER1_type 412 689 -1923 2501 55 0 0 chr5 32762093 32762400 -170323132 + AluY SINE Alu 1 307 -4 2070 245 84 52 chr5 32762400 32762811 -170322721 + Charlie7 DNA MER1_type 689 1143 -1469 772 154 0 0 chr5 32762811 32762928 -170322604 + AluJb SINE Alu 2 118 -194 22 35 0 0 chr5 32762941 32762970 -170322562 + AT_rich Low_complexity Low_complexity 1 29 0 2202 228 94 75 chr5 32762973 32763193 -170322339 + Charlie7 DNA MER1_type 1128 1343 -1269 5014 131 65 43 chr5 32763193 32763476 -170322056 - MER4D LTR ERV1 0 903 628 1864 126 24 0 chr5 32763476 32763769 -170321763 + AluSx SINE Alu 12 311 -1 5014 131 65 43 chr5 32763769 32763885 -170321647 - MER4D LTR ERV1 -275 628 516 2177 118 0 6 chr5 32763885 32764198 -170321334 + AluSq SINE Alu 1 311 -2 5014 131 65 43 chr5 32764198 32764681 -170320851 - MER4D LTR ERV1 -387 516 1 2202 228 94 75 chr5 32764681 32764931 -170320601 + Charlie7 DNA MER1_type 1343 1587 -1025 2482 54 0 0 chr5 32764931 32765227 -170320305 + AluY SINE Alu 1 296 -15 2202 228 94 75 chr5 32765227 32765826 -170319706 + Charlie7 DNA MER1_type 1587 2174 -438 2367 60 0 10 chr5 32765826 32766127 -170319405 + AluY SINE Alu 1 298 -13 2202 228 94 75 chr5 32766127 32766138 -170319394 + Charlie7 DNA MER1_type 2174 2183 -429 1983 130 3 0 chr5 32766138 32766430 -170319102 + AluSx SINE Alu 3 295 -17 2202 228 94 75 chr5 32766430 32766553 -170318979 + Charlie7 DNA MER1_type 2183 2356 -256 204 97 0 0 chr5 32766570 32766601 -170318931 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 1855 150 0 0 chr5 32766601 32766888 -170318644 - AluSx SINE Alu -25 287 1 1848 154 0 7 chr5 32766890 32767196 -170318336 - AluJb SINE Alu -8 304 1 730 284 52 55 chr5 32768064 32768299 -170317233 - L1MC4a LINE L1 -1876 5932 5697 2147 123 0 0 chr5 32768299 32768601 -170316931 + AluSx SINE Alu 1 302 -10 730 284 52 55 chr5 32768601 32768805 -170316727 - L1MC4a LINE L1 -2111 5697 5494 1987 148 75 0 chr5 32768995 32769327 -170316205 - LTR45B LTR ERV1 -131 358 2 31 26 0 0 chr5 32769452 32769490 -170316042 + AT_rich Low_complexity Low_complexity 1 38 0 549 31 0 0 chr5 32769490 32769554 -170315978 - U6 snRNA snRNA -31 76 13 322 228 186 80 chr5 32769603 32769915 -170315617 - L1ME LINE L1 -467 5654 5310 33 25 0 0 chr5 32770154 32770194 -170315338 + AT_rich Low_complexity Low_complexity 1 40 0 2343 76 0 0 chr5 32770312 32770603 -170314929 - AluSc SINE Alu -18 291 1 4032 67 13 4 chr5 32770607 32771142 -170314390 - L1PA8 LINE L1 -4 6168 5629 1073 137 33 11 chr5 32771193 32771375 -170314157 - AluJb SINE Alu -7 305 120 252 0 0 0 chr5 32772077 32772105 -170313427 + (A)n Simple_repeat Simple_repeat 1 28 0 1873 127 3 13 chr5 32772118 32772417 -170313115 + AluSg SINE Alu 12 307 -3 551 230 26 0 chr5 32772518 32772631 -170312901 + MLT1E3 LTR MaLR 317 432 -192 2060 187 104 6 chr5 32772631 32773101 -170312431 - MER34 LTR ERV1 0 542 27 651 185 196 35 chr5 32773106 32773279 -170312253 + MLT1E3 LTR MaLR 424 624 0 599 184 0 0 chr5 32773502 32773605 -170311927 + U13 snRNA snRNA 1 103 -1 234 196 22 0 chr5 32773651 32773697 -170311835 + MIR SINE MIR 103 149 -113 344 253 22 0 chr5 32773779 32773870 -170311662 + MIR SINE MIR 164 256 -6 211 352 11 0 chr5 32774679 32774767 -170310765 - MIR SINE MIR 0 262 174 2189 104 0 10 chr5 32775311 32775610 -170309922 + AluSx SINE Alu 1 296 -16 523 267 95 25 chr5 32775704 32775888 -170309644 - MIR SINE MIR -68 140 2 274 333 34 8 chr5 32776111 32776228 -170309304 - L2 LINE L2 0 3313 3194 2250 113 3 0 chr5 32776331 32776642 -170308890 + AluSx SINE Alu 1 312 0 3339 196 104 6 chr5 32776645 32777411 -170308121 - L1MB8 LINE L1 0 6178 5316 1417 194 3 45 chr5 32777411 32777721 -170307811 - AluJo SINE Alu -15 297 1 3339 196 104 6 chr5 32777721 32777831 -170307701 - L1MB8 LINE L1 -862 5316 5218 931 265 31 14 chr5 32777828 32778051 -170307481 - L1M4 LINE L1 -6039 503 277 * 544 209 0 0 chr5 32778053 32778163 -170307369 - L1M4 LINE L1 -6409 133 24 287 313 78 39 chr5 32778193 32778254 -170307278 - L1ME3A LINE L1 -5 6165 6108 1843 116 46 3 chr5 32778254 32778538 -170306994 - AluSx SINE Alu -16 296 1 287 313 78 39 chr5 32778538 32778655 -170306877 - L1ME3A LINE L1 -62 6108 5980 1905 141 20 3 chr5 32778692 32778990 -170306542 + AluSx SINE Alu 1 303 -9 2408 42 0 36 chr5 32779090 32779397 -170306135 - AluY SINE Alu -15 296 1 22 56 0 0 chr5 32779421 32779457 -170306075 + AT_rich Low_complexity Low_complexity 1 36 0 1013 76 8 0 chr5 32780123 32780255 -170305277 + AluSc SINE Alu 1 133 -176 2269 78 7 13 chr5 32780255 32780388 -170305144 + AluSc SINE Alu 1 133 -176 2336 77 0 3 chr5 32780388 32780686 -170304846 + AluSc SINE Alu 1 297 -12 2269 78 7 13 chr5 32780686 32780859 -170304673 + AluSc SINE Alu 133 305 -4 820 148 0 0 chr5 32780973 32781101 -170304431 - FLAM_C SINE Alu -2 141 14 1204 200 17 4 chr5 32781106 32781336 -170304196 + L1MB3 LINE L1 5912 6144 -39 533 122 0 0 chr5 32781360 32781434 -170304098 + U6 snRNA snRNA 1 74 -33 2101 93 0 3 chr5 32781454 32781745 -170303787 + AluSx SINE Alu 1 290 -22 319 73 0 0 chr5 32781745 32781791 -170303741 + L1MB4 LINE L1 6131 6179 -1 1851 168 3 0 chr5 32782108 32782417 -170303115 + AluJb SINE Alu 1 310 -2 581 105 0 0 chr5 32782417 32782493 -170303039 - AluY SINE Alu -223 88 13 649 117 0 0 chr5 32782493 32782587 -170302945 + AluSg/x SINE Alu 217 310 0 1468 66 0 0 chr5 32783629 32783810 -170301722 + L1PA5 LINE L1 5966 6146 -8 189 132 0 0 chr5 32783810 32783848 -170301684 + (TA)n Simple_repeat Simple_repeat 1 38 0 2143 95 10 0 chr5 32784259 32784553 -170300979 + AluSq SINE Alu 1 297 -16 270 290 48 0 chr5 32784721 32784783 -170300749 + L2 LINE L2 3202 3266 -6 1932 127 13 20 chr5 32785151 32785451 -170300081 - AluSx SINE Alu -14 298 1 1913 130 10 10 chr5 32785660 32785998 -170299534 + AluSx SINE Alu 1 312 0 215 360 64 0 chr5 32786151 32786276 -170299256 - MIR3 SINE MIR -38 170 38 2108 111 0 7 chr5 32786364 32786661 -170298871 + AluSx SINE Alu 1 295 -17 833 192 0 29 chr5 32786661 32786833 -170298699 + AluJb SINE Alu 134 300 -12 30 0 0 0 chr5 32786962 32786992 -170298540 + AT_rich Low_complexity Low_complexity 1 30 0 1778 128 0 0 chr5 32787027 32787278 -170298254 - AluSq SINE Alu -58 255 5 230 260 0 52 chr5 32788499 32788595 -170296937 - AluYb8 SINE Alu -96 212 122 22 0 0 0 chr5 32790596 32790618 -170294914 + AT_rich Low_complexity Low_complexity 1 22 0 331 202 4 130 chr5 32791060 32791313 -170294219 - AluSg SINE Alu -19 281 61 855 142 32 53 chr5 32791702 32791892 -170293640 + MER53 DNA DNA 3 188 -1 1828 113 28 7 chr5 32792149 32792182 -170293350 - AluSg SINE Alu -20 290 259 207 0 0 0 chr5 32792182 32792205 -170293327 + (GGCTG)n Simple_repeat Simple_repeat 5 27 0 1828 113 28 7 chr5 32792205 32792455 -170293077 - AluSg SINE Alu -51 259 1 2268 102 3 0 chr5 32792817 32793121 -170292411 - AluSq SINE Alu -8 305 1 1664 128 17 31 chr5 32793527 32793816 -170291716 - AluSx SINE Alu -10 302 18 2082 113 0 0 chr5 32794252 32794583 -170290949 + AluSx SINE Alu 1 331 0 389 221 11 11 chr5 32795042 32795137 -170290395 - MLT1L LTR MaLR -18 597 503 475 234 40 0 chr5 32795891 32796015 -170289517 + HAL1 LINE L1 109 237 -2270 387 268 118 7 chr5 32796157 32796310 -170289222 + HAL1 LINE L1 480 649 -1858 189 284 14 27 chr5 32796399 32796473 -170289059 + MER5B DNA MER1_type 1 73 -105 264 239 0 70 chr5 32796488 32796559 -170288973 - L2 LINE L2 0 3313 3248 1065 213 71 58 chr5 32796621 32797016 -170288516 + HAL1 LINE L1 791 1190 -1317 1029 232 29 8 chr5 32797016 32797257 -170288275 - LTR8 LTR ERV1 0 691 446 1307 167 27 68 chr5 32797884 32797997 -170287535 + AluJb SINE Alu 1 117 -199 2501 113 16 11 chr5 32797997 32798368 -170287164 + THE1C LTR MaLR 1 373 -2 1307 167 27 68 chr5 32798368 32798582 -170286950 + AluJb SINE Alu 117 316 0 504 32 0 0 chr5 32798716 32798778 -170286754 + (TA)n Simple_repeat Simple_repeat 1 62 0 243 61 0 0 chr5 32799529 32799562 -170285970 + (CA)n Simple_repeat Simple_repeat 2 34 0 534 255 32 83 chr5 32799609 32799713 -170285819 + MIR SINE MIR 56 164 -98 2108 106 3 0 chr5 32799713 32800006 -170285526 + AluSc SINE Alu 1 294 -15 2263 99 0 0 chr5 32800011 32800305 -170285227 + AluSg SINE Alu 1 294 -16 534 255 32 83 chr5 32800305 32800410 -170285122 + MIR SINE MIR 168 260 -2 286 280 56 17 chr5 32800606 32800749 -170284783 - MIR SINE MIR -61 201 16 189 234 0 43 chr5 32800874 32800921 -170284611 + MIR3 SINE MIR 12 56 -152 2149 100 10 3 chr5 32801192 32801501 -170284031 - AluSq SINE Alu -2 311 1 1999 121 7 7 chr5 32801582 32801887 -170283645 - AluSx SINE Alu -7 305 1 351 208 104 10 chr5 32802882 32802978 -170282554 - MER53 DNA DNA -80 109 5 285 202 139 116 chr5 32803393 32803522 -170282010 - MER20 DNA MER1_type -87 132 1 202 393 0 11 chr5 32803598 32803687 -170281845 - MIR SINE MIR -85 123 36 575 247 68 36 chr5 32803941 32804192 -170281340 + MIR SINE MIR 1 259 -3 2272 78 0 3 chr5 32804461 32804755 -170280777 - AluSx SINE Alu -19 293 1 186 339 0 0 chr5 32804839 32804895 -170280637 - L2 LINE L2 0 3272 3217 2266 80 13 0 chr5 32806787 32807086 -170278446 + AluSx SINE Alu 1 303 -9 2294 66 0 0 chr5 32807088 32807375 -170278157 + AluY SINE Alu 1 287 -24 810 288 83 17 chr5 32807549 32807789 -170277743 + MIR SINE MIR 7 262 0 320 263 20 72 chr5 32807852 32807882 -170277650 - L1MC4 LINE L1 -1320 6722 6692 2029 108 0 0 chr5 32807882 32808159 -170277373 + AluSx SINE Alu 1 277 -35 180 0 0 0 chr5 32808160 32808180 -170277352 + (TC)n Simple_repeat Simple_repeat 1 20 0 1101 126 0 0 chr5 32808180 32808355 -170277177 + (TA)n Simple_repeat Simple_repeat 2 176 0 320 263 20 72 chr5 32808355 32808473 -170277059 - L1MC4 LINE L1 -1348 6694 6615 * 408 253 23 0 chr5 32808397 32808484 -170277048 + L1MC4 LINE L1 6615 6703 -1339 349 258 77 0 chr5 32808486 32808594 -170276938 + L1MC4 LINE L1 6571 6652 -1133 916 295 26 49 chr5 32808857 32808952 -170276580 - L3b LINE CR1 -138 1445 1349 2197 102 0 0 chr5 32808952 32809256 -170276276 - AluY SINE Alu -7 304 1 916 295 26 49 chr5 32809256 32809509 -170276023 - L3b LINE CR1 -234 1349 1105 2039 123 0 0 chr5 32810179 32810472 -170275060 - AluSg SINE Alu -14 296 4 1947 132 0 16 chr5 32810589 32810899 -170274633 - AluSx SINE Alu 0 312 8 2154 111 0 0 chr5 32810919 32811217 -170274315 - AluSx SINE Alu -14 298 1 252 0 0 0 chr5 32815229 32815257 -170270275 + (TA)n Simple_repeat Simple_repeat 1 28 0 393 162 0 140 chr5 32815259 32815336 -170270196 - HAL1 LINE L1 -33 2474 2422 763 178 0 22 chr5 32815336 32815471 -170270061 - FLAM_C SINE Alu -1 132 1 393 162 0 140 chr5 32815471 32815529 -170270003 - HAL1 LINE L1 -85 2422 2358 755 294 68 4 chr5 32815561 32815809 -170269723 - HAL1 LINE L1 -604 1903 1640 878 245 68 45 chr5 32815810 32816120 -170269412 - HAL1 LINE L1 -900 1607 1291 2037 125 10 0 chr5 32816142 32816446 -170269086 - AluSx SINE Alu -5 307 1 1039 83 0 0 chr5 32816450 32816583 -170268949 - AluSq/x SINE Alu -179 133 1 1148 220 62 70 chr5 32816615 32816687 -170268845 - HAL1 LINE L1 -1253 1254 1183 2286 141 155 124 chr5 32816687 32817052 -170268480 + LTR8A LTR ERV1 3 355 -372 1878 131 14 0 chr5 32817052 32817335 -170268197 - AluSx SINE Alu -25 287 1 2286 141 155 124 chr5 32817335 32817672 -170267860 + LTR8A LTR ERV1 355 727 0 1148 220 62 70 chr5 32817672 32818067 -170267465 - HAL1 LINE L1 -1324 1183 791 264 239 0 70 chr5 32818129 32818200 -170267332 + L2 LINE L2 3248 3313 0 190 246 16 33 chr5 32818215 32818276 -170267256 - MER5B DNA MER1_type -105 73 14 235 231 92 110 chr5 32818394 32818567 -170266965 - HAL1 LINE L1 -1858 649 480 1999 117 3 32 chr5 32818861 32819035 -170266497 - AluSx SINE Alu -5 307 144 1914 104 3 60 chr5 32819035 32819351 -170266181 - AluSg SINE Alu -12 298 1 1999 117 3 32 chr5 32819351 32819492 -170266040 - AluSx SINE Alu -168 144 1 1235 220 124 41 chr5 32820298 32820735 -170264797 + LTR33 LTR ERVL 47 519 -2 2050 107 21 0 chr5 32820831 32821121 -170264411 - AluSq SINE Alu -17 296 1 2472 52 3 0 chr5 32821147 32821454 -170264078 - AluY SINE Alu -3 308 1 1678 161 3 10 chr5 32821607 32821906 -170263626 - AluJo SINE Alu -2 310 14 2379 65 7 0 chr5 32821929 32822238 -170263294 - AluY SINE Alu 0 311 1 1573 192 16 0 chr5 32822299 32822606 -170262926 - AluJb SINE Alu 0 312 1 214 273 36 0 chr5 32823106 32823161 -170262371 - L2 LINE L2 -1 3271 3215 274 335 99 7 chr5 32823206 32823358 -170262174 - MIR3 SINE MIR -6 202 37 213 154 0 0 chr5 32824192 32824231 -170261301 + (CGGGG)n Simple_repeat Simple_repeat 1 39 0 218 217 0 0 chr5 32824241 32824287 -170261245 - L2 LINE L2 -17 3255 3210 2140 97 0 7 chr5 32824471 32824769 -170260763 + AluSg SINE Alu 1 296 -14 278 330 18 9 chr5 32824779 32824891 -170260641 + MIR SINE MIR 81 193 -69 1979 133 0 3 chr5 32825080 32825380 -170260152 - AluSx SINE Alu -13 299 1 1438 53 5 5 chr5 32825712 32825901 -170259631 + AluY SINE Alu 123 311 0 2266 87 0 3 chr5 32826913 32827213 -170258319 + AluSx SINE Alu 1 299 -13 2079 93 17 0 chr5 32827766 32828056 -170257476 - AluSx SINE Alu -17 295 1 868 198 0 16 chr5 32828118 32828300 -170257232 - AluJ SINE Alu 0 312 134 252 0 0 0 chr5 32828450 32828478 -170257054 + (TG)n Simple_repeat Simple_repeat 2 29 0 337 191 0 0 chr5 32829007 32829075 -170256457 - MLT2B1 LTR ERVL -2 518 451 454 225 0 0 chr5 32829104 32829184 -170256348 + Tigger3(Golem) DNA MER2_type 1 80 -2949 579 188 20 0 chr5 32829302 32829403 -170256129 + Tigger3(Golem) DNA MER2_type 2935 3037 0 207 162 0 0 chr5 32829405 32829442 -170256090 + (TA)n Simple_repeat Simple_repeat 1 37 0 1675 148 4 14 chr5 32829486 32829764 -170255768 + AluJo SINE Alu 28 302 -10 344 217 0 0 chr5 32829774 32829834 -170255698 - MLT2D LTR ERVL -74 340 281 432 0 0 0 chr5 32829841 32829889 -170255643 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 832 126 0 16 chr5 32829889 32830009 -170255523 - AluJ SINE Alu -191 121 2 1653 156 48 54 chr5 32830011 32830048 -170255484 - MLT2C2 LTR ERVL -132 332 296 1967 115 18 0 chr5 32830048 32830334 -170255198 - AluSp SINE Alu -20 293 3 1653 156 48 54 chr5 32830334 32830630 -170254902 - MLT2C2 LTR ERVL -168 296 1 2099 138 0 0 chr5 32830787 32831092 -170254440 + AluSx SINE Alu 1 305 -7 2021 125 3 7 chr5 32831610 32831907 -170253625 + AluSx SINE Alu 1 296 -16 287 226 48 0 chr5 32831907 32832031 -170253501 + (TA)n Simple_repeat Simple_repeat 1 130 0 531 323 89 10 chr5 32832099 32832595 -170252937 - L1M4 LINE L1 -1305 4841 4307 1981 139 10 0 chr5 32832596 32832899 -170252633 - AluSx SINE Alu -6 306 1 458 177 194 38 chr5 32833223 32833409 -170252123 + MIR SINE MIR 48 262 0 1538 196 0 11 chr5 32833510 32833826 -170251706 - AluJb SINE Alu 0 313 1 2027 110 4 0 chr5 32833984 32834294 -170251238 - AluSq SINE Alu 0 313 3 2473 30 7 7 chr5 32834863 32835168 -170250364 - AluY SINE Alu -6 305 1 2406 66 0 0 chr5 32835412 32835716 -170249816 + AluY SINE Alu 1 304 -7 2074 90 6 35 chr5 32836218 32836529 -170249003 - AluSq SINE Alu -11 302 1 2352 80 0 3 chr5 32837095 32837406 -170248126 - AluSg SINE Alu 0 310 1 387 0 0 0 chr5 32837633 32837676 -170247856 + (TG)n Simple_repeat Simple_repeat 2 44 0 1963 109 7 30 chr5 32837681 32837983 -170247549 - AluSq SINE Alu -16 297 3 214 164 16 16 chr5 32837983 32838032 -170247500 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 2019 105 3 14 chr5 32838032 32838326 -170247206 - AluSx SINE Alu -21 291 1 241 339 41 47 chr5 32838451 32838622 -170246910 - MIR SINE MIR -32 230 61 383 304 24 30 chr5 32839004 32839054 -170246478 - L2 LINE L2 -6 3307 3258 1914 133 20 3 chr5 32839054 32839356 -170246176 + AluSx SINE Alu 1 307 -5 383 304 24 30 chr5 32839356 32839473 -170246059 - L2 LINE L2 -55 3258 3141 2102 128 0 0 chr5 32839524 32839828 -170245704 - AluSx SINE Alu -8 304 1 1610 157 64 0 chr5 32839927 32840208 -170245324 - AluSx SINE Alu -13 299 1 2034 115 0 0 chr5 32840238 32840525 -170245007 + AluSx SINE Alu 1 287 -25 309 51 0 0 chr5 32840531 32840570 -170244962 + (CATA)n Simple_repeat Simple_repeat 1 39 0 203 262 0 0 chr5 32840667 32840709 -170244823 + MIR3 SINE MIR 119 160 -48 1254 142 5 0 chr5 32840900 32841097 -170244435 - AluSg/x SINE Alu -16 294 97 1022 157 0 0 chr5 32841097 32841250 -170244282 - AluSq SINE Alu -160 153 1 219 69 0 0 chr5 32841466 32841495 -170244037 + (A)n Simple_repeat Simple_repeat 1 29 0 440 295 166 0 chr5 32841697 32841938 -170243594 + L1MC4a LINE L1 5585 5865 -1943 1867 108 56 0 chr5 32842220 32842506 -170243026 - AluSq SINE Alu -11 302 1 2187 88 0 7 chr5 32843012 32843308 -170242224 - AluY SINE Alu -17 294 1 222 91 0 0 chr5 32843544 32843577 -170241955 + (CA)n Simple_repeat Simple_repeat 2 34 0 308 200 0 15 chr5 32844453 32844518 -170241014 - L1MDa LINE L1 -4036 2504 2441 1955 96 7 4 chr5 32844530 32844801 -170240731 - AluSx SINE Alu -40 272 1 1911 117 0 29 chr5 32846046 32846353 -170239179 + AluSx SINE Alu 1 298 -14 592 225 174 0 chr5 32846494 32846672 -170238860 + MER3 DNA MER1_type 1 209 0 1323 98 0 16 chr5 32847437 32847613 -170237919 - AluSg/x SINE Alu -3 309 135 2126 116 6 0 chr5 32847613 32847924 -170237608 - AluSp SINE Alu 0 313 1 1323 98 0 16 chr5 32847924 32847940 -170237592 - AluSg/x SINE Alu -177 135 120 1684 151 10 24 chr5 32848221 32848519 -170237013 - AluJo SINE Alu -18 294 1 401 266 35 0 chr5 32848693 32848806 -170236726 + MER94 DNA DNA 2 118 -16 1581 161 0 11 chr5 32848901 32849180 -170236352 - AluJb SINE Alu -36 276 1 191 340 0 0 chr5 32849191 32849238 -170236294 - L2 LINE L2 -102 3170 3124 1926 141 7 3 chr5 32849598 32849904 -170235628 + AluJb SINE Alu 1 307 -5 1906 106 0 60 chr5 32850188 32850522 -170235010 - AluSq SINE Alu 0 316 1 220 67 0 67 chr5 32851186 32851218 -170234314 + (TTCCC)n Simple_repeat Simple_repeat 3 33 -11 1958 108 0 4 chr5 32851218 32851497 -170234035 - AluSg SINE Alu -32 278 1 220 67 0 67 chr5 32851497 32851509 -170234023 + (TTCCC)n Simple_repeat Simple_repeat 33 44 0 1697 202 45 8 chr5 32851519 32851871 -170233661 + MLT1A1 LTR MaLR 1 365 0 309 249 117 61 chr5 32852222 32852419 -170233113 - MIR SINE MIR -14 248 41 492 18 0 0 chr5 32852633 32852690 -170232842 + (TG)n Simple_repeat Simple_repeat 1 57 0 327 246 0 0 chr5 32852797 32852866 -170232666 - L2 LINE L2 0 3272 3204 1559 168 36 11 chr5 32852985 32853265 -170232267 + AluJb SINE Alu 1 287 -25 1883 125 0 14 chr5 32854053 32854350 -170231182 - AluSx SINE Alu -19 293 1 2292 71 10 3 chr5 32855127 32855436 -170230096 - AluY SINE Alu 0 311 1 1913 128 0 20 chr5 32855438 32855742 -170229790 - AluSx SINE Alu -14 298 1 375 290 95 38 chr5 32855849 32855944 -170229588 + MIR SINE MIR 31 119 -143 1845 153 62 37 chr5 32855944 32856297 -170229235 + MLT1A1 LTR MaLR 1 362 -3 375 290 95 38 chr5 32856297 32856409 -170229123 + MIR SINE MIR 119 250 -12 2177 112 7 0 chr5 32857445 32857750 -170227782 + AluSx SINE Alu 1 307 -5 4100 166 62 22 chr5 32857902 32858776 -170226756 - L1MB7 LINE L1 0 6184 5276 1228 128 5 0 chr5 32858788 32858975 -170226557 - AluSg/x SINE Alu -8 302 115 1433 84 14 33 chr5 32858977 32859190 -170226342 + AluSg/x SINE Alu 89 297 -13 257 222 0 0 chr5 32859210 32859264 -170226268 - L1MB7 LINE L1 -1194 4952 4899 335 258 0 34 chr5 32859264 32859353 -170226179 + L1M4 LINE L1 5215 5300 -846 1834 107 7 18 chr5 32859356 32859637 -170225895 + AluSx SINE Alu 35 312 0 1744 164 13 10 chr5 32859674 32859985 -170225547 + AluJo SINE Alu 1 312 0 2089 114 0 25 chr5 32860029 32860346 -170225186 - AluSq SINE Alu -4 309 1 21 36 0 0 chr5 32860348 32860376 -170225156 + AT_rich Low_complexity Low_complexity 1 28 0 264 174 0 0 chr5 32860614 32860660 -170224872 - L2 LINE L2 -2 3270 3225 1452 73 0 5 chr5 32860840 32861032 -170224500 - AluY SINE Alu -10 301 111 233 167 0 100 chr5 32861032 32861092 -170224440 - AluSp SINE Alu -140 163 110 2025 98 0 47 chr5 32861281 32861598 -170223934 - AluSx SINE Alu -10 302 1 1179 120 0 0 chr5 32862325 32862500 -170223032 - AluY SINE Alu -1 310 136 352 193 217 12 chr5 32862581 32862691 -170222841 - AluJ SINE Alu 0 308 182 827 158 0 0 chr5 32862691 32862824 -170222708 - AluJ SINE Alu -179 133 1 2071 123 0 0 chr5 32862875 32863177 -170222355 + AluSx SINE Alu 1 302 -10 1385 191 113 29 chr5 32863456 32863801 -170221731 - MLT1A2 LTR MaLR 0 374 1 2315 97 0 0 chr5 32864118 32864428 -170221104 + AluSg SINE Alu 1 310 0 1907 116 20 7 chr5 32865078 32865370 -170220162 + AluSx SINE Alu 1 296 -16 747 230 53 79 chr5 32866300 32866533 -170218999 - MIR SINE MIR -3 259 32 1924 120 0 47 chr5 32866533 32866710 -170218822 - AluSx SINE Alu -10 302 145 1888 128 54 7 chr5 32866710 32867006 -170218526 - AluSg SINE Alu 0 310 1 1924 120 0 47 chr5 32867006 32867145 -170218387 - AluSx SINE Alu -167 145 1 747 230 53 79 chr5 32867145 32867176 -170218356 - MIR SINE MIR -230 32 2 26 0 0 0 chr5 32867224 32867250 -170218282 + AT_rich Low_complexity Low_complexity 1 26 0 356 303 91 18 chr5 32867540 32867705 -170217827 - MIR SINE MIR -36 226 50 589 303 20 20 chr5 32867886 32868084 -170217448 - LTR67 LTR ERVL -9 548 351 225 94 0 0 chr5 32868349 32868381 -170217151 + (CCCCAG)n Simple_repeat Simple_repeat 1 32 0 1833 182 16 0 chr5 32868410 32868717 -170216815 - MLT1A1 LTR MaLR 0 365 54 239 208 21 0 chr5 32868716 32868764 -170216768 + MLT1B LTR MaLR 8 56 -334 * 261 86 0 0 chr5 32868777 32868812 -170216720 - MLT1A1 LTR MaLR -330 35 1 894 176 12 57 chr5 32869243 32869487 -170216045 + AluSg/x SINE Alu 69 301 -9 1789 151 0 20 chr5 32870456 32870754 -170214778 - AluJb SINE Alu -20 292 1 2291 142 48 5 chr5 32871061 32871458 -170214074 + L1MC1 LINE L1 5677 6089 -244 579 209 32 70 chr5 32871471 32871629 -170213903 - AluJb SINE Alu -158 154 3 996 158 22 33 chr5 32871650 32871833 -170213699 + L1MC1 LINE L1 6103 6283 -50 1283 194 21 0 chr5 32871840 32872110 -170213422 - AluJo SINE Alu 0 312 38 1198 188 28 53 chr5 32872140 32872422 -170213110 - AluJo SINE Alu -37 275 1 180 111 0 0 chr5 32872422 32872449 -170213083 + (T)n Simple_repeat Simple_repeat 1 27 0 280 67 0 22 chr5 32872450 32872495 -170213037 + L1MC1 LINE L1 6281 6324 -9 1556 74 5 0 chr5 32872507 32872709 -170212823 + AluSx SINE Alu 1 203 -109 325 77 0 19 chr5 32872821 32872873 -170212659 + Alu SINE Alu 252 302 0 788 98 0 0 chr5 32872881 32872983 -170212549 + MSTA LTR MaLR 327 428 0 1613 139 75 0 chr5 32873076 32873343 -170212189 - AluJb SINE Alu -21 291 5 2177 112 7 0 chr5 32876218 32876523 -170209009 + AluSx SINE Alu 1 307 -5 4077 166 63 22 chr5 32876675 32877548 -170207984 - L1MB7 LINE L1 0 6184 5276 1778 123 17 17 chr5 32877560 32877853 -170207679 - AluSx SINE Alu -8 304 12 22 0 0 0 chr5 32878969 32878991 -170206541 + AT_rich Low_complexity Low_complexity 1 22 0 5137 165 18 24 chr5 32880393 32881185 -170204347 + L1PA16 LINE L1 4681 5476 -690 1462 166 10 28 chr5 32881185 32881475 -170204057 + AluJo SINE Alu 12 296 -16 2101 102 10 0 chr5 32881485 32881789 -170203743 + AluSq SINE Alu 1 307 -6 5137 165 18 24 chr5 32881789 32882475 -170203057 + L1PA16 LINE L1 5485 6163 -3 2009 108 3 14 chr5 32882607 32882927 -170202605 - AluSx SINE Alu 0 312 1 339 106 0 0 chr5 32883534 32883581 -170201951 - AluS SINE Alu -226 77 31 2069 97 14 0 chr5 32883724 32884003 -170201529 - AluSx SINE Alu -18 294 12 855 202 16 27 chr5 32884591 32884774 -170200758 - MER20 DNA MER1_type -38 181 1 1321 102 0 11 chr5 32884815 32885002 -170200530 + AluSq SINE Alu 1 185 -128 2162 167 30 40 chr5 32885055 32885444 -170200088 + MSTB LTR MaLR 1 387 -39 2286 40 43 17 chr5 32885444 32885746 -170199786 - AluY SINE Alu -1 310 1 2162 167 30 40 chr5 32885746 32885786 -170199746 + MSTB LTR MaLR 387 426 0 555 134 0 0 chr5 32886037 32886119 -170199413 + AluS SINE Alu 3 84 -229 1900 151 0 0 chr5 32886278 32886570 -170198962 - AluSx SINE Alu -20 292 1 1005 111 0 0 chr5 32886570 32886705 -170198827 - AluSq/x SINE Alu -178 135 1 2155 89 0 0 chr5 32887514 32887829 -170197703 + AluSx SINE Alu 3 317 0 2800 152 15 41 chr5 32887849 32888150 -170197382 - L1MB3 LINE L1 -19 6164 5882 2297 88 0 3 chr5 32888150 32888456 -170197076 - AluSq SINE Alu -8 305 1 2800 152 15 41 chr5 32888456 32888692 -170196840 - L1MB3 LINE L1 -301 5882 5641 415 333 7 20 chr5 32888895 32889042 -170196490 + MIR3 SINE MIR 37 181 -27 24 0 0 0 chr5 32889847 32889871 -170195661 + AT_rich Low_complexity Low_complexity 1 24 0 2036 128 0 3 chr5 32890049 32890354 -170195178 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr5 32891663 32891684 -170193848 + AT_rich Low_complexity Low_complexity 1 21 0 507 217 154 21 chr5 32893131 32893274 -170192258 + MER58C DNA MER1_type 7 168 -47 816 154 0 0 chr5 32893337 32893454 -170192078 - AluSq/x SINE Alu -194 118 2 189 0 0 0 chr5 32897632 32897653 -170187879 + (TG)n Simple_repeat Simple_repeat 2 22 0 775 217 6 25 chr5 32897725 32897882 -170187650 - FRAM SINE Alu -12 154 1 2260 84 0 0 chr5 32898169 32898465 -170187067 + AluSx SINE Alu 1 296 -16 1335 209 148 25 chr5 32899048 32899479 -170186053 + Charlie4a DNA MER1_type 8 491 -17 278 130 0 22 chr5 32899631 32899677 -170185855 - MER5A DNA MER1_type -93 96 52 579 185 8 15 chr5 32901238 32901368 -170184164 - AluSx SINE Alu 0 312 184 1294 135 5 0 chr5 32901561 32901753 -170183779 - AluSx SINE Alu -119 193 1 218 271 163 47 chr5 32901812 32901941 -170183591 - MER5A DNA MER1_type -3 186 43 1436 186 9 47 chr5 32902132 32902454 -170183078 - AluJo SINE Alu -2 310 1 228 189 0 0 chr5 32902521 32902558 -170182974 - MIR SINE MIR -61 147 111 240 330 9 47 chr5 32902891 32902997 -170182535 + MIR SINE MIR 90 191 -71 1241 197 68 4 chr5 32903003 32903267 -170182265 + AluSx SINE Alu 1 281 -31 185 178 22 0 chr5 32903304 32903349 -170182183 + GA-rich Low_complexity Low_complexity 1 46 0 2219 101 3 0 chr5 32904268 32904575 -170180957 + AluSx SINE Alu 1 308 -4 388 153 0 14 chr5 32904826 32904898 -170180634 - LTR67 LTR ERVL -27 530 460 185 252 68 121 chr5 32904906 32905112 -170180420 - L3 LINE CR1 -221 1356 1162 1285 87 0 157 chr5 32905120 32905464 -170180068 - AluSg SINE Alu -11 299 10 293 273 16 66 chr5 32905505 32905626 -170179906 - L3 LINE CR1 -494 1083 969 1281 167 86 0 chr5 32906122 32906360 -170179172 - L1ME1 LINE L1 -6 6158 5966 1998 164 14 25 chr5 32906360 32906569 -170178963 - MLT1A1 LTR MaLR -2 363 158 1500 210 0 3 chr5 32906569 32906878 -170178654 - AluJb SINE Alu -4 308 1 1998 164 14 25 chr5 32906878 32907035 -170178497 - MLT1A1 LTR MaLR -207 158 1 1281 167 86 0 chr5 32907035 32907184 -170178348 - L1ME1 LINE L1 -198 5966 5759 2217 88 3 0 chr5 32908419 32908713 -170176819 - AluSg1 SINE Alu -14 295 1 1913 106 10 45 chr5 32909604 32909915 -170175617 - AluSg SINE Alu -10 300 1 369 264 78 23 chr5 32909920 32910049 -170175483 - L3 LINE CR1 -473 1104 969 1281 167 86 0 chr5 32910545 32910783 -170174749 - L1ME1 LINE L1 -6 6158 5966 1984 164 14 22 chr5 32910783 32910992 -170174540 - MLT1A1 LTR MaLR -2 363 157 1500 210 0 3 chr5 32910992 32911301 -170174231 - AluJb SINE Alu -4 308 1 1984 164 14 22 chr5 32911301 32911457 -170174075 - MLT1A1 LTR MaLR -208 157 1 1281 167 86 0 chr5 32911457 32911606 -170173926 - L1ME1 LINE L1 -198 5966 5759 2134 107 7 7 chr5 32912711 32913019 -170172513 + AluSx SINE Alu 3 310 -2 226 281 144 46 chr5 32913020 32913347 -170172185 + L1 LINE L1 4699 5057 -1089 1455 171 0 73 chr5 32913464 32913592 -170171940 + AluJo SINE Alu 1 137 -175 2081 87 24 0 chr5 32913592 32913879 -170171653 - AluSc SINE Alu -15 294 1 1455 171 0 73 chr5 32913879 32914066 -170171466 + AluJo SINE Alu 137 293 -19 2109 83 0 33 chr5 32914578 32914879 -170170653 + AluSg SINE Alu 1 291 -19 1788 103 0 56 chr5 32915223 32915549 -170169983 - AluSx SINE Alu 0 309 1 2368 213 59 21 chr5 32915550 32916250 -170169282 - L1 LINE L1 -2965 3181 2456 325 182 223 50 chr5 32916250 32916371 -170169161 + L1 LINE L1 3167 3308 -2838 732 56 0 0 chr5 32916371 32916461 -170169071 + AluY SINE Alu 160 249 -62 1425 127 4 4 chr5 32916461 32916495 -170169037 + AluSg/x SINE Alu 83 116 -194 226 43 0 65 chr5 32916495 32916541 -170168991 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1425 127 4 4 chr5 32916541 32916734 -170168798 + AluSg/x SINE Alu 115 310 0 589 152 0 10 chr5 32916850 32916949 -170168583 - FRAM SINE Alu -8 168 71 462 209 22 0 chr5 32917075 32917166 -170168366 - FRAM SINE Alu -84 92 1 2168 109 3 3 chr5 32918205 32918517 -170167015 - AluSq SINE Alu -1 312 1 1499 167 0 25 chr5 32918604 32918880 -170166652 - AluJo SINE Alu -33 279 11 1908 105 0 14 chr5 32918911 32919196 -170166336 - AluSg SINE Alu -28 282 2 43 20 0 0 chr5 32919203 32919253 -170166279 + AT_rich Low_complexity Low_complexity 1 50 0 1909 133 31 0 chr5 32919328 32919614 -170165918 - AluSx SINE Alu -17 295 1 1654 211 72 34 chr5 32919673 32920118 -170165414 - MLT1C LTR MaLR 0 467 6 208 93 70 0 chr5 32920131 32920174 -170165358 + CT-rich Low_complexity Low_complexity 4 49 0 1742 114 54 20 chr5 32920176 32920473 -170165059 - AluSp SINE Alu -6 307 1 27 92 0 0 chr5 32920760 32920836 -170164696 + AT_rich Low_complexity Low_complexity 1 76 0 253 270 40 27 chr5 32920876 32920950 -170164582 + L2 LINE L2 3153 3227 -45 1573 156 4 14 chr5 32921233 32921509 -170164023 + AluJb SINE Alu 21 293 -19 1529 143 99 0 chr5 32921603 32921875 -170163657 - AluSg SINE Alu -6 304 6 262 88 70 88 chr5 32924648 32924674 -170160858 + MADE1 DNA Mariner 1 26 -54 2400 50 0 22 chr5 32924674 32924991 -170160541 - AluY SINE Alu -1 310 1 262 88 70 88 chr5 32924991 32925021 -170160511 + MADE1 DNA Mariner 26 56 -24 3580 112 70 16 chr5 32925027 32925582 -170159950 - LTR9B LTR ERV1 0 644 60 1947 112 7 17 chr5 32925582 32925878 -170159654 + AluSp SINE Alu 1 293 -20 523 263 86 38 chr5 32926061 32926270 -170159262 + MIR SINE MIR 35 253 -9 788 219 0 0 chr5 32927970 32928125 -170157407 + MLT1A1 LTR MaLR 1 155 -210 1622 104 0 0 chr5 32928125 32928347 -170157185 + AluSg/x SINE Alu 74 295 -15 1435 124 18 5 chr5 32928347 32928565 -170156967 + AluSp SINE Alu 2 222 -91 1594 184 0 4 chr5 32928812 32929090 -170156442 - AluJb SINE Alu -35 277 1 549 234 94 16 chr5 32929171 32929299 -170156233 + L2 LINE L2 3133 3270 -2 1783 133 12 62 chr5 32930416 32930647 -170154885 + AluJo SINE Alu 1 214 -98 1890 135 0 0 chr5 32930647 32930957 -170154575 - AluSx SINE Alu 0 310 1 1783 133 12 62 chr5 32930957 32931048 -170154484 + AluJo SINE Alu 214 308 -4 561 256 38 25 chr5 32931220 32931380 -170154152 - LTR40b LTR ERVL -34 428 267 808 178 41 0 chr5 32931458 32931604 -170153928 + AluJb SINE Alu 147 298 -14 1644 88 0 25 chr5 32931954 32932192 -170153340 - THE1B LTR MaLR -132 232 1 1241 157 42 0 chr5 32932489 32932706 -170152826 - AluJo SINE Alu -2 310 85 1930 101 6 35 chr5 32933404 32933721 -170151811 - AluSg SINE Alu -2 308 1 719 178 0 30 chr5 32933728 32933863 -170151669 - FLAM_C SINE Alu -2 131 1 1978 120 0 3 chr5 32934396 32934679 -170150853 + AluSx SINE Alu 1 282 -30 2194 92 14 0 chr5 32935143 32935437 -170150095 + AluY SINE Alu 1 298 -13 2039 107 0 32 chr5 32935993 32936303 -170149229 + AluSx SINE Alu 1 300 -12 323 277 89 27 chr5 32936431 32936503 -170149029 - MIR3 SINE MIR -42 166 88 355 306 105 0 chr5 32936503 32936627 -170148905 + MIR SINE MIR 3 139 -123 2043 132 83 8 chr5 32936762 32937148 -170148384 - L1MB7 LINE L1 -22 6162 5748 226 118 0 59 chr5 32937764 32937815 -170147717 + (GGGAGA)n Simple_repeat Simple_repeat 2 49 0 1048 172 34 10 chr5 32938138 32938342 -170147190 + MER3 DNA MER1_type 1 209 0 351 272 175 34 chr5 32938490 32938696 -170146836 + MIR SINE MIR 21 255 -7 1884 124 28 3 chr5 32938759 32939049 -170146483 + AluSx SINE Alu 1 297 -15 1840 116 43 20 chr5 32939238 32939541 -170145991 + AluSx SINE Alu 1 310 -2 181 269 97 60 chr5 32940340 32940474 -170145058 + L2 LINE L2 2915 3053 -219 2146 120 0 13 chr5 32941484 32941800 -170143732 - AluSx SINE Alu 0 312 1 948 298 110 36 chr5 32941935 32942897 -170142635 + L2 LINE L2 2282 3313 0 400 235 65 26 chr5 32943500 32943653 -170141879 - MIR3 SINE MIR -17 191 33 2277 156 41 30 chr5 32943739 32943823 -170141709 + L1PB4 LINE L1 5707 5789 -367 2209 109 0 6 chr5 32943823 32944136 -170141396 + AluSx SINE Alu 1 311 -1 2277 156 41 30 chr5 32944136 32944487 -170141045 + L1PB4 LINE L1 5789 6147 -9 238 333 62 19 chr5 32944639 32944801 -170140731 - L2 LINE L2 -207 3065 2897 748 230 92 98 chr5 32944850 32945219 -170140313 + MER21B LTR ERV1 134 500 -363 182 339 0 0 chr5 32945221 32945283 -170140249 - L2 LINE L2 -453 2861 2800 234 263 18 0 chr5 32945355 32945412 -170140120 + (TG)n Simple_repeat Simple_repeat 2 59 0 292 314 99 70 chr5 32945426 32945676 -170139856 - L2 LINE L2 -610 2704 2463 453 206 88 0 chr5 32945676 32945778 -170139754 + MER81 DNA DNA 2 112 -2 292 314 99 70 chr5 32945778 32946001 -170139531 - L2 LINE L2 -851 2463 2217 2421 53 13 3 chr5 32947448 32947750 -170137782 - AluSp SINE Alu -8 305 1 28 29 0 0 chr5 32947758 32947793 -170137739 + AT_rich Low_complexity Low_complexity 1 35 0 1466 188 14 3 chr5 32947841 32948134 -170137398 - AluSx SINE Alu -16 296 1 1120 167 155 4 chr5 32948704 32948943 -170136589 - AluJb SINE Alu -15 297 23 543 297 139 32 chr5 32950879 32950994 -170134538 + L3 LINE CR1 810 911 -666 1853 152 7 0 chr5 32950994 32951296 -170134236 + AluJb SINE Alu 1 304 -8 543 297 139 32 chr5 32951296 32951611 -170133921 + L3 LINE CR1 911 1286 -291 1951 113 0 11 chr5 32952514 32952820 -170132712 + AluSx SINE Alu 1 303 0 1442 111 69 5 chr5 32953632 32953848 -170131684 - MER30 DNA MER1_type 0 230 1 201 179 26 0 chr5 32953976 32954015 -170131517 + CT-rich Low_complexity Low_complexity 2 41 0 1849 117 0 0 chr5 32954377 32954634 -170130898 + AluSg SINE Alu 39 295 -15 361 305 67 12 chr5 32955141 32955305 -170130227 - L3 LINE CR1 -341 1236 1064 1628 149 0 71 chr5 32955581 32955750 -170129782 - AluJb SINE Alu -13 299 162 1518 166 18 7 chr5 32955750 32956034 -170129498 - AluSx SINE Alu -6 306 20 1628 149 0 71 chr5 32956034 32956186 -170129346 - AluJb SINE Alu -150 162 1 193 140 0 40 chr5 32956700 32956750 -170128782 + (GGGAGA)n Simple_repeat Simple_repeat 2 49 0 769 128 112 0 chr5 32957371 32957496 -170128036 + MER30 DNA MER1_type 92 230 0 1039 153 0 0 chr5 32958015 32958185 -170127347 + FRAM SINE Alu 1 169 -7 2227 109 3 0 chr5 32959147 32959459 -170126073 - AluSp SINE Alu 0 313 1 2140 161 0 12 chr5 32959490 32959831 -170125701 + MER1B DNA MER1_type 1 337 -2 292 70 42 28 chr5 32961323 32961394 -170124138 + (CA)n Simple_repeat Simple_repeat 1 72 0 2236 118 0 0 chr5 32961550 32961863 -170123669 - AluSq SINE Alu 0 313 1 1651 173 3 19 chr5 32962156 32962463 -170123069 + AluJb SINE Alu 1 302 -10 291 311 11 11 chr5 32962467 32962557 -170122975 - MIR SINE MIR -150 112 23 350 260 82 61 chr5 32963327 32963523 -170122009 - L1ME4a LINE L1 -6 6115 5916 530 281 45 49 chr5 32963548 32963716 -170121816 + MIR SINE MIR 30 198 -64 2255 88 3 0 chr5 32963716 32964013 -170121519 + AluSx SINE Alu 1 298 -14 530 281 45 49 chr5 32964013 32964068 -170121464 + MIR SINE MIR 198 252 -10 1265 177 6 82 chr5 32964209 32964525 -170121007 - AluJo SINE Alu -12 300 9 1482 145 0 0 chr5 32964538 32964765 -170120767 - AluSx SINE Alu -4 306 80 2441 52 0 10 chr5 32964765 32965074 -170120458 - AluY SINE Alu -4 307 1 544 194 0 0 chr5 32965075 32965168 -170120364 - AluSx SINE Alu -219 94 2 855 117 0 8 chr5 32965864 32965992 -170119540 + FLAM_C SINE Alu 1 127 -16 324 0 0 0 chr5 32965993 32966029 -170119503 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1978 95 46 16 chr5 32966137 32966441 -170119091 - AluSq SINE Alu 0 313 1 2036 101 3 35 chr5 32966909 32967227 -170118305 + AluSg SINE Alu 3 310 0 1798 131 10 27 chr5 32967290 32967588 -170117944 + AluJo SINE Alu 1 293 -19 2133 99 26 0 chr5 32967654 32967956 -170117576 + AluSx SINE Alu 1 310 -2 2114 101 0 23 chr5 32968557 32968885 -170116647 + AluSx SINE Alu 1 321 0 1846 134 0 34 chr5 32969050 32969348 -170116184 + AluJb SINE Alu 1 288 -24 593 197 0 73 chr5 32969665 32969802 -170115730 + MER91B DNA MER1_type 2 128 -62 2079 109 0 13 chr5 32970228 32970531 -170115001 - AluSx SINE Alu -13 299 1 44 70 0 0 chr5 32970643 32970729 -170114803 + AT_rich Low_complexity Low_complexity 1 86 0 371 260 144 42 chr5 32970772 32971229 -170114303 - L1ME4a LINE L1 -3 6118 5615 1590 100 30 4 chr5 32972550 32972780 -170112752 - AluSc SINE Alu -2 307 72 2324 86 0 0 chr5 32972783 32973085 -170112447 - AluSx SINE Alu -10 302 1 1836 128 0 26 chr5 32973091 32973395 -170112137 - AluJo SINE Alu -16 296 1 270 273 116 51 chr5 32974611 32974827 -170110705 + L2 LINE L2 3028 3257 -56 1933 135 0 10 chr5 32974998 32975310 -170110222 + AluSx SINE Alu 1 309 -3 295 277 0 0 chr5 32975737 32975802 -170109730 - MIR3 SINE MIR -9 199 135 183 217 200 17 chr5 32976073 32976133 -170109399 + MER5A DNA MER1_type 113 183 -6 1992 116 3 7 chr5 32976983 32977275 -170108257 - AluJo SINE Alu -10 302 12 335 250 12 0 chr5 32977326 32977406 -170108126 + Charlie7 DNA MER1_type 1 81 -2531 207 100 0 0 chr5 32977873 32977903 -170107629 + (TA)n Simple_repeat Simple_repeat 2 31 0 562 109 0 43 chr5 32977903 32977995 -170107537 - AluSg SINE Alu -9 303 216 1083 105 0 20 chr5 32977995 32978148 -170107384 - AluSg SINE Alu -160 150 1 2257 92 7 3 chr5 32978485 32978788 -170106744 - AluSx SINE Alu -8 304 1 21 0 0 0 chr5 32978895 32978916 -170106616 + AT_rich Low_complexity Low_complexity 1 21 0 1831 103 9 97 chr5 32979098 32979437 -170106095 - AluSq SINE Alu -4 309 1 255 268 24 41 chr5 32979708 32979831 -170105701 - MER117 DNA MER1_type -31 166 46 196 207 69 138 chr5 32979888 32979975 -170105557 - L2 LINE L2 -46 3267 3187 1930 110 9 55 chr5 32980019 32980346 -170105186 - AluSx SINE Alu 0 312 1 257 330 69 56 chr5 32980638 32980871 -170104661 - L2 LINE L2 -523 2791 2556 3493 178 50 2 chr5 32981622 32982240 -170103292 + Tigger7 DNA MER2_type 3 650 -1837 2265 132 0 0 chr5 32982240 32982551 -170102981 + AluSx SINE Alu 1 311 -1 961 204 52 0 chr5 32982625 32982816 -170102716 - MER58A DNA MER1_type -23 201 1 191 114 29 0 chr5 32982970 32983005 -170102527 + GA-rich Low_complexity Low_complexity 4 39 0 2378 93 3 6 chr5 32983083 32983394 -170102138 + AluSp SINE Alu 1 310 -3 1117 205 19 0 chr5 32983399 32983609 -170101923 + MLT1A1 LTR MaLR 149 362 -3 479 65 0 0 chr5 32983714 32983776 -170101756 - Alu SINE Alu -255 63 2 24 53 0 0 chr5 32983949 32983987 -170101545 + AT_rich Low_complexity Low_complexity 1 38 0 267 269 0 15 chr5 32984254 32984321 -170101211 - MER94 DNA DNA -5 129 64 1767 170 3 3 chr5 32984337 32984619 -170100913 - AluJo SINE Alu -26 286 5 393 216 14 0 chr5 32984626 32984700 -170100832 - MER94 DNA DNA -59 75 1 305 27 68 27 chr5 32985005 32985078 -170100454 + (CA)n Simple_repeat Simple_repeat 2 77 0 598 42 90 12 chr5 32985090 32985257 -170100275 + (CA)n Simple_repeat Simple_repeat 1 180 0 2427 72 0 0 chr5 32986119 32986410 -170099122 + AluY SINE Alu 1 291 -20 1255 151 5 15 chr5 32986604 32986809 -170098723 + MER2 DNA MER2_type 1 203 -142 1094 44 15 0 chr5 32986820 32986957 -170098575 - SVA Other Other 0 1386 1248 365 278 56 31 chr5 32988039 32988201 -170097331 + MIR SINE MIR 30 195 -67 1876 103 4 11 chr5 32988207 32988468 -170097064 + AluSx SINE Alu 1 259 -53 1912 117 27 24 chr5 32989595 32989893 -170095639 - AluSc SINE Alu -10 299 1 22 35 0 0 chr5 32989963 32989992 -170095540 + AT_rich Low_complexity Low_complexity 1 29 0 224 261 14 14 chr5 32990199 32990273 -170095259 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 21 36 0 0 chr5 32990333 32990361 -170095171 + AT_rich Low_complexity Low_complexity 1 28 0 2140 127 0 3 chr5 32990403 32990710 -170094822 - AluSx SINE Alu -6 306 1 716 245 70 54 chr5 32990783 32990931 -170094601 + L1ME3A LINE L1 5139 5283 -881 2310 98 14 0 chr5 32990931 32991227 -170094305 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr5 32991231 32991253 -170094279 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 716 245 70 54 chr5 32991253 32991511 -170094021 + L1ME3A LINE L1 5285 5546 -618 593 239 62 0 chr5 32991634 32991764 -170093768 + MER58C DNA MER1_type 34 171 -44 1520 217 66 48 chr5 32991792 32992289 -170093243 + L1ME3A LINE L1 5650 6165 -2 285 200 17 0 chr5 32993715 32993775 -170091757 - MIR SINE MIR -118 144 84 2250 103 10 0 chr5 32994109 32994401 -170091131 - AluSx SINE Alu -17 295 1 1619 159 19 30 chr5 32994721 32995023 -170090509 + AluJo SINE Alu 14 312 0 793 194 133 0 chr5 32995038 32995218 -170090314 + MER3 DNA MER1_type 6 209 0 277 200 0 0 chr5 32995176 32995226 -170090306 - MER3 DNA MER1_type -120 89 40 * 2240 104 0 0 chr5 32996327 32996615 -170088917 - AluSx SINE Alu -23 289 2 186 43 0 0 chr5 32996955 32996978 -170088554 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 902 229 0 0 chr5 32996979 32997145 -170088387 - FRAM SINE Alu 0 166 1 404 171 0 0 chr5 32997616 32997692 -170087840 - MER116 DNA Mariner -4 76 1 338 253 30 10 chr5 32998188 32998287 -170087245 + MIR SINE MIR 113 213 -49 2207 134 0 10 chr5 32998483 32998797 -170086735 - AluJb SINE Alu -1 311 1 23 54 0 0 chr5 32998915 32998952 -170086580 + AT_rich Low_complexity Low_complexity 1 37 0 212 310 53 26 chr5 32999040 32999153 -170086379 - MIR SINE MIR -119 143 28 1796 159 18 0 chr5 32999392 32999669 -170085863 - AluJo SINE Alu -30 282 1 1999 133 0 33 chr5 33000979 33001280 -170084252 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr5 33002532 33002555 -170082977 + AT_rich Low_complexity Low_complexity 1 23 0 2418 85 0 10 chr5 33002559 33002864 -170082668 + AluSq SINE Alu 1 302 -11 247 198 302 8 chr5 33004765 33004891 -170080641 + MIR SINE MIR 82 244 -18 201 330 64 18 chr5 33005557 33005666 -170079866 + MIR3 SINE MIR 77 190 -18 22 0 0 0 chr5 33005739 33005761 -170079771 + AT_rich Low_complexity Low_complexity 1 22 0 793 178 0 0 chr5 33005803 33005921 -170079611 + FLAM_C SINE Alu 1 118 -15 641 148 96 26 chr5 33006114 33006229 -170079303 - FLAM_C SINE Alu -16 127 5 2185 127 0 0 chr5 33006566 33006865 -170078667 - AluJb SINE Alu -13 299 1 1954 118 40 0 chr5 33007199 33007520 -170078012 - AluSx SINE Alu 0 332 1 254 254 30 15 chr5 33007810 33007877 -170077655 - L2 LINE L2 -4 3268 3201 337 309 35 50 chr5 33008141 33008342 -170077190 - L3 LINE CR1 -555 1022 825 2315 109 0 3 chr5 33008425 33008729 -170076803 - AluSx SINE Alu -9 303 1 2067 128 7 0 chr5 33008875 33009172 -170076360 + AluSx SINE Alu 4 302 -10 2053 133 7 3 chr5 33009202 33009502 -170076030 + AluSx SINE Alu 1 301 -11 2130 96 7 4 chr5 33009927 33010208 -170075324 + AluSq SINE Alu 1 282 -31 252 0 0 0 chr5 33010209 33010237 -170075295 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 2025 133 3 11 chr5 33010245 33010531 -170075001 + AluSx SINE Alu 1 284 -28 1322 213 75 22 chr5 33012009 33012437 -170073095 + L1MC4 LINE L1 7050 7526 -297 2243 117 0 13 chr5 33012742 33013051 -170072481 + AluSg SINE Alu 2 306 -4 833 176 63 31 chr5 33013053 33013212 -170072320 + AluJo/FRAM SINE Alu 131 294 -18 2069 123 0 13 chr5 33013369 33013670 -170071862 + AluSx SINE Alu 5 301 -11 251 282 39 0 chr5 33013758 33013836 -170071696 + L2 LINE L2 3191 3271 -1 2130 106 27 3 chr5 33014602 33014894 -170070638 + AluSx SINE Alu 1 299 -13 1494 106 0 37 chr5 33015582 33015827 -170069705 + AluSg/x SINE Alu 68 303 -9 313 313 35 50 chr5 33015910 33016111 -170069421 + L3 LINE CR1 825 1022 -555 254 254 30 15 chr5 33016375 33016442 -170069090 + L2 LINE L2 3201 3268 -4 1926 108 52 7 chr5 33016732 33017020 -170068512 + AluSx SINE Alu 1 301 -11 862 173 13 0 chr5 33017020 33017176 -170068356 + AluJo/FRAM SINE Alu 135 292 -20 331 144 22 122 chr5 33017177 33017267 -170068265 - L1MB7 LINE L1 -57 6127 6047 429 83 0 17 chr5 33017644 33017741 -170067791 + AluSp/q SINE Alu 226 321 0 2072 126 13 3 chr5 33017769 33018078 -170067454 - AluSq SINE Alu -1 312 1 1991 144 0 3 chr5 33018316 33018615 -170066917 - AluJo SINE Alu -14 298 1 183 80 0 0 chr5 33018727 33018752 -170066780 + (CA)n Simple_repeat Simple_repeat 1 25 0 2473 76 0 16 chr5 33019064 33019381 -170066151 - AluSx SINE Alu 0 312 1 2464 96 0 0 chr5 33020851 33021164 -170064368 - AluSq SINE Alu 0 313 1 216 0 0 0 chr5 33021511 33021535 -170063997 + (A)n Simple_repeat Simple_repeat 1 24 0 700 228 91 121 chr5 33021544 33022017 -170063515 - LTR40a LTR ERVL -60 459 1 774 241 131 24 chr5 33024681 33024971 -170060561 - HAL1 LINE L1 -2183 324 4 380 225 142 8 chr5 33025000 33025120 -170060412 - MIR SINE MIR -118 144 9 298 79 0 0 chr5 33025272 33025310 -170060222 - U2 snRNA snRNA -150 38 1 2196 115 3 0 chr5 33025864 33026159 -170059373 - AluSx SINE Alu -16 296 1 2038 133 17 7 chr5 33026595 33026896 -170058636 - AluSx SINE Alu -8 304 1 1900 100 0 0 chr5 33027501 33027741 -170057791 - AluSx SINE Alu -12 300 61 673 157 0 60 chr5 33027742 33027876 -170057656 - FLAM_A SINE Alu -7 126 1 1786 80 59 80 chr5 33028166 33028487 -170057045 - AluY SINE Alu 0 315 1 198 317 12 37 chr5 33029053 33029135 -170056397 + MIR SINE MIR 20 99 -109 2331 95 0 7 chr5 33030082 33030377 -170055155 - AluSg SINE Alu -16 294 2 643 192 45 124 chr5 33030380 33030485 -170055047 + ORSL DNA AcHobo 31 143 -132 2190 108 3 29 chr5 33030485 33030799 -170054733 + AluSc SINE Alu 1 306 -3 643 192 45 124 chr5 33030799 33030959 -170054573 + ORSL DNA AcHobo 143 275 0 312 303 115 46 chr5 33030992 33031210 -170054322 + MIR SINE MIR 20 252 -10 5892 94 46 27 chr5 33031326 33034077 -170051455 + SVA Other Other 12 1369 -17 261 0 0 0 chr5 33034083 33034112 -170051420 + (CAA)n Simple_repeat Simple_repeat 2 30 0 186 103 0 0 chr5 33034133 33034162 -170051370 + (A)n Simple_repeat Simple_repeat 1 29 0 897 28 0 0 chr5 33034170 33034277 -170051255 + AluY SINE Alu 2 108 -203 1774 64 0 30 chr5 33034277 33034510 -170051022 + AluY SINE Alu 69 294 -17 2139 98 3 35 chr5 33034515 33034830 -170050702 + AluSx SINE Alu 1 305 -7 237 303 124 0 chr5 33035151 33035240 -170050292 - MIR3 SINE MIR -32 176 77 364 298 58 0 chr5 33035574 33035695 -170049837 + MIR SINE MIR 20 147 -61 1906 151 3 0 chr5 33035856 33036160 -170049372 - AluSq SINE Alu -8 305 1 2079 117 0 0 chr5 33036280 33036571 -170048961 + AluSq SINE Alu 1 291 -22 1952 117 3 29 chr5 33037652 33037959 -170047573 - AluSc SINE Alu -10 299 1 22 35 0 0 chr5 33038029 33038058 -170047474 + AT_rich Low_complexity Low_complexity 1 29 0 224 261 14 14 chr5 33038264 33038338 -170047194 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 21 36 0 0 chr5 33038398 33038426 -170047106 + AT_rich Low_complexity Low_complexity 1 28 0 1819 154 3 3 chr5 33038468 33038774 -170046758 - AluSx SINE Alu -6 306 1 708 245 70 54 chr5 33038844 33038992 -170046540 + L1ME3A LINE L1 5139 5283 -879 2180 98 14 0 chr5 33038992 33039288 -170046244 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr5 33039292 33039314 -170046218 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 708 245 70 54 chr5 33039314 33039572 -170045960 + L1ME3A LINE L1 5285 5546 -616 604 231 62 0 chr5 33039695 33039825 -170045707 + MER58C DNA MER1_type 34 171 -44 1503 218 66 48 chr5 33039853 33040350 -170045182 + L1ME3A LINE L1 5650 6165 -2 316 216 54 0 chr5 33041768 33041842 -170043690 - MIR SINE MIR -108 154 77 2123 103 10 0 chr5 33042169 33042461 -170043071 - AluSx SINE Alu -17 295 1 1512 159 19 30 chr5 33042780 33043082 -170042450 + AluJo SINE Alu 14 312 0 786 194 133 0 chr5 33043097 33043277 -170042255 + MER3 DNA MER1_type 6 209 0 280 200 0 0 chr5 33043235 33043285 -170042247 - MER3 DNA MER1_type -120 89 40 * 2117 104 0 0 chr5 33044386 33044674 -170040858 - AluSx SINE Alu -23 289 2 186 43 0 0 chr5 33045014 33045037 -170040495 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 909 229 0 0 chr5 33045038 33045204 -170040328 - FRAM SINE Alu 0 166 1 401 171 0 0 chr5 33045675 33045751 -170039781 - MER116 DNA Mariner -4 76 1 390 242 58 25 chr5 33046230 33046350 -170039182 + MIR SINE MIR 94 217 -45 2079 134 0 10 chr5 33046541 33046855 -170038677 - AluJb SINE Alu -1 311 1 23 54 0 0 chr5 33046973 33047010 -170038522 + AT_rich Low_complexity Low_complexity 1 37 0 257 343 37 22 chr5 33047098 33047232 -170038300 - MIR SINE MIR -119 143 8 1680 159 18 0 chr5 33047450 33047727 -170037805 - AluJo SINE Alu -30 282 1 1875 133 0 33 chr5 33049037 33049338 -170036194 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr5 33050586 33050609 -170034923 + AT_rich Low_complexity Low_complexity 1 23 0 2273 85 0 16 chr5 33050613 33050920 -170034612 + AluSq SINE Alu 1 302 -11 296 218 245 20 chr5 33052831 33052978 -170032554 + MIR SINE MIR 82 261 -1 242 330 64 18 chr5 33053624 33053733 -170031799 + MIR3 SINE MIR 77 190 -18 797 178 0 0 chr5 33053870 33053988 -170031544 + FLAM_C SINE Alu 1 118 -15 645 148 96 26 chr5 33054181 33054296 -170031236 - FLAM_C SINE Alu -16 127 5 2073 127 0 0 chr5 33054633 33054933 -170030599 - AluJb SINE Alu -12 300 1 1823 118 40 0 chr5 33055267 33055573 -170029959 - AluSx SINE Alu 0 317 1 283 254 30 15 chr5 33055863 33055930 -170029602 - L2 LINE L2 -4 3268 3201 404 311 29 62 chr5 33056194 33056438 -170029094 - L3 LINE CR1 -555 1022 787 2186 109 0 3 chr5 33056478 33056782 -170028750 - AluSx SINE Alu -9 303 1 2016 133 0 0 chr5 33056925 33057227 -170028305 + AluSx SINE Alu 1 302 -10 1928 133 7 3 chr5 33057257 33057557 -170027975 + AluSx SINE Alu 1 301 -11 2009 96 7 4 chr5 33057982 33058263 -170027269 + AluSq SINE Alu 1 282 -31 216 0 0 0 chr5 33058264 33058288 -170027244 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 1879 136 3 11 chr5 33058296 33058582 -170026950 + AluSx SINE Alu 1 284 -28 1800 213 97 18 chr5 33060061 33060558 -170024974 + L1MC4 LINE L1 7129 7664 -378 288 312 13 0 chr5 33060760 33060837 -170024695 - MER5C DNA MER1_type -245 79 2 1000 215 40 15 chr5 33060917 33061070 -170024462 + L1MC4 LINE L1 7759 7924 -118 186 103 0 0 chr5 33061070 33061099 -170024433 + (TG)n Simple_repeat Simple_repeat 2 30 0 1000 215 40 15 chr5 33061099 33061219 -170024313 + L1MC4 LINE L1 7924 8039 -3 2192 101 7 0 chr5 33061222 33061520 -170024012 + AluSg SINE Alu 1 300 -10 1763 101 90 0 chr5 33062949 33063216 -170022316 + AluSp SINE Alu 1 291 -22 1876 90 0 0 chr5 33064684 33064929 -170020603 + AluSx SINE Alu 1 245 -67 2223 94 0 3 chr5 33067048 33067347 -170018185 - AluSx SINE Alu -14 298 1 198 288 119 34 chr5 33067458 33067576 -170017956 + MIR SINE MIR 2 129 -133 277 240 40 40 chr5 33067611 33067686 -170017846 + L1ME4a LINE L1 5974 6048 -73 2284 101 0 0 chr5 33068239 33068547 -170016985 + AluSx SINE Alu 1 308 -4 21 57 0 0 chr5 33068585 33068620 -170016912 + AT_rich Low_complexity Low_complexity 1 35 0 674 153 8 17 chr5 33068850 33068968 -170016564 - L1MB5 LINE L1 -3 6171 6055 259 275 135 39 chr5 33069373 33069595 -170015937 - MIR SINE MIR 0 262 17 2278 99 0 0 chr5 33069908 33070221 -170015311 + AluSq SINE Alu 1 313 0 2134 115 0 13 chr5 33070595 33070907 -170014625 + AluSg SINE Alu 2 309 -1 837 203 63 6 chr5 33070909 33071067 -170014465 + AluJo/FRAM SINE Alu 131 297 -15 2046 116 3 13 chr5 33071224 33071535 -170013997 + AluSx SINE Alu 5 312 0 2277 79 0 13 chr5 33071772 33072077 -170013455 + AluSq SINE Alu 1 301 -12 2404 72 0 3 chr5 33072314 33072620 -170012912 + AluY SINE Alu 1 305 -6 2985 71 8 5 chr5 33072948 33073342 -170012190 + L1PA10 LINE L1 5771 6165 -3 225 0 0 0 chr5 33073967 33073992 -170011540 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 2050 77 15 4 chr5 33073994 33074267 -170011265 - AluY SINE Alu -34 277 2 2206 103 0 0 chr5 33074272 33074573 -170010959 - AluSx SINE Alu -11 301 1 292 304 232 14 chr5 33074673 33074880 -170010652 + MIR SINE MIR 9 260 -2 307 214 31 51 chr5 33074911 33075009 -170010523 + L1MC4 LINE L1 6614 6709 -1333 262 246 70 53 chr5 33075250 33075421 -170010111 - L1ME4a LINE L1 -7 6114 5941 2081 100 0 17 chr5 33075930 33076230 -170009302 - AluSx SINE Alu -17 295 1 550 250 78 39 chr5 33076521 33076725 -170008807 + MIR SINE MIR 10 221 -41 2108 110 17 0 chr5 33077201 33077501 -170008031 - AluSx SINE Alu -7 305 1 1103 149 26 0 chr5 33077507 33077702 -170007830 - L1MA6 LINE L1 0 6300 6101 2251 88 3 3 chr5 33077702 33077996 -170007536 - AluSx SINE Alu -18 294 1 869 167 28 39 chr5 33078032 33078212 -170007320 - L1 LINE L1 -1439 4707 4530 505 96 27 0 chr5 33078653 33078726 -170006806 - L1MA6 LINE L1 -75 6225 6151 2041 86 0 47 chr5 33078912 33079242 -170006290 - AluSq SINE Alu 0 316 1 1159 175 51 27 chr5 33083453 33083533 -170001999 - L1MD3 LINE L1 -1 7994 7917 2607 66 0 0 chr5 33083533 33083836 -170001696 - AluSg SINE Alu -7 303 1 1159 175 51 27 chr5 33083836 33084012 -170001520 - L1MD3 LINE L1 -78 7917 7732 2284 107 0 0 chr5 33084245 33084543 -170000989 + AluSx SINE Alu 1 298 -14 2226 108 3 0 chr5 33084543 33084838 -170000694 + AluSx SINE Alu 1 296 -16 2471 174 5 18 chr5 33085712 33085949 -169999583 - Tigger2a DNA MER2_type -2276 432 202 2070 148 0 7 chr5 33085949 33086246 -169999286 + AluSx SINE Alu 1 295 -17 2471 174 5 18 chr5 33086246 33086446 -169999086 - Tigger2a DNA MER2_type -2506 202 1 1294 147 15 79 chr5 33086881 33087146 -169998386 + AluJo SINE Alu 51 298 -14 2328 72 0 34 chr5 33087972 33088293 -169997239 - AluY SINE Alu 0 311 2 2213 100 0 7 chr5 33088580 33088870 -169996662 - AluSx SINE Alu -24 288 1 1994 145 34 0 chr5 33089081 33089377 -169996155 - AluJb SINE Alu -6 306 1 2083 93 55 14 chr5 33090223 33090512 -169995020 + AluSx SINE Alu 1 301 -11 414 259 88 0 chr5 33092220 33092367 -169993165 + MER5B DNA MER1_type 19 178 0 669 230 126 0 chr5 33093636 33093810 -169991722 - MIR SINE MIR -59 203 8 441 204 150 26 chr5 33095055 33095168 -169990364 + FLAM_A SINE Alu 1 127 -6 254 273 40 10 chr5 33095359 33095458 -169990074 + L1MEc LINE L1 1259 1360 -5036 185 0 40 0 chr5 33095493 33095518 -169990014 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 928 174 7 0 chr5 33095527 33095682 -169989850 + FRAM SINE Alu 5 160 -16 261 239 206 43 chr5 33095699 33095908 -169989624 + HAL1 LINE L1 1404 1646 -861 537 133 0 0 chr5 33096378 33096453 -169989079 + AluS SINE Alu 2 76 -237 732 158 17 0 chr5 33096614 33096734 -169988798 - AluSg/x SINE Alu -18 292 171 1833 107 23 4 chr5 33096735 33096998 -169988534 + AluSx SINE Alu 44 311 -1 1901 156 7 0 chr5 33097105 33097394 -169988138 + AluJb SINE Alu 1 291 -21 225 0 0 0 chr5 33097394 33097419 -169988113 + (CAAT)n Simple_repeat Simple_repeat 1 25 0 279 305 88 25 chr5 33097419 33097737 -169987795 + L1ME LINE L1 5262 5599 -563 496 208 28 9 chr5 33098059 33098165 -169987367 - MLT1J LTR MaLR -3 508 401 3329 111 56 10 chr5 33098203 33098706 -169986826 - MER1A DNA MER1_type -1 526 1 363 274 9 44 chr5 33098732 33098845 -169986687 - MIR SINE MIR -70 192 84 1077 187 9 14 chr5 33099609 33099823 -169985709 + AluJo SINE Alu 86 298 -14 21 0 0 0 chr5 33102419 33102440 -169983092 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr5 33103133 33103161 -169982371 + AT_rich Low_complexity Low_complexity 1 28 0 2272 62 0 62 chr5 33103853 33104162 -169981370 + AluY SINE Alu 1 290 -21 499 161 0 0 chr5 33104703 33104790 -169980742 + AluS SINE Alu 2 88 -224 2523 64 3 0 chr5 33105202 33105499 -169980033 + AluSc SINE Alu 1 298 -11 240 347 60 0 chr5 33105749 33105899 -169979633 + L1M4 LINE L1 3729 3887 -2259 2230 89 4 4 chr5 33105923 33106204 -169979328 + AluSx SINE Alu 1 281 -31 767 125 75 0 chr5 33106374 33106494 -169979038 - FLAM_C SINE Alu -13 130 2 2420 87 0 0 chr5 33106667 33106967 -169978565 - AluY SINE Alu -11 300 1 2237 90 0 7 chr5 33106970 33107259 -169978273 - AluSc SINE Alu -14 295 9 354 299 105 36 chr5 33107370 33107704 -169977828 + L1M4 LINE L1 4454 4810 -1336 205 195 0 0 chr5 33107922 33107963 -169977569 + A-rich Low_complexity Low_complexity 2 42 0 302 0 26 0 chr5 33108173 33108211 -169977321 + (CA)n Simple_repeat Simple_repeat 2 40 0 1936 156 0 23 chr5 33108807 33109115 -169976417 + AluJo SINE Alu 1 301 -11 495 265 118 79 chr5 33109526 33109816 -169975716 + HAL1b LINE L1 222 499 -849 2279 89 3 3 chr5 33109816 33110108 -169975424 + AluSg SINE Alu 1 292 -18 495 265 118 79 chr5 33110108 33110409 -169975123 + HAL1b LINE L1 499 836 -512 1925 168 0 3 chr5 33110618 33110916 -169974616 + AluJo SINE Alu 1 297 -15 508 162 36 102 chr5 33110968 33111011 -169974521 - L1MB3 LINE L1 -2 6181 6137 2385 79 7 0 chr5 33111011 33111301 -169974231 - AluSg1 SINE Alu -17 292 1 508 162 36 102 chr5 33111301 33111384 -169974148 - L1MB3 LINE L1 -46 6137 6066 2248 121 0 0 chr5 33111384 33111682 -169973850 - AluSx SINE Alu -14 298 1 508 162 36 102 chr5 33111682 33111721 -169973811 - L1MB3 LINE L1 -117 6066 6026 2378 183 79 82 chr5 33111776 33112082 -169973450 + L1MC5 LINE L1 6649 6955 -1006 1697 165 57 20 chr5 33112082 33112488 -169973044 + L1MA7 LINE L1 5865 6285 -6 2378 183 79 82 chr5 33112488 33112692 -169972840 + L1MC5 LINE L1 6955 7158 -803 2185 104 0 26 chr5 33112692 33113000 -169972532 + AluSg SINE Alu 1 300 -10 2327 57 13 57 chr5 33113005 33113320 -169972212 + AluY SINE Alu 2 302 -9 2378 183 79 82 chr5 33113320 33113688 -169971844 + L1MC5 LINE L1 7162 7531 -430 301 265 43 60 chr5 33113724 33113841 -169971691 + L1ME3A LINE L1 5967 6081 -89 1740 136 123 7 chr5 33114313 33114614 -169970918 + MER1B DNA MER1_type 2 337 0 280 293 193 27 chr5 33114619 33114984 -169970548 + L1MC/D LINE L1 5491 5915 -321 666 219 58 13 chr5 33116710 33116865 -169968667 + MER58A DNA MER1_type 46 207 -17 533 181 145 7 chr5 33119502 33119640 -169965892 + L1ME4a LINE L1 5962 6118 -3 717 200 171 0 chr5 33119749 33119919 -169965613 - MER3 DNA MER1_type -3 206 8 1215 299 68 39 chr5 33120071 33120629 -169964903 + L1MEc LINE L1 109 696 -5700 2037 123 0 25 chr5 33120629 33120947 -169964585 + AluSq SINE Alu 1 310 -3 1215 299 68 39 chr5 33120947 33121141 -169964391 + L1MEc LINE L1 696 883 -5513 481 152 20 61 chr5 33121143 33121242 -169964290 + AluJ SINE Alu 85 179 -133 1592 89 9 22 chr5 33121243 33121467 -169964065 + AluSq SINE Alu 93 313 0 534 251 98 6 chr5 33121481 33121644 -169963888 + MIR SINE MIR 85 262 0 2428 78 0 0 chr5 33122099 33122392 -169963140 - AluY SINE Alu -18 293 1 603 110 110 0 chr5 33122561 33122661 -169962871 + AluJ SINE Alu 183 293 -19 311 357 14 21 chr5 33123025 33123165 -169962367 + L2 LINE L2 3134 3272 0 289 266 43 0 chr5 33123171 33123265 -169962267 + MIR SINE MIR 47 144 -118 298 167 106 15 chr5 33123267 33123333 -169962199 - LTR16A1 LTR ERVL -2 455 384 2217 86 3 80 chr5 33123664 33123811 -169961721 + AluSx SINE Alu 1 109 -203 2475 45 25 0 chr5 33123811 33124097 -169961435 + AluSp SINE Alu 2 294 -19 2217 86 3 80 chr5 33124097 33124285 -169961247 + AluSx SINE Alu 109 310 -2 810 221 55 3 chr5 33124457 33124650 -169960882 - MLT1F1 LTR MaLR -298 251 7 2516 60 0 3 chr5 33124765 33125063 -169960469 - AluY SINE Alu -14 297 1 1466 137 9 5 chr5 33126880 33127099 -169958433 + AluJb SINE Alu 87 306 -6 21 57 0 0 chr5 33127136 33127171 -169958361 + AT_rich Low_complexity Low_complexity 1 35 0 394 147 0 0 chr5 33127638 33127713 -169957819 + L1MB3 LINE L1 6108 6182 -1 24 32 0 0 chr5 33127799 33127830 -169957702 + AT_rich Low_complexity Low_complexity 1 31 0 334 235 221 7 chr5 33128462 33128598 -169956934 + Charlie7 DNA MER1_type 37 201 -2411 483 212 8 17 chr5 33128661 33128779 -169956753 + Charlie7 DNA MER1_type 329 445 -2167 21 36 0 0 chr5 33128982 33129010 -169956522 + AT_rich Low_complexity Low_complexity 1 28 0 970 191 35 111 chr5 33129010 33129134 -169956398 + AluJo SINE Alu 1 133 -169 1942 155 0 10 chr5 33129134 33129430 -169956102 - AluSx SINE Alu -19 293 1 970 191 35 111 chr5 33129430 33129620 -169955912 + AluJo SINE Alu 133 291 -11 484 143 66 11 chr5 33129646 33129737 -169955795 + HY3 scRNA scRNA 3 98 -3 1107 299 124 0 chr5 33129864 33130219 -169955313 + MLT1I LTR MaLR 7 405 -4 1765 166 28 0 chr5 33130805 33131094 -169954438 + AluSx SINE Alu 1 297 -15 2431 80 0 3 chr5 33131104 33131404 -169954128 + AluSq SINE Alu 1 299 -14 1025 174 135 0 chr5 33131554 33131761 -169953771 + MER46A DNA MER2_type 1 235 -1 2099 123 10 7 chr5 33131863 33132165 -169953367 - AluSp SINE Alu -10 303 1 2172 123 0 0 chr5 33132283 33132576 -169952956 + AluSq SINE Alu 1 293 -20 2265 117 0 0 chr5 33132807 33133105 -169952427 - AluSg SINE Alu -8 302 5 351 135 0 0 chr5 33133057 33133109 -169952423 - Alu SINE Alu -250 52 1 23 0 0 0 chr5 33133184 33133207 -169952325 + AT_rich Low_complexity Low_complexity 1 23 0 674 171 105 106 chr5 33133234 33133276 -169952256 - MER33 DNA MER1_type -2267 318 277 186 62 0 31 chr5 33133285 33133317 -169952215 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 1090 58 0 7 chr5 33133317 33133446 -169952086 - L1PA4 LINE L1 -8 6147 6003 674 171 105 106 chr5 33133446 33133756 -169951776 - MER33 DNA MER1_type -2308 277 1 1294 174 8 2 chr5 33134060 33134329 -169951203 - MER2 DNA MER2_type -24 321 2 209 310 103 41 chr5 33134355 33134500 -169951032 + L2 LINE L2 2599 2752 -562 474 246 161 0 chr5 33134653 33134877 -169950655 + HAL1 LINE L1 863 1122 -1385 396 229 124 67 chr5 33134923 33135129 -169950403 + HAL1 LINE L1 1258 1484 -1023 1138 181 110 79 chr5 33135129 33135281 -169950251 + AluJb SINE Alu 1 147 -155 1969 117 19 45 chr5 33135281 33135589 -169949943 + AluSx SINE Alu 1 300 -12 1138 181 110 79 chr5 33135589 33135728 -169949804 + AluJb SINE Alu 147 301 -1 396 229 124 67 chr5 33135728 33135788 -169949744 + HAL1 LINE L1 1484 1539 -968 2031 140 0 3 chr5 33135788 33136088 -169949444 + AluSx SINE Alu 1 299 -13 9073 21 4 272 chr5 33136484 33138369 -169947163 + SVA Other Other 7 1386 0 29 0 0 0 chr5 33138369 33138398 -169947134 + AT_rich Low_complexity Low_complexity 1 29 0 1348 196 16 8 chr5 33139235 33139490 -169946042 + AluJo SINE Alu 26 282 -30 2022 146 7 3 chr5 33140910 33141211 -169944321 + AluJb SINE Alu 1 302 -10 311 242 40 74 chr5 33141620 33141709 -169943823 + L1ME4a LINE L1 5822 5906 -215 1328 123 76 0 chr5 33141709 33141920 -169943612 + MER30 DNA MER1_type 4 230 0 311 242 40 74 chr5 33141920 33141979 -169943553 + L1ME4a LINE L1 5906 5965 -156 689 121 0 0 chr5 33142257 33142356 -169943176 + AluSc SINE Alu 205 303 -6 191 200 200 0 chr5 33142839 33142899 -169942633 + MIR SINE MIR 174 245 -17 463 268 189 25 chr5 33142929 33143209 -169942323 - MER102a DNA MER1_type -3 327 2 1297 121 16 5 chr5 33143394 33143411 -169942121 + AluSq SINE Alu 113 128 -185 2330 85 0 19 chr5 33143411 33143727 -169941805 + AluY SINE Alu 1 310 -1 1297 121 16 5 chr5 33143727 33143899 -169941633 + AluSq SINE Alu 128 304 -9 245 111 222 0 chr5 33144184 33144238 -169941294 + MLT1F1 LTR MaLR 502 567 0 822 198 88 10 chr5 33144238 33144430 -169941102 + L1MB8 LINE L1 5972 6178 0 1987 116 46 0 chr5 33144617 33144902 -169940630 + AluSx SINE Alu 1 298 -14 259 293 111 60 chr5 33144904 33145521 -169940011 + L1M4 LINE L1 4191 4869 -1277 1138 176 72 9 chr5 33145521 33145743 -169939789 - MER46A DNA MER2_type 0 236 1 259 293 111 60 chr5 33145743 33146014 -169939518 + L1M4 LINE L1 4869 5125 -1021 27 51 0 17 chr5 33146121 33146148 -169939384 + AT_rich Low_complexity Low_complexity 1 27 -31 1380 188 74 7 chr5 33146148 33146419 -169939113 + AluJo SINE Alu 1 289 -23 27 51 0 17 chr5 33146419 33146450 -169939082 + AT_rich Low_complexity Low_complexity 27 58 0 1920 141 55 69 chr5 33146613 33147031 -169938501 + L1MB3 LINE L1 5759 6170 -13 2339 101 0 0 chr5 33147031 33147328 -169938204 - AluSg SINE Alu -13 297 1 225 122 82 0 chr5 33147350 33147399 -169938133 + L1MC/D LINE L1 5423 5475 -2333 367 255 176 30 chr5 33148173 33148373 -169937159 - MIR SINE MIR -29 233 11 1643 141 177 3 chr5 33148444 33148749 -169936783 - MER46B DNA MER2_type 0 236 4 240 359 63 0 chr5 33149034 33149176 -169936356 - MIR SINE MIR -111 151 1 698 161 36 0 chr5 33149360 33149472 -169936060 + FRAM SINE Alu 43 158 -18 22 70 0 0 chr5 33149482 33149525 -169936007 + AT_rich Low_complexity Low_complexity 1 43 0 851 153 0 0 chr5 33149525 33149643 -169935889 - FLAM_C SINE Alu -25 118 1 250 316 92 0 chr5 33149822 33149898 -169935634 - L2 LINE L2 -2 3270 3188 2765 32 0 0 chr5 33150051 33150359 -169935173 + AluY SINE Alu 1 308 -3 1995 127 3 34 chr5 33150386 33150708 -169934824 + AluJo SINE Alu 1 312 0 2473 55 0 0 chr5 33151012 33151332 -169934200 + AluY SINE Alu 1 320 0 237 105 0 0 chr5 33151432 33151470 -169934062 + L1MA3 LINE L1 6267 6304 -1 2477 64 0 0 chr5 33151477 33151772 -169933760 + AluY SINE Alu 1 295 -16 2597 53 0 0 chr5 33152063 33152363 -169933169 + AluY SINE Alu 1 300 -11 1749 118 91 8 chr5 33152660 33152923 -169932609 + AluSg SINE Alu 1 285 -25 21 0 0 0 chr5 33152930 33152951 -169932581 + AT_rich Low_complexity Low_complexity 1 21 0 540 224 73 44 chr5 33153505 33153662 -169931870 - MER106B DNA MER1_type 0 1059 908 2369 63 3 10 chr5 33153662 33153961 -169931571 - AluY SINE Alu -14 297 1 540 224 73 44 chr5 33153961 33154041 -169931491 - MER106B DNA MER1_type -151 908 2 29 47 0 0 chr5 33154095 33154138 -169931394 + AT_rich Low_complexity Low_complexity 1 43 0 2159 126 7 0 chr5 33154164 33154465 -169931067 - AluSx SINE Alu -6 306 4 2147 133 0 0 chr5 33154569 33154870 -169930662 + AluSx SINE Alu 1 301 -11 270 269 39 0 chr5 33154958 33155036 -169930496 + L2 LINE L2 3191 3271 -1 2075 121 31 0 chr5 33155803 33156092 -169929440 + AluSq SINE Alu 1 298 -15 2385 108 0 0 chr5 33156435 33156742 -169928790 - AluSq SINE Alu -6 307 1 1803 141 27 37 chr5 33156939 33157236 -169928296 + AluJo SINE Alu 1 294 -18 236 200 235 0 chr5 33157545 33157630 -169927902 - MARNA DNA Mariner -62 524 420 862 119 13 50 chr5 33158106 33158265 -169927267 + FRAM SINE Alu 1 40 0 1869 137 3 31 chr5 33158265 33158557 -169926975 + AluJb SINE Alu 4 287 -25 268 306 38 25 chr5 33158791 33158951 -169926581 + MARNA DNA Mariner 302 463 -123 24 67 0 0 chr5 33159368 33159413 -169926119 + AT_rich Low_complexity Low_complexity 1 45 0 544 191 296 32 chr5 33159420 33159640 -169925892 + L1ME3A LINE L1 5810 6087 -83 563 158 105 18 chr5 33159939 33160053 -169925479 + FLAM_A SINE Alu 5 128 -5 1494 93 69 5 chr5 33160452 33160668 -169924864 + MER30 DNA MER1_type 1 230 0 2334 92 0 3 chr5 33160936 33161242 -169924290 + AluSx SINE Alu 1 305 -7 2298 94 0 7 chr5 33161683 33161992 -169923540 + AluSc SINE Alu 1 307 -2 1078 65 79 0 chr5 33161992 33162131 -169923401 + AluSp SINE Alu 134 283 -30 42 20 0 0 chr5 33163028 33163077 -169922455 + GC_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr5 33163202 33163227 -169922305 + GC_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr5 33164511 33164536 -169920996 + AT_rich Low_complexity Low_complexity 1 25 0 2647 43 3 0 chr5 33164760 33165064 -169920468 - AluY SINE Alu -6 305 1 1086 152 11 0 chr5 33165168 33165346 -169920186 + FRAM SINE Alu 1 172 -4 2614 40 0 0 chr5 33165348 33165644 -169919888 + AluY SINE Alu 1 296 -15 810 221 55 3 chr5 33165759 33165952 -169919580 + MLT1F1 LTR MaLR 7 251 -298 2140 81 3 50 chr5 33166126 33166298 -169919234 - AluSx SINE Alu 0 307 128 219 36 0 0 chr5 33166298 33166326 -169919206 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2394 44 25 0 chr5 33166326 33166601 -169918931 - AluSp SINE Alu -30 283 2 2140 81 3 50 chr5 33166601 33166748 -169918784 - AluSx SINE Alu -177 130 1 298 167 106 15 chr5 33167079 33167145 -169918387 + LTR16A1 LTR ERVL 384 455 -2 331 234 43 0 chr5 33167147 33167241 -169918291 - MIR SINE MIR -118 144 47 311 357 14 21 chr5 33167247 33167387 -169918145 - L2 LINE L2 0 3272 3134 1737 120 51 55 chr5 33167754 33168046 -169917486 - AluJb SINE Alu -21 291 1 394 314 119 31 chr5 33168219 33168537 -169916995 - L2 LINE L2 -694 2620 2275 2345 92 0 19 chr5 33168546 33168861 -169916671 - AluSc SINE Alu 0 309 1 3344 183 57 28 chr5 33169005 33169248 -169916284 - L1MD2 LINE L1 -23 6336 6102 1869 154 13 19 chr5 33169248 33169560 -169915972 + AluJo SINE Alu 1 310 -2 3344 183 57 28 chr5 33169560 33169945 -169915587 - L1MD2 LINE L1 -257 6102 5682 2171 115 3 0 chr5 33169945 33170259 -169915273 - AluSx SINE Alu 0 312 1 3344 183 57 28 chr5 33170259 33170349 -169915183 - L1MD2 LINE L1 -677 5682 5596 363 135 0 0 chr5 33170415 33170467 -169915065 - L1MD2 LINE L1 -767 5592 5541 1504 103 42 0 chr5 33170615 33170829 -169914703 + MSTC LTR MaLR 1 223 -205 272 231 29 4 chr5 33170831 33170935 -169914597 - MIR SINE MIR -104 158 15 2055 218 77 61 chr5 33171138 33171305 -169914227 + MLT1E1 LTR MaLR 5 168 -486 2360 80 0 0 chr5 33171305 33171592 -169913940 + AluY SINE Alu 5 291 -20 2055 218 77 61 chr5 33171592 33171642 -169913890 + MLT1E1 LTR MaLR 168 216 -438 1779 163 108 44 chr5 33171642 33171697 -169913835 + MSTB1 LTR MaLR 1 51 -381 2060 142 0 22 chr5 33171697 33172014 -169913518 + AluJb SINE Alu 1 310 -2 1779 163 108 44 chr5 33172014 33172364 -169913168 + MSTB1 LTR MaLR 51 432 0 2055 218 77 61 chr5 33172364 33172770 -169912762 + MLT1E1 LTR MaLR 216 639 -15 380 220 110 0 chr5 33172770 33172888 -169912644 + L1MC4a LINE L1 2258 2388 -3758 2457 79 7 0 chr5 33172907 33173211 -169912321 - AluY SINE Alu -5 306 1 1359 179 38 60 chr5 33173212 33173472 -169912060 + L1MC4a LINE L1 4837 5101 -1045 2108 153 0 3 chr5 33173472 33173785 -169911747 - AluSx SINE Alu 0 312 1 1359 179 38 60 chr5 33173785 33173875 -169911657 + L1MC4a LINE L1 5101 5181 -965 2321 102 0 0 chr5 33173875 33174170 -169911362 + AluSg1 SINE Alu 1 295 -14 1359 179 38 60 chr5 33174170 33174186 -169911346 + L1MC4a LINE L1 5181 5196 -950 2299 125 0 0 chr5 33174194 33174506 -169911026 + AluSx SINE Alu 1 312 0 367 226 24 0 chr5 33174516 33174600 -169910932 + L1MC4a LINE L1 5171 5256 -890 2350 130 15 44 chr5 33174600 33174800 -169910732 + MSTB LTR MaLR 1 184 -242 2959 10 0 0 chr5 33174800 33175113 -169910419 + AluYb8 SINE Alu 1 313 -5 2350 130 15 44 chr5 33175113 33175320 -169910212 + MSTB LTR MaLR 184 396 -30 1086 172 0 20 chr5 33175321 33175519 -169910013 - AluJb SINE Alu -3 309 116 743 168 0 0 chr5 33175590 33175703 -169909829 + FLAM_C SINE Alu 21 133 -10 1942 129 17 20 chr5 33175868 33176162 -169909370 + AluJb SINE Alu 5 297 -15 2772 171 9 42 chr5 33176207 33176236 -169909296 + L1 LINE L1 4452 4480 -1666 2317 84 0 7 chr5 33176236 33176540 -169908992 - AluSg SINE Alu 0 302 1 1960 133 24 7 chr5 33176542 33176836 -169908696 - AluSx SINE Alu -13 299 1 2772 171 9 42 chr5 33176836 33177380 -169908152 + L1 LINE L1 4481 5010 -1136 248 219 62 0 chr5 33177383 33177447 -169908085 + L1MB7 LINE L1 6110 6177 -7 2132 122 3 0 chr5 33177991 33178286 -169907246 + AluSg SINE Alu 1 296 -14 2234 97 0 4 chr5 33178575 33178890 -169906642 - AluSx SINE Alu 0 318 5 2429 79 0 0 chr5 33179058 33179362 -169906170 + AluY SINE Alu 7 310 -1 1569 264 114 20 chr5 33179484 33179977 -169905555 - MLT1E LTR MaLR -52 541 3 2297 106 0 0 chr5 33180073 33180366 -169905166 - AluSx SINE Alu -19 293 1 860 249 175 25 chr5 33180424 33180818 -169904714 - MLT1H LTR MaLR -6 543 91 2273 120 0 0 chr5 33181042 33181351 -169904181 - AluSx SINE Alu -3 309 1 1698 271 56 4 chr5 33181401 33181866 -169903666 + L1MC4a LINE L1 5479 5967 -1841 2401 82 0 7 chr5 33181873 33182165 -169903367 - AluSg SINE Alu -20 290 1 24 67 0 0 chr5 33182319 33182364 -169903168 + AT_rich Low_complexity Low_complexity 1 45 0 2448 85 0 0 chr5 33182370 33182676 -169902856 - AluSc SINE Alu -3 306 1 908 142 49 59 chr5 33182688 33182918 -169902614 - L1MB8 LINE L1 -1 6183 5938 644 26 0 0 chr5 33183498 33183576 -169901956 - L1PA2 LINE L1 -3 6152 6075 2594 61 0 3 chr5 33184109 33184421 -169901111 + AluY SINE Alu 1 311 0 2478 94 0 0 chr5 33184817 33185125 -169900407 + AluSx SINE Alu 1 308 -4 361 235 20 0 chr5 33185301 33185399 -169900133 - L1MC4a LINE L1 -1897 5911 5812 299 196 0 0 chr5 33185401 33185452 -169900080 - L1PB4 LINE L1 -12 6144 6094 294 278 95 15 chr5 33185453 33185625 -169899907 - L1MB8 LINE L1 -477 5828 5638 1823 150 0 11 chr5 33185668 33185979 -169899553 - AluJb SINE Alu 0 308 1 2357 91 0 7 chr5 33186054 33186361 -169899171 - AluSx SINE Alu -7 305 1 2171 107 10 3 chr5 33186644 33186954 -169898578 + AluSx SINE Alu 1 312 0 2356 96 0 0 chr5 33187063 33187364 -169898168 - AluSq SINE Alu -12 301 1 22 0 0 0 chr5 33187547 33187569 -169897963 + AT_rich Low_complexity Low_complexity 1 22 0 2012 125 0 16 chr5 33187853 33188156 -169897376 - AluSx SINE Alu -12 300 3 240 35 0 0 chr5 33188649 33188678 -169896854 + (TG)n Simple_repeat Simple_repeat 2 30 0 2487 72 3 0 chr5 33188741 33189048 -169896484 - AluSx SINE Alu -4 308 1 416 119 13 0 chr5 33189159 33189235 -169896297 - L1P5 LINE L1 -703 5451 5375 269 234 0 16 chr5 33189230 33189294 -169896238 + L1ME4a LINE L1 5598 5660 -461 * 351 0 0 0 chr5 33189294 33189333 -169896199 + (CA)n Simple_repeat Simple_repeat 2 40 0 316 269 83 0 chr5 33189448 33189556 -169895976 + L1ME4a LINE L1 6003 6119 -2 409 217 5 13 chr5 33189689 33189779 -169895753 + L1MC4a LINE L1 6699 6776 -1032 438 128 51 0 chr5 33190984 33191062 -169894470 + AluJ/FRAM SINE Alu 231 312 0 280 227 0 30 chr5 33192263 33192329 -169893203 + MIR SINE MIR 127 190 -72 192 77 0 0 chr5 33193093 33193119 -169892413 + (A)n Simple_repeat Simple_repeat 1 26 0 1324 133 39 29 chr5 33193418 33193697 -169891835 - AluY SINE Alu -29 282 1 2548 241 65 16 chr5 33193697 33194554 -169890978 - L1MC4 LINE L1 -76 7966 7068 491 17 17 0 chr5 33194577 33194637 -169890895 - AluSc SINE Alu -14 295 235 1644 128 0 0 chr5 33194750 33194977 -169890555 - AluSx SINE Alu -85 227 1 243 224 0 52 chr5 33195422 33195480 -169890052 + MIR SINE MIR 28 82 -180 342 217 224 42 chr5 33195607 33195750 -169889782 + MIR SINE MIR 31 199 -63 33 43 0 0 chr5 33197927 33197974 -169887558 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr5 33198265 33198293 -169887239 + AT_rich Low_complexity Low_complexity 1 28 0 1706 141 4 23 chr5 33198777 33199040 -169886492 - AluSx SINE Alu -54 258 1 1334 140 169 33 chr5 33199040 33199261 -169886271 - MLT1A1 LTR MaLR -55 310 44 2215 92 6 16 chr5 33199261 33199576 -169885956 - AluSp SINE Alu -1 312 1 1334 140 169 33 chr5 33199576 33199626 -169885906 - MLT1A1 LTR MaLR -321 44 2 257 129 145 32 chr5 33199711 33199774 -169885758 - L1MB7 LINE L1 0 6178 6110 355 181 105 19 chr5 33199779 33199884 -169885648 + FLAM_C SINE Alu 18 131 -2 252 222 210 57 chr5 33200200 33200376 -169885156 + L1MC4a LINE L1 5713 5915 -1893 1087 214 12 20 chr5 33201895 33202147 -169883385 + AluJo SINE Alu 51 300 -12 2139 102 3 48 chr5 33202223 33202538 -169882994 - AluSg SINE Alu -9 301 1 1664 182 120 8 chr5 33202688 33203072 -169882460 + Charlie4a DNA MER1_type 2 428 -80 1140 328 107 66 chr5 33203198 33204660 -169880872 - L1MC4a LINE L1 -847 6961 5439 1489 128 3 42 chr5 33204676 33204964 -169880568 - AluSx SINE Alu -35 277 1 2383 79 0 13 chr5 33205201 33205506 -169880026 - AluSq SINE Alu -12 301 1 2126 115 3 16 chr5 33205743 33206055 -169879477 - AluSx SINE Alu 0 312 5 831 177 63 32 chr5 33206211 33206369 -169879163 - AluJo/FRAM SINE Alu -19 293 131 2211 116 3 10 chr5 33206371 33206681 -169878851 - AluSg SINE Alu -1 309 2 1778 126 9 52 chr5 33207054 33207380 -169878152 - AluSq SINE Alu -1 312 1 4662 95 5 0 chr5 33207380 33207982 -169877550 - THE1A-int LTR MaLR -719 861 257 250 87 0 87 chr5 33207971 33208017 -169877515 - THE1A-int LTR MaLR -1516 64 23 * 263 113 19 57 chr5 33208057 33208110 -169877422 - THE1A LTR MaLR -2 353 303 198 167 0 0 chr5 33208578 33208614 -169876918 + GA-rich Low_complexity Low_complexity 2 37 0 3468 233 43 45 chr5 33208614 33208756 -169876776 + L1MC4 LINE L1 6916 7057 -985 2247 86 3 17 chr5 33208756 33209058 -169876474 + AluSg SINE Alu 1 298 -12 3468 233 43 45 chr5 33209058 33209957 -169875575 + L1MC4 LINE L1 7057 7956 -86 2252 105 0 13 chr5 33209957 33210261 -169875271 + AluY SINE Alu 1 300 -11 3468 233 43 45 chr5 33210261 33210343 -169875189 + L1MC4 LINE L1 7956 8037 -5 2171 131 7 0 chr5 33210766 33211071 -169874461 - AluSx SINE Alu -5 307 1 27 0 0 0 chr5 33262351 33262378 -169823154 + AT_rich Low_complexity Low_complexity 1 27 0 183 80 0 0 chr5 33264838 33264863 -169820669 + (A)n Simple_repeat Simple_repeat 1 25 0 383 55 0 18 chr5 33265401 33265456 -169820076 + (GGGA)n Simple_repeat Simple_repeat 1 54 0 24 0 0 0 chr5 33265838 33265862 -169819670 + AT_rich Low_complexity Low_complexity 1 24 0 186 156 0 0 chr5 33266432 33266477 -169819055 + G-rich Low_complexity Low_complexity 1 45 0 238 330 0 0 chr5 33270816 33270913 -169814619 + G-rich Low_complexity Low_complexity 1 97 0 198 91 0 0 chr5 33271049 33271082 -169814450 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 25 0 0 0 chr5 33271405 33271430 -169814102 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chr5 33279208 33279234 -169806298 + (G)n Simple_repeat Simple_repeat 1 26 0 284 145 0 16 chr5 33291072 33291134 -169794398 + (CTG)n Simple_repeat Simple_repeat 2 62 0 234 0 0 0 chr5 33293099 33293125 -169792407 + (G)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr5 33294703 33294724 -169790808 + GC_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr5 33298444 33298470 -169787062 + (A)n Simple_repeat Simple_repeat 1 26 0 1456 52 0 0 chr5 33302723 33302895 -169782637 - AluSx SINE Alu -140 172 1 226 150 38 113 chr5 33302895 33302975 -169782557 + MSTC LTR MaLR 355 428 0 1031 132 23 11 chr5 33302977 33303151 -169782381 + LTR1 LTR ERV1 48 223 -562 1875 120 3 19 chr5 33303151 33303460 -169782072 + AluSg SINE Alu 1 304 -6 3232 102 36 24 chr5 33303654 33304156 -169781376 + LTR1 LTR ERV1 278 785 0 1827 151 0 22 chr5 33304215 33304532 -169781000 - AluSx SINE Alu 0 312 3 1769 115 38 7 chr5 33308044 33308331 -169777201 + AluSg SINE Alu 1 296 -14 441 243 88 15 chr5 33308891 33309027 -169776505 - MIR SINE MIR -113 149 4 3124 141 2 80 chr5 33309082 33309346 -169776186 + LTR26B LTR ERV1 1 284 -247 354 23 0 0 chr5 33309346 33309389 -169776143 + (CA)n Simple_repeat Simple_repeat 2 44 0 3124 141 2 80 chr5 33309389 33309517 -169776015 + LTR26B LTR ERV1 284 336 -195 1523 204 11 0 chr5 33309517 33309801 -169775731 + AluJo SINE Alu 1 287 -25 3124 141 2 80 chr5 33309801 33309983 -169775549 + LTR26B LTR ERV1 336 531 0 293 245 0 142 chr5 33310204 33310272 -169775260 + MER45 DNA AcHobo 1 50 -903 1775 138 22 26 chr5 33310272 33310584 -169774948 + AluJo SINE Alu 1 311 -1 293 245 0 142 chr5 33310584 33310621 -169774911 + MER45 DNA AcHobo 50 91 -862 292 89 111 0 chr5 33310618 33310663 -169774869 - AluSp/q SINE Alu -27 276 227 * 2110 154 144 148 chr5 33310820 33311003 -169774529 - MER57-int LTR ERV1 -4070 3467 3285 1895 142 0 7 chr5 33311003 33311298 -169774234 - AluSg SINE Alu -17 293 1 2110 154 144 148 chr5 33311298 33311385 -169774147 - MER57-int LTR ERV1 -4252 3285 3199 180 253 23 115 chr5 33311385 33311472 -169774060 - L3b LINE CR1 -208 1375 1297 2110 154 144 148 chr5 33311472 33311803 -169773729 - MER57-int LTR ERV1 -4338 3199 2782 870 126 13 33 chr5 33311804 33311955 -169773577 - MER57B-int LTR ERV1 -3933 2013 1866 * 5215 164 33 14 chr5 33311954 33312447 -169773085 - MER57B-int LTR ERV1 -5166 2371 1852 2086 76 45 10 chr5 33312447 33312738 -169772794 + AluSg SINE Alu 1 301 -9 5215 164 33 14 chr5 33312738 33313121 -169772411 - MER57B-int LTR ERV1 -5685 1852 1478 1347 91 0 6 chr5 33313149 33313325 -169772207 - MER57B-int LTR ERV1 -6570 967 793 * 2550 141 50 21 chr5 33313323 33313743 -169771789 - MER57B-int LTR ERV1 -6860 677 246 981 95 7 7 chr5 33313750 33313898 -169771634 - MER57B LTR ERV1 0 434 287 1816 146 91 40 chr5 33313905 33314234 -169771298 + MER41-int LTR ERV1 382 727 -5219 1309 144 0 0 chr5 33314233 33314421 -169771111 + MER41-int LTR ERV1 1404 1591 -4355 * 717 126 0 18 chr5 33314419 33314530 -169771002 + MER41-int LTR ERV1 2477 2585 -4952 * 21 0 0 0 chr5 33315121 33315142 -169770390 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr5 33316050 33316077 -169769455 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr5 33316631 33316659 -169768873 + AT_rich Low_complexity Low_complexity 1 28 0 583 295 60 0 chr5 33316659 33316825 -169768707 - MIR SINE MIR -42 220 45 1187 122 0 0 chr5 33320233 33320397 -169765135 + AluSq SINE Alu 133 296 -17 1892 130 13 29 chr5 33320684 33320991 -169764541 - AluSx SINE Alu -10 302 1 22 35 0 0 chr5 33321546 33321575 -169763957 + AT_rich Low_complexity Low_complexity 1 29 0 2239 82 20 3 chr5 33322059 33322362 -169763170 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr5 33323161 33323182 -169762350 + AT_rich Low_complexity Low_complexity 1 21 0 264 159 89 33 chr5 33324695 33324785 -169760747 - L1MC/D LINE L1 -378 5800 5715 2052 93 7 17 chr5 33325019 33325308 -169760224 + AluSx SINE Alu 2 287 -25 1358 98 221 4 chr5 33325530 33325765 -169759767 + AluSg1 SINE Alu 2 287 -22 284 102 20 0 chr5 33325765 33325814 -169759718 + (GA)n Simple_repeat Simple_repeat 1 50 0 605 110 0 0 chr5 33325828 33325919 -169759613 - AluY SINE Alu -5 306 216 4307 131 53 36 chr5 33326020 33326354 -169759178 + MER41B-int LTR ERV1 2867 3194 -4343 1729 139 34 4 chr5 33326354 33326621 -169758911 + AluSx SINE Alu 2 276 -36 4307 131 53 36 chr5 33326621 33326834 -169758698 + MER41B-int LTR ERV1 3194 3402 -4135 1978 136 3 16 chr5 33326834 33326970 -169758562 + AluSx SINE Alu 1 137 -175 2162 107 0 7 chr5 33326970 33327270 -169758262 + AluSc SINE Alu 1 298 -11 1978 136 3 16 chr5 33327270 33327442 -169758090 + AluSx SINE Alu 137 305 -7 2086 116 3 0 chr5 33327442 33327734 -169757798 + AluSc SINE Alu 1 293 -16 4307 131 53 36 chr5 33327734 33327942 -169757590 + MER41B-int LTR ERV1 3401 3637 -3900 705 94 31 94 chr5 33327930 33327986 -169757546 + MER41B-int LTR ERV1 3300 3358 -2588 * 676 19 65 0 chr5 33327986 33328094 -169757438 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 2223 62 0 21 chr5 33328094 33328382 -169757150 - AluY SINE Alu -25 286 5 705 94 31 94 chr5 33328382 33328483 -169757049 + MER41B-int LTR ERV1 3356 3448 -2498 4571 108 18 5 chr5 33328487 33328507 -169757025 + MER41B-int LTR ERV1 2415 2433 -3513 2234 102 0 6 chr5 33328507 33328820 -169756712 - AluSq SINE Alu -2 311 1 4571 108 18 5 chr5 33328820 33329517 -169756015 + MER41B-int LTR ERV1 2433 4752 -1194 4858 86 8 24 chr5 33329522 33330224 -169755308 + MER41B-int LTR ERV1 5256 5946 0 4007 130 36 7 chr5 33330224 33330841 -169754691 + MER41B LTR ERV1 1 635 0 435 213 65 101 chr5 33331319 33331488 -169754044 - MER102b DNA MER1_type -10 331 169 2026 136 3 0 chr5 33331490 33331798 -169753734 - AluSx SINE Alu -3 309 1 2043 125 10 0 chr5 33332121 33332424 -169753108 + AluSx SINE Alu 1 306 -6 1493 137 15 8 chr5 33332727 33332989 -169752543 - AluSq SINE Alu -49 264 1 813 206 130 132 chr5 33332990 33333529 -169752003 + MER45C DNA AcHobo 96 633 -320 313 192 0 0 chr5 33333525 33333577 -169751955 + MER45C DNA AcHobo 900 951 -2 * 484 225 80 112 chr5 33333593 33333702 -169751830 + MIR SINE MIR 78 180 -82 3169 60 17 70 chr5 33333702 33333737 -169751795 - MLT2A1 LTR ERVL 0 444 409 396 59 0 0 chr5 33333737 33333788 -169751744 + (TA)n Simple_repeat Simple_repeat 1 51 0 3169 60 17 70 chr5 33333788 33334221 -169751311 - MLT2A1 LTR ERVL -35 409 1 484 225 80 112 chr5 33334221 33334298 -169751234 + MIR SINE MIR 180 258 -4 2275 100 0 0 chr5 33334477 33334787 -169750745 - AluY SINE Alu -1 310 1 1770 147 3 46 chr5 33334789 33335095 -169750437 - AluJb SINE Alu -19 293 1 7121 179 95 32 chr5 33335237 33336697 -169748835 - MER52A LTR ERV1 0 1755 204 286 220 0 0 chr5 33337054 33337113 -169748419 - MER52A LTR ERV1 -1696 59 1 1419 168 28 48 chr5 33337197 33337278 -169748254 + MLT1A1 LTR MaLR 1 82 -283 2286 63 70 0 chr5 33337278 33337564 -169747968 + AluSq SINE Alu 1 306 -7 1419 168 28 48 chr5 33337564 33337703 -169747829 + MLT1A1 LTR MaLR 82 216 -149 3478 92 4 48 chr5 33337703 33338142 -169747390 - LOR1a LTR ERV1 0 497 83 1887 137 3 48 chr5 33338142 33338457 -169747075 + AluJb SINE Alu 9 309 -3 3478 92 4 48 chr5 33338457 33338537 -169746995 - LOR1a LTR ERV1 -414 83 1 1419 168 28 48 chr5 33338537 33338606 -169746926 + MLT1A1 LTR MaLR 216 285 -80 1809 98 0 12 chr5 33338745 33338990 -169746542 - AluSq SINE Alu -71 242 1 847 170 157 0 chr5 33339079 33339238 -169746294 + MER8 DNA MER2_type 1 184 -55 25 51 0 0 chr5 33339731 33339770 -169745762 + AT_rich Low_complexity Low_complexity 1 39 0 412 108 40 14 chr5 33340072 33340146 -169745386 + L1PB3 LINE L1 6070 6145 -9 490 153 194 14 chr5 33340358 33340502 -169745030 + MER104 DNA Tc2 6 175 -5 644 129 86 9 chr5 33340637 33340753 -169744779 + FLAM_C SINE Alu 1 125 -8 590 173 40 1 chr5 33341897 33342012 -169743520 - L1MB7 LINE L1 -242 5942 5825 804 155 0 0 chr5 33342400 33342516 -169743016 - AluJo/FRAM SINE Alu -16 296 181 380 172 0 0 chr5 33342518 33342576 -169742956 + AluJo/FRAM SINE Alu 192 249 -53 825 163 71 0 chr5 33342578 33342719 -169742813 - AluJo SINE Alu -143 169 19 956 169 23 23 chr5 33343721 33343893 -169741639 - FAM SINE Alu 0 175 4 1395 174 28 56 chr5 33343908 33343991 -169741541 - AluJo SINE Alu -12 300 216 2229 107 0 3 chr5 33343991 33344331 -169741201 + AluSq SINE Alu 1 339 0 1395 174 28 56 chr5 33344331 33344533 -169740999 - AluJo SINE Alu -96 216 21 271 146 0 0 chr5 33344533 33344574 -169740958 - AluJo SINE Alu -261 41 1 275 207 52 17 chr5 33344746 33344804 -169740728 - MIR SINE MIR -109 99 40 251 240 93 13 chr5 33345002 33345077 -169740455 + L1ME LINE L1 5515 5595 -526 2015 122 22 4 chr5 33345097 33345375 -169740157 - AluSp SINE Alu -30 283 1 378 294 15 15 chr5 33345561 33345697 -169739835 - MIR SINE MIR -1 261 126 966 214 157 5 chr5 33346286 33346325 -169739207 - L1MB5 LINE L1 -1 6183 6151 306 0 0 0 chr5 33346325 33346359 -169739173 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1678 191 0 20 chr5 33346363 33346657 -169738875 + AluJb SINE Alu 1 288 -24 966 214 157 5 chr5 33346657 33346927 -169738605 - L1MB5 LINE L1 -35 6149 5838 800 167 8 0 chr5 33346933 33347065 -169738467 - FLAM_A SINE Alu 0 133 1 399 21 0 0 chr5 33347150 33347198 -169738334 + (GA)n Simple_repeat Simple_repeat 1 48 0 228 67 0 0 chr5 33347206 33347236 -169738296 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 1620 191 0 24 chr5 33347236 33347516 -169738016 - AluJo SINE Alu -37 275 1 1632 213 0 0 chr5 33347927 33348218 -169737314 + AluJo SINE Alu 1 291 -21 649 151 134 0 chr5 33349137 33349256 -169736276 + L1MC1 LINE L1 6138 6272 -61 677 181 8 24 chr5 33349258 33349385 -169736147 + Tigger2a DNA MER2_type 3 127 -307 2118 144 0 6 chr5 33349390 33349702 -169735830 + AluSx SINE Alu 1 310 -2 2071 125 0 0 chr5 33349952 33350232 -169735300 + AluSg SINE Alu 1 280 -30 2022 125 11 0 chr5 33351063 33351379 -169734153 + AluSx SINE Alu 1 319 0 204 97 0 0 chr5 33351540 33351571 -169733961 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 279 291 103 41 chr5 33351759 33352129 -169733403 + L1M4 LINE L1 3580 3977 -2169 1613 172 15 4 chr5 33352367 33352635 -169732897 - AluJb SINE Alu -30 282 12 2269 86 7 7 chr5 33352687 33352979 -169732553 - AluSg SINE Alu -16 294 3 1480 128 150 11 chr5 33353205 33353471 -169732061 + AluSg SINE Alu 2 304 -6 1001 145 52 17 chr5 33353560 33353732 -169731800 + AluSx SINE Alu 2 179 -133 1357 174 51 0 chr5 33353834 33354087 -169731445 + L1MB7 LINE L1 5919 6184 0 1520 151 37 74 chr5 33354143 33354467 -169731065 - AluJb SINE Alu 0 312 1 21 36 0 0 chr5 33354486 33354514 -169731018 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr5 33355152 33355178 -169730354 + AT_rich Low_complexity Low_complexity 1 26 0 415 243 42 13 chr5 33355372 33355562 -169729970 + MIR SINE MIR 13 262 0 741 233 157 38 chr5 33356172 33356459 -169729073 + L1MD2 LINE L1 5899 6219 -140 1947 134 30 13 chr5 33357004 33357302 -169728230 + AluSx SINE Alu 1 303 -9 1196 173 25 38 chr5 33357803 33358040 -169727492 + AluJo SINE Alu 1 234 -78 698 187 0 0 chr5 33358040 33358163 -169727369 + FLAM_C SINE Alu 15 137 -6 2046 218 127 17 chr5 33358163 33358690 -169726842 + L1MB7 LINE L1 5576 6160 -24 2331 89 20 3 chr5 33358945 33359249 -169726283 - AluSg SINE Alu -1 309 1 1362 97 116 5 chr5 33359494 33359701 -169725831 + MER30 DNA MER1_type 1 230 0 1227 172 161 0 chr5 33359710 33359977 -169725555 - AluJb SINE Alu -2 310 1 26 30 0 0 chr5 33359986 33360019 -169725513 + AT_rich Low_complexity Low_complexity 1 33 0 31 26 0 0 chr5 33360195 33360233 -169725299 + AT_rich Low_complexity Low_complexity 1 38 0 1958 64 113 0 chr5 33360273 33360539 -169724993 - AluY SINE Alu -15 296 1 2060 138 10 0 chr5 33360544 33360842 -169724690 - AluSx SINE Alu -11 301 1 361 284 55 28 chr5 33360901 33361119 -169724413 + L1M4 LINE L1 4724 4947 -1199 2211 120 0 0 chr5 33361352 33361652 -169723880 + AluSx SINE Alu 1 300 -12 1321 138 146 16 chr5 33361662 33361916 -169723616 + AluJb SINE Alu 1 287 -25 2534 48 0 23 chr5 33362199 33362509 -169723023 + AluY SINE Alu 1 303 -8 944 132 220 0 chr5 33364812 33364994 -169720538 + MER46A DNA MER2_type 15 236 0 1954 134 17 10 chr5 33365105 33365396 -169720136 + AluJb SINE Alu 1 293 -19 200 273 133 35 chr5 33365403 33365546 -169719986 - MIR SINE MIR -6 256 100 1644 175 30 10 chr5 33365849 33366152 -169719380 - AluJo SINE Alu -3 309 1 1872 129 7 11 chr5 33366155 33366435 -169719097 - AluSx SINE Alu -13 299 21 2312 90 10 3 chr5 33366633 33366934 -169718598 + AluSq SINE Alu 1 303 -10 191 272 44 110 chr5 33366973 33367036 -169718496 - MER5A DNA MER1_type 0 189 138 762 174 8 0 chr5 33367036 33367157 -169718375 + FLAM_C SINE Alu 1 122 -11 191 272 44 110 chr5 33367157 33367229 -169718303 - MER5A DNA MER1_type -51 138 63 262 239 37 83 chr5 33367449 33367558 -169717974 - L1MC4a LINE L1 -1875 5933 5830 404 121 30 0 chr5 33367629 33367694 -169717838 + AluSp/q SINE Alu 232 298 -15 466 175 25 0 chr5 33367694 33367774 -169717758 + AluS SINE Alu 1 82 -231 2595 49 0 16 chr5 33368067 33368375 -169717157 + AluY SINE Alu 1 303 -8 372 152 0 0 chr5 33368439 33368505 -169717027 + (CA)n Simple_repeat Simple_repeat 2 67 0 605 254 112 9 chr5 33368540 33368772 -169716760 - MIR SINE MIR -5 257 2 359 292 84 40 chr5 33369609 33369811 -169715721 - MIR SINE MIR 0 262 52 2217 121 3 0 chr5 33370192 33370490 -169715042 + AluSx SINE Alu 1 299 -13 1882 132 57 10 chr5 33371008 33371304 -169714228 + AluSx SINE Alu 1 310 -2 221 0 0 33 chr5 33371346 33371376 -169714156 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2298 86 0 23 chr5 33371836 33372138 -169713394 + AluSg SINE Alu 1 295 -15 216 278 6 107 chr5 33372505 33372674 -169712858 - MIR SINE MIR 0 262 111 198 0 0 0 chr5 33373247 33373269 -169712263 + (A)n Simple_repeat Simple_repeat 1 22 0 2175 93 4 4 chr5 33373438 33373717 -169711815 + AluSc SINE Alu 1 279 -30 186 43 0 0 chr5 33373720 33373743 -169711789 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 2311 92 7 0 chr5 33374488 33374782 -169710750 - AluSg SINE Alu -14 296 1 188 239 0 159 chr5 33374954 33375019 -169710513 + L2 LINE L2 3219 3260 -53 2512 67 3 0 chr5 33375019 33375316 -169710216 + AluSp SINE Alu 1 298 -15 188 239 0 159 chr5 33375316 33375363 -169710169 + L2 LINE L2 3260 3313 0 469 290 136 32 chr5 33375573 33375794 -169709738 + MIR SINE MIR 19 262 0 297 236 56 90 chr5 33376078 33376222 -169709310 + MIR3 SINE MIR 42 180 -28 293 237 53 26 chr5 33376417 33376531 -169709001 + L1ME4a LINE L1 5843 5959 -162 2349 97 0 0 chr5 33377439 33377737 -169707795 + AluSg SINE Alu 1 298 -12 2345 88 0 14 chr5 33378003 33378300 -169707232 - AluSc SINE Alu -16 293 1 6254 104 42 47 chr5 33378724 33379060 -169706472 + L1MA3 LINE L1 5101 5437 -868 897 56 0 0 chr5 33379060 33379167 -169706365 + U6 snRNA snRNA 1 107 0 6254 104 42 47 chr5 33379167 33379431 -169706101 + L1MA3 LINE L1 5437 5701 -604 1625 186 45 3 chr5 33379431 33379721 -169705811 + AluJo SINE Alu 1 302 -10 6254 104 42 47 chr5 33379721 33380268 -169705264 + L1MA3 LINE L1 5701 6247 -58 2169 87 62 3 chr5 33380268 33380556 -169704976 - AluSx SINE Alu -7 305 1 6254 104 42 47 chr5 33380556 33380610 -169704922 + L1MA3 LINE L1 6247 6300 -5 801 265 191 28 chr5 33381019 33381500 -169704032 + L2 LINE L2 2749 3312 -1 29 70 0 0 chr5 33382096 33382153 -169703379 + GC_rich Low_complexity Low_complexity 1 57 0 2309 89 0 49 chr5 33382854 33383034 -169702498 - AluSq SINE Alu -3 310 123 315 0 0 0 chr5 33383034 33383069 -169702463 + (TG)n Simple_repeat Simple_repeat 2 36 0 2106 91 0 0 chr5 33383069 33383332 -169702200 - AluSg SINE Alu -42 268 6 2309 89 0 49 chr5 33383332 33383476 -169702056 - AluSq SINE Alu -188 125 1 1964 135 20 3 chr5 33383642 33383946 -169701586 + AluSx SINE Alu 3 311 -1 2391 83 10 0 chr5 33384701 33385003 -169700529 + AluSp SINE Alu 1 305 -8 2049 145 0 19 chr5 33385184 33385501 -169700031 + AluJo SINE Alu 1 311 -1 2178 115 6 10 chr5 33385851 33386163 -169699369 + AluSx SINE Alu 1 311 -1 3065 164 66 22 chr5 33386175 33386357 -169699175 - L1MB7 LINE L1 -22 6162 5989 2306 107 7 0 chr5 33386357 33386667 -169698865 - AluSx SINE Alu 0 312 1 3065 164 66 22 chr5 33386667 33387074 -169698458 - L1MB7 LINE L1 -195 5989 5547 1942 125 14 7 chr5 33387780 33388075 -169697457 - AluSx SINE Alu -10 302 6 265 309 24 0 chr5 33388076 33388160 -169697372 + L2 LINE L2 3228 3313 0 23 0 0 0 chr5 33388258 33388281 -169697251 + AT_rich Low_complexity Low_complexity 1 23 0 184 231 58 115 chr5 33388292 33388396 -169697136 + MER5A DNA MER1_type 92 189 0 232 36 0 0 chr5 33388579 33388607 -169696925 + (TTTTC)n Simple_repeat Simple_repeat 4 140 0 2047 99 0 34 chr5 33388607 33388901 -169696631 - AluSx SINE Alu -1 311 1 365 261 0 11 chr5 33389745 33389833 -169695699 + MER5A DNA MER1_type 9 95 -94 346 315 123 0 chr5 33389949 33390079 -169695453 - MER5A DNA MER1_type -7 182 37 2071 129 0 0 chr5 33391868 33392170 -169693362 + AluSx SINE Alu 1 302 -10 276 30 0 0 chr5 33392557 33392590 -169692942 + (CA)n Simple_repeat Simple_repeat 2 34 0 1477 162 219 70 chr5 33392985 33393035 -169692497 - MLT1C LTR MaLR -6 461 420 3173 95 89 42 chr5 33393035 33393538 -169691994 - MER1A DNA MER1_type 0 527 1 1477 162 219 70 chr5 33393538 33393557 -169691975 - MLT1C LTR MaLR -47 420 405 1572 103 5 5 chr5 33393557 33393781 -169691751 - AluSq SINE Alu -4 309 86 1477 162 219 70 chr5 33393781 33394111 -169691421 - MLT1C LTR MaLR -62 405 1 2077 114 7 0 chr5 33394259 33394557 -169690975 - AluSp SINE Alu -13 300 1 886 122 8 8 chr5 33394653 33394784 -169690748 + FLAM_C SINE Alu 1 131 -2 306 312 100 30 chr5 33394911 33395078 -169690454 + MLT1L LTR MaLR 203 392 -223 1886 83 23 11 chr5 33395078 33395342 -169690190 - AluSx SINE Alu -11 301 35 306 312 100 30 chr5 33395342 33395405 -169690127 + MLT1L LTR MaLR 392 449 -166 1934 177 126 19 chr5 33395428 33395858 -169689674 + MLT1D LTR MaLR 30 505 0 278 271 15 68 chr5 33395872 33396005 -169689527 + MLT1L LTR MaLR 489 614 -1 2098 103 31 0 chr5 33396082 33396372 -169689160 - AluSq SINE Alu -14 299 1 381 259 83 24 chr5 33396524 33396759 -169688773 - MLT1J LTR MaLR -164 347 42 1900 139 13 10 chr5 33396974 33397276 -169688256 + AluJb SINE Alu 1 303 -9 503 304 58 12 chr5 33397901 33398072 -169687460 + MIR3 SINE MIR 22 200 -8 1125 167 142 0 chr5 33398411 33398651 -169686881 + AluJb SINE Alu 35 308 -4 2378 79 0 0 chr5 33398831 33399135 -169686397 + AluSg SINE Alu 2 305 -5 1743 140 0 42 chr5 33399335 33399502 -169686030 - AluJb SINE Alu -18 294 121 183 42 0 0 chr5 33399502 33399526 -169686006 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1595 118 68 54 chr5 33399526 33399806 -169685726 - AluSx SINE Alu -28 284 1 1743 140 0 42 chr5 33399806 33399944 -169685588 - AluJb SINE Alu -189 123 1 1581 180 42 67 chr5 33400215 33400664 -169684868 + LTR37B LTR ERV1 15 452 -16 195 129 0 0 chr5 33400678 33400709 -169684823 + (A)n Simple_repeat Simple_repeat 1 31 0 2280 82 0 20 chr5 33400750 33401055 -169684477 - AluSx SINE Alu -13 299 1 1832 183 49 9 chr5 33401077 33401405 -169684127 - MLT1A1 LTR MaLR -2 363 23 255 149 0 0 chr5 33401404 33401451 -169684081 + AluSp/q SINE Alu 253 299 -4 * 338 200 32 74 chr5 33401452 33401547 -169683985 - L1MC4 LINE L1 -1339 6703 6613 313 189 0 0 chr5 33401569 33401622 -169683910 + AluY SINE Alu 123 175 -126 737 174 49 7 chr5 33401623 33401767 -169683765 + AluJb SINE Alu 145 294 -18 731 305 120 19 chr5 33401788 33402202 -169683330 - L2 LINE L2 -66 3247 2797 25 0 0 0 chr5 33402270 33402295 -169683237 + AT_rich Low_complexity Low_complexity 1 25 0 1814 160 0 3 chr5 33402295 33402588 -169682944 - AluJb SINE Alu -20 292 1 1776 149 57 30 chr5 33402622 33402991 -169682541 - L1MD3 LINE L1 -81 7914 7536 2293 57 10 7 chr5 33403156 33403455 -169682077 - AluY SINE Alu -10 301 2 2054 106 0 10 chr5 33403538 33403831 -169681701 + AluSx SINE Alu 5 294 -18 340 298 100 35 chr5 33404020 33404273 -169681259 - L2 LINE L2 -247 3025 2760 306 271 89 94 chr5 33404599 33404749 -169680783 + L2 LINE L2 2067 2216 -1098 246 62 0 0 chr5 33404749 33404781 -169680751 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2014 116 0 0 chr5 33404783 33405067 -169680465 - AluSx SINE Alu -28 284 1 306 271 89 94 chr5 33405067 33405208 -169680324 + L2 LINE L2 2217 2357 -957 2352 73 0 3 chr5 33405208 33405510 -169680022 + AluY SINE Alu 1 301 -10 306 271 89 94 chr5 33405510 33405650 -169679882 + L2 LINE L2 2357 2500 -814 940 183 0 0 chr5 33405676 33405845 -169679687 - AluJ SINE Alu -15 297 129 683 149 9 0 chr5 33407220 33407327 -169678205 - AluJ SINE Alu -165 147 40 2146 123 0 0 chr5 33407603 33407911 -169677621 + AluSq SINE Alu 1 308 -5 1093 167 6 0 chr5 33408369 33408543 -169676989 - FAM SINE Alu 0 175 1 4846 169 11 25 chr5 33408673 33409530 -169676002 - L1MB7 LINE L1 0 6184 5317 5455 113 34 1 chr5 33409530 33409716 -169675816 - L1PA16 LINE L1 -4 6162 5984 1483 175 13 50 chr5 33409716 33410019 -169675513 + AluJo SINE Alu 11 302 -10 5455 113 34 1 chr5 33410019 33410837 -169674695 - L1PA16 LINE L1 -182 5984 5144 279 0 0 0 chr5 33410837 33410868 -169674664 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5455 113 34 1 chr5 33410868 33411350 -169674182 - L1PA16 LINE L1 -1022 5144 4679 4846 169 11 25 chr5 33411350 33411431 -169674101 - L1MB7 LINE L1 -867 5317 5259 1765 137 27 7 chr5 33411604 33411896 -169673636 - AluJb SINE Alu -4 308 11 294 148 111 0 chr5 33412019 33412073 -169673459 + MER94 DNA DNA 1 60 -74 2113 120 0 3 chr5 33412074 33412382 -169673150 + AluSq SINE Alu 1 307 -6 7971 15 0 0 chr5 33412840 33414159 -169671373 + L1PA3 LINE L1 4854 6172 0 345 293 85 48 chr5 33414714 33414984 -169670548 - ERVL LTR ERVL -477 5287 5008 1507 169 3 77 chr5 33415054 33415419 -169670113 + AluSx SINE Alu 1 312 0 1873 307 148 29 chr5 33415641 33415919 -169669613 - ERVL LTR ERVL -2540 3224 2981 1527 227 0 0 chr5 33415919 33416223 -169669309 - AluJb SINE Alu -8 304 1 1873 307 148 29 chr5 33416223 33417123 -169668409 - ERVL LTR ERVL -2783 2981 1905 375 304 87 7 chr5 33418178 33418316 -169667216 + MIR SINE MIR 2 150 -112 281 232 116 80 chr5 33418584 33418722 -169666810 + LTR33A LTR ERVL 10 152 -371 495 239 102 18 chr5 33418887 33419054 -169666478 + LTR33A LTR ERVL 343 523 0 441 192 88 110 chr5 33419116 33419178 -169666354 - MER5B DNA MER1_type 0 178 116 1481 165 3 58 chr5 33419178 33419470 -169666062 + AluJo SINE Alu 1 275 -37 297 0 0 0 chr5 33419470 33419503 -169666029 + (CA)n Simple_repeat Simple_repeat 1 33 0 1481 165 3 58 chr5 33419503 33419537 -169665995 + AluJo SINE Alu 275 309 -3 441 192 88 110 chr5 33419537 33419656 -169665876 - MER5B DNA MER1_type -62 116 1 1843 129 36 0 chr5 33419671 33419951 -169665581 - AluJb SINE Alu -22 290 1 2149 113 3 0 chr5 33421071 33421371 -169664161 - AluSx SINE Alu -11 301 1 411 285 166 25 chr5 33421727 33421903 -169663629 - MLT1L LTR MaLR -69 546 396 2724 150 12 5 chr5 33421903 33422324 -169663208 + MER61B LTR ERV1 1 424 -1 411 285 166 25 chr5 33422324 33422473 -169663059 - MLT1L LTR MaLR -219 396 175 885 141 21 115 chr5 33422504 33422574 -169662958 + MER5A DNA MER1_type 17 92 -97 1599 131 96 4 chr5 33422574 33422834 -169662698 + AluSx SINE Alu 11 294 -18 885 141 21 115 chr5 33422834 33422954 -169662578 + MER5A DNA MER1_type 92 189 0 332 283 192 17 chr5 33423071 33423248 -169662284 + L2 LINE L2 3106 3313 0 1174 290 84 46 chr5 33423732 33424277 -169661255 - MLT1K LTR MaLR -19 569 4 2964 144 16 48 chr5 33425283 33425718 -169659814 - MER41E LTR ERV1 0 512 64 2183 104 0 0 chr5 33425718 33426016 -169659516 - AluSg SINE Alu -12 298 1 2964 144 16 48 chr5 33426016 33426055 -169659477 - MER41E LTR ERV1 -448 64 54 2329 94 3 0 chr5 33426055 33426364 -169659168 - AluSg SINE Alu 0 310 1 2964 144 16 48 chr5 33426364 33426403 -169659129 - MER41E LTR ERV1 -458 54 15 1843 85 3 120 chr5 33427055 33427397 -169658135 - AluSg1 SINE Alu -7 302 1 277 273 45 45 chr5 33427713 33427801 -169657731 + MER91B DNA MER1_type 100 187 -3 545 248 126 30 chr5 33428689 33428887 -169656645 - LTR40a LTR ERVL -118 401 185 2126 102 7 0 chr5 33428887 33429192 -169656340 - AluSx SINE Alu -3 309 3 3907 126 24 8 chr5 33429213 33429807 -169655725 - LTR9B LTR ERV1 0 644 42 1843 137 23 13 chr5 33430027 33430334 -169655198 + AluSx SINE Alu 1 310 -2 356 268 44 68 chr5 33430898 33431103 -169654429 + HAL1b LINE L1 709 908 -440 481 219 1 32 chr5 33431219 33431343 -169654189 + HAL1b LINE L1 849 2357 -150 1931 133 7 0 chr5 33431477 33431771 -169653761 - AluSx SINE Alu -16 296 1 1342 184 20 47 chr5 33431773 33432072 -169653460 - AluJo SINE Alu -21 291 1 3085 155 41 24 chr5 33432210 33432751 -169652781 - MER21A LTR ERV1 -6 925 376 313 164 49 33 chr5 33432756 33432817 -169652715 - MER21A LTR ERV1 -667 264 203 2018 107 0 7 chr5 33432828 33433117 -169652415 + AluSx SINE Alu 1 287 -25 232 325 123 0 chr5 33433246 33433400 -169652132 + L2 LINE L2 2453 2625 -689 817 250 18 0 chr5 33433846 33434014 -169651518 + MER45A DNA AcHobo 8 178 0 2108 95 3 20 chr5 33434140 33434446 -169651086 - AluSg SINE Alu -9 301 1 1016 254 60 80 chr5 33434562 33434975 -169650557 + LTR16C LTR ERVL 87 491 0 2092 107 7 13 chr5 33435271 33435443 -169650089 - AluSx SINE Alu -5 307 136 2256 92 0 7 chr5 33435443 33435749 -169649783 - AluSg SINE Alu -6 304 1 2092 107 7 13 chr5 33435749 33435885 -169649647 - AluSx SINE Alu -176 136 1 1126 254 95 44 chr5 33435917 33436327 -169649205 - MLT1J LTR MaLR -13 498 59 827 156 0 0 chr5 33436327 33436449 -169649083 + FLAM_A SINE Alu 1 122 -11 1126 254 95 44 chr5 33436449 33436511 -169649021 - MLT1J LTR MaLR -452 59 2 830 219 17 6 chr5 33436837 33437011 -169648521 + MLT1I LTR MaLR 1 176 -233 1614 172 44 51 chr5 33437011 33437476 -169648056 + MLT2D LTR ERVL 1 444 -20 211 176 0 39 chr5 33437476 33437527 -169648005 + (TCTCTG)n Simple_repeat Simple_repeat 3 51 0 234 217 0 0 chr5 33437537 33437583 -169647949 - Alu SINE Alu -8 294 249 564 15 0 0 chr5 33437594 33437659 -169647873 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 200 167 48 0 chr5 33437660 33437702 -169647830 + (CAGAGA)n Simple_repeat Simple_repeat 1 44 0 2596 127 3 8 chr5 33437704 33438090 -169647442 + MER50 LTR ERV1 328 711 -23 498 129 0 0 chr5 33438091 33438161 -169647371 - AluJ/FLAM SINE Alu -241 71 2 2064 133 10 3 chr5 33438976 33439285 -169646247 + AluJb SINE Alu 1 311 -1 296 260 106 19 chr5 33439285 33439389 -169646143 - MER5A DNA MER1_type -32 157 45 946 106 8 0 chr5 33440416 33440548 -169644984 + AluSq/x SINE Alu 1 133 -180 231 61 0 0 chr5 33441105 33441138 -169644394 + (TA)n Simple_repeat Simple_repeat 1 33 0 872 219 0 0 chr5 33441138 33441287 -169644245 - AluJb SINE Alu -25 287 136 2136 133 0 7 chr5 33441368 33441669 -169643863 - AluSx SINE Alu -13 299 1 4855 176 22 106 chr5 33442569 33443061 -169642471 + L1MB3 LINE L1 3984 4516 -1667 274 148 229 0 chr5 33443061 33443122 -169642410 + AluJ/FRAM SINE Alu 223 297 -5 2224 111 3 3 chr5 33443127 33443434 -169642098 + AluSp SINE Alu 7 313 0 4855 176 22 106 chr5 33443434 33443832 -169641700 + L1MB3 LINE L1 4520 4950 -1233 2247 132 3 0 chr5 33443832 33444136 -169641396 + AluSx SINE Alu 1 305 -7 4855 176 22 106 chr5 33444136 33444443 -169641089 + L1MB3 LINE L1 4950 5281 -902 2305 126 0 0 chr5 33444443 33444753 -169640779 + AluSq SINE Alu 1 310 -3 4855 176 22 106 chr5 33444753 33444970 -169640562 + L1MB3 LINE L1 5281 5515 -668 1616 99 9 0 chr5 33444970 33445182 -169640350 + AluY SINE Alu 27 240 -71 4855 176 22 106 chr5 33445182 33445212 -169640320 + L1MB3 LINE L1 5515 5546 -637 2027 144 3 28 chr5 33445212 33445532 -169640000 + AluJb SINE Alu 1 312 0 4855 176 22 106 chr5 33445532 33445569 -169639963 + L1MB3 LINE L1 5546 5585 -598 1799 164 27 0 chr5 33445569 33445861 -169639671 + AluSx SINE Alu 1 300 -12 4855 176 22 106 chr5 33445861 33446130 -169639402 + L1MB3 LINE L1 5585 5875 -308 2025 115 6 48 chr5 33446130 33446443 -169639089 + AluSx SINE Alu 1 300 -12 4855 176 22 106 chr5 33446443 33446518 -169639014 + L1MB3 LINE L1 5875 5955 -228 1628 194 3 7 chr5 33446518 33446812 -169638720 - AluJb SINE Alu -19 293 1 4855 176 22 106 chr5 33446812 33447215 -169638317 + L1MB3 LINE L1 5955 6086 -97 1906 178 99 13 chr5 33447217 33447600 -169637932 + MLT2B2 LTR ERVL 1 416 -99 402 108 0 0 chr5 33447600 33447665 -169637867 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 2187 148 166 47 chr5 33447668 33448110 -169637422 - MLT2B3 LTR ERVL 0 554 45 2098 136 3 0 chr5 33448110 33448404 -169637128 - AluSx SINE Alu -15 297 3 2187 148 166 47 chr5 33448404 33448456 -169637076 - MLT2B3 LTR ERVL -509 45 1 314 146 0 0 chr5 33448459 33448507 -169637025 + MLT2B2 LTR ERVL 417 464 0 400 104 104 83 chr5 33448507 33448603 -169636929 + L1MB4 LINE L1 6083 6180 0 2211 89 4 0 chr5 33448951 33449278 -169636254 + AluY SINE Alu 1 328 0 23 0 0 0 chr5 33449278 33449301 -169636231 + AT_rich Low_complexity Low_complexity 1 23 0 2076 148 0 7 chr5 33449710 33450013 -169635519 + AluSx SINE Alu 1 301 -11 2188 120 0 3 chr5 33450065 33450366 -169635166 - AluSx SINE Alu -12 300 1 2134 111 16 97 chr5 33451347 33451450 -169634082 - L1MB3 LINE L1 -1 6182 6072 1700 168 10 7 chr5 33451450 33451742 -169633790 - AluJo SINE Alu -19 293 1 2134 111 16 97 chr5 33451742 33451887 -169633645 - L1MB3 LINE L1 -111 6072 5979 2209 118 3 3 chr5 33451887 33452193 -169633339 - AluSq SINE Alu -7 306 1 2134 111 16 97 chr5 33452193 33452366 -169633166 - L1MB3 LINE L1 -204 5979 5794 2058 123 0 23 chr5 33452377 33452677 -169632855 + AluJo SINE Alu 9 301 -11 2265 101 7 0 chr5 33453075 33453381 -169632151 - AluSx SINE Alu 0 312 5 30 45 0 0 chr5 33453408 33453452 -169632080 + AT_rich Low_complexity Low_complexity 1 44 0 463 133 0 0 chr5 33453555 33453630 -169631902 + AluS SINE Alu 223 297 -15 371 263 122 47 chr5 33454029 33454242 -169631290 + MIR SINE MIR 30 258 -4 2397 127 29 59 chr5 33455396 33456020 -169629512 + Tigger2 DNA MER2_type 3 662 -2056 729 179 0 50 chr5 33456020 33456160 -169629372 + FLAM_A SINE Alu 1 133 0 2397 127 29 59 chr5 33456160 33456251 -169629281 + Tigger2 DNA MER2_type 662 754 -1964 1416 134 40 28 chr5 33456331 33456584 -169628948 + Tigger2 DNA MER2_type 2463 2718 0 2199 144 116 40 chr5 33456630 33457080 -169628452 + L1MB2 LINE L1 5609 6092 -79 1291 234 48 50 chr5 33457414 33457913 -169627619 + L1ME2 LINE L1 4731 5228 -918 2726 205 118 24 chr5 33458203 33459027 -169626505 + L1ME2 LINE L1 5254 6154 -10 22 0 0 0 chr5 33459031 33459053 -169626479 + AT_rich Low_complexity Low_complexity 1 22 0 1697 112 29 54 chr5 33459350 33459627 -169625905 - MER1B DNA MER1_type 0 339 70 24 32 0 0 chr5 33459739 33459770 -169625762 + AT_rich Low_complexity Low_complexity 1 31 0 2387 80 0 3 chr5 33460245 33460544 -169624988 + AluSc SINE Alu 1 298 -11 1750 144 35 11 chr5 33460932 33461217 -169624315 + AluJb SINE Alu 1 292 -20 2233 110 0 0 chr5 33462239 33462538 -169622994 + AluSg1 SINE Alu 1 299 -10 2403 68 10 10 chr5 33463174 33463481 -169622051 + AluSq SINE Alu 1 307 -6 1316 76 6 12 chr5 33463481 33463652 -169621880 + AluSp SINE Alu 134 303 -10 1559 160 35 28 chr5 33464866 33465148 -169620384 + AluJo SINE Alu 11 294 -18 806 166 0 14 chr5 33465408 33465553 -169619979 - FLAM_C SINE Alu 0 143 1 21 57 0 0 chr5 33466228 33466263 -169619269 + AT_rich Low_complexity Low_complexity 1 35 0 1986 136 10 0 chr5 33466334 33466628 -169618904 + AluSx SINE Alu 1 297 -15 949 47 78 8 chr5 33467019 33467147 -169618385 + MER85 DNA T2_type 1 137 -2 21 0 0 0 chr5 33468900 33468921 -169616611 + AT_rich Low_complexity Low_complexity 1 21 0 310 331 75 0 chr5 33469316 33469449 -169616083 - MIR SINE MIR -2 260 118 623 86 0 0 chr5 33469459 33469540 -169615992 - MER51B LTR ERV1 -296 81 1 2119 117 28 0 chr5 33469977 33470268 -169615264 + AluSx SINE Alu 4 302 -10 2216 79 3 60 chr5 33470724 33471042 -169614490 + AluSq SINE Alu 1 300 -13 1837 122 0 85 chr5 33471706 33471843 -169613689 + AluJb SINE Alu 1 148 -164 2477 91 0 0 chr5 33471843 33472152 -169613380 + AluSc SINE Alu 1 309 0 1837 122 0 85 chr5 33472152 33472343 -169613189 + AluJb SINE Alu 148 301 -11 2224 118 113 40 chr5 33472923 33473099 -169612433 + MSTA LTR MaLR 1 163 -265 2341 105 0 0 chr5 33473099 33473405 -169612127 + AluSc SINE Alu 1 306 -3 2224 118 113 40 chr5 33473405 33473626 -169611906 + MSTA LTR MaLR 163 427 -1 1417 196 71 37 chr5 33474296 33474648 -169610884 + MLT1A1 LTR MaLR 1 364 -1 1962 113 0 85 chr5 33474771 33475089 -169610443 + AluSx SINE Alu 5 295 -17 637 306 57 21 chr5 33475844 33476298 -169609234 - MARNA DNA Mariner -17 569 58 2170 93 3 46 chr5 33477534 33477915 -169607617 - AluSx SINE Alu 0 367 1 205 288 151 0 chr5 33478483 33478622 -169606910 - MIR SINE MIR -9 253 94 778 216 43 75 chr5 33478625 33478989 -169606543 + MLT1C LTR MaLR 2 417 -50 1958 127 7 14 chr5 33478997 33479273 -169606259 - AluSq SINE Alu -24 289 16 369 269 0 0 chr5 33479273 33479351 -169606181 + Tigger1 DNA MER2_type 2338 2415 -3 1639 173 23 16 chr5 33479356 33479663 -169605869 - L1MB7 LINE L1 -64 6120 5812 3626 126 66 28 chr5 33479670 33480147 -169605385 - L1MB2 LINE L1 -3 6168 5657 1936 133 23 13 chr5 33480147 33480448 -169605084 - AluSx SINE Alu -8 304 1 3626 126 66 28 chr5 33480448 33480638 -169604894 - L1MB2 LINE L1 -514 5657 5476 243 88 0 0 chr5 33480638 33480672 -169604860 + (TTCCC)n Simple_repeat Simple_repeat 3 36 0 226 135 39 19 chr5 33480674 33480726 -169604806 - L1MB2 LINE L1 -692 5488 5436 2052 143 0 0 chr5 33480728 33481022 -169604510 - AluJb SINE Alu -18 294 1 455 294 92 14 chr5 33481167 33481385 -169604147 - MIR SINE MIR -9 253 19 315 264 106 44 chr5 33481785 33482058 -169603474 + MER95 LTR ERV 10 299 -132 362 205 43 0 chr5 33482133 33482216 -169603316 + AluJ/FLAM SINE Alu 2 66 -236 3632 92 317 0 chr5 33482216 33482843 -169602689 - LTR12 LTR ERV1 0 826 1 6794 113 5 8 chr5 33482922 33484109 -169601423 - Harlequin LTR ERV1 -1 8398 504 756 141 138 15 chr5 33484107 33484376 -169601156 - Harlequin LTR ERV1 -5755 1141 840 * 33766 85 4 6 chr5 33484343 33488778 -169596754 - Harlequin LTR ERV1 -3425 4974 548 1934 137 4 0 chr5 33488778 33489056 -169596476 + AluSx SINE Alu 31 309 -3 209 127 16 48 chr5 33489064 33489127 -169596405 + A-rich Low_complexity Low_complexity 6 66 0 1309 243 146 47 chr5 33489147 33489654 -169595878 + MER34B LTR ERV1 6 562 -3 222 37 0 0 chr5 33489719 33489746 -169595786 + (CA)n Simple_repeat Simple_repeat 2 28 0 180 111 0 0 chr5 33489806 33489833 -169595699 + (TA)n Simple_repeat Simple_repeat 2 28 0 327 49 0 0 chr5 33489868 33489909 -169595623 + (TG)n Simple_repeat Simple_repeat 2 42 0 512 278 134 57 chr5 33489990 33490343 -169595189 + MLT1L LTR MaLR 157 437 -74 583 141 0 0 chr5 33490350 33490435 -169595097 - L1MC1 LINE L1 -14 6319 6235 507 293 47 7 chr5 33490480 33490630 -169594902 - MER34 LTR ERV1 -35 507 352 2949 141 29 41 chr5 33490632 33491105 -169594427 - LTR62 LTR ERVK -2 717 240 2264 98 3 0 chr5 33491105 33491410 -169594122 - AluSp SINE Alu -7 306 1 2183 102 6 29 chr5 33491417 33491731 -169593801 - AluSx SINE Alu -5 307 1 2949 141 29 41 chr5 33491731 33491759 -169593773 - LTR62 LTR ERVK -485 234 214 1288 45 0 0 chr5 33491761 33491918 -169593614 + AluY SINE Alu 148 304 -7 1512 127 14 0 chr5 33491918 33492139 -169593393 - LTR62 LTR ERVK -495 224 1 204 40 0 0 chr5 33492295 33492320 -169593212 + (CA)n Simple_repeat Simple_repeat 2 26 0 664 194 16 0 chr5 33492323 33492452 -169593080 - FRAM SINE Alu -35 141 11 381 301 36 31 chr5 33492514 33492710 -169592822 - MER34 LTR ERV1 -345 197 1 1650 128 91 4 chr5 33492719 33492993 -169592539 - L1MC1 LINE L1 -107 6226 5929 390 202 20 20 chr5 33492993 33493092 -169592440 + MLT1L LTR MaLR 513 611 -4 839 194 7 19 chr5 33493245 33493400 -169592132 + FRAM SINE Alu 2 154 -12 268 281 0 62 chr5 33493495 33493591 -169591941 - MIR3 SINE MIR -5 203 114 2014 127 144 8 chr5 33494059 33494373 -169591159 + MLT2D LTR ERVL 3 374 -40 774 32 0 0 chr5 33494373 33494466 -169591066 + (CA)n Simple_repeat Simple_repeat 1 93 0 2014 127 144 8 chr5 33494466 33494512 -169591020 + MLT2D LTR ERVL 374 412 -2 209 186 0 23 chr5 33495059 33495102 -169590430 + G-rich Low_complexity Low_complexity 4 45 0 439 128 2 4 chr5 33495420 33495496 -169590036 + MSTB2 LTR MaLR 351 454 -3 283 203 49 16 chr5 33495690 33495813 -169589719 + (TA)n Simple_repeat Simple_repeat 2 128 0 852 264 14 9 chr5 33496265 33496481 -169589051 + MER20 DNA MER1_type 3 219 0 2192 150 30 57 chr5 33496696 33496914 -169588618 - MSTB1 LTR MaLR -4 428 227 2794 104 67 2 chr5 33496914 33497316 -169588216 + MSTA LTR MaLR 1 428 0 2192 150 30 57 chr5 33497316 33497537 -169587995 - MSTB1 LTR MaLR -205 227 1 1865 138 0 3 chr5 33497792 33498172 -169587360 + AluSx SINE Alu 1 379 0 2062 89 45 0 chr5 33498172 33498464 -169587068 + AluSc SINE Alu 2 306 -3 303 194 21 54 chr5 33498701 33498794 -169586738 + MER96 DNA MER1_type? 1 90 -85 2083 92 0 49 chr5 33499594 33499977 -169585555 - AluSx SINE Alu 0 367 1 270 296 148 0 chr5 33500545 33500687 -169584845 - MIR SINE MIR -9 253 91 1200 194 136 74 chr5 33500687 33501059 -169584473 + MLT1C LTR MaLR 2 441 -64 1932 131 7 14 chr5 33501059 33501350 -169584182 - AluSq SINE Alu -24 289 1 1200 194 136 74 chr5 33501350 33501397 -169584135 + MLT1C LTR MaLR 441 484 -21 230 234 0 0 chr5 33501415 33501462 -169584070 - MIR SINE MIR -168 94 48 266 108 0 0 chr5 33501734 33501771 -169583761 + MIR SINE MIR 94 130 -78 2162 105 0 7 chr5 33501867 33502163 -169583369 + AluSg SINE Alu 1 294 -16 743 133 9 0 chr5 33502163 33502276 -169583256 - L1PB3 LINE L1 -9 6145 6032 23 0 0 0 chr5 33502322 33502345 -169583187 + AT_rich Low_complexity Low_complexity 1 23 0 1974 125 10 6 chr5 33502437 33502748 -169582784 + AluJb SINE Alu 1 312 0 188 111 28 0 chr5 33503473 33503509 -169582023 + (TTA)n Simple_repeat Simple_repeat 2 38 0 245 62 0 0 chr5 33503754 33503786 -169581746 + L1MB7 LINE L1 6008 6039 -145 1912 93 47 47 chr5 33503844 33504144 -169581388 - AluSx SINE Alu -12 300 1 712 118 33 92 chr5 33504145 33504272 -169581260 + L1MB7 LINE L1 6022 6140 -44 1900 113 39 0 chr5 33504272 33504554 -169580978 - AluSc SINE Alu -16 293 1 712 118 33 92 chr5 33504554 33504579 -169580953 + L1MB7 LINE L1 6140 6165 -19 198 261 0 43 chr5 33504585 33504654 -169580878 - L2 LINE L2 0 3313 3248 394 325 65 6 chr5 33504656 33504825 -169580707 - MIR SINE MIR 0 262 84 2823 13 0 0 chr5 33504893 33505210 -169580322 - AluYb8 SINE Alu -1 317 1 402 196 10 49 chr5 33505363 33505465 -169580067 + MLT1J1 LTR MaLR 349 446 0 413 309 18 12 chr5 33505630 33505795 -169579737 - MLT1J LTR MaLR -31 480 315 734 96 0 80 chr5 33505957 33506082 -169579450 - FLAM_C SINE Alu -2 141 27 212 234 62 47 chr5 33506292 33506356 -169579176 - MIR SINE MIR -196 66 2 2200 187 51 26 chr5 33506419 33506912 -169578620 - MLT1D LTR MaLR 0 505 1 1781 116 3 88 chr5 33507238 33507557 -169577975 + AluSx SINE Alu 1 292 -20 293 231 19 48 chr5 33507710 33507814 -169577718 - MER96 DNA MER1_type? -74 101 1 889 158 6 12 chr5 33508049 33508213 -169577319 - AluJo SINE Alu -149 163 1 486 117 48 78 chr5 33508248 33508351 -169577181 + Tigger1 DNA MER2_type 30 129 -2289 1625 194 0 22 chr5 33508352 33508671 -169576861 - AluJb SINE Alu 0 312 1 757 181 0 28 chr5 33508671 33508815 -169576717 - AluJo SINE Alu -171 141 2 7466 107 56 99 chr5 33508815 33509450 -169576082 + Tigger1 DNA MER2_type 965 1626 -792 1552 178 51 4 chr5 33509450 33509726 -169575806 + AluJb SINE Alu 1 289 -23 7466 107 56 99 chr5 33509726 33510400 -169575132 + Tigger1 DNA MER2_type 1626 2328 -90 1859 147 0 0 chr5 33510400 33510686 -169574846 - AluSx SINE Alu -26 286 1 7466 107 56 99 chr5 33510686 33510804 -169574728 + Tigger1 DNA MER2_type 2328 2333 -85 2058 125 0 0 chr5 33510804 33511101 -169574431 - AluSx SINE Alu -15 297 1 2238 113 17 59 chr5 33512081 33512167 -169573365 - L1MB3 LINE L1 -1 6182 6094 1587 178 10 7 chr5 33512167 33512476 -169573056 - AluJo SINE Alu -2 310 1 2238 113 17 59 chr5 33512476 33512621 -169572911 - L1MB3 LINE L1 -89 6094 5944 2027 120 3 3 chr5 33512621 33512920 -169572612 - AluSq SINE Alu -14 299 1 2238 113 17 59 chr5 33512920 33513093 -169572439 - L1MB3 LINE L1 -239 5944 5794 1943 124 0 20 chr5 33513104 33513403 -169572129 + AluJo SINE Alu 9 301 -11 2107 105 7 0 chr5 33513790 33514094 -169571438 - AluSx SINE Alu -2 310 5 2092 102 7 0 chr5 33514152 33514447 -169571085 - AluSq SINE Alu -16 297 1 820 113 14 50 chr5 33514649 33514790 -169570742 - AluJb SINE Alu -175 137 2 2006 118 7 3 chr5 33515346 33515643 -169569889 - AluSx SINE Alu -8 304 7 247 129 188 82 chr5 33515803 33515888 -169569644 + MLT1F1 LTR MaLR 435 528 -39 289 302 245 0 chr5 33516646 33516752 -169568780 - L2 LINE L2 0 3272 3141 1808 119 31 3 chr5 33516833 33517127 -169568405 + AluSq SINE Alu 1 302 -11 200 326 149 0 chr5 33517275 33517450 -169568082 - L2 LINE L2 -337 2977 2777 1956 159 0 0 chr5 33517452 33517761 -169567771 - AluSx SINE Alu -3 309 1 957 204 35 10 chr5 33517786 33517987 -169567545 - AluJo SINE Alu -6 306 101 1717 151 3 57 chr5 33517988 33518305 -169567227 - AluJb SINE Alu -11 301 2 1253 291 132 14 chr5 33518377 33518869 -169566663 - L2 LINE L2 -654 2660 2111 578 264 8 78 chr5 33519317 33519575 -169565957 - L1MC5 LINE L1 -26 7935 7696 706 206 15 0 chr5 33519579 33519710 -169565822 - FLAM_A SINE Alu 0 133 1 1878 121 11 0 chr5 33519806 33520118 -169565414 + AluSx SINE Alu 1 315 0 2073 127 29 19 chr5 33520118 33520486 -169565046 + L1MB1 LINE L1 5792 6167 -1 2338 94 0 0 chr5 33520513 33520822 -169564710 + AluSq SINE Alu 1 309 -4 931 215 51 14 chr5 33521141 33521355 -169564177 + MIR SINE MIR 41 262 0 257 303 41 25 chr5 33522116 33522238 -169563294 + LTR67 LTR ERVL 428 551 -6 556 178 10 0 chr5 33522892 33522993 -169562539 + MLT1A2 LTR MaLR 1 102 -272 692 193 37 15 chr5 33522999 33523134 -169562398 + MLT1A2 LTR MaLR 236 373 -1 544 259 222 32 chr5 33523135 33523482 -169562050 + MLT1L LTR MaLR 30 442 -173 238 262 47 28 chr5 33523510 33523617 -169561915 + MLT1L LTR MaLR 507 615 0 589 259 8 2 chr5 33523727 33523860 -169561672 + MIR SINE MIR 3 133 -75 2154 95 0 3 chr5 33523884 33524169 -169561363 - AluSq SINE Alu -29 284 1 269 216 14 14 chr5 33524193 33524267 -169561265 + MER20B DNA MER1_type 232 305 -478 445 210 25 50 chr5 33524267 33524386 -169561146 + MIR SINE MIR 143 258 -4 1287 71 6 0 chr5 33524509 33524678 -169560854 - AluSp SINE Alu -7 306 137 1962 120 43 0 chr5 33524680 33524979 -169560553 - AluSx SINE Alu 0 312 1 1472 266 34 15 chr5 33525347 33525757 -169559775 + MER20B DNA MER1_type 4 421 -362 820 80 9 0 chr5 33525780 33525892 -169559640 + AluSp SINE Alu 1 113 -200 1997 121 0 24 chr5 33525895 33526193 -169559339 - AluSq SINE Alu -22 291 1 1675 260 57 43 chr5 33526204 33526617 -169558915 - L1ME3A LINE L1 0 6170 5743 1749 154 47 70 chr5 33526617 33526659 -169558873 - THE1C LTR MaLR 0 375 334 2038 113 40 0 chr5 33526659 33526959 -169558573 + AluSx SINE Alu 1 312 0 1749 154 47 70 chr5 33526959 33527300 -169558232 - THE1C LTR MaLR -41 334 1 1675 260 57 43 chr5 33527300 33527539 -169557993 - L1ME3A LINE L1 -427 5743 5509 1160 149 67 37 chr5 33528271 33528597 -169556935 - MSTD LTR MaLR 0 396 16 183 365 0 0 chr5 33528597 33528660 -169556872 + MIR3 SINE MIR 115 177 -31 * 269 282 115 63 chr5 33528645 33528819 -169556713 - MER5A DNA MER1_type -6 183 1 2388 158 58 27 chr5 33529511 33529852 -169555680 - MSTB LTR MaLR -1 425 96 1820 140 70 20 chr5 33529852 33530209 -169555323 + THE1C LTR MaLR 1 375 0 9724 120 18 65 chr5 33530211 33530535 -169554997 + THE1C-int LTR MaLR 3 341 -1239 1604 152 48 4 chr5 33530535 33530827 -169554705 - AluSx SINE Alu 0 304 1 9724 120 18 65 chr5 33530827 33530883 -169554649 + THE1C-int LTR MaLR 341 398 -1182 2020 138 0 3 chr5 33530883 33531188 -169554344 - AluSq SINE Alu -5 308 5 9724 120 18 65 chr5 33531188 33532462 -169553070 + THE1C-int LTR MaLR 398 1580 0 1914 130 82 25 chr5 33532462 33532817 -169552715 + THE1C LTR MaLR 1 375 0 2388 158 58 27 chr5 33532817 33532883 -169552649 - MSTB LTR MaLR -329 97 1 444 277 77 0 chr5 33533116 33533246 -169552286 + MIR3 SINE MIR 30 169 -39 477 194 153 14 chr5 33533254 33533398 -169552134 + MER104 DNA Tc2 14 177 -3 405 312 102 76 chr5 33533536 33534104 -169551428 - L2 LINE L2 -227 3045 2452 1649 152 7 39 chr5 33534104 33534413 -169551119 + AluJb SINE Alu 14 312 0 405 312 102 76 chr5 33534413 33534604 -169550928 - L2 LINE L2 -820 2452 2267 680 209 264 29 chr5 33534649 33534922 -169550610 + LTR33 LTR ERVL 15 351 -170 227 283 0 0 chr5 33534923 33534976 -169550556 + LTR33 LTR ERVL 468 520 -1 1869 124 3 39 chr5 33535641 33535947 -169549585 + AluSp SINE Alu 1 295 -18 1860 310 64 43 chr5 33535972 33536945 -169548587 + HERVL LTR ERVL 2979 3971 -1683 1633 197 124 50 chr5 33536947 33537089 -169548443 + MLT1D LTR MaLR 31 161 -344 1936 152 3 3 chr5 33537089 33537399 -169548133 - AluJo SINE Alu -2 310 1 1633 197 124 50 chr5 33537399 33537488 -169548044 + MLT1D LTR MaLR 161 242 -263 1928 82 56 4 chr5 33537488 33537796 -169547736 + AluSq SINE Alu 1 322 0 1633 197 124 50 chr5 33537796 33537877 -169547655 + MLT1D LTR MaLR 242 316 -189 1913 117 13 23 chr5 33537877 33538186 -169547346 - AluSx SINE Alu -6 306 1 1633 197 124 50 chr5 33538186 33538312 -169547220 + MLT1D LTR MaLR 316 505 0 369 281 10 10 chr5 33538312 33538408 -169547124 + HERVL LTR ERVL 4023 4118 -1646 427 191 0 0 chr5 33538415 33538483 -169547049 - U4 snRNA snRNA -77 68 1 2113 119 0 3 chr5 33538487 33538797 -169546735 - AluSx SINE Alu -3 309 1 744 118 27 0 chr5 33538817 33538927 -169546605 - AluJo SINE Alu -177 135 23 311 179 0 18 chr5 33538943 33538999 -169546533 + HERVL LTR ERVL 4107 4161 -1603 658 267 20 59 chr5 33538999 33539171 -169546361 - MIR SINE MIR -59 203 39 1027 173 34 29 chr5 33539171 33539379 -169546153 - MER3 DNA MER1_type 0 209 1 658 267 20 59 chr5 33539379 33539408 -169546124 - MIR SINE MIR -223 39 10 311 256 0 181 chr5 33539770 33539837 -169545695 - L2 LINE L2 -1 3312 3289 1944 134 7 0 chr5 33539837 33540128 -169545404 - AluJb SINE Alu -19 293 1 311 256 0 181 chr5 33540128 33540220 -169545312 - L2 LINE L2 -24 3289 3182 322 248 20 30 chr5 33540547 33540648 -169544884 + MIR SINE MIR 102 201 -61 2115 111 0 0 chr5 33540675 33540973 -169544559 - AluSx SINE Alu -14 298 1 306 118 15 29 chr5 33540921 33540989 -169544543 - AluSp SINE Alu -116 187 121 227 313 100 40 chr5 33540979 33541129 -169544403 - L2 LINE L2 -602 2712 2554 * 1125 148 0 0 chr5 33541167 33541343 -169544189 + L1MB7 LINE L1 5623 5798 -386 1249 132 29 5 chr5 33541344 33541548 -169543984 + L1MB7 LINE L1 5850 6058 -126 866 223 48 31 chr5 33541548 33541777 -169543755 - MIR SINE MIR -27 235 3 430 288 198 37 chr5 33542087 33542562 -169542970 - L2 LINE L2 -1 3271 2729 2116 132 7 0 chr5 33542802 33543106 -169542426 + AluSx SINE Alu 1 306 -6 302 280 133 35 chr5 33543143 33543154 -169542378 - MIR SINE MIR -35 227 218 1943 151 3 13 chr5 33543154 33543452 -169542080 + AluJb SINE Alu 1 295 -17 302 280 133 35 chr5 33543452 33543583 -169541949 - MIR SINE MIR -44 218 71 2028 90 36 7 chr5 33544339 33544640 -169540892 - AluSg SINE Alu 0 310 1 687 245 217 31 chr5 33544950 33545305 -169540227 + L2 LINE L2 2854 3274 -39 22 35 0 0 chr5 33545711 33545740 -169539792 + GC_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr5 33545787 33545829 -169539703 + GC_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr5 33546181 33546210 -169539322 + GC_rich Low_complexity Low_complexity 1 29 0 183 42 0 0 chr5 33546388 33546412 -169539120 + (CGG)n Simple_repeat Simple_repeat 2 25 0 247 151 41 0 chr5 33546536 33546609 -169538923 + (CCCGG)n Simple_repeat Simple_repeat 2 77 0 702 120 77 8 chr5 33547609 33547726 -169537806 - FLAM_C SINE Alu -8 125 1 427 153 194 14 chr5 33547861 33548005 -169537527 - MER104 DNA Tc2 -5 175 6 406 95 40 14 chr5 33548217 33548291 -169537241 - L1PB3 LINE L1 -9 6145 6070 25 51 0 0 chr5 33548593 33548632 -169536900 + AT_rich Low_complexity Low_complexity 1 39 0 785 170 157 0 chr5 33549126 33549285 -169536247 - MER8 DNA MER2_type -55 184 1 2059 116 3 10 chr5 33549374 33549677 -169535855 + AluSx SINE Alu 1 301 -11 2340 95 3 0 chr5 33549980 33550285 -169535247 - AluSx SINE Alu -6 306 1 1040 160 12 0 chr5 33550823 33550992 -169534540 - FRAM SINE Alu -5 171 1 278 298 107 25 chr5 33551637 33551758 -169533774 + MIR SINE MIR 5 135 -127 2314 70 13 3 chr5 33552089 33552391 -169533141 + AluSp SINE Alu 1 305 -8 237 295 129 21 chr5 33552553 33552878 -169532654 + L1M4 LINE L1 4485 4844 -1302 219 284 0 108 chr5 33553332 33553406 -169532126 - L2 LINE L2 -89 3183 3118 265 235 29 15 chr5 33553588 33553656 -169531876 + MIR SINE MIR 29 97 -165 275 262 12 60 chr5 33553765 33553849 -169531683 - L1ME3A LINE L1 -66 6104 6025 545 221 15 23 chr5 33553908 33554039 -169531493 + FLAM_C SINE Alu 9 138 -5 256 262 16 0 chr5 33554046 33554107 -169531425 + MIR SINE MIR 201 262 0 225 245 0 20 chr5 33554144 33554193 -169531339 + L2 LINE L2 3217 3264 -8 2546 51 0 10 chr5 33554225 33554537 -169530995 + AluY SINE Alu 1 309 -2 197 361 39 31 chr5 33555078 33555208 -169530324 + L2 LINE L2 2607 2737 -577 273 283 101 0 chr5 33555323 33555422 -169530110 + MER46C DNA MER2_type 87 195 -143 1427 186 47 24 chr5 33555467 33555763 -169529769 + AluJb SINE Alu 1 303 -9 4505 170 82 44 chr5 33555794 33556594 -169528938 + Looper DNA T2_type 6 775 -783 1488 168 45 11 chr5 33556594 33556880 -169528652 - AluJb SINE Alu -14 298 3 4505 170 82 44 chr5 33556880 33557509 -169528023 + Looper DNA T2_type 775 1548 -10 1569 184 44 17 chr5 33557649 33557942 -169527590 + AluJb SINE Alu 1 301 -11 23 0 0 0 chr5 33557978 33558001 -169527531 + AT_rich Low_complexity Low_complexity 1 23 0 620 135 0 0 chr5 33558051 33558140 -169527392 + AluJo SINE Alu 1 89 -223 866 178 45 5 chr5 33558141 33558343 -169527189 + L1M3 LINE L1 5266 5475 -693 322 216 196 0 chr5 33558349 33558446 -169527086 - Looper DNA T2_type -164 1394 1279 229 217 0 0 chr5 33558444 33558490 -169527042 - Alu SINE Alu -54 248 203 * 1094 174 38 24 chr5 33558490 33558689 -169526843 + AluJo SINE Alu 95 299 -13 586 208 97 39 chr5 33558689 33558843 -169526689 + AluJo/FRAM SINE Alu 137 299 -3 1094 174 38 24 chr5 33558843 33558856 -169526676 + AluJo SINE Alu 299 310 -2 1881 168 7 3 chr5 33559583 33559887 -169525645 - AluJb SINE Alu -7 305 1 519 270 93 28 chr5 33559962 33560501 -169525031 - L1MEd LINE L1 -4865 1254 788 1249 181 63 98 chr5 33560580 33560895 -169524637 - AluJo SINE Alu -8 304 1 502 130 190 0 chr5 33561016 33561116 -169524416 + MER46A DNA MER2_type 118 236 0 358 77 0 19 chr5 33561237 33561289 -169524243 - AluSc SINE Alu -154 145 95 2580 48 0 3 chr5 33561396 33561706 -169523826 + AluY SINE Alu 1 309 -2 220 310 14 14 chr5 33561980 33562051 -169523481 + MER5C DNA MER1_type 4 74 -250 800 205 6 31 chr5 33562098 33562259 -169523273 - AluJo/FRAM SINE Alu -22 290 134 2068 84 8 0 chr5 33562259 33562520 -169523012 - AluSx SINE Alu -16 296 34 4259 198 76 42 chr5 33562547 33563290 -169522242 - L1 LINE L1 -978 5168 4452 1121 163 202 31 chr5 33563290 33563548 -169521984 - AluJb SINE Alu 0 302 1 4259 198 76 42 chr5 33563548 33563766 -169521766 - L1 LINE L1 -1694 4452 4243 1879 152 0 13 chr5 33563766 33564068 -169521464 - AluSx SINE Alu -14 298 1 4259 198 76 42 chr5 33564068 33564402 -169521130 - L1 LINE L1 -1903 4243 3828 304 259 0 47 chr5 33564460 33564545 -169520987 + MIR SINE MIR 15 95 -167 825 193 293 7 chr5 33564754 33564861 -169520671 - Charlie1 DNA MER1_type -4 2757 2682 2170 101 10 3 chr5 33564861 33565158 -169520374 + AluSx SINE Alu 1 299 -13 825 193 293 7 chr5 33565158 33565442 -169520090 - Charlie1 DNA MER1_type -79 2682 1 226 279 34 62 chr5 33565460 33565639 -169519893 - HAL1 LINE L1 -109 2398 2225 2168 90 40 7 chr5 33566121 33566421 -169519111 - AluY SINE Alu -1 310 1 929 236 214 29 chr5 33566502 33567049 -169518483 - HAL1 LINE L1 -590 1917 1270 33 0 0 0 chr5 33567312 33567345 -169518187 + AT_rich Low_complexity Low_complexity 1 33 0 1511 162 70 4 chr5 33567345 33567617 -169517915 - AluJo SINE Alu -22 290 1 1940 159 3 10 chr5 33567860 33568168 -169517364 - AluJo SINE Alu -6 306 1 337 263 21 0 chr5 33568321 33568416 -169517116 + MER94 DNA DNA 4 100 -34 550 275 99 77 chr5 33568970 33569425 -169516107 - L3 LINE CR1 -199 1378 914 1005 147 36 62 chr5 33569846 33570071 -169515461 - MER20 DNA MER1_type 0 219 1 2221 122 0 0 chr5 33571045 33571341 -169514191 + AluSx SINE Alu 1 296 -16 24 53 0 0 chr5 33572299 33572337 -169513195 + AT_rich Low_complexity Low_complexity 1 38 0 2478 72 0 0 chr5 33572398 33572704 -169512828 - AluY SINE Alu -5 306 1 1200 59 0 0 chr5 33573615 33573768 -169511764 + L1PA5 LINE L1 6000 6152 -2 403 297 97 18 chr5 33573822 33573987 -169511545 + MIR3 SINE MIR 23 200 -8 2385 96 3 0 chr5 33574049 33574350 -169511182 - AluSp SINE Alu -11 302 1 196 261 148 0 chr5 33574451 33574539 -169510993 + MIR SINE MIR 42 142 -66 896 167 0 0 chr5 33574586 33574718 -169510814 + FRAM SINE Alu 34 165 -11 279 0 0 0 chr5 33575166 33575197 -169510335 + (CA)n Simple_repeat Simple_repeat 1 31 0 222 319 83 12 chr5 33576463 33576683 -169508849 - L2 LINE L2 -357 2915 2695 25 51 0 0 chr5 33577149 33577188 -169508344 + AT_rich Low_complexity Low_complexity 1 39 0 354 0 89 0 chr5 33577434 33577490 -169508042 + T-rich Low_complexity Low_complexity 1 61 0 2019 100 4 18 chr5 33577499 33577779 -169507753 - AluSx SINE Alu -36 276 1 1795 243 112 70 chr5 33577784 33578730 -169506802 - L1MC4 LINE L1 -15 8027 7019 1140 205 107 25 chr5 33578730 33578976 -169506556 + MER2 DNA MER2_type 1 280 -64 2132 135 0 0 chr5 33578976 33579272 -169506260 - AluSx SINE Alu -13 299 4 1140 205 107 25 chr5 33579272 33579342 -169506190 + MER2 DNA MER2_type 280 343 -1 1795 243 112 70 chr5 33579342 33579592 -169505940 - L1MC4 LINE L1 -1023 7019 6781 268 281 94 35 chr5 33579592 33579763 -169505769 - L1ME LINE L1 -303 5818 5638 1831 141 28 24 chr5 33580064 33580355 -169505177 - AluJb SINE Alu -20 292 1 1251 143 109 13 chr5 33580372 33580602 -169504930 - AluJb SINE Alu -3 309 58 718 129 245 22 chr5 33580688 33580827 -169504705 - AluJb SINE Alu -9 303 134 289 221 15 15 chr5 33580909 33580977 -169504555 - MER2 DNA MER2_type -1 344 277 367 134 15 15 chr5 33580980 33581047 -169504485 + AluS SINE Alu 4 70 -233 216 0 0 0 chr5 33582021 33582045 -169503487 + (T)n Simple_repeat Simple_repeat 1 24 0 188 324 196 0 chr5 33583062 33583164 -169502368 + L2 LINE L2 3141 3262 -10 23 33 0 0 chr5 33583255 33583285 -169502247 + AT_rich Low_complexity Low_complexity 1 30 0 248 145 0 16 chr5 33583394 33583456 -169502076 + (CAG)n Simple_repeat Simple_repeat 1 61 0 385 238 66 74 chr5 33585411 33585533 -169499999 + MIR3 SINE MIR 43 163 -45 181 100 33 0 chr5 33585587 33585617 -169499915 + MIR3 SINE MIR 168 198 -10 1192 191 5 5 chr5 33585686 33585901 -169499631 + AluJb SINE Alu 75 289 -23 220 257 57 76 chr5 33587079 33587184 -169498348 + MIR SINE MIR 92 194 -68 403 341 130 18 chr5 33587628 33587923 -169497609 + L2 LINE L2 1476 1737 -1577 1661 186 3 40 chr5 33587923 33588246 -169497286 - AluJb SINE Alu -1 311 1 403 341 130 18 chr5 33588246 33588604 -169496928 + L2 LINE L2 1737 2202 -1112 404 347 88 60 chr5 33588961 33589540 -169495992 + L2 LINE L2 2672 3267 -5 1377 163 62 56 chr5 33589876 33590164 -169495368 - AluJb SINE Alu -22 290 1 28 29 0 0 chr5 33590472 33590507 -169495025 + AT_rich Low_complexity Low_complexity 1 35 0 243 296 244 7 chr5 33591276 33591411 -169494121 + MIR SINE MIR 67 233 -29 2175 130 0 3 chr5 33591428 33591736 -169493796 - AluSg SINE Alu -3 307 1 1086 146 12 2 chr5 33591802 33592055 -169493477 + AluSx SINE Alu 1 310 0 2582 56 7 3 chr5 33592574 33592880 -169492652 + AluY SINE Alu 1 307 -4 2016 114 17 27 chr5 33592975 33593272 -169492260 + AluSg SINE Alu 1 294 -16 1305 99 0 68 chr5 33593972 33594193 -169491339 - AluSg/x SINE Alu -18 292 87 968 72 7 29 chr5 33594308 33594446 -169491086 - AluSg SINE Alu -175 135 1 2291 127 36 69 chr5 33594616 33594678 -169490854 - Tigger2a DNA MER2_type -2274 434 371 1633 157 34 0 chr5 33594678 33594945 -169490587 - AluJb SINE Alu -16 296 21 2291 127 36 69 chr5 33594945 33595331 -169490201 - Tigger2a DNA MER2_type -2337 371 1 2019 153 16 62 chr5 33596236 33596433 -169489099 - L1MB8 LINE L1 -87 6091 5886 345 124 0 186 chr5 33596433 33596530 -169489002 - MADE1 DNA Mariner 0 80 2 2019 153 16 62 chr5 33596530 33596764 -169488768 - L1MB8 LINE L1 -292 5886 5680 1644 171 60 106 chr5 33597148 33597263 -169488269 - Charlie1b DNA MER1_type -2238 523 404 2306 84 10 3 chr5 33597263 33597559 -169487973 + AluSp SINE Alu 1 298 -15 1644 171 60 106 chr5 33597559 33597900 -169487632 - Charlie1b DNA MER1_type -2357 404 94 2053 147 0 0 chr5 33597900 33598192 -169487340 - AluSx SINE Alu -20 292 1 1644 171 60 106 chr5 33598192 33598282 -169487250 - Charlie1b DNA MER1_type -2667 94 1 295 350 17 8 chr5 33598617 33598734 -169486798 - L2 LINE L2 -22 3291 3174 1429 159 107 15 chr5 33598871 33599141 -169486391 + AluJb SINE Alu 1 295 -17 617 180 0 0 chr5 33599548 33599648 -169485884 - Tigger7 DNA MER2_type 0 2487 2388 * 1172 227 51 8 chr5 33599645 33599901 -169485631 - Tigger7 DNA MER2_type -2220 267 1 359 238 56 88 chr5 33599901 33600121 -169485411 + Charlie8 DNA MER1_type 175 477 -1940 2068 122 0 17 chr5 33600743 33601037 -169484495 - AluSx SINE Alu -23 289 1 302 204 10 3 chr5 33601285 33601367 -169484165 - AluJb SINE Alu -49 253 139 694 203 0 8 chr5 33601424 33601547 -169483985 + FLAM_C SINE Alu 3 124 -19 201 74 0 0 chr5 33602029 33602056 -169483476 + (CATG)n Simple_repeat Simple_repeat 2 28 0 2441 173 63 4 chr5 33602903 33603424 -169482108 + MER57B-int LTR ERV1 3592 4143 -3673 * 15419 132 32 45 chr5 33603422 33603666 -169481866 + MER57B-int LTR ERV1 1853 2099 -5438 2281 103 0 0 chr5 33603666 33603957 -169481575 + AluY SINE Alu 1 291 -20 15419 132 32 45 chr5 33603957 33604066 -169481466 + MER57B-int LTR ERV1 2099 2208 -5329 2240 111 3 0 chr5 33604066 33604355 -169481177 + AluSp SINE Alu 1 290 -23 15419 132 32 45 chr5 33604355 33604790 -169480742 + MER57B-int LTR ERV1 2208 2647 -4890 2582 56 0 3 chr5 33604790 33605093 -169480439 - AluY SINE Alu -9 302 1 15419 132 32 45 chr5 33605093 33606025 -169479507 + MER57B-int LTR ERV1 2647 3590 -3947 5290 106 28 7 chr5 33606025 33606788 -169478744 + MER4E LTR ERV1 1 779 0 15419 132 32 45 chr5 33606788 33608032 -169477500 + MER57B-int LTR ERV1 3590 7146 -391 739 114 23 38 chr5 33608032 33608163 -169477369 + LTR54B LTR ERV1 3 131 -367 1391 108 147 9 chr5 33608166 33608398 -169477134 + MER57B-int LTR ERV1 7274 7537 0 2528 127 13 80 chr5 33608398 33608662 -169476870 + MER57B LTR ERV1 1 222 -212 2515 57 0 3 chr5 33608662 33608961 -169476571 - AluY SINE Alu -13 298 1 2528 127 13 80 chr5 33608961 33609159 -169476373 + MER57B LTR ERV1 222 432 -2 180 0 0 0 chr5 33609192 33609212 -169476320 + (TA)n Simple_repeat Simple_repeat 1 20 0 1482 213 7 0 chr5 33609336 33609613 -169475919 + AluJb SINE Alu 1 279 -33 189 0 0 0 chr5 33609619 33609640 -169475892 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 2261 99 0 0 chr5 33609821 33610137 -169475395 + AluSx SINE Alu 1 316 0 744 176 0 8 chr5 33610394 33610519 -169475013 + FLAM_A SINE Alu 1 124 -9 240 214 0 0 chr5 33612350 33612406 -169473126 + (CA)n Simple_repeat Simple_repeat 1 56 0 266 276 13 0 chr5 33612995 33613071 -169472461 + MIR SINE MIR 69 145 -63 2486 81 3 0 chr5 33613595 33613905 -169471627 + AluSx SINE Alu 1 311 -1 2183 128 0 0 chr5 33613916 33614214 -169471318 + AluSx SINE Alu 1 298 -14 1906 163 0 0 chr5 33614591 33614917 -169470615 - AluJb SINE Alu 0 326 1 2506 78 3 0 chr5 33614926 33615233 -169470299 - AluY SINE Alu -3 308 1 2018 115 4 4 chr5 33615321 33615599 -169469933 + AluSx SINE Alu 35 312 0 668 270 77 31 chr5 33615692 33615914 -169469618 - MIR SINE MIR -27 235 4 250 259 80 33 chr5 33615927 33615972 -169469560 - L1MC/D LINE L1 -526 5595 5554 1647 149 101 4 chr5 33615972 33616248 -169469284 - AluSx SINE Alu -9 303 1 250 259 80 33 chr5 33616248 33616352 -169469180 - L1MC/D LINE L1 -567 5554 5499 769 197 0 0 chr5 33616956 33617088 -169468444 + AluJb SINE Alu 2 133 -179 2484 92 0 0 chr5 33617134 33617437 -169468095 - AluSp SINE Alu -5 308 6 208 247 148 37 chr5 33617512 33617593 -169467939 - L2 LINE L2 -1 3271 3182 27 0 0 0 chr5 33618035 33618062 -169467470 + AT_rich Low_complexity Low_complexity 1 27 0 648 106 0 0 chr5 33618108 33618202 -169467330 - AluY SINE Alu 0 311 218 210 226 36 12 chr5 33618811 33618895 -169466637 + (CA)n Simple_repeat Simple_repeat 1 86 0 340 289 58 42 chr5 33622361 33622402 -169463130 - MLT1L LTR MaLR -248 367 328 2623 146 19 5 chr5 33622402 33622820 -169462712 + MER61B LTR ERV1 1 424 -1 340 289 58 42 chr5 33622820 33622968 -169462564 - MLT1L LTR MaLR -287 328 175 416 156 0 0 chr5 33622997 33623061 -169462471 + MER5A DNA MER1_type 17 80 -109 1416 164 0 9 chr5 33623067 33623298 -169462234 + AluSx SINE Alu 11 239 -73 439 150 21 34 chr5 33623326 33623426 -169462106 + MER5A DNA MER1_type 50 151 -32 2062 186 55 4 chr5 33625091 33625543 -169459989 + L1 LINE L1 3991 4465 -1681 274 148 229 0 chr5 33625575 33625636 -169459896 + AluJ/FRAM SINE Alu 223 297 -5 1979 118 14 3 chr5 33625641 33625938 -169459594 + AluSx SINE Alu 7 306 -6 1356 118 99 9 chr5 33625939 33626160 -169459372 + MSTA LTR MaLR 188 428 0 863 162 42 65 chr5 33626161 33626377 -169459155 - MSTB1 LTR MaLR -221 211 1 828 190 86 19 chr5 33626805 33627027 -169458505 + MER21B LTR ERV1 548 857 -74 275 181 69 0 chr5 33627113 33627185 -169458347 + L1MC4 LINE L1 7965 8041 -1 2026 122 24 0 chr5 33627193 33627487 -169458045 + AluSx SINE Alu 1 301 -11 428 125 16 0 chr5 33627943 33628007 -169457525 + MLT2B2 LTR ERVL 348 412 -103 366 115 0 0 chr5 33628010 33628071 -169457461 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 2086 145 163 62 chr5 33628074 33628517 -169457015 - MLT2B3 LTR ERVL 0 554 53 1948 127 18 0 chr5 33628517 33628800 -169456732 - AluSx SINE Alu -15 297 10 2086 145 163 62 chr5 33628800 33628859 -169456673 - MLT2B3 LTR ERVL -501 53 1 295 167 0 0 chr5 33628861 33628909 -169456623 + MLT2C2 LTR ERVL 417 464 0 311 143 102 92 chr5 33628909 33629007 -169456525 + L1MB3 LINE L1 6084 6182 -1 1393 172 14 27 chr5 33629588 33629885 -169455647 + AluJo SINE Alu 1 293 -19 526 100 56 0 chr5 33629897 33629987 -169455545 + L1MB4 LINE L1 6086 6180 0 11510 71 26 6 chr5 33631085 33632683 -169452849 + HERV9 LTR ERV1 3049 4678 -3721 1498 174 40 16 chr5 33632894 33633198 -169452334 - L1MB7 LINE L1 -62 6122 5812 3205 128 81 40 chr5 33633205 33633683 -169451849 - L1MB2 LINE L1 -3 6168 5654 1835 120 35 7 chr5 33633683 33633967 -169451565 - AluSx SINE Alu -20 292 1 3205 128 81 40 chr5 33633967 33634154 -169451378 - L1MB2 LINE L1 -517 5654 5476 243 88 0 0 chr5 33634154 33634188 -169451344 + (TTCCC)n Simple_repeat Simple_repeat 3 36 0 226 135 39 19 chr5 33634190 33634242 -169451290 - L1MB2 LINE L1 -692 5488 5436 985 196 25 0 chr5 33634244 33634443 -169451089 - AluJb SINE Alu -19 293 90 1456 263 34 17 chr5 33634867 33635278 -169450254 + MER20B DNA MER1_type 4 421 -362 944 71 0 0 chr5 33635301 33635414 -169450118 + AluSp SINE Alu 1 113 -200 1783 127 28 31 chr5 33635417 33635708 -169449824 - AluSx SINE Alu -22 290 1 1303 267 59 44 chr5 33635719 33636132 -169449400 - L1ME3A LINE L1 0 6170 5744 1728 157 53 58 chr5 33636132 33636174 -169449358 - THE1C LTR MaLR 0 375 334 2052 118 42 0 chr5 33636174 33636461 -169449071 + AluSx SINE Alu 1 299 -13 1728 157 53 58 chr5 33636461 33636795 -169448737 - THE1C LTR MaLR -41 334 1 1303 267 59 44 chr5 33636795 33636954 -169448578 - L1ME3A LINE L1 -426 5744 5589 861 48 105 0 chr5 33638899 33639023 -169446509 + MER85 DNA T2_type 1 137 -2 21 0 0 0 chr5 33640743 33640764 -169444768 + AT_rich Low_complexity Low_complexity 1 21 0 194 311 143 8 chr5 33641156 33641275 -169444257 - MIR SINE MIR -9 253 119 623 86 0 0 chr5 33641285 33641366 -169444166 - MER51B LTR ERV1 -296 81 1 269 135 0 0 chr5 33642960 33642997 -169442535 - MER57A LTR ERV1 -72 331 295 2204 114 10 0 chr5 33644891 33645197 -169440335 + AluSx SINE Alu 1 309 -3 777 249 0 6 chr5 33645629 33645798 -169439734 - FAM SINE Alu -5 170 3 266 203 62 16 chr5 33645858 33645922 -169439610 - L1MC4 LINE L1 -35 8007 7941 * 407 255 166 6 chr5 33645903 33646060 -169439472 - L1MC4 LINE L1 -306 7736 7555 2536 65 3 0 chr5 33646322 33646628 -169438904 - AluY SINE Alu -3 308 2 2210 83 7 3 chr5 33646735 33647023 -169438509 - AluSg1 SINE Alu -9 300 12 2153 125 14 0 chr5 33647403 33647700 -169437832 - AluSx SINE Alu -11 301 1 308 203 40 0 chr5 33647709 33647783 -169437749 - L1MC4 LINE L1 -1 8041 7965 2974 216 88 23 chr5 33647870 33648607 -169436925 - MER21B LTR ERV1 -60 803 19 277 250 87 0 chr5 33648652 33648744 -169436788 - L1MC4 LINE L1 -124 7918 7819 1279 142 132 43 chr5 33648757 33648955 -169436577 - Charlie1 DNA MER1_type -193 2568 2332 1912 130 56 0 chr5 33648955 33649240 -169436292 - AluSq SINE Alu -11 302 2 1279 142 132 43 chr5 33649240 33649344 -169436188 - Charlie1 DNA MER1_type -429 2332 2239 1135 228 32 4 chr5 33649338 33649588 -169435944 - Charlie1 DNA MER1_type -810 1951 1695 * 969 257 130 25 chr5 33649588 33650027 -169435505 - L1MC4 LINE L1 -213 7829 7345 2664 48 0 3 chr5 33650029 33650340 -169435192 - AluY SINE Alu -1 310 1 1927 159 0 10 chr5 33650352 33650666 -169434866 - AluSx SINE Alu -1 311 1 796 269 93 41 chr5 33650759 33651176 -169434356 + ERVL LTR ERVL 4941 5379 -385 242 285 125 35 chr5 33651602 33651802 -169433730 + LTR33 LTR ERVL 302 519 -2 259 197 239 0 chr5 33653510 33653627 -169431905 - MER5C DNA MER1_type -51 273 129 1682 201 3 7 chr5 33653959 33654257 -169431275 - AluJo SINE Alu -15 297 1 24 32 0 0 chr5 33654260 33654291 -169431241 + AT_rich Low_complexity Low_complexity 1 31 0 1714 104 0 0 chr5 33654595 33654816 -169430716 - AluSx SINE Alu -91 221 1 1886 219 86 39 chr5 33654822 33655066 -169430466 - L1MC4a LINE L1 0 7808 7577 2381 97 0 3 chr5 33655066 33655376 -169430156 - AluSg SINE Alu -1 309 1 243 0 0 0 chr5 33655382 33655409 -169430123 + (TG)n Simple_repeat Simple_repeat 2 28 0 1886 219 86 39 chr5 33655409 33655692 -169429840 - L1MC4a LINE L1 -235 7573 7249 499 291 126 34 chr5 33655692 33656074 -169429458 - L2 LINE L2 -2790 524 108 451 242 198 13 chr5 33656100 33656257 -169429275 + MER5A DNA MER1_type 4 189 0 2207 126 0 0 chr5 33656388 33656689 -169428843 - AluSx SINE Alu -11 301 1 361 296 117 11 chr5 33656763 33656942 -169428590 + LTR67 LTR ERVL 353 550 -7 433 254 196 0 chr5 33657371 33657509 -169428023 - L1ME3A LINE L1 -171 5999 5835 299 230 27 0 chr5 33657552 33657626 -169427906 - L1ME3A LINE L1 -304 5866 5791 960 85 46 8 chr5 33658105 33658235 -169427297 + AluJb SINE Alu 1 135 -177 481 240 16 24 chr5 33659164 33659289 -169426243 - L2 LINE L2 -1 3312 3189 434 172 101 10 chr5 33659289 33659388 -169426144 + MER3 DNA MER1_type 1 108 -101 800 144 7 55 chr5 33659496 33659642 -169425890 - L1ME3A LINE L1 -544 5640 5502 1878 163 21 6 chr5 33660118 33660450 -169425082 - L1MC1 LINE L1 -11 6322 5986 294 347 72 16 chr5 33660459 33660652 -169424880 - L3 LINE CR1 -113 1464 1261 204 238 0 95 chr5 33661601 33661685 -169423847 - L3b LINE CR1 -131 1452 1377 441 265 0 26 chr5 33662220 33662337 -169423195 + MIR SINE MIR 46 159 -103 442 250 0 0 chr5 33663439 33663531 -169422001 - Charlie5 DNA MER1_type -2520 92 1 2742 62 10 77 chr5 33663603 33664007 -169421525 + MER51B LTR ERV1 1 377 0 347 230 103 85 chr5 33664038 33664203 -169421329 - MER102b DNA MER1_type -20 321 154 1690 123 20 0 chr5 33665072 33665316 -169420216 + AluSx SINE Alu 64 312 0 243 88 0 0 chr5 33669029 33669063 -169416469 + (TAA)n Simple_repeat Simple_repeat 2 35 0 288 290 0 11 chr5 33669769 33669862 -169415670 + MER103 DNA DNA 37 128 -38 227 222 81 71 chr5 33669976 33670075 -169415457 - MLT1K LTR MaLR -8 580 481 784 214 45 0 chr5 33670105 33670283 -169415249 - MIR SINE MIR -1 261 76 1510 130 88 77 chr5 33670508 33670793 -169414739 + AluSx SINE Alu 1 288 -24 1853 211 54 44 chr5 33671982 33672166 -169413366 - MLT1D LTR MaLR 0 505 324 816 152 0 0 chr5 33672166 33672291 -169413241 - FLAM_C SINE Alu -6 127 3 1853 211 54 44 chr5 33672291 33672604 -169412928 - MLT1D LTR MaLR -181 324 3 242 314 92 16 chr5 33673015 33673200 -169412332 + L1MC/D LINE L1 5703 5901 -1907 2188 85 0 31 chr5 33673356 33673704 -169411828 - AluSx SINE Alu 0 339 1 2245 113 0 3 chr5 33674134 33674435 -169411097 - AluSg SINE Alu -10 300 1 693 124 0 0 chr5 33675638 33675735 -169409797 + AluJ/FLAM SINE Alu 3 99 -213 188 100 25 0 chr5 33675742 33675782 -169409750 + (TA)n Simple_repeat Simple_repeat 1 41 0 2026 104 4 11 chr5 33675788 33676066 -169409466 - AluSx SINE Alu -36 276 1 1299 140 9 28 chr5 33676414 33676628 -169408904 - AluJo SINE Alu -19 293 84 383 177 0 0 chr5 33676703 33676765 -169408767 - AluJ/FLAM SINE Alu -239 63 2 304 250 39 10 chr5 33676784 33676888 -169408644 - L1MC4a LINE L1 -571 7237 7131 * 325 257 164 7 chr5 33676862 33677014 -169408518 - L1MC4 LINE L1 -953 7089 6914 429 66 0 0 chr5 33677093 33677154 -169408378 + Alu SINE Alu 241 301 -11 2679 55 0 0 chr5 33677158 33677468 -169408064 - AluY SINE Alu -1 310 1 1436 186 81 95 chr5 33677471 33677571 -169407961 - L1MC4 LINE L1 -1135 6907 6807 1196 181 67 0 chr5 33677571 33677809 -169407723 - L1MD1 LINE L1 0 6242 5989 1436 186 81 95 chr5 33677809 33677865 -169407667 - L1MC4 LINE L1 -1235 6807 6752 2020 124 7 0 chr5 33677865 33678202 -169407330 + AluSx SINE Alu 1 339 0 1436 186 81 95 chr5 33678202 33678473 -169407059 - L1MC4 LINE L1 -1290 6752 6484 2026 152 0 0 chr5 33678871 33679181 -169406351 + AluJo SINE Alu 1 310 -2 1658 188 3 3 chr5 33679184 33679466 -169406066 - AluJb SINE Alu -30 282 1 2436 93 0 0 chr5 33679937 33680238 -169405294 - AluSx SINE Alu -9 303 3 2421 56 3 20 chr5 33681159 33681462 -169404070 - AluY SINE Alu -13 298 1 402 21 0 0 chr5 33681519 33681566 -169403966 + (CA)n Simple_repeat Simple_repeat 2 48 0 220 234 47 0 chr5 33681642 33681706 -169403826 + MIR SINE MIR 129 195 -67 1894 142 31 0 chr5 33681903 33682192 -169403340 + AluJb SINE Alu 1 298 -14 202 274 20 0 chr5 33682334 33682385 -169403147 - MIR3 SINE MIR -16 192 141 346 255 194 44 chr5 33682399 33682559 -169402973 - MER20B DNA MER1_type -30 189 2 231 240 125 10 chr5 33682559 33682663 -169402869 - MIR SINE MIR -57 151 36 23 68 0 0 chr5 33683763 33683807 -169401725 + AT_rich Low_complexity Low_complexity 1 44 0 303 286 0 60 chr5 33684037 33684170 -169401362 - MARNA DNA Mariner -41 545 421 23 54 0 0 chr5 33684249 33684286 -169401246 + AT_rich Low_complexity Low_complexity 1 37 0 2619 68 0 0 chr5 33684424 33684735 -169400797 + AluSx SINE Alu 1 311 -1 23 33 0 0 chr5 33685161 33685191 -169400341 + AT_rich Low_complexity Low_complexity 1 30 0 248 277 96 11 chr5 33685257 33685351 -169400181 - MARNA DNA Mariner -141 445 344 296 185 25 49 chr5 33685727 33685808 -169399724 + LTR67 LTR ERVL 459 537 -20 557 219 0 62 chr5 33686018 33686178 -169399354 + MIR SINE MIR 64 213 -49 1082 313 68 8 chr5 33687807 33688272 -169397260 + HERVL LTR ERVL 2648 3156 -2329 357 268 52 20 chr5 33688331 33688484 -169397048 - L1ME4a LINE L1 0 6121 5964 347 87 0 0 chr5 33688544 33688590 -169396942 - L1MB1 LINE L1 -1 6167 6122 2198 113 3 0 chr5 33688593 33688886 -169396646 - AluSx SINE Alu -18 294 1 1597 175 20 34 chr5 33689402 33689699 -169395833 + AluJb SINE Alu 1 293 -19 2530 51 0 3 chr5 33690065 33690360 -169395172 + AluY SINE Alu 1 294 -17 860 230 38 49 chr5 33690374 33690639 -169394893 + MER74B LTR ERVL 356 617 -5 1805 151 3 33 chr5 33690652 33690956 -169394576 - AluJo SINE Alu -4 308 14 1997 122 42 0 chr5 33691606 33691892 -169393640 + AluSx SINE Alu 2 299 -13 242 258 81 0 chr5 33692137 33692199 -169393333 + MIR3 SINE MIR 101 167 -41 1278 134 0 26 chr5 33692297 33692538 -169392994 - AluSp SINE Alu -11 302 1 1814 130 8 8 chr5 33692617 33692879 -169392653 + AluSx SINE Alu 40 301 -11 526 298 63 38 chr5 33693062 33693300 -169392232 + MIR SINE MIR 19 262 0 22 0 0 0 chr5 33693383 33693405 -169392127 + AT_rich Low_complexity Low_complexity 1 22 0 2837 129 41 0 chr5 33693665 33694131 -169391401 + MER31A LTR ERV1 1 485 0 285 356 108 0 chr5 33694761 33694955 -169390577 - LTR16C LTR ERVL -200 291 77 2634 111 8 3 chr5 33695496 33695858 -169389674 - THE1B LTR MaLR 0 364 1 1837 144 58 55 chr5 33696112 33696182 -169389350 - THE1B LTR MaLR 0 364 296 2315 109 0 3 chr5 33696182 33696484 -169389048 + AluSx SINE Alu 1 301 -11 1837 144 58 55 chr5 33696484 33696774 -169388758 - THE1B LTR MaLR -68 296 3 11367 103 13 5 chr5 33696776 33698343 -169387189 - THE1B-int LTR MaLR 0 1580 1 1981 150 42 33 chr5 33698343 33698704 -169386828 - THE1B LTR MaLR 0 364 1 380 159 3 0 chr5 33698869 33698933 -169386599 - FLAM SINE Alu -6 127 71 2376 193 219 101 chr5 33698933 33699024 -169386508 - LTR28 LTR ERV1 0 1020 941 10675 103 17 0 chr5 33699024 33701381 -169384151 - L1PA8 LINE L1 -1 6171 3771 2376 193 219 101 chr5 33701381 33702201 -169383331 - LTR28 LTR ERV1 -79 941 1 39762 152 44 35 chr5 33702204 33704557 -169380975 - LTR28-int LTR ERV1 -3 7088 4758 2145 114 7 3 chr5 33704557 33704855 -169380677 - AluSx SINE Alu -13 299 1 39762 152 44 35 chr5 33704855 33708569 -169376963 - LTR28-int LTR ERV1 -2333 4758 947 212 0 36 0 chr5 33708569 33708597 -169376935 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 39762 152 44 35 chr5 33708597 33709548 -169375984 - LTR28-int LTR ERV1 -6144 947 6 641 191 7 29 chr5 33709551 33709687 -169375845 - LTR28 LTR ERV1 0 1020 888 397 211 135 10 chr5 33709668 33709772 -169375760 + LTR28 LTR ERV1 903 1019 -1 * 544 97 0 0 chr5 33709773 33709845 -169375687 - AluJ/FLAM SINE Alu -238 74 3 2116 112 103 23 chr5 33709873 33709946 -169375586 + MER51B LTR ERV1 2 68 -309 1993 138 10 3 chr5 33709946 33710243 -169375289 + AluSq SINE Alu 1 299 -14 2116 112 103 23 chr5 33710243 33710517 -169375015 + MER51B LTR ERV1 68 377 0 591 274 85 13 chr5 33710712 33711098 -169374434 - ERVL LTR ERVL -838 4926 4439 1296 293 52 3 chr5 33711156 33711542 -169373990 - ERVL LTR ERVL -1468 4296 3892 646 292 185 21 chr5 33711557 33711882 -169373650 - MLT1J LTR MaLR -5 506 129 350 280 87 65 chr5 33711922 33712137 -169373395 - ERVL LTR ERVL -3192 2572 2348 2743 56 18 0 chr5 33712137 33712475 -169373057 - LTR14A LTR ERVK 0 344 1 350 280 87 65 chr5 33712475 33712534 -169372998 - ERVL LTR ERVL -3416 2348 2292 3692 86 317 2 chr5 33712702 33713330 -169372202 - LTR12 LTR ERV1 0 826 1 6996 101 14 7 chr5 33713489 33714664 -169370868 - HERV9 LTR ERV1 0 8399 504 732 148 108 22 chr5 33714662 33714940 -169370592 - HERV9 LTR ERV1 -5755 1141 840 * 441 61 45 0 chr5 33714933 33714999 -169370533 - HERV9 LTR ERV1 -3445 4954 4886 * 12387 105 10 10 chr5 33714995 33717790 -169367742 - HERV9 LTR ERV1 -1949 489 17 3972 108 209 17 chr5 33717790 33718483 -169367049 - LTR12 LTR ERV1 0 826 1 1081 227 30 44 chr5 33718669 33718964 -169366568 - pTR5 LTR ERV1 -1410 1028 738 398 345 38 51 chr5 33718958 33719311 -169366221 - ERVL LTR ERVL -3396 2089 1743 * 689 269 0 6 chr5 33719513 33719669 -169365863 - MER96 DNA MER1_type? -14 161 7 695 254 203 20 chr5 33719871 33720166 -169365366 + LTR16A LTR ERVL 90 438 -12 2223 298 40 44 chr5 33720182 33721107 -169364425 + HERV16 LTR ERVL 5 925 -4071 560 276 77 15 chr5 33721228 33721424 -169364108 + HERV16 LTR ERVL 2322 2529 -2467 341 353 15 7 chr5 33721496 33721632 -169363900 - ERVL LTR ERVL -1908 3856 3720 261 327 9 71 chr5 33721799 33721866 -169363666 - ERVL LTR ERVL -4588 1176 1106 1389 178 58 101 chr5 33721866 33722281 -169363251 - MLT2C1 LTR ERVL 0 397 1 261 327 9 71 chr5 33722281 33722424 -169363108 - ERVL LTR ERVL -4658 1106 979 2116 129 0 0 chr5 33722842 33723122 -169362410 - AluSx SINE Alu -32 280 1 309 170 170 10 chr5 33723467 33723567 -169361965 - LTR67 LTR ERVL -14 543 428 1471 164 13 0 chr5 33723666 33723898 -169361634 + MSTB1 LTR MaLR 198 432 0 7987 201 54 11 chr5 33723898 33725481 -169360051 + MSTB1-int LTR MaLR 1 1651 0 32 0 0 0 chr5 33725688 33725720 -169359812 + AT_rich Low_complexity Low_complexity 1 32 0 3095 67 5 7 chr5 33725724 33726128 -169359404 - L1PA7 LINE L1 0 6154 5752 1847 162 22 48 chr5 33726128 33726486 -169359046 + MSTB1 LTR MaLR 44 392 -40 1441 183 37 26 chr5 33726493 33726766 -169358766 + AluJo SINE Alu 14 289 -23 379 80 0 0 chr5 33726766 33726816 -169358716 + MSTB1 LTR MaLR 383 432 0 246 371 0 0 chr5 33726919 33727035 -169358497 + (TTAGGG)n Simple_repeat Simple_repeat 1 116 0 204 324 15 0 chr5 33727784 33727852 -169357680 + L2 LINE L2 3204 3272 0 241 224 0 17 chr5 33728003 33728061 -169357471 + LTR33A LTR ERVL 444 500 -23 312 306 22 22 chr5 33730345 33730479 -169355053 - MLT1J LTR MaLR -377 134 1 552 219 115 74 chr5 33730794 33731303 -169354229 + MLT1H LTR MaLR 20 549 0 225 348 11 11 chr5 33731520 33731612 -169353920 + MLT1K LTR MaLR 186 277 -311 1881 135 7 7 chr5 33732972 33733261 -169352271 + AluJb SINE Alu 5 293 -19 21 0 0 0 chr5 33734658 33734679 -169350853 + AT_rich Low_complexity Low_complexity 1 21 0 16501 143 19 15 chr5 33734685 33735386 -169350146 - L1MA3 LINE L1 0 7724 7027 2385 84 0 13 chr5 33735386 33735697 -169349835 - AluY SINE Alu -4 307 1 16501 143 19 15 chr5 33735697 33739417 -169346115 - L1MA3 LINE L1 -697 7027 3273 1866 108 0 21 chr5 33739417 33739696 -169345836 - L1PA8 LINE L1 0 6172 5900 16501 143 19 15 chr5 33739696 33740538 -169344994 - L1MA3 LINE L1 -4451 3273 2436 6538 55 0 0 chr5 33740525 33741311 -169344221 - L1PA6 LINE L1 0 6154 5369 * 7484 122 3 4 chr5 33741312 33742383 -169343149 - L1MA3 LINE L1 -5101 2464 1395 6708 26 0 4 chr5 33742390 33743162 -169342370 - L1PA3 LINE L1 -3 6152 5384 * 8939 150 9 21 chr5 33743161 33744500 -169341032 - L1MA3 LINE L1 -6151 1414 91 297 0 0 0 chr5 33744500 33744533 -169340999 + (TG)n Simple_repeat Simple_repeat 2 34 0 8939 150 9 21 chr5 33744533 33744610 -169340922 - L1MA3 LINE L1 -7474 91 15 3380 156 76 19 chr5 33745077 33745469 -169340063 + HSMAR2 DNA Mariner 3 444 -858 3027 109 26 12 chr5 33745469 33745891 -169339641 - MSTA LTR MaLR 0 428 1 3380 156 76 19 chr5 33745891 33746113 -169339419 + HSMAR2 DNA Mariner 444 652 -650 2097 155 70 8 chr5 33746110 33746496 -169339036 + MSTA LTR MaLR 19 428 0 * 3854 134 59 11 chr5 33746499 33747113 -169338419 + HSMAR2 DNA Mariner 657 1299 -3 31 44 0 0 chr5 33747411 33747456 -169338076 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr5 33747547 33747568 -169337964 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr5 33748126 33748146 -169337386 + (A)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr5 33748571 33748600 -169336932 + AT_rich Low_complexity Low_complexity 1 29 0 193 287 115 11 chr5 33748725 33748812 -169336720 + MIR3 SINE MIR 92 187 -21 221 171 0 0 chr5 33749513 33749554 -169335978 + T-rich Low_complexity Low_complexity 1 41 0 357 82 0 0 chr5 33751009 33751058 -169334474 + (TG)n Simple_repeat Simple_repeat 1 49 0 203 133 0 44 chr5 33751311 33751356 -169334176 + (CACCC)n Simple_repeat Simple_repeat 3 45 0 189 107 0 0 chr5 33751678 33751706 -169333826 + (T)n Simple_repeat Simple_repeat 1 28 0 225 159 0 0 chr5 33751968 33752012 -169333520 + (CGG)n Simple_repeat Simple_repeat 1 44 0 400 309 58 5 chr5 33754988 33755176 -169330356 + MIR SINE MIR 59 256 -6 24 53 0 0 chr5 33755725 33755763 -169329769 + AT_rich Low_complexity Low_complexity 1 38 0 597 248 146 36 chr5 33756367 33756641 -169328891 - HAL1 LINE L1 -35 2472 2169 748 129 86 17 chr5 33756642 33756758 -169328774 + FAM SINE Alu 37 160 -25 469 269 48 14 chr5 33756767 33756975 -169328557 - HAL1 LINE L1 -335 2172 1958 12382 65 19 4 chr5 33756980 33758634 -169326898 - L1PA6 LINE L1 -3 6151 4470 189 0 0 0 chr5 33758634 33758655 -169326877 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 12382 65 19 4 chr5 33758655 33759325 -169326207 - L1PA6 LINE L1 -1684 4470 3812 1142 274 71 16 chr5 33759325 33760023 -169325509 - HAL1 LINE L1 -647 1860 1063 22 0 0 0 chr5 33760806 33760828 -169324704 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr5 33761037 33761080 -169324452 + AT_rich Low_complexity Low_complexity 1 43 0 1435 187 73 11 chr5 33761511 33761784 -169323748 + AluSx SINE Alu 1 290 -22 1251 243 91 32 chr5 33761861 33762235 -169323297 - MSTD LTR MaLR 0 396 1 447 220 10 33 chr5 33763814 33763949 -169321583 - L1MC4 LINE L1 0 8040 7880 438 176 0 0 chr5 33763966 33764051 -169321481 + CT-rich Low_complexity Low_complexity 3 87 0 1890 246 72 56 chr5 33764078 33764774 -169320758 - L1MC4 LINE L1 -115 7927 7221 2634 131 45 0 chr5 33765005 33765409 -169320123 + L1PA16 LINE L1 5743 6164 -2 328 246 58 92 chr5 33765668 33765908 -169319624 - MER112 DNA MER1_type -6 254 23 249 282 0 39 chr5 33765886 33765964 -169319568 - MER112 DNA MER1_type -185 75 1 * 536 236 107 96 chr5 33766855 33767259 -169318273 - L1ME4a LINE L1 -22 6099 5579 1798 166 0 10 chr5 33767259 33767555 -169317977 - AluJb SINE Alu -13 299 7 536 236 107 96 chr5 33767555 33767659 -169317873 - L1ME4a LINE L1 -542 5579 5478 343 302 98 34 chr5 33767666 33767901 -169317631 - L1ME4a LINE L1 -1639 4507 4258 265 274 40 40 chr5 33767901 33768025 -169317507 - L1P LINE L1 -1924 4222 4099 248 154 13 90 chr5 33768063 33768141 -169317391 - L1ME4a LINE L1 -2160 3986 3915 402 310 27 46 chr5 33768159 33768311 -169317221 - L1ME4a LINE L1 -2302 3844 3698 2352 100 0 3 chr5 33768311 33768612 -169316920 + AluSq SINE Alu 1 300 -13 402 310 27 46 chr5 33768612 33768720 -169316812 - L1ME4a LINE L1 -2448 3698 3589 1630 178 24 18 chr5 33768809 33768867 -169316665 - L1MD3 LINE L1 -2 7993 7937 1444 161 64 67 chr5 33768867 33768947 -169316585 - MER46B DNA MER2_type -2496 235 156 207 0 0 0 chr5 33768947 33768970 -169316562 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 357 24 0 0 chr5 33768969 33769011 -169316521 + (TA)n Simple_repeat Simple_repeat 1 42 0 1444 161 64 67 chr5 33768970 33769149 -169316383 - MER46B DNA MER2_type -2575 156 141 2792 19 0 0 chr5 33769149 33769460 -169316072 - AluYa5 SINE Alu 0 311 1 1444 161 64 67 chr5 33769460 33769601 -169315931 - MER46B DNA MER2_type -2590 141 1 1630 178 24 18 chr5 33769601 33769618 -169315914 - L1MD3 LINE L1 -58 7937 7922 2021 164 29 26 chr5 33769618 33769965 -169315567 - MER7A DNA MER2_type 0 346 1 1630 178 24 18 chr5 33769965 33770226 -169315306 - L1MD3 LINE L1 -73 7922 7654 2474 228 48 43 chr5 33770240 33771070 -169314462 + L1M4 LINE L1 3787 4620 -1526 719 204 68 37 chr5 33771090 33771281 -169314251 - L1MC4a LINE L1 -314 7494 7298 293 288 117 55 chr5 33771541 33771704 -169313828 + MIR SINE MIR 86 258 -4 566 281 81 94 chr5 33771923 33772074 -169313458 - MLT1J LTR MaLR -58 453 302 2926 13 0 0 chr5 33772074 33772390 -169313142 + AluYb8 SINE Alu 1 316 -2 566 281 81 94 chr5 33772390 33772697 -169312835 - MLT1J LTR MaLR -209 302 1 2230 105 0 0 chr5 33772921 33773256 -169312276 - AluSq SINE Alu 0 335 1 557 304 43 0 chr5 33774018 33774179 -169311353 + MIR SINE MIR 32 199 -63 246 286 14 14 chr5 33774443 33774513 -169311019 - L2 LINE L2 -3 3310 3241 256 335 92 49 chr5 33774670 33774771 -169310761 + L2 LINE L2 1862 1957 -1357 1062 153 89 11 chr5 33774771 33774961 -169310571 + MER3 DNA MER1_type 3 207 -2 256 335 92 49 chr5 33774961 33775369 -169310163 + L2 LINE L2 1957 2393 -921 336 192 55 89 chr5 33775528 33775674 -169309858 - L1ME4a LINE L1 -1 6120 5980 2435 100 0 0 chr5 33776060 33776370 -169309162 + AluSx SINE Alu 1 310 -2 226 146 21 21 chr5 33777019 33777067 -169308465 + MIR SINE MIR 215 262 0 463 284 35 14 chr5 33777889 33778030 -169307502 + MIR SINE MIR 81 224 -38 26 0 0 0 chr5 33778030 33778056 -169307476 + AT_rich Low_complexity Low_complexity 1 26 0 1998 58 17 0 chr5 33778249 33778489 -169307043 - L1PA7 LINE L1 0 6154 5911 1033 167 0 0 chr5 33779998 33780160 -169305372 - AluJb SINE Alu -19 293 132 229 337 43 11 chr5 33780288 33780380 -169305152 + MIR SINE MIR 21 115 -147 1286 146 82 63 chr5 33780629 33780944 -169304588 - MER33 DNA MER1_type 0 324 4 1945 151 3 3 chr5 33781248 33781539 -169303993 + AluJb SINE Alu 1 291 -21 23 33 0 0 chr5 33781763 33781793 -169303739 + AT_rich Low_complexity Low_complexity 1 30 0 665 186 65 0 chr5 33781877 33782001 -169303531 - FLAM_A SINE Alu -1 132 1 779 211 0 0 chr5 33782452 33782575 -169302957 + FLAM_A SINE Alu 1 123 -10 41 82 0 0 chr5 33782588 33782685 -169302847 + AT_rich Low_complexity Low_complexity 1 97 0 304 332 25 40 chr5 33782690 33782889 -169302643 - L1 LINE L1 -2000 4146 3951 1149 178 39 27 chr5 33783302 33783560 -169301972 - L1MD2 LINE L1 -3 6356 6096 337 185 67 74 chr5 33783562 33783697 -169301835 - L1 LINE L1 -2210 3936 3803 2405 99 0 0 chr5 33784101 33784405 -169301127 - AluSc SINE Alu -5 304 1 219 323 121 36 chr5 33784446 33784669 -169300863 + MIR SINE MIR 2 243 -19 444 282 77 89 chr5 33784811 33785059 -169300473 + L2 LINE L2 2993 3237 -35 198 118 0 0 chr5 33785076 33785110 -169300422 + (TTA)n Simple_repeat Simple_repeat 2 35 0 233 314 0 0 chr5 33785122 33785192 -169300340 - MIR3 SINE MIR -47 161 92 840 251 35 92 chr5 33787170 33787689 -169297843 - HAL1 LINE L1 -46 2461 1973 702 263 86 8 chr5 33787856 33787872 -169297660 - HAL1 LINE L1 -821 1686 1673 1823 169 7 0 chr5 33787872 33788167 -169297365 - AluJb SINE Alu -14 298 2 702 263 86 8 chr5 33788167 33788393 -169297139 - HAL1 LINE L1 -834 1673 1425 715 250 51 76 chr5 33788400 33788867 -169296665 - LTR33A LTR ERVL 0 523 1 878 211 87 26 chr5 33788938 33789204 -169296328 - HAL1 LINE L1 -1247 1260 979 507 254 17 28 chr5 33789211 33789388 -169296144 + MER104 DNA Tc2 6 180 0 1444 254 74 105 chr5 33789424 33790269 -169295263 - HAL1 LINE L1 -1539 968 155 1873 111 0 25 chr5 33790269 33790549 -169294983 - AluSx SINE Alu -39 273 1 1444 254 74 105 chr5 33790549 33790654 -169294878 - HAL1 LINE L1 -2352 155 48 2268 110 0 16 chr5 33792033 33792351 -169293181 + AluSq SINE Alu 1 313 0 198 0 0 0 chr5 33793720 33793742 -169291790 + (T)n Simple_repeat Simple_repeat 1 22 0 2436 67 0 0 chr5 33794954 33795251 -169290281 - AluY SINE Alu -14 297 1 241 298 43 11 chr5 33795800 33795894 -169289638 + L2 LINE L2 1992 2088 -1226 30008 45 2 1 chr5 33795897 33800145 -169285387 - L1PA5 LINE L1 -202 5952 1700 2919 219 64 32 chr5 33800123 33801872 -169283660 - L1ME2 LINE L1 -331 5767 636 * 7286 59 3 52 chr5 33801885 33803378 -169282154 - L1PA7 LINE L1 -2 6152 4698 1413 169 48 54 chr5 33803391 33803705 -169281827 - AluSx SINE Alu 0 312 1 512 278 46 45 chr5 33803708 33804004 -169281528 - L1ME2 LINE L1 -4932 769 498 682 287 69 75 chr5 33804147 33804597 -169280935 - L1ME2 LINE L1 -5539 531 83 2427 100 0 0 chr5 33804597 33804908 -169280624 + AluSq SINE Alu 1 311 -2 682 287 69 75 chr5 33804908 33804980 -169280552 - L1ME2 LINE L1 -5987 83 12 705 230 54 29 chr5 33805852 33806056 -169279476 - LTR33 LTR ERVL 0 521 313 401 213 90 25 chr5 33806167 33806289 -169279243 - LTR33 LTR ERVL -389 132 3 186 43 0 0 chr5 33806715 33806738 -169278794 + (TTA)n Simple_repeat Simple_repeat 2 24 0 272 257 92 18 chr5 33807452 33807561 -169277971 + MIR SINE MIR 144 260 -2 304 266 0 0 chr5 33807569 33807633 -169277899 - MER103 DNA DNA -95 71 8 2028 155 7 0 chr5 33810241 33810544 -169274988 + AluJb SINE Alu 1 305 -7 223 281 18 96 chr5 33810793 33810960 -169274572 + L3b LINE CR1 1276 1429 -154 607 286 108 9 chr5 33812297 33812510 -169273022 - MIR SINE MIR 0 262 29 496 281 29 7 chr5 33812824 33812963 -169272569 - MIR SINE MIR -19 243 102 403 316 60 24 chr5 33813880 33814048 -169271484 - MIR SINE MIR -13 249 76 316 182 15 15 chr5 33815060 33815126 -169270406 + MIR SINE MIR 158 223 -39 1957 112 0 8 chr5 33815387 33815655 -169269877 - AluSq SINE Alu -15 298 33 1947 121 0 4 chr5 33815686 33815951 -169269581 - AluSx SINE Alu -10 302 39 684 278 53 60 chr5 33816204 33816671 -169268861 - L1ME4a LINE L1 -166 5955 5492 1333 229 100 35 chr5 33816746 33817356 -169268176 - L2 LINE L2 0 3313 2662 315 232 184 24 chr5 33817408 33817533 -169267999 + MIR3 SINE MIR 47 191 -17 201 284 0 15 chr5 33819863 33819930 -169265602 + (TAA)n Simple_repeat Simple_repeat 2 67 0 629 256 23 17 chr5 33819952 33820128 -169265404 - MIR SINE MIR -50 212 36 233 163 0 0 chr5 33821352 33821395 -169264137 + MIR SINE MIR 111 153 -109 482 66 11 154 chr5 33821634 33821725 -169263807 + MADE1 DNA Mariner 3 80 0 462 245 68 62 chr5 33823815 33824007 -169261525 + MIR SINE MIR 18 210 -52 1753 143 8 0 chr5 33824285 33824543 -169260989 - AluSx SINE Alu -14 298 39 2131 122 10 16 chr5 33825231 33825543 -169259989 - AluSx SINE Alu -2 310 1 2250 109 3 0 chr5 33832822 33833116 -169252416 - AluSx SINE Alu -17 295 1 274 242 220 0 chr5 33833388 33833479 -169252053 + MIR SINE MIR 126 236 -26 250 329 14 36 chr5 33834675 33834815 -169250717 - MIR SINE MIR -7 255 119 31727 114 21 75 chr5 33834819 33839692 -169245840 + L1PA8A LINE L1 9 4430 -1701 360 0 0 0 chr5 33839692 33839732 -169245800 + (CA)n Simple_repeat Simple_repeat 1 40 0 31727 114 21 75 chr5 33839732 33841342 -169244190 + L1PA8A LINE L1 4430 6126 -5 334 191 15 15 chr5 33841371 33841439 -169244093 - MER116 DNA Mariner -12 68 1 2368 118 3 3 chr5 33841796 33842128 -169243404 - THE1B LTR MaLR -32 332 1 506 195 0 0 chr5 33842408 33842495 -169243037 - MIR SINE MIR -130 132 46 184 346 82 33 chr5 33842597 33842756 -169242776 + L2 LINE L2 2555 2732 -582 3225 161 78 19 chr5 33842756 33843334 -169242198 + LTR9 LTR ERV1 1 612 0 184 346 82 33 chr5 33843334 33843417 -169242115 + L2 LINE L2 2732 2809 -505 330 301 35 0 chr5 33844177 33844290 -169241242 + MIR SINE MIR 57 173 -89 640 149 0 0 chr5 33844488 33844582 -169240950 - LTR12 LTR ERV1 -133 581 488 345 221 71 71 chr5 33844582 33844709 -169240823 - LTR30 LTR ERV1 -67 655 553 791 117 0 209 chr5 33844796 33845026 -169240506 - LTR12 LTR ERV1 -480 234 53 265 231 0 0 chr5 33845026 33845078 -169240454 - LTR30 LTR ERV1 -670 52 1 536 222 142 12 chr5 33845203 33845365 -169240167 - MIR SINE MIR -70 192 10 1669 156 10 50 chr5 33845673 33845974 -169239558 - AluJb SINE Alu -23 289 1 1910 196 20 58 chr5 33846989 33847165 -169238367 - MER63B DNA MER1_type -631 431 250 6745 92 21 21 chr5 33847165 33848352 -169237180 - L1PA13 LINE L1 0 6163 4977 1910 196 20 58 chr5 33848352 33848623 -169236909 - MER63B DNA MER1_type -812 250 1 2159 111 7 7 chr5 33849590 33849888 -169235644 - AluSx SINE Alu -14 298 1 2458 87 0 0 chr5 33850221 33850520 -169235012 + AluSc SINE Alu 1 299 -10 823 255 17 62 chr5 33852110 33852400 -169233132 - L1MEd LINE L1 -5837 282 6 4390 158 8 12 chr5 33853309 33854030 -169231502 - L1MB2 LINE L1 -8 6163 5446 2732 84 14 0 chr5 33855045 33855390 -169230142 + THE1A LTR MaLR 3 352 -3 8858 88 9 2 chr5 33855393 33856560 -169228972 + THE1A-int LTR MaLR 1 1175 -405 180 0 0 0 chr5 33856864 33856884 -169228648 + (A)n Simple_repeat Simple_repeat 1 20 0 236 363 70 6 chr5 33856887 33857044 -169228488 - L2 LINE L2 -508 2806 2640 436 325 0 12 chr5 33857049 33857209 -169228323 - L2 LINE L2 -912 2402 2245 210 37 0 0 chr5 33857224 33857251 -169228281 + (GA)n Simple_repeat Simple_repeat 1 27 0 202 274 16 32 chr5 33857427 33857489 -169228043 + L3 LINE CR1 1515 1575 -2 1949 123 29 16 chr5 33857849 33858157 -169227375 - AluSx SINE Alu 0 312 1 1725 160 77 3 chr5 33858441 33858753 -169226779 + MER47A DNA MER2_type 1 335 -31 27 29 0 0 chr5 33859210 33859244 -169226288 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr5 33860000 33860030 -169225502 + AT_rich Low_complexity Low_complexity 1 30 0 384 294 0 0 chr5 33860325 33860434 -169225098 - MIR3 SINE MIR -12 196 88 2075 261 63 15 chr5 33860537 33861078 -169224454 - MLT1E LTR MaLR 0 593 27 394 311 60 38 chr5 33861156 33861339 -169224193 + L3 LINE CR1 569 755 -822 2126 203 73 13 chr5 33862112 33862590 -169222942 + MER92B LTR ERV1 5 511 -125 210 136 0 0 chr5 33862590 33862634 -169222898 + (T)n Simple_repeat Simple_repeat 1 44 0 11663 16 0 0 chr5 33862634 33864729 -169220803 - L1HS LINE L1 0 6155 4061 * 27608 36 38 2 chr5 33864721 33868099 -169217433 + L1HS LINE L1 576 4074 -2072 521 192 8 7 chr5 33868099 33868252 -169217280 + MER92B LTR ERV1 506 636 0 288 53 0 0 chr5 33868594 33868632 -169216900 + (TG)n Simple_repeat Simple_repeat 2 39 0 415 244 76 0 chr5 33868751 33868870 -169216662 + L3 LINE CR1 771 898 -679 371 200 0 24 chr5 33868899 33868984 -169216548 - MLT1K LTR MaLR 0 588 506 285 263 43 120 chr5 33869578 33869787 -169215745 + L3 LINE CR1 1062 1254 -323 1237 106 28 0 chr5 33869856 33870035 -169215497 - THE1C LTR MaLR -191 184 1 526 226 65 96 chr5 33870720 33870981 -169214551 - MER112 DNA MER1_type -7 253 1 183 80 0 0 chr5 33871837 33871862 -169213670 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 256 229 24 48 chr5 33872982 33873065 -169212467 + GA-rich Low_complexity Low_complexity 4 84 0 187 256 0 0 chr5 33873434 33873477 -169212055 + L2 LINE L2 3267 3309 -4 761 203 184 0 chr5 33875390 33875548 -169209984 + MER5A DNA MER1_type 1 187 -2 2479 51 3 10 chr5 33875720 33876031 -169209501 - AluY SINE Alu -1 310 2 240 243 0 0 chr5 33876076 33876150 -169209382 + CT-rich Low_complexity Low_complexity 4 77 0 611 258 74 93 chr5 33876167 33876585 -169208947 + MLT1K LTR MaLR 71 480 -108 399 269 131 3 chr5 33877947 33878104 -169207428 - MIR SINE MIR -56 206 34 225 295 137 0 chr5 33879095 33879190 -169206342 - MIR SINE MIR -49 213 106 982 131 91 11 chr5 33879458 33879633 -169205899 - MER53 DNA DNA 0 189 1 508 239 191 21 chr5 33879741 33879929 -169205603 + MIR SINE MIR 33 252 -10 222 239 0 15 chr5 33879995 33880062 -169205470 + (TA)n Simple_repeat Simple_repeat 2 67 0 180 219 0 0 chr5 33880669 33880710 -169204822 + CT-rich Low_complexity Low_complexity 5 45 0 776 160 0 16 chr5 33880842 33880967 -169204565 + FLAM_A SINE Alu 1 123 -10 2235 99 3 3 chr5 33880977 33881269 -169204263 + AluSq SINE Alu 1 292 -21 2238 79 14 0 chr5 33881334 33881625 -169203907 - AluY SINE Alu -16 295 1 826 272 105 8 chr5 33882003 33882242 -169203290 + MER45C DNA AcHobo 1 262 -691 554 271 93 73 chr5 33882318 33882441 -169203091 + MER45C DNA AcHobo 693 812 -769 1845 151 10 3 chr5 33882441 33882733 -169202799 + AluJo SINE Alu 1 294 -18 554 271 93 73 chr5 33882733 33882856 -169202676 + MER45C DNA AcHobo 812 944 -9 327 270 88 57 chr5 33886207 33886366 -169199166 + L2 LINE L2 2924 3087 -185 1210 305 35 13 chr5 33886460 33886857 -169198675 + LTR16A LTR ERVL 29 434 -16 344 270 36 80 chr5 33886868 33887005 -169198527 + L2 LINE L2 3140 3270 -2 564 225 16 8 chr5 33887191 33887320 -169198212 - LTR33 LTR ERVL -11 510 381 641 155 8 0 chr5 33888491 33888620 -169196912 + CT-rich Low_complexity Low_complexity 3 132 0 626 278 94 28 chr5 33888634 33888889 -169196643 - L2 LINE L2 0 3313 3042 802 269 115 45 chr5 33889126 33889906 -169195626 + L2 LINE L2 2458 3301 -12 211 194 0 0 chr5 33889943 33889979 -169195553 + (CA)n Simple_repeat Simple_repeat 2 37 0 1496 192 2 86 chr5 33890057 33890453 -169195079 + MLT1A2 LTR MaLR 1 363 -11 322 167 36 12 chr5 33891087 33891171 -169194361 - L1MA4A LINE L1 -27 6276 6191 274 327 78 13 chr5 33891209 33891362 -169194170 + MIR SINE MIR 78 240 -22 389 242 223 40 chr5 33892960 33893204 -169192328 + Charlie8 DNA MER1_type 1 279 -2138 463 170 94 9 chr5 33893370 33893476 -169192056 + MIR SINE MIR 124 238 -24 218 289 52 41 chr5 33893626 33893723 -169191809 - L2 LINE L2 -1 3271 3174 409 191 83 0 chr5 33893917 33894001 -169191531 + MER63 DNA MER1_type 661 751 -310 281 247 71 0 chr5 33894114 33894199 -169191333 - MIR SINE MIR -109 153 63 1482 262 82 28 chr5 33894277 33894847 -169190685 + HAL1 LINE L1 1658 2267 -240 243 0 0 0 chr5 33894847 33894874 -169190658 + (TG)n Simple_repeat Simple_repeat 1 27 0 1482 262 82 28 chr5 33894874 33894936 -169190596 + HAL1 LINE L1 2267 2324 -183 236 261 70 14 chr5 33894937 33895079 -169190453 + L1MC/D LINE L1 5136 5285 -861 * 826 198 0 21 chr5 33895066 33895258 -169190274 + L1 LINE L1 4507 4694 -1452 352 291 108 15 chr5 33895372 33895576 -169189956 + L1MC/D LINE L1 5263 5484 -2301 1950 167 16 29 chr5 33895601 33895979 -169189553 - L1MB2 LINE L1 -14 6157 5785 562 102 18 73 chr5 33895983 33896333 -169189199 + (TATAA)n Simple_repeat Simple_repeat 1 330 0 3817 110 5 90 chr5 33898841 33899761 -169185771 - L1P LINE L1 -3242 2904 2063 4767 224 50 16 chr5 33900006 33901359 -169184173 - L1 LINE L1 -1895 4251 2853 266 176 40 0 chr5 33901607 33901681 -169183851 + L1P LINE L1 4618 4694 -1452 391 297 61 38 chr5 33901789 33902001 -169183531 + L1MC/D LINE L1 5265 5481 -2327 1789 167 16 29 chr5 33902026 33902404 -169183128 - L1MB2 LINE L1 -14 6157 5785 457 152 47 0 chr5 33902440 33902611 -169182921 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 464 152 42 0 chr5 33902624 33902789 -169182743 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 419 236 17 22 chr5 33902836 33903014 -169182518 + (CATATA)n Simple_repeat Simple_repeat 2 178 0 5931 199 19 14 chr5 33903016 33904854 -169180678 - L1MB2 LINE L1 -378 5793 3952 337 328 37 21 chr5 33904904 33905093 -169180439 + L1MC/D LINE L1 5560 5751 -2057 11802 197 39 9 chr5 33905126 33906829 -169178703 - L1PA16 LINE L1 -9 6157 4508 240 35 0 0 chr5 33906829 33906858 -169178674 + (TG)n Simple_repeat Simple_repeat 2 30 0 11802 197 39 9 chr5 33906858 33908910 -169176622 - L1PA16 LINE L1 -1658 4508 2291 442 265 141 18 chr5 33909107 33909277 -169176255 - MIR SINE MIR -70 192 2 2206 114 7 0 chr5 33909386 33909685 -169175847 + AluSx SINE Alu 1 301 -11 776 194 92 20 chr5 33909890 33910086 -169175446 - MER6B DNA MER2_type 0 210 1 221 178 0 22 chr5 33910913 33910958 -169174574 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 362 247 12 0 chr5 33910988 33911069 -169174463 - L2 LINE L2 -37 3235 3154 442 248 26 9 chr5 33912636 33912749 -169172783 + MIR3 SINE MIR 82 196 -12 984 239 0 0 chr5 33913088 33913276 -169172256 - MER5A DNA MER1_type -1 188 1 445 259 161 0 chr5 33913575 33913687 -169171845 - MER45A DNA AcHobo -45 133 4 26 30 0 0 chr5 33913922 33913955 -169171577 + AT_rich Low_complexity Low_complexity 1 33 0 279 390 21 0 chr5 33913965 33914060 -169171472 + L2 LINE L2 3154 3250 -22 217 294 39 0 chr5 33914295 33914346 -169171186 + MIR SINE MIR 20 72 -190 352 333 22 7 chr5 33914757 33914895 -169170637 - Charlie8 DNA MER1_type -2277 140 1 975 224 25 57 chr5 33915155 33915436 -169170096 - MLT1A2 LTR MaLR -102 272 1 705 326 89 59 chr5 33915794 33916707 -169168825 - L2 LINE L2 -495 2819 1880 241 276 8 73 chr5 33918624 33918747 -169166785 - MIR SINE MIR -16 246 132 293 237 26 13 chr5 33918767 33918843 -169166689 + MIR3 SINE MIR 115 191 -17 2218 140 5 60 chr5 33919033 33919272 -169166260 - MLT1B LTR MaLR 0 390 182 2258 129 27 16 chr5 33919272 33919643 -169165889 + THE1C LTR MaLR 1 375 0 2218 140 5 60 chr5 33919643 33919816 -169165716 - MLT1B LTR MaLR -208 182 1 429 302 7 4 chr5 33919849 33920006 -169165526 - MIR3 SINE MIR -64 144 4 24 53 0 0 chr5 33920929 33920967 -169164565 + AT_rich Low_complexity Low_complexity 1 38 0 239 247 39 0 chr5 33922270 33922347 -169163185 - L1M4 LINE L1 -876 5270 5191 1744 109 37 56 chr5 33922362 33922486 -169163046 - L1MA5A LINE L1 -3 6936 6811 1738 108 119 4 chr5 33922486 33922746 -169162786 - AluSq SINE Alu -23 290 1 1744 109 37 56 chr5 33922746 33922942 -169162590 - L1MA5A LINE L1 -128 6811 6622 1668 131 4 69 chr5 33922944 33923364 -169162168 + MER1B DNA MER1_type 1 339 0 4243 139 19 16 chr5 33923364 33924734 -169160798 - L1MA5A LINE L1 -312 6627 5249 422 49 16 0 chr5 33924736 33924797 -169160735 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 7051 58 0 0 chr5 33924919 33926393 -169159139 + L1PA6 LINE L1 4685 6161 0 1322 201 63 26 chr5 33926414 33926683 -169158849 - AluJo SINE Alu -30 282 4 11417 183 23 17 chr5 33926685 33929110 -169156422 - L1MA5A LINE L1 -1532 5256 2818 765 187 0 29 chr5 33929127 33929266 -169156266 - FLAM_C SINE Alu -8 135 1 2158 188 39 0 chr5 33929271 33929713 -169155819 - L1MA5A LINE L1 -3962 2827 2369 6041 153 21 14 chr5 33929887 33930968 -169154564 - L1MA5A LINE L1 -4455 2334 1246 797 196 77 0 chr5 33930971 33931165 -169154367 - L1M4 LINE L1 -960 5186 4978 1444 236 40 9 chr5 33931166 33931514 -169154018 - MLT1A2 LTR MaLR -4 370 12 2681 216 14 14 chr5 33931525 33932132 -169153400 - L1M4 LINE L1 -1161 4985 4376 2360 86 0 29 chr5 33932132 33932447 -169153085 - AluY SINE Alu -5 306 1 2681 216 14 14 chr5 33932447 33932495 -169153037 - L1M4 LINE L1 -1769 4377 4330 21 71 0 0 chr5 33932552 33932594 -169152938 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr5 33932681 33932703 -169152829 + AT_rich Low_complexity Low_complexity 1 22 0 380 311 71 39 chr5 33933032 33933244 -169152288 + MIR SINE MIR 18 247 -15 328 255 0 41 chr5 33934998 33935096 -169150436 - MLT1I LTR MaLR -6 403 310 279 200 0 0 chr5 33935092 33935137 -169150395 - MLT1J1 LTR MaLR -136 310 266 * 355 283 42 25 chr5 33935225 33935345 -169150187 - MLT1J2 LTR MaLR -306 144 23 1021 290 127 20 chr5 33935418 33935934 -169149598 + L2 LINE L2 2739 3313 0 2029 233 76 14 chr5 33936218 33936716 -169148816 + MLT1F LTR MaLR 1 529 -13 318 241 0 38 chr5 33936830 33936909 -169148623 - 7SK RNA RNA -116 77 2 190 359 0 43 chr5 33937767 33937859 -169147673 - L3b LINE CR1 -141 1442 1355 31926 110 11 59 chr5 33939382 33945855 -169139677 - L1PA7 LINE L1 -4 6150 2 21 0 0 0 chr5 33946152 33946173 -169139359 + AT_rich Low_complexity Low_complexity 1 21 0 2187 148 13 24 chr5 33946356 33946735 -169138797 - THE1C LTR MaLR 0 375 1 4455 159 126 33 chr5 33946740 33948124 -169137408 - THE1C-int LTR MaLR -5 1646 2 2222 119 16 49 chr5 33948125 33948511 -169137021 - THE1C LTR MaLR 0 375 3 387 304 106 55 chr5 33948691 33948859 -169136673 - LTR16C LTR ERVL -61 430 239 1047 230 5 0 chr5 33948859 33949081 -169136451 + MER58A DNA MER1_type 2 224 0 387 304 106 55 chr5 33949081 33949205 -169136327 - LTR16C LTR ERVL -252 239 123 612 266 192 6 chr5 33949404 33949793 -169135739 - L2 LINE L2 -2 3311 2705 240 237 18 53 chr5 33949795 33949808 -169135724 - L1MA10 LINE L1 0 6334 6322 2181 249 58 50 chr5 33949808 33951335 -169134197 - L1ME3 LINE L1 -1 6230 4700 435 259 89 19 chr5 33951562 33951879 -169133653 - L1ME3 LINE L1 -4551 1664 1441 314 338 89 67 chr5 33951921 33952447 -169133085 - L1ME3 LINE L1 -5551 845 308 390 288 12 35 chr5 33952495 33952665 -169132867 - L1ME3 LINE L1 -6194 202 37 2017 291 18 3 chr5 33952681 33953247 -169132285 - L2 LINE L2 -612 2702 2129 7123 55 5 70 chr5 33953655 33954808 -169130724 - L1PA6 LINE L1 -1 6153 5027 444 209 8 47 chr5 33955529 33955658 -169129874 + L1MC4 LINE L1 7797 7920 -122 263 250 15 0 chr5 33955661 33955729 -169129803 + GA-rich Low_complexity Low_complexity 2 70 0 180 200 0 0 chr5 33955837 33955877 -169129655 + (CA)n Simple_repeat Simple_repeat 1 40 0 352 265 11 119 chr5 33956603 33956788 -169128744 - MER5A DNA MER1_type -7 182 18 185 333 20 88 chr5 33956785 33956932 -169128600 - L2 LINE L2 -2 3270 3134 * 509 279 181 24 chr5 33957004 33957258 -169128274 - L2 LINE L2 -7 3306 3013 259 284 0 49 chr5 33957381 33957462 -169128070 + L2 LINE L2 3237 3313 0 2342 27 0 0 chr5 33957817 33958111 -169127421 - L1PA2 LINE L1 -995 5151 4858 * 4817 12 1 0 chr5 33958105 33958809 -169126723 + L1PA2 LINE L1 5125 5829 -326 2857 12 0 0 chr5 33958925 33959274 -169126258 + L1PA2 LINE L1 5833 6181 0 2619 191 17 65 chr5 33959412 33960055 -169125477 + LTR9 LTR ERV1 1 612 0 996 214 38 47 chr5 33960075 33960392 -169125140 + LTR9 LTR ERV1 299 612 0 3942 143 18 10 chr5 33961333 33962038 -169123494 + MER50 LTR ERV1 1 711 -23 1624 35 19 47 chr5 33962627 33962883 -169122649 + L1PA2 LINE L1 5907 6155 0 204 67 0 0 chr5 33962897 33962927 -169122605 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 30 0 0 0 chr5 33963237 33963267 -169122265 + AT_rich Low_complexity Low_complexity 1 30 0 440 217 217 15 chr5 33963305 33963508 -169122024 - L1ME2 LINE L1 -9 6155 5912 224 277 26 77 chr5 33963753 33963883 -169121649 + MIR SINE MIR 26 144 -64 364 200 13 0 chr5 33964263 33964338 -169121194 - MER69 DNA AcHobo 0 2526 2451 * 588 229 36 7 chr5 33964336 33964476 -169121056 - MER69 DNA AcHobo -1079 147 4 1262 146 4 34 chr5 33966066 33966299 -169119233 - AluJb SINE Alu -2 310 85 3228 56 5 12 chr5 33966587 33967014 -169118518 - L1PA4 LINE L1 0 6155 5732 23 33 0 0 chr5 33967176 33967206 -169118326 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr5 33967232 33967256 -169118276 + AT_rich Low_complexity Low_complexity 1 24 0 1625 153 57 45 chr5 33967291 33967624 -169117908 - MER44D DNA MER2_type -2 607 1 213 312 128 37 chr5 33967910 33968019 -169117513 + L2 LINE L2 3153 3271 -1 375 321 170 0 chr5 33968613 33968772 -169116760 + L3 LINE CR1 334 519 -1058 337 287 35 21 chr5 33968812 33968955 -169116577 - L1ME3A LINE L1 -15 6155 6011 926 295 46 34 chr5 33969049 33969523 -169116009 - L1ME3A LINE L1 -208 5962 5483 234 352 21 4 chr5 33969731 33969852 -169115680 - MIR SINE MIR -67 141 32 234 313 38 0 chr5 33970176 33970256 -169115276 + MIR SINE MIR 64 146 -62 6218 87 11 2 chr5 33971725 33973025 -169112507 - L1PA12 LINE L1 -1 6167 4855 1011 179 10 0 chr5 33973028 33973235 -169112297 + L1PA12 LINE L1 4644 4852 -1294 21 0 0 0 chr5 33974019 33974040 -169111492 + AT_rich Low_complexity Low_complexity 1 21 0 2069 238 86 29 chr5 33974184 33974293 -169111239 - L1MB8 LINE L1 -12 6166 6065 2138 136 0 7 chr5 33974293 33974595 -169110937 - AluSx SINE Alu -12 300 1 2069 238 86 29 chr5 33974595 33975926 -169109606 - L1MB8 LINE L1 -113 6065 4632 688 71 0 0 chr5 33975926 33976025 -169109507 - L1PB1 LINE L1 0 6151 6053 2069 238 86 29 chr5 33976025 33976165 -169109367 - L1MB8 LINE L1 -1546 4632 4501 * 2895 33 0 0 chr5 33976163 33976526 -169109006 + L1P LINE L1 3547 3909 -2237 814 169 0 0 chr5 33976606 33976730 -169108802 - AluSq/x SINE Alu -189 124 1 928 224 72 63 chr5 33976731 33977204 -169108328 - L1MB8 LINE L1 -1661 4485 4009 345 282 68 26 chr5 33977204 33977321 -169108211 - L1MCa LINE L1 -4050 2376 2255 512 281 25 51 chr5 33977548 33977901 -169107631 + L1M4 LINE L1 4890 5233 -913 2458 170 29 0 chr5 33978046 33978529 -169107003 - L1MB7 LINE L1 -27 6157 5661 393 159 0 0 chr5 33978539 33978608 -169106924 - L1MA9 LINE L1 -5 6307 6239 2043 123 68 0 chr5 33978634 33978926 -169106606 - AluSx SINE Alu 0 312 1 536 341 44 6 chr5 33979598 33979780 -169105752 + MIR3 SINE MIR 8 196 -12 272 340 0 10 chr5 33979940 33980037 -169105495 + MIR3 SINE MIR 104 199 -9 1838 129 0 58 chr5 33980065 33980215 -169105317 + AluJo SINE Alu 1 125 -187 2249 110 0 7 chr5 33980215 33980515 -169105017 + AluSq SINE Alu 3 300 -13 1838 129 0 58 chr5 33980515 33980673 -169104859 + AluJo SINE Alu 125 291 -21 247 278 28 65 chr5 33981309 33981417 -169104115 + MIR SINE MIR 148 251 -11 2196 91 0 17 chr5 33982811 33983098 -169102434 + AluY SINE Alu 1 282 -29 3721 42 0 19 chr5 33983099 33983571 -169101961 + L1PA5 LINE L1 5691 6153 -1 251 337 93 54 chr5 33983673 33983878 -169101654 + L2 LINE L2 3017 3229 -43 805 257 22 6 chr5 33984013 33984196 -169101336 - MIR SINE MIR -61 201 16 417 237 38 15 chr5 33984488 33984619 -169100913 + MER94 DNA DNA 1 134 0 342 280 30 15 chr5 33984755 33984887 -169100645 + MARNA DNA Mariner 85 218 -368 214 286 86 0 chr5 33984896 33984966 -169100566 + L2 LINE L2 3188 3263 -9 24 0 0 0 chr5 33985203 33985227 -169100305 + AT_rich Low_complexity Low_complexity 1 24 0 446 294 25 6 chr5 33985273 33985436 -169100096 + MARNA DNA Mariner 408 573 -13 573 254 8 8 chr5 33987216 33987350 -169098182 + MIR SINE MIR 62 195 -67 374 306 30 17 chr5 33987748 33988045 -169097487 - L1M4 LINE L1 -3324 2822 2522 5153 75 11 2 chr5 33988046 33989387 -169096145 + L1PA4 LINE L1 4796 6173 -11 272 158 18 0 chr5 33989387 33989444 -169096088 + GA-rich Low_complexity Low_complexity 5 62 0 822 153 6 12 chr5 33989455 33989625 -169095907 + GA-rich Low_complexity Low_complexity 2 170 0 661 267 148 18 chr5 33989815 33990092 -169095440 - L2 LINE L2 -2 3311 2999 638 279 98 80 chr5 33990534 33991047 -169094485 - LTR33A LTR ERVL 0 523 2 314 335 30 55 chr5 33991090 33991290 -169094242 - MIR SINE MIR -19 243 49 205 182 0 0 chr5 33991330 33991374 -169094158 + (TA)n Simple_repeat Simple_repeat 1 44 0 890 189 0 30 chr5 33991408 33991572 -169093960 - AluJb SINE Alu -18 294 136 1598 165 3 49 chr5 33991576 33991903 -169093629 - AluJb SINE Alu 0 312 1 2380 89 0 3 chr5 33992592 33992894 -169092638 - AluSg SINE Alu -9 301 1 26 30 0 0 chr5 33992920 33992953 -169092579 + AT_rich Low_complexity Low_complexity 1 33 0 2627 58 0 0 chr5 33992953 33993282 -169092250 - L1PA4 LINE L1 -3 6152 5824 1843 187 56 58 chr5 33993704 33994206 -169091326 + MLT1D LTR MaLR 5 505 0 2379 82 0 16 chr5 33994268 33994584 -169090948 + AluY SINE Alu 1 311 0 624 284 100 38 chr5 33994594 33994914 -169090618 - MLT1J2 LTR MaLR -1 449 110 653 220 41 86 chr5 33994964 33995255 -169090277 + MLT1D LTR MaLR 5 282 -223 464 216 32 16 chr5 33995254 33995379 -169090153 - MLT1J2 LTR MaLR -323 127 1 * 236 291 0 0 chr5 33995523 33995612 -169089920 + MIR SINE MIR 79 166 -74 282 208 39 0 chr5 33995787 33995864 -169089668 - MER116 DNA Mariner 0 80 1 515 240 71 39 chr5 33996003 33996157 -169089375 + L2 LINE L2 3154 3312 -1 363 330 98 15 chr5 33996488 33996691 -169088841 - L3b LINE CR1 -80 1503 1284 21 0 0 0 chr5 33997144 33997165 -169088367 + AT_rich Low_complexity Low_complexity 1 21 0 1115 60 13 0 chr5 33998755 33998905 -169086627 + MER4E LTR ERV1 1 152 -627 2749 158 91 24 chr5 33998905 33999479 -169086053 - LTR9 LTR ERV1 0 612 1 * 3456 137 39 30 chr5 33999479 34000100 -169085432 + MER4E LTR ERV1 153 779 0 1618 139 35 4 chr5 34001268 34001526 -169084006 - Tigger4(Zombi) DNA MER2_type 0 2731 2466 209 336 104 32 chr5 34001835 34002055 -169083477 - L3b LINE CR1 -226 1357 1122 689 267 208 24 chr5 34002420 34002839 -169082693 - L2 LINE L2 -1625 1689 1194 5949 80 20 44 chr5 34003347 34003851 -169081681 - L1PA12 LINE L1 -1 6167 5693 2194 115 0 0 chr5 34003851 34004139 -169081393 - AluSx SINE Alu -23 289 2 5949 80 20 44 chr5 34004139 34004538 -169080994 - L1PA12 LINE L1 -475 5693 5286 194 315 82 0 chr5 34005183 34005256 -169080276 + L2 LINE L2 2768 2846 -468 24 67 0 0 chr5 34005450 34005495 -169080037 + AT_rich Low_complexity Low_complexity 1 45 0 1923 158 39 34 chr5 34005991 34006376 -169079156 - MLT1B LTR MaLR -2 388 2 1439 234 31 45 chr5 34009165 34009583 -169075949 + MER92A LTR ERV1 1 412 0 1039 281 82 0 chr5 34009583 34009935 -169075597 + L1ME3A LINE L1 5787 6167 -3 188 0 74 0 chr5 34010101 34010128 -169075404 + (TTTAA)n Simple_repeat Simple_repeat 5 33 0 2392 164 29 5 chr5 34010213 34010629 -169074903 - MSTB LTR MaLR 0 426 1 193 341 91 17 chr5 34011268 34011444 -169074088 - L2 LINE L2 -605 2709 2521 183 301 75 60 chr5 34011679 34011812 -169073720 + L2 LINE L2 3171 3305 -8 1704 244 80 75 chr5 34011854 34012772 -169072760 - L1MEc LINE L1 -2921 3294 2414 2739 187 52 9 chr5 34012772 34013312 -169072220 - MLT1F1 LTR MaLR -4 563 1 1704 244 80 75 chr5 34013312 34013560 -169071972 - L1MEc LINE L1 -3801 2414 2169 21 0 0 0 chr5 34013881 34013902 -169071630 + AT_rich Low_complexity Low_complexity 1 21 0 358 315 101 11 chr5 34013964 34014142 -169071390 - MIR SINE MIR -62 200 7 469 53 0 149 chr5 34014936 34014975 -169070557 + MADE1 DNA Mariner 1 20 -60 2375 90 3 0 chr5 34014975 34015276 -169070256 - AluSx SINE Alu -10 302 1 469 53 0 149 chr5 34015276 34015330 -169070202 + MADE1 DNA Mariner 20 80 0 1933 161 33 19 chr5 34016944 34017304 -169068228 - MLT1A1 LTR MaLR 0 365 1 460 247 19 56 chr5 34017581 34017743 -169067789 + MLT1D LTR MaLR 1 156 -349 373 167 28 0 chr5 34017742 34017814 -169067718 - MLT1F1 LTR MaLR -470 97 24 * 323 170 0 0 chr5 34017832 34017885 -169067647 - MLT1F1 LTR MaLR -52 415 363 608 160 20 0 chr5 34017889 34017989 -169067543 - MLT1F1 LTR MaLR -377 190 89 209 83 28 0 chr5 34018331 34018367 -169067165 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 2717 131 9 14 chr5 34018571 34019000 -169066532 - L1M1 LINE L1 -508 5797 5371 198 340 189 0 chr5 34020044 34020150 -169065382 + L2 LINE L2 3141 3266 -6 301 260 158 63 chr5 34021034 34021161 -169064371 + MIR SINE MIR 47 185 -77 1036 212 81 41 chr5 34021314 34021757 -169063775 - L1M4 LINE L1 -1548 4598 4138 1191 243 71 58 chr5 34021870 34022459 -169063073 - L1M4 LINE L1 -2446 3700 3104 900 184 7 0 chr5 34022908 34023055 -169062477 - FRAM SINE Alu -23 153 6 1426 198 0 11 chr5 34023061 34023324 -169062208 - AluJo SINE Alu -13 299 40 207 0 0 0 chr5 34023325 34023348 -169062184 + (A)n Simple_repeat Simple_repeat 1 23 0 762 167 0 8 chr5 34023369 34023501 -169062031 - FLAM_C SINE Alu -2 131 1 217 163 0 20 chr5 34023509 34023558 -169061974 + T-rich Low_complexity Low_complexity 1 48 0 453 327 123 14 chr5 34024466 34024686 -169060846 + L1MEc LINE L1 234 477 -5919 1141 241 45 58 chr5 34024697 34024990 -169060542 + L1MEc LINE L1 528 814 -5582 2080 132 0 0 chr5 34024990 34025279 -169060253 + AluSx SINE Alu 9 297 -15 1141 241 45 58 chr5 34025279 34025434 -169060098 + L1MEc LINE L1 814 970 -5426 485 278 91 62 chr5 34025490 34026008 -169059524 + L1MEc LINE L1 1103 1635 -4761 936 244 121 20 chr5 34026036 34026426 -169059106 + L1MEc LINE L1 1735 2163 -4233 679 239 63 9 chr5 34026425 34026647 -169058885 + L1MEc LINE L1 2832 3065 -3150 * 360 155 206 21 chr5 34026978 34027075 -169058457 - MIR SINE MIR -58 204 90 3650 142 43 64 chr5 34027516 34028299 -169057233 - L1MC2 LINE L1 0 6344 5578 268 206 0 0 chr5 34028299 34028362 -169057170 + L1 LINE L1 4408 4470 -1676 1302 220 27 54 chr5 34028372 34028867 -169056665 - L1 LINE L1 -1713 4433 3985 2665 7 3 10 chr5 34031040 34031338 -169054194 - AluYa5 SINE Alu -15 296 1 304 285 36 29 chr5 34031828 34031965 -169053567 - L1M4 LINE L1 -1037 5109 4972 3090 155 38 4 chr5 34031965 34032556 -169052976 + MER4B LTR ERV1 1 779 0 1284 259 46 35 chr5 34032556 34032639 -169052893 - L1M4 LINE L1 -1171 4975 4894 2209 63 30 20 chr5 34032639 34032938 -169052594 + AluY SINE Alu 1 302 -9 1284 259 46 35 chr5 34032938 34033394 -169052138 - L1M4 LINE L1 -1252 4894 4430 266 298 0 18 chr5 34033465 34033522 -169052010 - L2 LINE L2 -69 3203 3148 1060 216 168 17 chr5 34034095 34034121 -169051411 - L1MC4 LINE L1 -21 8021 8000 2469 156 24 5 chr5 34034121 34034539 -169050993 + MSTB LTR MaLR 1 426 0 1060 216 168 17 chr5 34034539 34034869 -169050663 - L1MC4 LINE L1 -42 8000 7611 814 182 38 94 chr5 34035343 34035537 -169049995 + LTR1B LTR ERV1 1 204 -622 312 102 0 0 chr5 34035537 34035586 -169049946 + (CA)n Simple_repeat Simple_repeat 2 50 0 814 182 38 94 chr5 34035586 34035790 -169049742 + LTR1B LTR ERV1 204 448 -378 3222 165 45 13 chr5 34036059 34036768 -169048764 + L1 LINE L1 4552 5283 -863 1789 142 7 84 chr5 34036768 34037184 -169048348 + L1PA16 LINE L1 5436 5819 -337 471 125 0 0 chr5 34037179 34037259 -169048273 + L1 LINE L1 4548 4627 -1519 * 1721 162 21 18 chr5 34037259 34037585 -169047947 + L1PA16 LINE L1 5815 6148 -18 36 70 0 0 chr5 34037586 34037657 -169047875 + AT_rich Low_complexity Low_complexity 1 71 0 1604 212 11 8 chr5 34037974 34038332 -169047200 + L1MC1 LINE L1 5975 6333 0 667 213 58 114 chr5 34040431 34040804 -169044728 - LTR33A LTR ERVL -37 486 189 357 24 0 0 chr5 34040804 34040846 -169044686 + (TG)n Simple_repeat Simple_repeat 2 43 0 667 213 58 114 chr5 34040846 34041026 -169044506 - LTR33A LTR ERVL -334 189 1 584 61 0 12 chr5 34041180 34041262 -169044270 + (TGGA)n Simple_repeat Simple_repeat 2 82 0 1571 146 22 4 chr5 34042020 34042295 -169043237 + L1MC3 LINE L1 7485 7764 -21 250 214 18 0 chr5 34042367 34042423 -169043109 - Charlie4 DNA MER1_type 0 1961 1905 368 273 14 50 chr5 34042602 34042659 -169042873 + MER94 DNA DNA 1 59 -75 1936 97 7 37 chr5 34042659 34042959 -169042573 + AluY SINE Alu 2 292 -19 368 273 14 50 chr5 34042959 34043040 -169042492 + MER94 DNA DNA 59 134 0 5385 113 16 5 chr5 34043433 34044350 -169041182 - L1PB1 LINE L1 -108 6043 5116 2358 120 47 3 chr5 34045072 34045455 -169040077 - L1MA6 LINE L1 -351 5949 5550 627 322 172 30 chr5 34045753 34046346 -169039186 + L3 LINE CR1 845 1521 -56 24 0 0 0 chr5 34046452 34046476 -169039056 + AT_rich Low_complexity Low_complexity 1 24 0 277 341 48 16 chr5 34047169 34047295 -169038237 - MIR SINE MIR -62 146 17 186 43 0 0 chr5 34047584 34047607 -169037925 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 946 227 115 38 chr5 34048002 34048455 -169037077 - L1M1 LINE L1 -3975 3590 3103 837 141 22 87 chr5 34048457 34048641 -169036891 + Tigger4(Zombi) DNA MER2_type 1 172 -2559 3353 102 32 34 chr5 34048641 34049197 -169036335 + Tigger4(Zombi) DNA MER2_type 2177 2731 0 2165 254 47 21 chr5 34049232 34049981 -169035551 - L1M2 LINE L1 -4172 2039 1272 1451 102 57 4 chr5 34050168 34050413 -169035119 - AluY SINE Alu -53 258 1 564 265 94 36 chr5 34051431 34051654 -169033878 + MIR SINE MIR 2 237 -25 862 124 7 36 chr5 34051692 34051829 -169033703 - AluJb SINE Alu -179 133 1 921 259 116 19 chr5 34052961 34053382 -169032150 - LTR16B LTR ERVL 0 464 3 468 223 129 77 chr5 34055925 34056158 -169029374 + LTR28 LTR ERV1 582 1019 0 191 372 13 0 chr5 34056384 34056462 -169029070 + L2 LINE L2 2454 2532 -782 3871 261 71 48 chr5 34056482 34057411 -169028121 + L1MEc LINE L1 29 935 -5461 2125 131 0 0 chr5 34057411 34057708 -169027824 + AluSq SINE Alu 1 297 -16 3871 261 71 48 chr5 34057708 34058697 -169026835 + L1MEc LINE L1 935 1991 -4405 5115 226 65 60 chr5 34058757 34060522 -169025010 + L1M4 LINE L1 87 1936 -4710 2335 73 0 0 chr5 34060522 34060811 -169024721 + AluY SINE Alu 17 305 -6 5115 226 65 60 chr5 34060811 34061514 -169024018 + L1M4 LINE L1 1936 2634 -4012 1100 117 166 54 chr5 34061510 34061536 -169023996 + L1M2 LINE L1 5144 5166 -1131 * 293 47 23 0 chr5 34061536 34061579 -169023953 + (CAA)n Simple_repeat Simple_repeat 3 46 0 1100 117 166 54 chr5 34061579 34062038 -169023494 + L1M2 LINE L1 5166 5670 -627 2747 229 75 10 chr5 34062273 34063311 -169022221 - L1M2 LINE L1 -4986 1155 1 299 311 126 40 chr5 34063739 34063961 -169021571 + LTR33A LTR ERVL 61 301 -222 1855 192 156 0 chr5 34064563 34065000 -169020532 + MLT1D LTR MaLR 1 505 0 325 227 10 41 chr5 34065553 34065650 -169019882 + CT-rich Low_complexity Low_complexity 2 95 0 1742 192 10 10 chr5 34065976 34066288 -169019244 - AluJo SINE Alu 0 312 1 21 0 0 0 chr5 34066399 34066420 -169019112 + AT_rich Low_complexity Low_complexity 1 21 0 7185 31 16 2 chr5 34067040 34068316 -169017216 + L1PA3 LINE L1 4868 6155 0 208 278 111 0 chr5 34068955 34069027 -169016505 + MIR SINE MIR 63 142 -120 23 33 0 0 chr5 34069766 34069796 -169015736 + AT_rich Low_complexity Low_complexity 1 30 0 336 299 277 11 chr5 34069833 34070104 -169015428 + L1MEd LINE L1 27 369 -5750 24 67 0 0 chr5 34070111 34070156 -169015376 + AT_rich Low_complexity Low_complexity 1 45 0 973 204 51 37 chr5 34070287 34070503 -169015029 - AluJo SINE Alu -21 291 73 562 286 49 30 chr5 34070848 34071051 -169014481 - MIR SINE MIR -21 241 35 24 0 0 0 chr5 34071459 34071483 -169014049 + AT_rich Low_complexity Low_complexity 1 24 0 1229 134 15 5 chr5 34072203 34072404 -169013128 + MER20 DNA MER1_type 17 219 0 752 228 73 45 chr5 34072745 34073075 -169012457 - MSTD LTR MaLR 0 396 21 2098 222 32 5 chr5 34073191 34073632 -169011900 - MSTD-int LTR MaLR -170 1565 1113 378 187 0 0 chr5 34073646 34073721 -169011811 - MSTC LTR MaLR -353 75 1 22 0 0 0 chr5 34074273 34074295 -169011237 + AT_rich Low_complexity Low_complexity 1 22 0 256 310 17 26 chr5 34074450 34074566 -169010966 - L2 LINE L2 -248 3065 2951 387 258 25 8 chr5 34074602 34074722 -169010810 - MER117 DNA MER1_type -42 155 34 5837 214 14 21 chr5 34075049 34076895 -169008637 + L1HS LINE L1 3981 5789 -362 495 0 0 0 chr5 34076895 34076950 -169008582 + (TA)n Simple_repeat Simple_repeat 2 56 0 5837 214 14 21 chr5 34076950 34077310 -169008222 + L1HS LINE L1 5789 6150 -1 194 296 14 0 chr5 34077640 34077711 -169007821 - MIR SINE MIR -135 127 56 231 324 145 17 chr5 34077881 34078060 -169007472 - L2 LINE L2 -363 2951 2750 531 243 138 28 chr5 34078415 34078633 -169006899 + MIR SINE MIR 21 262 0 386 313 136 28 chr5 34078973 34079149 -169006383 + MIR3 SINE MIR 6 200 -8 230 319 77 0 chr5 34079507 34079598 -169005934 - L2 LINE L2 -327 2986 2889 236 291 18 3 chr5 34080766 34080854 -169004678 - MIR SINE MIR -63 145 80 39 0 0 0 chr5 34080914 34080953 -169004579 + AT_rich Low_complexity Low_complexity 1 39 0 518 239 103 29 chr5 34081080 34081413 -169004119 - LTR33 LTR ERVL -8 513 99 1764 279 104 23 chr5 34081447 34082348 -169003184 + L2 LINE L2 2206 3179 -134 2697 7 0 10 chr5 34082726 34083025 -169002507 - AluYa5 SINE Alu -15 296 1 2086 114 132 26 chr5 34083663 34084050 -169001482 + MSTA LTR MaLR 1 428 0 28 29 0 0 chr5 34085339 34085374 -169000158 + AT_rich Low_complexity Low_complexity 1 35 0 2297 88 3 0 chr5 34085615 34085911 -168999621 + AluY SINE Alu 1 297 -14 1997 229 96 21 chr5 34086167 34086784 -168998748 + L1MCb LINE L1 8 670 -5375 259 143 0 61 chr5 34086859 34086908 -168998624 + MLT2F LTR ERVL 583 663 0 635 163 37 0 chr5 34086922 34087057 -168998475 + L1MA8 LINE L1 6152 6291 0 294 239 0 0 chr5 34087595 34087666 -168997866 + ERVL LTR ERVL 853 923 -4841 2109 208 68 139 chr5 34087666 34088847 -168996685 - MER52A LTR ERV1 0 1755 659 252 217 17 0 chr5 34088981 34089041 -168996491 - MSTD LTR MaLR 0 396 336 7059 206 79 63 chr5 34089096 34091603 -168993929 - MER109 Unknown Unknown -80 2352 1 29 0 0 0 chr5 34092188 34092217 -168993315 + AT_rich Low_complexity Low_complexity 1 29 0 904 263 50 50 chr5 34092219 34092557 -168992975 - MSTD LTR MaLR -56 340 3 3441 274 43 39 chr5 34092563 34093952 -168991580 + ERVL LTR ERVL 1065 2497 -3267 291 302 0 12 chr5 34094684 34094770 -168990762 - ERVL LTR ERVL -4340 1424 1340 1258 158 64 63 chr5 34095216 34095603 -168989929 + L1MA4 LINE L1 5550 5939 -361 1879 148 24 30 chr5 34095849 34095951 -168989581 + L1MA4 LINE L1 5925 6026 -274 2416 101 0 26 chr5 34095951 34096297 -168989235 - MER1B DNA MER1_type 0 337 1 1879 148 24 30 chr5 34096297 34096567 -168988965 + L1MA4 LINE L1 6026 6295 -5 5543 242 20 102 chr5 34096704 34098960 -168986572 + L1M2a LINE L1 399 2470 -5096 2984 242 42 9 chr5 34098948 34100275 -168985257 + L1M2a LINE L1 2374 3752 -3813 * 8924 212 30 4 chr5 34100528 34103002 -168982530 + L1M2a LINE L1 3798 6384 -1181 995 272 178 24 chr5 34103161 34103672 -168981860 + MLT1G LTR MaLR 1 590 0 306 251 204 47 chr5 34103823 34104014 -168981518 + MIR SINE MIR 1 221 -41 728 89 9 0 chr5 34105193 34105326 -168980206 - L1PA2 LINE L1 0 6155 6043 3678 29 4 4 chr5 34105326 34105776 -168979756 + L1PA3 LINE L1 5413 5862 -293 492 179 0 11 chr5 34105904 34105999 -168979533 + L1MA4A LINE L1 3602 3695 -2451 1415 213 0 0 chr5 34106004 34106262 -168979270 + AluJo SINE Alu 43 300 -12 4493 216 16 10 chr5 34106262 34106546 -168978986 + L1MA4A LINE L1 3696 3977 -2169 2061 137 3 0 chr5 34106546 34106838 -168978694 + AluSx SINE Alu 1 293 -19 4493 216 16 10 chr5 34106838 34107595 -168977937 + L1MA4A LINE L1 3977 4744 -1402 2911 291 41 20 chr5 34107612 34108468 -168977064 + L1PA16 LINE L1 1 874 -5913 * 4336 230 39 15 chr5 34108444 34109649 -168975883 + L1PA16 LINE L1 1173 2416 -4381 * 4894 213 9 11 chr5 34109644 34110696 -168974836 + L1PA16 LINE L1 3921 4971 -1826 895 167 36 14 chr5 34110710 34110932 -168974600 + L1PA16 LINE L1 5756 5982 -815 1757 103 7 15 chr5 34111298 34111571 -168973961 + L1PA16 LINE L1 5948 6218 -598 58 59 0 8 chr5 34111582 34111665 -168973867 + AT_rich Low_complexity Low_complexity 1 84 -33 3041 150 63 7 chr5 34111665 34112237 -168973295 + L1PA16 LINE L1 6212 6815 -2 58 59 0 8 chr5 34112237 34112271 -168973261 + AT_rich Low_complexity Low_complexity 84 117 0 3032 192 75 5 chr5 34112295 34113584 -168971948 + L1MA4A LINE L1 4734 6293 -7 895 186 40 34 chr5 34113621 34113798 -168971734 + AluJo SINE Alu 1 178 -134 1392 191 36 18 chr5 34113801 34114079 -168971453 - AluJo SINE Alu -19 283 1 1397 257 77 80 chr5 34114140 34115194 -168970338 - HAL1 LINE L1 -2 2505 1455 1674 155 90 31 chr5 34115232 34115586 -168969946 + THE1C LTR MaLR 1 375 0 392 324 80 55 chr5 34115627 34115902 -168969630 - HAL1 LINE L1 -2224 283 2 6809 52 7 3 chr5 34115981 34117302 -168968230 - L1PA6 LINE L1 -2 6152 4828 4767 251 59 29 chr5 34118000 34119678 -168965854 + L1M4c LINE L1 1266 3204 -3178 2565 24 0 3 chr5 34119678 34119973 -168965559 + AluY SINE Alu 1 294 -17 4767 251 59 29 chr5 34119973 34121048 -168964484 + L1M4c LINE L1 3204 4246 -2136 18415 111 56 6 chr5 34121051 34124383 -168961149 + L1PBa LINE L1 36 3534 -3328 380 169 0 0 chr5 34124375 34124446 -168961086 + L1M4c LINE L1 3611 3681 -2701 * 2653 222 2 0 chr5 34124433 34125201 -168960331 + L1M4c LINE L1 4201 5124 -1258 229 154 108 0 chr5 34125196 34125261 -168960271 + L1MC3 LINE L1 7698 7769 -16 * 1365 241 46 9 chr5 34125320 34125756 -168959776 + L1ME2 LINE L1 5023 5474 -908 505 193 9 46 chr5 34125759 34125868 -168959664 - Tigger5 DNA MER2_type 0 2323 2219 287 222 0 16 chr5 34125900 34125963 -168959569 - Tigger5 DNA MER2_type -1 2322 2261 1355 215 69 161 chr5 34126729 34126817 -168958715 + L1ME2 LINE L1 5464 5559 -841 1867 173 0 3 chr5 34126817 34127118 -168958414 + AluJb SINE Alu 1 300 -12 1355 215 69 161 chr5 34127118 34127432 -168958100 + L1ME2 LINE L1 5559 5900 -500 746 134 47 0 chr5 34127432 34127559 -168957973 - L1MB5 LINE L1 -9 6165 6033 1355 215 69 161 chr5 34127559 34128196 -168957336 + L1ME2 LINE L1 5900 6399 -1 232 309 66 15 chr5 34128215 34128351 -168957181 - MLT1J2 LTR MaLR -241 209 67 234 0 0 0 chr5 34129213 34129239 -168956293 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1029 249 49 8 chr5 34129742 34129987 -168955545 - MIR SINE MIR -5 257 3 432 0 0 0 chr5 34130102 34130150 -168955382 + (TG)n Simple_repeat Simple_repeat 1 48 0 2522 62 0 3 chr5 34130696 34131002 -168954530 - AluY SINE Alu -6 305 1 2605 129 46 9 chr5 34131004 34131437 -168954095 - L1PA16 LINE L1 -11 6155 5707 3509 147 39 13 chr5 34131450 34131674 -168953858 + L1P4 LINE L1 4615 4832 -1334 2134 124 0 16 chr5 34131674 34131988 -168953544 - AluSx SINE Alu -3 309 1 3509 147 39 13 chr5 34131988 34132826 -168952706 + L1P4 LINE L1 4832 5701 -465 * 4541 194 28 2 chr5 34132822 34132885 -168952647 - L1M4c LINE L1 -1668 5289 5229 279 54 0 0 chr5 34132885 34132922 -168952610 + (TG)n Simple_repeat Simple_repeat 2 38 0 4541 194 28 2 chr5 34132922 34133794 -168951738 - L1M4c LINE L1 -1728 5229 4330 384 331 40 0 chr5 34133794 34133918 -168951614 + MIR SINE MIR 20 148 -114 423 241 92 63 chr5 34134090 34134290 -168951242 - MLT1L LTR MaLR -224 391 119 239 321 28 9 chr5 34134359 34134468 -168951064 + MIR SINE MIR 144 254 -8 236 316 171 8 chr5 34136908 34137025 -168948507 - L2 LINE L2 0 3272 3137 2473 58 0 3 chr5 34137206 34137501 -168948031 + AluY SINE Alu 5 298 -13 2354 92 0 0 chr5 34138299 34138593 -168946939 + AluSc SINE Alu 6 299 -10 325 243 0 0 chr5 34138760 34138830 -168946702 - Tigger5 DNA MER2_type -6 2317 2248 850 281 38 25 chr5 34138906 34139233 -168946299 - MLT1J1 LTR MaLR -114 332 1 294 301 79 122 chr5 34139885 34140343 -168945189 + L2 LINE L2 2825 3262 -10 752 259 86 56 chr5 34141113 34141522 -168944010 - MLT1J1 LTR MaLR 0 446 26 3330 214 11 6 chr5 34141584 34142234 -168943298 - MER82 DNA MER2_type 0 653 1 244 139 0 0 chr5 34142374 34142410 -168943122 + MLT1L LTR MaLR 54 89 -526 992 182 42 84 chr5 34142819 34143081 -168942451 - L1MB8 LINE L1 -9 6169 5920 289 74 19 19 chr5 34143081 34143135 -168942397 + (CTATT)n Simple_repeat Simple_repeat 2 55 0 992 182 42 84 chr5 34143135 34143180 -168942352 - L1MB8 LINE L1 -258 5920 5875 * 2321 216 36 65 chr5 34143179 34143981 -168941551 - L1M4c LINE L1 -3231 3726 2948 4313 217 68 14 chr5 34144723 34146346 -168939186 - L1M4c LINE L1 -4574 2564 663 1487 253 59 7 chr5 34146363 34146639 -168938893 - MLT1C LTR MaLR 0 467 158 2313 85 0 23 chr5 34146639 34146944 -168938588 - AluSc SINE Alu -11 298 1 1487 253 59 7 chr5 34146944 34147109 -168938423 - MLT1C LTR MaLR -309 158 3 1940 208 26 8 chr5 34147210 34147590 -168937942 - MSTD LTR MaLR -3 393 7 4313 144 27 3 chr5 34147884 34148578 -168936954 + MER50 LTR ERV1 1 711 -23 1470 216 17 36 chr5 34148856 34149217 -168936315 + MLT1A1 LTR MaLR 1 354 -11 455 286 146 12 chr5 34149229 34149400 -168936132 - MIR SINE MIR -49 213 20 1079 258 15 74 chr5 34150033 34150217 -168935315 + L1M3b LINE L1 8 166 -6115 2250 75 4 4 chr5 34150217 34150525 -168935007 + AluY SINE Alu 1 308 0 1079 258 15 74 chr5 34150525 34150676 -168934856 + L1M3b LINE L1 166 324 -5957 11146 212 41 57 chr5 34150906 34154307 -168931225 + L1M3b LINE L1 344 3799 -2551 270 120 200 0 chr5 34154307 34154357 -168931175 + 5S rRNA rRNA 32 91 -30 11146 212 41 57 chr5 34154357 34155663 -168929869 + L1M3b LINE L1 3799 5125 -1225 1989 149 0 0 chr5 34155663 34156079 -168929453 + AluSx SINE Alu 1 312 0 11146 212 41 57 chr5 34156079 34156225 -168929307 + L1M3b LINE L1 5125 5272 -1078 1980 151 73 14 chr5 34156225 34156569 -168928963 - THE1B LTR MaLR 0 364 1 11542 103 9 0 chr5 34156569 34158135 -168927397 - THE1B-int LTR MaLR 0 1580 1 1876 131 125 18 chr5 34158135 34158464 -168927068 - THE1B LTR MaLR 0 364 1 11146 212 41 57 chr5 34158464 34158670 -168926862 + L1M3b LINE L1 4842 5050 -1300 1026 16 0 16 chr5 34158670 34158790 -168926742 + L1PA2 LINE L1 6028 6148 -7 2284 81 3 10 chr5 34158911 34159206 -168926326 + AluSx SINE Alu 1 293 -19 189 0 0 0 chr5 34160669 34160690 -168924842 + (T)n Simple_repeat Simple_repeat 1 21 0 42083 40 1 0 chr5 34160752 34166902 -168918630 - L1PA2 LINE L1 -1 6154 2 16540 185 27 9 chr5 34166904 34167166 -168918366 - L1PA15-16 LINE L1 -3049 3800 3544 2187 99 3 7 chr5 34167166 34167476 -168918056 - AluSp SINE Alu 0 309 1 16540 185 27 9 chr5 34167476 34170937 -168914595 - L1PA15-16 LINE L1 -3305 3544 5 3172 219 29 25 chr5 34170962 34171199 -168914333 - L1 LINE L1 -2994 3854 3620 2023 150 127 18 chr5 34171199 34171585 -168913947 - MSTA LTR MaLR 0 428 1 3172 219 29 25 chr5 34171585 34172024 -168913508 - L1 LINE L1 -3228 3620 3185 2664 129 31 12 chr5 34172024 34172444 -168913088 + MSTA LTR MaLR 1 428 0 8545 190 23 4 chr5 34172444 34174062 -168911470 + MSTA-int LTR MaLR 1 1649 -2 2713 129 24 7 chr5 34174066 34174485 -168911047 + MSTA LTR MaLR 3 428 0 3172 219 29 25 chr5 34174485 34174949 -168910583 - L1 LINE L1 -3665 3183 2701 6141 96 20 10 chr5 34174969 34176230 -168909302 - L1PA10 LINE L1 0 6168 4899 312 27 0 0 chr5 34176230 34176267 -168909265 + (TG)n Simple_repeat Simple_repeat 1 37 0 1254 319 66 26 chr5 34176465 34177074 -168908458 - L1 LINE L1 -6156 693 61 * 5737 211 30 43 chr5 34177069 34178022 -168907510 - L1M4 LINE L1 -1487 4659 3738 5921 153 52 28 chr5 34178022 34178275 -168907257 - Tigger3b DNA MER2_type -1798 1230 985 2009 141 0 3 chr5 34178275 34178600 -168906932 + AluSx SINE Alu 1 324 0 5921 153 52 28 chr5 34178600 34179545 -168905987 - Tigger3b DNA MER2_type -2043 985 1 5737 211 30 43 chr5 34179545 34180398 -168905134 - L1M4 LINE L1 -2408 3738 2876 2609 238 30 7 chr5 34180583 34181374 -168904158 - L1MCa LINE L1 -3050 3376 2553 527 118 11 0 chr5 34181374 34181467 -168904065 + L1PB1 LINE L1 6058 6151 0 2609 238 30 7 chr5 34181467 34181737 -168903795 - L1MCa LINE L1 -3873 2553 2291 * 7378 179 54 29 chr5 34181730 34183475 -168902057 - L1MCa LINE L1 -4498 1950 28 195 330 117 56 chr5 34183678 34183875 -168901657 - L2 LINE L2 -1155 2159 1951 760 256 43 0 chr5 34183882 34184116 -168901416 + L1MC4 LINE L1 6858 7101 -941 1950 226 27 59 chr5 34184117 34184692 -168900840 + MLT2B1 LTR ERVL 1 516 -4 233 159 23 0 chr5 34184697 34184741 -168900791 + L1MC4 LINE L1 7099 7143 -899 1679 264 54 15 chr5 34184813 34185426 -168900106 + L1MC4 LINE L1 7214 7850 -192 300 240 110 0 chr5 34185433 34185533 -168899999 + L1MC4 LINE L1 7930 8040 -2 1125 120 25 0 chr5 34187469 34187627 -168897905 + FRAM SINE Alu 1 161 -15 40116 39 25 3 chr5 34187629 34193466 -168892066 + L1PA4 LINE L1 1 5965 -190 5838 32 7 1 chr5 34193569 34194318 -168891214 + L1PA3 LINE L1 5292 6044 -111 1254 318 47 26 chr5 34194490 34194984 -168890548 - L2 LINE L2 0 3313 2810 3292 68 2 5 chr5 34195654 34196093 -168889439 + L1PA8 LINE L1 5727 6164 -8 26 0 0 0 chr5 34198131 34198157 -168887375 + AT_rich Low_complexity Low_complexity 1 26 0 1931 150 46 22 chr5 34198372 34198738 -168886794 - THE1C LTR MaLR 0 375 1 29 94 0 0 chr5 34199968 34200053 -168885479 + AT_rich Low_complexity Low_complexity 1 85 0 822 237 6 6 chr5 34200230 34200407 -168885125 - MER5B DNA MER1_type -1 177 1 1839 156 3 46 chr5 34200434 34200760 -168884772 - AluJb SINE Alu 0 312 1 2251 119 3 0 chr5 34200825 34201120 -168884412 + AluSx SINE Alu 1 296 -16 193 156 16 31 chr5 34203025 34203089 -168882443 + T-rich Low_complexity Low_complexity 3 65 0 399 98 0 0 chr5 34203297 34203358 -168882174 + (CA)n Simple_repeat Simple_repeat 1 61 0 195 301 88 37 chr5 34204351 34204487 -168881045 - L2 LINE L2 -3 3310 3168 2087 99 11 0 chr5 34204522 34204794 -168880738 + AluSx SINE Alu 34 308 -4 624 322 75 63 chr5 34205141 34206059 -168879473 - L2 LINE L2 -675 2639 1711 1831 88 18 29 chr5 34206085 34206357 -168879175 + AluSq SINE Alu 36 304 -9 213 351 113 33 chr5 34206541 34206877 -168878655 - L2 LINE L2 -1905 1409 1047 899 251 71 0 chr5 34207031 34207326 -168878206 + L1MC4a LINE L1 5613 5928 -1880 185 103 77 0 chr5 34207332 34207371 -168878161 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 36 62 0 0 chr5 34207473 34207537 -168877995 + AT_rich Low_complexity Low_complexity 1 64 0 247 274 95 12 chr5 34209018 34209102 -168876430 + L2 LINE L2 3138 3228 -44 334 278 56 0 chr5 34209113 34209221 -168876311 + MIR SINE MIR 106 219 -43 336 357 32 54 chr5 34209646 34209831 -168875701 + L2 LINE L2 3092 3272 0 1167 232 46 32 chr5 34209835 34210119 -168875413 - AluJb SINE Alu -13 289 2 312 297 46 95 chr5 34210186 34210533 -168874999 + L2 LINE L2 2154 2483 -831 311 304 143 7 chr5 34210548 34210725 -168874807 + MIR SINE MIR 4 201 -61 327 306 75 52 chr5 34211470 34211604 -168873928 - L2 LINE L2 0 3272 3136 227 273 83 8 chr5 34211889 34211906 -168873626 - L1MA10 LINE L1 0 6334 6318 2815 219 136 31 chr5 34211906 34213083 -168872449 - L1ME2 LINE L1 -8 6156 4873 1873 166 33 6 chr5 34213146 34213483 -168872049 + MER46B DNA MER2_type 7 227 -9 2272 127 31 3 chr5 34213647 34214001 -168871531 + THE1B LTR MaLR 1 364 0 366 357 41 15 chr5 34214414 34214610 -168870922 - L1MEc LINE L1 -6031 365 165 279 348 64 0 chr5 34214684 34214825 -168870707 - L2 LINE L2 -559 2755 2606 675 241 89 59 chr5 34214840 34215076 -168870456 - MIR SINE MIR -5 257 15 2020 117 0 0 chr5 34215392 34215658 -168869874 + AluSx SINE Alu 17 282 -30 191 343 152 9 chr5 34216557 34216662 -168868870 + MIR SINE MIR 25 144 -118 1269 229 81 45 chr5 34216673 34217118 -168868414 + MLT1C LTR MaLR 7 467 0 261 0 0 0 chr5 34219036 34219065 -168866467 + (CA)n Simple_repeat Simple_repeat 2 30 0 2243 113 0 3 chr5 34219453 34219754 -168865778 - AluSq SINE Alu -13 300 1 9711 37 4 0 chr5 34219818 34221565 -168863967 + L1PA4 LINE L1 4202 5955 -200 6064 231 81 50 chr5 34222017 34223208 -168862324 + L1MC4a LINE L1 5192 6344 -1464 2260 132 28 6 chr5 34223208 34223564 -168861968 - THE1B LTR MaLR 0 364 1 6064 231 81 50 chr5 34223564 34224714 -168860818 + L1MC4a LINE L1 6344 7602 -206 207 276 81 35 chr5 34224928 34225015 -168860517 + L2 LINE L2 2528 2618 -696 2175 98 0 13 chr5 34275240 34275546 -168809986 - AluSg SINE Alu -8 302 1 2126 107 3 22 chr5 34275566 34275884 -168809648 - AluSx SINE Alu 0 312 1 351 168 0 134 chr5 34275947 34276066 -168809466 - AluSg/x SINE Alu 0 302 200 2058 105 11 7 chr5 34276161 34276447 -168809085 - AluSx SINE Alu -15 297 11 2551 156 3 12 chr5 34276455 34277094 -168808438 - MER72 LTR ERV1 -39 683 1 756 286 40 48 chr5 34277766 34278047 -168807485 + L1MC4a LINE L1 5422 5640 -481 2426 67 7 0 chr5 34278047 34278346 -168807186 - AluY SINE Alu -10 301 1 756 286 40 48 chr5 34278346 34278525 -168807007 + L1MC4a LINE L1 5640 5819 -302 189 294 59 0 chr5 34278827 34278878 -168806654 - MER5B DNA MER1_type 0 178 125 457 366 103 20 chr5 34279677 34280084 -168805448 - L1MC/D LINE L1 -2011 5797 5357 2142 94 3 11 chr5 34280087 34280374 -168805158 - AluSp SINE Alu -28 285 1 234 315 56 49 chr5 34280859 34281021 -168804511 + MER5A DNA MER1_type 21 183 -6 553 251 133 9 chr5 34281095 34281306 -168804226 - L2 LINE L2 -15 3298 3062 30 0 0 0 chr5 34282182 34282212 -168803320 + AT_rich Low_complexity Low_complexity 1 30 0 7547 80 17 0 chr5 34282215 34284035 -168801497 - L1PA7 LINE L1 -7 6147 4309 549 168 42 35 chr5 34284153 34284296 -168801236 - L1MC/D LINE L1 -805 5341 5198 261 146 0 0 chr5 34284305 34284353 -168801179 + (TTTTC)n Simple_repeat Simple_repeat 5 52 0 473 305 76 23 chr5 34285399 34285796 -168799736 + L1MC4 LINE L1 7602 8019 -23 1098 201 29 112 chr5 34287921 34288369 -168797163 + L1ME1 LINE L1 5751 6161 -5 294 226 22 58 chr5 34288380 34288517 -168797015 + L1M4 LINE L1 5199 5330 -816 386 312 80 34 chr5 34288532 34288795 -168796737 + L1MEc LINE L1 1906 2180 -4216 21 57 0 0 chr5 34288819 34288854 -168796678 + AT_rich Low_complexity Low_complexity 1 35 0 266 351 71 0 chr5 34288933 34289241 -168796291 + L1MEc LINE L1 1455 1784 -4612 288 0 0 0 chr5 34289254 34289286 -168796246 + (TG)n Simple_repeat Simple_repeat 2 33 0 372 237 15 67 chr5 34289336 34289471 -168796061 - LTR16A LTR ERVL -2 448 321 1652 233 70 38 chr5 34289798 34290148 -168795384 - MLT1E LTR MaLR -2 591 210 2303 175 26 7 chr5 34290148 34290566 -168794966 - MSTB LTR MaLR 0 426 1 1652 233 70 38 chr5 34290566 34290783 -168794749 - MLT1E LTR MaLR -383 210 1 23 54 0 0 chr5 34291106 34291143 -168794389 + AT_rich Low_complexity Low_complexity 1 37 0 273 286 11 11 chr5 34292108 34292199 -168793333 + MER96 DNA MER1_type? 85 175 0 255 114 0 0 chr5 34292344 34292388 -168793144 + (TA)n Simple_repeat Simple_repeat 2 45 0 205 288 14 0 chr5 34292401 34292474 -168793058 + (TA)n Simple_repeat Simple_repeat 1 74 0 2865 79 50 17 chr5 34292769 34293189 -168792343 - L1PA11 LINE L1 0 6174 5741 6040 95 18 6 chr5 34293301 34294407 -168791125 - L1PA11 LINE L1 -632 5542 4429 820 103 0 0 chr5 34294407 34294514 -168791018 - U6 snRNA snRNA 0 107 1 836 285 33 12 chr5 34294565 34294807 -168790725 - MIR SINE MIR -8 254 8 506 271 50 11 chr5 34294812 34294993 -168790539 - L1ME LINE L1 -330 5791 5604 502 298 12 6 chr5 34298938 34299106 -168786426 + LTR33 LTR ERVL 10 178 -343 290 236 79 14 chr5 34300058 34300198 -168785334 - MER113 DNA MER1_type? -372 149 1 1510 173 151 34 chr5 34300208 34300624 -168784908 + MLT1C LTR MaLR 1 465 -2 2242 90 0 3 chr5 34300640 34300928 -168784604 + AluY SINE Alu 13 299 -12 241 350 60 10 chr5 34301135 34301235 -168784297 + MIR SINE MIR 16 120 -88 204 133 50 0 chr5 34301941 34302001 -168783531 + (CAAAT)n Simple_repeat Simple_repeat 1 63 0 258 341 0 12 chr5 34302271 34302353 -168783179 - L2 LINE L2 -44 3228 3148 317 344 91 13 chr5 34302368 34302598 -168782934 - MIR SINE MIR -8 254 7 252 293 112 17 chr5 34303682 34303798 -168781734 - MIR SINE MIR -62 146 20 401 319 22 21 chr5 34304189 34304339 -168781193 + MIR SINE MIR 5 154 -69 333 281 29 29 chr5 34304710 34304881 -168780651 - L1ME LINE L1 -316 5805 5635 4278 21 0 0 chr5 34305387 34305909 -168779623 - L1P LINE L1 -1428 4718 4197 2409 141 73 2 chr5 34306009 34306449 -168779083 + MER31A LTR ERV1 15 485 0 216 362 0 64 chr5 34306449 34306543 -168778989 + MIR SINE MIR 45 132 -76 284 192 0 0 chr5 34306896 34306948 -168778584 + MER66B LTR ERV1 295 346 -140 237 319 50 39 chr5 34307222 34307404 -168778128 + Charlie2 DNA MER1_type 27 210 -2652 1416 130 40 0 chr5 34307404 34307657 -168777875 + L1MA5 LINE L1 5863 6125 -175 16491 56 4 11 chr5 34307667 34310618 -168774914 - L1PA6 LINE L1 -6 6148 3229 7644 27 1 0 chr5 34310613 34312044 -168773488 + L1PA4 LINE L1 4723 6155 0 * 741 294 70 36 chr5 34312930 34313314 -168772218 + LTR16A LTR ERVL 27 423 -27 186 43 0 0 chr5 34313335 34313358 -168772174 + (CAA)n Simple_repeat Simple_repeat 2 24 0 190 226 94 0 chr5 34314454 34314507 -168771025 - L3 LINE CR1 -1261 316 259 842 310 14 5 chr5 34314727 34314943 -168770589 - MIR SINE MIR -13 249 32 1874 146 56 21 chr5 34316725 34317102 -168768430 - MLT1B LTR MaLR 0 390 1 416 271 28 0 chr5 34317987 34318094 -168767438 + MIR SINE MIR 149 258 -4 422 221 62 72 chr5 34318120 34318315 -168767217 + MLT1L LTR MaLR 418 610 -5 1689 165 4 18 chr5 34318514 34318786 -168766746 + AluJb SINE Alu 15 282 -30 482 326 46 5 chr5 34318832 34319028 -168766504 + MIR SINE MIR 1 204 -58 2692 126 16 23 chr5 34319755 34320198 -168765334 + L1PA15 LINE L1 5717 6156 -9 212 371 95 0 chr5 34320404 34320509 -168765023 - L2 LINE L2 -11 3261 3147 21 57 0 0 chr5 34320509 34320544 -168764988 + AT_rich Low_complexity Low_complexity 1 35 0 738 164 0 0 chr5 34320733 34320849 -168764683 + FLAM_C SINE Alu 1 116 -27 372 263 26 0 chr5 34321279 34321393 -168764139 - MIR3 SINE MIR -7 201 85 428 270 18 84 chr5 34322276 34322502 -168763030 + LTR33A LTR ERVL 308 518 -5 2121 103 7 14 chr5 34322530 34322820 -168762712 + AluSx SINE Alu 18 305 -7 787 241 32 44 chr5 34325912 34326161 -168759371 - MER102a DNA MER1_type -1 329 84 7054 106 35 15 chr5 34326565 34327472 -168758060 - Tigger1 DNA MER2_type -5 2413 1477 2193 136 0 0 chr5 34327472 34327774 -168757758 - AluSg SINE Alu -8 302 1 7054 106 35 15 chr5 34327774 34328008 -168757524 - Tigger1 DNA MER2_type -941 1477 1249 737 224 0 0 chr5 34328009 34328143 -168757389 + FLAM_A SINE Alu 1 134 -8 2005 115 3 21 chr5 34328143 34328473 -168757059 - Tigger1 DNA MER2_type -1160 1258 935 2176 137 41 77 chr5 34328502 34328970 -168756562 - Tigger1 DNA MER2_type -1967 451 1 1806 161 3 18 chr5 34329839 34330148 -168755384 + AluJb SINE Alu 1 305 0 502 272 98 31 chr5 34330853 34331068 -168754464 - MIR SINE MIR -13 249 28 1830 161 15 66 chr5 34331251 34331661 -168753871 - MLT1B LTR MaLR -1 389 1 1867 183 25 6 chr5 34331870 34332225 -168753307 + MLT1A1 LTR MaLR 4 365 0 930 264 21 12 chr5 34332486 34332728 -168752804 + MIR SINE MIR 2 245 -17 833 338 70 34 chr5 34332835 34333391 -168752141 - MLT1K LTR MaLR -12 576 1 253 313 65 25 chr5 34335445 34335646 -168749886 - MLT1K LTR MaLR -13 575 367 723 176 38 124 chr5 34336103 34336154 -168749378 - MIR SINE MIR -30 232 178 2045 156 0 0 chr5 34336154 34336455 -168749077 - AluSx SINE Alu -11 301 1 723 176 38 124 chr5 34336455 34336503 -168749029 - MIR SINE MIR -84 178 127 2164 119 0 3 chr5 34336503 34336798 -168748734 + AluSg SINE Alu 1 294 -16 723 176 38 124 chr5 34336798 34336907 -168748625 - MIR SINE MIR -135 127 41 309 51 0 0 chr5 34337233 34337272 -168748260 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1106 87 29 52 chr5 34337375 34337547 -168747985 - L1PA11 LINE L1 -6 6168 6001 1306 229 59 31 chr5 34337755 34338144 -168747388 + MLT1C LTR MaLR 63 462 -5 433 247 183 8 chr5 34338163 34338414 -168747118 + LTR50 LTR ERVL 18 312 -483 252 299 36 98 chr5 34338655 34338722 -168746810 + MIR SINE MIR 67 137 -125 1524 151 110 11 chr5 34338722 34338994 -168746538 - AluJo SINE Alu -9 303 5 252 299 36 98 chr5 34338994 34339120 -168746412 + MIR SINE MIR 137 248 -14 207 139 28 0 chr5 34340389 34340425 -168745107 + L2 LINE L2 2765 2801 -513 204 370 43 0 chr5 34340931 34341023 -168744509 + MIR SINE MIR 46 141 -121 396 289 31 25 chr5 34341898 34342057 -168743475 - L1ME LINE L1 -447 5723 5564 1919 192 70 36 chr5 34342059 34342434 -168743098 - MSTB2 LTR MaLR 0 457 96 2184 89 98 9 chr5 34342434 34342760 -168742772 + THE1A LTR MaLR 1 355 0 12000 91 1 6 chr5 34342760 34344347 -168741185 + THE1A-int LTR MaLR 1 1580 0 2717 82 6 0 chr5 34344347 34344700 -168740832 + THE1A LTR MaLR 1 355 0 1919 192 70 36 chr5 34344700 34344764 -168740768 - MSTB2 LTR MaLR -360 97 1 316 242 110 0 chr5 34344764 34344855 -168740677 - L1ME LINE L1 -604 5566 5466 22 80 0 0 chr5 34344917 34344967 -168740565 + AT_rich Low_complexity Low_complexity 1 50 0 1636 171 87 106 chr5 34345098 34345551 -168739981 + MLT2B1 LTR ERVL 1 444 -76 204 97 0 0 chr5 34345551 34345582 -168739950 + (CA)n Simple_repeat Simple_repeat 2 32 0 1636 171 87 106 chr5 34345582 34345656 -168739876 + MLT2B1 LTR ERVL 444 518 -2 872 125 0 0 chr5 34345799 34345935 -168739597 - L1PA15 LINE L1 -6 6159 6024 567 308 11 11 chr5 34346043 34346225 -168739307 + MIR SINE MIR 48 229 -33 35 71 0 0 chr5 34347337 34347407 -168738125 + AT_rich Low_complexity Low_complexity 1 70 0 4343 135 59 12 chr5 34347565 34348315 -168737217 - LTR1 LTR ERV1 0 785 1 629 245 86 0 chr5 34348522 34348673 -168736859 - FRAM SINE Alu -2 164 1 316 307 6 39 chr5 34348674 34348853 -168736679 - L1ME3A LINE L1 -299 5871 5699 483 265 48 0 chr5 34348951 34349117 -168736415 - MER63C DNA MER1_type -2 928 755 292 80 20 0 chr5 34349225 34349275 -168736257 - MER63C DNA MER1_type -420 510 460 2074 109 0 7 chr5 34349275 34349597 -168735935 + AluSx SINE Alu 1 320 0 436 195 195 0 chr5 34349597 34349684 -168735848 + AluSc SINE Alu 133 236 -73 1017 198 9 18 chr5 34349722 34349944 -168735588 - MER63C DNA MER1_type -458 472 253 741 223 6 0 chr5 34350256 34350413 -168735119 + MIR SINE MIR 104 261 -1 211 246 85 51 chr5 34350339 34350457 -168735075 - MIR SINE MIR 0 262 141 * 678 82 0 0 chr5 34350794 34350891 -168734641 + L1P LINE L1 4127 4223 -1923 270 30 0 0 chr5 34350902 34350935 -168734597 + L1P LINE L1 4211 4243 -1903 2342 93 3 3 chr5 34351049 34351359 -168734173 + AluSg SINE Alu 1 310 0 412 343 23 12 chr5 34351722 34351894 -168733638 + MIR SINE MIR 12 185 -77 21 36 0 0 chr5 34352120 34352148 -168733384 + AT_rich Low_complexity Low_complexity 1 28 0 302 266 117 11 chr5 34353467 34353561 -168731971 - L2 LINE L2 -50 3263 3160 2127 119 33 3 chr5 34353573 34353875 -168731657 + AluSx SINE Alu 1 311 -1 685 347 89 55 chr5 34354031 34354746 -168730786 - L2 LINE L2 -420 2894 2155 1051 193 152 12 chr5 34355562 34355806 -168729726 + AluJo SINE Alu 4 281 -31 183 80 0 0 chr5 34355811 34355836 -168729696 + (TAA)n Simple_repeat Simple_repeat 2 26 0 531 276 79 35 chr5 34356255 34356483 -168729049 - L2 LINE L2 -2 3311 3074 * 3718 245 209 5 chr5 34356458 34357845 -168727687 - L2 LINE L2 -350 2964 1321 370 314 79 63 chr5 34358134 34358449 -168727083 - L2 LINE L2 -5 3308 2989 1433 47 0 0 chr5 34358532 34358703 -168726829 - AluYb8 SINE Alu -12 306 136 474 241 91 37 chr5 34358703 34358890 -168726642 - MIR SINE MIR -53 209 13 617 262 57 61 chr5 34358911 34359140 -168726392 + MIR SINE MIR 3 230 -32 762 210 99 12 chr5 34359149 34359392 -168726140 - MER33 DNA MER1_type 0 324 61 183 42 0 0 chr5 34360073 34360097 -168725435 + (T)n Simple_repeat Simple_repeat 1 24 0 266 236 313 14 chr5 34360233 34360377 -168725155 - MIR SINE MIR -56 206 20 999 282 129 59 chr5 34360514 34361004 -168724528 + L2 LINE L2 1563 2086 -1228 209 274 170 9 chr5 34361588 34361694 -168723838 - L2 LINE L2 -225 3047 2925 185 283 133 0 chr5 34362071 34362131 -168723401 + L3 LINE CR1 1380 1447 -130 201 278 0 0 chr5 34362252 34362306 -168723226 - L2 LINE L2 -92 3221 3168 321 287 32 0 chr5 34363063 34363157 -168722375 + MLT1K LTR MaLR 175 271 -317 1161 162 117 104 chr5 34363180 34363578 -168721954 + MLT1A2 LTR MaLR 1 374 0 259 236 45 22 chr5 34363652 34363741 -168721791 + MLT1K LTR MaLR 411 501 -87 2221 130 0 0 chr5 34363803 34364110 -168721422 - AluSx SINE Alu -5 307 1 592 311 135 27 chr5 34364953 34365249 -168720283 - L2 LINE L2 -1228 2086 1759 499 293 24 37 chr5 34365606 34365770 -168719762 + MIR SINE MIR 5 166 -96 345 326 154 39 chr5 34365845 34366078 -168719454 + L2 LINE L2 3012 3271 -1 616 289 6 0 chr5 34367855 34368028 -168717504 + MER5B DNA MER1_type 1 174 -4 304 262 215 20 chr5 34368091 34368240 -168717292 - MER5B DNA MER1_type 0 178 1 720 151 87 0 chr5 34368412 34368584 -168716948 - MER53 DNA DNA 0 189 3 438 20 0 0 chr5 34370317 34370368 -168715164 + (CA)n Simple_repeat Simple_repeat 2 52 0 425 286 50 50 chr5 34370983 34371074 -168714458 - MIR3 SINE MIR -10 198 105 2182 131 3 0 chr5 34371074 34371380 -168714152 - AluSx SINE Alu -5 307 1 425 286 50 50 chr5 34371380 34371428 -168714104 - MIR3 SINE MIR -102 106 59 209 196 18 0 chr5 34372558 34372614 -168712918 + CT-rich Low_complexity Low_complexity 2 58 0 279 54 0 0 chr5 34373023 34373060 -168712472 + (CA)n Simple_repeat Simple_repeat 1 37 0 502 280 140 10 chr5 34374010 34374217 -168711315 + MIR SINE MIR 29 262 0 553 248 25 10 chr5 34374347 34374549 -168710983 - L1MC5 LINE L1 -37 7924 7720 592 235 75 5 chr5 34374551 34374738 -168710794 + MLT1H LTR MaLR 1 200 -349 228 327 159 9 chr5 34374751 34374864 -168710668 + MLT1H LTR MaLR 420 549 0 330 26 0 0 chr5 34375216 34375255 -168710277 + (CA)n Simple_repeat Simple_repeat 2 40 0 387 0 0 0 chr5 34375291 34375334 -168710198 + (GA)n Simple_repeat Simple_repeat 1 43 0 1679 135 19 61 chr5 34375396 34375708 -168709824 + AluJo SINE Alu 3 301 -11 486 145 14 29 chr5 34375714 34375852 -168709680 + GA-rich Low_complexity Low_complexity 1 136 0 2018 139 0 10 chr5 34376587 34376920 -168708612 - AluJb SINE Alu 0 312 1 666 214 19 0 chr5 34377142 34377296 -168708236 - MER103 DNA DNA -2 164 8 435 326 7 17 chr5 34377373 34377532 -168708000 - MIR3 SINE MIR -48 160 7 21 0 0 0 chr5 34377864 34377885 -168707647 + AT_rich Low_complexity Low_complexity 1 21 0 508 319 122 40 chr5 34377991 34378492 -168707040 + MLT1L LTR MaLR 1 542 -73 549 368 95 6 chr5 34379615 34379930 -168705602 + L3 LINE CR1 1046 1388 -189 1622 199 21 18 chr5 34379964 34380300 -168705232 + MER1B DNA MER1_type 1 337 0 267 293 195 35 chr5 34380309 34380483 -168705049 + L3 LINE CR1 1361 1562 -15 313 194 0 42 chr5 34380626 34380698 -168704834 + L2 LINE L2 3243 3311 -2 183 129 0 0 chr5 34381060 34381091 -168704441 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 5265 77 8 4 chr5 34381113 34381828 -168703704 - L1PA10 LINE L1 -1 6167 5450 234 192 0 0 chr5 34381828 34381880 -168703652 + CT-rich Low_complexity Low_complexity 2 53 0 1299 142 82 113 chr5 34382162 34382542 -168702990 + L1MA4A LINE L1 5932 6299 -4 209 253 211 11 chr5 34382752 34382847 -168702685 - MIR SINE MIR -120 142 29 329 288 50 43 chr5 34382861 34383000 -168702532 + MIR SINE MIR 104 243 -19 22 35 0 0 chr5 34384194 34384223 -168701309 + AT_rich Low_complexity Low_complexity 1 29 0 868 41 0 72 chr5 34384289 34384483 -168701049 + (TA)n Simple_repeat Simple_repeat 1 180 0 317 239 68 0 chr5 34385584 34385672 -168699860 + L1MA10 LINE L1 6241 6334 0 366 23 0 0 chr5 34387115 34387158 -168698374 + (TG)n Simple_repeat Simple_repeat 2 44 0 285 183 0 0 chr5 34387158 34387218 -168698314 + (TA)n Simple_repeat Simple_repeat 2 61 0 205 293 40 40 chr5 34389531 34389606 -168695926 + L3b LINE CR1 1393 1467 -116 2357 98 10 0 chr5 34390472 34390769 -168694763 - AluSx SINE Alu -12 300 1 1236 155 10 0 chr5 34390906 34391113 -168694419 + MER2 DNA MER2_type 2 210 -135 514 254 65 0 chr5 34393396 34393534 -168691998 - MIR SINE MIR -13 249 103 198 385 55 0 chr5 34393651 34393742 -168691790 - MIR SINE MIR -165 97 2 868 235 126 82 chr5 34394721 34395390 -168690142 + HAL1 LINE L1 8 705 -1802 281 232 50 61 chr5 34395533 34395632 -168689900 + MIR SINE MIR 92 189 -73 316 339 42 0 chr5 34395635 34395753 -168689779 - MIR SINE MIR -23 239 117 33 0 0 0 chr5 34396266 34396299 -168689233 + AT_rich Low_complexity Low_complexity 1 33 0 15755 75 8 1 chr5 34396301 34398755 -168686777 - L1PA7 LINE L1 -5 6149 3673 261 0 0 0 chr5 34398755 34398784 -168686748 + (TG)n Simple_repeat Simple_repeat 2 30 0 15755 75 8 1 chr5 34398784 34399220 -168686312 - L1PA7 LINE L1 -2481 3673 3242 189 242 0 0 chr5 34400028 34400061 -168685471 - L2 LINE L2 -21 3251 3219 745 166 0 43 chr5 34400287 34400426 -168685106 - FLAM_C SINE Alu 0 133 1 2285 97 3 3 chr5 34400584 34400895 -168684637 - AluSq SINE Alu -2 311 1 1386 199 3 43 chr5 34400896 34400955 -168684577 - AluJo SINE Alu -11 301 241 1692 186 24 12 chr5 34400955 34401294 -168684238 + MER61A LTR ERV1 1 343 0 1386 199 3 43 chr5 34401294 34401535 -168683997 - AluJo SINE Alu -71 241 13 2328 122 0 0 chr5 34402154 34402465 -168683067 - AluSq SINE Alu -2 311 1 257 349 0 0 chr5 34403165 34403228 -168682304 - L2 LINE L2 -24 3289 3227 27 29 0 0 chr5 34403432 34403466 -168682066 + AT_rich Low_complexity Low_complexity 1 34 0 420 232 66 31 chr5 34403814 34403997 -168681535 - L1ME2 LINE L1 -1 6163 5971 477 307 121 54 chr5 34404190 34404976 -168680556 - L2 LINE L2 -198 3074 2238 317 234 0 0 chr5 34404976 34405040 -168680492 + L1MC4 LINE L1 6640 6703 -1339 205 285 60 45 chr5 34405128 34405224 -168680308 - MER5B DNA MER1_type -78 100 7 1918 135 35 35 chr5 34405379 34405690 -168679842 - AluSx SINE Alu 0 312 2 229 175 53 0 chr5 34406123 34406180 -168679352 - LTR66 LTR ERVL -153 457 398 302 116 53 21 chr5 34406180 34406275 -168679257 + (TA)n Simple_repeat Simple_repeat 2 99 0 190 250 30 15 chr5 34406548 34406680 -168678852 + GA-rich Low_complexity Low_complexity 2 135 0 212 364 0 0 chr5 34407122 34407188 -168678344 - MIR3 SINE MIR -36 172 107 1341 118 55 9 chr5 34407212 34407432 -168678100 + MER30 DNA MER1_type 1 230 0 193 40 0 0 chr5 34407741 34407766 -168677766 + (TTTG)n Simple_repeat Simple_repeat 2 104 0 2198 82 0 7 chr5 34407766 34408048 -168677484 - AluSc SINE Alu -29 280 1 189 397 43 26 chr5 34408094 34408210 -168677322 - L2 LINE L2 -17 3255 3138 215 309 55 88 chr5 34408385 34408602 -168676930 + MIR SINE MIR 46 255 -7 * 933 213 62 62 chr5 34408560 34408800 -168676732 - MIR SINE MIR 0 262 23 21 57 0 0 chr5 34409057 34409092 -168676440 + AT_rich Low_complexity Low_complexity 1 35 0 320 197 142 126 chr5 34409661 34409844 -168675688 - L1MC4 LINE L1 0 8042 7857 1009 272 39 27 chr5 34409880 34410218 -168675314 + LTR16A LTR ERVL 31 372 -78 26 64 0 0 chr5 34410268 34410315 -168675217 + AT_rich Low_complexity Low_complexity 1 47 0 963 220 75 20 chr5 34410315 34410512 -168675020 - L1MC4 LINE L1 -249 7793 7573 216 0 0 0 chr5 34410512 34410536 -168674996 + (CTTTG)n Simple_repeat Simple_repeat 2 25 0 963 220 75 20 chr5 34410536 34410633 -168674899 - L1MC4 LINE L1 -469 7573 7483 230 301 0 14 chr5 34411009 34411082 -168674450 - HsTC2 DNA Tc2 -1816 82 11 636 299 16 16 chr5 34411085 34411269 -168674263 - MIR SINE MIR -31 231 48 2019 124 26 100 chr5 34412054 34412474 -168673058 + MLT1B LTR MaLR 1 389 -1 795 250 88 37 chr5 34413469 34413741 -168671791 + L2 LINE L2 3028 3313 0 475 261 33 56 chr5 34413739 34413919 -168671613 - L2 LINE L2 -4 3309 3134 * 25 0 0 0 chr5 34415306 34415331 -168670201 + AT_rich Low_complexity Low_complexity 1 25 0 354 326 29 22 chr5 34416499 34416637 -168668895 - L2 LINE L2 0 3313 3175 1080 116 9 111 chr5 34416664 34416693 -168668839 - THE1B LTR MaLR 0 364 334 7178 35 1 33 chr5 34416693 34417845 -168667687 + L1PA4 LINE L1 5031 6152 -3 1080 116 9 111 chr5 34417845 34418031 -168667501 - THE1B LTR MaLR -30 334 171 225 0 0 0 chr5 34418127 34418152 -168667380 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 959 332 62 28 chr5 34418223 34418825 -168666707 - L2 LINE L2 -516 2798 2177 743 313 60 17 chr5 34418911 34419626 -168665906 + L1MEc LINE L1 1075 1820 -4576 788 167 0 0 chr5 34419836 34419962 -168665570 - FLAM_C SINE Alu -3 130 5 766 256 76 16 chr5 34420135 34420582 -168664950 + L1MEc LINE L1 2178 2612 -3603 546 143 9 38 chr5 34420606 34420711 -168664821 + MSTC LTR MaLR 1 102 -326 713 301 152 17 chr5 34420724 34421126 -168664406 + LTR33 LTR ERVL 14 469 -52 284 308 0 0 chr5 34421178 34421285 -168664247 + L1MEc LINE L1 3282 3388 -2827 329 285 40 46 chr5 34421289 34421440 -168664092 + L1MEc LINE L1 3801 3950 -2265 746 125 8 8 chr5 34421582 34421702 -168663830 - AluSg/x SINE Alu -1 309 190 1450 96 0 11 chr5 34421702 34421890 -168663642 + AluSx SINE Alu 22 207 -105 921 114 0 0 chr5 34423368 34423500 -168662032 + AluSc SINE Alu 170 301 -8 214 235 49 62 chr5 34423970 34424051 -168661481 - L2 LINE L2 0 3313 3234 371 328 76 0 chr5 34424158 34424289 -168661243 + MIR3 SINE MIR 5 145 -63 263 300 127 64 chr5 34424442 34424662 -168660870 + L2 LINE L2 2953 3186 -86 25 75 0 0 chr5 34426494 34426547 -168658985 + AT_rich Low_complexity Low_complexity 1 53 0 481 171 38 9 chr5 34426548 34426653 -168658879 + L1MD3 LINE L1 7873 7980 -15 2126 83 7 4 chr5 34427048 34427324 -168658208 + AluSq SINE Alu 21 297 -16 604 73 85 0 chr5 34427435 34427599 -168657933 + (TA)n Simple_repeat Simple_repeat 1 178 0 315 243 81 62 chr5 34427815 34428025 -168657507 - LTR33 LTR ERVL -6 515 302 257 270 40 61 chr5 34428107 34428255 -168657277 - LTR33 LTR ERVL -376 145 1 6929 137 45 6 chr5 34428506 34429691 -168655841 - Tigger3b DNA MER2_type 0 1231 1 383 350 49 16 chr5 34432067 34432250 -168653282 + MIR SINE MIR 19 207 -55 613 108 0 43 chr5 34432276 34432369 -168653163 - 5S rRNA rRNA -32 89 1 1436 33 22 0 chr5 34432889 34433071 -168652461 - L1P LINE L1 -3171 2975 2790 9720 27 5 0 chr5 34433071 34434991 -168650541 + L1PA3 LINE L1 4233 6155 0 32 26 0 0 chr5 34435357 34435396 -168650136 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr5 34436843 34436864 -168648668 + AT_rich Low_complexity Low_complexity 1 21 0 710 274 111 0 chr5 34436986 34437194 -168648338 + Charlie2 DNA MER1_type 92 322 -2460 2387 206 70 65 chr5 34437199 34438088 -168647444 + Charlie2 DNA MER1_type 1856 2752 -110 2131 124 0 0 chr5 34438088 34438394 -168647138 - AluSc SINE Alu -1 308 3 2387 206 70 65 chr5 34438394 34438497 -168647035 + Charlie2 DNA MER1_type 2752 2853 -9 275 234 87 85 chr5 34438798 34438993 -168646539 + MIR SINE MIR 2 191 -67 368 238 0 48 chr5 34439619 34439724 -168645808 - L2 LINE L2 -69 3244 3145 591 318 76 38 chr5 34439767 34439886 -168645646 - L2 LINE L2 -338 2976 2863 1388 190 129 41 chr5 34439886 34440117 -168645415 + MSTD LTR MaLR 1 277 -119 2246 101 0 0 chr5 34440117 34440405 -168645127 + AluSg SINE Alu 9 296 -14 1388 190 129 41 chr5 34440405 34440537 -168644995 + MSTD LTR MaLR 277 396 0 591 318 76 38 chr5 34440537 34440706 -168644826 - L2 LINE L2 -451 2863 2677 206 192 19 0 chr5 34442685 34442737 -168642795 + (TA)n Simple_repeat Simple_repeat 1 53 0 399 282 196 55 chr5 34442738 34443142 -168642390 - L1MC4a LINE L1 -1372 6436 5976 1031 172 104 5 chr5 34443161 34443382 -168642150 - L1MD3 LINE L1 -23 7972 7730 567 258 20 24 chr5 34443386 34443634 -168641898 - L1MC4a LINE L1 -1830 5978 5732 1977 198 33 0 chr5 34443849 34444268 -168641264 - Charlie4a DNA MER1_type -75 433 1 231 36 0 0 chr5 34444381 34444409 -168641123 + (TC)n Simple_repeat Simple_repeat 1 28 0 272 168 84 11 chr5 34444409 34444504 -168641028 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 254 284 27 2 chr5 34444547 34444622 -168640910 - MIR SINE MIR -95 113 34 1041 238 110 74 chr5 34445914 34446440 -168639092 + MLT1H LTR MaLR 1 545 -4 8955 212 64 33 chr5 34447341 34449666 -168635866 + L1MDa LINE L1 1 2397 -4143 1985 188 65 7 chr5 34449644 34449785 -168635747 + L1MD1 LINE L1 6174 6305 -331 * 279 0 0 0 chr5 34449785 34449816 -168635716 + (TG)n Simple_repeat Simple_repeat 2 32 0 1985 188 65 7 chr5 34449816 34450088 -168635444 + L1MD1 LINE L1 6305 6611 -25 32 26 0 0 chr5 34450088 34450127 -168635405 + AT_rich Low_complexity Low_complexity 1 39 0 206 259 0 37 chr5 34451224 34451278 -168634254 - MER5B DNA MER1_type -1 177 126 645 294 0 11 chr5 34451278 34451458 -168634074 + MIR SINE MIR 82 259 -3 4795 127 43 17 chr5 34451542 34452154 -168633378 + LTR39 LTR ERV1 1 638 -145 1514 67 91 207 chr5 34452154 34452604 -168632928 - MER48 LTR ERV1 0 398 1 4795 127 43 17 chr5 34452604 34452754 -168632778 + LTR39 LTR ERV1 638 783 0 22 0 0 0 chr5 34452847 34452869 -168632663 + AT_rich Low_complexity Low_complexity 1 22 0 278 250 16 0 chr5 34454027 34454091 -168631441 + MIR3 SINE MIR 92 156 -52 290 300 119 0 chr5 34454652 34454777 -168630755 - MIR SINE MIR -69 139 12 2076 141 3 3 chr5 34455578 34455890 -168629642 - AluSx SINE Alu 0 312 1 198 0 0 0 chr5 34455898 34455920 -168629612 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1690 176 24 14 chr5 34456040 34456336 -168629196 + AluJb SINE Alu 1 299 -13 980 283 80 6 chr5 34456640 34456965 -168628567 - MLT1G1 LTR MaLR -186 371 67 241 286 80 9 chr5 34456980 34457092 -168628440 - L1ME LINE L1 -480 5641 5522 550 299 112 8 chr5 34457093 34457462 -168628070 - L2 LINE L2 -33 3280 2803 1158 284 123 22 chr5 34458914 34459376 -168626156 + L3 LINE CR1 625 1133 -444 612 245 80 6 chr5 34459394 34459557 -168625975 + MER5B DNA MER1_type 1 175 -3 2325 101 3 0 chr5 34459579 34459886 -168625646 - AluSp SINE Alu -5 308 1 375 322 62 62 chr5 34459938 34460323 -168625209 + L2 LINE L2 2564 2948 -366 298 344 209 0 chr5 34460688 34460932 -168624600 + L3 LINE CR1 1272 1566 -11 231 313 0 0 chr5 34462009 34462073 -168623459 + L2 LINE L2 3209 3272 0 1877 145 10 17 chr5 34462255 34462552 -168622980 + AluSx SINE Alu 1 295 -17 204 182 0 0 chr5 34464000 34464044 -168621488 + (TA)n Simple_repeat Simple_repeat 2 45 0 455 293 144 10 chr5 34464403 34464611 -168620921 - LTR33 LTR ERVL -285 236 1 292 337 0 10 chr5 34464623 34464721 -168620811 + MIR SINE MIR 160 256 -6 204 305 42 32 chr5 34464735 34464830 -168620702 + MIR3 SINE MIR 109 204 -4 2434 68 0 0 chr5 34465310 34465605 -168619927 - AluY SINE Alu -16 295 1 599 251 115 21 chr5 34465822 34466065 -168619467 + L2 LINE L2 2971 3236 -77 705 328 72 25 chr5 34466178 34466693 -168618839 - MARNA DNA Mariner -18 568 30 680 206 74 37 chr5 34467377 34467452 -168618080 + MLT1D LTR MaLR 1 72 -433 617 257 44 113 chr5 34467452 34467884 -168617648 + MER93a LTR ERV1 1 402 0 680 206 74 37 chr5 34467884 34467997 -168617535 + MLT1D LTR MaLR 72 196 -309 1866 159 83 3 chr5 34468024 34468598 -168616934 - L1M4 LINE L1 -510 5674 4963 * 1988 227 117 30 chr5 34468596 34469481 -168616051 + L1MD2 LINE L1 5184 6192 -27 238 378 142 0 chr5 34470191 34470318 -168615214 - MIR3 SINE MIR -28 180 36 1009 186 6 0 chr5 34470330 34470507 -168615025 + MER45A DNA AcHobo 1 178 0 263 344 42 0 chr5 34471181 34471277 -168614255 + MIR SINE MIR 53 152 -110 226 189 0 0 chr5 34471397 34471434 -168614098 + THE1B LTR MaLR 1 37 -327 1149 266 30 76 chr5 34471542 34472237 -168613295 + L1ME3A LINE L1 5281 5943 -227 234 277 69 79 chr5 34472722 34472924 -168612608 + L1ME3A LINE L1 5968 6167 -3 200 158 26 0 chr5 34472931 34472969 -168612563 - MIR SINE MIR -127 135 97 193 200 25 0 chr5 34473717 34473757 -168611775 - L2 LINE L2 -2 3311 3271 517 279 248 12 chr5 34474595 34475049 -168610483 + L2 LINE L2 2621 3179 -134 236 158 53 0 chr5 34475050 34475126 -168610406 + (TA)n Simple_repeat Simple_repeat 1 80 0 562 250 25 25 chr5 34475127 34475287 -168610245 + L2 LINE L2 3154 3313 0 2024 136 0 10 chr5 34476433 34476766 -168608766 - AluJb SINE Alu 0 312 1 710 214 19 0 chr5 34476988 34477142 -168608390 - MER103 DNA DNA -2 164 8 431 326 7 17 chr5 34477219 34477378 -168608154 - MIR3 SINE MIR -48 160 7 21 0 0 0 chr5 34477709 34477730 -168607802 + AT_rich Low_complexity Low_complexity 1 21 0 662 319 122 40 chr5 34477836 34478337 -168607195 + MLT1L LTR MaLR 1 542 -73 550 368 95 6 chr5 34479459 34479774 -168605758 + L3 LINE CR1 1046 1388 -189 1608 199 21 18 chr5 34479808 34480144 -168605388 + MER1B DNA MER1_type 1 337 0 265 293 195 35 chr5 34480153 34480327 -168605205 + L3 LINE CR1 1361 1562 -15 308 194 0 42 chr5 34480470 34480542 -168604990 + L2 LINE L2 3243 3311 -2 183 129 0 0 chr5 34480904 34480935 -168604597 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 5265 77 8 4 chr5 34480957 34481672 -168603860 - L1PA10 LINE L1 -1 6167 5450 234 192 0 0 chr5 34481672 34481724 -168603808 + CT-rich Low_complexity Low_complexity 2 53 0 1405 146 81 112 chr5 34482002 34482386 -168603146 + L1MA4A LINE L1 5928 6299 -4 210 253 211 11 chr5 34482596 34482691 -168602841 - MIR SINE MIR -120 142 29 337 288 50 43 chr5 34482705 34482844 -168602688 + MIR SINE MIR 104 243 -19 22 35 0 0 chr5 34484038 34484067 -168601465 + AT_rich Low_complexity Low_complexity 1 29 0 839 56 62 0 chr5 34484127 34484287 -168601245 + (TA)n Simple_repeat Simple_repeat 1 170 0 341 239 68 0 chr5 34485388 34485476 -168600056 + L1MA10 LINE L1 6241 6334 0 366 23 0 0 chr5 34486919 34486962 -168598570 + (TG)n Simple_repeat Simple_repeat 2 44 0 303 177 0 0 chr5 34486962 34487024 -168598508 + (TA)n Simple_repeat Simple_repeat 2 63 0 206 293 40 40 chr5 34489337 34489412 -168596120 + L3b LINE CR1 1393 1467 -116 2331 98 10 0 chr5 34490278 34490575 -168594957 - AluSx SINE Alu -12 300 1 1300 202 81 17 chr5 34490712 34491009 -168594523 + MER2 DNA MER2_type 2 317 -28 525 246 65 0 chr5 34493201 34493339 -168592193 - MIR SINE MIR -13 249 103 231 292 0 0 chr5 34493386 34493451 -168592081 - L1 LINE L1 -1329 4817 4753 199 385 55 0 chr5 34493456 34493547 -168591985 - MIR SINE MIR -165 97 2 1056 233 126 82 chr5 34494526 34495195 -168590337 + HAL1 LINE L1 8 705 -1802 277 232 50 61 chr5 34495338 34495437 -168590095 + MIR SINE MIR 92 189 -73 315 339 42 0 chr5 34495440 34495558 -168589974 - MIR SINE MIR -23 239 117 33 0 0 0 chr5 34496071 34496104 -168589428 + AT_rich Low_complexity Low_complexity 1 33 0 4884 42 2 0 chr5 34496106 34496701 -168588831 - L1PA7 LINE L1 -5 6149 5554 10611 88 0 2 chr5 34496701 34498164 -168587368 + L1P LINE L1 3173 4632 -1514 304 264 253 28 chr5 34499234 34499313 -168586219 - MIR SINE MIR -19 243 183 459 52 0 0 chr5 34499313 34499371 -168586161 + (TAG)n Simple_repeat Simple_repeat 1 58 0 304 264 253 28 chr5 34499371 34499473 -168586059 - MIR SINE MIR -79 183 21 816 298 138 62 chr5 34499679 34499883 -168585649 - L3 LINE CR1 -124 1453 1266 2278 95 7 0 chr5 34499883 34500179 -168585353 - AluSg SINE Alu -10 300 3 816 298 138 62 chr5 34500179 34500619 -168584913 - L3 LINE CR1 -311 1266 760 344 299 31 31 chr5 34500627 34500724 -168584808 + L1PA13 LINE L1 203 299 -6488 5139 181 43 8 chr5 34500726 34502446 -168583086 + L1PA16 LINE L1 4377 6161 -5 39699 80 5 2 chr5 34502581 34508714 -168576818 - L1PA6 LINE L1 0 6154 1 765 265 5 34 chr5 34508780 34508984 -168576548 + MLT1I LTR MaLR 195 392 -17 375 23 0 0 chr5 34509179 34509223 -168576309 + (CA)n Simple_repeat Simple_repeat 2 45 0 2892 13 0 0 chr5 34509885 34510203 -168575329 - AluYb8 SINE Alu 0 318 1 22 35 0 0 chr5 34510822 34510851 -168574681 + AT_rich Low_complexity Low_complexity 1 29 0 231 167 0 0 chr5 34510923 34510965 -168574567 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1650 109 0 18 chr5 34510990 34511219 -168574313 + AluSq SINE Alu 86 310 -3 1500 207 0 14 chr5 34511219 34511499 -168574033 - AluJb SINE Alu -36 276 1 25 31 0 0 chr5 34511538 34511570 -168573962 + AT_rich Low_complexity Low_complexity 1 32 0 696 236 14 88 chr5 34512323 34512448 -168573084 + L1MC5 LINE L1 7479 7612 -349 863 224 0 0 chr5 34512448 34512600 -168572932 + FRAM SINE Alu 1 152 -14 696 236 14 88 chr5 34512600 34512894 -168572638 + L1MC5 LINE L1 7612 7867 -94 690 245 14 98 chr5 34513297 34513363 -168572169 - MIR SINE MIR 0 262 192 2048 137 51 20 chr5 34513363 34513713 -168571819 - THE1B LTR MaLR -3 361 1 11409 78 28 21 chr5 34513713 34513808 -168571724 - THE1B-int LTR MaLR 0 1580 1487 2246 122 0 7 chr5 34513808 34514112 -168571420 + AluSx SINE Alu 1 302 -10 11409 78 28 21 chr5 34514112 34515585 -168569947 - THE1B-int LTR MaLR -93 1487 1 1951 147 69 20 chr5 34515585 34515932 -168569600 - THE1B LTR MaLR 0 364 1 690 245 14 98 chr5 34515932 34516149 -168569383 - MIR SINE MIR -67 195 1 412 254 0 36 chr5 34516886 34516996 -168568536 + MIR SINE MIR 34 139 -69 541 163 135 0 chr5 34517831 34517972 -168567560 - MER53 DNA DNA -27 162 3 669 180 129 14 chr5 34517982 34518121 -168567411 - FRAM SINE Alu -11 155 1 186 43 0 0 chr5 34518234 34518257 -168567275 + (CA)n Simple_repeat Simple_repeat 1 23 0 256 229 145 37 chr5 34519352 34519566 -168565966 + L1MC5 LINE L1 7501 7737 -224 537 242 47 0 chr5 34519687 34519708 -168565824 + MIR SINE MIR 128 147 -115 2775 123 9 20 chr5 34519708 34520147 -168565385 + Tigger2a DNA MER2_type 1 434 0 537 242 47 0 chr5 34520147 34520253 -168565279 + MIR SINE MIR 147 261 -1 303 348 33 54 chr5 34520272 34520456 -168565076 - MIR3 SINE MIR -23 185 6 357 179 152 83 chr5 34520614 34520759 -168564773 + L1ME2 LINE L1 5928 6082 -82 13099 118 83 10 chr5 34520759 34520875 -168564657 - Tigger1 DNA MER2_type 0 2418 2312 2365 100 0 0 chr5 34520875 34521174 -168564358 + AluSp SINE Alu 2 300 -13 13099 118 83 10 chr5 34521174 34521266 -168564266 - Tigger1 DNA MER2_type -106 2312 2228 2253 104 3 3 chr5 34521266 34521563 -168563969 + AluSx SINE Alu 1 297 -15 13099 118 83 10 chr5 34521563 34523585 -168561947 - Tigger1 DNA MER2_type -190 2228 24 361 209 0 0 chr5 34523591 34523677 -168561855 + L1ME2 LINE L1 6079 6164 0 190 279 23 0 chr5 34523794 34523837 -168561695 - MIR SINE MIR -135 73 30 270 280 280 0 chr5 34525100 34525225 -168560307 - MIR SINE MIR -78 184 25 2316 108 0 0 chr5 34525408 34525705 -168559827 + AluSg SINE Alu 1 297 -13 1067 272 32 66 chr5 34525734 34526263 -168559269 + LTR33 LTR ERVL 11 521 0 298 309 136 75 chr5 34526331 34526707 -168558825 - L2 LINE L2 -3 3310 2912 2101 120 7 0 chr5 34526756 34527047 -168558485 - AluSq SINE Alu -20 293 1 1838 146 68 7 chr5 34527334 34527628 -168557904 + AluSx SINE Alu 1 312 0 498 255 92 9 chr5 34527763 34527937 -168557595 + MIR SINE MIR 19 202 -60 360 259 18 9 chr5 34527964 34528076 -168557456 - MLT1L LTR MaLR -29 586 474 321 275 110 18 chr5 34528286 34528395 -168557137 + L2 LINE L2 3190 3308 -5 355 264 152 22 chr5 34528454 34528632 -168556900 - MER58C DNA MER1_type -13 202 2 254 250 52 0 chr5 34529025 34529121 -168556411 + MER103 DNA DNA 11 111 -55 205 330 20 50 chr5 34529518 34529618 -168555914 - MIR SINE MIR -93 115 19 350 327 71 39 chr5 34529693 34529848 -168555684 + MIR SINE MIR 20 177 -76 2490 62 0 7 chr5 34529864 34530168 -168555364 + AluY SINE Alu 3 304 -7 422 296 15 22 chr5 34530264 34530399 -168555133 - MIR3 SINE MIR -64 144 11 993 273 61 30 chr5 34530988 34531324 -168554208 + MLT1I LTR MaLR 3 354 -55 3317 77 9 7 chr5 34531324 34531767 -168553765 - MLT2A1 LTR ERVL 0 444 1 993 273 61 30 chr5 34531767 34531825 -168553707 + MLT1I LTR MaLR 354 409 0 348 248 191 13 chr5 34531826 34531983 -168553549 + MIR SINE MIR 78 262 0 1887 130 0 0 chr5 34532616 34532878 -168552654 + AluSx SINE Alu 32 293 -19 231 235 20 0 chr5 34533278 34533329 -168552203 + L2 LINE L2 3008 3059 -213 2503 233 113 19 chr5 34534584 34535633 -168549899 - Charlie2a DNA MER1_type 0 2862 1715 1055 195 183 12 chr5 34536234 34536485 -168549047 - AluJo SINE Alu -8 294 1 249 33 0 0 chr5 34536542 34536572 -168548960 + (TG)n Simple_repeat Simple_repeat 2 31 0 1596 200 19 0 chr5 34536575 34536845 -168548687 - AluJo SINE Alu -37 275 1 287 216 125 34 chr5 34536864 34536952 -168548580 - L2 LINE L2 -4 3309 3214 1332 257 157 8 chr5 34536957 34537447 -168548085 - L2 LINE L2 -889 2425 1863 1817 212 37 0 chr5 34537568 34537950 -168547582 - MSTD LTR MaLR 0 396 1 1115 226 81 53 chr5 34537956 34538386 -168547146 + MER39 LTR ERV1 262 703 -4 1484 285 86 23 chr5 34538394 34538920 -168546612 - L2 LINE L2 -1458 1856 1298 1780 141 67 23 chr5 34538921 34539280 -168546252 - MSTA LTR MaLR 0 375 1 3833 179 32 6 chr5 34539280 34539993 -168545539 - MSTA-int LTR MaLR 0 1651 920 2581 152 9 0 chr5 34539993 34540435 -168545097 - MSTA-int LTR MaLR -1205 446 1 2568 107 54 10 chr5 34540435 34540845 -168544687 - MSTA LTR MaLR 0 428 1 462 354 29 17 chr5 34540846 34541021 -168544511 - L2 LINE L2 -2014 1300 1124 500 265 27 45 chr5 34541265 34541364 -168544168 + L1ME1 LINE L1 5942 6041 -125 2174 168 51 19 chr5 34541364 34541775 -168543757 - MSTB LTR MaLR 0 426 3 500 265 27 45 chr5 34541775 34541898 -168543634 + L1ME1 LINE L1 6041 6160 -6 525 71 0 0 chr5 34541955 34542025 -168543507 + (TA)n Simple_repeat Simple_repeat 1 70 0 2237 118 0 3 chr5 34542059 34542439 -168543093 + AluSg SINE Alu 4 382 0 451 228 31 39 chr5 34542479 34542606 -168542926 - Charlie2 DNA MER1_type -2522 340 215 847 92 171 6 chr5 34542622 34542786 -168542746 - L1MA5 LINE L1 -2 6298 6108 2024 160 3 3 chr5 34542786 34543099 -168542433 + AluSq SINE Alu 1 313 0 35571 92 8 8 chr5 34543100 34546786 -168538746 + L1PA6 LINE L1 6 3684 -2470 279 0 0 0 chr5 34546786 34546817 -168538715 + (CA)n Simple_repeat Simple_repeat 2 32 0 35571 92 8 8 chr5 34546817 34549281 -168536251 + L1PA6 LINE L1 3684 6148 -6 1416 130 40 0 chr5 34549291 34549544 -168535988 - L1MA5 LINE L1 -175 6125 5863 237 319 50 39 chr5 34549544 34549726 -168535806 - Charlie2 DNA MER1_type -2572 210 27 284 192 0 0 chr5 34550000 34550052 -168535480 - MER66A LTR ERV1 -140 338 287 216 362 0 64 chr5 34550405 34550499 -168535033 - MIR SINE MIR -76 132 45 2653 137 70 2 chr5 34550499 34550953 -168534579 - MER31A LTR ERV1 0 485 1 255 210 76 1 chr5 34553393 34553521 -168532011 + MLT1I LTR MaLR 1 142 -267 235 324 98 17 chr5 34553689 34553862 -168531670 + MLT1H LTR MaLR 347 533 -16 346 338 56 0 chr5 34553892 34554034 -168531498 + MIR SINE MIR 102 251 -11 318 26 0 0 chr5 34554079 34554118 -168531414 + (TG)n Simple_repeat Simple_repeat 1 39 0 198 0 0 0 chr5 34554117 34554139 -168531393 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 601 258 93 31 chr5 34554979 34555143 -168530389 + MIR SINE MIR 56 235 -27 1834 118 38 79 chr5 34555143 34555534 -168529998 + THE1C LTR MaLR 1 375 0 601 258 93 31 chr5 34555534 34555563 -168529969 + MIR SINE MIR 235 261 -1 28 61 0 0 chr5 34555564 34555613 -168529919 + AT_rich Low_complexity Low_complexity 1 49 0 2372 85 0 25 chr5 34556807 34557126 -168528406 - AluY SINE Alu 0 311 1 1050 238 5 14 chr5 34557742 34557965 -168527567 + MER58A DNA MER1_type 4 224 0 228 214 29 97 chr5 34557973 34558076 -168527456 + HAL1 LINE L1 2058 2153 -354 434 175 0 0 chr5 34558504 34558584 -168526948 + MLT1A1 LTR MaLR 1 80 -285 6505 68 8 2 chr5 34558584 34559678 -168525854 + L1PA8A LINE L1 5026 6124 -7 531 69 0 0 chr5 34559683 34559755 -168525777 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 1129 167 6 130 chr5 34559755 34560078 -168525454 + MLT1A1 LTR MaLR 83 365 0 238 235 0 0 chr5 34560157 34560208 -168525324 - MER5A DNA MER1_type -138 51 1 189 341 123 43 chr5 34560336 34560474 -168525058 + MIR SINE MIR 49 197 -65 23 0 0 0 chr5 34560502 34560525 -168525007 + AT_rich Low_complexity Low_complexity 1 23 0 1352 210 37 23 chr5 34561030 34561383 -168524149 + THE1C LTR MaLR 1 358 -17 1474 244 5 5 chr5 34561935 34562333 -168523199 + L1M4 LINE L1 2459 2856 -3290 193 333 69 0 chr5 34562443 34562515 -168523017 - L2 LINE L2 -95 3177 3101 1771 199 10 0 chr5 34562869 34563170 -168522362 - AluJb SINE Alu -8 304 1 225 228 211 0 chr5 34563224 34563281 -168522251 + L2 LINE L2 3238 3306 -7 221 287 17 43 chr5 34563835 34563950 -168521582 + MIR3 SINE MIR 95 206 -2 285 121 133 60 chr5 34564770 34564853 -168520679 - MER103 DNA DNA -19 147 59 1811 176 0 0 chr5 34565182 34565460 -168520072 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr5 34565465 34565488 -168520044 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2193 140 7 0 chr5 34565626 34565933 -168519599 + AluSx SINE Alu 1 309 -3 981 206 37 19 chr5 34566529 34566743 -168518789 - MER20 DNA MER1_type -1 218 1 1601 153 52 55 chr5 34566820 34567185 -168518347 + THE1B LTR MaLR 1 364 0 204 347 73 27 chr5 34567462 34567612 -168517920 - MIR3 SINE MIR -25 183 27 1655 187 3 11 chr5 34569030 34569340 -168516192 - AluJo SINE Alu 0 309 2 303 240 53 13 chr5 34569344 34569419 -168516113 - L2 LINE L2 -16 3297 3220 2521 91 0 0 chr5 34569574 34569883 -168515649 + AluSg SINE Alu 1 309 -1 251 239 15 0 chr5 34569983 34570050 -168515482 + L1ME4a LINE L1 5969 6036 -85 1177 128 66 0 chr5 34570098 34570309 -168515223 - Tigger7 DNA MER2_type -1 2490 2266 * 1184 240 39 0 chr5 34570305 34570563 -168514969 - Tigger7 DNA MER2_type -2219 268 1 744 226 24 0 chr5 34572254 34572418 -168513114 + MER58A DNA MER1_type 49 216 -8 1291 117 0 0 chr5 34573150 34573330 -168512202 - AluSp SINE Alu -1 312 133 637 263 129 0 chr5 34573421 34573615 -168511917 + MIR SINE MIR 19 237 -25 1071 149 0 0 chr5 34573669 34573844 -168511688 + MER58B DNA MER1_type 167 341 0 2366 79 0 10 chr5 34574217 34574521 -168511011 - AluY SINE Alu -8 303 3 460 61 0 15 chr5 34574537 34574603 -168510929 - L1PA16 LINE L1 -10 6156 6092 191 243 95 27 chr5 34576439 34576513 -168509019 - MIR SINE MIR -68 194 116 226 325 86 68 chr5 34577406 34577569 -168507963 + MIR3 SINE MIR 19 184 -24 336 287 127 27 chr5 34577723 34577873 -168507659 - MIR3 SINE MIR -14 194 30 317 58 69 23 chr5 34578124 34578211 -168507321 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 284 284 231 53 chr5 34578398 34578701 -168506831 + MLT1K LTR MaLR 115 471 -117 1927 132 10 27 chr5 34578784 34579079 -168506453 + AluSx SINE Alu 1 290 -22 5510 130 12 5 chr5 34579306 34580728 -168504804 - L1PA15 LINE L1 -6 6159 4734 3855 197 16 14 chr5 34580728 34582005 -168503527 - L1PA12 LINE L1 -3963 3621 2321 317 325 58 25 chr5 34583010 34583254 -168502278 - L1PA12 LINE L1 -6595 990 1 2583 132 5 0 chr5 34583504 34583952 -168501580 - L1P LINE L1 -1013 5133 4684 209 108 27 0 chr5 34583972 34584009 -168501523 + GA-rich Low_complexity Low_complexity 2 39 0 2389 90 0 0 chr5 34584020 34584319 -168501213 + AluY SINE Alu 1 299 -12 5813 82 7 27 chr5 34584322 34585204 -168500328 + L1PA10 LINE L1 5305 6168 0 414 273 95 24 chr5 34585259 34585484 -168500048 + MLT1J LTR MaLR 1 237 -275 914 228 56 19 chr5 34585545 34585760 -168499772 + MER58A DNA MER1_type 2 224 0 1159 232 55 27 chr5 34586188 34586634 -168498898 + MLT2B1 LTR ERVL 1 495 -20 295 121 35 0 chr5 34586664 34586722 -168498810 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 1001 209 23 27 chr5 34587077 34587297 -168498235 + MER20 DNA MER1_type 1 219 0 2204 178 15 10 chr5 34587636 34588030 -168497502 - MSTD LTR MaLR 0 396 1 266 239 100 31 chr5 34588158 34588288 -168497244 - MIR SINE MIR -4 258 120 532 264 50 13 chr5 34588973 34589132 -168496400 + MER45A DNA AcHobo 6 170 -8 775 299 96 15 chr5 34589135 34589616 -168495916 - ERVL LTR ERVL -426 5338 4819 678 167 44 0 chr5 34589763 34589915 -168495617 + FLAM_C SINE Alu 1 157 0 1945 120 70 22 chr5 34589942 34590300 -168495232 + THE1C LTR MaLR 1 375 0 4136 47 10 2 chr5 34590571 34591231 -168494301 - L1PA5 LINE L1 -650 5504 4841 5626 31 0 0 chr5 34591231 34591872 -168493660 + L1PA5 LINE L1 5493 6146 -8 239 246 191 55 chr5 34592377 34592487 -168493045 - L2 LINE L2 -10 3303 3179 1441 175 0 35 chr5 34592515 34592772 -168492760 + AluJo SINE Alu 48 295 -17 1123 187 0 11 chr5 34592788 34592975 -168492557 + AluJo SINE Alu 118 302 -10 225 0 0 0 chr5 34593014 34593025 -168492507 + (CA)n Simple_repeat Simple_repeat 1 36 0 225 0 0 0 chr5 34593025 34593050 -168492482 + (CA)n Simple_repeat Simple_repeat 2 26 0 281 361 58 5 chr5 34593211 34593419 -168492113 - ERVL LTR ERVL -560 5204 4986 328 287 11 0 chr5 34593466 34593553 -168491979 + L1MC4 LINE L1 6616 6703 -1339 1139 164 250 27 chr5 34593650 34594128 -168491404 - LTR29 LTR ERV1 0 607 1 198 354 88 0 chr5 34594394 34594507 -168491025 - L2 LINE L2 -549 2765 2643 323 281 116 49 chr5 34595711 34595875 -168489657 - MIR3 SINE MIR 0 208 34 198 0 0 0 chr5 34596724 34596746 -168488786 + (T)n Simple_repeat Simple_repeat 1 22 0 548 232 40 73 chr5 34596865 34596946 -168488586 - MIR SINE MIR -1 261 179 1805 65 119 8 chr5 34596946 34597207 -168488325 - AluSc SINE Alu -19 290 1 548 232 40 73 chr5 34597207 34597302 -168488230 - MIR SINE MIR -83 179 91 264 288 92 65 chr5 34597551 34597704 -168487828 + MIR3 SINE MIR 16 172 -36 480 35 0 0 chr5 34597707 34597765 -168487767 + (TC)n Simple_repeat Simple_repeat 1 58 0 2476 47 0 22 chr5 34597881 34598199 -168487333 - AluY SINE Alu 0 311 1 25 31 0 0 chr5 34598350 34598382 -168487150 + AT_rich Low_complexity Low_complexity 1 32 0 2053 137 56 22 chr5 34598418 34598827 -168486705 + L1MB8 LINE L1 5740 6162 -16 21 57 0 0 chr5 34599613 34599648 -168485884 + AT_rich Low_complexity Low_complexity 1 35 0 614 191 16 32 chr5 34601436 34601562 -168483970 + FAM SINE Alu 42 165 -20 1981 149 0 0 chr5 34601646 34601951 -168483581 - AluSx SINE Alu 0 305 1 258 192 0 0 chr5 34603711 34603763 -168481769 + (TA)n Simple_repeat Simple_repeat 2 53 0 2638 45 0 10 chr5 34603835 34604147 -168481385 - AluY SINE Alu -2 309 1 498 203 102 0 chr5 34604147 34604275 -168481257 + MER58C DNA MER1_type 71 211 -4 24 53 0 0 chr5 34604580 34604618 -168480914 + AT_rich Low_complexity Low_complexity 1 38 0 211 388 103 0 chr5 34604972 34605137 -168480395 - MIR3 SINE MIR -23 185 4 2124 124 3 0 chr5 34605225 34605523 -168480009 + AluSx SINE Alu 1 299 -13 2404 53 3 10 chr5 34605766 34606065 -168479467 - AluY SINE Alu -14 297 1 643 168 48 16 chr5 34607238 34607363 -168478169 + FLAM_A SINE Alu 5 133 0 23 33 0 0 chr5 34607571 34607601 -168477931 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr5 34607656 34607678 -168477854 + (T)n Simple_repeat Simple_repeat 1 22 0 2214 120 0 10 chr5 34608103 34608411 -168477121 - AluSx SINE Alu -7 305 1 288 193 18 0 chr5 34611253 34611310 -168474222 + AluJb SINE Alu 190 247 -55 1238 157 9 14 chr5 34611310 34611520 -168474012 - AluJo SINE Alu -99 213 5 292 286 29 29 chr5 34612113 34612218 -168473314 - MIR3 SINE MIR -23 185 81 354 269 118 47 chr5 34613807 34614097 -168471435 - L1ME LINE L1 -339 5823 5508 296 149 194 0 chr5 34614453 34614520 -168471012 - AluJo SINE Alu -1 301 222 1029 176 0 28 chr5 34614520 34614696 -168470836 - AluJo SINE Alu -141 171 1 868 228 11 17 chr5 34618475 34618655 -168466877 - AluJo SINE Alu -12 300 122 894 160 100 0 chr5 34619061 34619211 -168466321 + FAM SINE Alu 4 168 -7 2288 77 40 3 chr5 34619219 34619518 -168466014 + AluY SINE Alu 1 310 -1 32 43 0 0 chr5 34621525 34621571 -168463961 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr5 34622485 34622508 -168463024 + AT_rich Low_complexity Low_complexity 1 23 0 1536 156 141 8 chr5 34623020 34623283 -168462249 - AluJb SINE Alu -4 298 1 2053 200 73 65 chr5 34623335 34623885 -168461647 + MLT2B3 LTR ERVL 1 554 0 1732 171 0 29 chr5 34624275 34624584 -168460948 - AluJb SINE Alu -10 302 3 311 190 281 33 chr5 34625134 34625255 -168460277 - MER5A DNA MER1_type -1 188 38 27 0 0 0 chr5 34625316 34625343 -168460189 + AT_rich Low_complexity Low_complexity 1 27 0 1359 178 23 23 chr5 34625494 34625752 -168459780 - AluJo SINE Alu -51 261 4 382 238 145 45 chr5 34625754 34626023 -168459509 - HAL1 LINE L1 -188 2319 2024 2108 139 0 3 chr5 34626038 34626340 -168459192 + AluSx SINE Alu 1 301 -11 1673 186 21 3 chr5 34626350 34626640 -168458892 + AluJb SINE Alu 1 295 -17 693 183 0 0 chr5 34626666 34626770 -168458762 + FLAM_C SINE Alu 2 105 -38 393 281 137 21 chr5 34626772 34627145 -168458387 - HAL1 LINE L1 -938 1569 1154 4914 147 75 12 chr5 34627465 34628310 -168457222 + MER4D LTR ERV1 1 898 -5 460 227 145 68 chr5 34628438 34628734 -168456798 + MLT1L LTR MaLR 208 437 -74 881 164 26 0 chr5 34628847 34628999 -168456533 + FRAM SINE Alu 1 155 -21 2724 113 11 5 chr5 34629023 34629396 -168456136 - THE1C LTR MaLR 0 375 1 240 317 192 0 chr5 34630035 34630139 -168455393 + MIR SINE MIR 26 149 -113 2024 139 174 8 chr5 34630144 34630511 -168455021 + MSTA LTR MaLR 1 428 0 264 271 141 12 chr5 34630919 34631004 -168454528 - LTR67 LTR ERVL -412 145 50 565 288 40 45 chr5 34631024 34631122 -168454410 - MER34 LTR ERV1 -30 512 415 2627 179 54 120 chr5 34631122 34631899 -168453633 + LTR8A LTR ERV1 2 727 0 565 288 40 45 chr5 34631899 34632022 -168453510 - MER34 LTR ERV1 -127 415 292 2343 96 3 0 chr5 34632031 34632333 -168453199 - AluSg SINE Alu -7 303 1 464 314 83 21 chr5 34632392 34632634 -168452898 - MER34 LTR ERV1 -274 268 12 207 0 0 0 chr5 34632995 34633018 -168452514 + (T)n Simple_repeat Simple_repeat 1 23 0 250 333 96 45 chr5 34633072 34633249 -168452283 + MER5A DNA MER1_type 4 189 0 35 24 0 0 chr5 34633280 34633322 -168452210 + AT_rich Low_complexity Low_complexity 1 42 0 298 287 198 0 chr5 34633681 34633838 -168451694 - MER5A DNA MER1_type 0 189 2 203 149 0 21 chr5 34634133 34634180 -168451352 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 2063 167 50 26 chr5 34634194 34634577 -168450955 - MER57A LTR ERV1 0 403 12 1274 144 159 30 chr5 34634626 34634896 -168450636 + AluSg SINE Alu 1 305 -5 842 212 56 4 chr5 34634901 34635225 -168450307 + MLT1D LTR MaLR 9 378 -127 473 141 6 65 chr5 34635248 34635418 -168450114 + GA-rich Low_complexity Low_complexity 5 164 0 236 339 0 0 chr5 34635429 34635491 -168450041 + polypurine Low_complexity Low_complexity 4 65 0 265 252 13 26 chr5 34635492 34635647 -168449885 + GA-rich Low_complexity Low_complexity 4 156 0 283 264 6 22 chr5 34635660 34635838 -168449694 + GA-rich Low_complexity Low_complexity 2 176 0 959 222 16 0 chr5 34637255 34637440 -168448092 - MER5A DNA MER1_type 0 189 2 1274 49 12 12 chr5 34638651 34638813 -168446719 - L1PA6 LINE L1 0 6154 5993 294 150 10 0 chr5 34638906 34638966 -168446566 + L1MC4 LINE L1 7927 7989 -6 190 0 32 32 chr5 34639087 34639118 -168446414 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2285 94 0 16 chr5 34639173 34639480 -168446052 - AluSx SINE Alu -10 302 1 289 200 0 0 chr5 34639481 34639526 -168446006 - L1ME1 LINE L1 -56 6110 6066 314 246 0 0 chr5 34640841 34640906 -168444626 + MIR SINE MIR 92 156 -106 448 169 28 113 chr5 34640991 34641133 -168444399 - MER5C DNA MER1_type 0 324 195 25 31 0 0 chr5 34641193 34641225 -168444307 + AT_rich Low_complexity Low_complexity 1 32 0 2295 121 0 3 chr5 34641427 34641740 -168443792 - AluSx SINE Alu 0 312 1 262 333 50 0 chr5 34641858 34641957 -168443575 - MER5C DNA MER1_type -219 105 2 * 388 208 0 0 chr5 34641957 34642029 -168443503 - MIR SINE MIR -45 217 146 2263 104 3 22 chr5 34642817 34643135 -168442397 + AluSx SINE Alu 1 312 0 623 174 109 22 chr5 34643525 34643663 -168441869 - AluJo SINE Alu -40 272 123 24 0 0 0 chr5 34643663 34643687 -168441845 + AT_rich Low_complexity Low_complexity 1 24 0 734 197 163 0 chr5 34643713 34643891 -168441641 + Tigger5 DNA MER2_type 2117 2323 0 369 0 0 0 chr5 34643917 34643958 -168441574 + (TG)n Simple_repeat Simple_repeat 2 42 0 299 297 10 10 chr5 34643958 34644059 -168441473 - L1MC4 LINE L1 -149 7893 7793 812 211 155 10 chr5 34644071 34644265 -168441267 + MER97a DNA MER1_type? 13 234 -660 1436 176 81 67 chr5 34644278 34644709 -168440823 + LTR48 LTR ERV1 1 453 -246 2106 137 81 0 chr5 34644709 34645066 -168440466 + LTR24C LTR ERV1 248 633 -2 1771 185 7 0 chr5 34645142 34645439 -168440093 + AluJb SINE Alu 1 299 -13 710 196 18 0 chr5 34645536 34645648 -168439884 - FLAM_A SINE Alu -19 114 1 291 272 87 0 chr5 34645740 34645843 -168439689 + MIR SINE MIR 90 201 -61 * 460 264 104 0 chr5 34645820 34645964 -168439568 - MIR SINE MIR -12 250 92 349 299 18 55 chr5 34646043 34646207 -168439325 - MER52A LTR ERV1 -6 1749 1592 * 961 223 3 106 chr5 34646205 34646497 -168439035 - MER52A LTR ERV1 -285 1470 1209 * 2069 185 24 18 chr5 34646478 34647116 -168438416 - LTR28 LTR ERV1 -141 495 1 713 151 50 8 chr5 34647144 34647263 -168438269 + FLAM_C SINE Alu 3 126 -7 351 0 0 0 chr5 34647272 34647311 -168438221 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 778 240 6 6 chr5 34647327 34647498 -168438034 + MER92B LTR ERV1 1 171 -465 987 179 97 151 chr5 34647505 34647840 -168437692 - LTR29 LTR ERV1 -46 576 271 204 40 0 0 chr5 34647840 34647865 -168437667 + (TC)n Simple_repeat Simple_repeat 2 26 0 987 179 97 151 chr5 34647865 34647994 -168437538 - LTR29 LTR ERV1 -351 271 137 236 313 10 10 chr5 34647999 34648095 -168437437 - MER34 LTR ERV1 -446 96 1 * 1541 165 92 104 chr5 34648095 34648405 -168437127 + MER92B LTR ERV1 157 460 -176 1496 166 21 46 chr5 34648405 34648689 -168436843 - AluJo SINE Alu -35 277 1 1541 165 92 104 chr5 34648689 34648864 -168436668 + MER92B LTR ERV1 460 636 0 2496 176 75 124 chr5 34648984 34649749 -168435783 - LTR8A LTR ERV1 0 727 1 321 292 130 38 chr5 34649773 34649958 -168435574 - LTR33 LTR ERVL -3 518 317 2411 180 22 24 chr5 34650060 34650073 -168435459 + MER65C LTR ERV1 1 13 -448 3167 156 36 39 chr5 34650073 34650451 -168435081 + LTR26B LTR ERV1 1 378 -153 1965 158 0 7 chr5 34650451 34650754 -168434778 + AluSx SINE Alu 1 301 -11 3167 156 36 39 chr5 34650754 34650908 -168434624 + LTR26B LTR ERV1 378 531 0 2411 180 22 24 chr5 34650908 34651356 -168434176 + MER65C LTR ERV1 13 461 0 226 184 0 0 chr5 34651663 34651701 -168433831 - LTR16A1 LTR ERVL 0 457 420 360 300 29 12 chr5 34651732 34651902 -168433630 + L1MC4a LINE L1 4034 4206 -1940 314 276 92 75 chr5 34651898 34652072 -168433460 + L1MC4a LINE L1 5422 5598 -2210 * 593 258 47 25 chr5 34652131 34652376 -168433156 + L1MC4a LINE L1 5692 5943 -178 3060 171 55 4 chr5 34653272 34653799 -168431733 - MER21A LTR ERV1 0 931 378 518 178 107 12 chr5 34653805 34653999 -168431533 - MER21A LTR ERV1 -667 264 14 257 255 20 0 chr5 34654005 34654107 -168431425 + (TATATG)n Simple_repeat Simple_repeat 1 104 0 675 231 8 8 chr5 34654447 34654577 -168430955 - FLAM_A SINE Alu -3 130 1 563 274 28 36 chr5 34654686 34654934 -168430598 - MER34B LTR ERV1 0 565 320 2229 120 0 3 chr5 34654959 34655268 -168430264 - AluSc SINE Alu -1 308 1 207 100 0 0 chr5 34655273 34655303 -168430229 + (T)n Simple_repeat Simple_repeat 1 30 0 1588 204 10 13 chr5 34655307 34655620 -168429912 - AluJb SINE Alu 0 312 1 2154 106 0 7 chr5 34655647 34655950 -168429582 + AluSx SINE Alu 2 302 0 323 261 70 26 chr5 34656059 34656174 -168429358 - MER34B LTR ERV1 -445 120 1 395 337 17 11 chr5 34656876 34657054 -168428478 - L1ME LINE L1 -429 5692 5514 1010 172 50 10 chr5 34657457 34657655 -168427877 + AluJo SINE Alu 107 312 0 363 186 0 12 chr5 34657678 34657764 -168427768 - L1MA7 LINE L1 0 6291 6207 671 142 42 0 chr5 34657992 34658112 -168427420 - L1MA6 LINE L1 -80 6220 6096 325 254 111 56 chr5 34658175 34658301 -168427231 - MER5A DNA MER1_type -56 133 1 468 293 25 13 chr5 34658567 34658724 -168426808 - MLT1G1 LTR MaLR -7 588 430 531 260 32 13 chr5 34658819 34658973 -168426559 - MLT1H1 LTR MaLR -367 188 32 27 49 0 0 chr5 34659117 34659158 -168426374 + AT_rich Low_complexity Low_complexity 1 41 0 2267 120 0 0 chr5 34661631 34661940 -168423592 - AluSq SINE Alu -4 309 1 573 212 0 17 chr5 34662145 34662263 -168423269 + MLT1F LTR MaLR 1 116 -426 417 285 13 7 chr5 34662369 34662520 -168423012 + MER103 DNA DNA 13 164 -2 2236 111 0 7 chr5 34662600 34662898 -168422634 + AluSx SINE Alu 1 296 -16 194 353 15 0 chr5 34662904 34662972 -168422560 - L3 LINE CR1 -459 1118 1050 25 75 0 0 chr5 34663179 34663232 -168422300 + AT_rich Low_complexity Low_complexity 1 53 0 25 0 0 0 chr5 34663382 34663407 -168422125 + AT_rich Low_complexity Low_complexity 1 25 0 1893 174 0 7 chr5 34663407 34663717 -168421815 - AluJb SINE Alu -4 308 1 2279 103 33 43 chr5 34664194 34664562 -168420970 - THE1B LTR MaLR 0 364 1 1661 199 0 7 chr5 34664747 34665049 -168420483 - AluJo SINE Alu -10 302 3 3687 213 20 50 chr5 34665068 34666012 -168419520 + MER31-int LTR ERV1 3329 4244 -692 310 245 93 29 chr5 34666016 34666155 -168419377 + LTR37A LTR ERV1 1 148 -278 3620 148 43 50 chr5 34666625 34666880 -168418652 - L1MA7 LINE L1 -303 5988 5733 2530 52 0 16 chr5 34666880 34667186 -168418346 + AluY SINE Alu 1 301 -10 3620 148 43 50 chr5 34667186 34668142 -168417390 - L1MA7 LINE L1 -558 5733 4785 279 0 0 0 chr5 34668313 34668344 -168417188 + (TG)n Simple_repeat Simple_repeat 1 31 0 386 271 129 39 chr5 34668522 34668677 -168416855 + MER5A DNA MER1_type 16 184 -5 2819 164 39 30 chr5 34668751 34668906 -168416626 + MER89 LTR ERV1 4 156 -403 1877 157 7 10 chr5 34668906 34669199 -168416333 - AluJb SINE Alu -20 292 1 2819 164 39 30 chr5 34669199 34669585 -168415947 + MER89 LTR ERV1 156 550 -9 2001 138 0 23 chr5 34670153 34670458 -168415074 - AluSx SINE Alu -14 298 1 369 247 10 10 chr5 34671524 34671621 -168413911 + MER115 DNA AcHobo 597 693 0 4673 115 86 118 chr5 34671955 34673376 -168412156 - pTR5 LTR ERV1 0 2438 743 2116 186 65 108 chr5 34673868 34674561 -168410971 + LTR8A LTR ERV1 1 663 -64 553 110 0 0 chr5 34676255 34676328 -168409204 + FRAM SINE Alu 70 142 -34 2500 110 31 6 chr5 34676594 34676949 -168408583 + THE1B LTR MaLR 1 364 0 675 218 40 17 chr5 34677012 34677186 -168408346 - LTR16C LTR ERVL -15 476 299 559 175 132 9 chr5 34677439 34677553 -168407979 + MER5A DNA MER1_type 3 130 -59 1387 198 31 42 chr5 34677555 34677909 -168407623 - L1ME2 LINE L1 -145 6019 5670 583 220 53 8 chr5 34678038 34678170 -168407362 + MER82 DNA MER2_type 294 431 -222 2262 114 7 0 chr5 34678178 34678484 -168407048 + AluSx SINE Alu 1 308 -4 428 211 266 0 chr5 34678517 34678626 -168406906 + MER82 DNA MER2_type 510 647 -6 1590 178 45 14 chr5 34678656 34678823 -168406709 - AluJo SINE Alu -17 295 114 468 0 0 0 chr5 34678823 34678875 -168406657 + (TA)n Simple_repeat Simple_repeat 2 53 0 1590 178 45 14 chr5 34678875 34678993 -168406539 - AluJo SINE Alu -198 114 1 792 169 15 0 chr5 34678999 34679129 -168406403 - FLAM_C SINE Alu -1 132 1 1084 181 18 53 chr5 34679950 34680176 -168405356 - MER20 DNA MER1_type 0 219 2 192 317 0 0 chr5 34680249 34680309 -168405223 - L2 LINE L2 -218 3054 2995 239 276 0 26 chr5 34685056 34685132 -168400400 + MLT1H LTR MaLR 95 168 -381 3036 84 28 56 chr5 34685361 34685860 -168399672 + L1PB2 LINE L1 5666 6150 -1 532 312 45 10 chr5 34685942 34686141 -168399391 - MIR SINE MIR -51 211 6 2457 80 7 0 chr5 34686189 34686489 -168399043 + AluSq SINE Alu 1 302 -11 2126 108 10 20 chr5 34687353 34687650 -168397882 - AluSx SINE Alu -18 294 1 1222 251 26 62 chr5 34688270 34688736 -168396796 + MLT1C LTR MaLR 2 450 -17 268 277 124 36 chr5 34688812 34689022 -168396510 - MIR SINE MIR -15 247 21 266 283 71 9 chr5 34689686 34689799 -168395733 + L2 LINE L2 3153 3272 0 461 228 235 0 chr5 34690824 34690973 -168394559 - MER5A DNA MER1_type -2 187 4 471 323 47 17 chr5 34691136 34691371 -168394161 + L2 LINE L2 2243 2484 -830 535 342 46 26 chr5 34691551 34691858 -168393674 + LTR16A1 LTR ERVL 141 453 -4 23 0 0 0 chr5 34692029 34692052 -168393480 + AT_rich Low_complexity Low_complexity 1 23 0 229 210 37 37 chr5 34692752 34692833 -168392699 + MLT1K LTR MaLR 183 263 -325 1007 155 12 6 chr5 34693571 34693732 -168391800 - AluSg/x SINE Alu -22 288 127 313 222 59 111 chr5 34693839 34693992 -168391540 - HAL1 LINE L1 -2342 165 21 233 158 0 0 chr5 34694738 34694776 -168390756 - LTR65 LTR ERV1 -285 384 347 2117 138 47 11 chr5 34695504 34695866 -168389666 - THE1C LTR MaLR 0 375 1 2277 125 0 0 chr5 34696363 34696666 -168388866 - AluSx SINE Alu -9 303 1 38362 86 6 13 chr5 34697250 34703448 -168382084 + L1PA6 LINE L1 5 6154 0 899 222 16 0 chr5 34704668 34704853 -168380679 + MER5A DNA MER1_type 2 189 0 284 349 54 12 chr5 34705737 34705903 -168379629 + MIR SINE MIR 42 214 -48 297 0 0 0 chr5 34706137 34706170 -168379362 + (CA)n Simple_repeat Simple_repeat 1 33 0 249 260 42 0 chr5 34707029 34707125 -168378407 + MIR SINE MIR 66 165 -97 284 338 36 36 chr5 34709712 34709851 -168375681 + MIR3 SINE MIR 25 163 -45 913 158 6 6 chr5 34710099 34710262 -168375270 - L1 LINE L1 -1284 4862 4697 6720 67 11 10 chr5 34710262 34711313 -168374219 + L1PA13 LINE L1 5108 6160 -3 188 152 0 0 chr5 34711389 34711422 -168374110 - MIR SINE MIR -14 248 216 299 353 65 30 chr5 34711523 34711755 -168373777 - L2 LINE L2 -181 3091 2852 260 325 33 25 chr5 34712003 34712123 -168373409 + Tigger8 DNA MER2_type 539 659 -7 1744 169 3 17 chr5 34712691 34712986 -168372546 - AluSx SINE Alu -21 291 1 251 167 90 39 chr5 34712995 34713073 -168372459 + MER104 DNA Tc2 35 116 -64 381 302 22 50 chr5 34713540 34713722 -168371810 - MIR SINE MIR -57 205 29 1639 143 103 50 chr5 34713910 34714426 -168371106 + LTR18B LTR ERVL 1 591 -23 826 164 16 8 chr5 34714948 34715076 -168370456 + AluJb SINE Alu 163 291 -21 3715 127 27 14 chr5 34715147 34715667 -168369865 + MER1A DNA MER1_type 1 527 0 2224 129 3 0 chr5 34717036 34717346 -168368186 + AluSx SINE Alu 1 311 -1 5439 40 3 0 chr5 34717749 34718370 -168367162 + L1PA5 LINE L1 5532 6154 0 430 284 35 47 chr5 34718696 34718865 -168366667 + MER5B DNA MER1_type 6 172 -6 1708 187 7 0 chr5 34718937 34719226 -168366306 + AluJo SINE Alu 1 291 -21 561 188 169 0 chr5 34719499 34719653 -168365879 - MER5A DNA MER1_type -1 188 9 2095 138 3 0 chr5 34720071 34720367 -168365165 - AluSx SINE Alu -15 297 1 1108 231 63 7 chr5 34720645 34720914 -168364618 + MLT1H LTR MaLR 6 289 -260 705 269 109 0 chr5 34721226 34721427 -168364105 - MIR SINE MIR -10 252 30 233 318 75 30 chr5 34721613 34721814 -168363718 - L2 LINE L2 -213 3059 2850 360 288 29 29 chr5 34722104 34722243 -168363289 - MER20 DNA MER1_type -17 202 64 23 0 0 0 chr5 34722579 34722602 -168362930 + AT_rich Low_complexity Low_complexity 1 23 0 1816 139 25 7 chr5 34722602 34722883 -168362649 - AluSx SINE Alu -26 286 1 186 71 0 0 chr5 34723096 34723124 -168362408 + (T)n Simple_repeat Simple_repeat 1 28 0 1469 186 18 21 chr5 34723624 34723903 -168361629 + AluJo SINE Alu 12 289 -23 250 314 77 39 chr5 34723920 34724127 -168361405 + L2 LINE L2 2454 2668 -646 1130 213 79 50 chr5 34724128 34724546 -168360986 + MLT1J1 LTR MaLR 2 431 -15 469 324 53 6 chr5 34725330 34725500 -168360032 + MIR SINE MIR 25 202 -60 44731 39 1 2 chr5 34726087 34732196 -168353336 + L1PA3 LINE L1 53 6155 0 357 317 24 0 chr5 34732787 34732910 -168352622 - MIR3 SINE MIR -2 206 81 21 0 0 0 chr5 34736369 34736390 -168349142 + AT_rich Low_complexity Low_complexity 1 21 0 190 302 63 0 chr5 34737125 34737188 -168348344 + MIR SINE MIR 120 186 -76 205 205 0 0 chr5 34737266 34737305 -168348227 + (TAA)n Simple_repeat Simple_repeat 1 39 0 2307 137 27 19 chr5 34737607 34737979 -168347553 - THE1C LTR MaLR 0 375 1 370 188 34 51 chr5 34738170 34738287 -168347245 + Charlie8 DNA MER1_type 77 191 -2226 2249 180 56 16 chr5 34739119 34739564 -168345968 + MLT1C LTR MaLR 1 463 -4 7130 101 6 1 chr5 34740286 34741279 -168344253 - L1MA1 LINE L1 -4 6298 5292 598 220 120 66 chr5 34741470 34741711 -168343821 + MIR SINE MIR 2 255 -7 374 238 26 22 chr5 34742032 34742199 -168343333 - MIR SINE MIR -13 249 54 390 57 0 0 chr5 34742459 34742512 -168343020 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 227 269 0 0 chr5 34742939 34742991 -168342541 - MIR SINE MIR -203 59 8 1856 140 11 0 chr5 34744892 34745156 -168340376 - AluJb SINE Alu -26 286 20 356 269 105 35 chr5 34746527 34746698 -168338834 + MIR SINE MIR 80 262 0 22 56 0 0 chr5 34747273 34747309 -168338223 + AT_rich Low_complexity Low_complexity 1 36 0 1082 241 103 41 chr5 34747740 34748060 -168337472 + MSTD LTR MaLR 1 340 -56 822 154 31 0 chr5 34748068 34748198 -168337334 - FLAM_C SINE Alu -8 135 2 515 83 28 0 chr5 34748202 34748274 -168337258 + MSTD LTR MaLR 323 396 0 258 32 0 0 chr5 34748505 34748536 -168336996 + (TG)n Simple_repeat Simple_repeat 1 31 0 893 151 0 123 chr5 34749145 34749357 -168336175 + MER20 DNA MER1_type 1 186 -33 2512 66 0 25 chr5 34749360 34749679 -168335853 + AluSp SINE Alu 1 311 -2 287 200 18 0 chr5 34749703 34749758 -168335774 + MER20 DNA MER1_type 164 219 0 23 86 0 0 chr5 34750062 34750120 -168335412 + AT_rich Low_complexity Low_complexity 1 58 0 31 26 0 0 chr5 34750372 34750410 -168335122 + AT_rich Low_complexity Low_complexity 1 38 0 1490 132 5 0 chr5 34750417 34750629 -168334903 + AluSx SINE Alu 2 214 -98 387 280 62 43 chr5 34750755 34750966 -168334566 + MIR SINE MIR 8 222 -40 2317 55 3 17 chr5 34750988 34751280 -168334252 + L1PA8 LINE L1 5882 6169 -3 1918 154 33 27 chr5 34751458 34751790 -168333742 + THE1B LTR MaLR 1 334 -30 341 232 42 21 chr5 34752692 34752787 -168332745 - MIR SINE MIR -61 201 105 220 244 188 38 chr5 34753064 34753224 -168332308 - MIR3 SINE MIR -13 195 12 1180 248 150 38 chr5 34754387 34754920 -168330612 + MLT1G LTR MaLR 1 588 -2 337 252 181 0 chr5 34755042 34755169 -168330363 + LTR33 LTR ERVL 1 150 -371 * 395 276 118 54 chr5 34755167 34755370 -168330162 + LTR33 LTR ERVL 304 519 -2 351 0 0 0 chr5 34756761 34756800 -168328732 + (TG)n Simple_repeat Simple_repeat 1 39 0 240 170 57 0 chr5 34757059 34757112 -168328420 + GA-rich Low_complexity Low_complexity 6 61 0 349 197 95 80 chr5 34757374 34757511 -168328021 + MIR SINE MIR 53 191 -71 522 188 97 49 chr5 34811882 34812026 -168273506 - MER31A LTR ERV1 -334 151 1 1641 167 52 0 chr5 34812047 34812317 -168273215 - AluSx SINE Alu -12 300 17 951 242 19 0 chr5 34812512 34812727 -168272805 - MER20 DNA MER1_type 0 219 1 2372 92 3 0 chr5 34812774 34813068 -168272464 - AluSp SINE Alu -13 300 6 1133 127 6 0 chr5 34813812 34813977 -168271555 - AluSg/x SINE Alu 0 312 147 826 161 112 45 chr5 34814090 34814332 -168271200 + Charlie5 DNA MER1_type 2328 2585 -27 202 205 0 0 chr5 34814733 34814772 -168270760 + GA-rich Low_complexity Low_complexity 2 40 0 2304 138 5 35 chr5 34814821 34815250 -168270282 + L1MB3 LINE L1 5759 6174 -9 2671 37 0 0 chr5 34815503 34815803 -168269729 + AluY SINE Alu 1 300 -11 199 373 73 9 chr5 34816740 34816850 -168268682 - L2 LINE L2 -19 3253 3137 2984 79 33 12 chr5 34816851 34817270 -168268262 + LTR10D LTR ERV1 1 428 -85 7504 64 1 0 chr5 34817560 34818597 -168266935 + L1PA7 LINE L1 5099 6154 0 6098 81 24 29 chr5 34818613 34819505 -168266027 + L1PA10 LINE L1 5281 6167 -1 649 343 58 38 chr5 34820132 34820584 -168264948 - L2 LINE L2 -12 3301 2841 213 323 138 8 chr5 34821604 34821734 -168263798 + MIR SINE MIR 2 148 -114 794 74 89 0 chr5 34822197 34822332 -168263200 + LTR10D LTR ERV1 367 513 0 1184 100 0 0 chr5 34823015 34823165 -168262367 + AluSx SINE Alu 4 153 -159 2435 99 0 0 chr5 34823231 34823543 -168261989 + AluSq SINE Alu 1 312 -1 1148 221 50 22 chr5 34823565 34823927 -168261605 + L1MD2 LINE L1 4787 5158 -988 625 197 59 20 chr5 34823950 34824102 -168261430 + L1MB7 LINE L1 6027 6184 0 * 5483 167 65 15 chr5 34824085 34825237 -168260295 + L1MD2 LINE L1 5159 6357 -2 2188 228 26 28 chr5 34827576 34828112 -168257420 - L1MA10 LINE L1 0 6334 5800 1343 148 29 6 chr5 34828114 34828552 -168256980 + LTR54 LTR ERV1 3 510 0 2933 194 50 2 chr5 34828552 34829398 -168256134 - L1MA10 LINE L1 -529 5805 4922 1615 132 92 4 chr5 34829394 34829621 -168255911 - L1PB1 LINE L1 -130 6021 5763 * 321 26 0 0 chr5 34829621 34829659 -168255873 + (TG)n Simple_repeat Simple_repeat 2 39 0 1615 132 92 4 chr5 34829659 34829712 -168255820 - L1PB1 LINE L1 -388 5763 5716 600 191 40 0 chr5 34829705 34829831 -168255701 - L1PB1 LINE L1 -814 5332 5202 * 1411 157 52 41 chr5 34829832 34829881 -168255651 + L1 LINE L1 4309 4356 -1790 2013 121 14 0 chr5 34829881 34830192 -168255340 + AluSx SINE Alu 1 315 0 1411 157 52 41 chr5 34830192 34830485 -168255047 + L1 LINE L1 4356 4656 -1490 3341 95 97 0 chr5 34830568 34831061 -168254471 - L1P LINE L1 -3513 2633 2093 * 6317 97 3 3 chr5 34831060 34831937 -168253595 + L1P LINE L1 3896 4772 -1374 1159 153 0 0 chr5 34832063 34832266 -168253266 + L1MA4 LINE L1 6094 6296 -4 1183 204 13 144 chr5 34832959 34833205 -168252327 + LTR37B LTR ERV1 9 151 -317 1742 197 44 33 chr5 34833205 34833566 -168251966 + MLT1A1 LTR MaLR 1 365 0 1183 204 13 144 chr5 34833566 34833848 -168251684 + LTR37B LTR ERV1 151 468 0 740 246 133 0 chr5 34834539 34834734 -168250798 - MIR SINE MIR -6 256 36 2330 160 6 9 chr5 34835461 34835799 -168249733 + MER1B DNA MER1_type 1 337 0 336 366 22 0 chr5 34836166 34836300 -168249232 - MIR SINE MIR -22 240 104 440 220 46 54 chr5 34836527 34836702 -168248830 + L1MC/D LINE L1 5517 5707 -514 264 30 0 0 chr5 34837471 34837504 -168248028 + (CA)n Simple_repeat Simple_repeat 1 33 0 2291 210 47 67 chr5 34837900 34838542 -168246990 + L1ME3A LINE L1 5506 6134 -36 559 297 54 5 chr5 34839551 34839736 -168245796 - MIR SINE MIR -27 235 42 225 394 14 7 chr5 34840692 34840834 -168244698 + MIR3 SINE MIR 2 144 -64 222 264 75 47 chr5 34841253 34841359 -168244173 + MIR SINE MIR 39 147 -115 1743 225 48 62 chr5 34841539 34841733 -168243799 + MER110 LTR ERV1 1 196 -295 2504 62 0 7 chr5 34841733 34842041 -168243491 - AluY SINE Alu -5 306 1 1743 225 48 62 chr5 34842041 34842344 -168243188 + MER110 LTR ERV1 196 491 0 715 283 11 11 chr5 34842956 34843136 -168242396 + MER5A DNA MER1_type 7 186 -3 389 269 81 42 chr5 34843136 34843295 -168242237 - MIR3 SINE MIR -22 186 14 1653 210 91 20 chr5 34843595 34844000 -168241532 - MER57B LTR ERV1 0 434 1 283 295 80 18 chr5 34844779 34844891 -168240641 + L2 LINE L2 2851 2969 -303 275 212 18 26 chr5 34846083 34846196 -168239336 + (TATATG)n Simple_repeat Simple_repeat 3 114 0 1262 264 20 7 chr5 34846345 34846648 -168238884 - MER93a LTR ERV1 -4 398 92 414 281 135 16 chr5 34847419 34847611 -168237921 + MIR SINE MIR 22 236 -26 1032 158 0 0 chr5 34847681 34847846 -168237686 - AluSg/x SINE Alu -8 302 138 559 246 14 14 chr5 34848439 34848581 -168236951 + MER117 DNA MER1_type 2 143 -54 262 316 21 11 chr5 34848599 34848694 -168236838 + MER117 DNA MER1_type 100 195 -2 390 243 102 83 chr5 34849236 34849669 -168235863 + L1ME4a LINE L1 5624 6064 -57 509 292 124 5 chr5 34849822 34850024 -168235508 + MIR SINE MIR 5 230 -32 307 284 120 33 chr5 34850315 34850498 -168235034 - MIR SINE MIR -51 211 13 423 0 0 0 chr5 34850498 34850545 -168234987 + (CA)n Simple_repeat Simple_repeat 2 48 0 289 215 0 15 chr5 34851616 34851681 -168233851 - MIR SINE MIR -112 150 87 796 186 14 0 chr5 34851717 34851857 -168233675 - MER5A DNA MER1_type -47 142 1 425 155 0 129 chr5 34851865 34851981 -168233551 - MER58 DNA MER1_type 0 2420 2320 499 237 10 0 chr5 34851995 34852092 -168233440 - MER58 DNA MER1_type -2321 99 2 2247 111 0 16 chr5 34852546 34852862 -168232670 - AluSx SINE Alu -1 311 1 992 249 26 52 chr5 34853805 34853889 -168231643 - MER46C DNA MER2_type -1 337 252 1289 123 24 24 chr5 34853889 34854100 -168231432 + L1MB2 LINE L1 5960 6170 -1 992 249 26 52 chr5 34854100 34854361 -168231171 - MER46C DNA MER2_type -86 252 1 195 198 119 119 chr5 34854399 34854500 -168231032 - MIR SINE MIR -110 152 52 283 158 13 13 chr5 34855755 34855831 -168229701 + (CA)n Simple_repeat Simple_repeat 1 76 0 187 364 78 0 chr5 34855880 34855957 -168229575 + L3 LINE CR1 1027 1109 -468 240 271 0 0 chr5 34855957 34856005 -168229527 + (TG)n Simple_repeat Simple_repeat 1 48 0 375 254 100 23 chr5 34856545 34856675 -168228857 - MIR3 SINE MIR -54 154 15 350 200 0 0 chr5 34856851 34856906 -168228626 - MER45C DNA AcHobo 0 953 899 * 772 297 102 27 chr5 34856901 34857194 -168228338 - MER45C DNA AcHobo -320 633 319 1230 289 11 8 chr5 34857203 34857570 -168227962 - MER45C DNA AcHobo -585 368 1 2004 179 40 5 chr5 34857687 34858062 -168227470 - MLT1B LTR MaLR 0 390 3 2256 72 0 0 chr5 34858137 34858402 -168227130 - AluSc SINE Alu -21 288 24 277 246 96 36 chr5 34858445 34858612 -168226920 + L2 LINE L2 3081 3257 -56 180 0 0 0 chr5 34858830 34858850 -168226682 + (A)n Simple_repeat Simple_repeat 1 20 0 213 397 0 0 chr5 34859105 34859183 -168226349 - L2 LINE L2 0 3272 3195 234 91 0 0 chr5 34859240 34859273 -168226259 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1088 227 138 37 chr5 34859293 34859721 -168225811 - L2 LINE L2 -34 3279 2809 345 82 0 0 chr5 34860185 34860234 -168225298 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 292 339 67 24 chr5 34860562 34860727 -168224805 - L2 LINE L2 -5 3267 3096 463 342 124 11 chr5 34860946 34861221 -168224311 - L2 LINE L2 -528 2786 2481 1384 194 23 48 chr5 34861307 34861617 -168223915 - AluJo SINE Alu -8 304 3 1386 215 20 81 chr5 34863164 34863573 -168221959 + MLT2C1 LTR ERVL 14 397 0 225 279 0 33 chr5 34863730 34863791 -168221741 + L1MEd LINE L1 427 485 -5634 519 294 119 44 chr5 34863827 34864237 -168221295 + L1ME3 LINE L1 5396 5839 -323 294 315 11 0 chr5 34864394 34864483 -168221049 + L2 LINE L2 3224 3313 0 190 300 27 120 chr5 34865848 34865998 -168219534 + MIR3 SINE MIR 67 202 -6 476 266 191 11 chr5 34868899 34869087 -168216445 + MIR SINE MIR 13 234 -28 381 276 138 0 chr5 34869552 34869704 -168215828 + MIR SINE MIR 78 250 -12 2036 96 0 57 chr5 34871061 34871391 -168214141 + AluSq SINE Alu 1 313 0 415 223 43 36 chr5 34871515 34871654 -168213878 - L1ME3A LINE L1 -102 6068 5929 1116 205 0 0 chr5 34873348 34873553 -168211979 + MER3 DNA MER1_type 1 205 -4 514 288 55 0 chr5 34874221 34874384 -168211148 + MIR SINE MIR 79 250 -12 522 253 159 43 chr5 34874424 34874657 -168210875 + MIR SINE MIR 1 260 -2 419 291 64 25 chr5 34875847 34876043 -168209489 + MIR SINE MIR 16 223 -39 436 290 49 16 chr5 34876449 34876632 -168208900 - MER5A DNA MER1_type 0 189 1 390 42 0 0 chr5 34877380 34877428 -168208104 + (TG)n Simple_repeat Simple_repeat 1 48 0 2247 112 3 13 chr5 34878411 34878725 -168206807 + AluSx SINE Alu 1 311 -1 2424 80 0 0 chr5 34878727 34879038 -168206494 + AluY SINE Alu 1 311 0 2004 183 129 5 chr5 34879619 34880068 -168205464 + MLT1D LTR MaLR 1 505 0 392 209 127 51 chr5 34880154 34880312 -168205220 + MER112 DNA MER1_type 20 189 -71 237 291 139 35 chr5 34880369 34880541 -168204991 + MIR SINE MIR 58 247 -15 978 296 52 19 chr5 34880664 34881029 -168204503 - L3 LINE CR1 -124 1453 1077 403 236 146 26 chr5 34881591 34881900 -168203632 - L1MC4 LINE L1 -1 8041 7696 1383 202 107 3 chr5 34882558 34882894 -168202638 + L1MC3 LINE L1 7065 7435 -350 934 241 14 21 chr5 34882900 34883186 -168202346 + L1MC3 LINE L1 7502 7785 0 669 273 152 29 chr5 34883380 34883860 -168201672 + L1ME4a LINE L1 5581 6119 -2 248 312 7 52 chr5 34884240 34884394 -168201138 + GA-rich Low_complexity Low_complexity 3 149 0 1142 177 83 133 chr5 34885334 34885814 -168199718 + MLT1D LTR MaLR 3 458 -47 304 294 24 48 chr5 34886288 34886414 -168199118 + MIR SINE MIR 82 204 -58 465 180 0 0 chr5 34887279 34887368 -168198164 + CT-rich Low_complexity Low_complexity 2 90 0 428 256 0 0 chr5 34887401 34887487 -168198045 - AluJ/FLAM SINE Alu -224 88 3 354 301 0 65 chr5 34887589 34887712 -168197820 + L2 LINE L2 3193 3307 -6 21 57 0 0 chr5 34888024 34888059 -168197473 + AT_rich Low_complexity Low_complexity 1 35 0 629 166 48 0 chr5 34888080 34888225 -168197307 + L1MB3 LINE L1 6014 6165 -18 1495 164 24 95 chr5 34888319 34888655 -168196877 - AluJo SINE Alu 0 312 1 348 121 0 30 chr5 34890529 34890595 -168194937 - MADE1 DNA Mariner -13 67 4 331 283 47 9 chr5 34890651 34890757 -168194775 - L2 LINE L2 0 3313 3204 184 237 0 0 chr5 34890806 34890844 -168194688 - L2 LINE L2 -220 3052 3015 561 216 68 68 chr5 34891169 34891433 -168194099 + LTR37B LTR ERV1 203 466 -2 517 205 7 93 chr5 34891465 34891616 -168193916 + MER5A DNA MER1_type 52 189 0 1034 209 36 8 chr5 34892017 34892266 -168193266 + L1MA9 LINE L1 1 256 -6774 755 161 109 6 chr5 34892266 34892440 -168193092 + MLT1A1 LTR MaLR 1 192 -173 12789 175 33 15 chr5 34892444 34895683 -168189849 + L1MA9 LINE L1 3316 6634 -638 2390 103 3 0 chr5 34895683 34895984 -168189548 - AluSq SINE Alu -11 302 1 12789 175 33 15 chr5 34895984 34896629 -168188903 + L1MA9 LINE L1 6634 7266 -6 230 283 8 0 chr5 34897660 34897780 -168187752 + (TA)n Simple_repeat Simple_repeat 2 122 0 374 293 173 7 chr5 34897845 34897995 -168187537 - MER5A DNA MER1_type -1 188 14 2299 19 19 0 chr5 34898197 34898465 -168187067 - L1PA3 LINE L1 -3 6152 5880 348 329 39 13 chr5 34898582 34898737 -168186795 + L1MEc LINE L1 1806 1964 -4432 7809 248 56 13 chr5 34898755 34901939 -168183593 + L1MEc LINE L1 2048 5334 -881 258 176 0 0 chr5 34901939 34901990 -168183542 + (TG)n Simple_repeat Simple_repeat 1 51 0 2860 242 52 4 chr5 34902005 34902830 -168182702 + L1MB8 LINE L1 5313 6177 -1 189 219 0 0 chr5 34902931 34902963 -168182569 + MER5B DNA MER1_type 18 49 -129 288 304 49 10 chr5 34904376 34904478 -168181054 - L2 LINE L2 -14 3258 3153 253 171 14 14 chr5 34904895 34904965 -168180567 + GA-rich Low_complexity Low_complexity 5 74 0 410 264 83 47 chr5 34906417 34906770 -168178762 - L1MC5 LINE L1 -184 7777 7403 2414 83 0 13 chr5 34906770 34907083 -168178449 + AluSc SINE Alu 1 309 0 410 264 83 47 chr5 34907083 34907172 -168178360 - L1MC5 LINE L1 -558 7403 7319 285 109 0 0 chr5 34907280 34907326 -168178206 + (TA)n Simple_repeat Simple_repeat 2 47 0 235 289 35 28 chr5 34907366 34907508 -168178024 - L1MC4 LINE L1 -574 7468 7326 375 291 199 7 chr5 34907752 34907903 -168177629 + MIR3 SINE MIR 13 192 -16 2165 127 7 0 chr5 34908493 34908793 -168176739 - AluSx SINE Alu -10 302 1 425 272 53 18 chr5 34909260 34909374 -168176158 - MER91A DNA MER1_type -70 126 9 1660 264 67 10 chr5 34910182 34910874 -168174658 - L1PBa LINE L1 -6052 811 81 25 31 0 0 chr5 34911452 34911484 -168174048 + AT_rich Low_complexity Low_complexity 1 32 0 291 340 37 6 chr5 34913028 34913190 -168172342 + MLT1I LTR MaLR 40 206 -203 181 216 108 14 chr5 34914137 34914211 -168171321 + MIR SINE MIR 125 205 -57 1833 153 66 34 chr5 34914713 34914932 -168170600 - MLT1B LTR MaLR 0 390 153 2337 105 3 0 chr5 34914932 34915236 -168170296 - AluSx SINE Alu -6 306 2 1833 153 66 34 chr5 34915236 34915394 -168170138 - MLT1B LTR MaLR -237 153 1 195 285 66 73 chr5 34916042 34916193 -168169339 + MIR SINE MIR 102 251 -11 357 253 11 0 chr5 34917233 34917320 -168168212 - MER63 DNA MER1_type 0 1061 974 1551 209 112 38 chr5 34917336 34917782 -168167750 + MLT1D LTR MaLR 27 505 0 604 134 52 0 chr5 34917782 34917877 -168167655 - MER63 DNA MER1_type -84 752 27 201 226 0 0 chr5 34917931 34917984 -168167548 + (ATATG)n Simple_repeat Simple_repeat 1 53 0 251 292 97 0 chr5 34918126 34918198 -168167334 - L2 LINE L2 0 3272 3194 2320 155 14 11 chr5 34918388 34918750 -168166782 + MLT1A1 LTR MaLR 1 363 -2 284 310 50 0 chr5 34919388 34919488 -168166044 - L2 LINE L2 0 3272 3168 2647 101 28 8 chr5 34920091 34920448 -168165084 - THE1B LTR MaLR 0 364 1 430 331 21 7 chr5 34920473 34920615 -168164917 + MIR SINE MIR 60 203 -59 336 227 39 70 chr5 34920931 34921059 -168164473 + MLT1H LTR MaLR 396 519 -30 25 31 0 0 chr5 34921759 34921791 -168163741 + AT_rich Low_complexity Low_complexity 1 32 0 970 179 12 30 chr5 34922241 34922409 -168163123 + FRAM SINE Alu 1 165 -1 22 35 0 0 chr5 34922571 34922600 -168162932 + AT_rich Low_complexity Low_complexity 1 29 0 487 331 105 26 chr5 34923296 34923716 -168161816 + L2 LINE L2 2510 2962 -352 282 254 0 0 chr5 34923722 34923781 -168161751 - MIR SINE MIR -64 144 86 771 278 31 18 chr5 34923841 34924064 -168161468 + MIR SINE MIR 23 248 -14 185 244 0 0 chr5 34924032 34924073 -168161459 + L2 LINE L2 3262 3302 -11 * 770 190 40 35 chr5 34924785 34924959 -168160573 + MER5B DNA MER1_type 1 175 -3 465 224 41 41 chr5 34925082 34925252 -168160280 - MER112 DNA MER1_type -90 170 1 364 317 34 14 chr5 34925252 34925407 -168160125 - MIR3 SINE MIR -48 160 1 497 197 180 0 chr5 34925641 34925795 -168159737 - MER5A DNA MER1_type 0 189 4 346 253 142 12 chr5 34925954 34926116 -168159416 - L1MEc LINE L1 -4925 1471 1289 362 241 190 55 chr5 34926118 34926355 -168159177 - L2 LINE L2 -101 3212 2944 1386 273 92 34 chr5 34927749 34928498 -168157034 - L2 LINE L2 -100 3213 2404 1704 173 3 14 chr5 34928498 34928787 -168156745 + AluJo SINE Alu 6 291 -21 1386 273 92 34 chr5 34928787 34928863 -168156669 - L2 LINE L2 -909 2404 2334 1711 268 24 16 chr5 34928878 34929378 -168156154 - L1ME3A LINE L1 -28 6142 5639 238 280 13 27 chr5 34929408 34929483 -168156049 + MLT1G1 LTR MaLR 248 321 -274 352 238 0 0 chr5 34929483 34929563 -168155969 + L1ME3A LINE L1 5881 5960 -210 670 227 39 84 chr5 34929621 34929907 -168155625 - L1ME3A LINE L1 -580 5584 5312 1420 248 109 80 chr5 34929912 34930450 -168155082 + MLT1G1 LTR MaLR 1 593 -2 1026 276 105 26 chr5 34930457 34930925 -168154607 - L1ME3A LINE L1 -840 5306 4802 1247 266 126 65 chr5 34930925 34931617 -168153915 - L2 LINE L2 -965 2349 1616 1314 223 33 50 chr5 34931717 34932081 -168153451 + MLT1A2 LTR MaLR 1 358 -16 1311 153 27 110 chr5 34932688 34933061 -168152471 - L1MA7 LINE L1 -22 6269 5928 1147 186 30 60 chr5 34933962 34934295 -168151237 - L1MC5 LINE L1 -30 7931 7609 255 229 0 14 chr5 34934326 34934396 -168151136 - L1MC/D LINE L1 -1911 5897 5829 4014 190 48 33 chr5 34934483 34936187 -168149345 - L1MA9 LINE L1 -30 6282 4547 396 331 41 0 chr5 34936543 34936664 -168148868 + MIR3 SINE MIR 66 191 -17 3252 96 20 0 chr5 34937181 34937619 -168147913 + L1PA13 LINE L1 5710 6156 -7 484 291 114 41 chr5 34937695 34938135 -168147397 - L1ME4a LINE L1 -171 5950 5479 363 248 203 33 chr5 34938832 34938985 -168146547 + MIR3 SINE MIR 15 193 -15 26 0 0 0 chr5 34939215 34939241 -168146291 + AT_rich Low_complexity Low_complexity 1 26 0 1854 162 6 16 chr5 34939294 34939609 -168145923 + AluJo SINE Alu 1 312 0 301 148 19 0 chr5 34939712 34939766 -168145766 - Charlie8 DNA MER1_type -992 1425 1371 327 237 65 36 chr5 34939772 34939911 -168145621 - Charlie8 DNA MER1_type -1897 520 378 641 165 23 38 chr5 34940397 34940530 -168145002 + L1MA9 LINE L1 6182 6312 0 577 251 186 65 chr5 34941200 34941586 -168143946 + MLT1J2 LTR MaLR 1 433 -17 24 53 0 0 chr5 34942841 34942879 -168142653 + AT_rich Low_complexity Low_complexity 1 38 0 216 200 0 0 chr5 34942933 34942983 -168142549 + (TATG)n Simple_repeat Simple_repeat 1 50 0 311 285 62 62 chr5 34942983 34943127 -168142405 + L1MC4 LINE L1 6595 6738 -1304 410 215 30 22 chr5 34943919 34944020 -168141512 + MIR SINE MIR 93 189 -65 1048 209 52 14 chr5 34944033 34944244 -168141288 + MER58A DNA MER1_type 6 224 0 2046 228 82 37 chr5 34945489 34946085 -168139447 + MLT1E3 LTR MaLR 1 623 -1 405 0 0 0 chr5 34946221 34946266 -168139266 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 687 305 109 28 chr5 34946370 34946923 -168138609 - L1ME LINE L1 -314 5856 5254 378 311 55 19 chr5 34946964 34947221 -168138311 - L1ME LINE L1 -978 5168 4903 1799 162 0 11 chr5 34949008 34949292 -168136240 + AluJo SINE Alu 1 281 -31 670 261 72 9 chr5 34949670 34949892 -168135640 - MIR SINE MIR -26 236 1 225 232 42 74 chr5 34950747 34950842 -168134690 + MIR SINE MIR 60 151 -57 558 251 162 22 chr5 34952218 34952406 -168133126 + L1ME4a LINE L1 5761 5921 -200 2009 132 53 71 chr5 34952406 34952800 -168132732 - MLT1B LTR MaLR -3 387 1 558 251 162 22 chr5 34952800 34952926 -168132606 + L1ME4a LINE L1 5921 6119 -2 431 259 193 0 chr5 34953531 34953719 -168131813 - MIR SINE MIR -21 241 20 200 180 180 33 chr5 34953714 34953775 -168131757 + L2 LINE L2 3144 3213 -59 * 293 317 32 32 chr5 34953877 34953912 -168131620 - MIR SINE MIR -76 186 152 2339 168 6 3 chr5 34953912 34954276 -168131256 - MLT1A1 LTR MaLR 0 365 1 293 317 32 32 chr5 34954276 34954363 -168131169 - MIR SINE MIR -109 153 64 279 0 0 0 chr5 34954418 34954449 -168131083 + (TC)n Simple_repeat Simple_repeat 2 32 0 201 300 98 71 chr5 34955207 34955399 -168130133 - L2 LINE L2 -337 2977 2771 867 173 0 0 chr5 34955399 34955532 -168130000 - FLAM_C SINE Alu 0 133 1 201 300 98 71 chr5 34955532 34955676 -168129856 - L2 LINE L2 -543 2771 2632 367 93 0 0 chr5 34955724 34955778 -168129754 + MADE1 DNA Mariner 27 80 0 2120 133 3 0 chr5 34956886 34957186 -168128346 + AluSx SINE Alu 1 301 -11 255 261 8 50 chr5 34957197 34957316 -168128216 + GA-rich Low_complexity Low_complexity 5 118 0 195 245 151 65 chr5 34957444 34957583 -168127949 + MIR3 SINE MIR 49 199 -9 373 309 111 0 chr5 34957594 34957756 -168127776 + MIR SINE MIR 2 181 -81 668 270 50 5 chr5 34958883 34959105 -168126427 + MIR SINE MIR 6 237 -25 184 200 0 25 chr5 34959073 34959113 -168126419 + L2 LINE L2 3251 3289 -24 * 974 70 78 0 chr5 34960031 34960160 -168125372 - MER85 DNA T2_type 0 139 1 343 281 86 16 chr5 34962017 34962145 -168123387 + L1MD3 LINE L1 6444 6580 -1415 970 201 142 46 chr5 34962146 34962383 -168123149 - Tigger7 DNA MER2_type 0 2491 2278 8350 77 21 9 chr5 34962383 34963442 -168122090 + MER11C LTR ERVK 1 1071 0 970 201 142 46 chr5 34963442 34963535 -168121997 - Tigger7 DNA MER2_type -213 2278 3 1440 206 48 93 chr5 34963538 34964062 -168121470 + L1MC4 LINE L1 6590 7089 -953 886 240 31 9 chr5 34964067 34964292 -168121240 + L1MC4a LINE L1 7163 7392 -416 1023 179 113 69 chr5 34964303 34964577 -168120955 - MSTB1 LTR MaLR -146 286 1 862 179 7 0 chr5 34964579 34964730 -168120802 + L1MC4 LINE L1 7475 7626 -416 192 300 33 17 chr5 34964954 34965014 -168120518 + L2 LINE L2 2995 3055 -217 2483 83 0 0 chr5 34965827 34966139 -168119393 + AluSp SINE Alu 1 312 -1 2061 134 0 10 chr5 34966419 34966717 -168118815 + AluSx SINE Alu 1 295 -17 195 244 44 0 chr5 34967327 34967372 -168118160 - MER5B DNA MER1_type -3 175 129 419 223 10 10 chr5 34967468 34967773 -168117759 + (TA)n Simple_repeat Simple_repeat 1 305 0 261 170 38 38 chr5 34967828 34967987 -168117545 + (TATATG)n Simple_repeat Simple_repeat 4 162 0 430 251 37 0 chr5 34968019 34968249 -168117283 + (TA)n Simple_repeat Simple_repeat 1 238 0 425 235 22 22 chr5 34968288 34968576 -168116956 + (TA)n Simple_repeat Simple_repeat 1 288 0 194 216 54 0 chr5 34969422 34969459 -168116073 - MIR SINE MIR -87 121 83 259 364 33 16 chr5 34969560 34969681 -168115851 - MIR SINE MIR -61 147 25 2392 101 0 0 chr5 34969757 34970065 -168115467 + AluY SINE Alu 1 308 -3 213 294 0 0 chr5 34970493 34970544 -168114988 + (CA)n Simple_repeat Simple_repeat 1 51 0 180 0 0 0 chr5 34970724 34970744 -168114788 + (CAA)n Simple_repeat Simple_repeat 2 21 0 564 262 168 0 chr5 34972392 34972541 -168112991 - MER5A DNA MER1_type 0 189 16 286 317 73 0 chr5 34972565 34972647 -168112885 - MIR SINE MIR -87 121 34 1382 203 59 17 chr5 34974346 34974519 -168111013 - AluJo SINE Alu -9 303 112 189 0 0 0 chr5 34974519 34974540 -168110992 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1382 203 59 17 chr5 34974540 34974656 -168110876 - AluJo SINE Alu -200 112 2 762 163 0 71 chr5 34975106 34975247 -168110285 + FLAM_C SINE Alu 7 137 -6 5242 163 10 29 chr5 34975248 34976217 -168109315 + L1MA9 LINE L1 5361 6311 -1 2090 230 72 23 chr5 34976338 34976994 -168108538 + L1M4 LINE L1 2346 3033 -3113 1794 187 0 3 chr5 34977002 34977312 -168108220 + AluJo SINE Alu 3 311 -1 13153 113 8 16 chr5 34977339 34980460 -168105072 + L1PA7 LINE L1 6 3114 -3347 2648 91 0 0 chr5 35030483 35030836 -168054696 + L1PA7 LINE L1 5034 5386 -1075 7115 55 6 8 chr5 35030836 35031707 -168053825 + L1PA7 LINE L1 5598 6469 0 8425 169 22 14 chr5 35031710 35034325 -168051207 + L1PB3 LINE L1 3521 6152 -2 224 29 0 29 chr5 35034326 35034360 -168051172 + (CA)n Simple_repeat Simple_repeat 2 34 0 227 266 9 18 chr5 35034393 35034502 -168051030 - L1M4 LINE L1 -3476 2670 2563 2278 137 134 11 chr5 35034527 35034908 -168050624 + MSTA LTR MaLR 1 428 0 5976 180 23 28 chr5 35034908 35035401 -168050131 + MSTA-int LTR MaLR 1 495 -1156 1162 146 151 0 chr5 35035401 35035600 -168049932 - MER30 DNA MER1_type 0 230 2 5976 180 23 28 chr5 35035600 35036216 -168049316 + MSTA-int LTR MaLR 495 1105 -546 5522 115 44 26 chr5 35036216 35037217 -168048315 - MER11B LTR ERVK -88 1148 1 659 140 9 9 chr5 35037225 35037339 -168048193 + MSTA-int LTR MaLR 1538 1651 0 2309 154 115 5 chr5 35037339 35037723 -168047809 + MSTA LTR MaLR 1 426 -2 1914 214 21 32 chr5 35037749 35038276 -168047256 + L1M4 LINE L1 3333 3853 -2293 4848 234 37 49 chr5 35038287 35038521 -168047011 + L1MC1 LINE L1 3077 3312 -3021 285 196 0 0 chr5 35038521 35038572 -168046960 + MSTA LTR MaLR 371 421 -7 4848 234 37 49 chr5 35038572 35038974 -168046558 + L1MC1 LINE L1 3312 3717 -2616 2401 96 0 10 chr5 35038974 35039287 -168046245 + AluSg SINE Alu 1 310 0 4848 234 37 49 chr5 35039287 35041538 -168043994 + L1MC1 LINE L1 3717 5846 -487 2003 129 0 0 chr5 35041545 35041816 -168043716 + AluSc SINE Alu 1 271 -38 2607 150 33 7 chr5 35041916 35042342 -168043190 + L1MC1 LINE L1 5897 6333 0 3763 219 61 58 chr5 35042342 35043522 -168042010 + L1M4 LINE L1 3843 5025 -1121 1290 185 20 16 chr5 35043527 35043776 -168041756 + L1MD1 LINE L1 5993 6242 0 243 150 62 113 chr5 35045430 35045510 -168040022 - MER5B DNA MER1_type 0 178 103 622 269 0 28 chr5 35045533 35045715 -168039817 + MER5B DNA MER1_type 1 177 -1 540 227 0 133 chr5 35045724 35045785 -168039747 - MER5A DNA MER1_type 0 189 122 1165 191 30 4 chr5 35045785 35046015 -168039517 + L1MB8 LINE L1 5933 6168 -10 540 227 0 133 chr5 35046015 35046156 -168039376 - MER5A DNA MER1_type -67 122 14 989 245 19 5 chr5 35047187 35047403 -168038129 - MER58A DNA MER1_type -5 219 1 474 193 12 0 chr5 35047403 35047486 -168038046 - MIR SINE MIR -91 171 88 312 319 98 34 chr5 35048355 35048621 -168036911 - L2 LINE L2 -2343 971 689 363 228 52 7 chr5 35048738 35048874 -168036658 + GA-rich Low_complexity Low_complexity 3 144 0 1713 191 84 31 chr5 35049031 35049449 -168036083 + MLT1D LTR MaLR 61 500 -5 309 288 147 40 chr5 35051705 35051882 -168033650 - MIR SINE MIR -62 200 5 255 189 0 0 chr5 35051894 35051947 -168033585 + (CA)n Simple_repeat Simple_repeat 2 54 0 2120 123 3 0 chr5 35052665 35052958 -168032574 - AluSx SINE Alu -18 294 1 833 177 0 15 chr5 35053332 35053462 -168032070 - FLAM_C SINE Alu -14 129 2 193 269 51 39 chr5 35053565 35053643 -168031889 + L3 LINE CR1 1484 1562 -15 767 90 0 0 chr5 35054468 35054568 -168030964 + U6 snRNA snRNA 2 101 -6 1991 110 38 10 chr5 35054586 35054876 -168030656 + AluSx SINE Alu 1 298 -14 405 308 7 20 chr5 35055669 35055815 -168029717 - MIR SINE MIR 0 262 119 419 256 108 0 chr5 35056209 35056338 -168029194 + MIR SINE MIR 120 262 0 789 103 0 0 chr5 35057131 35057238 -168028294 - AluY SINE Alu 0 311 205 240 143 0 0 chr5 35059275 35059331 -168026201 + (A)n Simple_repeat Simple_repeat 1 56 0 1957 103 4 8 chr5 35059773 35060066 -168025466 + AluSp SINE Alu 38 313 0 2006 127 0 36 chr5 35060753 35061061 -168024471 + AluSp SINE Alu 1 297 -16 734 294 20 0 chr5 35061692 35061893 -168023639 - MIR SINE MIR 0 262 58 2439 264 124 25 chr5 35063103 35064285 -168021247 - L2 LINE L2 -4 3309 2004 1564 161 29 127 chr5 35064796 35065182 -168020350 - Tigger3(Golem) DNA MER2_type 0 3029 1 1033 250 66 28 chr5 35065214 35065606 -168019926 - L1ME1 LINE L1 -5 6161 5755 1818 170 0 20 chr5 35065813 35066113 -168019419 + AluJo SINE Alu 1 294 -18 1670 179 24 14 chr5 35067519 35067816 -168017716 + AluJb SINE Alu 1 300 -12 907 153 0 15 chr5 35067835 35067972 -168017560 + AluJo SINE Alu 1 135 -177 4092 256 55 47 chr5 35068179 35069812 -168015720 + L1ME2 LINE L1 36 1681 -4715 4466 198 100 8 chr5 35069840 35071034 -168014498 - L1PBa LINE L1 -5410 1453 6 605 251 29 6 chr5 35071039 35071210 -168014322 + L1ME2 LINE L1 4899 5073 -1142 2206 129 0 0 chr5 35071211 35071513 -168014019 + AluSq SINE Alu 1 302 -11 2639 198 34 17 chr5 35071685 35071795 -168013737 + L1ME2 LINE L1 5162 5269 -966 2331 121 0 0 chr5 35071795 35072102 -168013430 + AluSg SINE Alu 1 307 -3 195 42 0 0 chr5 35072102 35072126 -168013406 + (GGGGA)n Simple_repeat Simple_repeat 5 28 0 2639 198 34 17 chr5 35072126 35072742 -168012790 + L1ME2 LINE L1 5268 5895 -340 4310 82 29 42 chr5 35072742 35073784 -168011748 + MER11A LTR ERVK 1 1266 0 400 219 79 112 chr5 35073788 35074003 -168011529 + L1ME2 LINE L1 5903 6110 -123 691 125 0 0 chr5 35074283 35074387 -168011145 - L1M2 LINE L1 -866 5434 5331 3660 159 16 22 chr5 35074388 35075073 -168010459 + L1MA8 LINE L1 5609 6289 -2 453 305 20 13 chr5 35075415 35075566 -168009966 + MER5B DNA MER1_type 1 152 -26 939 182 39 0 chr5 35075868 35076049 -168009483 - MER5A DNA MER1_type 0 189 2 1543 266 23 10 chr5 35077605 35078090 -168007442 - L1M4 LINE L1 -3000 3146 2656 238 195 171 12 chr5 35078281 35078363 -168007169 + MLT1F1 LTR MaLR 1 95 -559 1133 257 169 38 chr5 35078374 35078818 -168006714 + MLT1F1 LTR MaLR 66 567 0 279 348 66 23 chr5 35078827 35079160 -168006372 - L2 LINE L2 -743 2571 2163 220 298 48 0 chr5 35079094 35079178 -168006354 + MIR SINE MIR 134 221 -41 * 1225 235 35 65 chr5 35079194 35079442 -168006090 + MLT1B LTR MaLR 1 234 -156 2630 153 19 0 chr5 35079442 35079860 -168005672 - MSTB LTR MaLR 0 426 1 1225 235 35 65 chr5 35079860 35080011 -168005521 + MLT1B LTR MaLR 234 388 -2 4310 100 5 8 chr5 35080685 35081303 -168004229 - L1PB1 LINE L1 0 6151 5536 458 228 14 35 chr5 35081337 35081482 -168004050 - L1 LINE L1 -2593 4269 4128 3299 149 33 4 chr5 35081584 35082405 -168003127 - L1PA7 LINE L1 -271 5883 2986 2524 125 11 3 chr5 35082406 35082767 -168002765 + THE1B LTR MaLR 1 364 0 2036 77 4 7 chr5 35082767 35083040 -168002492 + THE1B-int LTR MaLR 1 272 -1308 2211 68 0 0 chr5 35083052 35083331 -168002201 + THE1B-int LTR MaLR 1302 1580 0 2597 100 14 8 chr5 35083333 35083693 -168001839 + THE1B LTR MaLR 3 364 0 16010 130 47 46 chr5 35083693 35087393 -167998139 - L1PBa LINE L1 -3157 3705 1 257 35 0 0 chr5 35088340 35088369 -167997163 + U2 snRNA snRNA 5 33 -155 639 333 87 30 chr5 35088783 35089233 -167996299 + L2 LINE L2 2248 2734 -580 1372 284 30 40 chr5 35089233 35089729 -167995803 - LTR16C LTR ERVL 0 491 1 639 333 87 30 chr5 35089729 35089807 -167995725 + L2 LINE L2 2734 2806 -508 799 294 8 32 chr5 35090012 35090260 -167995272 - MLT2F LTR ERVL -234 429 188 4323 287 59 24 chr5 35090300 35091850 -167993682 - ERVL LTR ERVL -3385 2379 775 859 276 105 20 chr5 35091857 35092296 -167993236 + HAL1 LINE L1 1933 2408 -99 279 256 60 17 chr5 35092308 35092425 -167993107 - MER5B DNA MER1_type -37 141 20 21 0 0 0 chr5 35092459 35092480 -167993052 + AT_rich Low_complexity Low_complexity 1 21 0 2283 112 3 3 chr5 35092851 35093163 -167992369 - AluSx SINE Alu 0 312 1 215 320 83 51 chr5 35093172 35093328 -167992204 - L2 LINE L2 -210 3062 2902 2191 100 0 0 chr5 35093414 35093747 -167991785 + AluSg SINE Alu 1 333 0 2105 116 3 7 chr5 35094041 35094335 -167991197 + AluSc SINE Alu 1 293 -16 3226 173 18 71 chr5 35094509 35095239 -167990293 - LTR8 LTR ERV1 0 691 1 335 316 30 42 chr5 35095470 35095638 -167989894 - MER5A DNA MER1_type 0 189 24 226 200 0 0 chr5 35095665 35095705 -167989827 - MIR SINE MIR -56 152 113 4905 73 26 3 chr5 35095710 35096355 -167989177 - PABL_A LTR ERV1 0 660 1 849 159 49 102 chr5 35097133 35097359 -167988173 + MER20 DNA MER1_type 1 214 -5 263 247 71 91 chr5 35097675 35097829 -167987703 + L2 LINE L2 1873 2023 -1291 506 156 89 0 chr5 35097831 35097921 -167987611 + MER4A LTR ERV1 1 98 -566 1827 117 11 80 chr5 35097921 35098295 -167987237 + MER4A LTR ERV1 261 664 0 675 326 138 26 chr5 35098454 35099196 -167986336 + L2 LINE L2 2153 2977 -337 2032 158 0 0 chr5 35099508 35099806 -167985726 - AluSx SINE Alu -14 298 1 208 321 0 0 chr5 35099860 35099913 -167985619 + L2 LINE L2 3196 3248 -24 898 250 10 0 chr5 35099993 35100193 -167985339 - MLT1D LTR MaLR -5 500 299 399 190 30 80 chr5 35100189 35100289 -167985243 - MLT1D LTR MaLR -409 96 2 * 183 366 141 0 chr5 35100354 35100496 -167985036 + MIR3 SINE MIR 19 180 -28 810 108 7 20 chr5 35101640 35101788 -167983744 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 22 35 0 0 chr5 35104722 35104751 -167980781 + GC_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr5 35105929 35105954 -167979578 + AT_rich Low_complexity Low_complexity 1 25 0 262 332 62 62 chr5 35107356 35107600 -167977932 - L2 LINE L2 -10 3262 3019 180 0 0 0 chr5 35107983 35108003 -167977529 + (TG)n Simple_repeat Simple_repeat 1 20 0 777 306 74 46 chr5 35109076 35109511 -167976021 + MER115 DNA AcHobo 4 450 -243 540 250 172 16 chr5 35109568 35109760 -167975772 + MIR SINE MIR 35 256 -6 1703 187 0 10 chr5 35109780 35110074 -167975458 - AluJb SINE Alu -18 294 4 296 271 187 13 chr5 35110092 35110247 -167975285 - MIR SINE MIR -75 187 6 200 221 94 102 chr5 35110252 35110379 -167975153 + L3 LINE CR1 1155 1280 -297 2367 97 0 0 chr5 35110878 35111176 -167974356 + AluY SINE Alu 1 298 -13 734 214 91 16 chr5 35111614 35111801 -167973731 - MER58B DNA MER1_type -4 337 137 716 169 14 14 chr5 35111827 35111969 -167973563 - MER58B DNA MER1_type -163 178 37 247 284 135 34 chr5 35112311 35112459 -167973073 - MIR SINE MIR 0 262 100 304 270 143 36 chr5 35112459 35112655 -167972877 + L1MC4a LINE L1 5851 6067 -1741 242 258 0 2 chr5 35112741 35112810 -167972722 - MIR SINE MIR -102 106 40 182 313 45 0 chr5 35113535 35113602 -167971930 + MIR SINE MIR 82 151 -111 180 0 0 0 chr5 35113659 35113679 -167971853 + (GGCTG)n Simple_repeat Simple_repeat 5 24 0 425 295 26 47 chr5 35114663 35114856 -167970676 + MIR SINE MIR 60 248 -14 291 278 21 62 chr5 35116045 35116189 -167969343 - L2 LINE L2 -236 3036 2899 1634 184 23 29 chr5 35116588 35116897 -167968635 + AluJo SINE Alu 1 307 -5 180 246 49 16 chr5 35116939 35117000 -167968532 + MIR3 SINE MIR 141 203 -5 298 270 34 11 chr5 35117800 35117889 -167967643 - L3 LINE CR1 -810 767 677 215 287 58 11 chr5 35118703 35118790 -167966742 + L2 LINE L2 2945 3035 -237 698 221 13 19 chr5 35118814 35118972 -167966560 - FRAM SINE Alu -19 157 1 7437 8 0 1 chr5 35119375 35120196 -167965336 - L1HS LINE L1 0 6155 5336 5257 32 0 0 chr5 35120195 35120819 -167964713 + L1P LINE L1 1941 2564 -3582 * 2530 186 84 55 chr5 35121576 35122182 -167963350 + MLT1E2 LTR MaLR 3 626 0 273 29 0 0 chr5 35122325 35122359 -167963173 + (CA)n Simple_repeat Simple_repeat 2 35 0 8869 121 8 5 chr5 35122359 35123651 -167961881 + HSMAR2 DNA Mariner 6 1301 -1 797 253 0 0 chr5 35125188 35125358 -167960174 - FRAM SINE Alu -1 175 6 322 279 241 19 chr5 35125757 35126019 -167959513 - L1ME4a LINE L1 -28 6093 5774 296 65 152 0 chr5 35126737 35126783 -167958749 + L1MC3 LINE L1 7519 7571 -214 * 1143 110 58 0 chr5 35126781 35126954 -167958578 - L1P5 LINE L1 -507 5644 5462 753 141 16 0 chr5 35126968 35127089 -167958443 - L1PB1 LINE L1 -360 5791 5669 748 92 5 118 chr5 35127081 35127276 -167958256 + L1PB1 LINE L1 5784 5956 -195 * 801 165 24 58 chr5 35127562 35127768 -167957764 + L1MD3 LINE L1 7765 7963 -32 207 286 143 0 chr5 35127822 35127920 -167957612 + L2 LINE L2 3201 3312 -1 260 322 98 53 chr5 35128290 35128462 -167957070 + L2 LINE L2 2935 3098 -174 1573 254 18 78 chr5 35128462 35128951 -167956581 + LTR16B LTR ERVL 5 464 0 260 322 98 53 chr5 35128951 35129137 -167956395 + L2 LINE L2 3098 3270 -2 272 256 206 38 chr5 35129386 35129546 -167955986 - MIR SINE MIR -24 238 52 898 226 51 0 chr5 35129746 35129941 -167955591 + MER3 DNA MER1_type 1 205 -4 392 239 263 34 chr5 35130941 35131146 -167954386 + MIR SINE MIR 2 253 -9 385 174 20 92 chr5 35132610 35132708 -167952824 - MER20 DNA MER1_type -128 91 1 1549 12 0 0 chr5 35133218 35133387 -167952145 - AluYb8 SINE Alu -4 314 146 518 261 150 7 chr5 35134151 35134304 -167951228 - MER5A DNA MER1_type -6 183 9 297 0 0 0 chr5 35134576 35134609 -167950923 + (CA)n Simple_repeat Simple_repeat 2 34 0 198 0 0 0 chr5 35135825 35135847 -167949685 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 360 0 0 0 chr5 35135846 35135886 -167949646 + (TG)n Simple_repeat Simple_repeat 1 40 0 415 284 18 0 chr5 35135899 35136008 -167949524 - L2 LINE L2 0 3313 3203 35 0 0 0 chr5 35136064 35136099 -167949433 + AT_rich Low_complexity Low_complexity 1 35 0 309 333 37 0 chr5 35137204 35137312 -167948220 + LTR16C LTR ERVL 376 487 -4 399 113 0 0 chr5 35137328 35137390 -167948142 + (TTGG)n Simple_repeat Simple_repeat 2 63 0 370 266 9 37 chr5 35137395 35137504 -167948028 + MIR3 SINE MIR 61 166 -42 * 433 291 34 27 chr5 35137495 35137643 -167947889 - L2 LINE L2 -4 3309 3161 1346 150 89 112 chr5 35138225 35138421 -167947111 - AluJb SINE Alu -5 307 119 2166 128 3 0 chr5 35138421 35138718 -167946814 - AluSx SINE Alu -12 300 3 1346 150 89 112 chr5 35138718 35138835 -167946697 - AluJb SINE Alu -193 119 1 228 311 0 0 chr5 35142441 35142502 -167943030 + MLT1L LTR MaLR 19 79 -536 271 339 63 24 chr5 35142558 35142685 -167942847 + MLT1L LTR MaLR 198 329 -286 280 189 84 42 chr5 35142853 35142948 -167942584 + MLT1J LTR MaLR 405 503 -8 1533 208 53 45 chr5 35143723 35144103 -167941429 + MLT1B LTR MaLR 3 385 -5 296 264 57 28 chr5 35144430 35144536 -167940996 - L2 LINE L2 -1 3312 3204 300 365 33 40 chr5 35144557 35144813 -167940719 - L2 LINE L2 -439 2875 2620 5660 129 48 9 chr5 35144813 35145682 -167939850 + MER4D LTR ERV1 1 903 0 300 365 33 40 chr5 35145682 35145729 -167939803 - L2 LINE L2 -694 2620 2574 5236 142 69 9 chr5 35145823 35146675 -167938857 - MER4D LTR ERV1 0 903 1 242 206 136 141 chr5 35146939 35147018 -167938514 + MIR SINE MIR 52 130 -132 824 252 19 19 chr5 35147018 35147228 -167938304 + MER63A DNA MER1_type 1 210 0 242 206 136 141 chr5 35147228 35147332 -167938200 + MIR SINE MIR 130 234 -28 713 267 35 110 chr5 35147369 35147889 -167937643 - L2 LINE L2 -16 3297 2817 467 258 13 63 chr5 35148576 35148735 -167936797 + MER5A DNA MER1_type 39 189 0 1059 168 56 22 chr5 35149376 35149608 -167935924 + L1MB7 LINE L1 5929 6168 -16 685 207 43 37 chr5 35149760 35149948 -167935584 - MER5A DNA MER1_type 0 189 1 231 259 94 12 chr5 35149986 35150071 -167935461 - L1ME LINE L1 -297 5824 5733 472 306 59 11 chr5 35153099 35153285 -167932247 + L2 LINE L2 3115 3309 -4 641 250 83 36 chr5 35153322 35153514 -167932018 + LTR33A LTR ERVL 1 201 -322 617 222 98 15 chr5 35153548 35153751 -167931781 + LTR33A LTR ERVL 292 511 -12 1353 178 8 23 chr5 35153805 35154064 -167931468 - AluJo SINE Alu -12 300 46 232 356 35 23 chr5 35154097 35154184 -167931348 + MIR SINE MIR 13 100 -162 2366 212 46 22 chr5 35154199 35154747 -167930785 + MER119 DNA MER1_type 7 567 -16 201 237 0 0 chr5 35154748 35154786 -167930746 + MIR SINE MIR 109 146 -62 235 326 53 0 chr5 35154997 35155092 -167930440 + MLT1L LTR MaLR 166 265 -350 23 33 0 0 chr5 35156665 35156695 -167928837 + AT_rich Low_complexity Low_complexity 1 30 0 666 147 18 9 chr5 35156813 35156922 -167928610 + FLAM_A SINE Alu 1 110 -32 245 29 29 0 chr5 35156925 35156959 -167928573 + (TCCA)n Simple_repeat Simple_repeat 4 38 0 813 100 0 0 chr5 35158514 35158656 -167926876 - AluY SINE Alu 0 316 175 2109 92 0 7 chr5 35158660 35158969 -167926563 - AluSg SINE Alu 0 307 1 333 306 28 39 chr5 35158975 35159155 -167926377 + L1MC4a LINE L1 5707 5884 -1924 44 0 0 0 chr5 35159155 35159199 -167926333 + AT_rich Low_complexity Low_complexity 1 44 0 1867 156 0 7 chr5 35159217 35159512 -167926020 + AluJb SINE Alu 2 294 -18 3932 164 21 26 chr5 35159681 35160399 -167925133 - L1MB3 LINE L1 -2 6181 5468 2078 97 0 4 chr5 35160405 35160674 -167924858 + AluSx SINE Alu 1 268 -44 2133 106 7 0 chr5 35160983 35161267 -167924265 - AluSx SINE Alu -26 286 1 4506 152 22 27 chr5 35161738 35162475 -167923057 + MER44D DNA MER2_type 1 605 0 3469 183 139 61 chr5 35162522 35163293 -167922239 + L1M4 LINE L1 14 876 -5666 1740 171 3 37 chr5 35163293 35163614 -167921918 + AluJo SINE Alu 1 310 -2 3469 183 139 61 chr5 35163614 35163808 -167921724 + L1M4 LINE L1 876 1054 -5488 228 219 55 82 chr5 35164331 35164404 -167921128 + L1PBa LINE L1 1339 1409 -5454 362 188 78 5 chr5 35165892 35165999 -167919533 + L1MC5 LINE L1 7813 8042 0 207 204 0 0 chr5 35166720 35166764 -167918768 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 1154 123 25 0 chr5 35167311 35167474 -167918058 - AluSg/x SINE Alu -18 294 128 2265 140 31 58 chr5 35168005 35168419 -167917113 - MER57A LTR ERV1 0 403 1 252 136 45 0 chr5 35168475 35168519 -167917013 + LTR65 LTR ERV1 344 389 -280 2091 122 3 3 chr5 35168810 35169104 -167916428 - AluSx SINE Alu -18 294 1 209 246 237 37 chr5 35169796 35170145 -167915387 + L2 LINE L2 1876 2369 -945 1055 189 56 36 chr5 35170159 35170408 -167915124 - MIR SINE MIR -1 261 8 242 346 149 14 chr5 35170443 35170651 -167914881 + L2 LINE L2 2440 2675 -639 238 235 147 0 chr5 35170707 35170775 -167914757 + MIR SINE MIR 63 140 -122 279 57 0 0 chr5 35171091 35171126 -167914406 - MADE1 DNA Mariner -45 35 1 189 152 0 0 chr5 35173548 35173581 -167911951 + MIR SINE MIR 174 206 -56 182 208 83 0 chr5 35173602 35173650 -167911882 - L2 LINE L2 0 3272 3221 198 308 202 43 chr5 35173655 35174051 -167911481 - L2 LINE L2 -601 2713 2255 374 262 119 122 chr5 35174570 35175039 -167910493 + L1M2 LINE L1 677 1144 -5705 3811 139 26 3 chr5 35175853 35176869 -167908663 + L1MA4A LINE L1 4616 5656 -644 2765 52 0 39 chr5 35176869 35177251 -167908281 - MER11A LTR ERVK 0 1266 900 3586 139 62 21 chr5 35177251 35177701 -167907831 + L1MA4A LINE L1 5657 6141 -162 1404 205 10 44 chr5 35177701 35177836 -167907696 + AluJo SINE Alu 1 139 -186 1530 102 0 0 chr5 35177836 35178032 -167907500 + AluSg/x SINE Alu 100 295 -17 1404 205 10 44 chr5 35178032 35178231 -167907301 + AluJo SINE Alu 139 325 0 3586 139 62 21 chr5 35178231 35178396 -167907136 + L1MA4A LINE L1 6141 6298 -5 1675 142 81 72 chr5 35178402 35178761 -167906771 + MLT1B LTR MaLR 27 388 -2 2041 130 30 0 chr5 35179169 35179470 -167906062 + AluSx SINE Alu 1 310 -2 527 220 193 62 chr5 35179932 35180293 -167905239 + L1MC5 LINE L1 6906 7244 -717 1778 156 74 52 chr5 35180301 35180572 -167904960 - MLT1A2 LTR MaLR 0 374 91 2324 116 35 27 chr5 35180572 35180944 -167904588 - THE1C LTR MaLR 0 375 1 1778 156 74 52 chr5 35180944 35181038 -167904494 - MLT1A2 LTR MaLR -283 91 1 287 267 133 13 chr5 35181044 35181194 -167904338 + L1MC4 LINE L1 7328 7495 -547 * 311 205 150 24 chr5 35181168 35181295 -167904237 + L1MC5 LINE L1 7303 7445 -516 432 238 38 38 chr5 35181298 35181483 -167904049 + L1MC5 LINE L1 7492 7676 -285 594 171 0 0 chr5 35181535 35181623 -167903909 - AluJ/FLAM SINE Alu -223 89 2 652 256 32 127 chr5 35181690 35182093 -167903439 + MLT1E-int LTR MaLR 1003 1367 -4 2030 256 71 14 chr5 35182105 35182655 -167902877 + MLT1E LTR MaLR 13 593 0 411 258 33 8 chr5 35182655 35182775 -167902757 - MIR SINE MIR -62 200 78 429 258 68 94 chr5 35183070 35183527 -167902005 + MER65A LTR ERV1 1 445 0 553 264 155 47 chr5 35183910 35183972 -167901560 + L1ME4a LINE L1 5519 5573 -548 2133 216 81 49 chr5 35183972 35184588 -167900944 + MER92B LTR ERV1 1 636 0 553 264 155 47 chr5 35184588 35185041 -167900491 + L1ME4a LINE L1 5573 6090 -31 34 0 0 0 chr5 35185042 35185076 -167900456 + AT_rich Low_complexity Low_complexity 1 34 0 2061 116 10 3 chr5 35185649 35185943 -167899589 + AluSq SINE Alu 1 296 -17 292 237 64 77 chr5 35187813 35187969 -167897563 + MLT1J1 LTR MaLR 289 442 -4 2936 75 0 11 chr5 35188379 35188750 -167896782 + L1PA8 LINE L1 5806 6172 0 298 198 107 66 chr5 35189417 35189538 -167895994 + MLT1J1 LTR MaLR 4 129 -317 242 29 29 0 chr5 35189632 35189667 -167895865 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2498 55 0 0 chr5 35189669 35189960 -167895572 - AluY SINE Alu -20 291 1 291 114 0 0 chr5 35193262 35193306 -167892226 + (A)n Simple_repeat Simple_repeat 1 44 0 610 277 96 36 chr5 35193758 35194225 -167891307 + L1MC4a LINE L1 5385 5822 -2173 1661 162 17 30 chr5 35194225 35194527 -167891005 + AluSx SINE Alu 6 303 -9 610 277 96 36 chr5 35194527 35194775 -167890757 + L1MC4a LINE L1 5822 7988 -7 2390 65 0 0 chr5 35194782 35195074 -167890458 - AluY SINE Alu -19 292 1 288 212 0 0 chr5 35195432 35195498 -167890034 + CT-rich Low_complexity Low_complexity 4 69 0 245 238 89 10 chr5 35195766 35195867 -167889665 + L1ME LINE L1 5709 5817 -304 269 208 69 0 chr5 35196003 35196075 -167889457 - MER103 DNA DNA -63 103 27 995 128 0 0 chr5 35196109 35196242 -167889290 - FLAM_C SINE Alu 0 133 1 3628 70 2 0 chr5 35197450 35197919 -167887613 + L1PA13 LINE L1 5708 6177 0 1818 119 11 8 chr5 35198353 35198613 -167886919 + AluSx SINE Alu 1 261 -51 185 293 17 0 chr5 35198698 35198756 -167886776 - MIR SINE MIR -66 142 84 1949 150 3 10 chr5 35199314 35199614 -167885918 + AluSx SINE Alu 1 298 -14 516 275 89 44 chr5 35200478 35200682 -167884850 + L1ME4a LINE L1 5672 5866 -255 1609 204 0 17 chr5 35200682 35200981 -167884551 + AluJb SINE Alu 1 294 -18 516 275 89 44 chr5 35200981 35201205 -167884327 + L1ME4a LINE L1 5866 6119 -2 889 179 46 15 chr5 35203162 35203358 -167882174 - L1MA8 LINE L1 -7 6284 6083 2255 102 0 3 chr5 35203472 35203767 -167881765 + AluSx SINE Alu 1 294 -18 216 317 24 0 chr5 35204090 35204172 -167881360 + GA-rich Low_complexity Low_complexity 1 84 0 290 278 103 10 chr5 35204978 35205075 -167880457 + MER39 LTR ERV1 1 106 -601 1597 173 108 6 chr5 35205267 35205602 -167879930 + LTR48 LTR ERV1 84 452 -335 4238 136 33 13 chr5 35205607 35206304 -167879228 + MER50 LTR ERV1 1 711 -23 434 213 11 34 chr5 35206345 35206531 -167879001 + LTR48B LTR ERV1 429 644 0 22 56 0 0 chr5 35207748 35207784 -167877748 + AT_rich Low_complexity Low_complexity 1 36 0 201 286 36 0 chr5 35208557 35208613 -167876919 + MIR SINE MIR 38 95 -113 230 0 33 0 chr5 35209551 35209581 -167875951 + (CAA)n Simple_repeat Simple_repeat 2 32 0 855 147 0 15 chr5 35210757 35210893 -167874639 + AluJo SINE Alu 1 134 -178 180 250 42 56 chr5 35210939 35211011 -167874521 - L3 LINE CR1 -525 1052 982 796 211 78 12 chr5 35212081 35212247 -167873285 + MER5B DNA MER1_type 2 178 0 388 288 217 0 chr5 35212280 35212492 -167873040 - MIR SINE MIR 0 262 5 416 204 46 37 chr5 35212660 35212768 -167872764 + MLT1C LTR MaLR 1 109 -358 935 242 21 33 chr5 35212911 35213151 -167872381 + MER93a LTR ERV1 166 402 0 * 2014 168 42 21 chr5 35213151 35213523 -167872009 + MLT1C LTR MaLR 86 465 -2 204 40 0 0 chr5 35215063 35215088 -167870444 + (TG)n Simple_repeat Simple_repeat 1 25 0 360 0 0 0 chr5 35215091 35215131 -167870401 + (GA)n Simple_repeat Simple_repeat 1 40 0 394 165 24 2 chr5 35215173 35215262 -167870270 - LTR50 LTR ERVL 0 795 435 505 245 199 25 chr5 35215268 35215675 -167869857 - LTR50 LTR ERVL -184 611 2 570 257 41 0 chr5 35215989 35216172 -167869360 + LTR50 LTR ERVL 326 604 -191 1975 192 11 6 chr5 35216469 35216823 -167868709 - MLT2D LTR ERVL -51 363 8 2841 146 49 0 chr5 35217283 35217714 -167867818 + LTR47A LTR ERVL 1 452 0 495 230 224 50 chr5 35217794 35218137 -167867395 + MLT1L LTR MaLR 172 574 -41 362 259 153 48 chr5 35218551 35218779 -167866753 + MLT1J2 LTR MaLR 74 325 -125 993 141 0 0 chr5 35218808 35218957 -167866575 + AluSg/x SINE Alu 143 291 -21 289 169 34 0 chr5 35218973 35219032 -167866500 + MLT1J1 LTR MaLR 367 427 -19 306 293 88 28 chr5 35219111 35219292 -167866240 + L2 LINE L2 3121 3312 -1 600 236 117 60 chr5 35219294 35219546 -167865986 + MIR SINE MIR 3 262 0 420 295 0 9 chr5 35220539 35220644 -167864888 - MIR SINE MIR -89 119 16 284 284 80 0 chr5 35220804 35220892 -167864640 + MIR3 SINE MIR 3 97 -111 1068 231 57 0 chr5 35221187 35221399 -167864133 - MER58A DNA MER1_type 0 224 1 257 270 56 40 chr5 35221729 35221855 -167863677 - LTR67 LTR ERVL -2 555 428 387 169 0 0 chr5 35223211 35223282 -167862250 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 438 20 0 0 chr5 35223282 35223333 -167862199 + (GA)n Simple_repeat Simple_repeat 2 52 0 1738 169 14 4 chr5 35223329 35223608 -167861924 - AluJb SINE Alu -30 282 1 1816 151 48 65 chr5 35225876 35226170 -167859362 - MLT1B LTR MaLR 0 390 103 1953 176 14 6 chr5 35226170 35226527 -167859005 - MLT1A1 LTR MaLR -2 363 4 1816 151 48 65 chr5 35226527 35226629 -167858903 - MLT1B LTR MaLR -287 103 1 1829 143 20 0 chr5 35227000 35227293 -167858239 - Tigger3(Golem) DNA MER2_type -1 3028 2730 2048 142 51 20 chr5 35227293 35227646 -167857886 - THE1B LTR MaLR 0 364 1 10025 100 3 0 chr5 35227646 35228977 -167856555 - THE1B-int LTR MaLR 0 1580 246 1191 65 0 13 chr5 35228977 35229132 -167856400 - HERV17 LTR ERV1 -6936 1690 1538 5608 86 3 55 chr5 35229299 35230190 -167855342 - HERV17 LTR ERV1 -7078 1548 704 5492 73 1 1 chr5 35230389 35231073 -167854459 - HERV17 LTR ERV1 -7921 705 22 3524 133 15 4 chr5 35231095 35231614 -167853918 - LTR17 LTR ERV1 0 780 256 575 147 20 0 chr5 35231615 35231717 -167853815 - MLT2D LTR ERVL -213 201 98 3539 137 28 5 chr5 35231749 35232184 -167853348 + L1PA16 LINE L1 5045 5507 -659 1877 151 0 13 chr5 35232184 35232488 -167853044 + AluSq SINE Alu 1 300 -13 3539 137 28 5 chr5 35232488 35232818 -167852714 + L1PA16 LINE L1 5507 5828 -338 1971 170 15 0 chr5 35232826 35233168 -167852364 - MER50 LTR ERV1 -387 347 1 254 189 61 61 chr5 35233191 35233323 -167852209 + L1MC5 LINE L1 7460 7591 -370 26 82 0 0 chr5 35233414 35233475 -167852057 + AT_rich Low_complexity Low_complexity 1 61 0 4573 115 6 1 chr5 35233489 35234150 -167851382 - THE1B-int LTR MaLR -916 664 1 2198 110 51 28 chr5 35234150 35234506 -167851026 - THE1B LTR MaLR 0 364 1 275 220 95 71 chr5 35234508 35234676 -167850856 + L1MC5 LINE L1 7751 7922 -39 191 287 58 23 chr5 35234878 35234965 -167850567 - L2 LINE L2 0 3272 3183 294 29 0 0 chr5 35235329 35235364 -167850168 + (GA)n Simple_repeat Simple_repeat 2 36 0 414 332 69 43 chr5 35235997 35236301 -167849231 + L2 LINE L2 3002 3313 0 280 198 37 49 chr5 35236845 35236926 -167848606 + MLT1J1 LTR MaLR 1 80 -366 259 306 20 20 chr5 35237049 35237147 -167848385 + MLT1J1 LTR MaLR 278 375 -71 630 227 0 8 chr5 35238961 35239089 -167846443 - FLAM_C SINE Alu -16 127 1 629 25 0 12 chr5 35239163 35239243 -167846289 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 2499 50 0 3 chr5 35239859 35240157 -167845375 + AluY SINE Alu 1 297 -14 308 285 117 15 chr5 35240856 35240993 -167844539 - MIR SINE MIR -2 260 110 1890 237 41 14 chr5 35241073 35241580 -167843952 + MER90 LTR ERV1 92 612 -2 2904 216 20 14 chr5 35242380 35242689 -167842843 + L1MB3 LINE L1 5468 5774 -409 252 0 0 0 chr5 35242689 35242717 -167842815 + (TG)n Simple_repeat Simple_repeat 2 29 0 2904 216 20 14 chr5 35242717 35243114 -167842418 + L1MB3 LINE L1 5774 6178 -5 1875 162 44 16 chr5 35245119 35245484 -167840048 - THE1C LTR MaLR 0 375 1 912 180 32 0 chr5 35246156 35246345 -167839187 - L1M2 LINE L1 -673 5639 5445 2445 189 31 17 chr5 35246353 35246930 -167838602 + L1MA10 LINE L1 5742 6326 -8 381 357 7 0 chr5 35247109 35247252 -167838280 - MIR SINE MIR -106 156 13 290 301 130 8 chr5 35247805 35247928 -167837604 + MIR SINE MIR 2 139 -123 230 343 39 20 chr5 35249810 35249912 -167835620 - MIR SINE MIR -135 127 24 382 306 107 0 chr5 35249992 35250244 -167835288 - MER20B DNA MER1_type -1 782 504 337 296 39 34 chr5 35250629 35250835 -167834697 - L1ME4a LINE L1 -161 5960 5754 3666 121 2 34 chr5 35251490 35251799 -167833733 - L1P LINE L1 -842 5304 5023 2383 72 0 16 chr5 35251799 35252105 -167833427 - AluY SINE Alu -10 301 1 3666 121 2 34 chr5 35252105 35252415 -167833117 - L1P LINE L1 -1123 5023 4705 6639 62 0 2 chr5 35252415 35253263 -167832269 + L1PA7 LINE L1 5308 6153 -1 225 346 10 10 chr5 35253930 35254031 -167831501 - MLT1I LTR MaLR -271 138 38 1511 177 26 39 chr5 35254381 35254692 -167830840 - AluJb SINE Alu -5 307 1 24 32 0 0 chr5 35255278 35255309 -167830223 + AT_rich Low_complexity Low_complexity 1 31 0 648 179 0 15 chr5 35255487 35255621 -167829911 - FLAM_C SINE Alu -1 132 1 642 299 28 24 chr5 35255786 35255997 -167829535 - LTR16A LTR ERVL -2 448 237 1581 202 16 58 chr5 35256099 35256480 -167829052 + MLT1A1 LTR MaLR 1 365 0 335 185 31 0 chr5 35256923 35256988 -167828544 + HsTC2 DNA Tc2 478 544 -1354 1880 189 29 3 chr5 35257407 35257750 -167827782 + MLT1A1 LTR MaLR 14 365 0 204 125 0 0 chr5 35258232 35258264 -167827268 + (TTC)n Simple_repeat Simple_repeat 2 33 0 25 0 0 0 chr5 35258559 35258584 -167826948 + AT_rich Low_complexity Low_complexity 1 25 0 291 284 47 24 chr5 35260191 35260318 -167825214 + L2 LINE L2 1855 1984 -1330 1798 224 65 9 chr5 35260341 35260837 -167824695 + LTR27 LTR ERV1 2 501 0 791 219 47 61 chr5 35261770 35262049 -167823483 - L1MA4A LINE L1 -23 6280 6006 390 303 118 0 chr5 35262321 35262499 -167823033 + L2 LINE L2 3115 3313 0 534 206 0 0 chr5 35263036 35263133 -167822399 - MLT1A1 LTR MaLR 0 365 269 303 177 152 25 chr5 35263239 35263318 -167822214 + L1MEc LINE L1 1983 2071 -4325 306 252 86 86 chr5 35263364 35263515 -167822017 + L1MEc LINE L1 2076 2226 -4170 491 305 121 0 chr5 35264211 35264385 -167821147 - MIR SINE MIR -65 197 3 945 196 106 73 chr5 35266293 35266716 -167818816 - LTR56 LTR ERV1 0 445 9 1113 216 22 117 chr5 35266783 35267186 -167818346 - MLT1A1 LTR MaLR 0 365 1 217 376 64 7 chr5 35267193 35267334 -167818198 + MIR SINE MIR 84 232 -30 28 29 0 0 chr5 35267346 35267381 -167818151 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr5 35267961 35267985 -167817547 + AT_rich Low_complexity Low_complexity 1 24 0 819 276 42 8 chr5 35268057 35268296 -167817236 + MIR SINE MIR 16 262 0 24 32 0 0 chr5 35269131 35269162 -167816370 + AT_rich Low_complexity Low_complexity 1 31 0 2617 36 42 0 chr5 35269465 35269797 -167815735 + L1PA5 LINE L1 5809 6154 0 605 150 0 60 chr5 35270086 35270219 -167815313 - FRAM SINE Alu 0 176 52 2113 121 3 14 chr5 35270342 35270639 -167814893 + AluSq SINE Alu 3 296 -17 22 35 0 0 chr5 35270654 35270683 -167814849 + AT_rich Low_complexity Low_complexity 1 29 0 1951 242 35 12 chr5 35270772 35271285 -167814247 + L1MD3 LINE L1 7471 7995 0 2098 124 3 6 chr5 35271326 35271640 -167813892 - AluSq SINE Alu 0 313 1 22 70 0 0 chr5 35271642 35271685 -167813847 + AT_rich Low_complexity Low_complexity 1 43 0 22 70 0 0 chr5 35274350 35274393 -167811139 + AT_rich Low_complexity Low_complexity 1 43 0 186 133 0 0 chr5 35274833 35274863 -167810669 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 1833 198 90 48 chr5 35275687 35276166 -167809366 + MLT1D LTR MaLR 7 505 0 823 316 53 34 chr5 35276593 35276973 -167808559 - MLT1G1 LTR MaLR -201 394 8 414 281 47 32 chr5 35278506 35278763 -167806769 - MLT1J LTR MaLR -123 323 64 1644 189 0 29 chr5 35279181 35279493 -167806039 + AluJo SINE Alu 1 303 -9 331 294 93 26 chr5 35279720 35279914 -167805618 + MLT1L LTR MaLR 374 580 -35 30 59 0 0 chr5 35280387 35280438 -167805094 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr5 35281781 35281804 -167803728 + AT_rich Low_complexity Low_complexity 1 23 0 27 62 0 0 chr5 35281873 35281921 -167803611 + AT_rich Low_complexity Low_complexity 1 48 0 190 397 0 0 chr5 35282111 35282184 -167803348 - L2 LINE L2 -4 3268 3196 2451 67 0 3 chr5 35282252 35282552 -167802980 + AluY SINE Alu 1 299 -12 1686 266 98 32 chr5 35282764 35283399 -167802133 - L1MEc LINE L1 -3085 3297 2705 2025 137 3 3 chr5 35283399 35283698 -167801834 - AluSx SINE Alu -13 299 1 1686 266 98 32 chr5 35283698 35284283 -167801249 - L1MEc LINE L1 -3677 2705 2036 1843 117 89 7 chr5 35284317 35284598 -167800934 + AluSx SINE Alu 1 304 -8 1860 170 3 0 chr5 35284888 35285182 -167800350 - AluSx SINE Alu -17 295 1 917 279 46 46 chr5 35285184 35285682 -167799850 - L1MEc LINE L1 -4597 1787 1290 198 191 0 0 chr5 35285710 35285752 -167799780 + (TA)n Simple_repeat Simple_repeat 1 42 0 1833 219 44 38 chr5 35286291 35286793 -167798739 - MLT1D LTR MaLR 0 505 1 2308 133 28 22 chr5 35287302 35287664 -167797868 + THE1B LTR MaLR 1 364 0 2218 120 17 9 chr5 35288110 35288460 -167797072 - THE1A LTR MaLR -2 353 1 1700 228 0 27 chr5 35288513 35288886 -167796646 + MLT1A1 LTR MaLR 1 363 -2 3498 207 95 86 chr5 35288888 35290052 -167795480 + MLT1A1-int LTR MaLR 2 1176 -559 198 208 0 0 chr5 35290143 35290196 -167795336 + (CATA)n Simple_repeat Simple_repeat 4 56 0 2352 150 57 2 chr5 35291106 35291512 -167794020 - MSTA LTR MaLR 0 428 1 1952 183 19 0 chr5 35293243 35293615 -167791917 + L1MA7 LINE L1 5487 5865 -426 1521 165 216 3 chr5 35293617 35293968 -167791564 + MSTA LTR MaLR 3 428 0 2680 134 0 0 chr5 35293970 35294373 -167791159 + THE1C-int LTR MaLR 3 405 -1175 1318 105 0 0 chr5 35294380 35294552 -167790980 - AluSg/x SINE Alu -1 311 140 6512 169 31 9 chr5 35294613 35295752 -167789780 + THE1C-int LTR MaLR 417 1580 0 1619 152 97 29 chr5 35295754 35296103 -167789429 + THE1C LTR MaLR 3 375 0 1029 198 32 0 chr5 35296103 35296407 -167789125 + L1MA7 LINE L1 5861 6280 -11 21 36 0 0 chr5 35296522 35296550 -167788982 + AT_rich Low_complexity Low_complexity 1 28 0 273 210 0 0 chr5 35296927 35296989 -167788543 + (CATA)n Simple_repeat Simple_repeat 3 64 0 1502 319 80 40 chr5 35297205 35297855 -167787677 + MER115 DNA AcHobo 8 683 -10 2447 134 26 2 chr5 35298296 35298721 -167786811 + L1MA5A LINE L1 5860 6294 -3 2024 118 7 0 chr5 35298908 35299208 -167786324 + AluSx SINE Alu 1 302 0 432 97 0 0 chr5 35299210 35299272 -167786260 + (TA)n Simple_repeat Simple_repeat 2 63 0 30 0 0 0 chr5 35301308 35301338 -167784194 + AT_rich Low_complexity Low_complexity 1 30 0 7208 69 7 3 chr5 35301421 35302375 -167783157 - L1P LINE L1 -1689 4457 3500 6888 65 3 0 chr5 35302375 35303963 -167781569 + L1PA6 LINE L1 4598 6154 0 1774 174 23 45 chr5 35304648 35305045 -167780487 + MLT1B LTR MaLR 1 388 -2 27 0 0 0 chr5 35305301 35305328 -167780204 + AT_rich Low_complexity Low_complexity 1 27 0 270 370 92 0 chr5 35305590 35305763 -167779769 - MIR SINE MIR -11 251 63 240 264 0 0 chr5 35305937 35306024 -167779508 + (TA)n Simple_repeat Simple_repeat 1 87 0 29 47 0 0 chr5 35306098 35306141 -167779391 + AT_rich Low_complexity Low_complexity 1 43 0 1038 195 0 63 chr5 35307798 35307925 -167777607 - MLT1C LTR MaLR 0 467 358 2189 108 3 0 chr5 35307925 35308221 -167777311 - AluY SINE Alu -14 297 1 1038 195 0 63 chr5 35308221 35308314 -167777218 - MLT1C LTR MaLR -109 358 261 601 101 18 46 chr5 35308314 35308423 -167777109 - L1M2 LINE L1 -799 5513 5408 687 242 6 0 chr5 35308425 35308582 -167776950 + L1MA9 LINE L1 5884 6041 -271 348 276 23 0 chr5 35308719 35308806 -167776726 + L1PA16 LINE L1 2082 2170 -5411 2298 104 3 3 chr5 35308953 35309261 -167776271 + AluSx SINE Alu 1 308 -4 8654 237 90 25 chr5 35309355 35311664 -167773868 + L1PA16 LINE L1 2182 4340 -3264 2119 93 0 4 chr5 35311664 35311958 -167773574 + AluSg SINE Alu 14 306 0 8654 237 90 25 chr5 35311958 35314640 -167770892 + L1PA16 LINE L1 4340 7604 0 42971 35 22 2 chr5 35314649 35320835 -167764697 + L1HS LINE L1 3 6155 0 209 200 0 0 chr5 35321485 35321525 -167764007 - MER5B DNA MER1_type 0 178 139 196 270 79 45 chr5 35321634 35321723 -167763809 + MER5B DNA MER1_type 87 178 0 2085 125 0 0 chr5 35322878 35323174 -167762358 - AluSx SINE Alu -16 296 1 1636 254 36 18 chr5 35324229 35324725 -167760807 + MLT1D LTR MaLR 1 505 0 2307 98 0 0 chr5 35324905 35325210 -167760322 - AluSx SINE Alu -7 305 1 222 227 0 45 chr5 35325743 35325809 -167759723 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 495 318 9 57 chr5 35327362 35327573 -167757959 + MIR SINE MIR 2 202 -60 186 171 0 0 chr5 35327610 35327651 -167757881 + GA-rich Low_complexity Low_complexity 2 42 0 258 277 0 0 chr5 35327771 35327836 -167757696 - LTR16A1 LTR ERVL -2 455 391 2065 205 40 5 chr5 35328918 35329298 -167756234 - MSTD LTR MaLR -3 393 1 658 105 44 44 chr5 35330040 35330154 -167755378 + L1PA14 LINE L1 6044 6157 -4 39 68 0 0 chr5 35330228 35330302 -167755230 + AT_rich Low_complexity Low_complexity 1 74 0 26 50 0 0 chr5 35330503 35330543 -167754989 + AT_rich Low_complexity Low_complexity 1 40 0 26 50 0 0 chr5 35331514 35331554 -167753978 + AT_rich Low_complexity Low_complexity 1 40 0 234 0 0 0 chr5 35331621 35331647 -167753885 + (CA)n Simple_repeat Simple_repeat 2 27 0 1819 221 29 8 chr5 35331792 35332167 -167753365 + MLT2B3 LTR ERVL 133 515 -39 182 152 0 43 chr5 35332173 35332219 -167753313 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 25 31 0 0 chr5 35332396 35332428 -167753104 + AT_rich Low_complexity Low_complexity 1 32 0 388 197 0 0 chr5 35332775 35332841 -167752691 - U4 snRNA snRNA -79 66 1 25 31 0 0 chr5 35332911 35332943 -167752589 + AT_rich Low_complexity Low_complexity 1 32 0 342 67 0 0 chr5 35335071 35335116 -167750416 + (TG)n Simple_repeat Simple_repeat 2 46 0 688 330 105 6 chr5 35335171 35335522 -167750010 - LTR16B LTR ERVL -31 433 48 1124 210 36 88 chr5 35335652 35336037 -167749495 + MLT1A1 LTR MaLR 1 365 0 1533 162 4 50 chr5 35336141 35336532 -167749000 - L1M LINE L1 -740 5428 5067 * 4003 196 30 32 chr5 35336515 35337430 -167748102 + L1MA10 LINE L1 5420 6332 -2 25 51 0 0 chr5 35338155 35338194 -167747338 + AT_rich Low_complexity Low_complexity 1 39 0 254 273 0 0 chr5 35338300 35338355 -167747177 - MLT1I LTR MaLR 0 409 355 300 308 38 23 chr5 35338484 35338617 -167746915 - MLT1I LTR MaLR -270 139 5 270 343 66 28 chr5 35338620 35338833 -167746699 - L3 LINE CR1 -921 656 436 1702 137 22 41 chr5 35338905 35339220 -167746312 - MER44D DNA MER2_type -1 608 30 338 302 39 8 chr5 35339326 35339455 -167746077 + MIR SINE MIR 81 213 -49 248 303 51 29 chr5 35339600 35339775 -167745757 - L1ME LINE L1 -303 5818 5640 21 36 0 0 chr5 35340091 35340119 -167745413 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr5 35340414 35340443 -167745089 + AT_rich Low_complexity Low_complexity 1 29 0 256 253 77 0 chr5 35340499 35340590 -167744942 + MLT1I LTR MaLR 312 409 0 1822 123 0 4 chr5 35340892 35341160 -167744372 - AluSg SINE Alu -43 267 1 2101 74 17 37 chr5 35341554 35341850 -167743682 - AluY SINE Alu -21 290 1 1838 152 3 3 chr5 35341852 35342142 -167743390 - AluJo SINE Alu -16 296 7 2685 32 3 3 chr5 35342910 35343220 -167742312 + L1PA2 LINE L1 5846 6155 0 1389 195 102 0 chr5 35343404 35343660 -167741872 + AluJb SINE Alu 1 282 -30 299 25 25 0 chr5 35343660 35343700 -167741832 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 1820 161 21 0 chr5 35343714 35343999 -167741533 + AluJb SINE Alu 1 291 -21 583 183 92 0 chr5 35344003 35344123 -167741409 - MER3 DNA MER1_type -57 152 22 1557 183 14 30 chr5 35344125 35344284 -167741248 - AluJb SINE Alu -21 291 138 2371 98 0 7 chr5 35344284 35344590 -167740942 - AluSg SINE Alu -6 304 1 1557 183 14 30 chr5 35344590 35344725 -167740807 - AluJb SINE Alu -174 138 2 1856 149 3 45 chr5 35344788 35345096 -167740436 + AluSx SINE Alu 1 295 -17 216 336 82 27 chr5 35345249 35345359 -167740173 + MER5B DNA MER1_type 55 170 -8 * 269 211 0 0 chr5 35345351 35345408 -167740124 + MIR3 SINE MIR 147 203 -5 910 102 0 0 chr5 35345566 35345684 -167739848 + FLAM_C SINE Alu 1 118 -15 2114 138 3 3 chr5 35346004 35346342 -167739190 + AluSx SINE Alu 1 312 0 1416 163 41 91 chr5 35346745 35346868 -167738664 + AluJo SINE Alu 2 130 -182 1739 133 18 14 chr5 35346868 35347147 -167738385 + AluSg SINE Alu 1 280 -30 1416 163 41 91 chr5 35347147 35347343 -167738189 + AluJo SINE Alu 130 305 -7 257 248 191 19 chr5 35347413 35347518 -167738014 - L2 LINE L2 -212 3060 2938 2055 112 6 29 chr5 35347567 35347879 -167737653 - AluSx SINE Alu -7 305 1 1447 157 39 57 chr5 35348704 35348832 -167736700 + AluJo SINE Alu 1 130 -182 2049 124 10 0 chr5 35348832 35349122 -167736410 - AluSx SINE Alu -19 293 1 1447 157 39 57 chr5 35349122 35349273 -167736259 + AluJo SINE Alu 130 275 -37 423 0 0 0 chr5 35349278 35349325 -167736207 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2292 107 0 0 chr5 35349780 35350080 -167735452 - AluSg SINE Alu -10 300 1 23 0 0 0 chr5 35350103 35350126 -167735406 + AT_rich Low_complexity Low_complexity 1 23 0 1980 122 0 0 chr5 35350126 35350396 -167735136 - AluSx SINE Alu -4 308 39 1588 108 27 0 chr5 35350917 35351235 -167734297 + L1P4 LINE L1 5161 5485 -676 2292 95 0 7 chr5 35351236 35351541 -167733991 + AluSx SINE Alu 2 304 -8 2013 218 137 58 chr5 35351719 35351868 -167733664 + MER82 DNA MER2_type 1 137 -516 2111 112 0 43 chr5 35351868 35352171 -167733361 + AluSx SINE Alu 1 290 -22 2013 218 137 58 chr5 35352171 35352626 -167732906 + MER82 DNA MER2_type 137 653 0 226 321 30 30 chr5 35352816 35352950 -167732582 + MLT1H LTR MaLR 29 162 -387 982 146 16 60 chr5 35353292 35353477 -167732055 - FAM SINE Alu -1 48 1 430 252 50 8 chr5 35353538 35353657 -167731875 + MLT1G1 LTR MaLR 16 139 -456 2440 120 25 8 chr5 35353756 35354114 -167731418 + THE1B LTR MaLR 1 364 0 9483 107 65 45 chr5 35354115 35355657 -167729875 + THE1B-int LTR MaLR 2 1574 -6 1283 123 49 5 chr5 35355664 35355867 -167729665 + THE1B LTR MaLR 3 214 -150 801 177 15 0 chr5 35355876 35356006 -167729526 - FLAM_C SINE Alu -1 132 1 662 146 0 0 chr5 35356008 35356111 -167729421 - AluSp/q SINE Alu -1 312 210 21 0 0 0 chr5 35360983 35361004 -167724528 + AT_rich Low_complexity Low_complexity 1 21 0 305 245 113 19 chr5 35361412 35361518 -167724014 + L2 LINE L2 3104 3219 -94 1691 163 80 0 chr5 35361522 35361822 -167723710 + MER2 DNA MER2_type 1 324 -21 1370 118 91 0 chr5 35361822 35362043 -167723489 + L1MA6 LINE L1 6056 6296 -4 23 33 0 0 chr5 35362059 35362089 -167723443 + AT_rich Low_complexity Low_complexity 1 30 0 1674 217 13 59 chr5 35362319 35362363 -167723169 + MLT1A2 LTR MaLR 1 45 -329 2505 57 3 0 chr5 35362363 35362660 -167722872 + AluY SINE Alu 1 298 -13 1674 217 13 59 chr5 35362660 35362938 -167722594 + MLT1A2 LTR MaLR 45 304 -70 1935 162 30 0 chr5 35362938 35363241 -167722291 - AluSx SINE Alu 0 312 1 1674 217 13 59 chr5 35363241 35363309 -167722223 + MLT1A2 LTR MaLR 304 374 0 1021 191 77 0 chr5 35363329 35363457 -167722075 + MER3 DNA MER1_type 1 150 -59 2480 59 0 10 chr5 35363457 35363763 -167721769 - AluY SINE Alu -8 303 1 1021 191 77 0 chr5 35363763 35363828 -167721704 + MER3 DNA MER1_type 150 209 0 636 210 107 51 chr5 35364325 35364524 -167721008 - MLT1F LTR MaLR 0 626 334 1351 181 49 58 chr5 35364525 35364757 -167720775 - MLT1A1 LTR MaLR 0 365 134 2011 124 0 28 chr5 35364757 35365088 -167720444 + AluSg SINE Alu 1 323 0 1351 181 49 58 chr5 35365088 35365180 -167720352 - MLT1A1 LTR MaLR -231 134 43 528 300 13 0 chr5 35365388 35365538 -167719994 - MLT1F LTR MaLR -400 167 16 399 371 34 21 chr5 35366762 35367053 -167718479 + L2 LINE L2 1978 2272 -1042 21 0 0 0 chr5 35367455 35367476 -167718056 + AT_rich Low_complexity Low_complexity 1 21 0 256 302 94 9 chr5 35367871 35367977 -167717555 + L2 LINE L2 3158 3272 0 23 33 0 0 chr5 35369260 35369290 -167716242 + AT_rich Low_complexity Low_complexity 1 30 0 300 273 0 0 chr5 35369645 35369733 -167715799 + MIR SINE MIR 100 187 -75 1985 215 14 65 chr5 35369811 35370209 -167715323 + L1M2 LINE L1 2528 2945 -3903 2154 133 0 0 chr5 35370209 35370510 -167715022 + AluSg SINE Alu 1 301 -9 1985 215 14 65 chr5 35370510 35371026 -167714506 + L1M2 LINE L1 2945 3392 -3456 2712 189 47 2 chr5 35371026 35371554 -167713978 + L1PB4 LINE L1 5604 6155 -1 3300 232 61 22 chr5 35371706 35372140 -167713392 + L1MC3 LINE L1 6147 6563 -1222 2057 170 123 5 chr5 35372140 35372523 -167713009 + MSTA LTR MaLR 1 428 0 3300 232 61 22 chr5 35372523 35373025 -167712507 + L1MC3 LINE L1 6563 7119 -666 606 211 34 46 chr5 35373089 35373264 -167712268 + MER104 DNA Tc2 7 179 -1 204 40 0 0 chr5 35374079 35374104 -167711428 + (TA)n Simple_repeat Simple_repeat 1 25 0 2367 67 0 10 chr5 35374594 35374893 -167710639 - AluY SINE Alu -15 296 1 584 225 7 53 chr5 35375206 35375357 -167710175 - MER20 DNA MER1_type -52 167 24 770 249 19 19 chr5 35375718 35375923 -167709609 + MER20 DNA MER1_type 8 212 -7 672 168 40 0 chr5 35376114 35376239 -167709293 + L1PA13 LINE L1 6033 6162 -1 33 0 0 0 chr5 35376899 35376932 -167708600 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr5 35377611 35377635 -167707897 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr5 35377694 35377722 -167707810 + AT_rich Low_complexity Low_complexity 1 28 0 3545 33 0 0 chr5 35378208 35378629 -167706903 - L1PA3 LINE L1 -14 6141 5721 6897 22 0 0 chr5 35378629 35379788 -167705744 + L1PA3 LINE L1 4563 5721 -434 429 268 0 0 chr5 35379958 35380055 -167705477 + Tigger3(Golem) DNA MER2_type 2 98 -2931 380 262 0 0 chr5 35380068 35380152 -167705380 + Tigger3(Golem) DNA MER2_type 2954 3037 0 587 165 0 9 chr5 35380498 35380613 -167704919 + (TA)n Simple_repeat Simple_repeat 1 114 0 1958 138 7 0 chr5 35380613 35380911 -167704621 - AluSq SINE Alu -11 302 3 28 48 0 0 chr5 35381269 35381311 -167704221 + AT_rich Low_complexity Low_complexity 1 42 0 1364 208 50 10 chr5 35382436 35382734 -167702798 - AluJo SINE Alu 0 312 3 285 149 0 60 chr5 35384048 35384115 -167701417 + MADE1 DNA Mariner 1 63 -17 243 309 170 31 chr5 35384279 35384538 -167700994 - MLT1J LTR MaLR -210 301 7 329 243 0 162 chr5 35386611 35386784 -167698748 - L2 LINE L2 -4 3309 3165 386 69 17 0 chr5 35387294 35387352 -167698180 + (CA)n Simple_repeat Simple_repeat 1 59 0 531 309 43 13 chr5 35387652 35387885 -167697647 - LTR16A LTR ERVL -184 266 27 23 78 0 0 chr5 35389259 35389310 -167696222 + AT_rich Low_complexity Low_complexity 1 51 0 29 0 0 0 chr5 35389637 35389666 -167695866 + AT_rich Low_complexity Low_complexity 1 29 0 6187 34 0 1 chr5 35389825 35390565 -167694967 - L1PA3 LINE L1 -3 6152 5414 10610 37 0 0 chr5 35390565 35391868 -167693664 + L1PA3 LINE L1 4101 5403 -743 209 355 117 19 chr5 35392409 35392623 -167692909 + L2 LINE L2 2029 2263 -1051 21 0 0 0 chr5 35392699 35392720 -167692812 + AT_rich Low_complexity Low_complexity 1 21 0 1068 141 98 86 chr5 35393404 35393659 -167691873 - Tigger2 DNA MER2_type -10 2708 2451 3803 183 34 0 chr5 35393713 35394446 -167691086 - Tigger2 DNA MER2_type -1959 759 2 1285 282 94 80 chr5 35394544 35396053 -167689479 + MER110-int LTR ERV1 1952 3590 -1057 675 273 103 8 chr5 35396260 35396513 -167689019 + MLT1D LTR MaLR 1 277 -228 289 170 0 0 chr5 35396516 35396563 -167688969 + MLT1A2 LTR MaLR 1 47 -327 381 300 0 0 chr5 35396605 35396715 -167688817 + MLT1A2 LTR MaLR 51 160 -214 940 191 11 26 chr5 35396767 35396978 -167688554 + MLT1A2 LTR MaLR 182 374 0 * 960 274 9 0 chr5 35396978 35397207 -167688325 + MLT1D LTR MaLR 275 505 0 665 197 108 18 chr5 35397345 35397565 -167687967 - MER33 DNA MER1_type -98 226 1 180 0 0 0 chr5 35397604 35397624 -167687908 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 476 324 43 10 chr5 35397775 35397982 -167687550 + MER110 LTR ERV1 242 455 -36 5207 156 7 7 chr5 35398382 35399224 -167686308 + MSTA-int LTR MaLR 739 1580 0 1582 185 130 18 chr5 35399224 35399608 -167685924 + MSTA LTR MaLR 1 427 -1 1573 251 48 15 chr5 35400049 35400504 -167685028 - MLT1D LTR MaLR 0 505 36 289 308 8 26 chr5 35400775 35400892 -167684640 + MIR SINE MIR 124 238 -24 767 269 28 9 chr5 35402089 35402301 -167683231 + MER20 DNA MER1_type 2 217 -2 219 69 0 0 chr5 35402339 35402368 -167683164 + (T)n Simple_repeat Simple_repeat 1 29 0 314 371 87 27 chr5 35402635 35403037 -167682495 - MLT1J1 LTR MaLR 0 446 21 1062 122 6 0 chr5 35403062 35403218 -167682314 + AluSg/x SINE Alu 151 307 -5 2108 115 10 6 chr5 35403366 35403678 -167681854 - AluSq SINE Alu 0 313 1 410 333 70 33 chr5 35404369 35404582 -167680950 + L1PA16 LINE L1 790 1010 -6564 12236 240 25 20 chr5 35404706 35408438 -167677094 + L1PA16 LINE L1 2182 5895 -1709 1061 173 154 58 chr5 35408438 35408698 -167676834 + AluJo SINE Alu 2 286 -16 706 71 0 18 chr5 35408698 35408810 -167676722 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 12236 240 25 20 chr5 35408810 35409638 -167675894 + L1PA16 LINE L1 5895 6774 -830 1775 86 19 89 chr5 35409638 35409952 -167675580 + L1PA10 LINE L1 5876 6167 -1 12236 240 25 20 chr5 35409952 35410683 -167674849 + L1PA16 LINE L1 6774 7500 -104 2046 192 104 41 chr5 35411082 35412170 -167673362 - pTR5 LTR ERV1 -259 2179 743 424 337 61 4 chr5 35412490 35412754 -167672778 - MER110 LTR ERV1 -26 465 187 254 231 9 111 chr5 35412828 35412936 -167672596 - MER110A LTR ERV1 -298 170 74 229 65 0 43 chr5 35413134 35413180 -167672352 + (TG)n Simple_repeat Simple_repeat 2 45 0 344 119 17 0 chr5 35414130 35414189 -167671343 + (TA)n Simple_repeat Simple_repeat 1 60 0 21 0 0 0 chr5 35414916 35414937 -167670595 + AT_rich Low_complexity Low_complexity 1 21 0 31 82 0 0 chr5 35415358 35415431 -167670101 + AT_rich Low_complexity Low_complexity 1 73 0 366 334 54 49 chr5 35416646 35417019 -167668513 + L1ME LINE L1 4348 4722 -1424 287 295 78 61 chr5 35417218 35417838 -167667694 + L1ME LINE L1 5290 5918 -252 225 300 118 39 chr5 35418013 35418293 -167667239 + L1MC/D LINE L1 5296 5597 -2211 2856 6 0 3 chr5 35418391 35418710 -167666822 + AluYb8 SINE Alu 1 318 0 243 88 0 0 chr5 35419291 35419325 -167666207 + (CA)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr5 35419365 35419387 -167666145 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr5 35419560 35419581 -167665951 + AT_rich Low_complexity Low_complexity 1 21 0 2008 139 7 3 chr5 35419724 35420034 -167665498 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr5 35420464 35420486 -167665046 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr5 35420579 35420602 -167664930 + AT_rich Low_complexity Low_complexity 1 23 0 1293 269 98 44 chr5 35420835 35421460 -167664072 + L1ME LINE L1 3855 4564 -1582 2519 138 24 12 chr5 35421460 35421879 -167663653 + MSTA LTR MaLR 5 428 0 1293 269 98 44 chr5 35421879 35422337 -167663195 + L1ME LINE L1 4564 4996 -1150 790 235 184 27 chr5 35422633 35423007 -167662525 + L1ME LINE L1 5329 5761 -403 4509 157 86 39 chr5 35423072 35423428 -167662104 + L1MC1 LINE L1 5283 5621 -712 1855 191 57 24 chr5 35423428 35423846 -167661686 - MSTB1 LTR MaLR 0 432 1 4509 157 86 39 chr5 35423846 35424493 -167661039 + L1MC1 LINE L1 5621 6333 0 329 0 0 0 chr5 35424971 35425009 -167660523 - L1P1 LINE L1 -621 5534 5497 275 0 0 0 chr5 35425010 35425050 -167660482 + L1PA2 LINE L1 6116 6155 0 479 289 191 33 chr5 35425304 35425671 -167659861 - L2 LINE L2 0 3313 2889 27 29 0 0 chr5 35425752 35425786 -167659746 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr5 35426534 35426557 -167658975 + AT_rich Low_complexity Low_complexity 1 23 0 1530 198 16 29 chr5 35627282 35627596 -167457936 - AluJb SINE Alu -2 310 1 1081 256 100 90 chr5 35627651 35628230 -167457302 + MLT1E LTR MaLR 4 588 -5 226 254 57 49 chr5 35629566 35629688 -167455844 - MLT1E1 LTR MaLR -522 132 10 270 67 17 50 chr5 35630086 35630146 -167455386 + (GGGTG)n Simple_repeat Simple_repeat 4 61 0 230 123 88 0 chr5 35630822 35630879 -167454653 - L1MCa LINE L1 -4362 2064 2003 2182 102 10 3 chr5 35631045 35631339 -167454193 + AluSx SINE Alu 1 296 -16 387 305 125 27 chr5 35631340 35631644 -167453888 + L2 LINE L2 2742 3063 -209 312 285 122 28 chr5 35631723 35631937 -167453595 - L2 LINE L2 -825 2489 2256 216 311 41 16 chr5 35632046 35632168 -167453364 + L2 LINE L2 2152 2276 -1038 235 310 0 0 chr5 35632777 35632922 -167452610 + C-rich Low_complexity Low_complexity 1 145 0 * 417 151 21 65 chr5 35632817 35633003 -167452529 + (CCA)n Simple_repeat Simple_repeat 1 178 0 314 114 9 48 chr5 35633004 35633109 -167452423 + (CACCC)n Simple_repeat Simple_repeat 1 101 0 13332 183 25 16 chr5 35633413 35635829 -167449703 - L1P5 LINE L1 -424 6378 3925 2275 78 17 3 chr5 35635829 35636123 -167449409 - AluSc SINE Alu -11 298 1 13332 183 25 16 chr5 35636123 35636893 -167448639 - L1P5 LINE L1 -2877 3925 3163 358 238 2 9 chr5 35636896 35637005 -167448527 - L1P5 LINE L1 -4894 1903 1782 13853 27 1 1 chr5 35637021 35639327 -167446205 - L1PA3 LINE L1 -1 6154 3844 5217 107 8 0 chr5 35639795 35640503 -167445029 - L1PA8 LINE L1 0 6172 5459 1843 136 7 0 chr5 35640757 35641036 -167444496 - AluY SINE Alu -30 281 1 453 276 132 72 chr5 35641471 35641819 -167443713 - Charlie2a DNA MER1_type -583 2279 1911 243 316 36 14 chr5 35641848 35641987 -167443545 - Charlie2a DNA MER1_type -1059 1803 1662 1727 157 0 14 chr5 35642111 35642442 -167443090 + AluSx SINE Alu 3 329 0 293 276 38 0 chr5 35642628 35642733 -167442799 + MLT1E3 LTR MaLR 1 109 -545 619 248 124 58 chr5 35642786 35643214 -167442318 + MLT1E3 LTR MaLR 169 624 0 5295 101 7 0 chr5 35645963 35646675 -167438857 - L1PA8 LINE L1 0 6172 5456 181 75 50 25 chr5 35648578 35648618 -167436914 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 1336 269 12 7 chr5 35648767 35649158 -167436374 - L1MC1 LINE L1 -1 6343 5961 4588 198 38 24 chr5 35649184 35650694 -167434838 - L1MA8 LINE L1 -25 6266 4731 296 356 27 0 chr5 35650731 35650877 -167434655 - L1MCa LINE L1 -6271 155 6 1092 280 10 14 chr5 35651745 35652034 -167433498 - AluJb SINE Alu -14 288 1 1194 270 13 18 chr5 35654093 35654478 -167431054 - L1MC1 LINE L1 -5 6328 5946 4007 203 27 51 chr5 35654497 35655766 -167429766 - L1MA8 LINE L1 -26 6265 5032 1252 233 0 24 chr5 35656631 35656923 -167428609 - AluJb SINE Alu -23 289 5 2090 131 0 7 chr5 35659015 35659312 -167426220 + AluSc SINE Alu 1 295 -14 356 214 34 11 chr5 35659731 35659820 -167425712 - L1PB3 LINE L1 0 6154 6064 3897 185 33 35 chr5 35660023 35660996 -167424536 - L1PB3 LINE L1 -27 6127 5157 22 0 0 0 chr5 35661592 35661614 -167423918 + AT_rich Low_complexity Low_complexity 1 22 0 1591 195 3 0 chr5 35662021 35662303 -167423229 - AluJb SINE Alu -29 283 1 272 195 153 17 chr5 35662369 35662487 -167423045 - Charlie7 DNA MER1_type -2456 156 23 807 148 8 0 chr5 35662847 35662975 -167422557 - AluSq/x SINE Alu -184 129 1 1669 167 0 30 chr5 35663199 35663518 -167422014 + AluSx SINE Alu 3 312 0 261 268 41 0 chr5 35663731 35663828 -167421704 + MLT1E3 LTR MaLR 7 107 -547 482 244 89 69 chr5 35663953 35664314 -167421218 + MLT1E3 LTR MaLR 257 624 0 394 308 8 0 chr5 35666210 35666340 -167419192 - Charlie2 DNA MER1_type -836 2026 1896 268 222 167 48 chr5 35666559 35666685 -167418847 + MLT1E3 LTR MaLR 484 624 0 5198 103 13 3 chr5 35669436 35670141 -167415391 - L1PA8 LINE L1 -2 6170 5459 566 259 134 70 chr5 35670831 35671190 -167414342 - Charlie2 DNA MER1_type -585 2277 1896 215 146 62 0 chr5 35671909 35671957 -167413575 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1280 260 15 5 chr5 35672118 35672479 -167413053 - L1MC1 LINE L1 -17 6316 5960 4240 206 41 24 chr5 35672504 35674013 -167411519 - L1MA8 LINE L1 -25 6266 4731 294 322 41 14 chr5 35674050 35674196 -167411336 - L1MCa LINE L1 -6271 155 6 1207 247 36 4 chr5 35675056 35675335 -167410197 - AluJb SINE Alu -14 288 1 10926 191 10 26 chr5 35675912 35676574 -167408958 - L1P5 LINE L1 -545 6322 5650 2328 94 7 0 chr5 35676574 35676882 -167408650 + AluY SINE Alu 1 310 -1 10926 191 10 26 chr5 35676882 35678986 -167406546 - L1P5 LINE L1 -1217 5650 3606 3255 174 18 3 chr5 35678988 35679654 -167405878 - L1P5 LINE L1 -4796 2067 1392 313 236 11 11 chr5 35679678 35679767 -167405765 - L1P5 LINE L1 -6694 169 81 415 235 0 0 chr5 35679931 35680016 -167405516 - AluSg/x SINE Alu -23 286 202 301 242 55 23 chr5 35680911 35681039 -167404493 + MLT1E1 LTR MaLR 1 132 -522 230 232 24 49 chr5 35681070 35681152 -167404380 + MLT1E1 LTR MaLR 172 251 -373 398 103 29 0 chr5 35684373 35684441 -167401091 + CT-rich Low_complexity Low_complexity 2 71 0 495 166 0 35 chr5 35684444 35684613 -167400919 + C-rich Low_complexity Low_complexity 2 164 0 2073 141 13 0 chr5 35684616 35684921 -167400611 - AluSx SINE Alu -3 309 1 412 283 147 35 chr5 35685340 35685686 -167399846 - Charlie2a DNA MER1_type -582 2280 1896 273 323 15 0 chr5 35685704 35685837 -167399695 - Charlie2a DNA MER1_type -1064 1798 1664 2230 79 11 0 chr5 35686323 35686603 -167398929 + AluSc SINE Alu 12 294 -15 2225 85 11 0 chr5 35686605 35686924 -167398608 + AluY SINE Alu 1 322 0 283 281 59 22 chr5 35688288 35688423 -167397109 - MLT1E3 LTR MaLR -330 294 155 312 189 0 0 chr5 35689114 35689188 -167396344 - L1PB3 LINE L1 0 6154 6081 22 56 0 0 chr5 35689333 35689369 -167396163 + AT_rich Low_complexity Low_complexity 1 36 0 1960 172 16 3 chr5 35689372 35689745 -167395787 - L1PB3 LINE L1 -8 6146 5769 12409 191 24 18 chr5 35689770 35690133 -167395399 - L1PB1 LINE L1 -5 7584 7225 279 0 0 0 chr5 35690133 35690164 -167395368 + (CA)n Simple_repeat Simple_repeat 2 32 0 12409 191 24 18 chr5 35690164 35690226 -167395306 - L1PB1 LINE L1 -364 7225 7165 2477 85 0 0 chr5 35690226 35690531 -167395001 - AluY SINE Alu -6 305 1 12409 191 24 18 chr5 35690531 35692957 -167392575 - L1PB1 LINE L1 -424 7165 4713 2340 75 14 3 chr5 35692957 35693252 -167392280 - AluSc SINE Alu -11 298 1 12409 191 24 18 chr5 35693252 35694022 -167391510 - L1PB1 LINE L1 -2876 4713 3950 539 219 12 69 chr5 35694029 35694150 -167391382 - L1PB1 LINE L1 -4894 2690 2593 2752 28 0 0 chr5 35694150 35694473 -167391059 - L1PA2 LINE L1 -5 6150 5828 539 219 12 69 chr5 35694473 35694610 -167390922 - L1PB1 LINE L1 -4991 2593 2450 4053 269 30 31 chr5 35694822 35696092 -167389440 - L1PB1 LINE L1 -5106 2478 155 337 96 64 85 chr5 35696099 35696193 -167389339 - L1P5 LINE L1 -324 5827 5736 2479 58 0 3 chr5 35696193 35696502 -167389030 - AluY SINE Alu -3 308 1 831 169 19 0 chr5 35696505 35696659 -167388873 - L1PB1 LINE L1 -7416 165 9 3519 214 29 21 chr5 35696662 35698291 -167387241 - L1P5 LINE L1 -388 5766 4127 1361 212 22 19 chr5 35698299 35698658 -167386874 - L1MC1 LINE L1 -16 6317 5958 3514 206 30 36 chr5 35698693 35700239 -167385293 - L1MA8 LINE L1 -25 6266 4726 470 250 20 20 chr5 35700268 35700317 -167385215 - L1MCa LINE L1 -6270 156 108 2273 97 0 35 chr5 35700317 35700628 -167384904 - AluSp SINE Alu -13 300 1 470 250 20 20 chr5 35700628 35700730 -167384802 - L1MCa LINE L1 -6317 109 5 234 234 73 95 chr5 35703741 35703848 -167381684 - MLT1E1 LTR MaLR -520 134 29 2167 132 10 44 chr5 35703848 35704235 -167381297 + THE1C LTR MaLR 1 374 -1 234 234 73 95 chr5 35704235 35704264 -167381268 - MLT1E1 LTR MaLR -625 29 1 25 65 0 0 chr5 35704991 35705037 -167380495 + AT_rich Low_complexity Low_complexity 1 46 0 285 250 188 0 chr5 35706005 35706101 -167379431 - MIR3 SINE MIR -48 160 47 1289 224 45 25 chr5 35706586 35706944 -167378588 - MLT1A1 LTR MaLR 0 365 1 270 309 46 7 chr5 35707730 35707882 -167377650 - MER103 DNA DNA -7 159 2 610 293 112 5 chr5 35708443 35708658 -167376874 + MIR SINE MIR 23 260 -2 22 0 0 0 chr5 35708947 35708969 -167376563 + AT_rich Low_complexity Low_complexity 1 22 0 1486 77 0 0 chr5 35708969 35709151 -167376381 + AluSq SINE Alu 1 182 -131 270 71 0 0 chr5 35709153 35709195 -167376337 + AluSq SINE Alu 259 300 -2 3077 166 6 36 chr5 35709222 35709856 -167375676 - L1MB2 LINE L1 -8 6163 5549 25 65 0 0 chr5 35710387 35710433 -167375099 + AT_rich Low_complexity Low_complexity 1 46 0 298 40 100 0 chr5 35710529 35710579 -167374953 - AluY SINE Alu -1 300 246 17610 109 36 22 chr5 35711347 35712629 -167372903 + Charlie3 DNA MER1_type 4 1268 -1438 1570 114 5 0 chr5 35712629 35712840 -167372692 - AluSg SINE Alu -98 212 1 17610 109 36 22 chr5 35712840 35714224 -167371308 + Charlie3 DNA MER1_type 1268 2705 -1 2219 92 0 3 chr5 35714861 35715153 -167370379 - AluSc SINE Alu -18 291 1 1358 170 112 8 chr5 35715230 35715489 -167370043 + AluJb SINE Alu 1 286 -26 213 39 0 0 chr5 35715489 35715515 -167370017 + (CA)n Simple_repeat Simple_repeat 2 27 0 2632 42 0 3 chr5 35715732 35716040 -167369492 - AluY SINE Alu -4 307 1 299 167 0 28 chr5 35716208 35716280 -167369252 + (TATATG)n Simple_repeat Simple_repeat 4 73 0 359 238 12 0 chr5 35716767 35716849 -167368683 - MER69A DNA AcHobo -3 174 92 2667 183 13 45 chr5 35716849 35717445 -167368087 + MER6A DNA MER2_type 1 577 -28 264 242 22 22 chr5 35717457 35717548 -167367984 - MER69A DNA AcHobo -84 93 3 281 281 184 18 chr5 35717549 35717663 -167367869 + L2 LINE L2 3181 3313 0 21 71 0 0 chr5 35718040 35718082 -167367450 + AT_rich Low_complexity Low_complexity 1 42 0 2219 109 3 10 chr5 35718310 35718621 -167366911 - AluSc SINE Alu 0 309 1 22 0 0 0 chr5 35718814 35718836 -167366696 + AT_rich Low_complexity Low_complexity 1 22 0 575 228 108 12 chr5 35719749 35719916 -167365616 - MER5A DNA MER1_type 0 189 7 1065 235 71 10 chr5 35720157 35720451 -167365081 - L1MD2 LINE L1 -71 6288 5977 4432 95 9 15 chr5 35721543 35722225 -167363307 - L1PB2 LINE L1 0 6151 5474 201 213 213 0 chr5 35723527 35723588 -167361944 - L2 LINE L2 -9 3304 3231 219 311 41 16 chr5 35724484 35724606 -167360926 - L2 LINE L2 -1038 2276 2152 316 280 122 28 chr5 35724715 35724929 -167360603 + L2 LINE L2 2256 2489 -825 546 300 87 41 chr5 35724992 35725313 -167360219 - L2 LINE L2 -186 3086 2744 2248 109 7 0 chr5 35725313 35725607 -167359925 - AluSx SINE Alu -16 296 1 546 300 87 41 chr5 35725607 35725757 -167359775 - L2 LINE L2 -528 2744 2602 322 364 7 13 chr5 35726307 35726461 -167359071 + LTR33 LTR ERVL 30 182 -339 318 240 89 113 chr5 35726930 35727222 -167358310 + LTR33A LTR ERVL 226 510 -13 290 352 78 17 chr5 35727293 35727472 -167358060 + MIR SINE MIR 57 246 -16 480 111 0 0 chr5 35728410 35728482 -167357050 + (TA)n Simple_repeat Simple_repeat 1 72 0 1339 171 91 23 chr5 35728503 35728767 -167356765 - AluJo SINE Alu -30 282 1 22 0 0 0 chr5 35730109 35730131 -167355401 + AT_rich Low_complexity Low_complexity 1 22 0 293 276 58 35 chr5 35730709 35730796 -167354736 + L2 LINE L2 3151 3239 -33 735 268 22 26 chr5 35730993 35731224 -167354308 + MIR SINE MIR 28 257 -5 23 54 0 0 chr5 35732334 35732371 -167353161 + AT_rich Low_complexity Low_complexity 1 37 0 424 216 9 18 chr5 35732376 35732487 -167353045 - L1MA10 LINE L1 -7 6327 6218 4723 98 42 0 chr5 35732902 35733585 -167351947 + L1PA10 LINE L1 5445 6156 -12 1322 146 27 6 chr5 35733992 35734392 -167351140 - L1PA15 LINE L1 -674 5491 5082 * 2282 126 26 2 chr5 35734391 35734972 -167350560 + L1PA15 LINE L1 5504 6164 -1 363 60 0 0 chr5 35735964 35736014 -167349518 + (CA)n Simple_repeat Simple_repeat 1 50 0 204 222 69 28 chr5 35736402 35736474 -167349058 + L2 LINE L2 2564 2638 -676 23 0 0 0 chr5 35737884 35737907 -167347625 + AT_rich Low_complexity Low_complexity 1 23 0 558 258 101 35 chr5 35737918 35738260 -167347272 + MLT1G3 LTR MaLR 12 394 -201 410 271 54 30 chr5 35738475 35738641 -167346891 + MIR SINE MIR 76 245 -17 190 244 89 0 chr5 35739039 35739084 -167346448 - L2 LINE L2 0 3272 3224 966 209 15 0 chr5 35739186 35739382 -167346150 + MER58A DNA MER1_type 11 209 -15 202 356 171 0 chr5 35739402 35739548 -167345984 + L3 LINE CR1 1066 1236 -341 341 288 77 86 chr5 35739664 35739897 -167345635 + L1MC4a LINE L1 5595 5825 -1983 6718 16 3 0 chr5 35739902 35740675 -167344857 + L1PA3 LINE L1 5381 6155 0 23 0 0 0 chr5 35740754 35740777 -167344755 + AT_rich Low_complexity Low_complexity 1 23 0 403 247 57 46 chr5 35740796 35740990 -167344542 - MLT1J LTR MaLR -7 504 309 30 69 0 0 chr5 35741404 35741462 -167344070 + AT_rich Low_complexity Low_complexity 1 58 0 33 0 0 0 chr5 35741509 35741542 -167343990 + AT_rich Low_complexity Low_complexity 1 33 0 206 125 0 25 chr5 35741597 35741637 -167343895 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 604 324 47 52 chr5 35741646 35742241 -167343291 - Charlie7 DNA MER1_type -2000 612 21 293 252 53 12 chr5 35742284 35742416 -167343116 - MLT2F LTR ERVL 0 663 269 578 192 8 45 chr5 35742601 35742755 -167342777 - MLT1E3 LTR MaLR -399 255 55 519 259 7 22 chr5 35742767 35742906 -167342626 - MLT2F LTR ERVL -526 137 1 351 301 111 13 chr5 35743859 35744012 -167341520 + MIR SINE MIR 89 256 -6 319 403 19 13 chr5 35744237 35744391 -167341141 - MIR3 SINE MIR -19 189 35 477 0 0 0 chr5 35744534 35744587 -167340945 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 3443 189 69 5 chr5 35745803 35746571 -167338961 + Tigger6a DNA MER2_type 2 818 -265 406 268 79 53 chr5 35747075 35747430 -167338102 + MLT1E3 LTR MaLR 261 624 0 282 337 24 0 chr5 35748824 35748907 -167336625 - MER91B DNA MER1_type -6 184 100 546 210 26 62 chr5 35749183 35749268 -167336264 - MER96B DNA MER1_type? -229 188 101 3887 142 29 18 chr5 35749268 35749949 -167335583 + L1MC1 LINE L1 5639 6327 -6 546 210 26 62 chr5 35749949 35750058 -167335474 - MER96B DNA MER1_type? -316 101 1 663 226 32 16 chr5 35750374 35750560 -167334972 + MER53 DNA DNA 1 189 0 2217 80 37 0 chr5 35750836 35751135 -167334397 - AluSg SINE Alu 0 310 1 2325 64 0 3 chr5 35751843 35752138 -167333394 - AluY SINE Alu -17 294 1 183 42 0 0 chr5 35753336 35753360 -167332172 + (CAATT)n Simple_repeat Simple_repeat 5 28 0 29 28 0 0 chr5 35756057 35756093 -167329439 + AT_rich Low_complexity Low_complexity 1 36 0 206 344 44 0 chr5 35756249 35756339 -167329193 - MIR3 SINE MIR -6 202 109 22 0 0 0 chr5 35757222 35757244 -167328288 + AT_rich Low_complexity Low_complexity 1 22 0 483 60 0 0 chr5 35757851 35757918 -167327614 + (GA)n Simple_repeat Simple_repeat 2 68 0 921 228 55 14 chr5 35758299 35758518 -167327014 - MIR SINE MIR -29 233 6 486 120 0 0 chr5 35758673 35758748 -167326784 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 21 36 0 0 chr5 35758780 35758808 -167326724 + AT_rich Low_complexity Low_complexity 1 28 0 203 218 119 89 chr5 35759281 35759382 -167326150 - MIR3 SINE MIR -4 204 101 1027 175 34 0 chr5 35760008 35760214 -167325318 - MER20 DNA MER1_type 0 219 7 287 286 97 61 chr5 35760473 35760669 -167324863 - MIR SINE MIR -19 243 41 314 251 123 103 chr5 35760690 35760933 -167324599 + MIR SINE MIR 10 257 -5 398 316 19 26 chr5 35760988 35761143 -167324389 + MIR SINE MIR 37 190 -72 218 222 0 0 chr5 35761170 35761215 -167324317 + (TAA)n Simple_repeat Simple_repeat 2 46 0 2303 88 0 0 chr5 35761679 35761964 -167323568 + AluSq SINE Alu 1 285 -28 360 59 0 0 chr5 35761964 35762015 -167323517 + (CCAA)n Simple_repeat Simple_repeat 2 52 0 201 39 0 0 chr5 35762138 35762164 -167323368 + (GA)n Simple_repeat Simple_repeat 2 27 0 290 371 88 34 chr5 35762404 35762698 -167322834 - L2 LINE L2 -20 3252 2943 1710 164 46 9 chr5 35763414 35763743 -167321789 - MER58B DNA MER1_type 0 341 1 228 315 34 0 chr5 35764969 35765058 -167320474 - Charlie7 DNA MER1_type -2516 96 5 21 36 0 0 chr5 35766117 35766145 -167319387 + AT_rich Low_complexity Low_complexity 1 28 0 1743 122 11 36 chr5 35767385 35767663 -167317869 - AluSg SINE Alu -10 300 30 1004 198 0 0 chr5 35768014 35768191 -167317341 - MER45A DNA AcHobo 0 178 2 2077 135 3 22 chr5 35768714 35769032 -167316500 + AluSx SINE Alu 1 312 0 2148 136 36 28 chr5 35770109 35770470 -167315062 + THE1B LTR MaLR 1 364 0 231 146 0 0 chr5 35773606 35773647 -167311885 + (CAT)n Simple_repeat Simple_repeat 2 42 0 2169 107 67 17 chr5 35774103 35774459 -167311073 - THE1C LTR MaLR -1 374 1 24 53 0 0 chr5 35775426 35775464 -167310068 + AT_rich Low_complexity Low_complexity 1 38 0 221 215 46 0 chr5 35777926 35777991 -167307541 + (CCCCAA)n Simple_repeat Simple_repeat 5 72 0 3389 306 87 32 chr5 35777998 35778750 -167306782 - L2 LINE L2 -11 3302 2593 1754 172 0 36 chr5 35778750 35779058 -167306474 - AluJb SINE Alu -15 297 1 3389 306 87 32 chr5 35779058 35780229 -167305303 - L2 LINE L2 -720 2593 1269 780 318 159 10 chr5 35780646 35781042 -167304490 - L2 LINE L2 -2057 1257 803 23 0 0 0 chr5 35781919 35781942 -167303590 + AT_rich Low_complexity Low_complexity 1 23 0 28 71 0 0 chr5 35781973 35782029 -167303503 + AT_rich Low_complexity Low_complexity 1 56 0 42667 36 1 1 chr5 35782121 35788277 -167297255 - L1PA3 LINE L1 -1 6154 4 387 316 22 0 chr5 35788363 35788499 -167297033 + MER69A DNA AcHobo 39 177 0 897 118 7 78 chr5 35791308 35791461 -167294071 - AluSg/x SINE Alu -31 279 138 583 94 21 0 chr5 35792365 35792461 -167293071 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 289 304 45 54 chr5 35792666 35792890 -167292642 - L2 LINE L2 -215 3057 2836 240 325 31 62 chr5 35792943 35793103 -167292429 - L2 LINE L2 -610 2704 2550 22 35 0 0 chr5 35794285 35794314 -167291218 + AT_rich Low_complexity Low_complexity 1 29 0 184 330 110 11 chr5 35796030 35796121 -167289411 + MIR SINE MIR 22 121 -87 1879 193 10 56 chr5 35796132 35796542 -167288990 + MSTD LTR MaLR 6 396 0 213 121 0 0 chr5 35796707 35796740 -167288792 + (TC)n Simple_repeat Simple_repeat 2 34 0 680 290 82 90 chr5 35797969 35798263 -167287269 + L2 LINE L2 2472 2767 -546 1721 189 16 22 chr5 35798263 35798575 -167286957 - AluJb SINE Alu -2 310 1 680 290 82 90 chr5 35798575 35798630 -167286902 + L2 LINE L2 2767 2821 -492 1083 246 98 89 chr5 35798630 35799212 -167286320 + MLT1E LTR MaLR 4 590 -3 680 290 82 90 chr5 35799212 35799698 -167285834 + L2 LINE L2 2821 3310 -3 249 284 37 55 chr5 35799696 35799805 -167285727 + MIR3 SINE MIR 93 199 -9 * 696 189 41 18 chr5 35799958 35800090 -167285442 + MER3 DNA MER1_type 2 93 -69 1653 176 13 20 chr5 35800090 35800391 -167285141 - AluJo SINE Alu -9 303 5 696 189 41 18 chr5 35800391 35800427 -167285105 + MER3 DNA MER1_type 93 127 -35 342 342 52 19 chr5 35801314 35801469 -167284063 + MIR SINE MIR 24 183 -79 464 299 133 50 chr5 35801663 35801941 -167283591 + L2 LINE L2 3012 3312 -1 242 373 22 0 chr5 35803927 35804061 -167281471 + MLT1K LTR MaLR 157 293 -295 1140 209 141 15 chr5 35804243 35804697 -167280835 - L1MDa LINE L1 -4820 1720 1210 1995 212 163 55 chr5 35804735 35805430 -167280102 - L1MDa LINE L1 -5664 876 87 2862 102 23 16 chr5 35805430 35805796 -167279736 - L1PB1 LINE L1 0 6151 5780 954 27 41 0 chr5 35805796 35805942 -167279590 + (TCTA)n Simple_repeat Simple_repeat 1 152 0 2862 102 23 16 chr5 35805942 35806018 -167279514 - L1PB1 LINE L1 -371 5780 5706 1995 212 163 55 chr5 35806018 35806100 -167279432 - L1MDa LINE L1 -6453 87 15 2277 293 99 69 chr5 35806182 35806723 -167278809 - L1M4 LINE L1 -1163 4983 4459 1764 175 0 23 chr5 35806723 35807031 -167278501 - AluJb SINE Alu -11 301 1 2277 293 99 69 chr5 35807031 35807658 -167277874 - L1M4 LINE L1 -1687 4459 3852 631 226 0 0 chr5 35807658 35807815 -167277717 - FLAM_A SINE Alu 0 158 2 2277 293 99 69 chr5 35807815 35808872 -167276660 - L1M4 LINE L1 -2294 3852 2690 2686 55 0 0 chr5 35809697 35810009 -167275523 - AluSp SINE Alu -1 312 1 294 324 150 45 chr5 35810243 35810704 -167274828 + L2 LINE L2 1656 2067 -1247 2569 55 0 0 chr5 35810704 35811015 -167274517 - AluY SINE Alu 0 311 1 294 324 150 45 chr5 35811015 35811445 -167274087 + L2 LINE L2 2067 2641 -673 2141 41 60 0 chr5 35811925 35812227 -167273305 + AluY SINE Alu 1 318 0 393 22 0 0 chr5 35812361 35812407 -167273125 + (CTAAT)n Simple_repeat Simple_repeat 4 49 0 374 360 70 19 chr5 35813302 35813516 -167272016 - L3 LINE CR1 -400 1177 953 28 29 0 0 chr5 35813882 35813917 -167271615 + AT_rich Low_complexity Low_complexity 1 35 0 330 237 85 108 chr5 35814101 35814396 -167271136 + MLT1I LTR MaLR 29 316 -93 2314 114 7 0 chr5 35815117 35815425 -167270107 + AluSg SINE Alu 1 310 0 243 270 48 0 chr5 35815903 35815966 -167269566 + L2 LINE L2 3239 3304 -9 22 56 0 0 chr5 35816754 35816790 -167268742 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr5 35817138 35817168 -167268364 + AT_rich Low_complexity Low_complexity 1 30 0 3491 82 4 0 chr5 35817222 35817700 -167267832 + L1PA7 LINE L1 5675 6154 0 28 91 0 0 chr5 35818245 35818322 -167267210 + AT_rich Low_complexity Low_complexity 1 77 0 2541 49 0 0 chr5 35819236 35819540 -167265992 - AluY SINE Alu -7 304 1 633 158 0 0 chr5 35819555 35819675 -167265857 + CT-rich Low_complexity Low_complexity 2 121 0 221 171 0 0 chr5 35820545 35820613 -167264919 + (TA)n Simple_repeat Simple_repeat 1 68 0 1962 130 4 0 chr5 35821668 35821944 -167263588 + AluSx SINE Alu 1 277 -35 3110 218 15 62 chr5 35823348 35824043 -167261489 + L1MC3 LINE L1 5592 6233 -1552 562 113 94 9 chr5 35824043 35824149 -167261383 + L1PB2 LINE L1 6030 6144 -7 3110 218 15 62 chr5 35824149 35824384 -167261148 + L1MC3 LINE L1 6233 6478 -1307 489 244 171 49 chr5 35824393 35824639 -167260893 + MER57B LTR ERV1 1 276 -126 2030 133 29 32 chr5 35824746 35825122 -167260410 + THE1C LTR MaLR 1 375 0 2270 44 6 72 chr5 35825145 35825466 -167260066 + AluY SINE Alu 1 300 -11 346 189 0 0 chr5 35825541 35825615 -167259917 + MER57A LTR ERV1 330 403 0 1784 233 45 4 chr5 35825615 35826100 -167259432 + L1MC3 LINE L1 6485 6989 -796 1048 115 0 30 chr5 35826102 35826267 -167259265 + AluSg/x SINE Alu 153 312 0 2299 179 107 10 chr5 35826268 35826848 -167258684 + L1MC3 LINE L1 6980 7615 -170 3453 180 55 25 chr5 35827622 35828354 -167257178 + MER21B LTR ERV1 1 754 -109 1223 275 124 28 chr5 35828779 35829318 -167256214 + MLT1F1 LTR MaLR 3 567 0 1486 128 78 101 chr5 35829499 35829805 -167255727 + AluY SINE Alu 5 303 -8 266 292 31 54 chr5 35831166 35831296 -167254236 + L2 LINE L2 2956 3082 -190 213 226 38 0 chr5 35831515 35831568 -167253964 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 862 301 30 15 chr5 35832085 35832483 -167253049 - MER90 LTR ERV1 -9 566 163 2101 103 3 10 chr5 35833797 35834087 -167251445 + AluSq SINE Alu 1 288 -25 24 0 0 0 chr5 35834204 35834228 -167251304 + AT_rich Low_complexity Low_complexity 1 24 0 201 147 0 0 chr5 35834774 35834808 -167250724 + (T)n Simple_repeat Simple_repeat 1 34 0 2371 131 35 8 chr5 35835936 35836365 -167249167 - Tigger2 DNA MER2_type 0 2718 4 561 290 0 0 chr5 35836925 35837049 -167248483 - L2 LINE L2 -4 3309 3186 2338 78 0 3 chr5 35837453 35837749 -167247783 - AluY SINE Alu -16 295 1 182 190 0 17 chr5 35837941 35837999 -167247533 + CT-rich Low_complexity Low_complexity 4 60 0 222 205 0 0 chr5 35839661 35839700 -167245832 + (TG)n Simple_repeat Simple_repeat 1 39 0 265 373 130 22 chr5 35840497 35840819 -167244713 - L2 LINE L2 -1 3271 2915 22 35 0 0 chr5 35840963 35840992 -167244540 + AT_rich Low_complexity Low_complexity 1 29 0 308 243 58 48 chr5 35842326 35842429 -167243103 - MIR SINE MIR -48 214 111 205 179 0 0 chr5 35842606 35842645 -167242887 + T-rich Low_complexity Low_complexity 2 40 0 248 252 135 9 chr5 35843562 35843673 -167241859 - L2 LINE L2 -9 3263 3139 261 225 62 0 chr5 35844658 35844738 -167240794 - L1MC4 LINE L1 -1344 6698 6614 489 125 0 0 chr5 35844783 35844871 -167240661 + (TA)n Simple_repeat Simple_repeat 1 88 0 451 278 61 28 chr5 35846860 35847072 -167238460 + L1MB8 LINE L1 5947 6165 -13 373 234 117 45 chr5 35847082 35847236 -167238296 + L1MEd LINE L1 561 725 -5394 199 122 0 49 chr5 35847917 35847958 -167237574 + MIR SINE MIR 41 79 -129 710 259 42 36 chr5 35847967 35848160 -167237372 + MIR SINE MIR 48 241 -21 505 292 60 0 chr5 35848433 35848601 -167236931 + L2 LINE L2 2550 2727 -587 274 347 48 16 chr5 35849308 35849432 -167236100 + MIR SINE MIR 20 147 -61 390 260 24 55 chr5 35849711 35849838 -167235694 + MIR SINE MIR 31 153 -109 652 188 29 7 chr5 35849977 35850115 -167235417 - L1M1 LINE L1 -7416 149 9 524 140 11 0 chr5 35850153 35850246 -167235286 + GA-rich Low_complexity Low_complexity 1 94 0 656 184 32 130 chr5 35850296 35850417 -167235115 + L1MC/D LINE L1 5215 5346 -1041 2210 99 0 0 chr5 35850417 35850709 -167234823 + AluY SINE Alu 3 294 -17 656 184 32 130 chr5 35850709 35850992 -167234540 + L1MC/D LINE L1 5346 5571 -816 304 230 236 24 chr5 35851215 35851380 -167234152 - MIR SINE MIR 0 262 63 186 43 0 0 chr5 35851900 35851923 -167233609 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr5 35852896 35852926 -167232606 + AT_rich Low_complexity Low_complexity 1 30 0 201 147 0 0 chr5 35853235 35853269 -167232263 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 527 283 169 5 chr5 35855677 35855861 -167229671 + MIR SINE MIR 8 221 -41 452 296 24 19 chr5 35856804 35857010 -167228522 + L1M4 LINE L1 16 222 -6320 259 261 69 119 chr5 35857208 35857587 -167227945 + L1M4 LINE L1 515 874 -5668 1049 88 0 22 chr5 35857957 35858139 -167227393 + (TA)n Simple_repeat Simple_repeat 1 178 0 335 208 0 78 chr5 35858147 35858224 -167227308 - FLAM SINE Alu -13 120 50 239 148 45 0 chr5 35858227 35858315 -167227217 + (TA)n Simple_repeat Simple_repeat 1 92 0 674 177 0 48 chr5 35858317 35858441 -167227091 - FLAM_C SINE Alu -25 118 1 212 303 232 26 chr5 35858830 35859097 -167226435 - L2 LINE L2 -546 2768 2447 5375 161 21 9 chr5 35859119 35860218 -167225314 - L1MA8 LINE L1 -77 6214 5101 1654 182 7 3 chr5 35860603 35860894 -167224638 - AluJo SINE Alu -18 294 3 515 252 67 7 chr5 35861030 35861277 -167224255 - L1MC/D LINE L1 -340 5781 5572 2389 85 0 0 chr5 35861537 35861832 -167223700 - AluSg SINE Alu -15 295 1 415 257 76 35 chr5 35863621 35863668 -167221864 - MER5B DNA MER1_type 0 178 134 243 61 0 0 chr5 35863668 35863701 -167221831 + (TAA)n Simple_repeat Simple_repeat 1 33 0 415 257 76 35 chr5 35863701 35863824 -167221708 - MER5B DNA MER1_type -44 134 1 220 369 39 0 chr5 35864997 35865100 -167220432 + L2 LINE L2 2552 2658 -656 3012 195 39 60 chr5 35865138 35865888 -167219644 - L1MD2 LINE L1 -20 6339 5606 328 331 78 35 chr5 35865910 35866241 -167219291 + L2 LINE L2 2712 3048 -224 498 239 44 9 chr5 35866411 35866524 -167219008 + MLT1E LTR MaLR 86 202 -391 384 190 0 0 chr5 35866529 35866608 -167218924 + GA-rich Low_complexity Low_complexity 1 79 0 1235 257 22 19 chr5 35866614 35866929 -167218603 + MLT1E LTR MaLR 209 524 -69 2382 85 3 0 chr5 35868055 35868349 -167217183 - AluSg SINE Alu -14 296 2 21 0 0 0 chr5 35868675 35868696 -167216836 + AT_rich Low_complexity Low_complexity 1 21 0 454 116 52 12 chr5 35868889 35869061 -167216471 + (TA)n Simple_repeat Simple_repeat 2 180 0 9472 194 12 22 chr5 35869135 35870435 -167215097 + L1PA15 LINE L1 3304 4615 -1550 2051 144 5 44 chr5 35870435 35870824 -167214708 - THE1C LTR MaLR 0 375 2 9472 194 12 22 chr5 35870824 35871531 -167214001 + L1PA15 LINE L1 4615 5327 -838 2192 113 0 0 chr5 35871531 35871824 -167213708 + AluSg SINE Alu 1 293 -17 9472 194 12 22 chr5 35871824 35872657 -167212875 + L1PA15 LINE L1 5327 6161 -4 233 374 22 0 chr5 35873427 35873518 -167212014 - L2 LINE L2 -5 3308 3216 211 381 69 11 chr5 35873729 35873918 -167211614 - L2 LINE L2 -340 2974 2775 273 182 45 136 chr5 35874394 35874526 -167211006 - MLT1L LTR MaLR -279 336 217 2348 94 0 16 chr5 35875000 35875307 -167210225 + AluSg SINE Alu 2 303 -7 27 29 0 0 chr5 35875527 35875561 -167209971 + AT_rich Low_complexity Low_complexity 1 34 0 2580 82 6 6 chr5 35877386 35877740 -167207792 - L1PA8 LINE L1 -1 6171 5818 2140 94 0 7 chr5 35877740 35878047 -167207485 + L1P LINE L1 4464 4768 -1378 1043 311 102 78 chr5 35878516 35878694 -167206838 - L3 LINE CR1 -161 1416 1244 953 324 30 34 chr5 35878694 35879160 -167206372 + LTR16B LTR ERVL 1 464 0 1043 311 102 78 chr5 35879160 35879904 -167205628 - L3 LINE CR1 -333 1244 472 198 193 0 0 chr5 35880711 35880768 -167204764 + (TA)n Simple_repeat Simple_repeat 2 58 0 359 23 0 0 chr5 35880770 35880813 -167204719 + MADE1 DNA Mariner 3 45 -35 330 206 33 87 chr5 35880831 35880923 -167204609 + L1ME1 LINE L1 6012 6098 -68 24 0 0 0 chr5 35881077 35881101 -167204431 + AT_rich Low_complexity Low_complexity 1 24 0 2145 111 7 3 chr5 35881289 35881586 -167203946 - AluSq SINE Alu -15 298 1 980 242 89 3 chr5 35881612 35881926 -167203606 - L1ME2 LINE L1 -9 6155 5815 * 6063 137 17 1 chr5 35881918 35883715 -167201817 - L1PA11 LINE L1 -1 6876 5061 3031 262 67 58 chr5 35883720 35884165 -167201367 - L1M4 LINE L1 -2037 4109 3670 1879 199 52 40 chr5 35884165 35884662 -167200870 + MLT1D LTR MaLR 3 505 0 3031 262 67 58 chr5 35884662 35886064 -167199468 - L1M4 LINE L1 -2476 3670 2245 726 143 48 7 chr5 35886068 35886215 -167199317 + L1MA4 LINE L1 6015 6167 -133 6133 6 0 0 chr5 35886215 35886899 -167198633 + L1PA2 LINE L1 5469 6154 -1 631 224 39 0 chr5 35886923 35887079 -167198453 + L1MA4 LINE L1 6135 6296 -4 5352 209 9 2 chr5 35887138 35888294 -167197238 - L1PA11 LINE L1 -2864 3985 2821 2931 104 109 8 chr5 35888295 35888764 -167196768 - THE1C-int LTR MaLR -1064 516 1 1916 161 19 26 chr5 35888764 35889142 -167196390 - THE1C LTR MaLR 0 375 1 2403 232 21 10 chr5 35889142 35889749 -167195783 - L1PA11 LINE L1 -4212 2637 2024 303 287 73 49 chr5 35889753 35889917 -167195615 - L1MC4 LINE L1 -1296 6746 6579 204 200 0 0 chr5 35889924 35889969 -167195563 + (TA)n Simple_repeat Simple_repeat 1 45 0 8266 126 7 2 chr5 35889972 35891183 -167194349 - L1PA12 LINE L1 -4872 2709 1493 1160 333 62 27 chr5 35891184 35892109 -167193423 - L1MEc LINE L1 -5365 1031 75 285 292 172 82 chr5 35892242 35892533 -167192999 - L3 LINE CR1 -207 1370 1054 2281 110 0 13 chr5 35892757 35893066 -167192466 - AluSx SINE Alu -7 305 1 350 349 63 66 chr5 35893235 35893567 -167191965 + L2 LINE L2 2932 3262 -10 211 306 16 0 chr5 35893579 35893641 -167191891 - MIR SINE MIR -122 140 78 880 108 24 12 chr5 35894822 35894989 -167190543 + CT-rich Low_complexity Low_complexity 3 171 0 350 246 222 33 chr5 35894989 35895334 -167190198 - L1MC4 LINE L1 -480 5641 5322 25 51 0 0 chr5 35895334 35895373 -167190159 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr5 35895610 35895650 -167189882 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr5 35895855 35895877 -167189655 + AT_rich Low_complexity Low_complexity 1 22 0 244 318 77 53 chr5 35895920 35896090 -167189442 - L2 LINE L2 -38 3275 3102 367 286 0 0 chr5 35896157 35896241 -167189291 - MLT1D LTR MaLR -414 91 8 22 0 0 0 chr5 35896707 35896729 -167188803 + AT_rich Low_complexity Low_complexity 1 22 0 1664 196 0 14 chr5 35897430 35897716 -167187816 + AluJo SINE Alu 1 282 -30 216 0 0 0 chr5 35897719 35897743 -167187789 + (TAA)n Simple_repeat Simple_repeat 2 25 0 303 282 36 18 chr5 35898140 35898250 -167187282 - HAL1 LINE L1 -1435 1072 961 851 143 0 0 chr5 35899186 35899312 -167186220 + FLAM_C SINE Alu 11 136 -7 225 253 81 35 chr5 35899913 35900000 -167185532 - MIR SINE MIR -98 164 74 23 54 0 0 chr5 35900235 35900272 -167185260 + AT_rich Low_complexity Low_complexity 1 37 0 205 270 18 0 chr5 35901278 35901389 -167184143 + CT-rich Low_complexity Low_complexity 1 113 0 852 243 67 67 chr5 35901647 35901968 -167183564 - L1ME LINE L1 -637 5529 5208 4441 167 9 14 chr5 35901968 35902754 -167182778 - LTR39 LTR ERV1 0 783 2 852 243 67 67 chr5 35902754 35902956 -167182576 - L1ME LINE L1 -958 5208 5008 2054 257 50 10 chr5 35902981 35903465 -167182067 + L1ME1 LINE L1 5561 6073 -93 2838 135 2 21 chr5 35903465 35903901 -167181631 + MSTA LTR MaLR 1 428 0 2054 257 50 10 chr5 35903901 35903995 -167181537 + L1ME1 LINE L1 6073 6162 -4 225 65 0 0 chr5 35905031 35905062 -167180470 + (TC)n Simple_repeat Simple_repeat 2 32 0 1588 190 54 12 chr5 35905259 35905590 -167179942 - MLT1A1 LTR MaLR -11 354 10 2483 106 22 11 chr5 35905947 35906307 -167179225 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr5 35906436 35906458 -167179074 + AT_rich Low_complexity Low_complexity 1 22 0 282 206 0 0 chr5 35907565 35907628 -167177904 + (TG)n Simple_repeat Simple_repeat 2 64 0 679 335 42 38 chr5 35908276 35908703 -167176829 + L1M3c LINE L1 1358 1786 -5710 2540 225 33 41 chr5 35908853 35909945 -167175587 + L1M3c LINE L1 1876 2975 -4521 2227 128 48 31 chr5 35909945 35910303 -167175229 + THE1B LTR MaLR 1 364 0 11460 94 11 4 chr5 35910303 35911872 -167173660 + THE1B-int LTR MaLR 1 1580 0 2209 107 57 28 chr5 35911872 35912226 -167173306 + THE1B LTR MaLR 1 364 0 2540 225 33 41 chr5 35912226 35912246 -167173286 + L1M3c LINE L1 2973 2925 -4571 357 24 0 0 chr5 35912246 35912288 -167173244 + (TA)n Simple_repeat Simple_repeat 1 42 0 2540 225 33 41 chr5 35912288 35912342 -167173190 + L1M3c LINE L1 2924 2977 -4519 3157 278 64 15 chr5 35912347 35913980 -167171552 + L1M3c LINE L1 2881 4612 -2953 7873 164 18 6 chr5 35914000 35916545 -167168987 - L1MA2 LINE L1 0 6304 3729 3772 222 31 60 chr5 35916550 35917002 -167168530 + L1M3c LINE L1 4618 5081 -2484 303 67 0 0 chr5 35917002 35917047 -167168485 + MADE1 DNA Mariner 1 45 -35 3772 222 31 60 chr5 35917047 35918315 -167167217 + L1M3c LINE L1 5081 6294 -1271 1290 71 0 30 chr5 35918318 35918487 -167167045 - AluY SINE Alu -147 164 1 248 185 19 0 chr5 35918488 35918542 -167166990 + L1MA9 LINE L1 6253 6307 -5 614 267 82 5 chr5 35918694 35918889 -167166643 - L1MEc LINE L1 -6155 241 32 345 200 148 9 chr5 35918936 35919051 -167166481 - LTR16C LTR ERVL -24 467 337 21 0 0 0 chr5 35919194 35919215 -167166317 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr5 35919352 35919398 -167166134 + AT_rich Low_complexity Low_complexity 1 46 0 834 296 119 74 chr5 35920385 35921353 -167164179 - L2 LINE L2 0 3313 2288 314 338 44 44 chr5 35921357 35921561 -167163971 - L2 LINE L2 -3103 211 8 1586 193 0 24 chr5 35922019 35922314 -167163218 - AluJo SINE Alu -24 288 1 794 246 66 36 chr5 35922410 35922715 -167162817 - HAL1 LINE L1 -2192 315 2 29 47 0 0 chr5 35923569 35923612 -167161920 + AT_rich Low_complexity Low_complexity 1 43 0 1531 292 85 4 chr5 35923845 35924614 -167160918 + MER69 DNA AcHobo 134 1061 -1465 1105 191 121 59 chr5 35924620 35924974 -167160558 - LTR37A LTR ERV1 0 426 45 1016 257 5 0 chr5 35924974 35925196 -167160336 - MER58A DNA MER1_type -1 223 1 1105 191 121 59 chr5 35925196 35925229 -167160303 - LTR37A LTR ERV1 -381 45 15 22 35 0 0 chr5 35926001 35926030 -167159502 + AT_rich Low_complexity Low_complexity 1 29 0 318 289 39 95 chr5 35926235 35926540 -167158992 + L1M3c LINE L1 6531 6818 -747 203 137 59 20 chr5 35926561 35926612 -167158920 + A-rich Low_complexity Low_complexity 5 57 0 2038 153 5 24 chr5 35926914 35927292 -167158240 - L1PB1 LINE L1 0 6151 5781 310 267 58 0 chr5 35927307 35927393 -167158139 - L1MC4 LINE L1 -1336 6706 6616 3526 155 24 3 chr5 35927394 35928358 -167157174 - L1P5 LINE L1 -362 6505 5526 * 8139 128 30 118 chr5 35928345 35929711 -167155821 - L1P5 LINE L1 -5289 1574 88 2115 123 16 7 chr5 35929711 35930020 -167155512 - AluSx SINE Alu 0 312 1 8139 128 30 118 chr5 35930020 35930280 -167155252 - L1P5 LINE L1 -6775 88 -193 2318 100 47 33 chr5 35930280 35930639 -167154893 + THE1B LTR MaLR 1 364 0 11636 93 2 12 chr5 35930639 35931919 -167153613 + THE1B-int LTR MaLR 1 1265 -315 2336 95 0 28 chr5 35931919 35932236 -167153296 + AluY SINE Alu 2 309 -2 11636 93 2 12 chr5 35932236 35932550 -167152982 + THE1B-int LTR MaLR 1265 1580 0 1794 157 53 36 chr5 35932552 35932908 -167152624 + THE1B LTR MaLR 3 364 0 8139 128 30 118 chr5 35932908 35933002 -167152530 - L1P5 LINE L1 -6760 103 2 377 95 16 0 chr5 35934116 35934179 -167151353 + (TG)n Simple_repeat Simple_repeat 1 64 0 1531 249 98 32 chr5 35936309 35936959 -167148573 + L1ME2 LINE L1 5453 6145 -19 2137 123 3 7 chr5 35937053 35937355 -167148177 + AluSq SINE Alu 1 301 -12 360 247 10 10 chr5 35937429 35937526 -167148006 + MER94 DNA DNA 5 101 -33 222 283 0 0 chr5 35937628 35937674 -167147858 + (TG)n Simple_repeat Simple_repeat 1 46 0 295 359 39 35 chr5 35938155 35938386 -167147146 - L2 LINE L2 -215 3057 2826 492 285 186 40 chr5 35938682 35938935 -167146597 - MLT1H LTR MaLR 0 549 260 769 258 114 54 chr5 35939632 35940198 -167145334 + MLT1F1 LTR MaLR 14 593 -2 2052 84 3 52 chr5 35940489 35940661 -167144871 - AluSg SINE Alu -17 293 141 2334 92 0 0 chr5 35940661 35940954 -167144578 - AluY SINE Alu -16 295 3 2052 84 3 52 chr5 35940954 35941089 -167144443 - AluSg SINE Alu -169 141 1 892 144 8 0 chr5 35941089 35941221 -167144311 - AluSg1 SINE Alu -176 133 1 182 121 0 30 chr5 35941599 35941632 -167143900 + L2 LINE L2 2315 2346 -968 938 208 0 0 chr5 35942837 35942996 -167142536 + FRAM SINE Alu 1 159 -7 249 234 47 0 chr5 35943205 35943269 -167142263 - L2 LINE L2 -342 2930 2864 22 35 0 0 chr5 35944330 35944359 -167141173 + AT_rich Low_complexity Low_complexity 1 29 0 459 73 24 24 chr5 35945422 35945504 -167140028 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 2666 90 3 0 chr5 35945895 35946262 -167139270 - L1PB1 LINE L1 -2 6149 5782 264 167 0 0 chr5 35946262 35946310 -167139222 + (TA)n Simple_repeat Simple_repeat 1 48 0 256 219 98 0 chr5 35946311 35946393 -167139139 + L1MC4 LINE L1 6614 6703 -1339 228 111 93 0 chr5 35946362 35946416 -167139116 + L1MCa LINE L1 2006 2064 -4362 * 210 191 0 0 chr5 35946423 35946470 -167139062 + (TA)n Simple_repeat Simple_repeat 2 48 0 225 143 0 0 chr5 35946617 35946659 -167138873 + LTR66 LTR ERVL 398 439 -171 990 156 0 0 chr5 35946668 35946841 -167138691 + (TA)n Simple_repeat Simple_repeat 2 174 0 6870 188 16 8 chr5 35946841 35948885 -167136647 - L1P5 LINE L1 -371 5780 3726 1568 177 4 4 chr5 35949428 35949688 -167135844 + AluSq SINE Alu 1 260 -53 300 303 11 51 chr5 35950258 35950436 -167135096 + LTR16C LTR ERVL 321 491 0 226 255 85 32 chr5 35950475 35950549 -167134983 - L2 LINE L2 -76 3237 3156 248 89 0 22 chr5 35950549 35950594 -167134938 + (CA)n Simple_repeat Simple_repeat 2 45 0 226 255 85 32 chr5 35950594 35950613 -167134919 - L2 LINE L2 -157 3156 3139 1166 167 19 23 chr5 35950644 35950860 -167134672 + AluJb SINE Alu 82 296 -16 225 164 224 0 chr5 35952029 35952096 -167133436 + L1MC4 LINE L1 6617 6698 -1344 274 285 61 42 chr5 35952789 35952954 -167132578 + L1ME3A LINE L1 5959 6126 -44 972 273 77 3 chr5 35953274 35953640 -167131892 - L1ME3A LINE L1 -286 5884 5492 206 103 0 26 chr5 35954590 35954629 -167130903 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 657 173 47 8 chr5 35954667 35954794 -167130738 + FRAM SINE Alu 9 140 -36 2433 51 0 29 chr5 35955948 35956264 -167129268 - AluY SINE Alu -4 307 1 2344 62 7 0 chr5 35956511 35956824 -167128708 - AluY SINE Alu 0 311 1 2982 134 4 8 chr5 35957418 35957894 -167127638 - MER41B LTR ERV1 -159 476 3 21 0 0 0 chr5 35958049 35958070 -167127462 + AT_rich Low_complexity Low_complexity 1 21 0 1956 166 32 54 chr5 35960359 35960800 -167124732 - LTR49 LTR ERV1 0 595 165 10471 29 1 2 chr5 35960972 35962204 -167123328 - HERVK LTR ERVK -6013 1230 1 7858 52 15 2 chr5 35962207 35963161 -167122371 - LTR5 LTR ERVK -3 966 1 13474 78 4 3 chr5 35963161 35965043 -167120489 - L1P LINE L1 -2271 3875 1993 604 324 26 10 chr5 35965159 35965468 -167120064 + L1M4 LINE L1 4020 4333 -1813 12039 175 37 22 chr5 35965778 35968092 -167117440 + L1M1 LINE L1 8 2355 -5210 12574 133 113 18 chr5 35968277 35968711 -167116821 - L1PBa LINE L1 -3543 3319 2927 2311 112 3 0 chr5 35968711 35969016 -167116516 - AluSx SINE Alu -6 306 1 12574 133 113 18 chr5 35969016 35971034 -167114498 - L1PBa LINE L1 -3935 2927 637 1141 141 22 0 chr5 35971035 35971219 -167114313 - L1PBa LINE L1 -6675 188 1 1196 180 142 15 chr5 35971284 35971551 -167113981 + MLT1A1 LTR MaLR 1 301 -64 1319 222 2 7 chr5 35971851 35972261 -167113271 + LTR40a LTR ERVL 1 517 -2 683 277 5 5 chr5 35973686 35973870 -167111662 - MLT2F LTR ERVL -4 659 476 184 296 74 0 chr5 35974265 35974346 -167111186 + MIR SINE MIR 104 190 -72 269 193 117 111 chr5 35974651 35974822 -167110710 - L1ME4a LINE L1 -3 6118 5947 32 0 0 0 chr5 35976209 35976241 -167109291 + AT_rich Low_complexity Low_complexity 1 32 0 1196 216 0 11 chr5 35976558 35976831 -167108701 + L1MD3 LINE L1 7725 7994 -1 306 350 29 0 chr5 35977148 35977293 -167108239 - L1ME4a LINE L1 -543 5578 5427 213 378 149 15 chr5 35977534 35977989 -167107543 - L2 LINE L2 -574 2740 2225 910 216 47 0 chr5 35978019 35978209 -167107323 - MER20 DNA MER1_type -20 199 1 312 278 73 52 chr5 35978301 35978492 -167107040 - L2 LINE L2 -1251 2063 1869 3282 206 76 25 chr5 35978914 35979791 -167105741 - MER63C DNA MER1_type 0 930 9 2234 169 58 29 chr5 35980607 35980805 -167104727 + MLT1C LTR MaLR 1 192 -275 267 31 0 0 chr5 35980805 35980837 -167104695 + (CA)n Simple_repeat Simple_repeat 2 33 0 2234 169 58 29 chr5 35980837 35981087 -167104445 + MLT1C LTR MaLR 192 462 -5 478 246 0 36 chr5 35981154 35981264 -167104268 + L2 LINE L2 3160 3265 -7 207 0 0 0 chr5 35981702 35981725 -167103807 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 411 141 0 0 chr5 35982447 35982525 -167103007 + (CA)n Simple_repeat Simple_repeat 2 79 0 308 206 21 41 chr5 35982777 35982874 -167102658 + L1MEd LINE L1 1123 1217 -4902 390 98 7 27 chr5 35984082 35984174 -167101358 + L1PA10 LINE L1 6097 6172 0 235 257 104 45 chr5 35984401 35984593 -167100939 + L1MEd LINE L1 1012 1218 -4901 291 114 0 0 chr5 35984593 35984637 -167100895 + (CA)n Simple_repeat Simple_repeat 2 45 0 331 315 206 11 chr5 35985709 35985976 -167099556 + L1ME LINE L1 5501 5819 -302 2328 98 3 0 chr5 35987088 35987383 -167098149 - AluSg SINE Alu -14 296 1 783 162 214 0 chr5 35988326 35988499 -167097033 + MER2 DNA MER2_type 1 210 -135 25 51 0 0 chr5 35988506 35988545 -167096987 + AT_rich Low_complexity Low_complexity 1 39 0 2535 39 0 16 chr5 35988942 35989247 -167096285 - AluY SINE Alu -11 300 1 23 33 0 0 chr5 35989659 35989689 -167095843 + AT_rich Low_complexity Low_complexity 1 30 0 276 154 0 0 chr5 35989923 35989975 -167095557 + (CA)n Simple_repeat Simple_repeat 2 53 0 796 256 31 75 chr5 35990272 35990565 -167094967 - LTR40a LTR ERVL -118 401 122 188 327 133 40 chr5 35994162 35994312 -167091220 + MIR SINE MIR 98 261 -1 748 138 0 0 chr5 35994482 35994591 -167090941 - MLT1A1 LTR MaLR -256 109 1 13263 191 31 18 chr5 35996585 36000362 -167085170 + L1MA4A LINE L1 6 4132 -2873 2381 90 0 3 chr5 36000362 36000663 -167084869 + AluSc SINE Alu 1 300 -9 13263 191 31 18 chr5 36000663 36003578 -167081954 + L1MA4A LINE L1 4132 7005 0 2060 118 7 14 chr5 36003949 36004245 -167081287 - AluSx SINE Alu -16 296 3 306 0 0 0 chr5 36004397 36004431 -167081101 + (CA)n Simple_repeat Simple_repeat 2 35 0 341 400 43 21 chr5 36004461 36004836 -167080696 + L2 LINE L2 1263 1645 -1669 189 348 174 22 chr5 36004952 36005228 -167080304 - L2 LINE L2 -2787 527 210 1423 228 47 28 chr5 36006221 36006328 -167079204 + MLT2D LTR ERVL 1 104 -310 1602 171 94 3 chr5 36006328 36006637 -167078895 - MER1B DNA MER1_type 0 337 1 1423 228 47 28 chr5 36006637 36006888 -167078644 + MLT2D LTR ERVL 104 366 -48 184 186 34 0 chr5 36006942 36007001 -167078531 + GA-rich Low_complexity Low_complexity 2 62 0 1649 116 64 34 chr5 36007067 36007334 -167078198 + THE1B LTR MaLR 1 275 -89 501 159 34 0 chr5 36007372 36007460 -167078072 - Tigger3(Golem) DNA MER2_type -61 2968 2878 323 112 0 41 chr5 36007475 36007573 -167077959 + (TA)n Simple_repeat Simple_repeat 2 95 0 549 46 92 0 chr5 36007575 36007662 -167077870 - Tigger3(Golem) DNA MER2_type -164 2865 2771 486 201 27 134 chr5 36007659 36007722 -167077810 - Tigger3(Golem) DNA MER2_type -1089 142 103 * 2194 101 14 0 chr5 36007722 36008018 -167077514 - AluSp SINE Alu -13 300 1 486 201 27 134 chr5 36008018 36008103 -167077429 - Tigger3(Golem) DNA MER2_type -1128 103 10 236 139 0 0 chr5 36008130 36008166 -167077366 + MLT2D LTR ERVL 351 386 -11 188 340 100 10 chr5 36009444 36009544 -167075988 + MIR SINE MIR 32 140 -68 12088 159 36 43 chr5 36010251 36013371 -167072161 - L1PB1 LINE L1 -1 6866 3726 1325 108 98 0 chr5 36013371 36013575 -167071957 - AluSp SINE Alu -4 309 86 12088 159 36 43 chr5 36013575 36016984 -167068548 - L1PB1 LINE L1 -3141 3726 53 1269 157 4 4 chr5 36018245 36018493 -167067039 + L1MA4 LINE L1 6044 6291 -9 27 0 0 0 chr5 36018495 36018522 -167067010 + AT_rich Low_complexity Low_complexity 1 27 0 2855 202 53 90 chr5 36018939 36019849 -167065683 + L1MB8 LINE L1 5291 6166 -12 2031 177 51 17 chr5 36019930 36020342 -167065190 + MSTB LTR MaLR 1 426 0 187 120 20 20 chr5 36021463 36021513 -167064019 + (TA)n Simple_repeat Simple_repeat 1 50 0 1099 318 6 8 chr5 36022906 36023264 -167062268 + L1MCb LINE L1 7 363 -5682 2237 66 15 0 chr5 36023822 36024094 -167061438 + AluSq SINE Alu 38 313 0 876 206 4 79 chr5 36025489 36025659 -167059873 + MER20 DNA MER1_type 3 153 -66 2257 196 75 14 chr5 36025659 36026102 -167059430 + MER70A LTR ERVL 3 472 0 876 206 4 79 chr5 36026102 36026159 -167059373 + MER20 DNA MER1_type 153 213 -6 269 346 74 29 chr5 36026536 36026848 -167058684 + L2 LINE L2 1836 2161 -1153 298 342 17 8 chr5 36026853 36026970 -167058562 + L2 LINE L2 2303 2420 -894 851 295 85 19 chr5 36026985 36027398 -167058134 - MLT1J LTR MaLR 0 511 72 250 243 68 0 chr5 36028554 36028628 -167056904 - MIR SINE MIR 0 262 184 2116 124 26 34 chr5 36028874 36029252 -167056280 - THE1C LTR MaLR 0 375 1 201 121 0 0 chr5 36029396 36029429 -167056103 + (TC)n Simple_repeat Simple_repeat 1 33 0 325 360 86 8 chr5 36029598 36029959 -167055573 + L2 LINE L2 1599 1987 -1327 438 20 0 0 chr5 36030154 36030205 -167055327 + (TA)n Simple_repeat Simple_repeat 2 52 0 379 275 100 0 chr5 36030760 36030960 -167054572 - HAL1 LINE L1 -1175 1332 1113 716 168 15 0 chr5 36030960 36031091 -167054441 - MLT1D LTR MaLR -2 503 371 2602 217 42 109 chr5 36031091 36032148 -167053384 - MER52A LTR ERV1 0 1755 734 267 120 80 0 chr5 36032149 36032199 -167053333 - MLT2A1 LTR ERVL 0 453 400 3074 81 5 5 chr5 36032243 36032652 -167052880 - MLT2A1 LTR ERVL -35 409 1 615 291 0 0 chr5 36032681 36032822 -167052710 - MER52A LTR ERV1 -955 800 660 942 234 63 79 chr5 36032824 36033204 -167052328 - MLT1D LTR MaLR -131 374 1 201 74 0 0 chr5 36033222 36033249 -167052283 + (T)n Simple_repeat Simple_repeat 1 27 0 256 258 36 82 chr5 36033267 36033461 -167052071 - HAL1 LINE L1 -1454 1053 869 1920 158 35 30 chr5 36033848 36034221 -167051311 - THE1C LTR MaLR 0 375 1 327 302 60 37 chr5 36035914 36036203 -167049329 - MLT1I LTR MaLR -19 390 59 199 348 33 22 chr5 36036299 36036391 -167049141 - MIR SINE MIR -151 111 19 26 30 0 0 chr5 36037139 36037172 -167048360 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr5 36037608 36037637 -167047895 + AT_rich Low_complexity Low_complexity 1 29 0 24 91 0 0 chr5 36037712 36037778 -167047754 + AT_rich Low_complexity Low_complexity 1 66 0 23 0 0 0 chr5 36037791 36037814 -167047718 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr5 36038535 36038557 -167046975 + AT_rich Low_complexity Low_complexity 1 22 0 2474 58 0 0 chr5 36038865 36039159 -167046373 + AluY SINE Alu 3 296 -15 252 322 96 20 chr5 36039176 36039322 -167046210 + MER5A DNA MER1_type 1 157 -32 22 35 0 0 chr5 36039480 36039509 -167046023 + AT_rich Low_complexity Low_complexity 1 29 0 625 277 30 15 chr5 36040026 36040228 -167045304 - MIR SINE MIR -37 225 21 744 218 20 0 chr5 36041086 36041233 -167044299 - MLT1A1 LTR MaLR 0 365 216 1349 194 106 27 chr5 36041267 36041596 -167043936 - MLT1A2 LTR MaLR -19 355 1 292 224 0 45 chr5 36041770 36041837 -167043695 - L2 LINE L2 0 3313 3250 185 254 83 94 chr5 36042299 36042480 -167043052 - L2 LINE L2 -22 3291 3113 1470 214 127 24 chr5 36043554 36043933 -167041599 + MER47B DNA MER2_type 1 418 0 2299 87 0 6 chr5 36043959 36044270 -167041262 - AluSc SINE Alu 0 309 1 782 169 0 92 chr5 36044429 36044613 -167040919 + FRAM SINE Alu 3 169 -7 34 24 0 0 chr5 36045313 36045354 -167040178 + AT_rich Low_complexity Low_complexity 1 41 0 501 276 80 42 chr5 36045556 36045795 -167039737 + MIR SINE MIR 15 262 0 6056 89 29 1 chr5 36046121 36047180 -167038352 + L1PA14 LINE L1 5067 6150 -11 510 17 0 0 chr5 36047248 36047307 -167038225 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2015 125 0 0 chr5 36047309 36047588 -167037944 - AluSg SINE Alu -31 279 1 3293 103 2 16 chr5 36047632 36048129 -167037403 + L1PB1 LINE L1 5662 6151 0 1727 176 10 13 chr5 36049042 36049348 -167036184 - AluJb SINE Alu -2 310 6 1507 238 75 55 chr5 36049379 36049622 -167035910 - L1ME1 LINE L1 -76 6090 5853 2066 120 7 0 chr5 36049622 36049913 -167035619 - AluSc SINE Alu -16 293 1 1507 238 75 55 chr5 36049913 36050232 -167035300 - L1ME1 LINE L1 -313 5853 5517 321 312 37 28 chr5 36050707 36050816 -167034716 + HAL1 LINE L1 824 933 -1574 735 233 19 0 chr5 36050816 36050975 -167034557 - MLT1E1 LTR MaLR -1 653 492 1022 161 0 0 chr5 36050979 36051134 -167034398 + FRAM SINE Alu 4 158 -18 508 301 109 6 chr5 36051134 36051290 -167034242 - MLT1E1 LTR MaLR -154 439 268 1535 129 41 110 chr5 36051301 36051619 -167033913 - MER1B DNA MER1_type 0 339 44 248 269 65 21 chr5 36051666 36051759 -167033773 - MLT1E1 LTR MaLR -358 235 139 322 264 41 41 chr5 36051829 36051950 -167033582 + HAL1 LINE L1 1832 1952 -555 324 304 47 32 chr5 36052018 36052271 -167033261 + HAL1 LINE L1 2138 2394 -113 26 0 0 0 chr5 36052286 36052312 -167033220 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr5 36052442 36052468 -167033064 + AT_rich Low_complexity Low_complexity 1 26 0 296 307 69 16 chr5 36052714 36052903 -167032629 - MIR SINE MIR -15 247 49 267 114 0 0 chr5 36053802 36053846 -167031686 + (TG)n Simple_repeat Simple_repeat 2 45 0 266 67 22 0 chr5 36054188 36054233 -167031299 + (TG)n Simple_repeat Simple_repeat 2 47 0 28 0 0 0 chr5 36055000 36055028 -167030504 + AT_rich Low_complexity Low_complexity 1 28 0 228 214 0 0 chr5 36055139 36055195 -167030337 + (TG)n Simple_repeat Simple_repeat 2 57 0 190 256 35 93 chr5 36055785 36055871 -167029661 - MIR SINE MIR -54 208 128 30 27 0 0 chr5 36058368 36058405 -167027127 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr5 36058631 36058658 -167026874 + AT_rich Low_complexity Low_complexity 1 27 0 1518 207 0 0 chr5 36058658 36058929 -167026603 - AluJb SINE Alu -18 294 24 25 31 0 0 chr5 36058939 36058971 -167026561 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr5 36059465 36059486 -167026046 + (TAA)n Simple_repeat Simple_repeat 1 21 0 266 241 247 13 chr5 36059489 36059647 -167025885 - MIR SINE MIR -2 260 66 22 35 0 0 chr5 36059666 36059695 -167025837 + AT_rich Low_complexity Low_complexity 1 29 0 865 163 0 0 chr5 36059706 36059847 -167025685 - AluJb SINE Alu -14 298 158 1985 249 50 23 chr5 36060106 36060725 -167024807 - L1ME2 LINE L1 -10 6154 5519 28 29 0 0 chr5 36061006 36061041 -167024491 + AT_rich Low_complexity Low_complexity 1 35 0 8234 188 26 60 chr5 36062014 36064758 -167020774 - L1MA7 LINE L1 -2 6875 4207 751 174 0 0 chr5 36064758 36064879 -167020653 - FLAM_C SINE Alu -22 121 1 8234 188 26 60 chr5 36064879 36065234 -167020298 - L1MA7 LINE L1 -2670 4207 3841 1563 270 35 53 chr5 36065231 36065980 -167019552 - L1MA7 LINE L1 -5581 1072 1 * 22 0 0 0 chr5 36066035 36066057 -167019475 + AT_rich Low_complexity Low_complexity 1 22 0 1363 291 116 29 chr5 36066376 36067215 -167018317 - L2 LINE L2 0 3313 2393 218 376 81 16 chr5 36067213 36067399 -167018133 + L2 LINE L2 2556 2753 -561 * 712 200 0 23 chr5 36067694 36067824 -167017708 + FLAM_C SINE Alu 2 128 -5 1113 264 95 19 chr5 36068006 36068385 -167017147 - MLT1F LTR MaLR 0 542 135 234 348 0 42 chr5 36068451 36068569 -167016963 - MLT1F LTR MaLR -429 113 1 295 269 101 8 chr5 36068570 36068689 -167016843 - MLT1F-int LTR MaLR -1 1734 1605 212 143 0 41 chr5 36068864 36068913 -167016619 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 2204 80 16 0 chr5 36069410 36069721 -167015811 - L1PA7 LINE L1 0 6154 5839 5625 72 4 1 chr5 36069721 36070488 -167015044 - L1P LINE L1 -2476 3670 2902 4968 176 36 42 chr5 36070487 36071548 -167013984 + L1P LINE L1 11 1064 -5082 * 345 47 0 0 chr5 36071751 36071794 -167013738 + (TG)n Simple_repeat Simple_repeat 1 43 0 202 220 0 20 chr5 36072502 36072552 -167012980 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 24 0 0 0 chr5 36072772 36072796 -167012736 + AT_rich Low_complexity Low_complexity 1 24 0 2399 76 0 3 chr5 36072861 36073162 -167012370 - AluY SINE Alu -11 300 1 211 260 94 10 chr5 36073695 36073791 -167011741 - MIR SINE MIR -3 259 156 188 316 84 11 chr5 36073841 36073936 -167011596 - MIR SINE MIR -57 151 50 1226 259 86 40 chr5 36073955 36074565 -167010967 - MER69 DNA AcHobo -1 2525 1944 183 42 0 0 chr5 36074565 36074589 -167010943 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1226 259 86 40 chr5 36074589 36074830 -167010702 - MER69 DNA AcHobo -582 1944 294 438 289 9 0 chr5 36074832 36074946 -167010586 - MER94 DNA DNA -2 132 18 31 26 0 0 chr5 36076008 36076046 -167009486 + AT_rich Low_complexity Low_complexity 1 38 0 282 283 33 33 chr5 36076133 36076253 -167009279 - HAL1 LINE L1 -138 2369 2250 481 30 30 0 chr5 36076958 36077025 -167008507 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 465 83 111 0 chr5 36077350 36077422 -167008110 - MADE1 DNA Mariner 0 80 1 1710 279 108 30 chr5 36077453 36078660 -167006872 + L1MC4 LINE L1 6483 7900 -142 315 85 0 0 chr5 36078663 36078710 -167006822 + (TG)n Simple_repeat Simple_repeat 2 48 0 679 253 95 63 chr5 36078710 36079280 -167006252 - L1MEc LINE L1 -2700 3515 2928 2493 59 0 0 chr5 36079283 36079586 -167005946 - AluY SINE Alu -8 303 1 289 256 37 0 chr5 36079631 36079713 -167005819 - L1MEc LINE L1 -3427 2788 2704 831 253 12 52 chr5 36079784 36080128 -167005404 - L1MEc LINE L1 -3652 2563 2234 336 333 73 38 chr5 36080152 36080413 -167005119 - L1MEc LINE L1 -5340 1056 787 892 330 44 25 chr5 36081440 36081801 -167003731 - MLT1J LTR MaLR -143 368 1 747 257 41 28 chr5 36083147 36083365 -167002167 - MIR SINE MIR -21 241 21 1922 145 30 36 chr5 36085041 36085406 -167000126 + THE1B LTR MaLR 1 363 -1 1776 159 32 29 chr5 36085741 36086050 -166999482 + AluSx SINE Alu 3 312 0 1060 226 23 0 chr5 36087174 36087391 -166998141 + AluJo SINE Alu 71 292 -20 2240 100 7 7 chr5 36087450 36087750 -166997782 - AluSc SINE Alu -9 300 1 24 53 0 0 chr5 36088195 36088233 -166997299 + AT_rich Low_complexity Low_complexity 1 38 0 207 47 0 139 chr5 36088443 36088486 -166997046 + (A)n Simple_repeat Simple_repeat 1 37 0 349 278 11 11 chr5 36089071 36089161 -166996371 + MIR SINE MIR 3 92 -170 485 298 60 0 chr5 36089269 36089420 -166996112 + MIR SINE MIR 86 245 -17 280 313 97 31 chr5 36089630 36089825 -166995707 - L1ME LINE L1 -461 5660 5453 321 136 0 17 chr5 36089846 36089905 -166995627 - MLT1E2 LTR MaLR -2 622 565 204 40 0 0 chr5 36089950 36089975 -166995557 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 1114 236 171 104 chr5 36089975 36090480 -166995052 - MLT1E2 LTR MaLR -53 571 9 378 307 17 22 chr5 36090485 36090664 -166994868 - L1ME LINE L1 -686 5435 5258 5597 118 3 7 chr5 36090725 36091591 -166993941 - L1PB1 LINE L1 -2 6852 5990 667 117 29 0 chr5 36091574 36091677 -166993855 - L1PB1 LINE L1 -4466 2383 2278 * 22 0 0 0 chr5 36092528 36092550 -166992982 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr5 36093879 36093903 -166991629 + AT_rich Low_complexity Low_complexity 1 24 0 279 325 12 0 chr5 36093917 36093997 -166991535 + MIR3 SINE MIR 89 169 -39 2170 114 7 0 chr5 36094262 36094559 -166990973 + AluSp SINE Alu 1 299 -14 3591 30 5 0 chr5 36094952 36095381 -166990151 - L1PA4 LINE L1 -2 6153 5723 339 89 0 0 chr5 36095381 36095426 -166990106 + L1PA4 LINE L1 5681 5725 -430 23 0 0 0 chr5 36095431 36095454 -166990078 + AT_rich Low_complexity Low_complexity 1 23 0 293 26 0 0 chr5 36095454 36095492 -166990040 + L1HS LINE L1 5866 5903 -252 1611 102 0 31 chr5 36095512 36095768 -166989764 - L1PA13 LINE L1 -19 6144 5897 1919 150 7 10 chr5 36095858 36096164 -166989368 - AluSx SINE Alu -7 305 1 568 223 42 24 chr5 36097820 36097986 -166987546 - LTR33 LTR ERVL -18 503 335 377 273 20 33 chr5 36098084 36098234 -166987298 - LTR33 LTR ERVL -373 148 1 777 241 84 33 chr5 36098353 36098587 -166986945 - L1MA9 LINE L1 -38 6274 6053 2635 17 0 0 chr5 36098587 36098880 -166986652 + AluYa5 SINE Alu 1 293 -18 777 241 84 33 chr5 36098880 36099010 -166986522 - L1MA9 LINE L1 -259 6053 5802 1868 153 123 50 chr5 36099341 36099740 -166985792 + MSTA LTR MaLR 1 428 0 545 315 113 56 chr5 36100075 36100685 -166984847 + L1ME4a LINE L1 5320 5964 -157 382 344 114 13 chr5 36101591 36101818 -166983714 - MIR SINE MIR 0 262 13 3214 160 8 4 chr5 36101920 36102445 -166983087 + MER1A DNA MER1_type 1 527 0 198 0 0 0 chr5 36102881 36102903 -166982629 + (T)n Simple_repeat Simple_repeat 1 22 0 186 150 0 0 chr5 36104126 36104166 -166981366 + (TTTTTA)n Simple_repeat Simple_repeat 2 41 0 4898 129 36 4 chr5 36104181 36104966 -166980566 - L1PA16 LINE L1 -5 6161 5352 7645 26 0 0 chr5 36104978 36106052 -166979480 - L1PA3 LINE L1 -10 6145 5072 2423 246 108 10 chr5 36106555 36107418 -166978114 + L1M4 LINE L1 4110 5056 -1090 636 238 110 0 chr5 36107428 36107592 -166977940 + MER58A DNA MER1_type 43 224 0 197 128 0 26 chr5 36108110 36108149 -166977383 + (TTCCC)n Simple_repeat Simple_repeat 2 39 0 381 318 110 42 chr5 36108271 36108626 -166976906 - L1M4 LINE L1 -2167 3979 3601 28 29 0 0 chr5 36108764 36108799 -166976733 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr5 36109688 36109710 -166975822 + AT_rich Low_complexity Low_complexity 1 22 0 2273 78 3 3 chr5 36109902 36110197 -166975335 - AluY SINE Alu -16 295 1 203 175 0 0 chr5 36110395 36110435 -166975097 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2331 54 11 0 chr5 36110839 36111173 -166974359 - AluY SINE Alu 0 337 1 2690 130 23 23 chr5 36111398 36111830 -166973702 - Tigger2a DNA MER2_type 0 434 3 574 303 19 6 chr5 36111843 36112005 -166973527 + MER91A DNA MER1_type 10 173 -23 306 182 52 13 chr5 36112350 36112427 -166973105 - MER116 DNA Mariner 0 80 1 278 151 0 49 chr5 36112833 36112894 -166972638 - MLT1B LTR MaLR -7 460 301 248 254 18 0 chr5 36113445 36113517 -166972015 + MIR SINE MIR 74 147 -61 693 197 22 60 chr5 36115801 36115984 -166969548 + LTR40a LTR ERVL 1 233 -286 198 103 0 0 chr5 36115988 36116017 -166969515 + (TG)n Simple_repeat Simple_repeat 1 29 0 309 262 128 103 chr5 36117229 36117801 -166967731 + HAL1 LINE L1 1291 1876 -631 2007 92 26 4 chr5 36118719 36118992 -166966540 + AluSg SINE Alu 1 279 -31 2627 45 0 3 chr5 36119469 36119779 -166965753 - AluY SINE Alu -2 309 1 512 146 100 77 chr5 36120609 36120739 -166964793 + MER20 DNA MER1_type 1 133 -86 315 150 0 0 chr5 36121367 36121427 -166964105 + (GA)n Simple_repeat Simple_repeat 1 60 0 251 277 79 40 chr5 36121459 36121560 -166963972 - LTR67 LTR ERVL -339 218 114 391 273 25 12 chr5 36123727 36123888 -166961644 + (TA)n Simple_repeat Simple_repeat 2 164 0 357 92 62 46 chr5 36124165 36124230 -166961302 + MADE1 DNA Mariner 13 78 -2 333 326 41 20 chr5 36124540 36124687 -166960845 + L2 LINE L2 2173 2322 -992 2190 107 13 0 chr5 36124818 36125127 -166960405 + AluSp SINE Alu 1 313 0 683 146 73 15 chr5 36125266 36125403 -166960129 + MLT1B LTR MaLR 13 157 -233 7302 28 0 0 chr5 36125408 36126653 -166958879 - L1PA4 LINE L1 0 6155 4913 3952 28 6 2 chr5 36126654 36127148 -166958384 + L1P LINE L1 2706 3201 -2945 1317 160 16 29 chr5 36127148 36127392 -166958140 + MLT1B LTR MaLR 148 388 -2 194 301 0 14 chr5 36127679 36127752 -166957780 + L2 LINE L2 2317 2388 -926 1467 213 50 79 chr5 36127764 36128243 -166957289 - MLT1C LTR MaLR 0 467 3 809 333 93 38 chr5 36128329 36129057 -166956475 - L2 LINE L2 -3 3310 2543 1908 211 36 101 chr5 36129103 36129768 -166955764 + MLT1E2 LTR MaLR 1 622 -4 192 152 0 0 chr5 36130354 36130387 -166955145 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 395 276 29 16 chr5 36130588 36130775 -166954757 - L1MC/D LINE L1 -537 5584 5484 222 160 0 0 chr5 36131482 36131532 -166954000 + A-rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr5 36131632 36131655 -166953877 + AT_rich Low_complexity Low_complexity 1 23 0 51 65 0 0 chr5 36131855 36131948 -166953584 + AT_rich Low_complexity Low_complexity 1 93 0 242 254 45 9 chr5 36132124 36132234 -166953298 + HAL1 LINE L1 2252 2365 -142 1504 163 89 21 chr5 36132320 36132658 -166952874 + MER46B DNA MER2_type 1 236 0 284 169 34 0 chr5 36133160 36133219 -166952313 - Tigger4(Zombi) DNA MER2_type -72 2659 2599 324 324 51 34 chr5 36134215 36134391 -166951141 + L2 LINE L2 3133 3311 -2 26 0 0 0 chr5 36134864 36134890 -166950642 + AT_rich Low_complexity Low_complexity 1 26 0 334 294 163 22 chr5 36135433 36135549 -166949983 + L1ME3A LINE L1 4499 4597 -1549 378 0 0 0 chr5 36135549 36135591 -166949941 + (TG)n Simple_repeat Simple_repeat 1 42 0 334 294 163 22 chr5 36135591 36136107 -166949425 + L1ME3A LINE L1 4597 5220 -926 2301 92 20 0 chr5 36136139 36136431 -166949101 + AluSg SINE Alu 7 304 -6 436 354 56 0 chr5 36136445 36136589 -166948943 - MER91A DNA MER1_type -43 153 2 228 285 39 31 chr5 36136597 36136727 -166948805 + L1ME3A LINE L1 5215 5345 -801 3076 90 16 14 chr5 36136799 36137242 -166948290 + MLT2A1 LTR ERVL 1 444 0 646 290 117 21 chr5 36137268 36137637 -166947895 + L1ME3A LINE L1 5494 5911 -259 1694 168 49 41 chr5 36137637 36137982 -166947550 - MER7A DNA MER2_type 0 346 1 646 290 117 21 chr5 36137982 36138040 -166947492 + L1ME3A LINE L1 5911 5962 -208 1745 227 42 18 chr5 36138339 36138788 -166946744 - MLT1C LTR MaLR 0 467 8 223 313 14 116 chr5 36139758 36139905 -166945627 - MIR3 SINE MIR -3 205 74 22 0 0 0 chr5 36140377 36140399 -166945133 + AT_rich Low_complexity Low_complexity 1 22 0 2526 161 25 2 chr5 36140869 36141316 -166944216 - L1PB4 LINE L1 0 6156 5700 1773 162 13 0 chr5 36141316 36141631 -166943901 + L1PB4 LINE L1 5365 5683 -473 2100 161 14 55 chr5 36141640 36141827 -166943705 + MSTB LTR MaLR 1 194 -232 2145 134 0 6 chr5 36141827 36142141 -166943391 - AluSx SINE Alu 0 312 1 2100 161 14 55 chr5 36142141 36142369 -166943163 + MSTB LTR MaLR 194 399 -27 216 67 0 0 chr5 36142369 36142399 -166943133 + (T)n Simple_repeat Simple_repeat 1 30 0 4744 141 26 5 chr5 36143675 36144491 -166941041 - L1MC2 LINE L1 -3 6341 5509 33 56 0 0 chr5 36144867 36144921 -166940611 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr5 36146745 36146767 -166938765 + AT_rich Low_complexity Low_complexity 1 22 0 268 304 89 25 chr5 36146929 36147087 -166938445 + LTR16A LTR ERVL 276 443 -7 980 358 38 19 chr5 36147120 36147701 -166937831 + HERV16 LTR ERVL 48 639 -4357 403 217 225 14 chr5 36147743 36147881 -166937651 + MER96 DNA MER1_type 5 171 -4 662 311 36 8 chr5 36148458 36148706 -166936826 + HERV16 LTR ERVL 1710 1964 -3032 1393 352 63 18 chr5 36148723 36149993 -166935539 + HERV16 LTR ERVL 2683 3997 -1657 285 286 24 16 chr5 36149993 36150119 -166935413 + HERV16 LTR ERVL 3895 4021 -1743 326 307 66 18 chr5 36150341 36150507 -166935025 + HERV16 LTR ERVL 4150 4323 -1331 707 298 85 34 chr5 36150536 36151045 -166934487 + HERV16 LTR ERVL 4494 4983 -502 385 297 125 0 chr5 36151351 36151479 -166934053 - MER58B DNA MER1_type 0 341 198 307 321 66 58 chr5 36151673 36151810 -166933722 - L2 LINE L2 -3 3269 3132 685 332 70 27 chr5 36152212 36152772 -166932760 - L2 LINE L2 -1001 2313 1730 2151 103 0 35 chr5 36152867 36153178 -166932354 + AluSq SINE Alu 1 300 -13 435 160 21 0 chr5 36153341 36153435 -166932097 - L1MA7 LINE L1 -4 6287 6192 231 319 14 0 chr5 36153631 36153700 -166931832 + L1MCc LINE L1 371 440 -5983 905 275 48 22 chr5 36154174 36154628 -166930904 + L1M4 LINE L1 4225 4690 -1456 1292 204 9 20 chr5 36154786 36155106 -166930426 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr5 36155330 36155354 -166930178 + AT_rich Low_complexity Low_complexity 1 24 0 324 283 62 18 chr5 36156973 36157086 -166928446 - L2 LINE L2 -4 3309 3192 202 320 27 0 chr5 36157822 36157897 -166927635 + L2 LINE L2 3237 3313 0 353 284 47 88 chr5 36158611 36158826 -166926706 + MIR SINE MIR 47 252 -10 288 138 17 0 chr5 36158934 36158992 -166926540 + L1P LINE L1 5338 5396 -769 2192 105 0 0 chr5 36158992 36159278 -166926254 + AluSg SINE Alu 1 286 -24 3656 184 33 9 chr5 36159282 36160042 -166925490 + L1MC2 LINE L1 5559 6336 -8 316 323 86 36 chr5 36160042 36160262 -166925270 - L2 LINE L2 -69 3244 3014 273 310 25 120 chr5 36160418 36160472 -166925060 + L2 LINE L2 2688 2746 -568 784 170 0 25 chr5 36160472 36160631 -166924901 - L1MA10 LINE L1 -3 6331 6177 273 310 25 120 chr5 36160631 36160892 -166924640 + L2 LINE L2 2746 2973 -341 314 250 24 0 chr5 36160982 36161066 -166924466 + L2 LINE L2 2976 3061 -252 207 159 0 164 chr5 36161307 36161515 -166924017 + (TATAG)n Simple_repeat Simple_repeat 5 178 0 220 163 0 147 chr5 36161563 36161753 -166923779 + (TATAA)n Simple_repeat Simple_repeat 5 166 0 * 225 164 0 148 chr5 36161684 36161963 -166923569 + (TATAG)n Simple_repeat Simple_repeat 1 237 0 211 164 0 155 chr5 36162042 36162249 -166923283 + (TATAG)n Simple_repeat Simple_repeat 1 175 0 * 217 153 11 142 chr5 36162101 36162291 -166923241 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 309 284 55 18 chr5 36162366 36162475 -166923057 + L2 LINE L2 3197 3309 -4 607 339 80 42 chr5 36166004 36166757 -166918775 - L2 LINE L2 -269 3044 2220 1628 189 8 23 chr5 36166757 36167089 -166918443 - L1MA6 LINE L1 -221 6082 5753 1162 143 22 9 chr5 36167089 36167306 -166918226 + L1MA6 LINE L1 6074 6300 0 1628 189 8 23 chr5 36167306 36167349 -166918183 - L1MA6 LINE L1 -550 5753 5711 1113 345 171 36 chr5 36167374 36168989 -166916543 - L2 LINE L2 -1149 2165 333 575 335 12 0 chr5 36169035 36169208 -166916324 - MIR SINE MIR -56 206 32 283 287 62 53 chr5 36169540 36169749 -166915783 + MLT1I LTR MaLR 4 214 -195 1427 191 94 4 chr5 36170034 36170311 -166915221 - AluJb SINE Alu -10 302 1 21 0 0 0 chr5 36170624 36170645 -166914887 + AT_rich Low_complexity Low_complexity 1 21 0 300 200 0 0 chr5 36171472 36171547 -166913985 + CT-rich Low_complexity Low_complexity 1 75 0 257 332 137 32 chr5 36172189 36172786 -166912746 + L2 LINE L2 1713 2372 -942 1162 93 0 7 chr5 36172889 36173040 -166912492 - AluSg/x SINE Alu -30 282 133 516 363 117 11 chr5 36173049 36173426 -166912106 + L2 LINE L2 2549 2965 -349 368 346 81 0 chr5 36173505 36173641 -166911891 + L2 LINE L2 3167 3313 0 27 87 0 0 chr5 36173738 36173807 -166911725 + AT_rich Low_complexity Low_complexity 1 69 0 286 233 0 14 chr5 36174174 36174247 -166911285 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 189 255 106 85 chr5 36174431 36174525 -166911007 - L2 LINE L2 -8 3305 3210 827 217 65 28 chr5 36176029 36176246 -166909286 + LTR50 LTR ERVL 1 225 -570 294 234 102 36 chr5 36176247 36176458 -166909074 + LTR50 LTR ERVL 536 792 -3 25 31 0 0 chr5 36176470 36176502 -166909030 + AT_rich Low_complexity Low_complexity 1 32 0 2624 24 0 0 chr5 36176544 36176839 -166908693 + AluY SINE Alu 1 295 -16 360 94 0 0 chr5 36177543 36177596 -166907936 + (A)n Simple_repeat Simple_repeat 1 53 0 630 235 50 40 chr5 36178296 36178496 -166907036 - MER3 DNA MER1_type -7 202 1 2312 66 24 3 chr5 36178592 36178881 -166906651 + AluY SINE Alu 1 295 -16 415 283 58 0 chr5 36180879 36180999 -166904533 - MER94 DNA DNA -5 129 3 1190 107 12 0 chr5 36181314 36181482 -166904050 + AluSp SINE Alu 133 302 -11 419 309 40 8 chr5 36182251 36182377 -166903155 + MIR SINE MIR 15 144 -118 309 26 0 0 chr5 36183625 36183663 -166901869 + (TG)n Simple_repeat Simple_repeat 1 38 0 187 203 27 14 chr5 36183895 36183969 -166901563 + A-rich Low_complexity Low_complexity 2 76 0 214 164 16 16 chr5 36184057 36184118 -166901414 + GA-rich Low_complexity Low_complexity 3 63 0 2333 107 7 0 chr5 36187283 36187593 -166897939 - AluSq SINE Alu -1 312 1 426 78 0 0 chr5 36190357 36190421 -166895111 + Alu SINE Alu 244 307 -4 2290 82 10 3 chr5 36190432 36190724 -166894808 + AluSp SINE Alu 1 294 -19 2446 124 5 19 chr5 36191569 36191947 -166893585 - THE1C LTR MaLR 0 375 3 356 238 8 0 chr5 36192232 36192358 -166893174 + (TA)n Simple_repeat Simple_repeat 2 128 0 27 29 0 0 chr5 36192478 36192512 -166893020 + AT_rich Low_complexity Low_complexity 1 34 0 777 159 13 70 chr5 36192979 36193007 -166892525 + FAM SINE Alu 26 54 -267 2500 134 0 3 chr5 36193007 36193372 -166892160 - THE1B LTR MaLR 0 364 1 777 159 13 70 chr5 36193372 36193500 -166892032 + FAM SINE Alu 54 173 -12 335 298 12 0 chr5 36194560 36194644 -166890888 - L2 LINE L2 -4 3268 3184 474 232 45 18 chr5 36194870 36194982 -166890550 + L1MDa LINE L1 11 125 -6415 279 146 0 0 chr5 36194996 36195044 -166890488 - L1MDa LINE L1 -6452 88 41 1216 231 58 36 chr5 36195068 36195270 -166890262 + L1MDa LINE L1 115 330 -6210 2444 120 19 6 chr5 36195270 36195629 -166889903 + THE1B LTR MaLR 1 364 0 1216 231 58 36 chr5 36195629 36195786 -166889746 + L1MDa LINE L1 330 482 -6058 812 294 23 3 chr5 36196646 36196996 -166888536 + L1M4 LINE L1 4786 5142 -1004 440 248 86 17 chr5 36197180 36197482 -166888050 + L1MDa LINE L1 1140 1462 -5259 2749 170 37 12 chr5 36197584 36198155 -166887377 + L1MC2 LINE L1 5760 6344 0 545 141 196 117 chr5 36199151 36199314 -166886218 + MER44D DNA MER2_type 2 447 -162 2186 149 22 3 chr5 36199314 36199682 -166885850 + THE1C LTR MaLR 1 375 0 7990 136 40 0 chr5 36199682 36200901 -166884631 + THE1C-int LTR MaLR 1 1268 -312 3239 96 0 13 chr5 36201019 36201476 -166884056 + L1PA8A LINE L1 5669 6119 -12 353 238 0 0 chr5 36201515 36201595 -166883937 - L1M4 LINE L1 -1983 4163 4084 255 263 9 35 chr5 36201589 36201703 -166883829 - L1MEc LINE L1 -4665 2457 2347 * 1124 281 36 60 chr5 36202247 36202527 -166883005 - L1MEc LINE L1 -5841 582 320 1004 237 68 78 chr5 36202527 36202999 -166882533 + MLT1C LTR MaLR 1 467 0 1124 281 36 60 chr5 36202999 36203252 -166882280 - L1MEc LINE L1 -6103 320 62 21 0 0 0 chr5 36204299 36204320 -166881212 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr5 36205144 36205173 -166880359 + AT_rich Low_complexity Low_complexity 1 29 0 344 184 28 9 chr5 36206192 36206301 -166879231 + (TA)n Simple_repeat Simple_repeat 1 111 0 1131 294 10 35 chr5 36207403 36207804 -166877728 + LTR16A LTR ERVL 27 417 -33 944 343 70 18 chr5 36208224 36208781 -166876751 + HERV16 LTR ERVL 809 1394 -3602 1414 300 46 18 chr5 36208785 36209282 -166876250 + HERV16 LTR ERVL 1682 2192 -2804 230 285 29 80 chr5 36209778 36209915 -166875617 + MLT1K LTR MaLR 422 551 -37 207 0 0 0 chr5 36210358 36210381 -166875151 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 809 175 23 41 chr5 36211020 36211191 -166874341 + MER58A DNA MER1_type 26 193 -31 2433 63 7 0 chr5 36211191 36211491 -166874041 + AluY SINE Alu 1 302 -9 663 279 44 63 chr5 36212350 36212665 -166872867 - L2 LINE L2 0 3313 3005 270 254 45 0 chr5 36214082 36214149 -166871383 - L2 LINE L2 0 3313 3244 21 36 0 0 chr5 36214211 36214239 -166871293 + AT_rich Low_complexity Low_complexity 1 28 0 1452 224 37 8 chr5 36214885 36215375 -166870157 - L1M4c LINE L1 -2922 3722 3219 3484 136 9 2 chr5 36215391 36215949 -166869583 - L1PA10 LINE L1 -11 6157 5596 1742 189 6 9 chr5 36215950 36216267 -166869265 - L1P3 LINE L1 -5557 318 3 1735 149 45 36 chr5 36216450 36216758 -166868774 + AluSx SINE Alu 1 311 -1 1646 230 26 33 chr5 36216760 36216773 -166868759 - L1M4c LINE L1 -3454 3190 3178 2516 111 8 0 chr5 36216773 36217125 -166868407 - THE1A LTR MaLR 0 355 1 1646 230 26 33 chr5 36217125 36217585 -166867947 - L1M4c LINE L1 -3466 3178 2719 2131 128 3 0 chr5 36217585 36217882 -166867650 - AluSx SINE Alu -14 298 1 1646 230 26 33 chr5 36217882 36217981 -166867551 - L1M4c LINE L1 -3925 2719 2621 2150 150 8 33 chr5 36217983 36218350 -166867182 - THE1B LTR MaLR 0 364 7 9313 146 41 5 chr5 36218355 36219879 -166865653 - THE1B-int LTR MaLR 0 1580 1 2365 139 14 0 chr5 36219879 36220238 -166865294 - THE1B LTR MaLR 0 364 1 3709 262 64 43 chr5 36220252 36222552 -166862980 - L1M4c LINE L1 -4176 2649 152 472 162 34 51 chr5 36222579 36222633 -166862899 + L1PA16 LINE L1 6040 6093 -73 2277 115 47 16 chr5 36222633 36222997 -166862535 + THE1C LTR MaLR 1 375 0 472 162 34 51 chr5 36222997 36223059 -166862473 + L1PA16 LINE L1 6093 6154 -12 580 161 45 0 chr5 36223063 36223175 -166862357 + L1PA16 LINE L1 17 133 -7432 * 7583 159 38 0 chr5 36223172 36224398 -166861134 + L1PA16 LINE L1 1099 2371 -5194 4615 139 17 4 chr5 36224392 36225152 -166860380 + L1PA16 LINE L1 6681 7450 -135 * 1004 189 26 0 chr5 36225152 36225342 -166860190 + L1PA16 LINE L1 5971 6165 -1 416 170 0 85 chr5 36225350 36225444 -166860088 + LTR29 LTR ERV1 465 550 -72 1641 102 23 8 chr5 36225869 36226133 -166859399 - L1PA8A LINE L1 -513 5618 5351 2057 263 42 40 chr5 36226191 36226703 -166858829 + L1MC/D LINE L1 4264 4774 -1576 2787 3 0 3 chr5 36226703 36227006 -166858526 + AluYa5 SINE Alu 1 302 -9 2057 263 42 40 chr5 36227006 36227822 -166857710 + L1MC/D LINE L1 4774 5607 -743 23 0 0 0 chr5 36227829 36227852 -166857680 + AT_rich Low_complexity Low_complexity 1 23 0 7818 200 67 48 chr5 36227852 36231422 -166854110 - L1MA7 LINE L1 -2 6493 2229 2380 83 0 3 chr5 36231422 36231723 -166853809 - AluSq SINE Alu -13 300 1 7818 200 67 48 chr5 36231723 36231948 -166853584 - L1MA7 LINE L1 -4266 2229 2010 2131 189 44 7 chr5 36232051 36232459 -166853073 - MSTB1 LTR MaLR 0 432 10 2249 280 33 54 chr5 36232492 36233939 -166851593 - L1MA7 LINE L1 -4246 2105 819 486 298 35 6 chr5 36234132 36234303 -166851229 - L1MA7 LINE L1 -6105 176 1 1648 104 4 24 chr5 36235090 36235339 -166850193 - L1PA11 LINE L1 0 6174 5931 2161 113 3 0 chr5 36235640 36235931 -166849601 - AluSg SINE Alu -18 292 1 7492 197 10 19 chr5 36238675 36240290 -166845242 + MST-int LTR MaLR 1 1605 -46 474 140 43 11 chr5 36240291 36240384 -166845148 + MER4A LTR ERV1 3 98 -566 1620 146 165 76 chr5 36240385 36240755 -166844777 + MER4A LTR ERV1 262 664 0 5286 137 74 55 chr5 36240758 36241417 -166844115 + MER4A-int LTR ERV1 1 646 -4369 180 0 0 0 chr5 36241417 36241437 -166844095 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 417 20 0 0 chr5 36241436 36241486 -166844046 + (CA)n Simple_repeat Simple_repeat 1 50 0 5286 137 74 55 chr5 36241437 36243193 -166842339 + MER4A-int LTR ERV1 646 1362 -3653 1034 183 152 5 chr5 36243193 36243417 -166842115 - LTR8 LTR ERV1 -434 257 1 296 121 138 0 chr5 36243421 36243479 -166842053 + LTR19-int LTR ERV1 3508 3573 -2013 1201 161 68 21 chr5 36243485 36243728 -166841804 + MSTB1 LTR MaLR 174 372 -3 189 195 0 0 chr5 36243950 36243991 -166841541 + (CATA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr5 36244339 36244360 -166841172 + AT_rich Low_complexity Low_complexity 1 21 0 197 223 0 0 chr5 36245126 36245179 -166840353 + MIR SINE MIR 99 151 -57 6554 64 10 0 chr5 36245326 36245672 -166839860 - L1PA7 LINE L1 0 6154 5813 2925 13 0 0 chr5 36245672 36245990 -166839542 - AluYb8 SINE Alu 0 318 1 6554 64 10 0 chr5 36245990 36247239 -166838293 - L1PA7 LINE L1 -341 5813 4581 234 0 0 0 chr5 36247408 36247434 -166838098 + (CA)n Simple_repeat Simple_repeat 2 27 0 215 167 0 24 chr5 36247435 36247477 -166838055 + (TATG)n Simple_repeat Simple_repeat 2 42 0 24445 136 19 34 chr5 36247771 36248935 -166836597 + L1PA8A LINE L1 26 1207 -5239 198 0 0 0 chr5 36248935 36248957 -166836575 + (CAA)n Simple_repeat Simple_repeat 3 24 0 24445 136 19 34 chr5 36248957 36254237 -166831295 + L1PA8A LINE L1 1207 6417 -29 212 21 21 62 chr5 36255810 36255858 -166829674 + (TA)n Simple_repeat Simple_repeat 2 47 0 11537 131 23 28 chr5 36255958 36257122 -166828410 - Tigger1 DNA MER2_type 0 2418 1267 2361 88 0 3 chr5 36257122 36257428 -166828104 + AluY SINE Alu 3 307 -4 11537 131 23 28 chr5 36257428 36258202 -166827330 - Tigger1 DNA MER2_type -1151 1267 490 439 233 117 44 chr5 36258516 36258722 -166826810 - LTR52 LTR ERVL -200 221 1 394 348 18 71 chr5 36259120 36259307 -166826225 + L2 LINE L2 2866 3024 -289 1623 164 7 11 chr5 36259307 36259606 -166825926 + AluJb SINE Alu 9 306 0 394 348 18 71 chr5 36259606 36259811 -166825721 + L2 LINE L2 3024 3238 -75 527 315 105 5 chr5 36260150 36260369 -166825163 + MIR SINE MIR 11 251 -11 21 0 0 0 chr5 36260593 36260614 -166824918 + AT_rich Low_complexity Low_complexity 1 21 0 2508 67 0 3 chr5 36260982 36261294 -166824238 - AluY SINE Alu 0 311 1 22 35 0 0 chr5 36261741 36261770 -166823762 + AT_rich Low_complexity Low_complexity 1 29 0 442 304 88 5 chr5 36263044 36263261 -166822271 - LTR16C LTR ERVL 0 491 257 301 140 193 0 chr5 36263566 36263623 -166821909 + Tigger2 DNA MER2_type 1 68 -2650 * 1933 128 15 181 chr5 36263608 36264140 -166821392 + Tigger2 DNA MER2_type 2267 2710 -8 204 407 57 14 chr5 36264251 36264391 -166821141 + L2 LINE L2 3122 3267 -5 53 69 0 0 chr5 36265336 36265438 -166820094 + AT_rich Low_complexity Low_complexity 1 102 0 249 235 59 0 chr5 36265954 36266039 -166819493 + L1M4 LINE L1 4500 4589 -1557 21 0 0 0 chr5 36266204 36266225 -166819307 + AT_rich Low_complexity Low_complexity 1 21 0 2485 122 6 0 chr5 36266247 36266607 -166818925 - THE1B LTR MaLR -2 362 1 8118 126 51 35 chr5 36266607 36267929 -166817603 - THE1B-int LTR MaLR 0 1580 238 207 316 38 0 chr5 36268158 36268237 -166817295 + L2 LINE L2 3229 3310 -3 21 0 0 0 chr5 36268755 36268776 -166816756 + AT_rich Low_complexity Low_complexity 1 21 0 29 94 0 0 chr5 36269782 36269867 -166815665 + AT_rich Low_complexity Low_complexity 1 85 0 348 248 62 31 chr5 36270221 36270350 -166815182 + MIR3 SINE MIR 44 176 -32 320 305 76 23 chr5 36270834 36270965 -166814567 + L2 LINE L2 3176 3313 0 24 32 0 0 chr5 36271128 36271159 -166814373 + AT_rich Low_complexity Low_complexity 1 31 0 797 286 87 4 chr5 36271159 36271390 -166814142 - MIR SINE MIR -5 257 8 203 317 66 44 chr5 36272107 36272290 -166813242 - L2 LINE L2 -812 2502 2316 337 245 0 20 chr5 36272414 36272512 -166813020 - Charlie1 DNA MER1_type -10 2751 2656 1661 213 57 40 chr5 36272613 36273107 -166812425 - Charlie1 DNA MER1_type -518 2243 1742 2163 139 25 3 chr5 36274063 36274416 -166811116 - THE1C LTR MaLR 0 375 15 270 316 51 0 chr5 36274721 36274819 -166810713 + Tigger8 DNA MER2_type 2 104 -562 28 48 0 0 chr5 36275080 36275122 -166810410 + AT_rich Low_complexity Low_complexity 1 42 0 376 341 73 6 chr5 36275136 36275491 -166810041 + Tigger8 DNA MER2_type 284 662 -4 1531 185 3 31 chr5 36275610 36275896 -166809636 - AluJo SINE Alu -14 298 21 240 280 13 13 chr5 36276203 36276278 -166809254 + MIR SINE MIR 88 162 -100 228 235 37 0 chr5 36276568 36276649 -166808883 - HAL1 LINE L1 -173 2334 2251 297 0 0 0 chr5 36277377 36277410 -166808122 + (CA)n Simple_repeat Simple_repeat 1 33 0 209 349 40 33 chr5 36277605 36277757 -166807775 - MIR3 SINE MIR -25 183 31 469 315 108 12 chr5 36278193 36278444 -166807088 + LTR16A LTR ERVL 165 439 -11 259 344 81 19 chr5 36278532 36278692 -166806840 + HERV16 LTR ERVL 79 248 -4748 1579 235 147 5 chr5 36278859 36279288 -166806244 + MLT1E2 LTR MaLR 137 626 0 2253 89 4 0 chr5 36279480 36279761 -166805771 + AluSp SINE Alu 2 283 -30 2933 189 33 71 chr5 36281459 36282180 -166803352 - LTR8A LTR ERV1 0 727 34 851 219 31 44 chr5 36282327 36282555 -166802977 + MLT1E1 LTR MaLR 1 225 -429 1115 248 16 0 chr5 36282609 36282855 -166802677 + MLT1E1 LTR MaLR 405 654 0 5506 149 29 22 chr5 36283707 36284954 -166800578 - L1MA7 LINE L1 -2 6289 5024 2018 76 0 0 chr5 36285055 36285305 -166800227 + AluY SINE Alu 39 288 -23 215 298 0 0 chr5 36285308 36285365 -166800167 + GA-rich Low_complexity Low_complexity 4 60 0 362 352 116 24 chr5 36286146 36286527 -166799005 + L2 LINE L2 2475 2890 -424 354 217 0 0 chr5 36286716 36286836 -166798696 + A-rich Low_complexity Low_complexity 1 120 0 388 356 0 0 chr5 36286956 36287116 -166798416 + A-rich Low_complexity Low_complexity 4 163 0 558 232 0 0 chr5 36287136 36287300 -166798232 + A-rich Low_complexity Low_complexity 1 164 0 232 198 40 20 chr5 36287340 36287441 -166798091 + GA-rich Low_complexity Low_complexity 1 103 0 1303 268 125 16 chr5 36337531 36338591 -166746941 - L1MEc LINE L1 -3213 3728 2593 1129 88 16 6 chr5 36338708 36338890 -166746642 - MER4A-int LTR ERV1 -4477 2121 1938 5252 123 58 45 chr5 36338892 36340071 -166745461 - MER4A-int LTR ERV1 -3653 1362 668 345 24 0 0 chr5 36340071 36340113 -166745419 + (TG)n Simple_repeat Simple_repeat 1 42 0 5252 123 58 45 chr5 36340113 36340790 -166744742 - MER4A-int LTR ERV1 -4347 668 1 1620 146 165 76 chr5 36340793 36341163 -166744369 - MER4A LTR ERV1 0 664 262 474 140 43 11 chr5 36341164 36341257 -166744275 - MER4A LTR ERV1 -566 98 3 7575 224 11 40 chr5 36341258 36342912 -166742620 - MST-int LTR MaLR -46 1605 1 261 364 24 34 chr5 36344092 36344298 -166741234 - ERVL LTR ERVL -670 5094 4891 377 300 18 0 chr5 36344831 36344941 -166740591 + MLT1C LTR MaLR 356 467 0 905 227 74 8 chr5 36344941 36345183 -166740349 - L1MEc LINE L1 -6104 319 62 21 0 0 0 chr5 36346230 36346251 -166739281 + AT_rich Low_complexity Low_complexity 1 21 0 339 263 0 35 chr5 36348102 36348216 -166737316 + L1MC4 LINE L1 6592 6701 -1341 406 196 54 22 chr5 36348991 36349083 -166736449 + L1MDa LINE L1 31 125 -6415 279 146 0 0 chr5 36349097 36349145 -166736387 - L1MDa LINE L1 -6452 88 41 1240 225 61 39 chr5 36349169 36349371 -166736161 + L1MDa LINE L1 115 330 -6210 2444 120 19 6 chr5 36349371 36349730 -166735802 + THE1B LTR MaLR 1 364 0 1240 225 61 39 chr5 36349730 36349887 -166735645 + L1MDa LINE L1 330 482 -6058 836 291 23 3 chr5 36350731 36351081 -166734451 + L1M4 LINE L1 4786 5142 -1004 440 248 86 17 chr5 36351264 36351566 -166733966 + L1MDa LINE L1 1140 1462 -5259 2771 168 34 12 chr5 36351668 36352233 -166733299 + L1MC2 LINE L1 5760 6336 -8 545 141 196 117 chr5 36353224 36353387 -166732145 + MER44D DNA MER2_type 2 447 -162 2186 149 22 3 chr5 36353387 36353755 -166731777 + THE1C LTR MaLR 1 375 0 9258 150 33 38 chr5 36353755 36355342 -166730190 + THE1C-int LTR MaLR 1 1580 0 617 138 0 0 chr5 36355342 36355436 -166730096 + THE1C LTR MaLR 1 94 -270 2185 141 5 30 chr5 36355436 36355741 -166729791 - L1P4 LINE L1 -468 5697 5403 2267 87 0 13 chr5 36355741 36356039 -166729493 - AluY SINE Alu -17 294 1 2185 141 5 30 chr5 36356039 36356129 -166729403 - L1P4 LINE L1 -762 5403 5312 229 204 11 45 chr5 36356356 36356444 -166729088 + GA-rich Low_complexity Low_complexity 2 86 0 2635 44 0 0 chr5 36356639 36356980 -166728552 - L1P LINE L1 -788 5358 5018 2711 45 0 0 chr5 36356980 36357298 -166728234 + L1PA4 LINE L1 5822 6152 -3 462 306 48 11 chr5 36357409 36357595 -166727937 + L2 LINE L2 2232 2424 -890 586 155 0 0 chr5 36358270 36358373 -166727159 + L1MA1 LINE L1 6200 6302 0 4815 184 97 75 chr5 36358457 36359031 -166726501 - L1MC3 LINE L1 -20 7765 7205 271 244 39 13 chr5 36359031 36359109 -166726423 - MLT1F1 LTR MaLR -453 114 35 4815 184 97 75 chr5 36359109 36359823 -166725709 - L1MC3 LINE L1 -580 7205 6371 366 243 72 45 chr5 36362005 36362092 -166723440 - L2 LINE L2 -6 3307 3215 2364 151 33 14 chr5 36362092 36362516 -166723016 - MSTB1 LTR MaLR 0 432 1 366 243 72 45 chr5 36362516 36362539 -166722993 - L2 LINE L2 -98 3215 3194 1871 120 0 4 chr5 36362974 36363233 -166722299 - AluSg SINE Alu -14 296 39 23 0 0 0 chr5 36363448 36363471 -166722061 + AT_rich Low_complexity Low_complexity 1 23 0 4669 128 30 26 chr5 36365721 36366497 -166719035 - MER4E LTR ERV1 0 779 1 224 342 92 8 chr5 36366763 36366883 -166718649 - MIR SINE MIR -16 246 117 316 342 41 50 chr5 36367057 36367376 -166718156 - L2 LINE L2 -75 3238 2923 328 279 47 58 chr5 36367447 36367656 -166717876 - L1MC3 LINE L1 -2266 5542 5335 1947 140 40 32 chr5 36367656 36368028 -166717504 - THE1C LTR MaLR 0 375 1 328 279 47 58 chr5 36368028 36368076 -166717456 - L1MC3 LINE L1 -2473 5335 5288 362 181 0 48 chr5 36368081 36368164 -166717368 + MADE1 DNA Mariner 2 80 0 24 32 0 0 chr5 36368238 36368269 -166717263 + AT_rich Low_complexity Low_complexity 1 31 0 2577 162 16 4 chr5 36368277 36368765 -166716767 - L1MA4 LINE L1 -5 6295 5802 27 49 0 0 chr5 36370041 36370082 -166715450 + AT_rich Low_complexity Low_complexity 1 41 0 403 289 152 34 chr5 36370320 36370708 -166714824 - HAL1b LINE L1 -844 504 71 1018 210 12 51 chr5 36372091 36372348 -166713184 - MLT1A2 LTR MaLR -127 247 1 367 271 47 47 chr5 36373776 36373905 -166711627 - MIR3 SINE MIR -32 176 48 402 21 0 0 chr5 36373960 36374007 -166711525 + (TG)n Simple_repeat Simple_repeat 2 48 0 1953 132 38 0 chr5 36374351 36374669 -166710863 + MSTA LTR MaLR 1 330 -98 604 282 24 0 chr5 36374876 36375046 -166710486 + MER97c DNA MER1_type? 4 177 -913 259 294 17 34 chr5 36375185 36375304 -166710228 - HAL1b LINE L1 -748 600 484 2033 165 78 47 chr5 36375446 36375919 -166709613 - L1MC2 LINE L1 -18 6326 5839 1503 244 52 21 chr5 36375922 36376344 -166709188 + LTR47B LTR ERVL 1 435 -8 667 208 13 0 chr5 36376352 36376501 -166709031 - L1MC2 LINE L1 -494 5839 5689 5145 17 2 0 chr5 36376601 36377196 -166708336 - L1P LINE L1 -1487 4659 4064 4911 55 0 0 chr5 36377191 36377808 -166707724 + L1P LINE L1 1642 2258 -3888 * 1710 159 9 55 chr5 36379782 36380109 -166705423 + AluSx SINE Alu 1 312 0 1903 89 0 4 chr5 36381599 36381845 -166703687 - AluSc SINE Alu -20 289 45 230 366 21 0 chr5 36382015 36382108 -166703424 + MLT1H LTR MaLR 118 212 -337 393 294 116 1 chr5 36383208 36383373 -166702159 - MIR3 SINE MIR -9 199 12 2031 112 10 13 chr5 36383494 36383806 -166701726 + THE1A LTR MaLR 1 311 -44 639 245 14 7 chr5 36383911 36384054 -166701478 - MER45A DNA AcHobo -34 144 1 533 352 22 9 chr5 36384252 36384479 -166701053 - MIR SINE MIR -31 231 2 1608 224 34 25 chr5 36385416 36385775 -166699757 - MLT1A1 LTR MaLR 0 396 2 1709 218 5 14 chr5 36386421 36386788 -166698744 - MLT1A1 LTR MaLR 0 365 2 391 323 86 21 chr5 36387672 36387963 -166697569 - L3 LINE CR1 -120 1457 1148 1658 156 0 0 chr5 36387964 36388214 -166697318 - HERVL LTR ERVL -1536 4118 3869 4356 142 12 9 chr5 36388237 36388918 -166696614 - HERVL LTR ERVL -1755 3899 3217 * 6222 114 2 28 chr5 36388915 36389833 -166695699 + HERVL LTR ERVL 4504 5397 -257 1476 134 0 0 chr5 36389972 36390181 -166695351 - AluSg/x SINE Alu -11 299 91 244 293 160 55 chr5 36390263 36390663 -166694869 - L3 LINE CR1 -696 881 440 233 95 0 24 chr5 36391212 36391254 -166694278 + (TC)n Simple_repeat Simple_repeat 2 42 0 24 0 0 0 chr5 36391312 36391336 -166694196 + AT_rich Low_complexity Low_complexity 1 24 0 1507 207 110 78 chr5 36391477 36392014 -166693518 + MLT2B3 LTR ERVL 1 554 0 301 243 6 136 chr5 36392172 36392239 -166693293 - MLT1F LTR MaLR -8 534 501 1731 218 51 32 chr5 36392239 36392731 -166692801 - MLT1D LTR MaLR 0 505 5 301 243 6 136 chr5 36392731 36392832 -166692700 - MLT1F LTR MaLR -41 501 388 242 275 77 92 chr5 36392847 36393054 -166692478 - MLT1F LTR MaLR -200 390 187 259 344 81 19 chr5 36393334 36393494 -166692038 + HERV16-B3 LTR ERVL 79 248 -4748 1579 235 147 5 chr5 36393661 36394090 -166691442 + MLT1E2 LTR MaLR 137 626 0 2253 89 4 0 chr5 36394282 36394563 -166690969 + AluSp SINE Alu 2 283 -30 3040 186 36 63 chr5 36396262 36396975 -166688557 - LTR8A LTR ERV1 0 727 34 840 214 31 48 chr5 36397122 36397351 -166688181 + MLT1E1 LTR MaLR 1 225 -429 1115 248 16 0 chr5 36397405 36397651 -166687881 + MLT1E1 LTR MaLR 405 654 0 230 285 29 80 chr5 36398433 36398570 -166686962 + MLT1K LTR MaLR 422 551 -37 207 0 0 0 chr5 36399013 36399036 -166686496 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 809 175 23 41 chr5 36399675 36399846 -166685686 + MER58A DNA MER1_type 26 193 -31 2433 63 7 0 chr5 36399846 36400146 -166685386 + AluY SINE Alu 1 302 -9 25 65 0 0 chr5 36400818 36400864 -166684668 + AT_rich Low_complexity Low_complexity 1 46 0 309 371 81 9 chr5 36401207 36401417 -166684115 - MIR SINE MIR -26 236 12 2625 135 16 0 chr5 36403569 36403998 -166681534 + L1PB1 LINE L1 5712 6147 -4 442 160 0 85 chr5 36404157 36404251 -166681281 - LTR29 LTR ERV1 -72 550 465 1004 189 26 0 chr5 36404259 36404449 -166681083 - L1PA16 LINE L1 -1 6165 5971 4615 139 17 4 chr5 36404449 36405209 -166680323 - L1PA16 LINE L1 -135 7450 6681 * 7569 160 38 0 chr5 36405203 36406429 -166679103 - L1PA16 LINE L1 -5194 2371 1099 580 161 45 0 chr5 36406426 36406538 -166678994 - L1PA16 LINE L1 -7432 133 17 * 496 154 34 51 chr5 36406542 36406604 -166678928 - L1PA16 LINE L1 -12 6154 6093 2276 115 47 16 chr5 36406604 36406968 -166678564 - THE1C LTR MaLR 0 375 1 496 154 34 51 chr5 36406968 36407022 -166678510 - L1PA16 LINE L1 -73 6093 6040 4129 259 75 37 chr5 36407049 36409323 -166676209 + L1M4 LINE L1 152 2649 -4176 2365 139 14 0 chr5 36409337 36409696 -166675836 + THE1B LTR MaLR 1 364 0 9432 143 41 5 chr5 36409696 36411221 -166674311 + THE1B-int LTR MaLR 1 1580 0 2150 150 8 33 chr5 36411226 36411593 -166673939 + THE1B LTR MaLR 7 364 0 360 206 0 0 chr5 36411595 36411686 -166673846 + L1M4 LINE L1 2621 2711 -3933 484 145 0 0 chr5 36411696 36411765 -166673767 + AluS SINE Alu 1 69 -243 369 208 14 69 chr5 36411866 36411996 -166673536 + L1M4 LINE L1 3055 3178 -3466 2503 114 8 0 chr5 36411996 36412348 -166673184 + THE1A LTR MaLR 1 355 0 369 208 14 69 chr5 36412348 36412361 -166673171 + L1M4 LINE L1 3178 3190 -3454 1735 149 45 36 chr5 36412363 36412671 -166672861 - AluSx SINE Alu -1 311 1 1724 196 6 9 chr5 36412854 36413171 -166672361 + L1P3 LINE L1 3 318 -5557 3487 136 9 2 chr5 36413172 36413730 -166671802 + L1PA10 LINE L1 5596 6157 -11 1435 226 37 8 chr5 36413746 36414236 -166671296 + L1M4 LINE L1 3219 3722 -2922 21 36 0 0 chr5 36414882 36414910 -166670622 + AT_rich Low_complexity Low_complexity 1 28 0 270 254 45 0 chr5 36414972 36415039 -166670493 + L2 LINE L2 3244 3313 0 279 308 39 50 chr5 36416456 36416638 -166668894 + L2 LINE L2 3005 3184 -129 2471 234 24 28 chr5 36416750 36416993 -166668539 - L1MC/D LINE L1 -748 5398 5156 1762 123 69 4 chr5 36416993 36417269 -166668263 - AluSc SINE Alu -15 294 1 2471 234 24 28 chr5 36417269 36417945 -166667587 - L1MC/D LINE L1 -990 5156 4659 2049 142 0 0 chr5 36417945 36418240 -166667292 - AluSx SINE Alu -12 300 6 2471 234 24 28 chr5 36418240 36418422 -166667110 - L1MC/D LINE L1 -1487 4659 4478 21 36 0 0 chr5 36418594 36418622 -166666910 + AT_rich Low_complexity Low_complexity 1 28 0 1614 169 40 7 chr5 36418672 36418992 -166666540 - AluSx SINE Alu 0 329 1 784 337 68 42 chr5 36420107 36420878 -166664654 - L2 LINE L2 0 3313 2516 2041 158 42 14 chr5 36420897 36421251 -166664281 + THE1B LTR MaLR 1 364 0 10699 124 11 3 chr5 36421252 36422804 -166662728 + THE1B-int LTR MaLR 2 1566 -14 2258 120 46 6 chr5 36422811 36423161 -166662371 + THE1B LTR MaLR 1 364 0 1038 102 11 17 chr5 36423645 36423690 -166661842 + (TTTC)n Simple_repeat Simple_repeat 1 220 0 1038 102 11 17 chr5 36423690 36423867 -166661665 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 544 62 74 0 chr5 36428357 36428438 -166657094 + PABL_A-int LTR ERV1 1563 1649 -3366 1128 179 127 4 chr5 36428439 36428668 -166656864 - LTR8 LTR ERV1 -434 257 1 296 121 138 0 chr5 36428672 36428730 -166656802 + LTR19-int LTR ERV1 3508 3573 -2013 1201 161 68 21 chr5 36428736 36428979 -166656553 + MSTB1 LTR MaLR 174 372 -3 189 195 0 0 chr5 36429201 36429242 -166656290 + (CATA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr5 36429590 36429611 -166655921 + AT_rich Low_complexity Low_complexity 1 21 0 197 223 0 0 chr5 36430377 36430430 -166655102 + MIR SINE MIR 99 151 -57 6556 66 9 0 chr5 36430577 36430918 -166654614 - L1PA7 LINE L1 0 6154 5818 2911 16 0 0 chr5 36430918 36431236 -166654296 - AluYb8 SINE Alu 0 318 1 6556 66 9 0 chr5 36431236 36432526 -166653006 - L1PA7 LINE L1 -336 5818 4540 22 35 0 0 chr5 36432771 36432800 -166652732 + AT_rich Low_complexity Low_complexity 1 29 0 2333 107 7 0 chr5 36433334 36433644 -166651888 - AluSq SINE Alu -1 312 1 439 73 0 0 chr5 36436408 36436476 -166649056 + Alu SINE Alu 244 311 0 2293 79 10 3 chr5 36436488 36436780 -166648752 + AluSp SINE Alu 1 294 -19 226 276 79 0 chr5 36437418 36437494 -166648038 + MIR SINE MIR 170 251 -11 186 43 0 0 chr5 36438374 36438397 -166647135 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 2491 119 5 19 chr5 36440816 36441194 -166644338 - THE1C LTR MaLR 0 375 3 377 230 8 0 chr5 36441479 36441605 -166643927 + (TA)n Simple_repeat Simple_repeat 2 128 0 27 29 0 0 chr5 36441725 36441759 -166643773 + AT_rich Low_complexity Low_complexity 1 34 0 793 157 13 69 chr5 36442226 36442254 -166643278 + FAM SINE Alu 26 54 -267 2477 137 0 3 chr5 36442254 36442619 -166642913 - THE1B LTR MaLR 0 364 1 793 157 13 69 chr5 36442619 36442749 -166642783 + FAM SINE Alu 54 175 -10 2175 110 3 0 chr5 36444590 36444881 -166640651 + AluSg SINE Alu 1 292 -18 1642 104 4 24 chr5 36445182 36445431 -166640101 + L1PA11 LINE L1 5931 6174 0 486 298 35 6 chr5 36446219 36446390 -166639142 + L1MA7 LINE L1 1216 1391 -6105 2249 280 29 46 chr5 36446583 36448030 -166637502 + L1MA7 LINE L1 2034 3320 -4246 2131 189 44 7 chr5 36448063 36448471 -166637061 + MSTB1 LTR MaLR 10 432 0 6139 232 64 28 chr5 36448574 36448799 -166636733 + L1MA7 LINE L1 3225 3440 -4125 2354 86 0 3 chr5 36448799 36449100 -166636432 + AluSq SINE Alu 1 300 -13 6139 232 64 28 chr5 36449100 36451633 -166633899 + L1MA7 LINE L1 3440 6130 -1435 4489 174 31 29 chr5 36451636 36452611 -166632921 + L1MA7 LINE L1 6732 7708 -2 23 0 0 0 chr5 36452611 36452634 -166632898 + AT_rich Low_complexity Low_complexity 1 23 0 2040 264 42 40 chr5 36452641 36453457 -166632075 - L1MC/D LINE L1 -743 6198 5569 2805 3 0 3 chr5 36453457 36453762 -166631770 - AluYa5 SINE Alu -7 304 1 2040 264 42 40 chr5 36453762 36454274 -166631258 - L1MC/D LINE L1 -1372 5569 5059 5614 91 3 8 chr5 36454332 36455105 -166630427 + L1PA8A LINE L1 5351 6119 -12 353 238 0 0 chr5 36455144 36455224 -166630308 - L1MC/D LINE L1 -1983 4958 4879 329 251 111 67 chr5 36455220 36455476 -166630056 - L1MDa LINE L1 -4532 2409 2086 * 498 266 14 14 chr5 36455502 36455641 -166629891 - L1MDa LINE L1 -5186 1237 1099 499 349 18 40 chr5 36455744 36456016 -166629516 - L1MDa LINE L1 -5841 582 317 527 275 93 66 chr5 36456024 36456388 -166629144 + MLT1D LTR MaLR 1 374 -131 380 294 33 0 chr5 36456629 36456721 -166628811 + HERV16 LTR ERVL 6 100 -4896 936 344 72 18 chr5 36457024 36457580 -166627952 + HERV16 LTR ERVL 809 1394 -3602 1408 303 54 25 chr5 36457584 36458154 -166627378 + HERV16 LTR ERVL 1682 2323 -2776 779 235 6 45 chr5 36458269 36458448 -166627084 - AluJo SINE Alu -137 175 4 239 302 78 78 chr5 36458454 36458749 -166626783 - L2 LINE L2 -18 3295 3001 244 295 58 51 chr5 36458851 36459007 -166626525 + MLT1L LTR MaLR 127 283 -332 211 133 0 22 chr5 36459292 36459337 -166626195 + (TG)n Simple_repeat Simple_repeat 1 44 0 237 286 0 24 chr5 36459776 36459860 -166625672 - L1MC4 LINE L1 -1340 6702 6621 1452 246 57 95 chr5 36460773 36461011 -166624521 + L1ME1 LINE L1 5148 5394 -772 2373 95 3 0 chr5 36461011 36461317 -166624215 + AluSc SINE Alu 1 307 -2 1452 246 57 95 chr5 36461317 36461412 -166624120 + L1ME1 LINE L1 5394 5491 -675 2288 113 0 3 chr5 36461412 36461722 -166623810 + AluSx SINE Alu 1 309 -3 1452 246 57 95 chr5 36461722 36462425 -166623107 + L1ME1 LINE L1 5491 6148 -18 1861 115 11 4 chr5 36462495 36462755 -166622777 + AluSq SINE Alu 1 262 -51 1068 116 0 0 chr5 36462758 36462905 -166622627 + AluSp/q SINE Alu 160 306 -7 1141 198 33 67 chr5 36462905 36462930 -166622602 + L1MC4a LINE L1 6251 6275 -1533 2088 130 72 23 chr5 36462930 36463277 -166622255 - THE1B LTR MaLR 0 364 1 1141 198 33 67 chr5 36463277 36463610 -166621922 + L1MC4a LINE L1 6275 6597 -1211 886 159 147 44 chr5 36463647 36463898 -166621634 + LTR12 LTR ERV1 1 277 -437 300 242 40 30 chr5 36463898 36463997 -166621535 + LTR30 LTR ERV1 544 643 -79 640 158 0 0 chr5 36463998 36464099 -166621433 + LTR12 LTR ERV1 481 581 -133 3734 241 83 18 chr5 36464135 36465266 -166620266 + L1MC4a LINE L1 6603 7807 -1 426 20 0 0 chr5 36465334 36465385 -166620147 + (TG)n Simple_repeat Simple_repeat 2 52 0 2055 133 3 0 chr5 36465649 36465949 -166619583 - AluSx SINE Alu -11 301 1 234 252 118 35 chr5 36465993 36466306 -166619226 - L1M4 LINE L1 -3104 3042 2704 516 311 67 77 chr5 36466566 36467061 -166618471 - HAL1 LINE L1 -905 1602 1113 251 263 0 26 chr5 36467174 36467250 -166618282 - HAL1 LINE L1 -1471 1036 963 295 196 0 0 chr5 36467971 36468027 -166617505 - MER116 DNA Mariner -17 63 8 2368 74 0 43 chr5 36469215 36469540 -166615992 + AluY SINE Alu 1 311 0 568 234 122 11 chr5 36469639 36470054 -166615478 - MER69 DNA AcHobo 0 2526 1992 1533 320 13 11 chr5 36470130 36470664 -166614868 - MER69 DNA AcHobo -1870 656 122 1186 125 0 0 chr5 36470699 36470867 -166614665 - AluSx SINE Alu -9 301 134 541 163 0 0 chr5 36470867 36470953 -166614579 - AluSx SINE Alu -226 86 1 214 178 0 22 chr5 36472170 36472215 -166613317 + CT-rich Low_complexity Low_complexity 2 45 0 234 0 0 0 chr5 36472215 36472241 -166613291 + (CA)n Simple_repeat Simple_repeat 1 26 0 26 50 0 0 chr5 36472287 36472327 -166613205 + AT_rich Low_complexity Low_complexity 1 40 0 1922 221 65 68 chr5 36472469 36473025 -166612507 - MLT2B3 LTR ERVL 0 554 1 7171 106 6 4 chr5 36473025 36474020 -166611512 - HERVL-B3 LTR ERVL 0 5654 4658 6034 103 43 30 chr5 36474016 36474073 -166611459 - HERVL-B3 LTR ERVL -1710 3944 3889 * 2176 94 3 35 chr5 36474073 36474391 -166611141 - AluSc SINE Alu -1 308 1 6034 103 43 30 chr5 36474391 36475252 -166610280 - HERVL-B3 LTR ERVL -1765 3889 3014 287 250 5 165 chr5 36477067 36477148 -166608384 + MER5B DNA MER1_type 1 29 -149 1993 152 116 21 chr5 36477148 36477537 -166607995 - MSTA LTR MaLR -2 426 1 287 250 5 165 chr5 36477537 36477667 -166607865 + MER5B DNA MER1_type 29 178 0 28 61 0 0 chr5 36478812 36478861 -166606671 + AT_rich Low_complexity Low_complexity 1 49 0 5446 160 23 8 chr5 36479313 36480629 -166604903 - L1PA16 LINE L1 0 6166 4839 335 310 139 19 chr5 36480843 36481001 -166604531 + MIR SINE MIR 46 222 -40 348 64 0 0 chr5 36481293 36481340 -166604192 + (CA)n Simple_repeat Simple_repeat 1 47 0 192 179 0 0 chr5 36482312 36482351 -166603181 + CT-rich Low_complexity Low_complexity 1 39 0 1543 178 7 41 chr5 36482502 36482819 -166602713 + AluJo SINE Alu 1 307 0 880 190 91 82 chr5 36483666 36484102 -166601430 - MLT1B LTR MaLR 0 390 6 1866 63 0 67 chr5 36484635 36484926 -166600606 + AluY SINE Alu 44 317 0 2141 109 0 31 chr5 36486428 36486750 -166598782 + AluSq SINE Alu 1 312 -1 9534 27 3 210 chr5 36486951 36488710 -166596822 + SVA Other Other 7 1409 0 2017 149 0 0 chr5 36489623 36489919 -166595613 + AluSx SINE Alu 1 296 -16 479 252 111 7 chr5 36490284 36490419 -166595113 + MLT1A2 LTR MaLR 27 175 -199 205 250 16 16 chr5 36490422 36490486 -166595046 + C-rich Low_complexity Low_complexity 4 67 0 2193 122 0 13 chr5 36490616 36490927 -166594605 + AluSx SINE Alu 1 307 -5 239 167 33 0 chr5 36491065 36491125 -166594407 + (TATAA)n Simple_repeat Simple_repeat 4 65 0 24 0 0 0 chr5 36491227 36491251 -166594281 + AT_rich Low_complexity Low_complexity 1 24 0 853 54 9 0 chr5 36492985 36493096 -166592436 - L1PA4 LINE L1 -2 6153 6042 2261 121 36 6 chr5 36493096 36493456 -166592076 - L1PA15 LINE L1 -4 6161 5788 1818 159 4 0 chr5 36494079 36494359 -166591173 + AluSx SINE Alu 1 281 -31 217 0 0 0 chr5 36494359 36494383 -166591149 + (CAA)n Simple_repeat Simple_repeat 1 180 0 342 247 0 12 chr5 36495036 36495121 -166590411 + MLT1I LTR MaLR 326 409 0 2199 110 0 0 chr5 36495821 36496113 -166589419 + AluSx SINE Alu 1 292 -20 250 329 0 0 chr5 36496562 36496635 -166588897 - MIR SINE MIR -1 261 189 440 347 40 36 chr5 36497921 36498195 -166587337 + MLT1J LTR MaLR 37 311 -200 2093 117 0 10 chr5 36498722 36499013 -166586519 - AluSx SINE Alu -24 288 1 965 254 177 21 chr5 36499181 36499566 -166585966 - MLT2B1 LTR ERVL -70 450 6 2021 133 0 3 chr5 36500051 36500337 -166585195 + AluSx SINE Alu 1 285 -27 26 0 0 0 chr5 36500347 36500373 -166585159 + AT_rich Low_complexity Low_complexity 1 26 0 341 346 44 15 chr5 36500593 36500729 -166584803 + MIR3 SINE MIR 20 159 -49 378 363 81 42 chr5 36501518 36501851 -166583681 - L2 LINE L2 -31 3241 2896 2119 129 38 32 chr5 36502808 36503132 -166582400 + THE1C LTR MaLR 1 329 -46 1828 137 74 37 chr5 36503132 36503483 -166582049 - THE1B LTR MaLR 0 364 1 2119 129 38 32 chr5 36503483 36503531 -166582001 + THE1C LTR MaLR 329 375 0 246 348 116 49 chr5 36504496 36504763 -166580769 + L3 LINE CR1 243 527 -1050 1527 166 80 9 chr5 36505253 36505602 -166579930 - L1MA8 LINE L1 -4 6287 5914 716 220 65 0 chr5 36505670 36505746 -166579786 + L1MA9 LINE L1 6077 6147 -165 264 30 0 0 chr5 36505746 36505779 -166579753 + (CA)n Simple_repeat Simple_repeat 2 34 0 716 220 65 0 chr5 36505779 36505888 -166579644 + L1MA9 LINE L1 6147 6274 -38 8553 139 16 6 chr5 36508928 36511140 -166574392 - L1PA10 LINE L1 -5 6163 3919 999 135 13 0 chr5 36511141 36511297 -166574235 + L1P LINE L1 3573 3730 -2416 717 97 18 9 chr5 36511297 36511410 -166574122 - MLT2B2 LTR ERVL -401 114 1 205 255 0 0 chr5 36511570 36511621 -166573911 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 204 97 0 0 chr5 36512023 36512054 -166573478 + (CAT)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr5 36513031 36513056 -166572476 + AT_rich Low_complexity Low_complexity 1 25 0 221 239 14 42 chr5 36513078 36513220 -166572312 + (TTTA)n Simple_repeat Simple_repeat 1 138 0 249 188 62 0 chr5 36514019 36514115 -166571417 + (TA)n Simple_repeat Simple_repeat 2 103 0 24 0 0 0 chr5 36514678 36514702 -166570830 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr5 36515277 36515299 -166570233 + AT_rich Low_complexity Low_complexity 1 22 0 202 367 143 0 chr5 36516316 36516414 -166569118 - MIR SINE MIR -96 166 55 1142 142 69 37 chr5 36516852 36517070 -166568462 - AluJb SINE Alu -1 311 87 2472 91 0 0 chr5 36517426 36517735 -166567797 + AluSc SINE Alu 1 309 0 2218 52 0 0 chr5 36518439 36518710 -166566822 + AluY SINE Alu 30 300 -11 1106 185 19 14 chr5 36519377 36519593 -166565939 - AluJo SINE Alu -14 298 82 26 0 0 0 chr5 36521623 36521649 -166563883 + AT_rich Low_complexity Low_complexity 1 26 0 242 356 59 17 chr5 36521864 36521982 -166563550 + L2 LINE L2 3147 3269 -3 966 213 0 14 chr5 36522038 36522245 -166563287 - L1PB4 LINE L1 -1 6155 5952 291 336 96 52 chr5 36522843 36523072 -166562460 - MER102a DNA MER1_type 0 330 92 1475 227 98 16 chr5 36523125 36523491 -166562041 - MSTD LTR MaLR 0 396 1 23 33 0 0 chr5 36523658 36523688 -166561844 + AT_rich Low_complexity Low_complexity 1 30 0 4505 278 69 30 chr5 36523839 36525743 -166559789 - L1MCa LINE L1 -1597 4967 3140 2331 83 0 0 chr5 36525743 36526043 -166559489 - AluY SINE Alu -11 300 1 4505 278 69 30 chr5 36526043 36527072 -166558460 - L1MCa LINE L1 -3424 3140 2153 1860 114 4 4 chr5 36527072 36527336 -166558196 - AluSx SINE Alu 0 312 49 4505 278 69 30 chr5 36527336 36528491 -166557041 - L1MCa LINE L1 -4411 2153 570 393 331 46 61 chr5 36528759 36529022 -166556510 - L1MCa LINE L1 -5613 432 174 3615 186 56 6 chr5 36529052 36529750 -166555782 + ERVL-B1 LTR ERVL 3212 3944 -1820 7652 185 71 38 chr5 36529768 36531178 -166554354 + ERVL-B1 LTR ERVL 4066 5538 -226 2344 140 19 73 chr5 36531178 36531635 -166553897 - L1MA8 LINE L1 -18 6273 5846 1877 160 16 0 chr5 36531635 36531941 -166553591 - AluJb SINE Alu -1 311 1 2344 140 19 73 chr5 36531941 36532003 -166553529 - L1MA8 LINE L1 -445 5846 5782 7652 185 71 38 chr5 36532003 36532231 -166553301 + ERVL-B1 LTR ERVL 5538 5757 -7 858 254 21 0 chr5 36532231 36532420 -166553112 + MLT2B1 LTR ERVL 1 193 -327 801 244 6 0 chr5 36532403 36532579 -166552953 + MLT2B2 LTR ERVL 339 515 0 * 590 223 18 0 chr5 36532929 36533041 -166552491 - MER81 DNA DNA 0 114 1 2413 197 36 53 chr5 36534029 36534558 -166550974 - MLT2B1 LTR ERVL 0 520 1 572 307 67 4 chr5 36534573 36534798 -166550734 - LTR16A LTR ERVL 0 450 212 2043 133 0 0 chr5 36534913 36535224 -166550308 + AluSq SINE Alu 1 311 0 280 267 12 0 chr5 36535240 36535326 -166550206 - LTR16A LTR ERVL -343 107 21 22 35 0 0 chr5 36536381 36536410 -166549122 + AT_rich Low_complexity Low_complexity 1 29 0 22 99 0 0 chr5 36537089 36537160 -166548372 + AT_rich Low_complexity Low_complexity 1 71 0 640 175 45 126 chr5 36537294 36537517 -166548015 + L1MA9 LINE L1 6070 6274 -38 29 28 0 0 chr5 36537517 36537553 -166547979 + AT_rich Low_complexity Low_complexity 1 36 0 2438 65 7 0 chr5 36538226 36538534 -166546998 - AluY SINE Alu 0 311 2 198 0 0 0 chr5 36539314 36539336 -166546196 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 458 231 149 8 chr5 36541306 36541440 -166544092 - MLT1J2 LTR MaLR -234 216 64 22 35 0 0 chr5 36541598 36541627 -166543905 + AT_rich Low_complexity Low_complexity 1 29 0 305 85 0 21 chr5 36541730 36541777 -166543755 - Alu SINE Alu -13 288 243 242 208 19 0 chr5 36541765 36541818 -166543714 - AluSg/x SINE Alu -133 167 114 * 2203 102 7 0 chr5 36542471 36542766 -166542766 + AluSc SINE Alu 1 297 -12 2263 115 0 0 chr5 36542771 36543075 -166542457 + AluSq SINE Alu 1 304 -9 1310 129 0 15 chr5 36544453 36544655 -166540877 - THE1-int LTR MaLR -262 1318 1120 468 145 3 0 chr5 36545283 36545385 -166540147 - L1P5 LINE L1 -448 5708 5606 23 33 0 0 chr5 36545478 36545508 -166540024 + AT_rich Low_complexity Low_complexity 1 30 0 408 182 40 30 chr5 36546002 36546101 -166539431 - MER53 DNA DNA -88 101 2 757 269 74 52 chr5 36546484 36546889 -166538643 - L2 LINE L2 -71 3242 2829 290 181 0 28 chr5 36546957 36547029 -166538503 + (CAGAGA)n Simple_repeat Simple_repeat 3 72 0 654 79 0 20 chr5 36547079 36547180 -166538352 + MER4A LTR ERV1 1 99 -565 1423 146 211 38 chr5 36547180 36547522 -166538010 + MER4A LTR ERV1 262 662 -2 626 303 89 16 chr5 36547523 36547837 -166537695 - L2 LINE L2 -518 2796 2460 287 206 33 76 chr5 36549386 36549478 -166536054 - L2 LINE L2 0 3313 3226 829 303 100 31 chr5 36549816 36549880 -166535652 - L2 LINE L2 -8 3305 3247 1991 116 0 0 chr5 36549880 36550156 -166535376 + AluSx SINE Alu 31 306 -6 829 303 100 31 chr5 36550156 36550481 -166535051 - L2 LINE L2 -66 3247 2889 1512 221 0 26 chr5 36550874 36551177 -166534355 + AluJo SINE Alu 1 295 -17 204 200 0 0 chr5 36551195 36551240 -166534292 + (CATA)n Simple_repeat Simple_repeat 2 46 0 252 0 0 0 chr5 36552221 36552249 -166533283 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2386 45 0 10 chr5 36552252 36552542 -166532990 - AluY SINE Alu -24 287 1 1732 97 32 4 chr5 36552738 36552986 -166532546 - AluSx SINE Alu -12 300 46 1051 184 25 72 chr5 36552986 36553340 -166532192 - MER31A LTR ERV1 -48 437 7 197 196 22 0 chr5 36553409 36553455 -166532077 + L2 LINE L2 3265 3311 -2 227 237 35 44 chr5 36553623 36553737 -166531795 - MLT1K LTR MaLR -115 473 361 381 269 47 34 chr5 36553814 36553963 -166531569 - MLT1K LTR MaLR -340 248 98 204 349 30 0 chr5 36554057 36554123 -166531409 - L2 LINE L2 -273 2999 2932 21 0 0 0 chr5 36554347 36554368 -166531164 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr5 36555040 36555079 -166530453 + AT_rich Low_complexity Low_complexity 1 39 0 249 250 53 38 chr5 36555520 36555652 -166529880 + MLT1I LTR MaLR 1 134 -275 414 285 6 24 chr5 36556266 36556431 -166529101 - MER46C DNA MER2_type -29 309 148 2979 209 78 73 chr5 36557585 36557939 -166527593 - Charlie1 DNA MER1_type -16 2745 2394 2361 58 41 0 chr5 36557939 36558234 -166527298 + AluY SINE Alu 1 307 -4 2979 209 78 73 chr5 36558234 36559119 -166526413 - Charlie1 DNA MER1_type -367 2394 1500 253 241 0 0 chr5 36559141 36559195 -166526337 - Charlie1 DNA MER1_type -2705 56 3 2124 123 7 0 chr5 36560725 36561027 -166524505 + AluSx SINE Alu 1 304 -8 2203 75 7 4 chr5 36561645 36561926 -166523606 + AluSg SINE Alu 1 282 -28 231 88 0 0 chr5 36562034 36562068 -166523464 + (CA)n Simple_repeat Simple_repeat 2 35 0 254 354 19 21 chr5 36562116 36562235 -166523297 - MIR SINE MIR -87 121 4 312 317 21 21 chr5 36562434 36562630 -166522902 + L1ME1 LINE L1 5972 6163 -1 399 342 35 26 chr5 36564449 36564677 -166520855 - L2 LINE L2 -359 2955 2726 21 0 0 0 chr5 36565426 36565447 -166520085 + AT_rich Low_complexity Low_complexity 1 21 0 310 302 112 12 chr5 36565896 36566065 -166519467 + L1 LINE L1 3816 4001 -2145 886 133 55 17 chr5 36566163 36566344 -166519188 + MLT2C2 LTR ERVL 1 188 -276 5231 51 1 5 chr5 36566349 36567011 -166518521 - L1PA5 LINE L1 0 6154 5495 1844 152 42 51 chr5 36567346 36567892 -166517640 - pTR5 LTR ERV1 -1155 1283 743 24 0 0 0 chr5 36568714 36568738 -166516794 + AT_rich Low_complexity Low_complexity 1 24 0 685 183 33 22 chr5 36569367 36569547 -166515985 - L1MC3 LINE L1 -19 7766 7585 1685 182 92 8 chr5 36570020 36570389 -166515143 + MSTB LTR MaLR 27 426 0 800 247 18 40 chr5 36570534 36570761 -166514771 + MER8 DNA MER2_type 18 239 0 1111 221 88 15 chr5 36571102 36571442 -166514090 + MLT1A1 LTR MaLR 1 365 0 180 0 0 0 chr5 36571446 36571466 -166514066 + (A)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr5 36571524 36571547 -166513985 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 4282 146 18 8 chr5 36571547 36571920 -166513612 - L1PA16 LINE L1 0 6166 5798 306 0 0 0 chr5 36571920 36571954 -166513578 + (TG)n Simple_repeat Simple_repeat 2 35 0 4282 146 18 8 chr5 36571954 36572353 -166513179 - L1PA16 LINE L1 -368 5798 5386 1384 97 0 0 chr5 36573001 36573208 -166512324 + L1PA13 LINE L1 5968 6174 0 300 273 87 77 chr5 36573420 36573603 -166511929 - L1ME3A LINE L1 -23 6147 5963 482 132 13 0 chr5 36574059 36574135 -166511397 - MADE1 DNA Mariner -2 78 2 264 272 33 0 chr5 36574476 36574568 -166510964 + LTR16A1 LTR ERVL 43 137 -320 533 151 25 34 chr5 36574677 36574796 -166510736 + L1MB1 LINE L1 4561 4678 -1468 3880 193 45 4 chr5 36574799 36576069 -166509463 + L1MB1 LINE L1 4835 6165 -3 240 86 0 0 chr5 36576307 36576342 -166509190 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1298 190 68 45 chr5 36576382 36576692 -166508840 + MLT1A1 LTR MaLR 5 325 -40 2336 130 8 13 chr5 36576692 36577069 -166508463 - THE1C LTR MaLR 0 375 1 1298 190 68 45 chr5 36577069 36577111 -166508421 + MLT1A1 LTR MaLR 325 365 0 1339 164 94 42 chr5 36577686 36578016 -166507516 - MSTB1 LTR MaLR -13 419 73 422 151 12 12 chr5 36578257 36578343 -166507189 - MSTB1 LTR MaLR -346 86 1 27 0 0 0 chr5 36578434 36578461 -166507071 + AT_rich Low_complexity Low_complexity 1 27 0 1871 104 4 22 chr5 36578774 36579042 -166506490 + AluSq SINE Alu 35 297 -16 317 284 0 0 chr5 36579444 36579518 -166506014 - MER2 DNA MER2_type 0 345 272 794 211 0 17 chr5 36579604 36579779 -166505753 - MER2 DNA MER2_type -172 173 2 1674 181 3 47 chr5 36579826 36580147 -166505385 - AluJb SINE Alu -5 307 1 341 191 0 0 chr5 36580288 36580351 -166505181 + MSTD LTR MaLR 15 77 -319 943 221 0 0 chr5 36580355 36580527 -166505005 - FRAM SINE Alu 0 176 5 4697 59 0 1 chr5 36580972 36581770 -166503762 - L1P2 LINE L1 -605 5549 4753 657 191 29 69 chr5 36581777 36581950 -166503582 + MLT2C1 LTR ERVL 188 353 -44 610 125 44 15 chr5 36582059 36582265 -166503267 + (TAGA)n Simple_repeat Simple_repeat 1 212 0 271 119 0 0 chr5 36582265 36582307 -166503225 + MLT2C1 LTR ERVL 417 458 -6 490 116 23 0 chr5 36582751 36582837 -166502695 + L1MA1 LINE L1 6215 6302 0 2377 135 28 26 chr5 36583155 36583498 -166502034 - L1MA3 LINE L1 0 6305 5959 252 0 0 0 chr5 36583498 36583526 -166502006 + (TA)n Simple_repeat Simple_repeat 2 29 0 2377 135 28 26 chr5 36583526 36583642 -166501890 - L1MA3 LINE L1 -346 5959 5845 2171 165 92 8 chr5 36583770 36584163 -166501369 - MSTA LTR MaLR 0 428 3 275 318 110 35 chr5 36585177 36585350 -166500182 - L2 LINE L2 -1 3271 3086 496 163 87 0 chr5 36586077 36586169 -166499363 - Tigger3(Golem) DNA MER2_type -1 3028 2929 403 238 10 0 chr5 36586174 36586275 -166499257 - HERVL40 LTR ERVL -948 4582 4481 2727 147 129 17 chr5 36586277 36586929 -166498603 - Tigger3(Golem) DNA MER2_type -95 2934 2210 282 56 0 0 chr5 36587173 36587209 -166498323 + (CA)n Simple_repeat Simple_repeat 1 36 0 1928 269 43 65 chr5 36587286 36588214 -166497318 - HERVL40 LTR ERVL -115 5415 4508 548 271 68 6 chr5 36588208 36588549 -166496983 - HERVL40 LTR ERVL -960 4570 4191 * 2066 275 81 36 chr5 36588871 36589838 -166495694 - HERVL40 LTR ERVL -1472 4058 3049 706 277 40 16 chr5 36590052 36590301 -166495231 - HERVL40 LTR ERVL -2497 3033 2779 2027 158 34 8 chr5 36591158 36591544 -166493988 - MER57A LTR ERV1 0 403 8 495 281 62 65 chr5 36591549 36591809 -166493723 - HERVL40 LTR ERVL -4307 1223 965 611 389 42 0 chr5 36592121 36592404 -166493128 - L2 LINE L2 -527 2787 2493 34 0 0 0 chr5 36593026 36593060 -166492472 + AT_rich Low_complexity Low_complexity 1 34 0 3955 137 74 55 chr5 36594617 36595574 -166489958 - pTR5 LTR ERV1 0 2606 1524 306 0 0 0 chr5 36595980 36596014 -166489518 + (TC)n Simple_repeat Simple_repeat 1 34 0 396 0 0 0 chr5 36596015 36596059 -166489473 + (TG)n Simple_repeat Simple_repeat 2 45 0 1848 198 68 5 chr5 36596110 36596478 -166489054 + MSTD LTR MaLR 1 391 -5 2205 119 6 3 chr5 36598029 36598341 -166487191 - AluSq SINE Alu 0 313 1 1675 184 0 13 chr5 36598370 36598686 -166486846 - AluJo SINE Alu 0 312 1 32 0 0 0 chr5 36598978 36599010 -166486522 + AT_rich Low_complexity Low_complexity 1 32 0 838 137 0 34 chr5 36599160 36599306 -166486226 - LTR39 LTR ERV1 -605 178 38 317 214 0 0 chr5 36599977 36600047 -166485485 + MLT1L LTR MaLR 539 608 -7 285 287 32 69 chr5 36600056 36600244 -166485288 + L2 LINE L2 1746 1926 -1388 2074 104 45 3 chr5 36600284 36600573 -166484959 - AluSq SINE Alu -12 301 1 284 344 71 50 chr5 36600815 36601138 -166484394 + L2 LINE L2 2266 2595 -719 1027 226 84 25 chr5 36601500 36601823 -166483709 + MER2 DNA MER2_type 2 343 -1 2357 87 3 0 chr5 36602412 36602722 -166482810 + AluY SINE Alu 1 311 0 879 262 34 86 chr5 36602944 36603329 -166482203 + MLT1A1 LTR MaLR 1 365 0 5465 192 60 48 chr5 36603454 36604303 -166481229 + L1MCa LINE L1 19 891 -5535 216 97 0 0 chr5 36604303 36604334 -166481198 + (CA)n Simple_repeat Simple_repeat 2 32 0 5465 192 60 48 chr5 36604334 36604803 -166480729 + L1MCa LINE L1 891 1353 -5073 6245 98 16 3 chr5 36604891 36605790 -166479742 + L1PA10 LINE L1 5254 6163 -5 5531 271 78 20 chr5 36605806 36607617 -166477915 + L1MC1 LINE L1 1212 2917 -3509 1855 173 144 5 chr5 36607617 36607993 -166477539 - MSTA LTR MaLR 0 428 1 5531 271 78 20 chr5 36607993 36608740 -166476792 + L1MC1 LINE L1 2917 5073 -1353 3146 172 47 10 chr5 36608739 36609510 -166476022 + L1MC1 LINE L1 5386 6177 -436 * 1273 66 6 11 chr5 36609654 36609835 -166475697 + AluY SINE Alu 126 305 -6 243 0 0 0 chr5 36610214 36610241 -166475291 + (TG)n Simple_repeat Simple_repeat 2 28 0 26 0 0 0 chr5 36612006 36612032 -166473500 + AT_rich Low_complexity Low_complexity 1 26 0 1729 185 3 0 chr5 36612191 36612478 -166473054 - AluSx SINE Alu -16 296 9 254 325 52 56 chr5 36612721 36612970 -166472562 + MER102b DNA MER1_type 84 331 -10 41819 38 24 2 chr5 36612987 36619004 -166466528 + L1PA3 LINE L1 2 6155 0 1413 201 64 56 chr5 36619336 36619729 -166465803 - MSTD LTR MaLR 0 396 1 1254 19 6 19 chr5 36619877 36620036 -166465496 - L1PA4 LINE L1 0 6155 5999 503 203 45 45 chr5 36620318 36620451 -166465081 + L1MA9 LINE L1 6140 6272 -40 32 57 0 0 chr5 36620695 36620748 -166464784 + AT_rich Low_complexity Low_complexity 1 53 0 879 169 0 12 chr5 36620893 36621053 -166464479 + L1PB3 LINE L1 5995 6152 -2 3699 82 8 6 chr5 36621282 36621792 -166463740 - MER9 LTR ERVK 0 511 1 224 250 0 0 chr5 36622973 36623025 -166462507 + A-rich Low_complexity Low_complexity 1 52 0 25 65 0 0 chr5 36624108 36624154 -166461378 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr5 36625243 36625272 -166460260 + AT_rich Low_complexity Low_complexity 1 29 0 417 300 70 25 chr5 36625282 36625482 -166460050 + L1ME1 LINE L1 5952 6160 -6 1195 231 140 3 chr5 36625989 36626310 -166459222 - MLT1A1 LTR MaLR 0 365 1 266 356 132 15 chr5 36627568 36627773 -166457759 + MIR SINE MIR 2 230 -32 21 0 0 0 chr5 36628454 36628475 -166457057 + AT_rich Low_complexity Low_complexity 1 21 0 951 241 22 0 chr5 36628659 36628937 -166456595 - MER33 DNA MER1_type -15 309 26 188 301 114 78 chr5 36629759 36629853 -166455679 + L3 LINE CR1 802 906 -671 671 162 62 22 chr5 36629853 36630032 -166455500 + MER53 DNA DNA 1 186 -3 188 301 114 78 chr5 36630032 36630103 -166455429 + L3 LINE CR1 906 973 -604 182 342 26 0 chr5 36630256 36630332 -166455200 + L3 LINE CR1 1219 1296 -281 26 50 0 0 chr5 36630467 36630507 -166455025 + AT_rich Low_complexity Low_complexity 1 40 0 28 86 0 0 chr5 36630601 36630671 -166454861 + AT_rich Low_complexity Low_complexity 1 70 0 721 307 194 2 chr5 36631539 36631956 -166453576 - L2 LINE L2 -3 3310 2814 496 344 70 43 chr5 36632650 36633287 -166452245 + L2 LINE L2 2652 3311 -2 1979 143 0 3 chr5 36634158 36634501 -166451031 + AluSx SINE Alu 7 348 0 297 324 10 0 chr5 36635018 36635120 -166450412 + L1ME LINE L1 5543 5645 -476 186 43 0 0 chr5 36636891 36636914 -166448618 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2605 296 102 41 chr5 36636958 36638105 -166447427 + L1MDb LINE L1 12 1228 -5181 2798 250 80 31 chr5 36638127 36639317 -166446215 + L1MDb LINE L1 1353 2613 -3793 238 258 166 65 chr5 36639472 36639689 -166445843 - Charlie8 DNA MER1_type -1004 1413 77 213 342 39 22 chr5 36640848 36640999 -166444533 + MIR3 SINE MIR 18 172 -36 27 0 0 0 chr5 36641206 36641233 -166444299 + AT_rich Low_complexity Low_complexity 1 27 0 24 67 0 0 chr5 36641353 36641398 -166444134 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr5 36641454 36641476 -166444056 + AT_rich Low_complexity Low_complexity 1 22 0 33 43 0 0 chr5 36642598 36642645 -166442887 + AT_rich Low_complexity Low_complexity 1 47 0 1928 135 56 36 chr5 36642664 36643020 -166442512 + THE1B LTR MaLR 1 363 -1 10582 119 11 4 chr5 36643021 36644590 -166440942 + THE1B-int LTR MaLR 1 1580 0 2086 128 47 36 chr5 36644590 36644950 -166440582 + THE1B LTR MaLR 1 364 0 237 100 0 0 chr5 36645162 36645202 -166440330 - L1MA3 LINE L1 -8 6297 6258 * 326 167 0 0 chr5 36645198 36645258 -166440274 + L1MA1 LINE L1 5952 6011 -291 242 299 142 16 chr5 36645274 36645401 -166440131 - MIR SINE MIR -64 198 56 25 83 0 0 chr5 36645597 36645657 -166439875 + AT_rich Low_complexity Low_complexity 1 60 0 24 0 0 0 chr5 36646448 36646472 -166439060 + AT_rich Low_complexity Low_complexity 1 24 0 1067 265 92 35 chr5 36646492 36646862 -166438670 - L1MC4 LINE L1 -1039 7003 6613 4453 79 11 2 chr5 36646879 36647502 -166438030 - L1PA7 LINE L1 0 6154 5526 5098 100 13 16 chr5 36647503 36648271 -166437261 + L1P LINE L1 1754 2519 -3627 2247 103 3 0 chr5 36648268 36648589 -166436943 + L1P LINE L1 3554 3875 -2271 * 27 62 0 0 chr5 36649280 36649328 -166436204 + AT_rich Low_complexity Low_complexity 1 48 0 32 43 0 0 chr5 36649826 36649872 -166435660 + AT_rich Low_complexity Low_complexity 1 46 0 628 138 62 8 chr5 36649872 36650002 -166435530 - L1MA8 LINE L1 -20 6271 6135 279 337 68 0 chr5 36651292 36651482 -166434050 + L1ME LINE L1 5488 5690 -431 1862 136 0 27 chr5 36651795 36652096 -166433436 + AluSx SINE Alu 3 295 -17 303 324 54 18 chr5 36652305 36652527 -166433005 + L1MC/D LINE L1 5315 5544 -2264 363 250 16 32 chr5 36652568 36652692 -166432840 + L1MEc LINE L1 35 156 -6240 890 257 85 20 chr5 36652725 36653079 -166432453 - MLT1C LTR MaLR -32 435 59 1053 217 110 82 chr5 36653086 36653450 -166432082 + MLT1A2 LTR MaLR 1 374 0 579 351 82 53 chr5 36653502 36654072 -166431460 + L1MEc LINE L1 216 802 -5594 365 256 57 11 chr5 36654098 36654274 -166431258 + L1MEc LINE L1 903 1086 -5310 1364 228 39 75 chr5 36654283 36654721 -166430811 + MSTB2 LTR MaLR 19 440 -17 664 299 96 47 chr5 36654735 36655520 -166430012 + L1MEc LINE L1 1084 1906 -4490 1112 167 99 30 chr5 36655531 36655655 -166429877 - L1M3 LINE L1 -484 5684 5570 1852 133 26 47 chr5 36655655 36656037 -166429495 - THE1C LTR MaLR -1 374 1 1112 167 99 30 chr5 36656037 36656145 -166429387 - L1M3 LINE L1 -598 5570 5436 772 230 11 17 chr5 36656151 36656325 -166429207 - FRAM SINE Alu -4 172 1 1181 175 41 12 chr5 36656330 36656671 -166428861 - L1M3 LINE L1 -743 5403 5087 1973 166 93 0 chr5 36656728 36657095 -166428437 + LTR42 LTR ERVL 71 471 -24 438 225 9 54 chr5 36657120 36657231 -166428301 + L1MA10 LINE L1 5675 5780 -388 324 188 0 0 chr5 36657231 36657300 -166428232 + (TG)n Simple_repeat Simple_repeat 2 70 0 242 213 0 0 chr5 36657305 36657352 -166428180 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 2300 179 60 23 chr5 36657352 36657883 -166427649 + L1MA10 LINE L1 5783 6333 -1 1268 246 105 30 chr5 36657885 36658586 -166426946 + L1MEc LINE L1 1970 2690 -3525 202 206 29 0 chr5 36659304 36659372 -166426160 + (TA)n Simple_repeat Simple_repeat 1 70 0 303 276 35 0 chr5 36659380 36659467 -166426065 + L1MC4 LINE L1 6614 6703 -1339 682 211 11 11 chr5 36659480 36659660 -166425872 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 256 236 22 22 chr5 36659678 36659767 -166425765 - L1MC4 LINE L1 -1340 6702 6614 256 271 0 21 chr5 36659778 36659874 -166425658 - L1MC4 LINE L1 -1340 6702 6609 743 329 104 31 chr5 36661066 36661546 -166423986 + L2 LINE L2 2397 2911 -403 5268 144 78 34 chr5 36661555 36661890 -166423642 - Tigger3b DNA MER2_type -1797 1231 912 203 61 30 0 chr5 36661890 36661923 -166423609 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 5268 144 78 34 chr5 36661923 36662663 -166422869 - Tigger3b DNA MER2_type -2116 912 109 288 353 41 0 chr5 36662746 36662868 -166422664 + L2 LINE L2 3182 3308 -5 475 70 76 29 chr5 36663108 36663279 -166422253 + (TA)n Simple_repeat Simple_repeat 1 179 0 2112 125 0 0 chr5 36663280 36663575 -166421957 - AluSx SINE Alu -16 296 2 3294 194 14 14 chr5 36663617 36664322 -166421210 - L1MB3 LINE L1 -3 6180 5476 1767 212 37 47 chr5 36664344 36665027 -166420505 - L1M3 LINE L1 -657 5762 5083 670 262 37 13 chr5 36665009 36665307 -166420225 - L1M3 LINE L1 -2763 3619 3315 * 815 140 173 0 chr5 36665307 36665457 -166420075 - AluSg/x SINE Alu 0 310 135 9256 193 80 28 chr5 36665468 36666645 -166418887 - L1M3 LINE L1 -3114 3268 2154 1527 205 6 22 chr5 36666645 36666962 -166418570 - AluJb SINE Alu 0 312 1 9256 193 80 28 chr5 36666962 36667443 -166418089 - L1M3 LINE L1 -4228 2154 1699 207 0 0 0 chr5 36667443 36667466 -166418066 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9256 193 80 28 chr5 36667466 36668605 -166416927 - L1M3 LINE L1 -4683 1699 320 2130 105 0 0 chr5 36669262 36669539 -166415993 + AluSx SINE Alu 27 303 -9 234 211 53 0 chr5 36671525 36671601 -166413931 + (TTA)n Simple_repeat Simple_repeat 3 82 0 1432 238 85 21 chr5 36672168 36672593 -166412939 + MLT1C LTR MaLR 3 454 -13 1922 103 0 4 chr5 36672992 36673253 -166412279 + AluSg SINE Alu 39 298 -12 2495 113 3 3 chr5 36674508 36674872 -166410660 + THE1B LTR MaLR 1 364 0 184 171 0 24 chr5 36675248 36675289 -166410243 + L2 LINE L2 3270 3309 -4 24 53 0 0 chr5 36676431 36676469 -166409063 + AT_rich Low_complexity Low_complexity 1 38 0 198 0 0 0 chr5 36676503 36676525 -166409007 + (TA)n Simple_repeat Simple_repeat 2 23 0 240 211 0 18 chr5 36677475 36677532 -166408000 + MER58 DNA MER1_type 53 108 -2312 818 249 129 11 chr5 36677844 36678217 -166407315 + L1MC/D LINE L1 4586 5002 -1144 4643 117 11 4 chr5 36678220 36678922 -166406610 + L1MA1 LINE L1 5408 6114 -188 419 169 13 0 chr5 36678922 36678999 -166406533 - MADE1 DNA Mariner 0 80 3 1155 130 5 0 chr5 36679000 36679184 -166406348 + L1MA1 LINE L1 6112 6296 -6 391 254 70 5 chr5 36679202 36679403 -166406129 + L1MC/D LINE L1 4993 5206 -940 611 201 60 0 chr5 36679407 36679591 -166405941 + L1MC/D LINE L1 5256 5450 -2592 421 86 0 0 chr5 36730291 36730349 -166355183 + THE1C LTR MaLR 2 59 -316 2078 140 56 8 chr5 36730360 36730717 -166354815 + THE1C LTR MaLR 1 374 -1 1492 176 31 0 chr5 36730988 36731278 -166354254 + L1MA5A LINE L1 4685 4983 -1163 673 122 9 0 chr5 36731296 36731403 -166354129 - L1M LINE L1 -875 5428 5321 5919 139 38 44 chr5 36731742 36733058 -166352474 + L1MA5A LINE L1 4960 6291 -6 26 50 0 0 chr5 36733058 36733098 -166352434 + AT_rich Low_complexity Low_complexity 1 40 0 28 48 0 0 chr5 36733189 36733231 -166352301 + AT_rich Low_complexity Low_complexity 1 42 0 289 337 10 31 chr5 36735165 36735263 -166350269 + MIR SINE MIR 6 101 -161 4532 85 6 14 chr5 36735775 36736420 -166349112 + L1PA10 LINE L1 5528 6167 -1 196 355 0 0 chr5 36737071 36737133 -166348399 + MIR SINE MIR 49 110 -152 2134 209 0 7 chr5 36737209 36737615 -166347917 - ERVL LTR ERVL -444 5320 4918 3970 244 45 10 chr5 36737617 36738580 -166346952 - ERVL LTR ERVL -953 4811 3816 5095 140 35 6 chr5 36738939 36740017 -166345515 + L1PA16 LINE L1 5063 6166 0 1938 132 13 3 chr5 36740419 36740729 -166344803 + HSMAR2 DNA Mariner 2 314 -988 2516 71 0 0 chr5 36740729 36741040 -166344492 + AluY SINE Alu 1 311 0 3414 190 29 1 chr5 36741047 36741714 -166343818 + HSMAR2 DNA Mariner 617 1301 -1 21 0 0 0 chr5 36741875 36741896 -166343636 + AT_rich Low_complexity Low_complexity 1 21 0 25 75 0 0 chr5 36742954 36743007 -166342525 + AT_rich Low_complexity Low_complexity 1 53 0 509 333 156 20 chr5 36743756 36744198 -166341334 - L2 LINE L2 0 3313 2812 3236 78 2 7 chr5 36744203 36744653 -166340879 - LTR7 LTR ERV1 -2 448 1 2513 80 49 13 chr5 36744653 36745041 -166340491 - HERVH LTR ERV1 0 7713 7312 1352 139 19 0 chr5 36745031 36745247 -166340285 - HERVH LTR ERV1 -1894 5819 5600 * 4165 154 1 1 chr5 36745248 36745910 -166339622 - HERVH LTR ERV1 -2564 5149 4488 3264 122 6 6 chr5 36745913 36746414 -166339118 - HERVH LTR ERV1 -3721 3992 3492 946 133 7 0 chr5 36746404 36746554 -166338978 - HERVH LTR ERV1 -4423 3290 3140 * 19998 98 16 10 chr5 36746533 36749511 -166336021 - HERVH LTR ERV1 -4718 2995 1 3208 74 11 7 chr5 36749513 36749959 -166335573 - LTR7 LTR ERV1 -2 448 1 301 337 57 34 chr5 36749993 36750168 -166335364 - L2 LINE L2 -534 2780 2602 293 234 16 16 chr5 36750508 36750572 -166334960 + L2 LINE L2 2985 3048 -224 1394 212 79 6 chr5 36750861 36751201 -166334331 - MLT1A1 LTR MaLR 0 365 1 27 0 0 0 chr5 36751467 36751494 -166334038 + AT_rich Low_complexity Low_complexity 1 27 0 1663 259 56 51 chr5 36752963 36753605 -166331927 - L1ME1 LINE L1 -5 6173 5526 1440 286 58 68 chr5 36753630 36754665 -166330867 - L1M2 LINE L1 -4292 2666 1229 21 0 0 0 chr5 36754948 36754969 -166330563 + AT_rich Low_complexity Low_complexity 1 21 0 414 152 15 0 chr5 36755995 36756061 -166329471 + AluS SINE Alu 3 69 -234 8767 263 71 50 chr5 36756194 36756489 -166329043 - ERVL LTR ERVL -2281 3483 3196 7169 50 0 0 chr5 36756489 36757318 -166328214 + LTR5 LTR ERVK 1 829 -140 8767 263 71 50 chr5 36757318 36757421 -166328111 - ERVL LTR ERVL -2568 3196 3097 1749 45 0 0 chr5 36757421 36757622 -166327910 + LTR5 LTR ERVK 769 969 0 8767 263 71 50 chr5 36757622 36760137 -166325395 - ERVL LTR ERVL -2667 3097 508 2173 210 72 98 chr5 36760463 36761168 -166324364 - LTR8A LTR ERV1 -7 720 34 684 183 8 8 chr5 36761421 36761541 -166323991 + FLAM_A SINE Alu 1 120 -13 2352 91 0 3 chr5 36762091 36762398 -166323134 + AluSq SINE Alu 1 306 -7 1623 186 3 72 chr5 36762486 36762862 -166322670 - MLT1B LTR MaLR 0 390 41 216 0 0 0 chr5 36763371 36763395 -166322137 + (AAATG)n Simple_repeat Simple_repeat 3 26 0 186 43 0 0 chr5 36763707 36763730 -166321802 + (TA)n Simple_repeat Simple_repeat 2 24 0 180 77 0 0 chr5 36765198 36765224 -166320308 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 345 110 0 200 chr5 36765282 36765382 -166320150 - MADE1 DNA Mariner 0 80 1 1935 125 28 0 chr5 36766769 36767058 -166318474 + AluSx SINE Alu 1 297 -15 207 100 0 0 chr5 36768430 36768460 -166317072 + (T)n Simple_repeat Simple_repeat 1 30 0 557 224 31 25 chr5 36770893 36771054 -166314478 - L1MA9 LINE L1 -1 6311 6150 * 1169 205 37 16 chr5 36771050 36771372 -166314160 - L1 LINE L1 -1441 4705 4377 1877 174 126 5 chr5 36771374 36771754 -166313778 - MSTA LTR MaLR -2 426 1 8189 200 42 2 chr5 36771762 36773349 -166312183 - MSTA-int LTR MaLR -1 1650 1 1405 146 91 8 chr5 36773349 36773603 -166311929 - MSTA LTR MaLR 0 428 154 1803 170 159 5 chr5 36773603 36773974 -166311558 - MSTA LTR MaLR 0 428 1 957 286 8 0 chr5 36775526 36775774 -166309758 + HERV16 LTR ERVL 1058 1307 -3689 1618 174 19 0 chr5 36775900 36776165 -166309367 + MSTA LTR MaLR 159 428 0 1819 336 47 24 chr5 36776454 36776821 -166308711 + HERV16 LTR ERVL 1665 2022 -2974 2146 188 39 12 chr5 36776821 36777236 -166308296 + MSTB LTR MaLR 1 426 0 1819 336 47 24 chr5 36777236 36777729 -166307803 + HERV16 LTR ERVL 2022 2544 -2452 264 119 51 0 chr5 36777810 36777869 -166307663 + (TA)n Simple_repeat Simple_repeat 2 63 0 414 254 9 26 chr5 36777869 36777983 -166307549 + HERV16 LTR ERVL 2607 2718 -2278 969 236 20 18 chr5 36778131 36778398 -166307134 - MER74C LTR ERVL -196 362 15 757 329 105 51 chr5 36778462 36779309 -166306223 + HERV16 LTR ERVL 3829 4721 -933 263 333 59 52 chr5 36779556 36779962 -166305570 + HERV16 LTR ERVL 4969 5377 -387 469 361 57 25 chr5 36780081 36780519 -166305013 + LTR16B LTR ERVL 1 452 -12 210 346 38 30 chr5 36782464 36782597 -166302935 - L2 LINE L2 -24 3289 3156 25 0 0 0 chr5 36783975 36784000 -166301532 + AT_rich Low_complexity Low_complexity 1 25 0 317 62 21 0 chr5 36784066 36784114 -166301418 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 1014 201 12 136 chr5 36784341 36784679 -166300853 + MLT1B LTR MaLR 91 386 -4 406 295 43 56 chr5 36785629 36785863 -166299669 + HAL1 LINE L1 817 1047 -1460 385 270 96 108 chr5 36786069 36786413 -166299119 - L2 LINE L2 -1 3312 2973 440 330 53 23 chr5 36786434 36786698 -166298834 + HAL1 LINE L1 1265 1536 -971 1402 207 21 18 chr5 36786807 36787092 -166298440 - AluJo SINE Alu -26 286 1 540 270 124 22 chr5 36787277 36787455 -166298077 + MIR SINE MIR 30 225 -37 328 308 8 8 chr5 36787484 36787604 -166297928 + CT-rich Low_complexity Low_complexity 5 124 0 237 197 16 16 chr5 36788109 36788170 -166297362 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 22 35 0 0 chr5 36788813 36788842 -166296690 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr5 36789312 36789334 -166296198 + AT_rich Low_complexity Low_complexity 1 22 0 457 323 45 0 chr5 36789739 36789872 -166295660 + MER5B DNA MER1_type 40 178 0 250 288 15 0 chr5 36790196 36790262 -166295270 + MER5B DNA MER1_type 2 68 -110 332 303 46 72 chr5 36790527 36790722 -166294810 - HAL1b LINE L1 -876 472 283 1665 178 4 4 chr5 36790745 36791020 -166294512 - AluJo SINE Alu -37 275 1 318 299 56 53 chr5 36791164 36791448 -166294084 - L1M4c LINE L1 -5172 1212 928 1353 211 131 21 chr5 36791782 36792203 -166293329 - MLT1C LTR MaLR 0 467 1 27 0 0 0 chr5 36792263 36792290 -166293242 + AT_rich Low_complexity Low_complexity 1 27 0 1172 333 76 23 chr5 36792292 36792417 -166293115 - L2 LINE L2 -81 3232 3115 216 67 0 0 chr5 36792417 36792447 -166293085 + (TA)n Simple_repeat Simple_repeat 2 31 0 1172 333 76 23 chr5 36792447 36793200 -166292332 - L2 LINE L2 -198 3115 2311 194 316 145 0 chr5 36793313 36793389 -166292143 - MER5A DNA MER1_type 0 189 103 329 93 0 0 chr5 36793894 36793937 -166291595 - THE1C LTR MaLR -1 374 332 10032 117 5 3 chr5 36794060 36795489 -166290043 - THE1B-int LTR MaLR -147 1433 3 2102 118 30 33 chr5 36795491 36795856 -166289676 - THE1B LTR MaLR 0 364 1 239 299 84 9 chr5 36797677 36797784 -166287748 + MIR SINE MIR 111 225 -37 259 296 118 61 chr5 36797936 36798216 -166287316 - MLT1K LTR MaLR -121 467 172 216 111 0 0 chr5 36798340 36798376 -166287156 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 29 0 0 0 chr5 36799342 36799371 -166286161 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr5 36799879 36799907 -166285625 + AT_rich Low_complexity Low_complexity 1 28 0 208 0 0 0 chr5 36800156 36800179 -166285353 + (TTTTA)n Simple_repeat Simple_repeat 2 130 0 1862 161 0 0 chr5 36800179 36800452 -166285080 - AluJb SINE Alu -1 307 13 286 167 0 19 chr5 36800489 36800543 -166284989 + MIR SINE MIR 172 224 -38 1793 137 48 3 chr5 36800824 36801116 -166284416 + AluSx SINE Alu 1 305 -7 1154 271 84 25 chr5 36801616 36802022 -166283510 - LTR40b LTR ERVL 0 462 33 357 298 68 0 chr5 36802237 36802398 -166283134 + HAL1 LINE L1 2240 2411 -96 247 305 0 11 chr5 36802454 36802549 -166282983 + (TATATG)n Simple_repeat Simple_repeat 6 99 0 638 234 115 8 chr5 36805135 36805387 -166280145 - MER33 DNA MER1_type -17 307 29 5620 23 3 0 chr5 36805387 36806046 -166279486 + L1PA4 LINE L1 5495 6155 0 21 0 0 0 chr5 36806306 36806327 -166279205 + AT_rich Low_complexity Low_complexity 1 21 0 315 293 163 59 chr5 36806670 36806909 -166278623 + L2 LINE L2 2234 2497 -817 1834 166 125 13 chr5 36807349 36807734 -166277798 - MSTA LTR MaLR 0 428 1 7581 223 62 10 chr5 36807734 36809234 -166276298 - MSTA-int LTR MaLR 0 1580 3 1784 161 130 18 chr5 36809236 36809621 -166275911 - MSTA LTR MaLR 0 428 1 252 276 97 21 chr5 36810229 36810374 -166275158 - MER67D LTR ERV1 0 514 359 1018 242 58 8 chr5 36810397 36810657 -166274875 - MER67C LTR ERV1 -325 385 113 428 228 72 84 chr5 36810659 36810922 -166274610 + MER4C LTR ERV1 1 260 -205 1197 232 101 41 chr5 36810954 36811563 -166273969 - LTR48B LTR ERV1 0 707 2 945 218 61 75 chr5 36811804 36812084 -166273448 + AluJo SINE Alu 5 280 -32 252 0 0 0 chr5 36812087 36812115 -166273417 + (CA)n Simple_repeat Simple_repeat 1 28 0 263 368 111 14 chr5 36812222 36812366 -166273166 + L2 LINE L2 3114 3271 -1 231 61 0 0 chr5 36812722 36812755 -166272777 + (GA)n Simple_repeat Simple_repeat 2 34 0 1879 119 7 53 chr5 36812765 36813067 -166272465 - AluSx SINE Alu -24 288 1 244 364 37 21 chr5 36813259 36813446 -166272086 - L2 LINE L2 -823 2491 2302 25 0 0 0 chr5 36814167 36814192 -166271340 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr5 36814897 36814919 -166270613 + AT_rich Low_complexity Low_complexity 1 22 0 1639 179 7 0 chr5 36815025 36815299 -166270233 + AluSx SINE Alu 7 282 -30 755 250 11 17 chr5 36816736 36816912 -166268620 + Charlie1a DNA MER1_type 3 177 -1278 2106 252 42 20 chr5 36817324 36817964 -166267568 + Charlie1a DNA MER1_type 373 1026 -429 239 316 221 9 chr5 36818267 36818333 -166267199 - L2 LINE L2 -171 3142 3091 1470 77 10 0 chr5 36818333 36818529 -166267003 - AluSp SINE Alu -1 312 115 239 316 221 9 chr5 36818529 36818752 -166266780 - L2 LINE L2 -222 3091 2793 1526 214 138 22 chr5 36818777 36819146 -166266386 + MSTB LTR MaLR 1 412 -14 181 370 160 20 chr5 36819173 36819373 -166266159 + MIR SINE MIR 14 241 -21 435 336 51 23 chr5 36819466 36819683 -166265849 - L2 LINE L2 -570 2744 2522 438 258 159 7 chr5 36820129 36820280 -166265252 - MER5A DNA MER1_type -5 184 11 1734 129 59 18 chr5 36821211 36821497 -166264035 + AluSx SINE Alu 1 298 -14 1315 88 0 0 chr5 36821640 36821811 -166263721 - AluY SINE Alu -11 300 130 18886 170 44 18 chr5 36822104 36824619 -166260913 - L1MA3 LINE L1 0 7724 5276 1936 151 23 47 chr5 36824619 36825003 -166260529 + THE1C LTR MaLR 1 375 0 18886 170 44 18 chr5 36825003 36825098 -166260434 - L1MA3 LINE L1 -2448 5276 5185 270 0 0 0 chr5 36825098 36825128 -166260404 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 18886 170 44 18 chr5 36825128 36829941 -166255591 - L1MA3 LINE L1 -2539 5185 91 300 27 0 0 chr5 36829941 36829978 -166255554 + (TG)n Simple_repeat Simple_repeat 2 38 0 18886 170 44 18 chr5 36829978 36830055 -166255477 - L1MA3 LINE L1 -7633 91 17 214 245 0 0 chr5 36830184 36830233 -166255299 + (CACCAT)n Simple_repeat Simple_repeat 5 53 0 5577 258 65 44 chr5 36831002 36833954 -166251578 + L1MD2 LINE L1 2608 5637 -722 1908 203 29 37 chr5 36833954 36834442 -166251090 - MER66B LTR ERV1 -2 484 1 5577 258 65 44 chr5 36834442 36835163 -166250369 + L1MD2 LINE L1 5637 6341 -18 21 0 0 0 chr5 36835226 36835247 -166250285 + AT_rich Low_complexity Low_complexity 1 21 0 2143 120 0 10 chr5 36835259 36835567 -166249965 + AluSx SINE Alu 1 305 -7 269 250 15 0 chr5 36837610 36837678 -166247854 + (TA)n Simple_repeat Simple_repeat 1 69 0 23 0 0 0 chr5 36837793 36837816 -166247716 + AT_rich Low_complexity Low_complexity 1 23 0 256 323 68 12 chr5 36837869 36838030 -166247502 + L1MEc LINE L1 39 208 -6188 264 208 26 52 chr5 36838078 36838155 -166247377 + MER63 DNA MER1_type 660 734 -326 400 320 102 54 chr5 36838236 36839231 -166246301 + L1MEc LINE L1 186 1227 -5169 579 207 56 22 chr5 36839772 36839951 -166245581 + MER53 DNA DNA 2 186 -3 1756 146 0 41 chr5 36840506 36840835 -166244697 + AluSx SINE Alu 1 317 0 26 0 0 0 chr5 36841127 36841153 -166244379 + AT_rich Low_complexity Low_complexity 1 26 0 1210 113 0 0 chr5 36841454 36841614 -166243918 + AluSg/x SINE Alu 132 291 -19 2010 137 15 66 chr5 36841786 36842181 -166243351 + THE1C LTR MaLR 1 375 0 4090 115 2 5 chr5 36842183 36842749 -166242783 + THE1C-int LTR MaLR 1017 1580 0 2282 128 16 19 chr5 36842749 36843125 -166242407 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr5 36843851 36843874 -166241658 + AT_rich Low_complexity Low_complexity 1 23 0 380 286 167 9 chr5 36845737 36846163 -166239369 - L1M4 LINE L1 -1372 4774 4282 267 133 0 0 chr5 36846312 36846357 -166239175 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 32 26 0 0 chr5 36846381 36846420 -166239112 + AT_rich Low_complexity Low_complexity 1 39 0 324 316 36 12 chr5 36846646 36846814 -166238718 - L1M4 LINE L1 -2336 3810 3639 282 29 0 0 chr5 36846869 36846904 -166238628 + (T)n Simple_repeat Simple_repeat 1 35 0 358 316 36 27 chr5 36847795 36848124 -166237408 - L1MEc LINE L1 -5019 1377 1046 901 129 0 0 chr5 36848195 36848327 -166237205 - MER41A LTR ERV1 -422 132 1 738 131 54 0 chr5 36849896 36850026 -166235506 + MER41A LTR ERV1 417 553 -1 1390 65 0 0 chr5 36850590 36850759 -166234773 + AluY SINE Alu 133 301 -10 35 0 0 0 chr5 36851251 36851286 -166234246 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr5 36851494 36851522 -166234010 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr5 36852285 36852320 -166233212 + AT_rich Low_complexity Low_complexity 1 35 0 2347 78 0 7 chr5 36852363 36852670 -166232862 - AluY SINE Alu -6 305 1 21 0 0 0 chr5 36853010 36853031 -166232501 + AT_rich Low_complexity Low_complexity 1 21 0 527 213 149 27 chr5 36853535 36853723 -166231809 + L1ME3A LINE L1 5889 6099 -71 23 33 0 0 chr5 36853757 36853787 -166231745 + AT_rich Low_complexity Low_complexity 1 30 0 343 310 75 57 chr5 36853791 36854123 -166231409 + L1M4 LINE L1 5054 5391 -755 880 265 49 12 chr5 36854368 36854613 -166230919 - MLT1E3 LTR MaLR -370 254 1 1222 205 46 49 chr5 36854859 36855229 -166230303 + MLT1A2 LTR MaLR 4 372 -2 2388 69 0 0 chr5 36857545 36857836 -166227696 - AluSg SINE Alu -9 301 11 2182 72 0 31 chr5 36858010 36858300 -166227232 - AluY SINE Alu -6 305 25 1907 131 109 3 chr5 36858439 36858768 -166226764 - THE1B LTR MaLR 0 364 1 6095 104 37 10 chr5 36858789 36859718 -166225814 - LTR13 LTR ERVK 0 954 1 198 143 0 0 chr5 36859798 36859833 -166225699 + (TG)n Simple_repeat Simple_repeat 2 36 0 958 180 77 109 chr5 36861227 36861604 -166223928 - MLT1A1 LTR MaLR 0 365 1 2224 93 10 0 chr5 36861889 36862191 -166223341 + AluSq SINE Alu 1 305 -8 292 318 65 56 chr5 36863130 36863344 -166222188 - MIR SINE MIR -21 241 26 21 57 0 0 chr5 36864212 36864247 -166221285 + AT_rich Low_complexity Low_complexity 1 35 0 270 0 0 0 chr5 36864800 36864830 -166220702 + (T)n Simple_repeat Simple_repeat 1 30 0 1336 160 4 4 chr5 36864836 36865067 -166220465 - AluSx SINE Alu -81 231 1 42 65 0 0 chr5 36865367 36865444 -166220088 + AT_rich Low_complexity Low_complexity 1 77 0 298 239 124 73 chr5 36865467 36865657 -166219875 - HAL1 LINE L1 -4 2503 2324 2150 129 3 3 chr5 36865657 36865968 -166219564 - AluSx SINE Alu 0 312 2 298 239 124 73 chr5 36865968 36866229 -166219303 - HAL1 LINE L1 -183 2324 2029 722 285 97 24 chr5 36866505 36866971 -166218561 - HAL1 LINE L1 -895 1612 1113 291 71 0 0 chr5 36867258 36867300 -166218232 + (TG)n Simple_repeat Simple_repeat 1 42 0 324 304 7 36 chr5 36867788 36867926 -166217606 - LTR33 LTR ERVL 0 521 388 505 148 25 0 chr5 36867935 36868016 -166217516 - MSTA LTR MaLR 0 428 346 6139 73 28 0 chr5 36868162 36868985 -166216547 - L1PA7 LINE L1 -5 6149 5304 6351 83 3 2 chr5 36868987 36869886 -166215646 + L1PA7 LINE L1 4382 5281 -865 1793 168 48 0 chr5 36870367 36870700 -166214832 - MSTA LTR MaLR -79 349 1 880 271 187 7 chr5 36871144 36871657 -166213875 + MLT1E1 LTR MaLR 1 654 0 390 127 0 42 chr5 36871657 36871728 -166213804 + L1PA15 LINE L1 4690 4757 -1389 5624 128 11 4 chr5 36871728 36872854 -166212678 + L1PA15 LINE L1 5032 6164 -1 4972 142 54 5 chr5 36873072 36873960 -166211572 - L1MA6 LINE L1 0 6300 5369 518 204 0 0 chr5 36873955 36874058 -166211474 - L1MA6 LINE L1 -1069 5077 4975 * 195 42 0 0 chr5 36874978 36875002 -166210530 + (TC)n Simple_repeat Simple_repeat 2 25 0 609 299 102 31 chr5 36875020 36875562 -166209970 - L1MC4 LINE L1 -166 7876 7297 479 168 148 0 chr5 36875571 36875672 -166209860 + L1PA16 LINE L1 6049 6164 -2 364 156 15 96 chr5 36875975 36876110 -166209422 + L1M4 LINE L1 3834 3957 -2189 322 277 58 7 chr5 36877166 36877303 -166208229 - L1ME3 LINE L1 -1 6161 6018 427 317 89 47 chr5 36877328 36878303 -166207229 - L1M4 LINE L1 -1834 4312 3297 31 0 0 0 chr5 36878922 36878953 -166206579 + AT_rich Low_complexity Low_complexity 1 31 0 757 188 7 7 chr5 36880474 36880618 -166204914 - Tigger1 DNA MER2_type 0 2418 2275 12259 149 44 30 chr5 36881142 36882392 -166203140 - Tigger1 DNA MER2_type -139 2279 983 2158 133 16 34 chr5 36882392 36882774 -166202758 + THE1C LTR MaLR 1 375 0 12259 149 44 30 chr5 36882774 36883771 -166201761 - Tigger1 DNA MER2_type -1435 983 1 2378 182 25 6 chr5 36885233 36885721 -166199811 - L1MB3 LINE L1 -2 6181 5685 1466 253 184 8 chr5 36886796 36887318 -166198214 - MER90 LTR ERV1 0 614 1 2252 80 0 3 chr5 36888007 36888309 -166197223 - L1PA13 LINE L1 -4 6159 5859 716 256 0 0 chr5 36888707 36888863 -166196669 + MER6B DNA MER2_type 1 156 -54 364 348 118 25 chr5 36889627 36889788 -166195744 + L2 LINE L2 223 398 -2916 452 296 135 32 chr5 36890170 36890643 -166194889 + L1M4 LINE L1 4166 4687 -1459 33 43 0 0 chr5 36890673 36890720 -166194812 + AT_rich Low_complexity Low_complexity 1 47 0 388 358 5 27 chr5 36890948 36891135 -166194397 - MIR SINE MIR -50 212 30 288 0 0 0 chr5 36891254 36891286 -166194246 + (CA)n Simple_repeat Simple_repeat 2 33 0 206 324 57 75 chr5 36891340 36891658 -166193874 - L2 LINE L2 -1008 2306 1995 899 255 37 69 chr5 36891678 36892055 -166193477 + MLT1A1 LTR MaLR 1 365 0 2361 83 0 13 chr5 36892067 36892379 -166193153 - AluY SINE Alu -3 308 1 676 211 57 14 chr5 36892470 36892676 -166192856 - L1PA16 LINE L1 -1 6162 5928 2382 185 7 16 chr5 36893077 36893509 -166192023 - MER44D DNA MER2_type 0 605 123 5787 74 2 26 chr5 36893864 36894663 -166190869 - LTR17 LTR ERV1 0 780 1 225 365 47 0 chr5 36895697 36895782 -166189750 - L2 LINE L2 -9 3263 3175 2523 200 73 38 chr5 36896024 36896075 -166189457 + MER67C LTR ERV1 9 57 -653 1673 147 3 69 chr5 36896075 36896171 -166189361 + AluSx SINE Alu 1 102 -210 1957 119 46 13 chr5 36896171 36896474 -166189058 + AluSp SINE Alu 1 313 0 1673 147 3 69 chr5 36896474 36896711 -166188821 + AluSx SINE Alu 102 312 0 2523 200 73 38 chr5 36896711 36897289 -166188243 + MER67C LTR ERV1 57 660 -50 2050 138 6 6 chr5 36897362 36897674 -166187858 - AluSx SINE Alu 0 312 1 2266 87 0 7 chr5 36898355 36898653 -166186879 - AluSc SINE Alu -13 296 1 250 292 34 34 chr5 36898760 36898849 -166186683 + L2 LINE L2 2211 2299 -1015 1780 168 0 30 chr5 36900029 36900327 -166185205 - AluJo SINE Alu -23 289 1 250 238 20 48 chr5 36900343 36900490 -166185042 + (CATATA)n Simple_repeat Simple_repeat 4 146 0 440 309 52 60 chr5 36901068 36901434 -166184098 - L2 LINE L2 0 3313 2951 2942 151 32 2 chr5 36902486 36902988 -166182544 - Tigger3(Golem) DNA MER2_type 0 3029 2513 26 0 0 0 chr5 36902995 36903021 -166182511 + AT_rich Low_complexity Low_complexity 1 26 0 * 462 208 208 0 chr5 36903015 36903140 -166182392 - L1MA5A LINE L1 -20 6277 6127 774 299 0 0 chr5 36903157 36903358 -166182174 - HERV17 LTR ERV1 -1067 7559 7359 10916 233 18 21 chr5 36903366 36905723 -166179809 - HERV17 LTR ERV1 -4897 3729 789 1531 111 5 0 chr5 36905723 36905930 -166179602 - AluY SINE Alu -19 292 85 10916 233 18 21 chr5 36905930 36906717 -166178815 - HERV17 LTR ERV1 -7837 789 1 711 206 9 93 chr5 36906742 36906999 -166178533 - LTR12 LTR ERV1 -98 682 238 39615 83 9 0 chr5 36907269 36912423 -166173109 + HERVL LTR ERVL 2 5198 -456 23 78 0 0 chr5 36912467 36912518 -166173014 + AT_rich Low_complexity Low_complexity 1 51 0 4405 164 40 4 chr5 36914625 36915422 -166170110 - LTR1B LTR ERV1 0 826 1 23 33 0 0 chr5 36916821 36916851 -166168681 + AT_rich Low_complexity Low_complexity 1 30 0 342 312 26 7 chr5 36917061 36917215 -166168317 + (TATATG)n Simple_repeat Simple_repeat 4 160 0 281 199 29 29 chr5 36917221 36917357 -166168175 + (CATATA)n Simple_repeat Simple_repeat 5 140 0 24 67 0 0 chr5 36917954 36917999 -166167533 + AT_rich Low_complexity Low_complexity 1 45 0 2203 131 33 28 chr5 36918098 36918488 -166167044 - Tigger2 DNA MER2_type -48 2670 2279 297 237 0 0 chr5 36918494 36918553 -166166979 + MER8 DNA MER2_type 181 239 0 22 70 0 0 chr5 36918999 36919042 -166166490 + AT_rich Low_complexity Low_complexity 1 43 0 1824 184 46 57 chr5 36919296 36919571 -166165961 + Tigger2a DNA MER2_type 1 271 -2437 459 0 0 0 chr5 36919571 36919622 -166165910 + (TA)n Simple_repeat Simple_repeat 2 52 0 1824 184 46 57 chr5 36919622 36919785 -166165747 + Tigger2a DNA MER2_type 271 434 0 267 173 0 0 chr5 36919914 36919966 -166165566 + (TG)n Simple_repeat Simple_repeat 1 52 0 1826 161 5 63 chr5 36920814 36921212 -166164320 + THE1C LTR MaLR 1 375 0 370 273 105 0 chr5 36921673 36921816 -166163716 - MIR SINE MIR -8 254 97 * 1001 304 105 76 chr5 36921813 36922735 -166162797 + L2 LINE L2 1820 2768 -546 21 36 0 0 chr5 36922789 36922817 -166162715 + AT_rich Low_complexity Low_complexity 1 28 0 381 134 60 0 chr5 36923137 36923286 -166162246 + (TA)n Simple_repeat Simple_repeat 2 159 0 211 176 69 0 chr5 36923300 36923459 -166162073 + (TA)n Simple_repeat Simple_repeat 2 171 0 26 0 0 0 chr5 36923468 36923494 -166162038 + AT_rich Low_complexity Low_complexity 1 26 0 311 119 71 12 chr5 36923494 36923662 -166161870 + (TA)n Simple_repeat Simple_repeat 2 179 0 260 296 148 0 chr5 36924164 36924272 -166161260 + MIR SINE MIR 89 212 -50 2848 16 0 0 chr5 36925637 36925955 -166159577 + AluYb8 SINE Alu 1 318 0 268 347 142 40 chr5 36926636 36927262 -166158270 - L2 LINE L2 -851 2463 1774 1757 167 0 34 chr5 36927263 36927586 -166157946 + AluJo SINE Alu 1 312 0 442 300 136 54 chr5 36928382 36928809 -166156723 - HAL1 LINE L1 -413 2094 1633 459 0 0 0 chr5 36928878 36928929 -166156603 + (TG)n Simple_repeat Simple_repeat 1 51 0 562 282 101 32 chr5 36928929 36929206 -166156326 - L1M4 LINE L1 -1289 4857 4562 290 274 54 65 chr5 36929261 36929429 -166156103 + MLT1E2-int LTR MaLR 1023 1188 -183 22 56 0 0 chr5 36929841 36929877 -166155655 + AT_rich Low_complexity Low_complexity 1 36 0 2426 159 31 5 chr5 36929918 36930339 -166155193 - MSTB1 LTR MaLR 0 432 1 226 329 29 0 chr5 36931937 36932007 -166153525 + L2 LINE L2 3194 3265 -7 183 289 0 0 chr5 36932033 36932085 -166153447 - MIR SINE MIR -126 136 85 844 259 200 77 chr5 36932666 36933222 -166152310 + MLT1E2 LTR MaLR 1 624 0 22 56 0 0 chr5 36933720 36933756 -166151776 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr5 36934951 36934980 -166150552 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr5 36935476 36935511 -166150021 + AT_rich Low_complexity Low_complexity 1 35 0 184 383 93 19 chr5 36935512 36935726 -166149806 + L2 LINE L2 2375 2604 -710 1330 210 31 11 chr5 36935838 36936124 -166149408 + AluJo SINE Alu 9 300 -12 1730 235 3 6 chr5 36936207 36936573 -166148959 - MLT1A1 LTR MaLR 0 365 1 1633 195 3 3 chr5 36937215 36937507 -166148025 - AluJb SINE Alu -20 292 1 33 25 0 0 chr5 36938365 36938405 -166147127 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr5 36938625 36938646 -166146886 + AT_rich Low_complexity Low_complexity 1 21 0 311 371 35 0 chr5 36939425 36939595 -166145937 - MIR SINE MIR -38 224 49 22 56 0 0 chr5 36939741 36939777 -166145755 + AT_rich Low_complexity Low_complexity 1 36 0 1298 198 16 95 chr5 36940047 36940477 -166145055 - MSTD LTR MaLR 0 396 1 30 59 0 0 chr5 36941049 36941100 -166144432 + AT_rich Low_complexity Low_complexity 1 51 0 391 314 61 53 chr5 36941224 36941390 -166144142 - L1 LINE L1 -1602 4544 4381 2001 145 7 0 chr5 36941390 36941694 -166143838 - AluSx SINE Alu -6 306 1 391 314 61 53 chr5 36941694 36941960 -166143572 - L1 LINE L1 -1765 4381 4111 2568 128 11 30 chr5 36943077 36943513 -166142019 - LTR22A LTR ERVK -30 428 1 8650 109 2 1 chr5 36943513 36945845 -166139687 - HERVK22 LTR ERVK 0 6837 2248 4869 157 1 7 chr5 36945837 36946608 -166138924 - HERVK22 LTR ERVK -5856 981 215 * 750 70 0 0 chr5 36946611 36946711 -166138821 - AluY SINE Alu -211 100 1 211 167 0 33 chr5 36947115 36947175 -166138357 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 238 339 32 38 chr5 36947175 36947488 -166138044 + HAL1 LINE L1 1341 1651 -856 203 204 19 0 chr5 36948032 36948086 -166137446 + (TA)n Simple_repeat Simple_repeat 1 55 0 286 145 14 14 chr5 36948108 36948177 -166137355 + (TA)n Simple_repeat Simple_repeat 1 69 0 21 0 0 0 chr5 36948665 36948686 -166136846 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr5 36949451 36949489 -166136043 + AT_rich Low_complexity Low_complexity 1 38 0 274 57 0 0 chr5 36950137 36950172 -166135360 + MLT1C LTR MaLR 23 57 -410 210 302 216 22 chr5 36950317 36950539 -166134993 + L3 LINE CR1 946 1210 -367 1112 171 39 73 chr5 36952700 36952934 -166132598 - AluJo SINE Alu -66 246 21 2101 134 14 38 chr5 36952934 36953299 -166132233 + LTR18A LTR ERVL 2 357 0 2017 185 36 32 chr5 36953335 36953773 -166131759 + HERVL18 LTR ERVL 95 534 -5513 * 2064 193 12 13 chr5 36953742 36954341 -166131191 + HERVL18 LTR ERVL 1149 1810 -4237 1261 153 65 2 chr5 36954340 36954598 -166130934 + HERVL18 LTR ERVL 2119 2450 -3597 * 2080 203 3 3 chr5 36954599 36954968 -166130564 + HERVL18 LTR ERVL 2720 3088 -2959 1283 153 0 0 chr5 36954964 36955147 -166130385 + HERVL18 LTR ERVL 2952 3134 -2913 * 201 236 0 18 chr5 36955503 36955558 -166129974 + GA-rich Low_complexity Low_complexity 1 54 0 * 209 167 42 21 chr5 36955521 36955569 -166129963 + (CAGAGA)n Simple_repeat Simple_repeat 2 50 0 1210 243 48 88 chr5 36955695 36956221 -166129311 - MLT1D LTR MaLR 0 505 1 1899 269 38 28 chr5 36956577 36957316 -166128216 - L1MEc LINE L1 -2109 4106 3361 809 306 37 16 chr5 36957329 36957763 -166127769 - L1MEc LINE L1 -3459 2756 2314 797 238 32 61 chr5 36957859 36958289 -166127243 - LTR40b LTR ERVL -40 422 32 2139 293 61 36 chr5 36958304 36958619 -166126913 - L1MEc LINE L1 -4056 2340 2034 3757 111 88 2 chr5 36958619 36959212 -166126320 - LTR9B LTR ERV1 0 644 1 2139 293 61 36 chr5 36959212 36960416 -166125116 - L1MEc LINE L1 -4362 2034 783 2428 133 79 11 chr5 36960436 36960734 -166124798 + LTR21A LTR ERV1 1 340 -165 5881 58 13 14 chr5 36960734 36961515 -166124017 + LTR17 LTR ERV1 1 780 0 2428 133 79 11 chr5 36961515 36961659 -166123873 + LTR21A LTR ERV1 340 473 -32 270 116 0 0 chr5 36961659 36961702 -166123830 + (TC)n Simple_repeat Simple_repeat 2 44 0 749 306 11 22 chr5 36961718 36961993 -166123539 - L1MEc LINE L1 -5640 756 485 600 150 0 10 chr5 36961997 36962097 -166123435 + MER4A LTR ERV1 1 99 -565 1677 130 160 88 chr5 36962097 36962473 -166123059 + MER4A LTR ERV1 262 664 0 988 301 54 20 chr5 36962473 36962878 -166122654 - L1MEc LINE L1 -5913 483 65 37 99 0 0 chr5 36963469 36963590 -166121942 + AT_rich Low_complexity Low_complexity 1 121 0 22 0 0 0 chr5 36963929 36963951 -166121581 + AT_rich Low_complexity Low_complexity 1 22 0 425 314 6 6 chr5 36964183 36964352 -166121180 + GA-rich Low_complexity Low_complexity 3 171 0 24 32 0 0 chr5 36965439 36965470 -166120062 + AT_rich Low_complexity Low_complexity 1 31 0 516 16 0 0 chr5 36965532 36965593 -166119939 + (CA)n Simple_repeat Simple_repeat 2 62 0 196 369 41 33 chr5 36965596 36965718 -166119814 + MIR SINE MIR 20 142 -120 345 327 92 24 chr5 36966522 36966858 -166118674 - L1M4 LINE L1 -770 5376 5018 1884 164 16 0 chr5 36967819 36968124 -166117408 - AluSx SINE Alu -2 310 1 3396 149 27 2 chr5 36968295 36968879 -166116653 + LTR43 LTR ERV1 1 599 -3 273 268 31 21 chr5 36970180 36970277 -166115255 - MLT1L LTR MaLR -5 610 513 399 309 76 50 chr5 36970417 36970718 -166114814 - MLT1L LTR MaLR -295 320 12 21 0 0 0 chr5 36970976 36970997 -166114535 + AT_rich Low_complexity Low_complexity 1 21 0 2279 95 14 0 chr5 36971678 36971974 -166113558 - AluSp SINE Alu -13 300 1 22 35 0 0 chr5 36972907 36972936 -166112596 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr5 36973115 36973143 -166112389 + AT_rich Low_complexity Low_complexity 1 28 0 43 0 0 0 chr5 36973237 36973280 -166112252 + AT_rich Low_complexity Low_complexity 1 43 0 346 234 112 46 chr5 36973742 36973939 -166111593 - L1ME LINE L1 -385 5736 5527 307 258 39 55 chr5 36974486 36974614 -166110918 - MLT1L LTR MaLR -326 289 164 2277 146 5 19 chr5 36974787 36975156 -166110376 - THE1B LTR MaLR 0 364 1 10915 97 2 66 chr5 36975156 36976844 -166108688 - THE1B-int LTR MaLR 0 1580 1 2067 169 8 19 chr5 36976844 36977210 -166108322 - THE1B LTR MaLR 0 364 3 848 280 46 61 chr5 36977212 36977755 -166107777 - L1ME LINE L1 -1998 4148 3614 240 277 12 60 chr5 36978177 36978260 -166107272 - MIR SINE MIR -116 146 68 265 97 0 139 chr5 36979176 36979248 -166106284 - L1MC3 LINE L1 -8 7777 7716 2037 162 64 20 chr5 36980052 36980459 -166105073 - MSTB LTR MaLR -1 425 1 32 26 0 0 chr5 36980579 36980618 -166104914 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr5 36981995 36982020 -166103512 + AT_rich Low_complexity Low_complexity 1 25 0 2479 80 0 0 chr5 36983817 36984128 -166101404 - AluY SINE Alu 0 311 1 1393 260 87 31 chr5 36984459 36984539 -166100993 + L1MC4 LINE L1 5291 5365 -2677 1684 184 0 0 chr5 36984539 36984832 -166100700 + AluJb SINE Alu 7 299 -13 1393 260 87 31 chr5 36984832 36985443 -166100089 + L1MC4 LINE L1 5365 6017 -2025 280 221 47 47 chr5 36985474 36985560 -166099972 + MER58B DNA MER1_type 226 311 -30 1980 141 13 49 chr5 36985561 36985950 -166099582 - THE1C LTR MaLR 0 375 1 1705 190 7 0 chr5 36986034 36986344 -166099188 - AluSx SINE Alu 0 312 1 787 131 8 0 chr5 36986350 36986480 -166099052 - L1PA15 LINE L1 -3 6162 6032 897 81 0 59 chr5 36986480 36986616 -166098916 + L1P4 LINE L1 5616 5743 -422 222 304 0 13 chr5 36986709 36986788 -166098744 + CT-rich Low_complexity Low_complexity 1 78 0 206 273 39 0 chr5 36986748 36986825 -166098707 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 * 21 0 0 0 chr5 36986986 36987007 -166098525 + AT_rich Low_complexity Low_complexity 1 21 0 270 365 18 55 chr5 36987105 36987324 -166098208 + MIR SINE MIR 20 230 -32 264 242 57 105 chr5 36988148 36988272 -166097260 - LTR67 LTR ERVL -8 549 432 245 269 39 0 chr5 36988622 36988700 -166096832 + Charlie8 DNA MER1_type 57 137 -2280 9460 111 13 2 chr5 36988866 36990205 -166095327 + THE1B-int LTR MaLR 227 1580 0 2084 150 27 35 chr5 36990205 36990572 -166094960 + THE1B LTR MaLR 1 364 0 272 167 14 0 chr5 36990818 36990890 -166094642 + (TA)n Simple_repeat Simple_repeat 2 74 0 335 253 20 61 chr5 36990890 36990989 -166094543 + L1MC4 LINE L1 6613 6707 -1335 29 28 0 0 chr5 36991712 36991748 -166093784 + AT_rich Low_complexity Low_complexity 1 36 0 22 88 0 0 chr5 36991891 36991948 -166093584 + AT_rich Low_complexity Low_complexity 1 57 0 201 184 69 11 chr5 36993040 36993127 -166092405 + (TA)n Simple_repeat Simple_repeat 2 93 0 5456 158 26 23 chr5 36994406 36994740 -166090792 - L1MA5A LINE L1 -1 6296 5964 1950 141 10 0 chr5 36994740 36995030 -166090502 - AluSx SINE Alu -19 293 1 5456 158 26 23 chr5 36995030 36995793 -166089739 - L1MA5A LINE L1 -333 5964 5195 1106 239 100 48 chr5 36995806 36996245 -166089287 + MLT1C LTR MaLR 1 462 -5 403 283 72 30 chr5 36996740 36996906 -166088626 - MER93a LTR ERV1 -229 173 1 271 236 25 0 chr5 36996998 36997164 -166088368 + CT-rich Low_complexity Low_complexity 1 170 0 2096 113 3 0 chr5 36997414 36997738 -166087794 - AluSp SINE Alu 0 325 1 21 0 0 0 chr5 37000668 37000689 -166084843 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr5 37001871 37001906 -166083626 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr5 37001983 37002011 -166083521 + AT_rich Low_complexity Low_complexity 1 28 0 1576 251 57 42 chr5 37002354 37002896 -166082636 + MER44D DNA MER2_type 1 605 0 216 0 0 0 chr5 37002979 37003003 -166082529 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1370 23 0 23 chr5 37003036 37003230 -166082302 - L1PA2 LINE L1 0 6155 5988 384 280 0 0 chr5 37004593 37004686 -166080846 + U13 snRNA snRNA 12 104 0 230 216 0 0 chr5 37004752 37004803 -166080729 + L1MC4 LINE L1 6652 6702 -1340 * 287 250 57 0 chr5 37004769 37004857 -166080675 - L1MC4 LINE L1 -1340 6702 6610 1619 224 18 3 chr5 37005148 37005474 -166080058 + MLT1A1 LTR MaLR 34 364 -1 326 227 18 45 chr5 37005474 37005580 -166079952 - LTR40c LTR ERVL -211 254 152 347 138 17 0 chr5 37005713 37005771 -166079761 - LTR40a LTR ERVL -377 142 84 281 259 63 42 chr5 37006195 37006338 -166079194 - LTR33A LTR ERVL 0 523 378 368 262 170 44 chr5 37006532 37006738 -166078794 - LTR50 LTR ERVL -545 250 19 2090 124 28 31 chr5 37007343 37007699 -166077833 - THE1A LTR MaLR 0 355 1 10786 113 14 1 chr5 37007699 37009258 -166076274 - THE1A-int LTR MaLR 0 1580 1 1907 140 16 44 chr5 37009258 37009623 -166075909 - THE1A LTR MaLR 0 355 1 266 319 0 0 chr5 37010598 37010670 -166074862 + MER5A DNA MER1_type 9 80 -109 1839 194 44 47 chr5 37010826 37011299 -166074233 + MER41B LTR ERV1 131 602 -33 489 301 39 82 chr5 37011819 37012443 -166073089 + HAL1b LINE L1 13 609 -739 878 267 80 37 chr5 37012760 37013086 -166072446 + MER93a LTR ERV1 63 402 0 1203 259 7 31 chr5 37013125 37013418 -166072114 + AluJb SINE Alu 1 286 -16 368 262 68 91 chr5 37013437 37013864 -166071668 + HAL1b LINE L1 932 1348 0 28 29 0 0 chr5 37014468 37014503 -166071029 + AT_rich Low_complexity Low_complexity 1 35 0 761 114 0 0 chr5 37014649 37014763 -166070769 + AluSg/x SINE Alu 189 302 -10 25 83 0 0 chr5 37015138 37015198 -166070334 + AT_rich Low_complexity Low_complexity 1 60 0 211 214 24 0 chr5 37015331 37015373 -166070159 + CT-rich Low_complexity Low_complexity 2 44 0 29 0 0 0 chr5 37015609 37015638 -166069894 + AT_rich Low_complexity Low_complexity 1 29 0 2033 144 39 28 chr5 37015796 37016156 -166069376 + THE1B LTR MaLR 1 364 0 5684 128 171 61 chr5 37016156 37016634 -166068898 + THE1B-int LTR MaLR 1 425 -1155 2217 72 7 7 chr5 37016634 37016924 -166068608 - AluY SINE Alu -6 305 16 5684 128 171 61 chr5 37016924 37017578 -166067954 + THE1B-int LTR MaLR 425 1258 -322 1797 224 78 23 chr5 37017772 37018206 -166067326 + MER70A LTR ERVL 1 458 -14 2062 132 7 0 chr5 37018482 37018778 -166066754 + AluSx SINE Alu 1 298 -14 29 0 8 0 chr5 37019489 37019560 -166065972 + AT_rich Low_complexity Low_complexity 1 29 0 3848 246 59 77 chr5 37021259 37021499 -166064033 + L1M4 LINE L1 16 259 -6283 2168 87 0 13 chr5 37021499 37021631 -166063901 + AluY SINE Alu 1 133 -178 216 0 0 0 chr5 37021631 37021655 -166063877 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2168 87 0 13 chr5 37021655 37021822 -166063710 + AluY SINE Alu 133 296 -15 3848 246 59 77 chr5 37021822 37022641 -166062891 + L1M4 LINE L1 259 1035 -5507 458 110 0 14 chr5 37022641 37022714 -166062818 - MADE1 DNA Mariner -4 76 5 3848 246 59 77 chr5 37022714 37023342 -166062190 + L1M4 LINE L1 1035 1673 -4869 29 28 0 0 chr5 37025539 37025575 -166059957 + AT_rich Low_complexity Low_complexity 1 36 0 272 272 54 22 chr5 37025575 37025667 -166059865 + MIR SINE MIR 168 262 0 1101 225 9 0 chr5 37026282 37026504 -166059028 - AluJo SINE Alu -2 310 87 204 222 0 0 chr5 37027600 37027636 -166057896 + polypurine Low_complexity Low_complexity 5 40 0 23 0 0 0 chr5 37029234 37029257 -166056275 + AT_rich Low_complexity Low_complexity 1 23 0 617 248 0 0 chr5 37031245 37031378 -166054154 + FLAM_A SINE Alu 1 133 0 29 70 0 0 chr5 37032840 37032897 -166052635 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr5 37032940 37032962 -166052570 + AT_rich Low_complexity Low_complexity 1 22 0 2588 175 34 1 chr5 37033089 37033707 -166051825 + L1P4 LINE L1 4821 5455 -710 1168 287 65 81 chr5 37033942 37034816 -166050716 + MER89-int LTR ERV1 147 1006 -5795 2123 107 0 49 chr5 37035232 37035558 -166049974 + AluSx SINE Alu 1 310 -2 196 349 115 65 chr5 37035799 37036243 -166049289 - L2 LINE L2 -1122 2192 1727 2126 103 0 4 chr5 37036248 37036561 -166048971 + AluSc SINE Alu 1 312 0 894 232 172 22 chr5 37037002 37037452 -166048080 - L1ME2 LINE L1 -100 6064 5457 27 49 0 0 chr5 37037673 37037714 -166047818 + AT_rich Low_complexity Low_complexity 1 41 0 920 286 94 23 chr5 37037717 37038323 -166047209 - L1ME2 LINE L1 -1043 5103 4455 215 149 92 11 chr5 37038423 37038510 -166047022 + (TA)n Simple_repeat Simple_repeat 1 94 0 21 36 0 0 chr5 37039059 37039087 -166046445 + AT_rich Low_complexity Low_complexity 1 28 0 308 198 0 23 chr5 37039314 37039400 -166046132 + (TATG)n Simple_repeat Simple_repeat 4 87 0 186 191 0 0 chr5 37039418 37039460 -166046072 + (CA)n Simple_repeat Simple_repeat 1 42 0 1585 177 10 11 chr5 37039550 37040006 -166045526 + L1M2 LINE L1 5083 5536 -744 711 150 29 14 chr5 37040111 37040251 -166045281 + L1M2 LINE L1 5535 5676 -621 * 1064 136 23 0 chr5 37040246 37040423 -166045109 + L1M2 LINE L1 5553 5733 -564 27 29 0 0 chr5 37041113 37041147 -166044385 + AT_rich Low_complexity Low_complexity 1 34 0 1965 109 26 22 chr5 37041183 37041495 -166044037 - AluSp SINE Alu 0 313 1 679 290 16 57 chr5 37042307 37042552 -166042980 + MIR SINE MIR 20 254 -8 1088 296 83 8 chr5 37044049 37044411 -166041121 - MLT1H LTR MaLR -4 545 157 34 55 0 0 chr5 37044525 37044580 -166040952 + AT_rich Low_complexity Low_complexity 1 55 0 1952 114 3 3 chr5 37044602 37044900 -166040632 - L1PB1 LINE L1 -4 6147 5850 485 44 17 0 chr5 37044901 37044976 -166040556 + L1MC/D LINE L1 5371 5451 -719 1497 168 59 3 chr5 37045040 37045344 -166040188 + L1MC1 LINE L1 6011 6331 -2 1335 250 140 29 chr5 37045441 37046056 -166039476 - L1ME1 LINE L1 -229 6006 5324 683 231 87 108 chr5 37047785 37048301 -166037231 - L1ME1 LINE L1 -893 5322 4818 1570 163 71 52 chr5 37048333 37048701 -166036831 - THE1C LTR MaLR 0 375 1 8638 132 52 35 chr5 37048701 37050255 -166035277 - THE1C-int LTR MaLR 0 1580 2 1019 170 41 32 chr5 37050256 37050474 -166035058 - THE1C LTR MaLR 0 375 156 4112 131 11 0 chr5 37050476 37051116 -166034416 - L1PA8A LINE L1 -1949 4197 3551 6751 151 33 5 chr5 37051116 37053015 -166032517 + L1PA8A LINE L1 4197 6128 -3 861 138 127 14 chr5 37053017 37053189 -166032343 - THE1C LTR MaLR -164 191 1 489 263 141 5 chr5 37053189 37053402 -166032130 - L1ME1 LINE L1 -1430 4785 4544 536 288 68 0 chr5 37053422 37053599 -166031933 - L1ME1 LINE L1 -6093 303 115 428 316 84 60 chr5 37054961 37055446 -166030086 + HAL1 LINE L1 956 1452 -1055 455 313 61 49 chr5 37055749 37056001 -166029531 + MLT1G1 LTR MaLR 1 240 -309 961 169 57 0 chr5 37157640 37157817 -165927715 - MSTA LTR MaLR 0 428 242 1577 127 0 0 chr5 37158037 37158257 -165927275 + AluSx SINE Alu 35 254 -58 1388 187 20 12 chr5 37158598 37158849 -165926683 - MSTA LTR MaLR -175 253 1 6298 221 39 32 chr5 37159571 37161300 -165924232 + L1P LINE L1 2375 4114 -2032 236 98 49 0 chr5 37161403 37161444 -165924088 - Alu SINE Alu -257 45 3 2040 121 0 0 chr5 37161465 37161755 -165923777 + AluSq SINE Alu 4 293 -20 22 0 0 0 chr5 37161755 37161777 -165923755 + AT_rich Low_complexity Low_complexity 1 22 0 398 277 9 27 chr5 37163035 37163147 -165922385 - L2 LINE L2 -2 3311 3202 1312 200 22 82 chr5 37163293 37163708 -165921824 - MLT1B LTR MaLR 0 390 1 4850 151 32 62 chr5 37163850 37164669 -165920863 - L1PA15 LINE L1 -6 6159 5317 3587 60 6 0 chr5 37164669 37165136 -165920396 + L1PA7 LINE L1 5683 6152 -2 4850 151 32 62 chr5 37165136 37165489 -165920043 - L1PA15 LINE L1 -848 5317 5005 1835 83 4 29 chr5 37165489 37165766 -165919766 - L1PA13 LINE L1 -3 6160 5891 4850 151 32 62 chr5 37165766 37165866 -165919666 - L1PA15 LINE L1 -1160 5005 4904 5599 120 8 27 chr5 37166080 37167454 -165918078 + L1PA11 LINE L1 4432 5773 -401 4628 127 3 9 chr5 37167454 37168149 -165917383 + LTR8 LTR ERV1 1 691 0 5599 120 8 27 chr5 37168149 37168544 -165916988 + L1PA11 LINE L1 5773 6174 0 2720 3 0 3 chr5 37168686 37168987 -165916545 - AluYa5 SINE Alu -11 300 1 1576 136 18 4 chr5 37169024 37169304 -165916228 + L1MA4 LINE L1 6013 6296 -4 372 270 42 42 chr5 37170003 37170192 -165915340 + MER112 DNA MER1_type 67 255 -5 25 51 0 0 chr5 37170392 37170431 -165915101 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr5 37170696 37170721 -165914811 + AT_rich Low_complexity Low_complexity 1 25 0 1198 231 45 34 chr5 37171660 37172008 -165913524 - MLT1A1 LTR MaLR 0 467 11 266 0 29 0 chr5 37172684 37172718 -165912814 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1725 182 13 50 chr5 37173547 37173926 -165911606 + MLT1A1 LTR MaLR 1 365 0 1650 74 35 0 chr5 37174147 37174377 -165911155 - MER75B DNA T2_type -5 238 1 801 336 30 57 chr5 37174986 37175423 -165910109 + MLT1E LTR MaLR 22 446 -147 2727 148 97 28 chr5 37175444 37175983 -165909549 - L1PB4 LINE L1 0 6156 5581 2162 206 51 11 chr5 37175978 37176440 -165909092 + L1 LINE L1 4281 4770 -1376 * 207 88 0 0 chr5 37176440 37176474 -165909058 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 2162 206 51 11 chr5 37176474 37176559 -165908973 + L1 LINE L1 4770 4850 -1296 379 273 49 14 chr5 37176605 37176748 -165908784 + MLT1E LTR MaLR 446 593 0 426 56 0 0 chr5 37178852 37178906 -165906626 - THE1C LTR MaLR -321 54 1 2262 90 10 0 chr5 37179433 37179723 -165905809 - AluSg SINE Alu -17 293 1 256 277 10 10 chr5 37180422 37180523 -165905009 + (TG)n Simple_repeat Simple_repeat 2 102 0 1041 64 57 0 chr5 37180813 37180953 -165904579 + AluY SINE Alu 158 305 -6 294 353 43 7 chr5 37180954 37181093 -165904439 + MIR SINE MIR 6 149 -113 1647 132 24 28 chr5 37181096 37181384 -165904148 - MER44D DNA MER2_type 0 609 53 1128 128 12 0 chr5 37181384 37181556 -165903976 + AluSg/x SINE Alu 127 300 -12 27 49 0 0 chr5 37182192 37182233 -165903299 + AT_rich Low_complexity Low_complexity 1 41 0 3990 182 11 4 chr5 37182572 37183277 -165902255 + MER50 LTR ERV1 1 710 -24 667 250 28 11 chr5 37183987 37184167 -165901365 - MER4C LTR ERV1 0 465 283 410 196 11 22 chr5 37184201 37184293 -165901239 - LTR34 LTR ERV1 -180 519 429 452 223 27 18 chr5 37184382 37184494 -165901038 - MER4C LTR ERV1 -352 113 1 30 59 0 0 chr5 37184588 37184639 -165900893 + AT_rich Low_complexity Low_complexity 1 51 0 237 221 15 0 chr5 37184855 37184923 -165900609 - L1M4 LINE L1 -2887 3259 3191 3552 133 27 2 chr5 37184928 37185483 -165900049 + MER61E LTR ERV1 1 569 0 181 136 23 23 chr5 37185496 37185540 -165899992 + CT-rich Low_complexity Low_complexity 1 44 0 357 274 122 57 chr5 37185542 37185772 -165899760 - L1M4 LINE L1 -2973 3173 2929 22 56 0 0 chr5 37185800 37185836 -165899696 + AT_rich Low_complexity Low_complexity 1 36 0 1205 303 52 32 chr5 37186444 37186945 -165898587 - LTR40a LTR ERVL -8 511 1 215 348 191 15 chr5 37188407 37188611 -165896921 + L3 LINE CR1 1245 1484 -93 536 256 36 0 chr5 37189369 37189506 -165896026 - MLT1F1 LTR MaLR 0 567 426 2007 167 20 41 chr5 37189531 37189921 -165895611 - MSTB LTR MaLR 0 426 45 535 272 8 62 chr5 37190091 37190345 -165895187 - MLT1E LTR MaLR -327 240 1 184 418 20 0 chr5 37191168 37191266 -165894266 - MIR SINE MIR -115 147 48 194 373 107 40 chr5 37192179 37192329 -165893203 - MIR SINE MIR -41 221 62 407 356 77 49 chr5 37193179 37193712 -165891820 + L2 LINE L2 1700 2247 -1067 21 0 0 0 chr5 37194153 37194174 -165891358 + AT_rich Low_complexity Low_complexity 1 21 0 1177 225 51 18 chr5 37194502 37194835 -165890697 + MER2 DNA MER2_type 1 344 0 1688 259 75 47 chr5 37195174 37196137 -165889395 - L1M4 LINE L1 -1455 4691 3702 28 0 0 0 chr5 37196582 37196610 -165888922 + AT_rich Low_complexity Low_complexity 1 28 0 633 192 354 28 chr5 37196613 37196776 -165888756 - MLT1A2 LTR MaLR 0 428 319 2058 90 40 13 chr5 37196776 37197076 -165888456 + AluSq SINE Alu 1 308 -5 633 192 354 28 chr5 37197076 37197193 -165888339 - MLT1A2 LTR MaLR -109 319 1 59 75 0 7 chr5 37197708 37197809 -165887723 + AT_rich Low_complexity Low_complexity 1 102 -44 1672 137 0 8 chr5 37197809 37198065 -165887467 - AluSx SINE Alu -24 288 35 59 75 0 7 chr5 37198065 37198110 -165887422 + AT_rich Low_complexity Low_complexity 102 146 0 895 119 0 0 chr5 37198469 37198603 -165886929 - L1PA16 LINE L1 0 6166 6033 2128 132 16 0 chr5 37198685 37198989 -165886543 + AluSg1 SINE Alu 1 309 0 22 35 0 0 chr5 37199382 37199411 -165886121 + AT_rich Low_complexity Low_complexity 1 29 0 200 221 0 15 chr5 37199899 37199967 -165885565 + GA-rich Low_complexity Low_complexity 2 68 0 357 298 42 59 chr5 37200433 37200671 -165884861 - MLT1I LTR MaLR -22 387 154 429 171 26 0 chr5 37200678 37200754 -165884778 - MER2 DNA MER2_type -1 344 267 284 223 54 6 chr5 37200802 37200929 -165884603 - MER2 DNA MER2_type -140 205 1 261 346 55 0 chr5 37200934 37201061 -165884471 - MLT1I LTR MaLR -270 139 6 2279 58 7 0 chr5 37201412 37201689 -165883843 - AluY SINE Alu -9 302 24 611 224 166 27 chr5 37202171 37202394 -165883138 - MLT1D LTR MaLR 0 505 252 1295 242 11 55 chr5 37202394 37202774 -165882758 - MLT1B LTR MaLR 0 390 28 624 256 10 50 chr5 37202892 37203091 -165882441 - MLT1D LTR MaLR -314 191 1 186 341 68 11 chr5 37203544 37203632 -165881900 + L3b LINE CR1 1482 1574 -9 318 67 0 0 chr5 37203669 37203714 -165881818 + (TA)n Simple_repeat Simple_repeat 1 45 0 241 218 18 0 chr5 37204815 37204870 -165880662 + (TA)n Simple_repeat Simple_repeat 2 57 0 201 147 0 0 chr5 37205024 37205058 -165880474 + (T)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chr5 37205140 37205170 -165880362 + AT_rich Low_complexity Low_complexity 1 30 0 2007 147 0 6 chr5 37205275 37205589 -165879943 - AluSx SINE Alu 0 312 1 818 158 42 37 chr5 37205941 37206131 -165879401 + L1MA9 LINE L1 6093 6283 -29 1086 158 19 0 chr5 37206132 37206341 -165879191 - L1MA8 LINE L1 -5 6286 6074 270 314 0 0 chr5 37206986 37207072 -165878460 + MER63 DNA MER1_type 691 776 -285 953 266 125 68 chr5 37207172 37207676 -165877856 + MLT1H LTR MaLR 3 535 -14 234 105 0 0 chr5 37207778 37207816 -165877716 + (CA)n Simple_repeat Simple_repeat 1 38 0 2166 81 0 3 chr5 37208220 37208504 -165877028 + AluY SINE Alu 1 306 0 208 0 0 0 chr5 37208504 37208527 -165877005 + (TAAA)n Simple_repeat Simple_repeat 2 120 0 1096 211 104 47 chr5 37208670 37209073 -165876459 - LTR56 LTR ERV1 0 445 20 243 366 45 36 chr5 37209094 37209206 -165876326 - L2 LINE L2 -2 3270 3158 941 174 22 121 chr5 37209285 37209673 -165875859 + LTR37A LTR ERV1 1 426 0 375 328 70 5 chr5 37209794 37209980 -165875552 - MER67A LTR ERV1 0 543 346 285 338 108 79 chr5 37210284 37210878 -165874654 - L2 LINE L2 -349 2965 2355 294 91 0 0 chr5 37210979 37211023 -165874509 + L1P LINE L1 4424 4467 -1679 44 35 0 0 chr5 37211069 37211127 -165874405 + AT_rich Low_complexity Low_complexity 1 58 0 186 118 0 0 chr5 37212115 37212149 -165873383 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 242 318 61 61 chr5 37212263 37212411 -165873121 + L2 LINE L2 3159 3306 -7 285 255 0 43 chr5 37213191 37213285 -165872247 + L1MC4 LINE L1 6614 6703 -1339 261 250 0 0 chr5 37213285 37213361 -165872171 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 236 313 38 0 chr5 37213414 37213494 -165872038 - MIR SINE MIR -54 208 126 436 338 43 23 chr5 37213825 37214124 -165871408 + MLT1I LTR MaLR 97 401 -8 24 67 0 0 chr5 37214303 37214348 -165871184 + AT_rich Low_complexity Low_complexity 1 45 0 22 56 0 0 chr5 37214758 37214794 -165870738 + AT_rich Low_complexity Low_complexity 1 36 0 277 43 43 0 chr5 37218138 37218185 -165867347 + (CTATT)n Simple_repeat Simple_repeat 2 50 0 337 230 54 0 chr5 37218577 37218650 -165866882 + MER63 DNA MER1_type 27 729 -333 1235 226 130 31 chr5 37218650 37219066 -165866466 + MLT1C LTR MaLR 3 459 -8 419 244 7 7 chr5 37219066 37219182 -165866350 + MER63 DNA MER1_type 715 1055 -6 231 122 0 0 chr5 37219478 37219519 -165866013 - L1MA4A LINE L1 -7 6296 6256 186 71 0 0 chr5 37219818 37219846 -165865686 + (TA)n Simple_repeat Simple_repeat 1 28 0 352 358 130 12 chr5 37220043 37220373 -165865159 - L1ME LINE L1 -501 5663 5295 641 225 8 0 chr5 37221138 37221267 -165864265 - FLAM_A SINE Alu -3 130 1 29 0 0 0 chr5 37221269 37221298 -165864234 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr5 37221352 37221381 -165864151 + AT_rich Low_complexity Low_complexity 1 29 0 6306 34 0 0 chr5 37222301 37223048 -165862484 - L1PA4 LINE L1 -8 6147 5401 1944 117 0 18 chr5 37223130 37223412 -165862120 + AluSg SINE Alu 1 277 -33 1181 51 17 11 chr5 37223414 37223589 -165861943 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 22 56 0 0 chr5 37226035 37226071 -165859461 + AT_rich Low_complexity Low_complexity 1 36 0 681 322 98 42 chr5 37227114 37227322 -165858210 - LTR16C LTR ERVL -1 490 295 2255 140 89 8 chr5 37227322 37227716 -165857816 + MSTA LTR MaLR 3 428 0 681 322 98 42 chr5 37227716 37227886 -165857646 - LTR16C LTR ERVL -196 295 91 24 53 0 0 chr5 37228619 37228657 -165856875 + AT_rich Low_complexity Low_complexity 1 38 0 2145 110 3 0 chr5 37229031 37229332 -165856200 - AluSc SINE Alu -7 302 1 434 218 109 27 chr5 37230016 37230163 -165855369 + MLT1H LTR MaLR 1 159 -390 2274 78 10 3 chr5 37230405 37230714 -165854818 + AluY SINE Alu 1 311 0 2053 178 38 59 chr5 37230810 37231287 -165854245 - MLT1C LTR MaLR 0 467 1 414 211 92 0 chr5 37231297 37231406 -165854126 - MLT1H LTR MaLR -5 544 426 338 310 91 21 chr5 37231516 37231703 -165853829 + L2 LINE L2 3098 3297 -16 218 138 77 15 chr5 37231725 37231790 -165853742 + (TTAA)n Simple_repeat Simple_repeat 3 71 0 261 185 15 31 chr5 37234141 37234206 -165851326 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 22 0 0 0 chr5 37235278 37235300 -165850232 + AT_rich Low_complexity Low_complexity 1 22 0 675 205 0 0 chr5 37235684 37235811 -165849721 + FLAM_A SINE Alu 4 130 -3 218 96 0 96 chr5 37235814 37235866 -165849666 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1938 130 31 0 chr5 37236035 37236328 -165849204 + AluSx SINE Alu 1 302 -10 186 103 0 0 chr5 37236756 37236782 -165848750 + (CA)n Simple_repeat Simple_repeat 1 55 0 186 103 0 0 chr5 37236782 37236811 -165848721 + (CA)n Simple_repeat Simple_repeat 2 30 0 1769 209 58 78 chr5 37238412 37238806 -165846726 + MLT1D LTR MaLR 3 386 -119 1474 204 81 20 chr5 37238806 37239150 -165846382 - MLT1A1 LTR MaLR 0 365 1 1769 209 58 78 chr5 37239150 37239268 -165846264 + MLT1D LTR MaLR 386 505 0 1687 190 0 3 chr5 37239470 37239759 -165845773 + AluJb SINE Alu 3 290 -22 21 0 0 0 chr5 37240258 37240279 -165845253 + AT_rich Low_complexity Low_complexity 1 21 0 248 0 31 0 chr5 37240411 37240443 -165845089 + (TG)n Simple_repeat Simple_repeat 2 34 0 429 268 17 84 chr5 37240851 37241030 -165844502 + MLT1F LTR MaLR 4 170 -372 225 65 0 0 chr5 37241387 37241418 -165844114 + (TG)n Simple_repeat Simple_repeat 2 32 0 416 19 19 0 chr5 37242238 37242291 -165843241 + (TG)n Simple_repeat Simple_repeat 2 55 0 1995 181 33 44 chr5 37242292 37242846 -165842686 + MLT2A2 LTR ERVL 3 554 0 1776 32 9 0 chr5 37244943 37245163 -165840369 + L1PA4 LINE L1 5929 6150 -5 22 35 0 0 chr5 37245542 37245571 -165839961 + AT_rich Low_complexity Low_complexity 1 29 0 367 300 80 45 chr5 37247996 37248313 -165837219 + L1MC/D LINE L1 5283 5609 -512 41 93 0 0 chr5 37248325 37248443 -165837089 + AT_rich Low_complexity Low_complexity 1 118 0 232 302 10 10 chr5 37248459 37248555 -165836977 + L1MC/D LINE L1 5711 5806 -2002 2865 145 57 32 chr5 37248562 37249203 -165836329 + L1P5 LINE L1 5084 5780 -376 242 57 0 0 chr5 37249198 37249233 -165836299 - L1P4 LINE L1 -482 5686 5652 * 1378 124 0 0 chr5 37249244 37249445 -165836087 + L1PB4 LINE L1 5580 5780 -376 * 2354 77 3 6 chr5 37249440 37249637 -165835895 - L1P4 LINE L1 -477 5686 5489 2153 102 0 55 chr5 37249637 37249962 -165835570 - AluSg SINE Alu -3 307 1 2354 77 3 6 chr5 37249962 37250089 -165835443 - L1P4 LINE L1 -674 5489 5363 3273 96 4 18 chr5 37250089 37250576 -165834956 + L1PA13 LINE L1 5676 6157 -6 1788 199 0 37 chr5 37250585 37250622 -165834910 + L1PB4 LINE L1 5769 5806 -350 210 91 0 0 chr5 37250622 37250655 -165834877 + (CA)n Simple_repeat Simple_repeat 2 34 0 1788 199 0 37 chr5 37250655 37251019 -165834513 + L1PB4 LINE L1 5806 6155 -1 298 151 27 0 chr5 37252340 37252413 -165833119 + (TG)n Simple_repeat Simple_repeat 2 76 0 24 0 0 0 chr5 37252413 37252437 -165833095 + AT_rich Low_complexity Low_complexity 1 24 0 228 143 0 0 chr5 37252437 37252479 -165833053 + (CA)n Simple_repeat Simple_repeat 2 43 0 260 89 0 22 chr5 37253507 37253552 -165831980 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4746 56 0 0 chr5 37253899 37254488 -165831044 + L1PA7 LINE L1 5560 6148 -6 2007 135 3 26 chr5 37255464 37255768 -165829764 + AluSx SINE Alu 2 298 -14 208 221 26 13 chr5 37257637 37257714 -165827818 + (TA)n Simple_repeat Simple_repeat 1 78 0 435 194 23 11 chr5 37257734 37257909 -165827623 + (TA)n Simple_repeat Simple_repeat 2 178 0 1278 169 20 8 chr5 37258266 37258515 -165827017 - Tigger2a DNA MER2_type -2 432 181 962 169 5 51 chr5 37258567 37258762 -165826770 - Tigger2a DNA MER2_type -248 186 1 691 140 2 2 chr5 37259370 37259495 -165826037 - LTR38B LTR ERV1 -12 599 476 2282 154 0 5 chr5 37259495 37259871 -165825661 - LTR38B LTR ERV1 -236 374 1 333 305 67 79 chr5 37260815 37261221 -165824311 + MLT1J1 LTR MaLR 24 424 -22 180 111 0 0 chr5 37261608 37261635 -165823897 + (CA)n Simple_repeat Simple_repeat 2 28 0 383 283 69 25 chr5 37261778 37262054 -165823478 + L1M4 LINE L1 4116 4403 -1743 1781 199 5 28 chr5 37262374 37262771 -165822761 - L1PA16 LINE L1 0 6166 5779 1618 225 35 39 chr5 37262857 37263320 -165822212 - L1ME2 LINE L1 -8 6156 5696 1118 288 90 36 chr5 37263322 37264425 -165821107 + L1P4 LINE L1 4396 5562 -612 288 224 0 0 chr5 37264522 37264589 -165820943 + (TG)n Simple_repeat Simple_repeat 2 68 0 1021 321 54 6 chr5 37264589 37265090 -165820442 + L1ME3A LINE L1 5609 6133 -37 1036 278 48 68 chr5 37265476 37265885 -165819647 - LTR40a LTR ERVL -9 510 112 2382 62 0 37 chr5 37265885 37266207 -165819325 + AluY SINE Alu 1 310 -1 1036 278 48 68 chr5 37266207 37266315 -165819217 - LTR40a LTR ERVL -407 112 3 879 296 41 13 chr5 37266348 37266740 -165818792 + L1M4 LINE L1 3543 3945 -2201 548 248 291 21 chr5 37266747 37267315 -165818217 + Zaphod DNA AcHobo 297 1017 -3014 300 249 210 28 chr5 37267315 37267496 -165818036 + Zaphod DNA AcHobo 3818 4031 0 23 33 0 0 chr5 37267620 37267650 -165817882 + AT_rich Low_complexity Low_complexity 1 30 0 245 114 23 0 chr5 37267650 37267694 -165817838 - L1PB2 LINE L1 -2 6149 6105 2048 112 25 109 chr5 37267697 37268091 -165817441 + THE1B LTR MaLR 4 364 0 1035 177 57 104 chr5 37268108 37268424 -165817108 - AluJb SINE Alu 0 302 2 9225 196 20 61 chr5 37268441 37268742 -165816790 - L1PA16 LINE L1 -74 6808 6496 2034 123 3 10 chr5 37268742 37269051 -165816481 - AluSc SINE Alu -2 307 1 9225 196 20 61 chr5 37269051 37269102 -165816430 - L1PA16 LINE L1 -386 6496 6444 524 40 158 0 chr5 37269102 37269178 -165816354 - AluY SINE Alu -13 298 211 9225 196 20 61 chr5 37269178 37269872 -165815660 - L1PA16 LINE L1 -438 6444 5723 2096 126 0 0 chr5 37269872 37270166 -165815366 - AluSc SINE Alu -15 294 1 9225 196 20 61 chr5 37270166 37271262 -165814270 - L1PA16 LINE L1 -1159 5723 4830 2462 71 0 0 chr5 37271262 37271573 -165813959 - AluY SINE Alu 0 311 1 9225 196 20 61 chr5 37271573 37272842 -165812690 - L1PA16 LINE L1 -2052 4830 3510 329 282 97 46 chr5 37272820 37273036 -165812496 - L1PA16 LINE L1 -6114 749 523 * 1571 163 58 79 chr5 37273043 37273423 -165812109 + THE1C LTR MaLR 4 375 0 1674 220 21 13 chr5 37273427 37273814 -165811718 - L1PA16 LINE L1 -6347 516 127 380 317 17 0 chr5 37273946 37274066 -165811466 - MER94 DNA DNA -1 133 12 510 319 109 22 chr5 37274625 37275046 -165810486 + MLT1K LTR MaLR 85 561 -27 195 100 0 0 chr5 37276837 37276867 -165808665 + (T)n Simple_repeat Simple_repeat 1 30 0 192 214 0 0 chr5 37277506 37277562 -165807970 + (TG)n Simple_repeat Simple_repeat 1 56 0 1901 155 3 3 chr5 37277696 37277999 -165807533 - AluSx SINE Alu -9 303 1 37 0 0 0 chr5 37278105 37278142 -165807390 + AT_rich Low_complexity Low_complexity 1 37 0 1910 131 14 3 chr5 37278148 37278445 -165807087 + AluSq SINE Alu 1 300 -13 27 0 0 0 chr5 37280096 37280123 -165805409 + AT_rich Low_complexity Low_complexity 1 27 0 590 305 32 0 chr5 37280458 37280704 -165804828 - L1MC5 LINE L1 -48 7913 7660 519 212 53 99 chr5 37280715 37281017 -165804515 - L1MC5 LINE L1 -589 7372 7085 226 341 64 6 chr5 37281105 37281278 -165804254 - L1MC4a LINE L1 -1063 6745 6563 23 54 0 0 chr5 37281637 37281674 -165803858 + AT_rich Low_complexity Low_complexity 1 37 0 335 200 18 27 chr5 37282352 37282462 -165803070 - L1MD3 LINE L1 0 7995 7887 2379 58 0 23 chr5 37282540 37282850 -165802682 + AluY SINE Alu 1 303 -8 26 64 0 0 chr5 37282902 37282949 -165802583 + AT_rich Low_complexity Low_complexity 1 47 0 1900 113 47 0 chr5 37283190 37283464 -165802068 - AluSg SINE Alu -23 287 1 351 216 14 0 chr5 37283696 37283770 -165801762 - L1PB4 LINE L1 -3 6153 6079 184 75 25 25 chr5 37283988 37284028 -165801504 + (TA)n Simple_repeat Simple_repeat 1 40 0 252 0 0 0 chr5 37284586 37284614 -165800918 + (TA)n Simple_repeat Simple_repeat 1 28 0 329 143 0 16 chr5 37284614 37284677 -165800855 + (CA)n Simple_repeat Simple_repeat 1 62 0 233 233 0 0 chr5 37284677 37284720 -165800812 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 276 281 0 0 chr5 37284723 37284812 -165800720 + L1MC4 LINE L1 6615 6703 -1339 275 315 148 0 chr5 37285356 37285499 -165800033 + MIR SINE MIR 37 198 -64 244 325 0 0 chr5 37288289 37288372 -165797160 + L1ME1 LINE L1 6079 6161 -5 475 277 120 16 chr5 37288829 37289013 -165796519 - MER3 DNA MER1_type -5 204 2 681 215 76 5 chr5 37290253 37290476 -165795056 + Charlie5 DNA MER1_type 2348 2586 -26 1315 231 36 23 chr5 37291393 37291696 -165793836 - MLT1A1 LTR MaLR -57 308 2 588 263 24 14 chr5 37291713 37291922 -165793610 + L1MC3 LINE L1 4455 4665 -1481 6832 221 46 40 chr5 37291922 37293668 -165791864 + L1MC3 LINE L1 4942 6719 -1066 1777 152 54 0 chr5 37293668 37293964 -165791568 + AluSx SINE Alu 1 312 0 6832 221 46 40 chr5 37293964 37294535 -165790997 + L1MC3 LINE L1 6719 7285 -500 852 191 24 0 chr5 37294570 37294738 -165790794 + Tigger4(Zombi) DNA MER2_type 435 606 -2125 * 1555 144 22 7 chr5 37294734 37295011 -165790521 + Tigger4(Zombi) DNA MER2_type 2450 2730 -1 4254 26 0 0 chr5 37295012 37295548 -165789984 + L1PA4 LINE L1 5639 6174 0 912 219 64 112 chr5 37295553 37295946 -165789586 - MLT1A2 LTR MaLR 0 374 1 421 211 32 11 chr5 37295946 37296041 -165789491 + L1MC3 LINE L1 7682 7778 -7 310 272 96 103 chr5 37296178 37296626 -165788906 + L1MEc LINE L1 1113 1557 -4839 22 0 0 0 chr5 37296742 37296764 -165788768 + AT_rich Low_complexity Low_complexity 1 22 0 228 274 120 69 chr5 37298041 37298216 -165787316 + MLT1J LTR MaLR 1 184 -327 314 333 38 19 chr5 37298261 37298420 -165787112 + MLT1J2 LTR MaLR 266 427 -23 509 288 103 92 chr5 37298673 37298858 -165786674 + L1MEc LINE L1 3278 3459 -2756 2248 53 3 3 chr5 37298858 37299172 -165786360 + AluSc SINE Alu 1 314 0 509 288 103 92 chr5 37299172 37299596 -165785936 + L1MEc LINE L1 3459 3895 -2320 306 50 0 0 chr5 37301274 37301314 -165784218 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1535 164 26 58 chr5 37302296 37302608 -165782924 - AluJo SINE Alu -10 302 1 196 353 39 45 chr5 37303055 37303211 -165782321 - MIR SINE MIR -73 189 35 1007 149 0 0 chr5 37303611 37303772 -165781760 - AluJb SINE Alu -7 305 145 241 67 0 0 chr5 37303773 37303803 -165781729 - Alu SINE Alu -128 172 143 428 231 125 0 chr5 37303828 37303932 -165781600 - AluJo SINE Alu -131 181 65 25 0 0 0 chr5 37304875 37304900 -165780632 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr5 37305197 37305225 -165780307 + AT_rich Low_complexity Low_complexity 1 28 0 606 28 0 0 chr5 37306663 37306735 -165778797 + (GA)n Simple_repeat Simple_repeat 1 72 0 337 274 48 48 chr5 37309404 37309528 -165776004 - MIR SINE MIR -50 212 89 21 0 0 0 chr5 37309905 37309926 -165775606 + AT_rich Low_complexity Low_complexity 1 21 0 214 191 0 0 chr5 37310503 37310545 -165774987 + T-rich Low_complexity Low_complexity 1 42 0 255 260 74 107 chr5 37311864 37311924 -165773608 - MIR SINE MIR -55 207 147 955 62 78 0 chr5 37311924 37312052 -165773480 + MER85 DNA T2_type 1 138 -1 255 260 74 107 chr5 37312052 37312185 -165773347 - MIR SINE MIR -115 147 16 281 186 0 71 chr5 37312611 37312681 -165772851 + MER53 DNA DNA 2 66 -123 234 0 0 0 chr5 37312683 37312709 -165772823 + (CA)n Simple_repeat Simple_repeat 1 26 0 1462 179 157 0 chr5 37312709 37313022 -165772510 - MER47A DNA MER2_type -4 362 1 309 51 0 0 chr5 37313024 37313063 -165772469 + (CA)n Simple_repeat Simple_repeat 2 40 0 203 220 20 0 chr5 37313167 37313217 -165772315 + (TA)n Simple_repeat Simple_repeat 1 51 0 340 150 0 0 chr5 37313217 37313277 -165772255 + MER53 DNA DNA 129 188 -1 243 61 0 0 chr5 37314619 37314652 -165770880 + (TA)n Simple_repeat Simple_repeat 2 34 0 293 196 36 0 chr5 37314662 37314718 -165770814 + MER94 DNA DNA 30 87 -47 24 32 0 0 chr5 37314968 37314999 -165770533 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr5 37315337 37315366 -165770166 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr5 37315509 37315537 -165769995 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr5 37316751 37316782 -165768750 + AT_rich Low_complexity Low_complexity 1 31 0 2218 60 4 4 chr5 37317840 37318164 -165767368 - AluY SINE Alu 0 324 1 912 187 0 0 chr5 37318224 37318405 -165767127 - AluJb SINE Alu 0 315 135 311 312 91 71 chr5 37318420 37318728 -165766804 + L2 LINE L2 1871 2184 -1130 2383 80 0 3 chr5 37319592 37319904 -165765628 - AluY SINE Alu 0 311 1 23 33 0 0 chr5 37319925 37319955 -165765577 + AT_rich Low_complexity Low_complexity 1 30 0 538 213 17 104 chr5 37320102 37320332 -165765200 - L1MA9 LINE L1 -42 6270 6061 211 272 99 25 chr5 37321396 37321477 -165764055 - MER5A DNA MER1_type -68 121 35 200 306 174 0 chr5 37321763 37321884 -165763648 - MIR SINE MIR -119 143 2 439 331 68 37 chr5 37322040 37322363 -165763169 + LTR16A LTR ERVL 117 449 -1 2411 67 0 0 chr5 37322739 37323039 -165762493 - AluY SINE Alu -11 300 1 295 145 29 0 chr5 37323765 37323834 -165761698 + (TA)n Simple_repeat Simple_repeat 2 72 0 2019 102 0 11 chr5 37323994 37324302 -165761230 + AluSx SINE Alu 1 305 0 278 315 254 14 chr5 37324312 37324674 -165760858 + L3 LINE CR1 456 904 -673 234 157 29 14 chr5 37324675 37324745 -165760787 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 212 299 156 49 chr5 37324750 37324974 -165760558 + L3 LINE CR1 937 1184 -393 21 0 0 0 chr5 37325343 37325364 -165760168 + AT_rich Low_complexity Low_complexity 1 21 0 2402 77 0 3 chr5 37326721 37327031 -165758501 - AluSg SINE Alu -1 309 1 2365 92 0 25 chr5 37327879 37328196 -165757336 - AluSc SINE Alu 0 309 1 198 283 0 0 chr5 37330730 37330776 -165754756 + L2 LINE L2 3141 3186 -86 288 0 0 0 chr5 37331021 37331053 -165754479 + (TG)n Simple_repeat Simple_repeat 2 33 0 264 381 15 0 chr5 37331831 37331965 -165753567 - MIR SINE MIR -114 148 13 2038 80 83 0 chr5 37332942 37333230 -165752302 + AluSp SINE Alu 1 312 -1 919 226 116 81 chr5 37333855 37334014 -165751518 + MSTD LTR MaLR 1 153 -243 2165 126 3 0 chr5 37334014 37334315 -165751217 + AluSx SINE Alu 1 302 -10 919 226 116 81 chr5 37334315 37334527 -165751005 + MSTD LTR MaLR 153 385 -11 1509 271 31 35 chr5 37335328 37335849 -165749683 - LTR40a LTR ERVL 0 519 1 262 299 8 8 chr5 37336873 37337007 -165748525 + (TA)n Simple_repeat Simple_repeat 2 135 0 183 184 0 0 chr5 37337705 37337743 -165747789 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1949 122 3 11 chr5 37338328 37338615 -165746917 + AluSq SINE Alu 1 285 -28 279 223 0 0 chr5 37338615 37338727 -165746805 + (TA)n Simple_repeat Simple_repeat 1 112 0 903 121 57 0 chr5 37338800 37338921 -165746611 + AluSq/x SINE Alu 1 132 -180 189 74 0 0 chr5 37338921 37338948 -165746584 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 903 121 57 0 chr5 37338948 37338966 -165746566 + AluSq/x SINE Alu 132 148 -164 192 77 0 0 chr5 37338987 37339013 -165746519 + (A)n Simple_repeat Simple_repeat 1 26 0 34 0 0 0 chr5 37339143 37339177 -165746355 + AT_rich Low_complexity Low_complexity 1 34 0 237 308 96 19 chr5 37341037 37341141 -165744391 - MIR3 SINE MIR -31 177 66 282 268 71 16 chr5 37341603 37341730 -165743802 - L2 LINE L2 -1205 2109 1976 24 32 0 0 chr5 37342435 37342466 -165743066 + AT_rich Low_complexity Low_complexity 1 31 0 7835 33 0 0 chr5 37342620 37343557 -165741975 - L1PA4 LINE L1 -1819 4327 3391 8645 38 2 0 chr5 37343557 37345392 -165740140 + L1PA4 LINE L1 4304 6153 -2 1779 151 16 31 chr5 37346328 37346645 -165738887 - AluSx SINE Alu 0 312 1 1093 204 30 15 chr5 37346655 37346919 -165738613 + L1PA16 LINE L1 5881 6148 -18 1648 136 35 91 chr5 37348105 37348280 -165737252 + THE1C LTR MaLR 1 184 -191 2133 124 3 3 chr5 37348280 37348579 -165736953 - AluSq SINE Alu -14 299 1 1648 136 35 91 chr5 37348579 37348800 -165736732 + THE1C LTR MaLR 184 375 0 4169 118 72 58 chr5 37348800 37349572 -165735960 + THE1C-int LTR MaLR 1 783 -797 24 32 0 0 chr5 37349745 37349776 -165735756 + AT_rich Low_complexity Low_complexity 1 31 0 245 322 59 0 chr5 37349976 37350128 -165735404 - L1M4 LINE L1 -1721 4425 4265 338 299 28 33 chr5 37350345 37350559 -165734973 - L1M4 LINE L1 -2480 3666 3454 197 0 71 0 chr5 37350562 37350590 -165734942 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 948 173 0 0 chr5 37350592 37350742 -165734790 - AluJb SINE Alu -29 283 134 301 276 102 41 chr5 37350902 37351315 -165734217 - L1M4 LINE L1 -2853 3293 2856 16900 58 3 4 chr5 37351320 37354312 -165731220 - L1PA6 LINE L1 -6 6148 3157 1555 240 82 38 chr5 37354313 37354998 -165730534 - L1MC/D LINE L1 -568 5860 5137 307 313 73 8 chr5 37355124 37355383 -165730149 - L1MC/D LINE L1 -5039 1357 1082 23 33 0 0 chr5 37355538 37355568 -165729964 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr5 37355612 37355658 -165729874 + AT_rich Low_complexity Low_complexity 1 46 0 1936 157 51 32 chr5 37355815 37356358 -165729174 + MLT2A2 LTR ERVL 3 554 0 599 277 110 16 chr5 37356374 37356661 -165728871 + MER57A LTR ERV1 102 403 0 1470 245 122 30 chr5 37356966 37357505 -165728027 + MLT1E LTR MaLR 5 593 0 207 0 0 0 chr5 37359348 37359371 -165726161 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 528 280 91 57 chr5 37359769 37360054 -165725478 + L1ME LINE L1 4412 4686 -1476 2151 119 0 0 chr5 37360054 37360357 -165725175 + AluSx SINE Alu 2 304 -8 528 280 91 57 chr5 37360357 37361139 -165724393 + L1ME LINE L1 4686 5514 -648 40 49 0 0 chr5 37361735 37361796 -165723736 + AT_rich Low_complexity Low_complexity 1 61 0 24 0 0 0 chr5 37361921 37361945 -165723587 + AT_rich Low_complexity Low_complexity 1 24 0 2429 45 0 0 chr5 37362193 37362484 -165723048 - AluY SINE Alu -20 291 1 23 33 0 0 chr5 37363348 37363378 -165722154 + AT_rich Low_complexity Low_complexity 1 30 0 26 82 0 0 chr5 37364868 37364929 -165720603 + AT_rich Low_complexity Low_complexity 1 61 0 36 53 0 0 chr5 37365914 37365971 -165719561 + AT_rich Low_complexity Low_complexity 1 57 0 1541 273 110 46 chr5 37366592 37367855 -165717677 + L1ME1 LINE L1 3783 5142 -1004 3718 48 0 0 chr5 37367871 37368331 -165717201 - L1PA4 LINE L1 -3 6152 5693 1635 70 0 0 chr5 37368331 37368544 -165716988 - L1P LINE L1 -5933 213 1 1002 230 111 19 chr5 37368600 37369048 -165716484 + L1ME1 LINE L1 5184 5674 -743 237 33 0 0 chr5 37369049 37369079 -165716453 + (CA)n Simple_repeat Simple_repeat 1 30 0 984 126 0 26 chr5 37369085 37369236 -165716296 + AluSq/x SINE Alu 1 147 -166 236 200 62 0 chr5 37369445 37369510 -165716022 + L1ME1 LINE L1 6079 6147 -19 1656 318 98 52 chr5 37369979 37371359 -165714173 - L2 LINE L2 -566 2748 1306 1546 271 31 35 chr5 37372093 37372635 -165712897 + MLT1F LTR MaLR 3 542 0 218 313 24 24 chr5 37373474 37373557 -165711975 - L2 LINE L2 0 3272 3190 287 264 126 78 chr5 37374039 37374081 -165711451 + MER5B DNA MER1_type 1 40 -138 570 206 188 6 chr5 37374081 37374241 -165711291 - MER5A DNA MER1_type 0 189 1 287 264 126 78 chr5 37374241 37374365 -165711167 + MER5B DNA MER1_type 40 175 -3 960 244 75 54 chr5 37374418 37374804 -165710728 + MLT2D LTR ERVL 1 394 -20 202 114 0 29 chr5 37374867 37374902 -165710630 + (CA)n Simple_repeat Simple_repeat 1 34 0 590 213 9 0 chr5 37375596 37375704 -165709828 + MLT1E2 LTR MaLR 438 546 -80 26 30 0 0 chr5 37375964 37375997 -165709535 + AT_rich Low_complexity Low_complexity 1 33 0 1869 99 179 13 chr5 37376999 37377311 -165708221 - THE1B LTR MaLR 0 364 1 9845 114 35 35 chr5 37377311 37378891 -165706641 - THE1B-int LTR MaLR 0 1580 1 2645 88 11 6 chr5 37378891 37379253 -165706279 - THE1B LTR MaLR 0 364 1 2860 230 44 13 chr5 37379572 37380355 -165705177 + L1MB7 LINE L1 5375 6175 -9 25 65 0 0 chr5 37381857 37381903 -165703629 + AT_rich Low_complexity Low_complexity 1 46 0 313 242 91 111 chr5 37382060 37382258 -165703274 + MLT1H LTR MaLR 141 334 -215 21 0 0 0 chr5 37382915 37382936 -165702596 + AT_rich Low_complexity Low_complexity 1 21 0 630 339 122 35 chr5 37383053 37384002 -165701530 - L2 LINE L2 -845 2469 1438 180 0 0 0 chr5 37384922 37384942 -165700590 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 25 51 0 0 chr5 37385054 37385093 -165700439 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr5 37385504 37385525 -165700007 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr5 37385710 37385735 -165699797 + AT_rich Low_complexity Low_complexity 1 25 0 689 312 23 0 chr5 37385942 37386153 -165699379 - MIR SINE MIR -8 254 40 2110 99 24 0 chr5 37386168 37386462 -165699070 - AluSq SINE Alu -12 301 1 2127 173 57 2 chr5 37386503 37386907 -165698625 + MSTB LTR MaLR 1 426 0 548 214 23 12 chr5 37387023 37387196 -165698336 + GA-rich Low_complexity Low_complexity 3 177 0 189 278 37 0 chr5 37387283 37387337 -165698195 - L2 LINE L2 -225 3047 2992 200 188 0 0 chr5 37387509 37387541 -165697991 + polypurine Low_complexity Low_complexity 4 35 0 5980 29 0 0 chr5 37387646 37388348 -165697184 - L1PA4 LINE L1 -8 6147 5446 354 288 144 6 chr5 37388796 37388956 -165696576 + MIR SINE MIR 32 213 -49 426 54 0 0 chr5 37390738 37390794 -165694738 + L1PA3 LINE L1 6097 6152 -3 25 0 0 0 chr5 37390794 37390819 -165694713 + AT_rich Low_complexity Low_complexity 1 25 0 1714 173 27 10 chr5 37391011 37391311 -165694221 - AluJb SINE Alu -7 305 1 1343 166 0 0 chr5 37391722 37391939 -165693593 + AluSq SINE Alu 78 294 -19 29 0 0 0 chr5 37392224 37392253 -165693279 + AT_rich Low_complexity Low_complexity 1 29 0 1276 120 0 0 chr5 37392514 37392714 -165692818 + L1PB1 LINE L1 1 200 -6663 10182 154 45 13 chr5 37392716 37396269 -165689263 + L1PB1 LINE L1 636 4445 -2417 1119 227 3 13 chr5 37396298 37396606 -165688926 - L1 LINE L1 -2726 3420 3116 7118 172 16 4 chr5 37396621 37399029 -165686503 + L1PB1 LINE L1 4427 6858 -9 183 369 57 16 chr5 37399135 37399257 -165686275 + MIR3 SINE MIR 79 205 -3 244 259 17 0 chr5 37400670 37400728 -165684804 + MIR SINE MIR 96 154 -108 10709 194 33 8 chr5 37401014 37403019 -165682513 + L1MA3 LINE L1 1 2057 -5508 5290 149 17 13 chr5 37403009 37403765 -165681767 + L1MA3 LINE L1 6319 7086 -638 * 2083 124 53 31 chr5 37403765 37404121 -165681411 - THE1B LTR MaLR 0 364 1 5290 149 17 13 chr5 37404121 37404587 -165680945 + L1MA3 LINE L1 7086 7549 -175 616 183 63 0 chr5 37405464 37405590 -165679942 - MER20 DNA MER1_type 0 219 86 923 267 33 28 chr5 37405590 37405949 -165679583 + MLT1A1 LTR MaLR 1 361 -4 916 247 4 38 chr5 37405960 37406223 -165679309 + MLT1A2 LTR MaLR 121 374 0 299 244 0 47 chr5 37406227 37406313 -165679219 - MER20 DNA MER1_type -135 84 3 180 291 38 25 chr5 37406534 37406613 -165678919 + L2 LINE L2 2777 2856 -458 318 167 0 0 chr5 37406795 37406849 -165678683 + MLT2D LTR ERVL 1 54 -360 206 216 0 0 chr5 37406931 37406968 -165678564 + (TG)n Simple_repeat Simple_repeat 2 38 0 321 189 0 27 chr5 37407039 37407113 -165678419 - L1MA4 LINE L1 -200 6100 6029 780 160 80 17 chr5 37407115 37407290 -165678242 + L1MA4 LINE L1 6114 6299 -1 347 281 116 18 chr5 37408169 37408333 -165677199 - MIR SINE MIR -13 249 70 312 330 10 0 chr5 37408405 37408505 -165677027 - MIR SINE MIR -10 252 152 27 29 0 0 chr5 37409143 37409177 -165676355 + AT_rich Low_complexity Low_complexity 1 34 0 1046 211 144 28 chr5 37410208 37410535 -165674997 - MLT1A1 LTR MaLR 0 365 1 2380 65 0 0 chr5 37410995 37411288 -165674244 - AluY SINE Alu -18 293 1 1959 98 8 0 chr5 37412476 37412741 -165672791 + AluSg SINE Alu 6 272 -38 216 0 0 0 chr5 37412743 37412767 -165672765 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 405 234 80 29 chr5 37412815 37412990 -165672542 + MER53 DNA DNA 3 186 -3 239 222 12 37 chr5 37413132 37413213 -165672319 + MER116 DNA Mariner 1 79 -1 359 296 101 12 chr5 37413386 37413555 -165671977 - MLT1C LTR MaLR 0 467 284 531 331 0 12 chr5 37413577 37413740 -165671792 - ERVL LTR ERVL -5210 554 394 4507 184 22 13 chr5 37413795 37415016 -165670516 + L1MA6 LINE L1 4977 6209 -91 288 145 49 8 chr5 37414997 37415078 -165670454 + L1MA7 LINE L1 6223 6312 0 * 1101 228 14 83 chr5 37415079 37415482 -165670050 + MLT1D-int LTR MaLR 1010 1728 -7 542 244 175 72 chr5 37415557 37415906 -165669626 + MLT1D LTR MaLR 118 502 -3 195 346 20 20 chr5 37417631 37417732 -165667800 - L3 LINE CR1 -729 848 748 468 116 45 80 chr5 37417734 37417846 -165667686 - L1MA5 LINE L1 0 6300 6193 27 29 0 0 chr5 37418278 37418312 -165667220 + AT_rich Low_complexity Low_complexity 1 34 0 719 299 48 0 chr5 37418327 37418534 -165666998 - MIR SINE MIR -44 218 2 277 278 11 22 chr5 37419855 37419945 -165665587 + (TATATG)n Simple_repeat Simple_repeat 6 94 0 22 0 0 0 chr5 37419948 37419970 -165665562 + AT_rich Low_complexity Low_complexity 1 22 0 834 152 0 14 chr5 37422376 37422521 -165663011 + FLAM_C SINE Alu 1 143 0 917 207 0 0 chr5 37422544 37422718 -165662814 + AluJb SINE Alu 122 295 -17 24 0 0 0 chr5 37422862 37422886 -165662646 + AT_rich Low_complexity Low_complexity 1 24 0 377 267 81 105 chr5 37423606 37423864 -165661668 + MIR SINE MIR 5 256 -6 6543 161 14 11 chr5 37423904 37424926 -165660606 - L1PA11 LINE L1 0 6174 5157 435 152 13 0 chr5 37424926 37425005 -165660527 - MADE1 DNA Mariner 0 80 1 6543 161 14 11 chr5 37425005 37426017 -165659515 - L1PA11 LINE L1 -1017 5157 4130 4266 181 12 21 chr5 37426017 37426867 -165658665 + L1P LINE L1 1889 2730 -3416 305 310 43 9 chr5 37427221 37427337 -165658195 - L2 LINE L2 0 3313 3194 275 328 148 55 chr5 37427329 37427895 -165657637 + L2 LINE L2 2673 3268 -4 * 24 53 0 0 chr5 37428084 37428122 -165657410 + AT_rich Low_complexity Low_complexity 1 38 0 474 88 0 0 chr5 37428181 37428249 -165657283 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 23 68 0 0 chr5 37429542 37429586 -165655946 + AT_rich Low_complexity Low_complexity 1 44 0 284 68 0 23 chr5 37429889 37429933 -165655599 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 4069 196 21 14 chr5 37430376 37431240 -165654292 - L1MB1 LINE L1 -3 6165 5296 587 220 0 9 chr5 37431245 37431471 -165654061 + CT-rich Low_complexity Low_complexity 1 223 0 2564 254 21 12 chr5 37431475 37431855 -165653677 - L1MB1 LINE L1 -847 5299 4924 1793 128 33 4 chr5 37431855 37432161 -165653371 - AluSg SINE Alu 0 314 1 2564 254 21 12 chr5 37432161 37432524 -165653008 - L1MB1 LINE L1 -1222 4924 4548 1733 197 52 17 chr5 37432539 37433005 -165652527 + L1M4 LINE L1 4026 4507 -1639 353 215 43 0 chr5 37433006 37433099 -165652433 + L1M4 LINE L1 4444 4540 -1606 1689 92 5 0 chr5 37433128 37433346 -165652186 + AluSg/x SINE Alu 77 295 -17 1044 235 165 54 chr5 37434606 37435119 -165650413 + MLT1F1 LTR MaLR 3 567 0 21 0 0 0 chr5 37436729 37436750 -165648782 + AT_rich Low_complexity Low_complexity 1 21 0 215 265 0 0 chr5 37436856 37436905 -165648627 + (TA)n Simple_repeat Simple_repeat 2 50 0 2111 67 60 20 chr5 37437327 37437626 -165647906 + AluY SINE Alu 1 311 0 2336 46 13 3 chr5 37437765 37438070 -165647462 + L1PA5 LINE L1 5847 6154 0 232 314 66 8 chr5 37438725 37438846 -165646686 + L1MB3 LINE L1 101 228 -6314 27 0 0 0 chr5 37439264 37439291 -165646241 + AT_rich Low_complexity Low_complexity 1 27 0 193 366 204 0 chr5 37439409 37439502 -165646030 + L2 LINE L2 3142 3253 -19 292 202 0 48 chr5 37439969 37440053 -165645479 + L1MC4 LINE L1 6624 6703 -1339 3030 234 73 36 chr5 37440675 37441752 -165643780 + L1MB3 LINE L1 3891 5007 -1637 285 133 0 11 chr5 37441774 37441849 -165643683 + L1MB3 LINE L1 5788 5860 -809 2648 227 45 18 chr5 37441859 37441996 -165643536 + L1MB3 LINE L1 5971 6103 -578 2080 128 3 3 chr5 37441996 37442309 -165643223 + AluSq SINE Alu 1 313 0 2648 227 45 18 chr5 37442309 37442854 -165642678 + L1MB3 LINE L1 6103 6672 -9 226 136 51 0 chr5 37443113 37443172 -165642360 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 423 0 0 0 chr5 37443844 37443891 -165641641 + (CA)n Simple_repeat Simple_repeat 2 48 0 23 78 0 0 chr5 37444626 37444677 -165640855 + AT_rich Low_complexity Low_complexity 1 51 0 25 65 0 0 chr5 37444721 37444767 -165640765 + AT_rich Low_complexity Low_complexity 1 46 0 238 355 32 8 chr5 37444911 37445035 -165640497 + L1M4 LINE L1 608 734 -5900 262 298 64 64 chr5 37445798 37446578 -165638954 + L1M4 LINE L1 1407 2229 -4596 26 88 0 0 chr5 37446760 37446828 -165638704 + AT_rich Low_complexity Low_complexity 1 68 0 563 302 76 44 chr5 37447089 37447708 -165637824 + L1M4 LINE L1 2764 3402 -3242 186 43 0 0 chr5 37448593 37448616 -165636916 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 23 0 0 0 chr5 37450147 37450170 -165635362 + AT_rich Low_complexity Low_complexity 1 23 0 447 19 0 0 chr5 37451260 37451312 -165634220 + (TG)n Simple_repeat Simple_repeat 1 52 0 2120 89 3 24 chr5 37452184 37452476 -165633056 + AluSg SINE Alu 1 286 -24 312 248 38 48 chr5 37453131 37453236 -165632296 - L1MC4 LINE L1 -1357 6685 6582 31 44 0 0 chr5 37453681 37453726 -165631806 + AT_rich Low_complexity Low_complexity 1 45 0 2225 107 0 3 chr5 37454191 37454491 -165631041 + AluSc SINE Alu 1 299 -10 3487 176 34 9 chr5 37454698 37455397 -165630135 - L1MC1 LINE L1 -1 6332 5616 23 0 0 0 chr5 37455478 37455501 -165630031 + AT_rich Low_complexity Low_complexity 1 23 0 264 357 48 16 chr5 37455891 37456017 -165629515 - MER5A DNA MER1_type -3 186 57 1377 207 48 88 chr5 37456027 37456404 -165629128 - MLT1A2 LTR MaLR -4 370 9 2030 148 0 0 chr5 37457526 37457830 -165627702 - AluSx SINE Alu -8 304 1 298 280 30 30 chr5 37457994 37458094 -165627438 + MER5A DNA MER1_type 83 182 -7 25 51 0 0 chr5 37458324 37458363 -165627169 + AT_rich Low_complexity Low_complexity 1 39 0 23 68 0 0 chr5 37459188 37459232 -165626300 + AT_rich Low_complexity Low_complexity 1 44 0 21 71 0 0 chr5 37459304 37459346 -165626186 + AT_rich Low_complexity Low_complexity 1 42 0 249 247 41 0 chr5 37459836 37459909 -165625623 + GA-rich Low_complexity Low_complexity 2 77 0 368 192 14 14 chr5 37460256 37460329 -165625203 - Tigger5 DNA MER2_type 0 2323 2251 840 201 193 4 chr5 37460547 37460796 -165624736 - L1MB1 LINE L1 -648 5664 5369 * 1513 158 32 13 chr5 37460795 37461169 -165624363 + L1MB1 LINE L1 5646 6168 0 577 309 65 86 chr5 37461768 37462244 -165623288 + MLT1H1 LTR MaLR 8 473 -82 204 219 0 0 chr5 37462374 37462415 -165623117 + CT-rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr5 37463074 37463097 -165622435 + AT_rich Low_complexity Low_complexity 1 23 0 379 0 0 0 chr5 37463310 37463352 -165622180 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1925 125 7 0 chr5 37463352 37463633 -165621899 - AluSq SINE Alu -1 324 1 272 288 68 17 chr5 37463977 37464095 -165621437 - LTR16A LTR ERVL -324 126 3 226 268 197 56 chr5 37464256 37464398 -165621134 - L2 LINE L2 0 3313 3152 380 260 10 30 chr5 37464642 37464742 -165620790 + L2 LINE L2 3168 3265 -48 1277 215 86 38 chr5 37464762 37465043 -165620489 - MLT1C LTR MaLR -29 438 129 1874 143 58 12 chr5 37465043 37465371 -165620161 + MER61A LTR ERV1 1 343 0 1277 215 86 38 chr5 37465371 37465507 -165620025 - MLT1C LTR MaLR -338 129 1 236 246 149 118 chr5 37465910 37466105 -165619427 - L2 LINE L2 0 3313 3113 1470 239 104 73 chr5 37466144 37467045 -165618487 - MER63C DNA MER1_type -1 929 1 1648 334 133 16 chr5 37467060 37467326 -165618206 - L2 LINE L2 -284 2988 2755 2000 138 39 30 chr5 37467326 37467687 -165617845 + THE1B LTR MaLR 1 364 0 1648 334 133 16 chr5 37467687 37468392 -165617140 - L2 LINE L2 -517 2755 1909 286 353 106 17 chr5 37468487 37468722 -165616810 - L2 LINE L2 -814 2500 2245 2074 129 0 16 chr5 37469250 37469567 -165615965 - AluSx SINE Alu 0 312 1 180 0 0 0 chr5 37469801 37469821 -165615711 + (TG)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr5 37470954 37470978 -165614554 + AT_rich Low_complexity Low_complexity 1 24 0 189 343 71 18 chr5 37471287 37471456 -165614076 + MIR SINE MIR 69 246 -16 27 87 0 0 chr5 37472787 37472856 -165612676 + AT_rich Low_complexity Low_complexity 1 69 0 1771 172 0 13 chr5 37472943 37473257 -165612275 - AluJb SINE Alu -2 310 1 554 296 73 29 chr5 37473645 37473851 -165611681 + MIR SINE MIR 12 226 -36 2234 109 3 3 chr5 37473980 37474293 -165611239 + AluSp SINE Alu 1 313 0 207 0 0 0 chr5 37474948 37474971 -165610561 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 203 267 17 0 chr5 37475003 37475063 -165610469 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 506 227 21 0 chr5 37475549 37475690 -165609842 - L1MA8 LINE L1 -3 6288 6145 30 83 0 0 chr5 37475920 37475992 -165609540 + AT_rich Low_complexity Low_complexity 1 72 0 463 137 32 0 chr5 37476427 37476522 -165609010 + CT-rich Low_complexity Low_complexity 3 100 0 508 207 0 9 chr5 37476526 37476642 -165608890 - L1MA8 LINE L1 -5 6286 6172 1369 221 57 90 chr5 37476797 37477273 -165608259 + MER31B LTR ERV1 1 460 -6 202 257 9 179 chr5 37477274 37477492 -165608040 + L2 LINE L2 3133 3313 0 521 347 85 28 chr5 37477933 37478285 -165607247 + L1M4c LINE L1 175 546 -5767 2249 77 10 22 chr5 37478315 37478628 -165606904 - AluY SINE Alu -2 309 1 1333 275 70 7 chr5 37479142 37479886 -165605646 + L1M4c LINE L1 1426 2322 -4060 * 8096 215 39 40 chr5 37479883 37483332 -165602200 + L1MA9 LINE L1 2850 6311 -1 643 336 34 0 chr5 37484227 37484462 -165601070 + MIR SINE MIR 10 252 -10 341 331 113 7 chr5 37484495 37484867 -165600665 - L2 LINE L2 -175 3138 2725 422 323 55 89 chr5 37485260 37485585 -165599947 - L2 LINE L2 -609 2705 2392 27 22 0 22 chr5 37485657 37485677 -165599855 + AT_rich Low_complexity Low_complexity 1 20 -24 2173 92 0 24 chr5 37485677 37485969 -165599563 - AluSg SINE Alu -25 285 1 27 22 0 22 chr5 37485969 37485993 -165599539 + AT_rich Low_complexity Low_complexity 20 44 0 2160 101 6 31 chr5 37486569 37486886 -165598646 + AluSc SINE Alu 1 309 0 1841 166 0 0 chr5 37487456 37487757 -165597775 + AluSx SINE Alu 1 301 -11 26 0 0 0 chr5 37490580 37490606 -165594926 + AT_rich Low_complexity Low_complexity 1 26 0 284 320 109 0 chr5 37491130 37491258 -165594274 + MIR SINE MIR 18 159 -103 29 84 0 0 chr5 37491407 37491478 -165594054 + AT_rich Low_complexity Low_complexity 1 71 0 514 99 0 12 chr5 37492435 37492516 -165593016 + MADE1 DNA Mariner 1 80 0 2137 193 92 43 chr5 37493734 37494477 -165591055 - LTR1B LTR ERV1 0 785 9 228 222 0 0 chr5 37494542 37494587 -165590945 + L1MC4 LINE L1 6662 6706 -1336 23 0 0 0 chr5 37494753 37494776 -165590756 + AT_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr5 37495306 37495332 -165590200 + (T)n Simple_repeat Simple_repeat 1 26 0 210 118 0 0 chr5 37496172 37496206 -165589326 + (TC)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr5 37497607 37497630 -165587902 + AT_rich Low_complexity Low_complexity 1 23 0 1628 69 0 0 chr5 37497974 37498190 -165587342 - L1PA4 LINE L1 0 6155 5940 1967 26 0 0 chr5 37498190 37498424 -165587108 + L1PA4 LINE L1 5711 5944 -211 24 0 0 0 chr5 37498438 37498462 -165587070 + AT_rich Low_complexity Low_complexity 1 24 0 1519 212 16 43 chr5 37498859 37499231 -165586301 + MLT1A1 LTR MaLR 4 365 0 716 213 19 0 chr5 37500128 37500283 -165585249 + MLT1E2 LTR MaLR 468 625 -1 28 29 0 0 chr5 37500766 37500801 -165584731 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr5 37500928 37500953 -165584579 + AT_rich Low_complexity Low_complexity 1 25 0 184 294 35 71 chr5 37501936 37502021 -165583511 + L2 LINE L2 1398 1479 -1835 25 31 0 0 chr5 37503065 37503097 -165582435 + AT_rich Low_complexity Low_complexity 1 32 0 274 319 132 75 chr5 37503609 37504010 -165581522 + L3 LINE CR1 572 995 -582 398 331 23 12 chr5 37504012 37504184 -165581348 - MIR SINE MIR -3 259 86 210 315 19 37 chr5 37504166 37504274 -165581258 + L2 LINE L2 3199 3304 -9 * 26 0 0 0 chr5 37504380 37504406 -165581126 + AT_rich Low_complexity Low_complexity 1 26 0 1303 209 59 0 chr5 37505402 37505552 -165579980 - AluJo SINE Alu -22 290 150 381 22 0 0 chr5 37505552 37505598 -165579934 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1303 209 59 0 chr5 37505598 37505720 -165579812 - AluJo SINE Alu -162 150 2 24 0 0 0 chr5 37506151 37506175 -165579357 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr5 37506665 37506715 -165578817 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr5 37506750 37506771 -165578761 + AT_rich Low_complexity Low_complexity 1 21 0 276 30 0 0 chr5 37506819 37506852 -165578680 + (CA)n Simple_repeat Simple_repeat 2 34 0 383 107 27 70 chr5 37508425 37508612 -165576920 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 2127 112 7 0 chr5 37508616 37508903 -165576629 - AluSp SINE Alu -24 289 1 201 167 0 0 chr5 37509171 37509207 -165576325 + A-rich Low_complexity Low_complexity 5 40 0 365 259 0 24 chr5 37509228 37509313 -165576219 - MER5A DNA MER1_type -88 101 19 293 299 96 46 chr5 37509761 37509958 -165575574 - L2 LINE L2 -483 2831 2625 207 383 91 44 chr5 37510026 37510433 -165575099 - L2 LINE L2 -654 2660 2235 327 356 94 7 chr5 37511560 37511709 -165573823 + MIR SINE MIR 70 231 -31 473 316 37 16 chr5 37513063 37513253 -165572279 - MIR SINE MIR -55 207 14 6673 118 31 12 chr5 37514252 37515290 -165570242 - MER11C LTR ERVK -14 1057 1 1657 177 24 3 chr5 37515321 37515660 -165569872 + L1PA15 LINE L1 1985 2330 -4509 2144 219 88 55 chr5 37515696 37516399 -165569133 + MER50 LTR ERV1 9 734 0 2764 219 3 9 chr5 37516402 37517072 -165568460 + L1PA15 LINE L1 2371 3038 -3811 8851 221 47 14 chr5 37517133 37520719 -165564813 + L1PA15 LINE L1 3041 6865 -3 24 0 0 0 chr5 37520763 37520787 -165564745 + AT_rich Low_complexity Low_complexity 1 24 0 421 310 54 5 chr5 37521153 37521337 -165564195 - L1ME LINE L1 -297 5824 5632 893 233 184 75 chr5 37521378 37522048 -165563484 + LTR50 LTR ERVL 14 756 -39 180 0 0 0 chr5 37522412 37522432 -165563100 + (TCTA)n Simple_repeat Simple_repeat 1 20 0 27 49 0 0 chr5 37523627 37523668 -165561864 + AT_rich Low_complexity Low_complexity 1 41 0 28 61 0 37 chr5 37523734 37523816 -165561716 + AT_rich Low_complexity Low_complexity 1 79 0 232 280 54 101 chr5 37524510 37524678 -165560854 - MLT1J2 LTR MaLR -25 425 266 273 241 38 0 chr5 37525018 37525097 -165560435 + LTR33A LTR ERVL 395 476 -47 387 273 146 6 chr5 37525143 37525308 -165560224 - MLT1J2 LTR MaLR -242 208 21 23 40 0 0 chr5 37526125 37526150 -165559382 + AT_rich Low_complexity Low_complexity 1 25 0 10625 219 46 53 chr5 37526208 37529348 -165556184 + L1MA4A LINE L1 2 3121 -3727 329 145 16 0 chr5 37529348 37529410 -165556122 + (TA)n Simple_repeat Simple_repeat 2 64 0 10086 200 30 11 chr5 37529411 37532546 -165552986 + L1MA4A LINE L1 3497 6692 -313 2131 127 3 0 chr5 37532918 37533217 -165552315 + AluSx SINE Alu 1 300 -12 300 27 0 0 chr5 37533953 37533990 -165551542 + (TG)n Simple_repeat Simple_repeat 2 38 0 512 101 0 0 chr5 37534122 37534191 -165551341 + Alu SINE Alu 226 294 -16 330 26 0 0 chr5 37535529 37535568 -165549964 + (TG)n Simple_repeat Simple_repeat 2 40 0 403 123 0 0 chr5 37535569 37535626 -165549906 - AluS SINE Alu -14 287 231 1637 107 5 0 chr5 37535628 37535852 -165549680 + AluSg/x SINE Alu 71 295 -17 1125 70 0 7 chr5 37535854 37535997 -165549535 - AluY SINE Alu -169 142 1 22 80 0 0 chr5 37537837 37537887 -165547645 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr5 37537986 37538007 -165547525 + AT_rich Low_complexity Low_complexity 1 21 0 1343 177 51 102 chr5 37538728 37538916 -165546616 + MLT1A1 LTR MaLR 1 162 -203 444 19 0 0 chr5 37538916 37538969 -165546563 + (TG)n Simple_repeat Simple_repeat 2 54 0 1343 177 51 102 chr5 37538969 37539153 -165546379 + MLT1A1 LTR MaLR 162 354 -11 740 201 0 0 chr5 37539154 37539293 -165546239 + L1PB4 LINE L1 6010 6148 -8 560 233 17 0 chr5 37539605 37539725 -165545807 - MER7A DNA MER2_type -226 120 1 2907 103 2 0 chr5 37541043 37541442 -165544090 + MER84 LTR ERVI 1 400 -107 1963 110 4 4 chr5 37541442 37541723 -165543809 - AluSx SINE Alu -2 310 30 280 125 21 0 chr5 37541823 37541871 -165543661 + AluSg/x SINE Alu 177 225 -75 2732 129 73 10 chr5 37541871 37542352 -165543180 + MER9 LTR ERVK 1 511 0 4361 95 11 52 chr5 37542352 37543047 -165542485 + HERVK9 LTR ERVK 1 667 -5249 * 26387 95 4 0 chr5 37543043 37546591 -165538941 + HERVK9 LTR ERVK 1626 5186 -730 564 329 4 0 chr5 37546565 37546808 -165538724 + HERVK9 LTR ERVK 5975 6218 -1735 * 3308 102 2 2 chr5 37546793 37547245 -165538287 + HERVK9 LTR ERVK 5183 5634 -282 2022 151 9 9 chr5 37547281 37547623 -165537909 + HERVK9 LTR ERVK 5635 5916 0 2837 110 73 12 chr5 37547623 37548105 -165537427 + MER9 LTR ERVK 1 511 0 330 175 0 0 chr5 37548106 37548194 -165537338 + AluS SINE Alu 222 309 0 437 161 75 11 chr5 37548194 37548287 -165537245 + MER84 LTR ERVI 409 507 0 1968 148 10 0 chr5 37548444 37548748 -165536784 + AluSq SINE Alu 1 307 -6 545 181 21 7 chr5 37548754 37548898 -165536634 + GA-rich Low_complexity Low_complexity 3 148 0 2099 120 3 3 chr5 37549011 37549310 -165536222 + AluSx SINE Alu 1 299 -13 208 274 200 32 chr5 37549491 37549586 -165535946 - L2 LINE L2 -12 3301 3191 27 49 0 0 chr5 37549839 37549880 -165535652 + AT_rich Low_complexity Low_complexity 1 41 0 229 233 0 0 chr5 37549969 37550012 -165535520 - L1PB4 LINE L1 -1405 4741 4699 4246 180 40 41 chr5 37550014 37550551 -165534981 + L1PB4 LINE L1 4744 5280 -876 255 31 0 0 chr5 37550551 37550583 -165534949 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4246 180 40 41 chr5 37550583 37551464 -165534068 + L1PB4 LINE L1 5280 6156 0 244 263 97 18 chr5 37551757 37551871 -165533661 + L1MC4 LINE L1 6568 6690 -1352 270 119 102 17 chr5 37552549 37552608 -165532924 - L1MB7 LINE L1 -9 6175 6112 24 0 0 0 chr5 37553785 37553809 -165531723 + AT_rich Low_complexity Low_complexity 1 24 0 786 201 54 25 chr5 37553816 37554020 -165531512 + MER6B DNA MER2_type 1 210 0 186 43 0 0 chr5 37554040 37554063 -165531469 + (TTA)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr5 37554833 37554855 -165530677 + AT_rich Low_complexity Low_complexity 1 22 0 2037 129 0 13 chr5 37554974 37555277 -165530255 - AluSx SINE Alu -13 299 1 27 0 0 65 chr5 37555520 37555566 -165529966 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr5 37556009 37556030 -165529502 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr5 37558582 37558604 -165526928 + AT_rich Low_complexity Low_complexity 1 22 0 759 50 25 25 chr5 37559004 37559125 -165526407 + (GAAA)n Simple_repeat Simple_repeat 2 122 0 291 149 40 0 chr5 37559792 37559866 -165525666 + (ATATG)n Simple_repeat Simple_repeat 1 77 0 1987 138 0 22 chr5 37561200 37561512 -165524020 - AluSx SINE Alu -7 305 1 1573 124 24 121 chr5 37562109 37562448 -165523084 + AluYb8 SINE Alu 3 308 -10 2502 242 110 24 chr5 37562736 37562859 -165522673 + L1MD2 LINE L1 5497 5608 -751 2085 117 16 3 chr5 37562859 37563168 -165522364 - AluSq SINE Alu 0 313 1 2502 242 110 24 chr5 37563168 37563650 -165521882 + L1MD2 LINE L1 5608 6186 -173 321 100 0 0 chr5 37563650 37563700 -165521832 + (CA)n Simple_repeat Simple_repeat 1 50 0 2502 242 110 24 chr5 37563700 37563875 -165521657 + L1MD2 LINE L1 6186 6345 -14 2469 61 0 0 chr5 37564087 37564384 -165521148 - AluY SINE Alu -14 297 1 2097 129 3 0 chr5 37564646 37564948 -165520584 + AluSp SINE Alu 1 303 -10 1380 229 57 25 chr5 37565921 37566275 -165519257 + MLT1A1 LTR MaLR 1 365 0 2111 212 24 7 chr5 37566329 37566786 -165518746 + MLT1C LTR MaLR 1 465 -2 211 209 0 0 chr5 37569123 37569166 -165516366 + CT-rich Low_complexity Low_complexity 2 44 0 296 267 218 33 chr5 37569166 37569469 -165516063 + LTR33A LTR ERVL 165 523 0 2306 155 86 6 chr5 37569581 37570325 -165515207 - Tigger4(Zombi) DNA MER2_type 0 2731 1876 2229 84 0 7 chr5 37570325 37570610 -165514922 + AluY SINE Alu 1 283 -28 471 214 0 0 chr5 37570630 37570714 -165514818 - Tigger4(Zombi) DNA MER2_type -2647 84 1 1771 191 0 0 chr5 37570971 37571265 -165514267 + AluJb SINE Alu 7 300 -12 1285 174 19 63 chr5 37571330 37571600 -165513932 + AluJo SINE Alu 16 273 -39 496 180 0 0 chr5 37571600 37571689 -165513843 + AluJ/FRAM SINE Alu 222 310 -2 3020 162 10 4 chr5 37571751 37572244 -165513288 + LTR28-int LTR ERV1 6595 7090 -1 4463 200 84 21 chr5 37572252 37573205 -165512327 + LTR28 LTR ERV1 8 1020 0 356 213 64 21 chr5 37574058 37574152 -165511380 - MLT1J2 LTR MaLR -24 426 329 2499 60 3 0 chr5 37574554 37574852 -165510680 - AluY SINE Alu -12 299 1 950 143 116 37 chr5 37575351 37575540 -165509992 + AluJb SINE Alu 86 289 -23 21 0 0 0 chr5 37577328 37577349 -165508183 + AT_rich Low_complexity Low_complexity 1 21 0 1175 141 5 28 chr5 37577860 37578073 -165507459 + L1PA12 LINE L1 5961 6168 0 312 318 71 30 chr5 37578394 37578592 -165506940 + MLT1H LTR MaLR 153 358 -191 306 281 11 11 chr5 37580272 37580361 -165505171 - L1MC4 LINE L1 -1340 6702 6614 225 244 0 44 chr5 37580396 37580486 -165505046 - L1MC4 LINE L1 -1339 6703 6618 288 0 0 0 chr5 37580488 37580520 -165505012 + (CA)n Simple_repeat Simple_repeat 1 32 0 955 203 57 33 chr5 37580921 37581133 -165504399 + MER20 DNA MER1_type 1 217 -2 210 208 0 0 chr5 37581541 37581594 -165503938 + (CA)n Simple_repeat Simple_repeat 2 54 0 183 319 28 28 chr5 37581815 37581887 -165503645 + L2 LINE L2 3173 3244 -28 210 37 0 0 chr5 37581892 37581919 -165503613 + (TC)n Simple_repeat Simple_repeat 1 27 0 596 312 28 37 chr5 37582538 37582756 -165502776 - MER58A DNA MER1_type -8 216 1 2144 127 0 6 chr5 37582796 37583110 -165502422 + AluSx SINE Alu 1 312 0 333 0 0 0 chr5 37583662 37583699 -165501833 + (CA)n Simple_repeat Simple_repeat 2 38 0 258 105 0 0 chr5 37585067 37585105 -165500427 + (TA)n Simple_repeat Simple_repeat 2 39 0 300 333 77 16 chr5 37585429 37585612 -165499920 + MIR SINE MIR 23 216 -46 23 54 0 0 chr5 37586624 37586661 -165498871 + AT_rich Low_complexity Low_complexity 1 37 0 2499 46 0 16 chr5 37586985 37587292 -165498240 + AluY SINE Alu 1 302 -9 26 30 0 0 chr5 37588478 37588511 -165497021 + AT_rich Low_complexity Low_complexity 1 33 0 180 176 0 0 chr5 37588609 37588643 -165496889 + (TA)n Simple_repeat Simple_repeat 2 35 0 26 50 0 0 chr5 37588954 37588994 -165496538 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr5 37590941 37590972 -165494560 + AT_rich Low_complexity Low_complexity 1 31 0 1276 247 29 14 chr5 37590979 37591327 -165494205 + L1PBa LINE L1 8 360 -6503 9774 170 101 8 chr5 37591388 37594535 -165490997 + L1PBa LINE L1 620 4057 -2805 377 57 38 0 chr5 37594545 37594598 -165490934 - MLT2A2 LTR ERVL 0 453 399 245 246 0 0 chr5 37594566 37594631 -165490901 - LTR66 LTR ERVL -152 458 394 * 335 227 31 52 chr5 37594631 37594728 -165490804 - L1MC4 LINE L1 -1339 6703 6609 24 32 0 0 chr5 37594734 37594765 -165490767 + AT_rich Low_complexity Low_complexity 1 31 0 2891 89 20 5 chr5 37594785 37595179 -165490353 - MLT2A1 LTR ERVL -44 400 1 41729 87 13 5 chr5 37595179 37600726 -165484806 - HERVL-A1 LTR ERVL 0 5654 63 7128 52 3 9 chr5 37600729 37602410 -165483122 + L1PA6 LINE L1 4470 6144 -10 1239 343 49 10 chr5 37602419 37603014 -165482518 - L2 LINE L2 -690 2624 2007 2108 92 0 83 chr5 37603026 37603351 -165482181 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr5 37603587 37603608 -165481924 + AT_rich Low_complexity Low_complexity 1 21 0 279 202 0 48 chr5 37603786 37603870 -165481662 - L1MC4 LINE L1 -1339 6703 6624 196 366 204 0 chr5 37604337 37604430 -165481102 - L2 LINE L2 -19 3253 3142 27 0 0 0 chr5 37604548 37604575 -165480957 + AT_rich Low_complexity Low_complexity 1 27 0 2164 118 3 0 chr5 37605041 37605338 -165480194 - AluSx SINE Alu -14 298 1 290 350 72 46 chr5 37605440 37605789 -165479743 + L2 LINE L2 2419 2776 -538 45 34 0 0 chr5 37606160 37606219 -165479313 + AT_rich Low_complexity Low_complexity 1 59 0 387 300 47 24 chr5 37606334 37606504 -165479028 + L1MEc LINE L1 1806 1979 -4417 394 288 39 27 chr5 37606617 37606876 -165478656 + L1MEc LINE L1 1958 2267 -3988 2733 255 28 77 chr5 37606886 37607977 -165477555 + L1ME2 LINE L1 321 1357 -5498 2029 264 50 7 chr5 37607979 37608725 -165476807 + L1ME2 LINE L1 1558 2326 -4633 1119 235 86 12 chr5 37608737 37609348 -165476184 + L1ME2 LINE L1 5780 6426 -569 516 266 107 19 chr5 37609374 37609645 -165475887 + L1M4 LINE L1 4590 4884 -1262 488 234 48 125 chr5 37609829 37610077 -165475455 + MLT1F1-int LTR MaLR 972 1200 -171 295 270 61 9 chr5 37610179 37610294 -165475238 + MLT1F1-int LTR MaLR 1249 1369 -2 1464 213 75 77 chr5 37610298 37610833 -165474699 + MLT1F1 LTR MaLR 3 538 -29 378 283 35 14 chr5 37610856 37611001 -165474531 + L1ME2 LINE L1 6659 6806 -169 1308 199 124 68 chr5 37611368 37611780 -165473752 + MLT1D LTR MaLR 21 455 -50 399 311 38 8 chr5 37611831 37611963 -165473569 - MIR SINE MIR -108 154 19 276 241 52 17 chr5 37613230 37613404 -165472128 + (TA)n Simple_repeat Simple_repeat 1 180 0 775 289 31 22 chr5 37613853 37614078 -165471454 - MIR SINE MIR -8 254 28 643 210 6 12 chr5 37614650 37614812 -165470720 - L1P LINE L1 -918 5228 5068 5627 207 18 8 chr5 37614843 37616960 -165468572 - L1PA15 LINE L1 -45 6120 4006 2139 116 0 3 chr5 37616960 37617252 -165468280 - AluSx SINE Alu -21 291 1 5627 207 18 8 chr5 37617252 37617563 -165467969 - L1PA15 LINE L1 -2159 4006 3700 207 69 0 0 chr5 37617567 37617596 -165467936 + (TTG)n Simple_repeat Simple_repeat 1 29 0 306 210 16 0 chr5 37617696 37617758 -165467774 + AluJ/FRAM SINE Alu 218 280 -22 260 26 0 26 chr5 37617760 37617798 -165467734 + (TTAAA)n Simple_repeat Simple_repeat 3 39 0 738 210 53 84 chr5 37617842 37617891 -165467641 + MLT1A1 LTR MaLR 112 161 -204 1425 197 44 0 chr5 37617891 37618186 -165467346 + AluSx SINE Alu 5 312 0 738 210 53 84 chr5 37618186 37618398 -165467134 + MLT1A1 LTR MaLR 161 365 0 1714 171 57 84 chr5 37618635 37619075 -165466457 - MSTA LTR MaLR 0 428 1 317 274 65 81 chr5 37619381 37619567 -165465965 + L1MEd LINE L1 833 1015 -5104 2105 126 0 0 chr5 37620357 37620650 -165464882 + AluSq SINE Alu 13 305 -8 620 296 38 10 chr5 37621165 37621456 -165464076 + L1MEd LINE L1 3197 3495 -2634 702 306 37 33 chr5 37621457 37621911 -165463621 + L1MEd LINE L1 3881 4336 -1793 21 36 0 0 chr5 37622391 37622419 -165463113 + AT_rich Low_complexity Low_complexity 1 28 0 295 318 85 8 chr5 37622435 37622564 -165462968 - MIR SINE MIR -77 185 47 284 308 26 0 chr5 37622999 37623077 -165462455 - MLT1J LTR MaLR -317 194 115 21 36 0 0 chr5 37624918 37624946 -165460586 + AT_rich Low_complexity Low_complexity 1 28 0 1710 154 58 28 chr5 37625426 37625790 -165459742 - THE1C LTR MaLR 0 375 1 280 344 45 25 chr5 37625948 37626105 -165459427 + MIR SINE MIR 11 170 -92 195 321 54 62 chr5 37626554 37626666 -165458866 + MIR SINE MIR 5 115 -147 268 248 248 0 chr5 37627260 37627361 -165458171 - MIR SINE MIR -13 249 124 1800 213 67 32 chr5 37628078 37628542 -165456990 + MER4E LTR ERV1 300 779 0 181 273 18 0 chr5 37628544 37628599 -165456933 + L2 LINE L2 3258 3313 0 210 174 0 43 chr5 37628671 37628717 -165456815 + L2 LINE L2 3257 3300 -13 2369 97 0 3 chr5 37628718 37629027 -165456505 + AluSp SINE Alu 1 308 -5 405 0 0 0 chr5 37629027 37629072 -165456460 + (TA)n Simple_repeat Simple_repeat 2 46 0 1745 111 12 4 chr5 37630554 37630806 -165454726 + AluSg SINE Alu 40 293 -17 279 161 0 0 chr5 37631153 37631209 -165454323 + (TA)n Simple_repeat Simple_repeat 1 56 0 258 369 34 13 chr5 37632134 37632283 -165453249 - L2 LINE L2 -941 2373 2222 441 0 0 0 chr5 37632456 37632505 -165453027 + (CA)n Simple_repeat Simple_repeat 2 50 0 2322 248 32 13 chr5 37633166 37633690 -165451842 + MLT2B3 LTR ERVL 1 534 -20 24 53 0 0 chr5 37635119 37635157 -165450375 + AT_rich Low_complexity Low_complexity 1 38 0 1390 234 132 55 chr5 37635272 37635742 -165449790 + MLT2B2 LTR ERVL 2 507 -8 1623 313 47 26 chr5 37635911 37636445 -165449087 + L1MDb LINE L1 7 551 -5858 3628 253 85 24 chr5 37636528 37638391 -165447141 + L1MDb LINE L1 668 2672 -3893 1571 275 66 48 chr5 37638380 37639165 -165446367 + L1M4 LINE L1 4075 4873 -1273 * 977 249 17 48 chr5 37639165 37639518 -165446014 + L1MD2 LINE L1 6016 6357 -2 22 56 0 0 chr5 37639864 37639900 -165445632 + AT_rich Low_complexity Low_complexity 1 36 0 761 231 6 0 chr5 37640042 37640202 -165445330 - L1MA10 LINE L1 -492 5820 5660 2002 191 47 61 chr5 37640202 37640549 -165444983 + L1MA10 LINE L1 5833 6172 -162 335 23 23 0 chr5 37640549 37640593 -165444939 + (CA)n Simple_repeat Simple_repeat 2 46 0 2002 191 47 61 chr5 37640593 37640754 -165444778 + L1MA10 LINE L1 6172 6334 0 233 259 89 54 chr5 37641021 37641133 -165444399 + HAL1 LINE L1 4 119 -2388 1412 165 31 4 chr5 37641973 37642227 -165443305 + AluSx SINE Alu 26 286 -26 440 285 34 50 chr5 37642541 37642720 -165442812 - MER5B DNA MER1_type 0 178 3 24 32 0 0 chr5 37643569 37643600 -165441932 + AT_rich Low_complexity Low_complexity 1 31 0 204 97 0 0 chr5 37643701 37643732 -165441800 + (TG)n Simple_repeat Simple_repeat 2 32 0 242 327 40 10 chr5 37644103 37644204 -165441328 + LTR67 LTR ERVL 440 543 -14 655 232 116 26 chr5 37644478 37644668 -165440864 - MER3 DNA MER1_type -2 207 1 2496 59 0 0 chr5 37644951 37645255 -165440277 + AluY SINE Alu 1 304 -7 1238 87 0 0 chr5 37645255 37645453 -165440079 + AluY SINE Alu 124 321 0 1568 183 3 11 chr5 37646064 37646349 -165439183 - AluJb SINE Alu -19 293 11 1068 157 81 157 chr5 37647987 37648234 -165437298 - MER7A DNA MER2_type -2733 305 90 1280 120 37 5 chr5 37648234 37648451 -165437081 + L1PA10 LINE L1 5944 6167 -1 1068 157 81 157 chr5 37648451 37648535 -165436997 - MER7A DNA MER2_type -2948 90 1 254 286 0 71 chr5 37649014 37649112 -165436420 + L2 LINE L2 3182 3272 0 225 151 0 0 chr5 37649399 37649452 -165436080 + A-rich Low_complexity Low_complexity 1 53 0 2150 117 0 19 chr5 37649658 37649974 -165435558 + AluSq SINE Alu 3 312 -1 22 0 0 0 chr5 37650131 37650153 -165435379 + AT_rich Low_complexity Low_complexity 1 22 0 403 316 100 60 chr5 37650202 37650548 -165434984 + L1MEd LINE L1 19 389 -5730 758 59 0 0 chr5 37650548 37650649 -165434883 + L1PA4 LINE L1 6050 6150 -5 403 316 100 60 chr5 37650649 37650754 -165434778 + L1MEd LINE L1 389 488 -5631 2077 113 0 3 chr5 37651159 37651484 -165434048 + AluSx SINE Alu 1 324 0 28 86 0 0 chr5 37651693 37651763 -165433769 + AT_rich Low_complexity Low_complexity 1 70 0 1961 162 0 0 chr5 37651852 37652330 -165433202 + AluSx SINE Alu 1 478 0 1332 246 22 33 chr5 37652331 37652693 -165432839 + MLT1B LTR MaLR 33 390 0 4480 70 50 2 chr5 37653783 37654385 -165431147 + L1PA7 LINE L1 5519 6149 -5 25 0 0 0 chr5 37655149 37655174 -165430358 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr5 37655207 37655232 -165430300 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr5 37655267 37655297 -165430235 + AT_rich Low_complexity Low_complexity 1 30 0 633 218 5 17 chr5 37655509 37655659 -165429873 - MER20 DNA MER1_type -5 214 65 280 241 17 0 chr5 37655875 37655933 -165429599 - MER20 DNA MER1_type -152 67 9 315 49 0 0 chr5 37655943 37655984 -165429548 + (CA)n Simple_repeat Simple_repeat 2 42 0 28 0 0 0 chr5 37657806 37657834 -165427698 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr5 37657976 37658002 -165427530 + AT_rich Low_complexity Low_complexity 1 26 0 936 306 39 29 chr5 37658087 37658574 -165426958 + L1MC/D LINE L1 5262 5753 -2055 1262 266 24 3 chr5 37658876 37659210 -165426322 - MER58B DNA MER1_type 0 341 1 273 208 19 0 chr5 37659703 37659756 -165425776 - Tigger3(Golem) DNA MER2_type -2974 55 2 185 180 20 0 chr5 37659950 37660000 -165425532 + (TA)n Simple_repeat Simple_repeat 2 52 0 5085 265 58 63 chr5 37660240 37663309 -165422223 + L1PA13 LINE L1 2 3073 -3724 7722 76 6 20 chr5 37663348 37664421 -165421111 - MER11C LTR ERVK -14 1057 1 1449 289 14 2 chr5 37664421 37664908 -165420624 + L1 LINE L1 3068 3560 -3237 21 0 0 0 chr5 37664948 37664969 -165420563 + AT_rich Low_complexity Low_complexity 1 21 0 510 317 30 15 chr5 37665095 37665363 -165420169 + L1PA12 LINE L1 11 282 -7299 6312 252 18 18 chr5 37666613 37668978 -165416554 + L1PA12 LINE L1 2403 4772 -2812 4862 154 25 8 chr5 37669083 37669934 -165415598 + L1PA16 LINE L1 5293 6157 -9 14150 135 10 7 chr5 37670233 37672539 -165412993 - L1P LINE L1 -1032 5114 2802 4336 72 48 0 chr5 37672537 37673123 -165412409 + L1PA8A LINE L1 5490 6103 -28 * 25 0 0 0 chr5 37673808 37673833 -165411699 + AT_rich Low_complexity Low_complexity 1 25 0 2928 91 0 0 chr5 37673925 37674526 -165411006 - L1PA7 LINE L1 -589 5565 4965 4338 58 19 10 chr5 37674526 37675093 -165410439 + L1PA7 LINE L1 5566 6154 0 21 0 0 0 chr5 37675160 37675181 -165410351 + AT_rich Low_complexity Low_complexity 1 21 0 2104 86 3 58 chr5 37677646 37677971 -165407561 + AluY SINE Alu 1 307 -4 2043 143 3 0 chr5 37678090 37678397 -165407135 + AluSq SINE Alu 1 308 -5 251 378 45 19 chr5 37679004 37679160 -165406372 + MIR3 SINE MIR 23 182 -26 34 24 0 0 chr5 37679165 37679206 -165406326 + AT_rich Low_complexity Low_complexity 1 41 0 2115 158 11 13 chr5 37679915 37680289 -165405243 + THE1C LTR MaLR 3 375 0 8403 137 51 53 chr5 37680297 37681871 -165403661 + THE1C-int LTR MaLR 10 1580 0 1869 176 24 21 chr5 37681871 37682245 -165403287 + THE1C LTR MaLR 1 375 0 2382 279 66 28 chr5 37682871 37684161 -165401371 - L1 LINE L1 -3190 2780 1431 956 269 26 4 chr5 37684161 37684395 -165401137 - MER8 DNA MER2_type 0 239 1 2382 279 66 28 chr5 37684395 37685439 -165400093 - L1 LINE L1 -4539 1431 428 322 307 20 47 chr5 37685611 37685761 -165399771 - L1 LINE L1 -5497 394 249 894 324 30 30 chr5 37685866 37686233 -165399299 - L1 LINE L1 -5524 367 1 474 302 42 37 chr5 37686233 37686448 -165399084 - L2 LINE L2 -529 2785 2570 327 148 46 28 chr5 37686536 37686644 -165398888 + (TA)n Simple_repeat Simple_repeat 1 110 0 336 327 67 22 chr5 37686818 37687130 -165398402 - L2 LINE L2 -1005 2309 1984 306 333 0 0 chr5 37687253 37687343 -165398189 + L1MC4 LINE L1 6614 6703 -1339 301 303 0 0 chr5 37687297 37687386 -165398146 - L1MC4 LINE L1 -1339 6703 6615 * 182 180 16 0 chr5 37688955 37689016 -165396516 + A-rich Low_complexity Low_complexity 3 64 0 240 35 0 0 chr5 37689318 37689347 -165396185 + (TG)n Simple_repeat Simple_repeat 2 30 0 210 258 61 98 chr5 37689745 37689877 -165395655 + MIR SINE MIR 28 154 -108 1072 248 33 51 chr5 37690646 37691041 -165394491 - MLT1B LTR MaLR 0 390 3 545 326 53 28 chr5 37691717 37692002 -165393530 + L1MC4a LINE L1 5364 5655 -2153 255 291 227 0 chr5 37692192 37692333 -165393199 + L1MC4a LINE L1 5748 5920 -1888 26 30 0 0 chr5 37692333 37692366 -165393166 + AT_rich Low_complexity Low_complexity 1 33 0 1536 138 10 51 chr5 37692367 37692678 -165392854 - L1MA3 LINE L1 -208 6097 5800 183 298 0 0 chr5 37692847 37692894 -165392638 - L3 LINE CR1 -4 1573 1527 537 271 53 0 chr5 37693739 37693872 -165391660 + MER5A DNA MER1_type 27 166 -23 1342 240 80 15 chr5 37694116 37694453 -165391079 + MLT1B LTR MaLR 32 390 0 1683 167 3 37 chr5 37694520 37694843 -165390689 + AluJo SINE Alu 1 312 0 313 329 56 12 chr5 37694925 37695086 -165390446 + MIR SINE MIR 66 233 -29 1190 140 78 26 chr5 37695679 37695977 -165389555 - MER4E LTR ERV1 -141 638 273 587 207 6 55 chr5 37696551 37696670 -165388862 - L1MA10 LINE L1 -7 6327 6217 4571 141 89 6 chr5 37696670 37697501 -165388031 + MER4D LTR ERV1 1 900 -3 587 207 6 55 chr5 37697501 37697545 -165387987 - L1MA10 LINE L1 -117 6217 6172 360 0 0 0 chr5 37697568 37697608 -165387924 + (TG)n Simple_repeat Simple_repeat 2 41 0 204 255 0 0 chr5 37697983 37698030 -165387502 + T-rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr5 37698290 37698311 -165387221 + AT_rich Low_complexity Low_complexity 1 21 0 1029 319 143 31 chr5 37698891 37699641 -165385891 - L2 LINE L2 -337 2977 2144 1731 223 53 65 chr5 37700393 37700944 -165384588 - MER74A LTR ERVL -14 544 1 332 346 129 38 chr5 37700944 37701207 -165384325 - MER45C DNA AcHobo -333 620 334 580 303 52 58 chr5 37701266 37701480 -165384052 - MER45C DNA AcHobo -606 347 134 5565 25 0 3 chr5 37701480 37702131 -165383401 + L1PA3 LINE L1 5507 6155 0 580 303 52 58 chr5 37702131 37702246 -165383286 - MER45C DNA AcHobo -819 134 20 219 320 0 13 chr5 37702806 37702884 -165382648 + MIR SINE MIR 169 245 -17 2216 97 0 0 chr5 37704403 37704691 -165380841 + AluSg1 SINE Alu 1 288 -21 2152 103 78 6 chr5 37705352 37705700 -165379832 + THE1C LTR MaLR 1 373 -2 393 324 139 6 chr5 37708517 37708690 -165376842 - MIR SINE MIR -5 257 62 614 304 88 5 chr5 37709197 37709401 -165376131 - MLT1J2 LTR MaLR -131 319 99 1036 230 62 60 chr5 37709841 37710370 -165375162 + MLT1E LTR MaLR 51 593 0 23 0 0 0 chr5 37710981 37711004 -165374528 + AT_rich Low_complexity Low_complexity 1 23 0 2127 108 3 3 chr5 37711204 37711501 -165374031 - AluSx SINE Alu -15 297 1 327 309 43 25 chr5 37711580 37711742 -165373790 + Charlie8 DNA MER1_type 7 171 -2246 334 261 304 0 chr5 37712510 37712648 -165372884 - MER5A DNA MER1_type -9 180 1 609 92 0 0 chr5 37712949 37713047 -165372485 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 21 36 0 0 chr5 37713152 37713180 -165372352 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr5 37713406 37713429 -165372103 + AT_rich Low_complexity Low_complexity 1 23 0 818 289 150 11 chr5 37714331 37714691 -165370841 + MLT1J2 LTR MaLR 4 413 -37 268 309 15 0 chr5 37715458 37715526 -165370006 + MIR SINE MIR 194 262 0 283 370 11 54 chr5 37716118 37716302 -165369230 - MIR SINE MIR -21 241 66 26 30 0 0 chr5 37716587 37716620 -165368912 + AT_rich Low_complexity Low_complexity 1 33 0 198 341 23 23 chr5 37717008 37717096 -165368436 + MIR SINE MIR 52 139 -123 834 239 60 98 chr5 37718718 37719065 -165366467 + LTR37B LTR ERV1 6 334 -134 2080 127 10 0 chr5 37719065 37719364 -165366168 - AluSq SINE Alu -11 302 1 834 239 60 98 chr5 37719364 37719467 -165366065 + LTR37B LTR ERV1 334 439 -29 304 333 26 17 chr5 37720668 37720785 -165364747 + MER5A DNA MER1_type 63 180 -9 459 349 26 5 chr5 37722680 37722872 -165362660 + MIR SINE MIR 6 201 -61 932 174 0 13 chr5 37723140 37723295 -165362237 - AluJo SINE Alu -33 279 127 951 173 106 16 chr5 37723295 37723549 -165361983 + Charlie1 DNA MER1_type 2485 2761 0 347 328 49 16 chr5 37724181 37724364 -165361168 - L1ME3A LINE L1 -4 6166 5978 477 304 29 42 chr5 37724381 37724693 -165360839 - L1ME3A LINE L1 -238 5932 5625 180 97 0 0 chr5 37724698 37724729 -165360803 + (T)n Simple_repeat Simple_repeat 1 31 0 1361 276 62 74 chr5 37724827 37725132 -165360400 - L1ME3A LINE L1 -825 5321 5014 1350 221 3 13 chr5 37725132 37725430 -165360102 - AluJo SINE Alu -15 297 3 1361 276 62 74 chr5 37725430 37726429 -165359103 - L1ME3A LINE L1 -1132 5014 4032 1657 198 21 3 chr5 37726479 37726807 -165358725 + MER2 DNA MER2_type 7 340 -5 281 343 84 3 chr5 37726808 37727105 -165358427 - L1ME3A LINE L1 -2167 3979 3659 21 0 0 0 chr5 37727284 37727305 -165358227 + AT_rich Low_complexity Low_complexity 1 21 0 1595 210 121 7 chr5 37727555 37728008 -165357524 - MLT1D LTR MaLR 0 505 1 1601 103 0 0 chr5 37728157 37728370 -165357162 - AluSg/x SINE Alu -14 298 86 204 312 128 43 chr5 37729139 37729280 -165356252 + L3 LINE CR1 1416 1568 -9 805 234 83 40 chr5 37730059 37730517 -165355015 + MLT1F1 LTR MaLR 7 549 -18 779 200 25 15 chr5 37730517 37730717 -165354815 + MLT1A1 LTR MaLR 1 202 -163 235 252 14 0 chr5 37730956 37731099 -165354433 + (TA)n Simple_repeat Simple_repeat 2 146 0 360 125 0 0 chr5 37731107 37731169 -165354363 + MLT2B3 LTR ERVL 403 554 0 181 309 0 0 chr5 37731239 37731281 -165354251 - MIR SINE MIR -218 44 3 235 307 0 0 chr5 37731564 37731652 -165353880 - L1MC4 LINE L1 -1340 6702 6615 252 177 0 97 chr5 37731675 37731737 -165353795 + MLT2B1 LTR ERVL 465 520 0 591 195 9 18 chr5 37732124 37732237 -165353295 - MER45 DNA AcHobo -1468 113 2 241 389 50 27 chr5 37732795 37733055 -165352477 - L2 LINE L2 -840 2474 2209 255 289 0 24 chr5 37733137 37733220 -165352312 + GA-rich Low_complexity Low_complexity 2 82 0 221 0 35 0 chr5 37734345 37734374 -165351158 + (GAA)n Simple_repeat Simple_repeat 2 31 0 44 63 0 0 chr5 37734753 37734832 -165350700 + AT_rich Low_complexity Low_complexity 1 79 0 37 0 0 0 chr5 37734984 37735021 -165350511 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr5 37735030 37735063 -165350469 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr5 37735325 37735346 -165350186 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr5 37735395 37735417 -165350115 + (T)n Simple_repeat Simple_repeat 1 22 0 1889 141 20 0 chr5 37735769 37736106 -165349426 + AluSx SINE Alu 1 343 0 520 126 0 29 chr5 37736107 37736210 -165349322 + (GGGAA)n Simple_repeat Simple_repeat 5 104 0 315 239 0 0 chr5 37736664 37736731 -165348801 + MLT1A1 LTR MaLR 296 362 -3 195 42 0 0 chr5 37737039 37737063 -165348469 + (TC)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr5 37737994 37738017 -165347515 + AT_rich Low_complexity Low_complexity 1 23 0 2126 260 29 94 chr5 37739464 37740313 -165345219 + MER21B LTR ERV1 13 806 -57 2221 107 0 0 chr5 37741222 37741522 -165344010 - AluSg SINE Alu -10 300 1 252 0 0 0 chr5 37741604 37741632 -165343900 + (CA)n Simple_repeat Simple_repeat 1 28 0 719 126 42 21 chr5 37742001 37742144 -165343388 - L1MA9 LINE L1 -6 6306 6161 2258 69 3 50 chr5 37742412 37742729 -165342803 + AluY SINE Alu 4 305 -6 285 372 122 21 chr5 37743659 37744084 -165341448 + L3 LINE CR1 584 1051 -526 216 0 0 0 chr5 37744616 37744640 -165340892 + (TA)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr5 37744639 37744662 -165340870 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 1400 201 80 6 chr5 37744662 37745044 -165340488 - MLT2B1 LTR ERVL -53 467 2 189 0 0 0 chr5 37745386 37745407 -165340125 + (A)n Simple_repeat Simple_repeat 1 21 0 303 293 100 35 chr5 37746036 37746295 -165339237 - L1ME4a LINE L1 -245 5876 5601 21 0 0 0 chr5 37746851 37746872 -165338660 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr5 37746971 37747000 -165338532 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr5 37747692 37747716 -165337816 + AT_rich Low_complexity Low_complexity 1 24 0 195 283 145 71 chr5 37747716 37747999 -165337533 - L2 LINE L2 -797 2517 2214 249 33 0 0 chr5 37748616 37748646 -165336886 + (CA)n Simple_repeat Simple_repeat 2 31 0 2012 125 3 10 chr5 37748718 37749006 -165336526 + AluSq SINE Alu 3 288 -25 243 218 0 0 chr5 37749130 37749185 -165336347 + (TA)n Simple_repeat Simple_repeat 1 55 0 375 23 0 0 chr5 37749185 37749229 -165336303 + (CA)n Simple_repeat Simple_repeat 2 45 0 1554 148 41 0 chr5 37749236 37749506 -165336026 + Tigger3(Golem) DNA MER2_type 2148 2428 -601 263 340 0 0 chr5 37749608 37749714 -165335818 + G-rich Low_complexity Low_complexity 1 106 0 895 265 123 19 chr5 37749827 37750186 -165335346 + L1MD2 LINE L1 5714 6109 -250 1078 281 109 38 chr5 37750186 37750318 -165335214 + MLT1D LTR MaLR 2 123 -382 1958 131 33 7 chr5 37750318 37750623 -165334909 + AluSq SINE Alu 1 313 0 1078 281 109 38 chr5 37750623 37750939 -165334593 + MLT1D LTR MaLR 123 482 -23 990 212 19 35 chr5 37750945 37751204 -165334328 + L1MD2 LINE L1 6104 6358 -1 1922 293 75 19 chr5 37751223 37752277 -165333255 + L1ME3A LINE L1 5038 6157 -13 4164 187 36 23 chr5 37753194 37753617 -165331915 + L1MB1 LINE L1 5032 5448 -720 2249 97 0 0 chr5 37753617 37753915 -165331617 + AluSx SINE Alu 1 298 -14 4164 187 36 23 chr5 37753915 37754607 -165330925 + L1MB1 LINE L1 5448 6163 -5 1597 159 91 14 chr5 37754616 37754967 -165330565 + L1MA6 LINE L1 5866 6243 -57 302 77 0 0 chr5 37754967 37755006 -165330526 + L1MA6 LINE L1 6205 6243 -57 364 198 35 0 chr5 37755009 37755095 -165330437 + L1MA6 LINE L1 6208 6296 -4 24 0 0 0 chr5 37755787 37755811 -165329721 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr5 37756205 37756227 -165329305 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr5 37756387 37756426 -165329106 + AT_rich Low_complexity Low_complexity 1 39 0 894 246 84 78 chr5 37756686 37757173 -165328359 + MLT1F1 LTR MaLR 3 492 -75 1680 180 14 34 chr5 37758347 37758697 -165326835 + MER7A DNA MER2_type 1 341 -5 363 23 0 0 chr5 37758808 37758852 -165326680 + (TC)n Simple_repeat Simple_repeat 2 45 0 28 0 0 0 chr5 37759326 37759354 -165326178 + AT_rich Low_complexity Low_complexity 1 28 0 226 240 62 31 chr5 37760609 37760705 -165324827 + MER112 DNA MER1_type 66 164 -96 234 139 10 50 chr5 37760974 37761075 -165324457 + (TA)n Simple_repeat Simple_repeat 1 97 0 32 0 0 0 chr5 37761356 37761388 -165324144 + AT_rich Low_complexity Low_complexity 1 32 0 30 69 0 0 chr5 37763179 37763237 -165322295 + AT_rich Low_complexity Low_complexity 1 58 0 239 366 79 6 chr5 37763266 37763430 -165322102 + L2 LINE L2 2530 2705 -609 435 310 48 48 chr5 37763632 37763900 -165321632 + L2 LINE L2 2991 3258 -55 1952 185 29 0 chr5 37763991 37764337 -165321195 + MLT1A1 LTR MaLR 10 365 0 1692 180 0 22 chr5 37764469 37764780 -165320752 + AluJo SINE Alu 1 304 -8 207 373 56 32 chr5 37766709 37766835 -165318697 - MIR SINE MIR -129 133 5 24 32 0 0 chr5 37767347 37767378 -165318154 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr5 37767751 37767772 -165317760 + AT_rich Low_complexity Low_complexity 1 21 0 430 323 89 21 chr5 37768233 37768515 -165317017 + L1MDa LINE L1 35 335 -6205 330 26 0 0 chr5 37768935 37768974 -165316558 + (TG)n Simple_repeat Simple_repeat 2 40 0 678 222 54 68 chr5 37770579 37770800 -165314732 - MER20 DNA MER1_type -1 218 1 26 0 0 0 chr5 37771179 37771205 -165314327 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr5 37771852 37771874 -165313658 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr5 37771944 37771965 -165313567 + AT_rich Low_complexity Low_complexity 1 21 0 31 44 0 0 chr5 37772069 37772114 -165313418 + AT_rich Low_complexity Low_complexity 1 45 0 255 321 93 56 chr5 37773737 37773952 -165311580 + MIR SINE MIR 29 251 -11 192 40 0 0 chr5 37774690 37774715 -165310817 + (TG)n Simple_repeat Simple_repeat 2 26 0 273 345 65 65 chr5 37774768 37775011 -165310521 + L2 LINE L2 1163 1409 -1905 2198 39 14 21 chr5 37775011 37775337 -165310195 + AluY SINE Alu 1 324 0 273 345 65 65 chr5 37775337 37775478 -165310054 + L2 LINE L2 1408 1548 -1766 266 297 65 65 chr5 37776511 37776774 -165308758 + HAL1 LINE L1 1405 1667 -840 306 0 0 0 chr5 37776813 37776847 -165308685 + (CA)n Simple_repeat Simple_repeat 2 35 0 364 169 45 0 chr5 37776945 37777034 -165308498 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 22 35 0 0 chr5 37777737 37777766 -165307766 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr5 37778441 37778469 -165307063 + AT_rich Low_complexity Low_complexity 1 28 0 2064 104 38 0 chr5 37778598 37778886 -165306646 - AluY SINE Alu -12 299 1 23 33 0 0 chr5 37779112 37779142 -165306390 + AT_rich Low_complexity Low_complexity 1 30 0 386 344 38 6 chr5 37779801 37779961 -165305571 - L2 LINE L2 -296 3017 2853 873 231 165 42 chr5 37779961 37780284 -165305248 + MLT1A1 LTR MaLR 1 424 -2 1410 316 70 33 chr5 37780297 37781124 -165304408 - L2 LINE L2 -467 2847 1990 2576 175 10 0 chr5 37781327 37781835 -165303697 - L1 LINE L1 -1639 4507 3995 288 0 0 0 chr5 37782401 37782433 -165303099 + (CA)n Simple_repeat Simple_repeat 2 33 0 1642 214 63 41 chr5 37782670 37783160 -165302372 + MLT1D LTR MaLR 3 503 -2 222 91 0 0 chr5 37785247 37785280 -165300252 + (TG)n Simple_repeat Simple_repeat 2 34 0 183 309 27 45 chr5 37786642 37786752 -165298780 - MIR SINE MIR -97 165 58 1825 120 49 0 chr5 37787105 37787371 -165298161 - AluSx SINE Alu -5 307 29 421 367 146 27 chr5 37787442 37787957 -165297575 + L2 LINE L2 2402 2977 -337 229 346 0 0 chr5 37788916 37788997 -165296535 + CT-rich Low_complexity Low_complexity 1 81 0 220 320 69 40 chr5 37789986 37790161 -165295371 + MIR SINE MIR 9 188 -74 441 261 35 74 chr5 37790619 37790902 -165294630 - L1ME3A LINE L1 -166 6004 5733 23 0 0 0 chr5 37790921 37790944 -165294588 + AT_rich Low_complexity Low_complexity 1 23 0 235 218 73 0 chr5 37790965 37791020 -165294512 + L1ME LINE L1 5731 5789 -381 919 248 103 0 chr5 37791070 37791332 -165294200 - L1ME3A LINE L1 -448 5722 5434 1730 106 23 8 chr5 37792060 37792325 -165293207 - L1PA13 LINE L1 0 6163 5895 27 92 0 0 chr5 37793096 37793172 -165292360 + AT_rich Low_complexity Low_complexity 1 76 0 22 35 0 0 chr5 37793562 37793591 -165291941 + AT_rich Low_complexity Low_complexity 1 29 0 34 42 0 0 chr5 37793661 37793709 -165291823 + AT_rich Low_complexity Low_complexity 1 48 0 9682 111 30 2 chr5 37794060 37796197 -165289335 - L1PA3 LINE L1 0 6155 3982 182 194 0 0 chr5 37796449 37796485 -165289047 + L2 LINE L2 3217 3252 -20 250 296 0 0 chr5 37798086 37798157 -165287375 + CT-rich Low_complexity Low_complexity 1 71 0 25 0 0 0 chr5 37798670 37798695 -165286837 + AT_rich Low_complexity Low_complexity 1 25 0 365 309 111 10 chr5 37798977 37799184 -165286348 - L1ME LINE L1 -331 5790 5563 807 188 7 0 chr5 37799204 37799353 -165286179 - AluJb SINE Alu -2 310 161 1245 147 0 76 chr5 37799353 37799577 -165285955 - AluJb SINE Alu -101 211 5 1218 157 9 26 chr5 37799790 37800020 -165285512 + THE1C LTR MaLR 1 226 -149 803 146 35 64 chr5 37800130 37800246 -165285286 + THE1C LTR MaLR 210 321 -54 2537 98 0 46 chr5 37800246 37800635 -165284897 - THE1C LTR MaLR -2 373 3 803 146 35 64 chr5 37800635 37800689 -165284843 + THE1C LTR MaLR 321 375 0 1893 135 31 7 chr5 37801223 37801512 -165284020 - AluSq SINE Alu -17 296 1 195 100 0 0 chr5 37801602 37801632 -165283900 + (T)n Simple_repeat Simple_repeat 1 30 0 1746 132 9 64 chr5 37802513 37802594 -165282938 + Tigger3(Golem) DNA MER2_type 1 85 -1146 2255 76 7 20 chr5 37802594 37802898 -165282634 + AluSg SINE Alu 1 300 -10 1746 132 9 64 chr5 37802898 37803142 -165282390 + Tigger3(Golem) DNA MER2_type 85 308 -923 207 256 0 0 chr5 37803148 37803191 -165282341 + (TG)n Simple_repeat Simple_repeat 1 43 0 241 279 23 0 chr5 37803191 37803277 -165282255 - L1MC4 LINE L1 -1340 6702 6615 214 211 0 0 chr5 37803281 37803319 -165282213 + (TA)n Simple_repeat Simple_repeat 1 38 0 2346 247 97 34 chr5 37803911 37805295 -165280237 + L1MD2 LINE L1 647 2112 -4294 2407 215 35 15 chr5 37805345 37806000 -165279532 + L1MD2 LINE L1 3780 4447 -1959 2186 237 79 23 chr5 37806013 37806177 -165279355 + L1MD2 LINE L1 5227 5380 -1239 1659 147 12 77 chr5 37806177 37806503 -165279029 + AluSx SINE Alu 1 305 -7 2186 237 79 23 chr5 37806503 37807187 -165278345 + L1MD2 LINE L1 5380 6130 -489 957 239 76 40 chr5 37807262 37807563 -165277969 + L1MD2 LINE L1 6293 6604 -15 1195 122 17 0 chr5 37808520 37808701 -165276831 + L1PB1 LINE L1 5608 5791 -360 205 125 21 21 chr5 37808769 37808817 -165276715 + (TA)n Simple_repeat Simple_repeat 2 49 0 2327 123 6 3 chr5 37808882 37809239 -165276293 + L1PB1 LINE L1 5787 6144 -7 2012 137 3 3 chr5 37810758 37811065 -165274467 - AluY SINE Alu -4 307 1 24 0 0 0 chr5 37811926 37811950 -165273582 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr5 37812183 37812209 -165273323 + AT_rich Low_complexity Low_complexity 1 26 0 217 228 18 0 chr5 37813454 37813511 -165272021 + (CA)n Simple_repeat Simple_repeat 1 58 0 2336 136 22 3 chr5 37813640 37814008 -165271524 + THE1C LTR MaLR 1 375 0 317 246 48 12 chr5 37816007 37816174 -165269358 + (TA)n Simple_repeat Simple_repeat 1 173 0 369 293 75 15 chr5 37816927 37817060 -165268472 + MLT1J1 LTR MaLR 193 333 -113 189 0 0 0 chr5 37817196 37817217 -165268315 + (A)n Simple_repeat Simple_repeat 1 21 0 256 286 29 0 chr5 37817341 37817411 -165268121 + L2 LINE L2 3201 3272 0 237 336 0 26 chr5 37817880 37817996 -165267536 + GA-rich Low_complexity Low_complexity 4 116 0 30 27 0 0 chr5 37818095 37818132 -165267400 + AT_rich Low_complexity Low_complexity 1 37 0 3226 169 64 3 chr5 37818521 37819159 -165266373 - Tigger3(Golem) DNA MER2_type 0 3029 2353 408 250 52 15 chr5 37819346 37819482 -165266050 + Charlie1 DNA MER1_type 2621 2761 0 1283 267 59 24 chr5 37820504 37820973 -165264559 + MLT1G LTR MaLR 35 588 -2 1602 162 40 0 chr5 37821872 37822171 -165263361 + AluSx SINE Alu 1 310 0 931 186 104 0 chr5 37822433 37822654 -165262878 - Tigger2 DNA MER2_type 0 2718 2475 3549 166 45 31 chr5 37822723 37823004 -165262528 - Tigger2 DNA MER2_type -1971 747 471 1816 123 8 0 chr5 37823004 37823264 -165262268 - AluSg1 SINE Alu -8 301 40 3549 166 45 31 chr5 37823264 37823719 -165261813 - Tigger2 DNA MER2_type -2247 471 1 189 159 0 0 chr5 37824347 37824391 -165261141 + (TA)n Simple_repeat Simple_repeat 1 44 0 582 208 30 42 chr5 37824668 37824836 -165260696 - LTR40a LTR ERVL -1 518 353 389 276 172 23 chr5 37824837 37825011 -165260521 - MIR SINE MIR -61 201 2 467 229 37 0 chr5 37826319 37826428 -165259104 - MIR SINE MIR -37 225 113 569 342 7 48 chr5 37827530 37827802 -165257730 - MIR SINE MIR 0 262 2 2227 301 96 75 chr5 37829911 37831532 -165254000 + L2 LINE L2 690 2344 -970 214 339 59 17 chr5 37831975 37832093 -165253439 + MIR3 SINE MIR 55 177 -31 32 0 0 0 chr5 37832776 37832808 -165252724 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr5 37832863 37832886 -165252646 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr5 37834180 37834201 -165251331 + AT_rich Low_complexity Low_complexity 1 21 0 1768 162 59 0 chr5 37834652 37834992 -165250540 - MER46B DNA MER2_type -1 235 1 21 0 0 0 chr5 37836143 37836164 -165249368 + AT_rich Low_complexity Low_complexity 1 21 0 1970 112 49 0 chr5 37836676 37836962 -165248570 - AluSx SINE Alu -12 300 1 23 0 0 0 chr5 37836999 37837022 -165248510 + AT_rich Low_complexity Low_complexity 1 23 0 229 343 99 95 chr5 37838070 37838502 -165247030 - L2 LINE L2 -2 3270 2837 1152 259 29 26 chr5 37838823 37839174 -165246358 + MLT1A2 LTR MaLR 23 374 0 246 386 64 37 chr5 37839348 37839832 -165245700 - L2 LINE L2 -980 2334 1838 191 188 0 47 chr5 37841901 37841965 -165243567 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 1091 96 19 201 chr5 37842714 37843028 -165242504 - Tigger2 DNA MER2_type -1 2717 2461 213 226 0 0 chr5 37843128 37843181 -165242351 + T-rich Low_complexity Low_complexity 1 53 0 209 243 108 0 chr5 37843358 37843432 -165242100 + L2 LINE L2 2410 2491 -823 675 290 123 53 chr5 37843432 37844077 -165241455 + L2 LINE L2 2618 3309 -4 215 368 61 0 chr5 37844060 37844174 -165241358 - L3 LINE CR1 -729 848 728 * 2119 40 0 0 chr5 37845796 37846047 -165239485 - AluY SINE Alu -17 294 44 349 290 99 83 chr5 37847158 37847482 -165238050 + L1M2 LINE L1 799 1127 -5722 288 0 0 0 chr5 37848527 37848559 -165236973 + (TG)n Simple_repeat Simple_repeat 2 33 0 1279 146 135 22 chr5 37848601 37848875 -165236657 - AluSx SINE Alu -7 305 1 522 366 160 13 chr5 37848901 37849352 -165236180 + L2 LINE L2 1851 2367 -947 1164 188 13 4 chr5 37849493 37849727 -165235805 - L1P LINE L1 -1664 4482 4247 398 222 65 81 chr5 37849941 37850126 -165235406 + MIR SINE MIR 66 247 -15 2667 170 12 12 chr5 37851672 37852184 -165233348 - L1PA13 LINE L1 0 6163 5652 1161 148 27 0 chr5 37853960 37854143 -165231389 - MER58B DNA MER1_type 0 341 154 1481 128 144 109 chr5 37854250 37854618 -165230914 - MSTA LTR MaLR -47 381 1 8158 176 6 45 chr5 37854618 37856260 -165229272 - MSTA-int LTR MaLR 0 1580 3 1936 153 137 8 chr5 37856262 37856641 -165228891 - MSTA LTR MaLR 0 428 1 2526 39 0 10 chr5 37856922 37857229 -165228303 + AluY SINE Alu 1 304 -7 22 35 0 0 chr5 37858888 37858917 -165226615 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr5 37858947 37858970 -165226562 + AT_rich Low_complexity Low_complexity 1 23 0 304 337 46 40 chr5 37859777 37859952 -165225580 + MIR SINE MIR 28 203 -59 1922 102 11 0 chr5 37860266 37860531 -165225001 + AluY SINE Alu 44 311 0 31 26 0 0 chr5 37860548 37860586 -165224946 + AT_rich Low_complexity Low_complexity 1 38 0 213 320 13 115 chr5 37861014 37861170 -165224362 - MIR SINE MIR -9 253 114 412 136 0 0 chr5 37861664 37861730 -165223802 + MADE1 DNA Mariner 13 78 -2 180 111 0 0 chr5 37863285 37863312 -165222220 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2402 129 17 21 chr5 37864797 37865216 -165220316 - L1PA12 LINE L1 -7 6161 5745 228 220 17 0 chr5 37865216 37865275 -165220257 - L1P LINE L1 -1623 4523 4464 773 78 0 0 chr5 37865384 37865487 -165220045 - L1PA11 LINE L1 -327 5847 5745 * 817 229 0 19 chr5 37865484 37865694 -165219838 - L1 LINE L1 -1620 4526 4321 * 7014 163 26 17 chr5 37865692 37867017 -165218515 + L1P LINE L1 3145 4482 -1664 310 283 79 7 chr5 37867159 37867311 -165218221 - L2 LINE L2 -947 2367 2205 1200 219 78 12 chr5 37869476 37869796 -165215736 + MER58B DNA MER1_type 1 341 0 401 270 92 29 chr5 37870328 37870502 -165215030 - L1MEd LINE L1 -5354 765 581 30 59 0 0 chr5 37871070 37871121 -165214411 + AT_rich Low_complexity Low_complexity 1 51 0 202 88 29 0 chr5 37871149 37871183 -165214349 + (TA)n Simple_repeat Simple_repeat 2 36 0 202 194 28 0 chr5 37871350 37871422 -165214110 + (TA)n Simple_repeat Simple_repeat 1 74 0 1944 128 7 0 chr5 37871439 37871720 -165213812 + AluSq SINE Alu 1 313 0 271 0 0 0 chr5 37871720 37871750 -165213782 + (TAAA)n Simple_repeat Simple_repeat 1 140 0 310 244 117 31 chr5 37871835 37872126 -165213406 - L1MC5 LINE L1 -195 7766 7451 471 152 0 0 chr5 37873221 37873313 -165212219 - L1MB3 LINE L1 -3 6180 6089 455 226 10 0 chr5 37873325 37873427 -165212105 + FLAM_A SINE Alu 12 114 -28 315 113 0 0 chr5 37873427 37873480 -165212052 + (CA)n Simple_repeat Simple_repeat 1 53 0 287 242 99 0 chr5 37873481 37873572 -165211960 - L1MB3 LINE L1 -80 6103 6004 3278 101 0 4 chr5 37874489 37874958 -165210574 - L1P LINE L1 -1296 4850 4382 4475 57 3 7 chr5 37874958 37875701 -165209831 + L1PA7 LINE L1 5565 6315 0 620 142 21 21 chr5 37875711 37875852 -165209680 + GA-rich Low_complexity Low_complexity 4 144 0 246 239 47 47 chr5 37876017 37876230 -165209302 + L1ME LINE L1 801 1013 -5057 342 0 0 0 chr5 37876537 37876575 -165208957 + (TG)n Simple_repeat Simple_repeat 2 39 0 2024 113 0 33 chr5 37877771 37878073 -165207459 + AluSg SINE Alu 6 297 -13 594 111 44 0 chr5 37878221 37878311 -165207221 + Tigger3(Golem) DNA MER2_type 2800 2893 -136 407 253 23 0 chr5 37878330 37878504 -165207028 + (TA)n Simple_repeat Simple_repeat 1 178 0 189 339 123 0 chr5 37878666 37878796 -165206736 + MIR SINE MIR 34 179 -83 235 351 39 29 chr5 37878937 37879145 -165206387 + L2 LINE L2 2878 3087 -226 1987 142 7 0 chr5 37879314 37879609 -165205923 - AluSq SINE Alu -15 298 2 1920 210 50 17 chr5 37879785 37880247 -165205285 - L1MB4 LINE L1 -52 6128 5652 379 301 20 55 chr5 37880571 37880770 -165204762 + LTR33 LTR ERVL 330 521 0 2220 58 27 7 chr5 37881404 37881697 -165203835 - AluY SINE Alu -12 299 1 1094 189 16 0 chr5 37881860 37882050 -165203482 - MLT1B LTR MaLR -6 384 192 1212 52 0 0 chr5 37882091 37882245 -165203287 - L1PA4 LINE L1 -3 6152 5999 327 255 1 61 chr5 37882246 37882362 -165203170 - MLT1B LTR MaLR -164 226 125 1817 116 0 4 chr5 37883462 37883713 -165201819 + AluSx SINE Alu 2 251 -61 350 301 44 7 chr5 37884419 37884555 -165200977 + MLT1J2 LTR MaLR 8 148 -302 255 125 0 0 chr5 37884561 37884601 -165200931 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 2263 86 20 0 chr5 37884601 37884904 -165200628 - AluSc SINE Alu 0 309 1 271 89 0 67 chr5 37885598 37885643 -165199889 + AluSp/q SINE Alu 162 203 -100 921 84 0 0 chr5 37885655 37885802 -165199730 + AluSc SINE Alu 163 309 0 283 282 82 9 chr5 37886592 37886702 -165198830 - MARNA DNA Mariner -342 244 127 408 325 113 22 chr5 37887217 37887491 -165198041 - L2 LINE L2 -1102 2212 1914 1488 242 18 45 chr5 37887923 37888191 -165197341 - MLT1A2 LTR MaLR -1 373 116 2303 91 0 0 chr5 37888191 37888478 -165197054 - AluSc SINE Alu -3 306 20 1488 242 18 45 chr5 37888478 37888589 -165196943 - MLT1A2 LTR MaLR -258 116 4 488 127 13 0 chr5 37888892 37888971 -165196561 - MADE1 DNA Mariner 0 80 1 1677 114 4 30 chr5 37889186 37889449 -165196083 + AluSx SINE Alu 40 295 -17 336 24 0 0 chr5 37889930 37889971 -165195561 + (TG)n Simple_repeat Simple_repeat 2 42 0 1153 135 23 37 chr5 37891651 37891866 -165193666 + L1PA13 LINE L1 5944 6155 -8 267 285 16 24 chr5 37892343 37892466 -165193066 + HAL1 LINE L1 2228 2349 -158 21 0 0 0 chr5 37893790 37893811 -165191721 + AT_rich Low_complexity Low_complexity 1 21 0 303 154 0 0 chr5 37894874 37894939 -165190593 + T-rich Low_complexity Low_complexity 1 65 0 2384 59 7 7 chr5 37895116 37895419 -165190113 - AluY SINE Alu -8 303 1 273 411 0 0 chr5 37895509 37895621 -165189911 + L2 LINE L2 3190 3301 -12 194 289 114 61 chr5 37895904 37896018 -165189514 - L2 LINE L2 -1 3312 3193 527 83 0 0 chr5 37897337 37897409 -165188123 - L1P LINE L1 -2590 3556 3485 336 284 8 16 chr5 37897560 37897687 -165187845 + Tigger1 DNA MER2_type 275 400 -2018 2153 104 51 31 chr5 37897687 37898041 -165187491 - THE1B LTR MaLR -3 361 1 11357 98 5 6 chr5 37898041 37899622 -165185910 - THE1B-int LTR MaLR 0 1580 1 2069 114 99 15 chr5 37899622 37899955 -165185577 - THE1B LTR MaLR 0 364 4 * 2344 188 27 6 chr5 37899955 37900419 -165185113 + Tigger1 DNA MER2_type 401 874 -1544 255 294 5 15 chr5 37900448 37900563 -165184969 + G-rich Low_complexity Low_complexity 1 113 0 284 289 5 43 chr5 37900725 37900912 -165184620 + GA-rich Low_complexity Low_complexity 1 180 0 202 338 54 0 chr5 37901717 37901791 -165183741 - L2 LINE L2 -38 3275 3198 22 35 0 0 chr5 37902248 37902277 -165183255 + AT_rich Low_complexity Low_complexity 1 29 0 2229 113 3 0 chr5 37902557 37902868 -165182664 + AluSx SINE Alu 1 312 0 185 0 0 39 chr5 37902877 37902903 -165182629 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 477 309 26 0 chr5 37902938 37903090 -165182442 - MER5A DNA MER1_type -3 186 31 23 68 0 0 chr5 37903517 37903561 -165181971 + AT_rich Low_complexity Low_complexity 1 44 0 301 123 31 0 chr5 37903856 37903921 -165181611 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 356 323 83 0 chr5 37904203 37904395 -165181137 - LTR33 LTR ERVL -313 208 1 3689 106 44 13 chr5 37905072 37905685 -165179847 + L1MA1 LINE L1 5671 6302 0 249 257 43 0 chr5 37907581 37907651 -165177881 - L2 LINE L2 0 3272 3200 39 74 0 0 chr5 37907779 37907860 -165177672 + AT_rich Low_complexity Low_complexity 1 81 0 500 256 28 56 chr5 37908228 37908408 -165177124 - MIR SINE MIR -25 237 63 859 168 0 0 chr5 37909420 37909551 -165175981 - FLAM_C SINE Alu -12 131 1 2236 103 3 0 chr5 37910082 37910384 -165175148 + AluSg SINE Alu 1 303 -7 406 358 13 0 chr5 37912351 37912502 -165173030 + MER91A DNA MER1_type 9 161 -35 990 218 14 23 chr5 37912665 37912881 -165172651 + MER20 DNA MER1_type 1 214 -5 234 0 0 0 chr5 37912915 37912941 -165172591 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2325 53 3 0 chr5 37912941 37913226 -165172306 - AluY SINE Alu -25 286 1 288 120 0 0 chr5 37915098 37915148 -165170384 + (TG)n Simple_repeat Simple_repeat 2 51 0 3084 221 26 13 chr5 37915699 37916839 -165168693 + L1M3 LINE L1 4564 5724 -444 1798 161 129 23 chr5 37916839 37917225 -165168307 + MSTA LTR MaLR 2 428 0 1795 160 0 0 chr5 37917357 37917639 -165167893 - AluSc SINE Alu -27 282 1 22 35 0 0 chr5 37919386 37919415 -165166117 + AT_rich Low_complexity Low_complexity 1 29 0 3228 168 41 3 chr5 37919730 37920345 -165165187 + L1PA15 LINE L1 5526 6163 -2 314 133 50 0 chr5 37920701 37920761 -165164771 - MADE1 DNA Mariner 0 80 18 1544 221 77 25 chr5 37920966 37921409 -165164123 + MLT1C LTR MaLR 1 466 -1 273 197 0 16 chr5 37921701 37921762 -165163770 + Tigger1 DNA MER2_type 1 60 -2358 427 139 25 25 chr5 37921793 37921872 -165163660 + Tigger1 DNA MER2_type 55 133 -2285 250 222 0 19 chr5 37921868 37921922 -165163610 + Tigger1 DNA MER2_type 273 325 -2093 * 3967 192 29 8 chr5 37922054 37922851 -165162681 + Tigger1 DNA MER2_type 1605 2418 0 182 349 0 0 chr5 37923179 37923242 -165162290 - MIR SINE MIR -16 246 184 483 283 90 49 chr5 37923345 37923755 -165161777 + MLT1L LTR MaLR 182 608 -7 1976 141 0 28 chr5 37925246 37925565 -165159967 + AluSg SINE Alu 1 310 0 186 43 0 0 chr5 37925711 37925734 -165159798 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1621 173 0 61 chr5 37925738 37926068 -165159464 + AluJb SINE Alu 1 310 -2 1501 159 3 65 chr5 37926194 37926503 -165159029 + AluJo SINE Alu 1 290 -22 1942 133 3 7 chr5 37928050 37928344 -165157188 - AluSx SINE Alu -17 295 3 244 196 0 0 chr5 37928673 37928719 -165156813 - MADE1 DNA Mariner -34 46 1 22 0 0 0 chr5 37929216 37929238 -165156294 + AT_rich Low_complexity Low_complexity 1 22 0 1795 186 23 23 chr5 37929345 37929732 -165155800 + L1MB1 LINE L1 5782 6168 0 323 318 49 88 chr5 37931380 37931685 -165153847 + MLT1I LTR MaLR 94 386 -23 312 27 0 0 chr5 37931926 37931963 -165153569 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1646 202 53 43 chr5 37932211 37932607 -165152925 - MLT2D LTR ERVL -14 400 1 21 89 0 0 chr5 37933406 37933462 -165152070 + AT_rich Low_complexity Low_complexity 1 56 0 1890 144 0 3 chr5 37933887 37934201 -165151331 - AluSq SINE Alu 0 313 1 248 333 0 0 chr5 37934208 37934298 -165151234 - L1M4 LINE L1 -1405 4741 4652 781 229 139 40 chr5 37934313 37934940 -165150592 - L1MC3 LINE L1 -7 8196 2008 461 259 46 0 chr5 37934954 37935062 -165150470 - MLT2D LTR ERVL -115 299 187 296 165 0 114 chr5 37935062 37935141 -165150391 - L1MC3 LINE L1 -4571 1993 1924 366 225 12 88 chr5 37935152 37935187 -165150345 - L1MC3 LINE L1 -4757 1807 1771 2297 139 14 3 chr5 37935187 37935547 -165149985 - THE1B LTR MaLR 0 364 1 366 225 12 88 chr5 37935547 37935671 -165149861 - L1MC3 LINE L1 -4793 1771 1660 297 291 65 30 chr5 37936001 37936230 -165149302 - L1MC3 LINE L1 -5480 671 392 5853 93 9 0 chr5 37936232 37937096 -165148436 - L1P LINE L1 -2657 3489 2618 4687 105 1 3 chr5 37937096 37937782 -165147750 + L1P LINE L1 1929 2613 -3533 315 184 158 35 chr5 37937882 37937996 -165147536 - L3 LINE CR1 -864 713 586 256 288 114 15 chr5 37938050 37938182 -165147350 - MIR SINE MIR -13 249 105 298 359 21 14 chr5 37938247 37938389 -165147143 - L3 LINE CR1 -1012 565 423 186 296 235 0 chr5 37938604 37938685 -165146847 + MIR SINE MIR 45 144 -64 30 69 0 0 chr5 37939763 37939821 -165145711 + AT_rich Low_complexity Low_complexity 1 58 0 1860 182 0 0 chr5 37939879 37940187 -165145345 + AluSx SINE Alu 3 310 -2 1184 221 16 118 chr5 37940189 37940510 -165145022 + MLT1C LTR MaLR 103 467 0 1681 204 36 11 chr5 37940513 37940926 -165144606 + MLT1C-int LTR MaLR 3 427 -1017 276 30 0 0 chr5 37940931 37940964 -165144568 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1411 224 0 4 chr5 37940971 37941248 -165144284 - AluJo SINE Alu -36 276 1 1770 248 42 56 chr5 37941250 37941754 -165143778 + MLT1C-int LTR MaLR 441 937 -434 16670 89 6 5 chr5 37942069 37944450 -165141082 - L1P LINE L1 -2848 3298 917 1885 83 17 31 chr5 37944447 37944735 -165140797 + L1P LINE L1 3499 3782 -2364 * 521 235 108 20 chr5 37944860 37945064 -165140468 + THE1C LTR MaLR 154 375 0 407 294 81 54 chr5 37945182 37945478 -165140054 - MLT1I LTR MaLR 0 409 106 285 188 0 0 chr5 37945539 37945587 -165139945 - MLT2B1 LTR ERVL 0 397 350 1166 248 33 97 chr5 37945644 37946035 -165139497 - MLT2B1 LTR ERVL -48 384 1 198 343 27 41 chr5 37947256 37947329 -165138203 + MIR SINE MIR 44 115 -93 313 176 27 0 chr5 37947902 37947976 -165137556 + (TA)n Simple_repeat Simple_repeat 1 76 0 11442 98 2 4 chr5 37949914 37951671 -165133861 + L1P3 LINE L1 3752 5505 -649 515 118 0 0 chr5 37951671 37951755 -165133777 + L1PA7 LINE L1 6070 6154 0 21 161 0 0 chr5 37951925 37951956 -165133576 + AT_rich Low_complexity Low_complexity 1 31 0 241 322 67 33 chr5 37952534 37952624 -165132908 - L2 LINE L2 -238 3075 2983 717 214 28 8 chr5 37952671 37952836 -165132696 + MLT1A1 LTR MaLR 216 365 0 1057 317 72 38 chr5 37952842 37953397 -165132135 - L2 LINE L2 -585 2729 2156 199 202 46 0 chr5 37953443 37953552 -165131980 + (TA)n Simple_repeat Simple_repeat 1 114 0 345 348 91 36 chr5 37953553 37953772 -165131760 - L2 LINE L2 -1315 1999 1763 726 22 11 0 chr5 37953772 37953864 -165131668 + L1PA4 LINE L1 6061 6153 -2 345 348 91 36 chr5 37953864 37953897 -165131635 - L2 LINE L2 -1551 1763 1733 1135 226 41 0 chr5 37954094 37954315 -165131217 - Tigger7 DNA MER2_type -503 230 1 980 279 74 7 chr5 37955178 37955475 -165130057 - MLT1E2 LTR MaLR 0 626 310 1261 246 50 52 chr5 37955742 37956001 -165129531 - L1MCa LINE L1 -4944 1482 1224 1318 188 54 44 chr5 37956001 37956299 -165129233 - AluSx SINE Alu -11 301 1 1261 246 50 52 chr5 37956299 37956583 -165128949 - L1MCa LINE L1 -5202 1224 940 579 82 0 103 chr5 37956594 37956691 -165128841 - THE1C LTR MaLR -288 87 1 22 0 0 0 chr5 37957122 37957144 -165128388 + AT_rich Low_complexity Low_complexity 1 22 0 2111 158 11 6 chr5 37957322 37957676 -165127856 - THE1B LTR MaLR -4 360 5 377 320 99 36 chr5 37957733 37958208 -165127324 - L1 LINE L1 -1313 4833 4329 482 115 71 9 chr5 37958395 37958508 -165127024 - L1MA9 LINE L1 -19 6293 6174 518 217 58 7 chr5 37958510 37958648 -165126884 - L1MA9 LINE L1 -237 6075 5931 237 309 93 80 chr5 37960108 37960483 -165125049 + L3 LINE CR1 1193 1572 -5 433 336 102 18 chr5 37960530 37960756 -165124776 - MIR SINE MIR -13 249 5 448 224 9 0 chr5 37961280 37961387 -165124145 + MLT1C-int LTR MaLR 1619 1726 -9 1517 226 100 9 chr5 37961400 37961821 -165123711 + MLT1C LTR MaLR 6 464 -3 39 60 0 0 chr5 37961861 37961928 -165123604 + AT_rich Low_complexity Low_complexity 1 67 0 705 104 17 9 chr5 37962240 37962355 -165123177 - MLT2C2 LTR ERVL -324 140 25 2354 82 0 19 chr5 37962893 37963210 -165122322 - AluY SINE Alu 0 311 1 463 340 65 10 chr5 37963533 37963836 -165121696 - MLT1J1 LTR MaLR -80 370 49 280 240 143 32 chr5 37964106 37964260 -165121272 + L2 LINE L2 1906 2076 -1238 206 412 35 35 chr5 37964808 37964978 -165120554 - MER5A DNA MER1_type -16 173 4 213 316 128 25 chr5 37965055 37965251 -165120281 + L3 LINE CR1 1240 1455 -122 3545 161 30 2 chr5 37965908 37966516 -165119016 - L1PA16 LINE L1 -104 6062 5438 54 16 0 0 chr5 37966885 37966946 -165118586 + AT_rich Low_complexity Low_complexity 1 61 0 645 217 88 77 chr5 37967055 37967327 -165118205 - MLT1B LTR MaLR -113 277 3 207 345 69 0 chr5 37967535 37967622 -165117910 + L2 LINE L2 3209 3301 -12 584 305 145 36 chr5 37967933 37968442 -165117090 + L2 LINE L2 2491 3048 -265 21 0 0 0 chr5 37968490 37968511 -165117021 + AT_rich Low_complexity Low_complexity 1 21 0 2194 228 17 17 chr5 37968746 37969346 -165116186 - L1 LINE L1 -763 5383 4784 509 200 0 30 chr5 37969342 37969477 -165116055 + L1P5 LINE L1 5347 5477 -679 * 21 0 0 0 chr5 37970460 37970481 -165115051 + AT_rich Low_complexity Low_complexity 1 21 0 258 32 0 0 chr5 37970712 37970743 -165114789 + (TA)n Simple_repeat Simple_repeat 2 32 0 228 325 68 17 chr5 37970973 37971090 -165114442 - L2 LINE L2 -1758 1556 1434 288 135 0 58 chr5 37973072 37973176 -165112356 + (TA)n Simple_repeat Simple_repeat 1 98 0 221 287 46 56 chr5 37973199 37973307 -165112225 + L2 LINE L2 2130 2236 -1078 701 287 27 89 chr5 37973313 37973717 -165111815 + L2 LINE L2 2359 2737 -577 460 325 58 34 chr5 37973749 37973955 -165111577 + LTR16A LTR ERVL 220 430 -20 259 272 0 18 chr5 37975868 37976037 -165109495 - FRAM SINE Alu 0 166 1 25 0 0 0 chr5 37976151 37976176 -165109356 + GC_rich Low_complexity Low_complexity 1 25 0 2319 79 0 0 chr5 37976995 37977298 -165108234 + L1PA7 LINE L1 5847 6149 -5 2125 120 3 0 chr5 37977348 37977649 -165107883 + AluSx SINE Alu 1 302 -10 24 53 0 0 chr5 37977826 37977864 -165107668 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr5 37977988 37978010 -165107522 + AT_rich Low_complexity Low_complexity 1 22 0 31 88 0 0 chr5 37978432 37978512 -165107020 + AT_rich Low_complexity Low_complexity 1 80 0 483 291 16 48 chr5 37979086 37979275 -165106257 - MIR SINE MIR -1 261 79 1474 162 24 4 chr5 37979306 37979589 -165105943 - AluSx SINE Alu 0 318 31 28 0 0 0 chr5 37979936 37979964 -165105568 + AT_rich Low_complexity Low_complexity 1 28 0 372 123 0 0 chr5 37980153 37980210 -165105322 - Alu SINE Alu -1 300 244 38 22 0 0 chr5 37980475 37980520 -165105012 + AT_rich Low_complexity Low_complexity 1 45 0 184 310 17 0 chr5 37980968 37981026 -165104506 + L2 LINE L2 3198 3256 -16 21 57 0 0 chr5 37982678 37982713 -165102819 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr5 37982756 37982778 -165102754 + AT_rich Low_complexity Low_complexity 1 22 0 2006 185 6 0 chr5 37982823 37983179 -165102353 - MER47A DNA MER2_type -8 358 1 996 229 121 10 chr5 37984276 37984582 -165100950 - MER2 DNA MER2_type -4 340 1 23 0 0 0 chr5 37985616 37985639 -165099893 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr5 37986122 37986156 -165099376 + AT_rich Low_complexity Low_complexity 1 34 0 239 420 57 6 chr5 37986166 37986323 -165099209 + L2 LINE L2 2919 3083 -230 2122 89 0 4 chr5 37986350 37986666 -165098866 - AluSc SINE Alu 0 315 1 2940 171 45 43 chr5 37986676 37987279 -165098253 - L1MC1 LINE L1 0 6333 5730 21 0 0 0 chr5 37987740 37987761 -165097771 + AT_rich Low_complexity Low_complexity 1 21 0 25 99 0 0 chr5 37988514 37988595 -165096937 + AT_rich Low_complexity Low_complexity 1 81 0 24 77 0 0 chr5 37989644 37989696 -165095836 + AT_rich Low_complexity Low_complexity 1 52 0 199 274 96 0 chr5 37989835 37989908 -165095624 - MIR3 SINE MIR -3 205 126 746 178 34 0 chr5 37990608 37990754 -165094778 + L1PB4 LINE L1 6006 6156 0 21 36 0 0 chr5 37992555 37992583 -165092949 + AT_rich Low_complexity Low_complexity 1 28 0 1844 128 0 0 chr5 37992934 37993200 -165092332 + AluY SINE Alu 37 302 -9 21 57 0 0 chr5 37993456 37993491 -165092041 + AT_rich Low_complexity Low_complexity 1 35 0 183 119 34 17 chr5 37993846 37993905 -165091627 + (TA)n Simple_repeat Simple_repeat 2 61 0 40 41 0 0 chr5 37993909 37993958 -165091574 + AT_rich Low_complexity Low_complexity 1 49 0 5088 61 1 2 chr5 37995292 37996434 -165089098 + L1PA5 LINE L1 4730 5870 -284 242 227 68 57 chr5 38049138 38049314 -165036218 + Charlie7 DNA MER1_type 2430 2607 -5 23 68 0 0 chr5 38050052 38050096 -165035436 + AT_rich Low_complexity Low_complexity 1 44 0 337 311 64 13 chr5 38050360 38050626 -165034906 - L2 LINE L2 -382 2931 2593 22 56 0 0 chr5 38051655 38051691 -165033841 + AT_rich Low_complexity Low_complexity 1 36 0 229 315 41 14 chr5 38051831 38051904 -165033628 - L2 LINE L2 -21 3251 3177 221 359 9 0 chr5 38052589 38052695 -165032837 + GA-rich Low_complexity Low_complexity 2 108 0 316 119 0 34 chr5 38053054 38053113 -165032419 - MLT2A1 LTR ERVL 0 453 397 * 2248 75 3 3 chr5 38053110 38053405 -165032127 - MLT2A1 LTR ERVL -149 295 1 1512 227 39 87 chr5 38054955 38055102 -165030430 + MLT2B1 LTR ERVL 1 154 -366 1896 145 50 36 chr5 38055102 38055461 -165030071 + THE1B LTR MaLR 1 364 0 1512 227 39 87 chr5 38055461 38055855 -165029677 + MLT2B1 LTR ERVL 154 516 -4 237 65 0 0 chr5 38056019 38056050 -165029482 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 215 335 148 19 chr5 38056621 38056776 -165028756 - MIR SINE MIR -3 259 85 226 287 33 49 chr5 38056993 38057115 -165028417 - LTR16A1 LTR ERVL -14 443 324 7418 48 5 2 chr5 38057406 38058301 -165027231 + MER11D LTR ERVK 1 897 0 607 220 195 72 chr5 38059726 38059767 -165025765 + MLT1A1 LTR MaLR 7 42 -323 2003 142 20 0 chr5 38059767 38060070 -165025462 + AluSp SINE Alu 1 309 -4 607 220 195 72 chr5 38060070 38060346 -165025186 + MLT1A1 LTR MaLR 42 363 -2 313 253 148 122 chr5 38060407 38060644 -165024888 + MIR SINE MIR 20 262 0 21 0 0 0 chr5 38060849 38060870 -165024662 + AT_rich Low_complexity Low_complexity 1 21 0 206 333 115 27 chr5 38061085 38061268 -165024264 + L2 LINE L2 3113 3311 -2 219 294 184 0 chr5 38062250 38062359 -165023173 + MIR SINE MIR 17 145 -63 1200 333 69 22 chr5 38062527 38063399 -165022133 + L2 LINE L2 2407 3313 0 3795 204 46 39 chr5 38063508 38064748 -165020784 + L1MB3 LINE L1 4907 6175 -8 184 315 8 100 chr5 38064922 38065052 -165020480 - L3 LINE CR1 -1341 236 119 22 0 0 0 chr5 38065354 38065376 -165020156 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr5 38065576 38065619 -165019913 + AT_rich Low_complexity Low_complexity 1 43 0 303 179 0 0 chr5 38065890 38065957 -165019575 + (CAT)n Simple_repeat Simple_repeat 3 69 0 317 288 265 8 chr5 38065970 38066132 -165019400 - MIR SINE MIR -23 239 38 21 57 0 0 chr5 38066925 38066960 -165018572 + AT_rich Low_complexity Low_complexity 1 35 0 512 246 31 0 chr5 38066979 38067109 -165018423 - MIR SINE MIR -69 193 60 235 284 74 0 chr5 38067261 38067356 -165018176 + LTR50 LTR ERVL 1 102 -693 6482 124 10 1 chr5 38068833 38070612 -165014920 - L1PA8A LINE L1 0 6131 4337 6597 129 13 29 chr5 38070612 38071751 -165013781 + L1PA8A LINE L1 3211 4331 -1815 368 263 10 30 chr5 38072147 38072246 -165013286 + 7SK RNA RNA 1 97 -96 21 0 0 0 chr5 38072922 38072943 -165012589 + AT_rich Low_complexity Low_complexity 1 21 0 707 300 27 27 chr5 38073678 38073935 -165011597 - MIR SINE MIR -1 261 5 1959 135 10 3 chr5 38074448 38074751 -165010781 - AluSq SINE Alu -2 311 7 1376 158 108 18 chr5 38075275 38075555 -165009977 + THE1C LTR MaLR 1 305 -70 9690 134 35 5 chr5 38075592 38077125 -165008407 + THE1C-int LTR MaLR 1 1580 0 1941 158 21 34 chr5 38077125 38077505 -165008027 + THE1C LTR MaLR 1 375 0 1641 189 3 10 chr5 38077836 38078138 -165007394 + AluJb SINE Alu 1 300 -12 1296 270 53 20 chr5 38078423 38078875 -165006657 - MLT1C LTR MaLR 0 467 1 210 37 0 0 chr5 38078940 38078967 -165006565 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr5 38079072 38079100 -165006432 + AT_rich Low_complexity Low_complexity 1 28 0 219 226 17 43 chr5 38080092 38080207 -165005325 + T-rich Low_complexity Low_complexity 6 117 0 11314 214 41 31 chr5 38080306 38080356 -165005176 + L1MA4 LINE L1 12 60 -6422 207 0 0 0 chr5 38080356 38080379 -165005153 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 11314 214 41 31 chr5 38080379 38084848 -165000684 + L1MA4 LINE L1 60 4479 -2003 1936 159 48 17 chr5 38084848 38085201 -165000331 - THE1B LTR MaLR 0 364 1 11314 214 41 31 chr5 38085201 38085495 -165000037 + L1MA4 LINE L1 4479 4768 -1714 1640 135 32 97 chr5 38085495 38085896 -164999636 - THE1C LTR MaLR 0 375 1 11314 214 41 31 chr5 38085896 38087291 -164998241 + L1MA4 LINE L1 4768 6422 -60 536 171 9 0 chr5 38087299 38087410 -164998122 + L1MA4 LINE L1 6174 6285 -15 48 77 0 0 chr5 38087421 38087525 -164998007 + AT_rich Low_complexity Low_complexity 1 104 0 21 0 0 0 chr5 38087579 38087600 -164997932 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr5 38087975 38087997 -164997535 + AT_rich Low_complexity Low_complexity 1 22 0 820 187 0 0 chr5 38088462 38088612 -164996920 - Tigger1 DNA MER2_type -3 2415 2266 9573 106 14 31 chr5 38088643 38090145 -164995387 + L1PA13 LINE L1 433 1909 -4237 565 159 40 24 chr5 38090149 38090275 -164995257 - Tigger1 DNA MER2_type -161 2257 2130 * 2295 165 61 57 chr5 38090264 38090773 -164994759 - Tigger1 DNA MER2_type -1665 753 243 2280 204 44 25 chr5 38090773 38091341 -164994191 - L1P LINE L1 -2431 3715 3137 * 5399 171 41 12 chr5 38091340 38092637 -164992895 + L1PA13 LINE L1 4164 5496 -672 641 234 31 42 chr5 38092684 38092876 -164992656 + L1MC3 LINE L1 6920 7109 -676 330 26 0 0 chr5 38092879 38092918 -164992614 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3932 157 8 1 chr5 38092919 38093581 -164991951 + L1PA13 LINE L1 5493 6158 -5 1001 206 36 24 chr5 38093583 38093830 -164991702 - Tigger1 DNA MER2_type -2168 250 1 6710 194 65 18 chr5 38094210 38095962 -164989570 + L1MA3 LINE L1 2629 4297 -3427 2126 144 11 8 chr5 38095962 38096316 -164989216 + THE1A LTR MaLR 1 355 0 6710 194 65 18 chr5 38096316 38099214 -164986318 + L1MA3 LINE L1 4297 7723 -1 255 358 43 12 chr5 38099456 38099618 -164985914 + MER115 DNA AcHobo 1 167 -526 404 341 24 6 chr5 38099752 38099919 -164985613 - MIR SINE MIR -58 204 35 34 42 0 0 chr5 38100415 38100463 -164985069 + AT_rich Low_complexity Low_complexity 1 48 0 3594 94 2 2 chr5 38100534 38101015 -164984517 + THE1B-int LTR MaLR 1100 1580 0 1844 122 0 90 chr5 38101017 38101361 -164984171 + THE1B LTR MaLR 3 315 -49 21 57 0 0 chr5 38101983 38102018 -164983514 + AT_rich Low_complexity Low_complexity 1 35 0 411 330 145 51 chr5 38102373 38102827 -164982705 + L2 LINE L2 2817 3313 0 766 166 0 28 chr5 38105085 38105230 -164980302 - FLAM_C SINE Alu 0 143 3 344 284 72 50 chr5 38105347 38105625 -164979907 + L2 LINE L2 1799 2082 -1232 2477 166 18 0 chr5 38105802 38106249 -164979283 - L1MA8 LINE L1 -22 6269 5815 394 170 149 0 chr5 38106254 38106348 -164979184 + L1MA4 LINE L1 5748 5855 -445 198 0 0 0 chr5 38108085 38108107 -164977425 + (CAT)n Simple_repeat Simple_repeat 3 24 0 2008 80 40 4 chr5 38108773 38109095 -164976437 + AluSq SINE Alu 1 332 0 25 65 0 0 chr5 38110604 38110650 -164974882 + AT_rich Low_complexity Low_complexity 1 46 0 236 283 0 0 chr5 38111034 38111087 -164974445 + (CATA)n Simple_repeat Simple_repeat 3 55 0 460 357 68 51 chr5 38111219 38111689 -164973843 + MLT1H LTR MaLR 2 479 -70 427 232 63 79 chr5 38111691 38111881 -164973651 - L1MEd LINE L1 -4930 1189 1003 927 248 12 28 chr5 38111883 38112137 -164973395 + MLT1A1 LTR MaLR 114 363 -2 335 343 46 29 chr5 38112163 38112363 -164973169 + L1ME LINE L1 1253 1605 -5002 25 65 0 0 chr5 38112456 38112502 -164973030 + AT_rich Low_complexity Low_complexity 1 46 0 4726 182 52 0 chr5 38112510 38113734 -164971798 + L1PA16 LINE L1 4927 6209 0 319 220 61 8 chr5 38113773 38113887 -164971645 + L1ME LINE L1 1586 1824 -4602 3108 286 68 24 chr5 38113912 38115665 -164969867 + L1ME LINE L1 3538 5368 -1058 1404 261 98 1 chr5 38115724 38116257 -164969275 + L1ME LINE L1 5467 6052 -394 453 242 35 116 chr5 38116323 38116618 -164968914 + L1MB7 LINE L1 5667 5925 -317 1950 138 0 3 chr5 38116618 38116915 -164968617 + AluSx SINE Alu 1 296 -16 453 242 35 116 chr5 38116915 38116997 -164968535 + L1MB7 LINE L1 5925 6012 -230 243 306 69 7 chr5 38117022 38117166 -164968366 + L1MA10 LINE L1 6179 6331 -3 877 76 0 0 chr5 38117502 38117620 -164967912 + L1PA5 LINE L1 6037 6154 0 23 33 0 0 chr5 38117843 38117873 -164967659 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr5 38118430 38118470 -164967062 + AT_rich Low_complexity Low_complexity 1 40 0 208 313 15 30 chr5 38118674 38118741 -164966791 - MIR SINE MIR -151 111 46 2353 81 0 3 chr5 38119013 38119323 -164966209 + AluY SINE Alu 1 309 -2 249 33 0 0 chr5 38119323 38119353 -164966179 + (TA)n Simple_repeat Simple_repeat 2 31 0 1404 202 184 12 chr5 38119590 38120014 -164965518 - L1MA3 LINE L1 -1 6304 5806 249 33 0 0 chr5 38120047 38120077 -164965455 + (TA)n Simple_repeat Simple_repeat 2 31 0 1661 165 170 16 chr5 38120438 38120808 -164964724 + MSTA LTR MaLR 1 427 -1 20276 157 40 12 chr5 38120906 38124696 -164960836 + L1M1 LINE L1 12 3915 -3650 732 151 16 0 chr5 38124701 38124827 -164960705 + AluSq/x SINE Alu 1 128 -184 2732 121 56 21 chr5 38124933 38125413 -164960119 + L1MA3 LINE L1 5808 6304 -1 482 0 0 17 chr5 38126403 38126462 -164959070 + (TATAA)n Simple_repeat Simple_repeat 5 62 0 25 0 0 0 chr5 38126919 38126944 -164958588 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr5 38128368 38128399 -164957133 + AT_rich Low_complexity Low_complexity 1 31 0 211 304 114 114 chr5 38130227 38130411 -164955121 - MIR SINE MIR -59 203 20 213 315 89 48 chr5 38130522 38130653 -164954879 + MIR SINE MIR 20 154 -63 30 0 0 0 chr5 38130703 38130733 -164954799 + AT_rich Low_complexity Low_complexity 1 30 0 551 232 85 17 chr5 38131126 38131303 -164954229 + MER5A DNA MER1_type 1 189 0 329 306 74 9 chr5 38131436 38131544 -164953988 - L2 LINE L2 -3 3269 3155 241 344 16 23 chr5 38132178 38132306 -164953226 - L2 LINE L2 -999 2315 2189 1535 210 45 81 chr5 38133548 38134015 -164951517 - MLT1C LTR MaLR -17 450 1 2199 122 0 0 chr5 38134050 38134361 -164951171 + AluSx SINE Alu 1 311 -1 222 171 0 0 chr5 38135839 38135880 -164949652 + (TA)n Simple_repeat Simple_repeat 2 42 0 21 57 0 0 chr5 38136043 38136078 -164949454 + AT_rich Low_complexity Low_complexity 1 35 0 2214 99 0 3 chr5 38136462 38136755 -164948777 + AluSc SINE Alu 1 292 -17 267 114 0 0 chr5 38136862 38136906 -164948626 + (T)n Simple_repeat Simple_repeat 1 44 0 447 68 0 0 chr5 38137018 38137077 -164948455 + (TA)n Simple_repeat Simple_repeat 1 59 0 520 321 29 44 chr5 38137352 38137692 -164947840 - MLT1J1 LTR MaLR 0 446 112 361 240 20 60 chr5 38137842 38137992 -164947540 - L1MC5 LINE L1 -182 7779 7636 206 293 23 83 chr5 38138283 38138416 -164947116 - MIR3 SINE MIR -52 156 32 198 318 91 0 chr5 38141170 38141236 -164944296 + MIR SINE MIR 120 191 -71 2030 96 17 3 chr5 38141907 38142199 -164943333 + AluSc SINE Alu 1 296 -13 182 315 0 76 chr5 38142907 38142999 -164942533 + MER5A DNA MER1_type 23 107 -82 221 283 172 0 chr5 38143256 38143355 -164942177 + MIR SINE MIR 145 260 -2 23 0 0 0 chr5 38143630 38143653 -164941879 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr5 38143717 38143747 -164941785 + AT_rich Low_complexity Low_complexity 1 30 0 2140 73 42 0 chr5 38143806 38144093 -164941439 - AluY SINE Alu -12 299 1 2072 99 0 0 chr5 38144698 38145016 -164940516 - AluSc SINE Alu 0 318 1 2114 118 3 13 chr5 38145016 38145330 -164940202 - AluSx SINE Alu 0 312 1 43 35 0 0 chr5 38145624 38145681 -164939851 + AT_rich Low_complexity Low_complexity 1 57 0 1986 103 4 0 chr5 38146530 38146802 -164938730 + AluSc SINE Alu 35 307 -2 2175 99 3 0 chr5 38147080 38147374 -164938158 + AluY SINE Alu 1 295 -16 3302 234 40 43 chr5 38147506 38148535 -164936997 + L1PA12 LINE L1 2234 3266 -4318 2136 120 10 0 chr5 38148535 38148835 -164936697 - AluSx SINE Alu -9 303 1 3302 234 40 43 chr5 38148835 38149035 -164936497 + L1PA12 LINE L1 3266 3465 -4119 3162 143 76 27 chr5 38149039 38149674 -164935858 + L1PA16 LINE L1 5490 6155 -11 25 0 0 0 chr5 38149825 38149850 -164935682 + AT_rich Low_complexity Low_complexity 1 25 0 193 350 68 29 chr5 38150102 38150205 -164935327 + MIR SINE MIR 18 124 -138 36 87 0 0 chr5 38150282 38150374 -164935158 + AT_rich Low_complexity Low_complexity 1 92 0 21 36 0 0 chr5 38150473 38150501 -164935031 + AT_rich Low_complexity Low_complexity 1 28 0 611 250 0 91 chr5 38150891 38151111 -164934421 - L2 LINE L2 -2 3311 3112 631 42 21 11 chr5 38151361 38151456 -164934076 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 334 344 25 25 chr5 38202681 38202844 -164882688 - MIR SINE MIR -97 165 3 334 369 63 11 chr5 38203972 38204240 -164881292 - L1M4 LINE L1 -1300 4846 4565 1987 191 10 23 chr5 38205272 38205801 -164879731 - L1M2 LINE L1 -643 5648 5131 417 108 15 0 chr5 38205798 38205863 -164879669 - L1MA7 LINE L1 -444 5847 5782 * 397 289 75 35 chr5 38206204 38206432 -164879100 + L1MC/D LINE L1 4777 5013 -1133 264 246 117 35 chr5 38206640 38206811 -164878721 + L1MC/D LINE L1 5265 5449 -2359 248 186 17 0 chr5 38209100 38209159 -164876373 + (TA)n Simple_repeat Simple_repeat 2 61 0 541 237 9 0 chr5 38209159 38209273 -164876259 - MLT1B LTR MaLR -273 117 3 286 175 67 17 chr5 38209352 38209472 -164876060 + (TA)n Simple_repeat Simple_repeat 1 126 0 1990 143 19 10 chr5 38210117 38210425 -164875107 + AluSx SINE Alu 2 312 0 252 264 36 50 chr5 38210432 38210572 -164874960 + MER93a LTR ERV1 117 254 -148 * 374 301 21 21 chr5 38210550 38210693 -164874839 + MER93a LTR ERV1 201 343 -59 21 0 0 0 chr5 38211047 38211068 -164874464 + AT_rich Low_complexity Low_complexity 1 21 0 263 238 24 12 chr5 38212315 38212399 -164873133 + L1M4 LINE L1 2944 3028 -3118 330 234 61 30 chr5 38212450 38212681 -164872851 + L1M4 LINE L1 3029 3266 -2880 276 98 0 0 chr5 38212682 38212723 -164872809 + Tigger1 DNA MER2_type 575 615 -1803 2068 109 0 35 chr5 38212724 38213035 -164872497 - AluSx SINE Alu -12 300 1 962 204 44 19 chr5 38213225 38213667 -164871865 - Charlie5 DNA MER1_type 0 2621 17 23 54 0 0 chr5 38213958 38213995 -164871537 + AT_rich Low_complexity Low_complexity 1 37 0 450 95 214 0 chr5 38214170 38214254 -164871278 + L1PA8 LINE L1 6041 6142 -30 280 153 68 0 chr5 38214256 38214315 -164871217 + L1PA8A LINE L1 6038 6100 -31 247 177 65 0 chr5 38214288 38214350 -164871182 + L1PA8A LINE L1 6038 6103 -28 * 259 164 66 0 chr5 38214385 38214446 -164871086 + L1PA8A LINE L1 6039 6103 -28 259 164 66 0 chr5 38214417 38214478 -164871054 + L1PA8A LINE L1 6039 6103 -28 259 164 66 0 chr5 38214481 38214542 -164870990 + L1PA8A LINE L1 6039 6103 -28 266 169 68 0 chr5 38214547 38214606 -164870926 + L1PA8A LINE L1 6041 6103 -28 * 398 59 0 0 chr5 38214577 38214628 -164870904 + L1PA8 LINE L1 6078 6128 -44 376 294 46 50 chr5 38214729 38214827 -164870705 + HAL1 LINE L1 964 1061 -1446 2571 45 0 7 chr5 38214827 38215136 -164870396 + AluY SINE Alu 1 307 -4 376 294 46 50 chr5 38215136 38215255 -164870277 + HAL1 LINE L1 1061 1180 -1327 234 272 10 39 chr5 38215370 38215473 -164870059 + HAL1 LINE L1 1388 1487 -1020 311 296 81 81 chr5 38215507 38215633 -164869899 + HAL1 LINE L1 1600 1725 -782 2048 129 16 0 chr5 38215633 38215936 -164869596 + AluSx SINE Alu 1 308 -4 311 296 81 81 chr5 38215936 38216249 -164869283 + HAL1 LINE L1 1725 2042 -465 1974 126 3 20 chr5 38216249 38216551 -164868981 + AluSg SINE Alu 1 297 -13 311 296 81 81 chr5 38216551 38216692 -164868840 + HAL1 LINE L1 2041 2181 -326 199 326 0 0 chr5 38217420 38217469 -164868063 + MIR SINE MIR 98 146 -62 237 348 85 0 chr5 38217631 38217795 -164867737 - MIR SINE MIR -71 191 14 398 143 13 13 chr5 38218014 38218091 -164867441 - Tigger1 DNA MER2_type -476 1942 1866 1571 160 4 0 chr5 38218094 38218369 -164867163 + AluSg SINE Alu 37 312 0 1150 142 37 50 chr5 38218381 38218599 -164866933 + AluSx SINE Alu 44 258 -54 218 123 15 46 chr5 38218642 38218707 -164866825 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 643 362 91 19 chr5 38219407 38220051 -164865481 + L2 LINE L2 2365 3048 -265 6271 158 22 15 chr5 38220439 38221551 -164863981 - Tigger1 DNA MER2_type -1298 1120 1 23 33 0 0 chr5 38221662 38221692 -164863840 + AT_rich Low_complexity Low_complexity 1 30 0 6447 35 8 2 chr5 38221695 38222879 -164862653 + L1P2 LINE L1 4590 5776 -379 5448 180 16 25 chr5 38223272 38223480 -164862052 + L1PB3 LINE L1 4194 4402 -1752 318 67 0 0 chr5 38223480 38223525 -164862007 + (CAATA)n Simple_repeat Simple_repeat 2 46 0 5448 180 16 25 chr5 38223525 38225294 -164860238 + L1PB3 LINE L1 4402 6151 -3 3180 219 101 10 chr5 38225345 38226045 -164859487 + MER21B LTR ERV1 55 818 -45 231 364 58 0 chr5 38227674 38227795 -164857737 + MIR SINE MIR 49 176 -86 1648 205 5 54 chr5 38228320 38228730 -164856802 + MLT1B LTR MaLR 1 390 0 186 207 83 136 chr5 38228932 38229101 -164856431 + L2 LINE L2 3136 3295 -18 23 33 0 0 chr5 38229343 38229373 -164856159 + AT_rich Low_complexity Low_complexity 1 30 0 3567 241 63 42 chr5 38230996 38232326 -164853206 + L1 LINE L1 3941 5298 -848 3438 207 62 6 chr5 38232328 38233375 -164852157 + L1P4 LINE L1 4376 5473 -693 6951 55 0 0 chr5 38233375 38234497 -164851035 - L1PA6 LINE L1 -3 6151 5030 1317 195 4 4 chr5 38234600 38234836 -164850696 - AluSq SINE Alu -77 236 1 233 303 55 9 chr5 38234890 38234999 -164850533 + L2 LINE L2 1587 1700 -1614 2451 286 80 95 chr5 38235981 38237747 -164847785 + L2 LINE L2 262 2002 -1312 669 294 35 51 chr5 38237786 38238041 -164847491 + L2 LINE L2 2553 2803 -511 2020 83 0 104 chr5 38238041 38238379 -164847153 + AluSg SINE Alu 1 303 -7 294 227 28 28 chr5 38238604 38238745 -164846787 + G-rich Low_complexity Low_complexity 2 142 0 403 302 90 37 chr5 38238866 38239134 -164846398 + L2 LINE L2 2996 3277 -36 851 189 87 5 chr5 38239535 38239720 -164845812 + L1MC1 LINE L1 6128 6327 -6 299 336 73 69 chr5 38240100 38240347 -164845185 - MIR SINE MIR -12 250 3 384 362 93 47 chr5 38241310 38241804 -164843728 + MLT1K LTR MaLR 70 586 -2 23 0 0 0 chr5 38242015 38242038 -164843494 + AT_rich Low_complexity Low_complexity 1 23 0 234 62 0 0 chr5 38242437 38242469 -164843063 + (CA)n Simple_repeat Simple_repeat 2 33 0 10964 212 21 51 chr5 38242469 38245383 -164840149 + L1M1 LINE L1 13 3236 -4329 1779 148 18 0 chr5 38245383 38245660 -164839872 - AluSx SINE Alu -6 306 25 10964 212 21 51 chr5 38245660 38245809 -164839723 + L1M1 LINE L1 3236 3388 -4177 8563 220 50 9 chr5 38246216 38248457 -164837075 + L1M1 LINE L1 3496 5827 -1738 1099 228 19 0 chr5 38248438 38248745 -164836787 + L1 LINE L1 4306 4618 -2947 * 2949 186 49 9 chr5 38249508 38250157 -164835375 - L1MB1 LINE L1 -3 6165 5491 21 0 0 0 chr5 38250188 38250209 -164835323 + AT_rich Low_complexity Low_complexity 1 21 0 1913 141 0 0 chr5 38250234 38250543 -164834989 - AluSx SINE Alu 0 309 1 252 234 47 75 chr5 38251932 38252039 -164833493 - MIR SINE MIR -105 157 54 22 80 0 0 chr5 38252087 38252137 -164833395 + AT_rich Low_complexity Low_complexity 1 50 0 541 175 111 16 chr5 38252431 38252557 -164832975 - MER58B DNA MER1_type 0 341 204 17773 52 12 35 chr5 38252568 38255028 -164830504 - L1PA4 LINE L1 -1586 4560 2157 7152 47 6 0 chr5 38255028 38256631 -164828901 + L1PA4 LINE L1 4548 6155 0 257 183 33 0 chr5 38256661 38256721 -164828811 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 242 333 24 16 chr5 38256834 38256957 -164828575 + MIR SINE MIR 126 249 -13 345 223 0 0 chr5 38258428 38258522 -164827010 + (TA)n Simple_repeat Simple_repeat 2 95 0 21 36 0 0 chr5 38259685 38259713 -164825819 + AT_rich Low_complexity Low_complexity 1 28 0 237 65 0 0 chr5 38260061 38260092 -164825440 + (TA)n Simple_repeat Simple_repeat 1 31 0 26 50 0 0 chr5 38260779 38260819 -164824713 + AT_rich Low_complexity Low_complexity 1 40 0 189 107 0 0 chr5 38261275 38261303 -164824229 + (CA)n Simple_repeat Simple_repeat 2 29 0 27 29 0 0 chr5 38261846 38261880 -164823652 + AT_rich Low_complexity Low_complexity 1 34 0 257 208 0 0 chr5 38263940 38263988 -164821544 + L2 LINE L2 3195 3242 -71 2346 21 7 3 chr5 38264879 38265161 -164820371 + AluYa5 SINE Alu 1 283 -28 204 40 0 0 chr5 38266463 38266488 -164819044 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 245 29 29 0 chr5 38266487 38266521 -164819011 + (TG)n Simple_repeat Simple_repeat 2 36 0 339 194 0 0 chr5 38267088 38267181 -164818351 + (TA)n Simple_repeat Simple_repeat 1 93 0 22 0 0 0 chr5 38267978 38268000 -164817532 + AT_rich Low_complexity Low_complexity 1 22 0 258 105 0 0 chr5 38268454 38268492 -164817040 + (TA)n Simple_repeat Simple_repeat 1 38 0 197 133 0 0 chr5 38268618 38268648 -164816884 - L2 LINE L2 -15 3298 3269 49 76 0 0 chr5 38269792 38269897 -164815635 + AT_rich Low_complexity Low_complexity 1 105 0 293 348 135 10 chr5 38270442 38270649 -164814883 + MIR SINE MIR 12 244 -18 22 35 0 0 chr5 38270865 38270894 -164814638 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr5 38270976 38271003 -164814529 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1312 221 40 63 chr5 38271166 38271641 -164813891 - MLT2C2 LTR ERVL 0 464 1 31 68 0 0 chr5 38271723 38271782 -164813750 + AT_rich Low_complexity Low_complexity 1 59 0 2052 131 3 10 chr5 38272847 38273160 -164812372 + AluSx SINE Alu 1 311 -1 277 215 15 0 chr5 38273220 38273285 -164812247 - MER89 LTR ERV1 -9 550 485 1075 249 46 11 chr5 38273389 38273827 -164811705 - MER89 LTR ERV1 -32 527 1 227 27 0 54 chr5 38273850 38273887 -164811645 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 800 137 0 46 chr5 38273888 38274019 -164811513 + AluSq/x SINE Alu 1 125 -187 197 86 57 0 chr5 38274019 38274054 -164811478 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 27 29 0 0 chr5 38274163 38274197 -164811335 + AT_rich Low_complexity Low_complexity 1 34 0 360 306 157 20 chr5 38275893 38276301 -164809231 + HAL1b LINE L1 83 546 -802 261 31 0 0 chr5 38276479 38276511 -164809021 - AluSc SINE Alu -13 286 255 638 307 91 66 chr5 38276645 38277179 -164808353 - L2 LINE L2 0 3313 2766 1850 196 6 3 chr5 38277240 38277572 -164807960 + MER7A DNA MER2_type 16 346 0 1689 218 3 3 chr5 38277732 38278058 -164807474 + MLT1A1 LTR MaLR 1 326 -39 23 33 0 0 chr5 38278703 38278733 -164806799 + AT_rich Low_complexity Low_complexity 1 30 0 272 336 64 0 chr5 38278854 38278964 -164806568 + MER110-int LTR ERV1 4336 4452 -195 640 260 129 54 chr5 38278967 38279065 -164806467 + MER110 LTR ERV1 116 205 -286 1291 198 65 47 chr5 38279065 38279403 -164806129 + MER2 DNA MER2_type 1 344 0 640 260 129 54 chr5 38279403 38279654 -164805878 + MER110 LTR ERV1 205 491 0 464 118 53 13 chr5 38281470 38281622 -164803910 + (TA)n Simple_repeat Simple_repeat 2 159 0 541 104 0 0 chr5 38281623 38281700 -164803832 - AluY SINE Alu -30 281 205 351 0 0 0 chr5 38281724 38281763 -164803769 + (TG)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr5 38281900 38281925 -164803607 + (CA)n Simple_repeat Simple_repeat 2 26 0 2104 115 7 0 chr5 38283762 38284058 -164801474 + AluSx SINE Alu 1 298 -14 2430 72 0 0 chr5 38284767 38285073 -164800459 - AluY SINE Alu -5 306 1 21 0 0 0 chr5 38285597 38285618 -164799914 + AT_rich Low_complexity Low_complexity 1 21 0 1705 262 40 38 chr5 38286323 38286896 -164798636 + MLT1E LTR MaLR 17 590 -3 617 282 126 27 chr5 38287142 38287443 -164798089 + MLT1G1 LTR MaLR 263 593 -2 26 30 0 0 chr5 38288435 38288468 -164797064 + AT_rich Low_complexity Low_complexity 1 33 0 3228 137 27 14 chr5 38288631 38289082 -164796450 - L1MA8 LINE L1 -3 6288 5826 1912 113 3 61 chr5 38289082 38289393 -164796139 - AluSc SINE Alu -16 293 1 3228 137 27 14 chr5 38289393 38289532 -164796000 - L1MA8 LINE L1 -465 5826 5690 1411 180 45 14 chr5 38289694 38290265 -164795267 + L1PA16 LINE L1 5473 6122 -44 3689 152 25 126 chr5 38290317 38290775 -164794757 + L1MB1 LINE L1 5309 5811 -357 1695 126 0 4 chr5 38290775 38291029 -164794503 + AluSx SINE Alu 1 253 -59 3689 152 25 126 chr5 38291029 38291165 -164794367 + L1MB1 LINE L1 5811 5959 -209 2168 102 3 13 chr5 38291165 38291468 -164794064 + AluY SINE Alu 3 302 -9 3689 152 25 126 chr5 38291468 38291828 -164793704 + L1MB1 LINE L1 5959 6168 0 224 282 81 54 chr5 38293577 38293726 -164791806 - MIR SINE MIR -34 228 76 1644 120 47 63 chr5 38293734 38294051 -164791481 - AluSq SINE Alu -1 312 1 1335 174 25 73 chr5 38294437 38294665 -164790867 + MLT1A1 LTR MaLR 1 207 -158 2049 126 38 3 chr5 38294665 38295007 -164790525 + THE1A LTR MaLR 2 355 0 1335 174 25 73 chr5 38295007 38295134 -164790398 + MLT1A1 LTR MaLR 207 339 -26 2476 55 0 7 chr5 38295134 38295444 -164790088 - AluY SINE Alu 0 311 4 235 189 14 14 chr5 38297463 38297537 -164787995 + (TA)n Simple_repeat Simple_repeat 1 74 0 22 0 0 0 chr5 38298143 38298165 -164787367 + AT_rich Low_complexity Low_complexity 1 22 0 367 343 77 33 chr5 38298618 38298983 -164786549 + HAL1 LINE L1 368 748 -1759 473 321 74 5 chr5 38299543 38299758 -164785774 + MIR SINE MIR 31 260 -2 310 371 26 0 chr5 38300355 38300506 -164785026 + MIR SINE MIR 96 250 -12 21 57 0 0 chr5 38300559 38300594 -164784938 + AT_rich Low_complexity Low_complexity 1 35 0 6185 68 2 0 chr5 38301387 38302182 -164783350 - L1PA8 LINE L1 -1 6171 5375 181 280 20 0 chr5 38303797 38303847 -164781685 - MIR SINE MIR -56 152 102 192 319 58 0 chr5 38303943 38304012 -164781520 + MIR SINE MIR 68 140 -122 206 348 22 22 chr5 38304887 38304976 -164780556 + MIR3 SINE MIR 101 189 -19 1010 155 0 6 chr5 38305288 38305462 -164780070 + AluSg/x SINE Alu 140 312 0 183 80 0 0 chr5 38305664 38305689 -164779843 + (T)n Simple_repeat Simple_repeat 1 25 0 605 256 7 114 chr5 38306326 38306607 -164778925 - MER31B LTR ERV1 -5 461 211 442 181 62 49 chr5 38306704 38306848 -164778684 - MER51D LTR ERV1 -43 614 469 311 220 44 11 chr5 38307305 38307396 -164778136 - MER31B LTR ERV1 -372 94 1 232 284 20 20 chr5 38308011 38308113 -164777419 + CT-rich Low_complexity Low_complexity 3 104 0 1033 233 5 98 chr5 38308142 38308528 -164777004 + MLT1A1 LTR MaLR 14 363 -2 206 167 0 56 chr5 38308774 38308801 -164776731 + T-rich Low_complexity Low_complexity 5 29 -26 3051 48 8 0 chr5 38308801 38309179 -164776353 - L1PA5 LINE L1 -4 6150 5770 206 167 0 56 chr5 38309179 38309205 -164776327 + T-rich Low_complexity Low_complexity 29 55 0 24 53 0 0 chr5 38309332 38309370 -164776162 + AT_rich Low_complexity Low_complexity 1 38 0 24 53 0 0 chr5 38310340 38310378 -164775154 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr5 38310722 38310743 -164774789 + AT_rich Low_complexity Low_complexity 1 21 0 2128 104 0 30 chr5 38310950 38311248 -164774284 + AluSq SINE Alu 1 289 -24 2447 128 8 0 chr5 38311651 38312011 -164773521 - THE1B LTR MaLR 0 364 2 370 305 8 17 chr5 38312064 38312182 -164773350 + L2 LINE L2 3197 3313 0 2131 172 27 5 chr5 38313262 38313668 -164771864 + L1PA13 LINE L1 5743 6157 -6 373 240 12 2 chr5 38314598 38314702 -164770830 - L1M4 LINE L1 -1999 4147 4044 23 33 0 0 chr5 38314835 38314865 -164770667 + AT_rich Low_complexity Low_complexity 1 30 0 1974 119 27 7 chr5 38314867 38315162 -164770370 + AluSx SINE Alu 1 301 -11 2206 127 0 0 chr5 38315522 38315822 -164769710 + AluSx SINE Alu 1 300 -12 234 284 30 0 chr5 38318186 38318253 -164767279 + GA-rich Low_complexity Low_complexity 3 71 0 24 0 0 0 chr5 38319579 38319603 -164765929 + AT_rich Low_complexity Low_complexity 1 24 0 25 75 0 0 chr5 38320098 38320151 -164765381 + AT_rich Low_complexity Low_complexity 1 53 0 3217 55 0 0 chr5 38322153 38322554 -164762978 + L1PA4 LINE L1 5753 6153 -2 1556 329 71 24 chr5 38322710 38323460 -164762072 + L1M4c LINE L1 423 1207 -5096 1687 269 44 38 chr5 38323529 38324329 -164761203 + L1M4c LINE L1 1029 1833 -4551 2876 254 68 15 chr5 38324401 38326107 -164759425 + L1M4c LINE L1 2054 3879 -2503 290 154 29 0 chr5 38326370 38326434 -164759098 - Alu SINE Alu -7 295 245 297 0 0 0 chr5 38326434 38326467 -164759065 + (T)n Simple_repeat Simple_repeat 1 33 0 744 107 82 0 chr5 38326467 38326589 -164758943 - AluSq/x SINE Alu -179 133 2 555 260 138 86 chr5 38327108 38327377 -164758155 - L2 LINE L2 -836 2478 2196 425 382 62 6 chr5 38327393 38327571 -164757961 + MER91A DNA MER1_type 8 195 -1 1133 293 86 34 chr5 38327751 38328284 -164757248 - L2 LINE L2 -1203 2111 1551 249 33 0 0 chr5 38328285 38328315 -164757217 + (CA)n Simple_repeat Simple_repeat 2 31 0 1494 206 17 63 chr5 38328456 38328806 -164756726 + MLT1B LTR MaLR 57 390 0 21 36 0 0 chr5 38329285 38329313 -164756219 + AT_rich Low_complexity Low_complexity 1 28 0 184 150 67 67 chr5 38329490 38329550 -164755982 + L3 LINE CR1 776 835 -742 22 70 0 0 chr5 38329893 38329936 -164755596 + AT_rich Low_complexity Low_complexity 1 43 0 846 261 46 42 chr5 38330750 38331216 -164754316 - LTR40c LTR ERVL 0 519 5 230 259 35 0 chr5 38331277 38331335 -164754197 + L2 LINE L2 3237 3296 -17 420 353 47 22 chr5 38331442 38331674 -164753858 - L2 LINE L2 -554 2760 2523 53 78 0 0 chr5 38331819 38331935 -164753597 + AT_rich Low_complexity Low_complexity 1 116 0 23 0 0 0 chr5 38332586 38332609 -164752923 + AT_rich Low_complexity Low_complexity 1 23 0 269 206 48 16 chr5 38333460 38333523 -164752009 + MER116 DNA Mariner 1 65 -15 450 265 200 14 chr5 38333533 38333748 -164751784 - MIR SINE MIR 0 262 8 671 204 0 0 chr5 38334289 38334426 -164751106 - FRAM SINE Alu -1 175 39 1846 177 0 0 chr5 38334518 38334828 -164750704 + AluSx SINE Alu 1 310 -2 2153 86 4 4 chr5 38336295 38336626 -164748906 + AluSc SINE Alu 1 331 0 4025 152 47 5 chr5 38338077 38338823 -164746709 + L1MA4A LINE L1 5515 6291 -12 393 320 102 27 chr5 38338847 38339072 -164746460 - MIR SINE MIR -19 243 2 1994 134 56 20 chr5 38339550 38339908 -164745624 - THE1C LTR MaLR 0 375 5 228 357 91 46 chr5 38340006 38340269 -164745263 + MLT1K LTR MaLR 278 552 -36 198 295 69 81 chr5 38341137 38341310 -164744222 - L2 LINE L2 -1362 1952 1782 27 73 0 0 chr5 38343449 38343504 -164742028 + AT_rich Low_complexity Low_complexity 1 55 0 269 369 15 23 chr5 38343643 38343773 -164741759 - L2 LINE L2 -655 2659 2531 230 240 0 0 chr5 38343855 38343905 -164741627 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 15848 148 16 8 chr5 38344062 38347616 -164737916 + L1PA10 LINE L1 2584 6164 -4 213 132 0 0 chr5 38347699 38347737 -164737795 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1381 272 62 14 chr5 38348641 38349079 -164736453 + MLT1C LTR MaLR 4 462 -5 22 0 0 0 chr5 38349586 38349608 -164735924 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr5 38350092 38350120 -164735412 + AT_rich Low_complexity Low_complexity 1 28 0 364 186 0 0 chr5 38350540 38350633 -164734899 - AluJ/FRAM SINE Alu 0 316 224 1069 263 40 54 chr5 38350865 38351321 -164734211 - MLT1E2 LTR MaLR -184 442 1 478 356 121 11 chr5 38351322 38351769 -164733763 - L1MEc LINE L1 -5789 607 112 23 0 0 0 chr5 38353062 38353085 -164732447 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr5 38353237 38353258 -164732274 + AT_rich Low_complexity Low_complexity 1 21 0 1911 126 51 7 chr5 38354614 38354908 -164730624 - AluSq SINE Alu -4 309 3 381 22 0 0 chr5 38355453 38355499 -164730033 + (CA)n Simple_repeat Simple_repeat 2 47 0 1577 111 0 0 chr5 38357656 38357873 -164727659 - AluSg/x SINE Alu -5 307 91 198 71 0 0 chr5 38358030 38358058 -164727474 + (TTA)n Simple_repeat Simple_repeat 1 28 0 272 191 56 34 chr5 38358155 38358244 -164727288 - L1MC4 LINE L1 -1338 6704 6614 222 219 0 0 chr5 38358246 38358287 -164727245 + (CATATA)n Simple_repeat Simple_repeat 5 45 0 443 345 58 34 chr5 38358298 38358626 -164726906 - L1 LINE L1 -1114 5032 4697 196 212 30 0 chr5 38360048 38360114 -164725418 + (TA)n Simple_repeat Simple_repeat 2 69 0 1746 144 55 38 chr5 38360118 38360485 -164725047 - THE1C LTR MaLR -2 373 1 8841 150 19 34 chr5 38360490 38362087 -164723445 - THE1C-int LTR MaLR -5 1575 4 1621 162 68 41 chr5 38362090 38362455 -164723077 - THE1C LTR MaLR 0 375 1 309 183 0 0 chr5 38362455 38362515 -164723017 + (CA)n Simple_repeat Simple_repeat 1 60 0 2079 125 3 0 chr5 38363007 38363303 -164722229 + AluSg SINE Alu 1 297 -13 47 0 0 0 chr5 38363909 38363956 -164721576 + AT_rich Low_complexity Low_complexity 1 47 0 300 27 0 0 chr5 38364161 38364198 -164721334 + (TG)n Simple_repeat Simple_repeat 2 38 0 232 393 17 38 chr5 38365229 38365519 -164720013 - L2 LINE L2 -475 2839 2556 1340 160 43 43 chr5 38366454 38366735 -164718797 - MSTB1 LTR MaLR 0 432 152 1865 167 0 0 chr5 38367934 38368239 -164717293 + AluSx SINE Alu 5 309 -3 2156 96 3 7 chr5 38368495 38368788 -164716744 - AluSg SINE Alu -18 292 1 31 26 0 0 chr5 38368832 38368870 -164716662 + AT_rich Low_complexity Low_complexity 1 38 0 512 283 168 23 chr5 38369862 38370035 -164715497 - MER58A DNA MER1_type -18 206 9 496 251 153 14 chr5 38370340 38370581 -164714951 + MLT1G LTR MaLR 14 249 -341 1006 197 46 115 chr5 38370726 38371117 -164714415 + MLT1A1 LTR MaLR 2 365 0 1175 118 0 12 chr5 38371144 38371314 -164714218 - AluSc SINE Alu -2 307 140 345 279 8 41 chr5 38371315 38371437 -164714095 + MLT1H1 LTR MaLR 438 555 0 195 293 58 92 chr5 38371592 38371766 -164713766 + L2 LINE L2 2327 2494 -820 268 339 132 28 chr5 38373101 38373390 -164712142 + L3 LINE CR1 843 1161 -416 224 335 114 18 chr5 38376383 38376610 -164708922 - MIR SINE MIR -13 249 1 22 0 0 0 chr5 38376709 38376731 -164708801 + AT_rich Low_complexity Low_complexity 1 22 0 243 313 75 34 chr5 38377017 38377164 -164708368 - MIR SINE MIR -10 252 100 22 0 0 0 chr5 38377249 38377271 -164708261 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr5 38377549 38377584 -164707948 + AT_rich Low_complexity Low_complexity 1 35 0 777 125 23 0 chr5 38377603 38377731 -164707801 - L1PA15 LINE L1 -1 6164 6034 203 95 48 0 chr5 38377731 38377773 -164707759 + T-rich Low_complexity Low_complexity 1 44 0 1667 196 0 10 chr5 38377773 38378085 -164707447 - AluJb SINE Alu -3 309 1 26 64 0 0 chr5 38378544 38378591 -164706941 + AT_rich Low_complexity Low_complexity 1 47 0 1252 68 6 0 chr5 38378890 38379052 -164706480 - L1PA12 LINE L1 -178 5990 5828 1290 107 25 0 chr5 38379052 38379246 -164706286 + L1PA12 LINE L1 5967 6167 -1 2358 69 10 10 chr5 38379251 38379556 -164705976 + AluY SINE Alu 3 307 -4 505 228 74 20 chr5 38379695 38379844 -164705688 - MIR SINE MIR -58 204 48 22 56 0 0 chr5 38379865 38379901 -164705631 + AT_rich Low_complexity Low_complexity 1 36 0 364 250 23 11 chr5 38379906 38379994 -164705538 + L1PA14 LINE L1 1 89 -7492 7932 18 7 1 chr5 38380002 38381086 -164704446 - L1HS LINE L1 0 6155 5060 414 39 0 0 chr5 38381572 38381624 -164703908 + (CA)n Simple_repeat Simple_repeat 2 53 0 4195 202 31 2 chr5 38381918 38382845 -164702687 + L1MC1 LINE L1 5181 6130 -203 23 54 0 0 chr5 38383684 38383721 -164701811 + AT_rich Low_complexity Low_complexity 1 37 0 260 311 0 0 chr5 38384036 38384097 -164701435 - MER5A DNA MER1_type -122 67 7 21 0 0 0 chr5 38384269 38384290 -164701242 + AT_rich Low_complexity Low_complexity 1 21 0 7968 23 3 0 chr5 38384616 38385576 -164699956 - L1P LINE L1 -758 5388 4426 * 8478 27 0 0 chr5 38385573 38386573 -164698959 + L1P LINE L1 3389 4388 -1758 9781 204 43 114 chr5 38386575 38390004 -164695528 + L1PA14 LINE L1 83 3288 -4296 * 11821 215 22 4 chr5 38389998 38392608 -164692924 + L1PA14 LINE L1 3753 6410 -1174 3552 131 23 70 chr5 38392601 38393348 -164692184 + L1PA14 LINE L1 6644 7355 -244 * 516 96 24 0 chr5 38393486 38393569 -164691963 - L1PA5 LINE L1 -5 6149 6065 1620 129 0 35 chr5 38394194 38394485 -164691047 - AluSx SINE Alu 0 317 36 715 367 46 26 chr5 38394676 38395216 -164690316 - HERVL LTR ERVL -3424 2230 1680 180 0 0 0 chr5 38395216 38395236 -164690296 + (TTG)n Simple_repeat Simple_repeat 3 22 0 446 363 23 33 chr5 38395607 38396001 -164689531 - HERVL LTR ERVL -4358 1296 907 2112 117 0 52 chr5 38396282 38396608 -164688924 - AluSc SINE Alu 0 309 1 391 232 293 0 chr5 38397011 38397175 -164688357 - LTR50 LTR ERVL -4 791 580 729 268 206 5 chr5 38397360 38397748 -164687784 - LTR50 LTR ERVL -329 466 1 326 320 80 7 chr5 38397977 38398127 -164687405 - MIR SINE MIR -34 228 68 3142 194 31 16 chr5 38399253 38399274 -164686258 + L1MC2 LINE L1 5588 5607 -737 1892 104 41 4 chr5 38399274 38399573 -164685959 + AluSg SINE Alu 1 309 0 3142 194 31 16 chr5 38399573 38400287 -164685245 + L1MC2 LINE L1 5607 6335 -9 21 0 0 0 chr5 38402307 38402328 -164683204 + AT_rich Low_complexity Low_complexity 1 21 0 600 114 23 0 chr5 38403740 38403871 -164681661 + (TA)n Simple_repeat Simple_repeat 2 135 0 21 36 0 0 chr5 38403881 38403909 -164681623 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr5 38404137 38404175 -164681357 + AT_rich Low_complexity Low_complexity 1 38 0 273 182 0 0 chr5 38405687 38405742 -164679790 + CT-rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr5 38406875 38406903 -164678629 + AT_rich Low_complexity Low_complexity 1 28 0 186 229 21 21 chr5 38407027 38407075 -164678457 - L2 LINE L2 0 3313 3266 369 283 78 54 chr5 38407922 38408127 -164677405 + L2 LINE L2 3099 3308 -5 241 304 104 9 chr5 38408203 38408318 -164677214 - MIR SINE MIR -65 197 72 3716 199 49 39 chr5 38408465 38409318 -164676214 + L1MB3 LINE L1 6 870 -5514 216 0 0 0 chr5 38409318 38409342 -164676190 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3716 199 49 39 chr5 38409342 38409389 -164676143 + L1MB3 LINE L1 870 915 -5469 205 297 93 25 chr5 38409429 38409547 -164675985 + MIR SINE MIR 72 197 -65 6350 189 56 43 chr5 38409669 38411703 -164673829 + L1MB3 LINE L1 923 2978 -3404 2931 275 112 16 chr5 38411724 38411878 -164673654 + L1MB3 LINE L1 3164 3302 -3080 2267 77 0 7 chr5 38411878 38412178 -164673354 + AluY SINE Alu 1 298 -13 2931 275 112 16 chr5 38412178 38413726 -164671806 + L1MB3 LINE L1 3302 5033 -1349 243 0 0 0 chr5 38413726 38413753 -164671779 + (TG)n Simple_repeat Simple_repeat 2 28 0 241 83 0 0 chr5 38413774 38413822 -164671710 - LTR66 LTR ERVL -169 441 394 26 0 0 0 chr5 38413951 38413977 -164671555 + AT_rich Low_complexity Low_complexity 1 26 0 3646 197 13 23 chr5 38414262 38415191 -164670341 + L1MB3 LINE L1 5325 6247 -172 22 0 0 0 chr5 38415932 38415954 -164669578 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr5 38416115 38416139 -164669393 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2606 91 3 5 chr5 38416414 38416786 -164668746 + L1PA8 LINE L1 5800 6170 -2 24 0 0 0 chr5 38418332 38418356 -164667176 + AT_rich Low_complexity Low_complexity 1 24 0 2166 115 0 3 chr5 38418401 38418713 -164666819 - AluSx SINE Alu -1 311 1 246 305 92 28 chr5 38419729 38419870 -164665662 + LTR67 LTR ERVL 400 549 -8 223 280 0 0 chr5 38421621 38421671 -164663861 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 332 240 37 0 chr5 38421672 38421781 -164663751 - L1MC4 LINE L1 -1139 6646 6570 186 189 0 0 chr5 38421783 38421820 -164663712 + (TA)n Simple_repeat Simple_repeat 1 37 0 247 154 5 0 chr5 38423568 38423643 -164661889 - LTR66 LTR ERVL 0 520 394 305 214 0 14 chr5 38423643 38423713 -164661819 - L1MCa LINE L1 -4363 2063 1995 25 51 0 0 chr5 38423782 38423821 -164661711 + AT_rich Low_complexity Low_complexity 1 39 0 369 0 0 0 chr5 38423821 38423862 -164661670 + (CA)n Simple_repeat Simple_repeat 2 42 0 1007 193 115 81 chr5 38423862 38424001 -164661531 - MLT2C1 LTR ERVL -65 332 199 432 0 0 0 chr5 38424001 38424049 -164661483 + (TG)n Simple_repeat Simple_repeat 1 48 0 1007 193 115 81 chr5 38424049 38424230 -164661302 - MLT2C1 LTR ERVL -198 199 1 1053 196 121 12 chr5 38424486 38424726 -164660806 - MLT1C LTR MaLR -201 266 1 1722 100 34 4 chr5 38424794 38425063 -164660469 - L1PA10 LINE L1 -5 6163 5887 273 154 0 19 chr5 38425474 38425526 -164660006 + LTR22 LTR ERVK 3 53 -527 * 1518 206 48 6 chr5 38425504 38425839 -164659693 + LTR22 LTR ERVK 161 509 -71 237 297 11 11 chr5 38426090 38426181 -164659351 + GA-rich Low_complexity Low_complexity 2 92 0 617 291 74 14 chr5 38426359 38427006 -164658526 + L1ME3 LINE L1 5440 6161 -1 361 239 132 129 chr5 38427040 38427435 -164658097 + MER20B DNA MER1_type 315 713 -70 2236 147 23 52 chr5 38427435 38427876 -164657656 + MSTA LTR MaLR 1 428 0 361 239 132 129 chr5 38427876 38427944 -164657588 + MER20B DNA MER1_type 713 779 -4 302 342 83 19 chr5 38427959 38428225 -164657307 - L2 LINE L2 -65 3248 2966 189 0 0 0 chr5 38430139 38430160 -164655372 + (A)n Simple_repeat Simple_repeat 1 21 0 369 248 23 54 chr5 38430336 38430465 -164655067 - L2 LINE L2 -12 3301 3177 863 192 26 0 chr5 38430480 38430673 -164654859 + L1PBa LINE L1 3 200 -6663 9114 127 16 3 chr5 38430675 38432765 -164652767 + L1PBa LINE L1 636 2940 -3923 404 176 0 0 chr5 38432765 38432839 -164652693 + AluJ/FRAM SINE Alu 229 302 0 261 341 55 0 chr5 38432912 38433003 -164652529 + HAL1 LINE L1 588 683 -1824 800 239 101 5 chr5 38433004 38433213 -164652319 + MLT1E2 LTR MaLR 5 233 -393 26 0 0 0 chr5 38433213 38433239 -164652293 + AT_rich Low_complexity Low_complexity 1 26 0 378 351 62 28 chr5 38433286 38433639 -164651893 + HAL1 LINE L1 743 1107 -1400 313 274 48 8 chr5 38433702 38433826 -164651706 + HAL1 LINE L1 1260 1388 -1119 996 242 239 46 chr5 38433911 38434401 -164651131 + MLT1E1 LTR MaLR 5 612 -42 2365 81 3 0 chr5 38434401 38434699 -164650833 - AluY SINE Alu -12 299 1 996 242 239 46 chr5 38434699 38434753 -164650779 + MLT1E1 LTR MaLR 612 654 0 263 267 0 13 chr5 38435341 38435416 -164650116 + MLT1I LTR MaLR 118 191 -218 247 240 40 13 chr5 38435568 38435643 -164649889 + MLT1I LTR MaLR 320 396 -13 1440 239 48 50 chr5 38435913 38436411 -164649121 + MLT1D LTR MaLR 1 497 -8 993 233 42 58 chr5 38436471 38436784 -164648748 + MLT1E2 LTR MaLR 311 618 -8 265 207 167 66 chr5 38436816 38437014 -164648518 - HAL1 LINE L1 -292 2215 1998 350 339 89 26 chr5 38437222 38437526 -164648006 - HAL1 LINE L1 -811 1696 1374 643 330 109 50 chr5 38437777 38438235 -164647297 + L2 LINE L2 2829 3313 0 303 355 93 17 chr5 38438250 38438422 -164647110 - HAL1 LINE L1 -1680 827 643 21 36 0 0 chr5 38439210 38439238 -164646294 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr5 38440570 38440602 -164644930 + AT_rich Low_complexity Low_complexity 1 32 0 225 254 34 17 chr5 38440811 38440870 -164644662 + MLT1E LTR MaLR 3 62 -562 992 274 69 29 chr5 38440953 38441332 -164644200 + MLT1E LTR MaLR 200 593 0 3667 93 309 0 chr5 38441944 38442575 -164642957 - LTR12 LTR ERV1 0 826 1 1750 155 17 0 chr5 38443028 38443325 -164642207 - AluSq SINE Alu -11 302 1 1014 206 14 37 chr5 38444036 38444238 -164641294 + MER58A DNA MER1_type 12 210 -2210 2466 58 0 0 chr5 38444238 38444533 -164640999 + AluY SINE Alu 1 295 -16 1014 206 14 37 chr5 38444533 38444548 -164640984 + MER58A DNA MER1_type 210 224 0 23 0 0 0 chr5 38445022 38445045 -164640487 + AT_rich Low_complexity Low_complexity 1 23 0 256 273 122 50 chr5 38445280 38445419 -164640113 - LTR1B LTR ERV1 -74 752 604 * 2005 102 14 7 chr5 38445416 38445709 -164639823 + THE1B LTR MaLR 70 364 0 315 225 8 100 chr5 38445709 38445829 -164639703 + MER67C LTR ERV1 295 403 -307 2406 41 41 3 chr5 38446093 38446385 -164639147 + AluY SINE Alu 1 303 -8 25 51 0 0 chr5 38446690 38446729 -164638803 + AT_rich Low_complexity Low_complexity 1 39 0 1884 280 63 3 chr5 38446980 38447569 -164637963 - MLT1E2 LTR MaLR 0 626 3 27 29 0 0 chr5 38448536 38448570 -164636962 + AT_rich Low_complexity Low_complexity 1 34 0 226 226 38 0 chr5 38450308 38450361 -164635171 - L1MD3 LINE L1 -1328 6667 6613 216 0 0 0 chr5 38450407 38450431 -164635101 + (TA)n Simple_repeat Simple_repeat 1 24 0 869 237 14 3 chr5 38451079 38451353 -164634179 - MER74C LTR ERVL -20 440 88 540 293 142 13 chr5 38451349 38451588 -164633944 + MLT2B1 LTR ERVL 157 426 -94 * 4701 30 4 0 chr5 38451745 38452335 -164633197 + L1PA3 LINE L1 5585 6176 0 25 65 0 0 chr5 38452782 38452828 -164632704 + AT_rich Low_complexity Low_complexity 1 46 0 279 252 34 50 chr5 38453627 38453746 -164631786 + MLT1J1 LTR MaLR 286 402 -44 1503 181 10 45 chr5 38454044 38454358 -164631174 + AluJb SINE Alu 1 303 -9 389 274 27 41 chr5 38454470 38454616 -164630916 - MIR SINE MIR -11 251 108 1547 193 94 23 chr5 38454616 38454968 -164630564 + MLT1B LTR MaLR 1 377 -13 199 246 0 18 chr5 38455004 38455061 -164630471 - MIR SINE MIR -150 112 57 2196 137 0 0 chr5 38455844 38456151 -164629381 + AluSc SINE Alu 1 307 -2 2362 141 6 3 chr5 38456746 38457109 -164628423 - THE1B LTR MaLR 0 364 1 9793 124 49 5 chr5 38457110 38458596 -164626936 - THE1B-int LTR MaLR -28 1552 1 2436 125 5 16 chr5 38458596 38458964 -164626568 - THE1B LTR MaLR 0 364 1 522 299 28 6 chr5 38459259 38459436 -164626096 + MER20 DNA MER1_type 4 184 -35 435 198 8 16 chr5 38460426 38460552 -164624980 + GA-rich Low_complexity Low_complexity 3 127 0 195 186 0 0 chr5 38460706 38460749 -164624783 + GA-rich Low_complexity Low_complexity 2 44 0 2068 70 21 3 chr5 38460787 38461071 -164624461 - L1PA7 LINE L1 -3 6151 5863 2630 257 187 40 chr5 38462096 38463307 -164622225 + L1M2b LINE L1 1 1388 -5821 238 356 58 0 chr5 38464005 38464109 -164621423 + L1M2b LINE L1 1216 1325 -5884 7758 219 63 22 chr5 38464109 38466785 -164618747 + L1M2 LINE L1 787 3574 -3274 9953 199 73 24 chr5 38566793 38567665 -164517867 + L1MC1 LINE L1 50 878 -5548 419 122 61 0 chr5 38567665 38567747 -164517785 - L1PA13 LINE L1 -1 6162 6076 9953 199 73 24 chr5 38567747 38569452 -164516080 + L1MC1 LINE L1 878 2772 -3654 242 129 24 5 chr5 38569460 38569512 -164516020 - THE1A LTR MaLR -259 96 45 1179 247 11 39 chr5 38569553 38569913 -164515619 + L1MC1 LINE L1 4796 5145 -1281 1783 223 49 22 chr5 38569924 38569983 -164515549 - MSTB1 LTR MaLR -13 419 363 1916 154 36 36 chr5 38569983 38570347 -164515185 - THE1B LTR MaLR 0 364 1 1783 223 49 22 chr5 38570347 38570695 -164514837 - MSTB1 LTR MaLR -69 363 1 4542 189 64 36 chr5 38570704 38571480 -164514052 + L1MC1 LINE L1 5151 5986 -627 1846 191 57 24 chr5 38571480 38571898 -164513634 - MSTB1 LTR MaLR 0 432 1 4542 189 64 36 chr5 38571898 38572545 -164512987 + L1MC1 LINE L1 5986 6613 0 448 283 194 35 chr5 38573254 38573621 -164511911 - L2 LINE L2 0 3313 2889 26 30 0 0 chr5 38573702 38573735 -164511797 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr5 38574483 38574506 -164511026 + AT_rich Low_complexity Low_complexity 1 23 0 1421 128 0 0 chr5 38576015 38576226 -164509306 + AluSp SINE Alu 101 311 -2 23 86 0 0 chr5 38576368 38576426 -164509106 + AT_rich Low_complexity Low_complexity 1 58 0 958 65 16 0 chr5 38578584 38578708 -164506824 - AluSg/x SINE Alu -15 295 170 226 291 23 23 chr5 38579215 38579301 -164506231 - MLT1J2 LTR MaLR -22 428 343 225 0 0 0 chr5 38580155 38580180 -164505352 + (T)n Simple_repeat Simple_repeat 1 25 0 2257 195 71 0 chr5 38580212 38580632 -164504900 + MER70A LTR ERVL 22 471 -1 441 282 53 24 chr5 38581404 38581574 -164503958 - MLT1J2 LTR MaLR -237 213 39 261 111 0 0 chr5 38583348 38583384 -164502148 - MLT2B1 LTR ERVL 0 520 485 2341 159 18 30 chr5 38583496 38583935 -164501597 + Tigger2a DNA MER2_type 1 434 0 1252 238 141 22 chr5 38583935 38584187 -164501345 - MLT2B1 LTR ERVL -67 453 232 2285 102 0 0 chr5 38584187 38584482 -164501050 + AluSq SINE Alu 3 297 -16 1252 238 141 22 chr5 38584482 38584632 -164500900 - MLT2B1 LTR ERVL -288 232 3 1048 248 128 19 chr5 38584690 38585265 -164500267 - MER45B DNA AcHobo -10 1030 310 2612 195 7 36 chr5 38585265 38585814 -164499718 + Tigger1 DNA MER2_type 1 533 -1885 1982 155 28 11 chr5 38585814 38586169 -164499363 + Tigger1 DNA MER2_type 755 1115 -1303 11569 213 41 19 chr5 38586179 38589893 -164495639 + L1MC/D LINE L1 2245 5877 -1065 2268 82 3 0 chr5 38589893 38590185 -164495347 + AluY SINE Alu 1 293 -18 11569 213 41 19 chr5 38590185 38590296 -164495236 + L1MC/D LINE L1 5877 5984 -958 1840 201 12 12 chr5 38590296 38590332 -164495200 + L1MA5 LINE L1 5894 5929 -371 264 91 0 0 chr5 38590332 38590376 -164495156 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1840 201 12 12 chr5 38590376 38590736 -164494796 + L1MA5 LINE L1 5928 6300 0 11569 213 41 19 chr5 38590736 38590758 -164494774 + L1MC/D LINE L1 5984 6199 -743 21 36 0 0 chr5 38591316 38591344 -164494188 + AT_rich Low_complexity Low_complexity 1 28 0 2028 100 21 3 chr5 38592089 38592379 -164493153 + AluSg SINE Alu 1 295 -15 1612 187 101 61 chr5 38593358 38593834 -164491698 - MER50 LTR ERV1 0 734 240 245 157 20 39 chr5 38593944 38593995 -164491537 - MER50 LTR ERV1 -675 59 10 1587 158 55 68 chr5 38594524 38594904 -164490628 + THE1C LTR MaLR 1 375 0 27 49 0 0 chr5 38596206 38596247 -164489285 + AT_rich Low_complexity Low_complexity 1 41 0 2239 77 7 13 chr5 38597214 38597512 -164488020 - AluY SINE Alu -15 296 1 2149 187 9 18 chr5 38597552 38597990 -164487542 + Tigger2a DNA MER2_type 1 434 0 437 227 42 155 chr5 38598104 38598505 -164487027 - L1MD3 LINE L1 -10 7985 7630 2014 125 4 4 chr5 38599424 38599725 -164485807 + AluSc SINE Alu 1 301 0 23 0 0 0 chr5 38599826 38599849 -164485683 + AT_rich Low_complexity Low_complexity 1 23 0 310 294 55 18 chr5 38600047 38600210 -164485322 - L1ME1 LINE L1 -15 6151 5983 838 227 0 0 chr5 38600254 38600417 -164485115 + MLT1A1 LTR MaLR 1 163 -202 1424 212 90 113 chr5 38600419 38600986 -164484546 + MLT2B3 LTR ERVL 1 554 0 1188 177 10 5 chr5 38600986 38601188 -164484344 + MLT1A1 LTR MaLR 161 363 -2 599 294 50 23 chr5 38601188 38601743 -164483789 - L1ME1 LINE L1 -224 5942 5345 376 282 86 6 chr5 38601781 38601955 -164483577 - L1ME1 LINE L1 -861 5285 5098 316 181 42 14 chr5 38601972 38602044 -164483488 + MLT1B LTR MaLR 308 381 -9 29 60 0 0 chr5 38602197 38602247 -164483285 + AT_rich Low_complexity Low_complexity 1 50 0 1581 196 92 11 chr5 38602739 38603086 -164482446 + THE1C LTR MaLR 1 375 0 1761 218 3 0 chr5 38603615 38603936 -164481596 - MLT2B2 LTR ERVL -193 322 1 617 258 81 25 chr5 38603959 38604242 -164481290 + L1ME1 LINE L1 5765 6063 -103 24 32 0 0 chr5 38605413 38605444 -164480088 + AT_rich Low_complexity Low_complexity 1 31 0 229 271 71 0 chr5 38607487 38607572 -164477960 + L1ME LINE L1 5690 5780 -341 23 54 0 0 chr5 38607636 38607673 -164477859 + AT_rich Low_complexity Low_complexity 1 37 0 231 61 0 0 chr5 38607722 38607755 -164477777 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 618 131 0 10 chr5 38607766 38607865 -164477667 + MSTA LTR MaLR 1 98 -328 2285 79 41 0 chr5 38607877 38608169 -164477363 - AluY SINE Alu -2 309 6 2181 143 20 17 chr5 38608177 38608535 -164476997 - THE1B LTR MaLR -5 359 1 5423 106 1 5 chr5 38608535 38609272 -164476260 - THE1B-int LTR MaLR 0 1580 847 4682 92 1 44 chr5 38609272 38609970 -164475562 - THE1B-int LTR MaLR -910 670 3 2013 141 33 28 chr5 38609972 38610334 -164475198 - THE1B LTR MaLR 0 364 1 1554 195 14 17 chr5 38610351 38610648 -164474884 + MSTA LTR MaLR 133 428 0 8364 179 33 36 chr5 38610656 38611011 -164474521 + MSTA-int LTR MaLR 10 365 -1286 2330 86 3 3 chr5 38611011 38611303 -164474229 - AluY SINE Alu -19 292 1 8364 179 33 36 chr5 38611303 38612594 -164472938 + MSTA-int LTR MaLR 365 1651 0 2121 173 58 15 chr5 38612594 38613004 -164472528 + MSTA LTR MaLR 1 428 0 204 163 0 0 chr5 38613045 38613088 -164472444 + (CA)n Simple_repeat Simple_repeat 1 43 0 1536 256 66 41 chr5 38613121 38613428 -164472104 + L1ME2 LINE L1 5298 5596 -568 1983 218 31 12 chr5 38613428 38613851 -164471681 + MSTB1 LTR MaLR 1 431 -1 1536 256 66 41 chr5 38613851 38614378 -164471154 + L1ME2 LINE L1 5596 6153 -11 276 233 17 0 chr5 38616301 38616361 -164469171 - MIR SINE MIR -135 127 67 2012 101 0 7 chr5 38617267 38617615 -164467917 - AluSc SINE Alu 0 352 7 1620 110 0 0 chr5 38618107 38618325 -164467207 - AluSq SINE Alu -95 218 1 2334 171 20 22 chr5 38618535 38619032 -164466500 - L1MB3 LINE L1 -3 6180 5685 22 35 0 0 chr5 38619491 38619520 -164466012 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr5 38620908 38620948 -164464584 + AT_rich Low_complexity Low_complexity 1 40 0 1938 143 48 28 chr5 38621290 38621647 -164463885 - THE1B LTR MaLR 0 364 1 10344 121 31 5 chr5 38621647 38623181 -164462351 - THE1C-int LTR MaLR 0 1580 6 2104 127 38 24 chr5 38623186 38623556 -164461976 - THE1C LTR MaLR 0 375 1 251 383 86 0 chr5 38624344 38624506 -164461026 + L2 LINE L2 1846 2021 -1293 321 315 0 22 chr5 38625230 38625322 -164460210 - L2 LINE L2 -33 3280 3191 2531 46 3 3 chr5 38625950 38626257 -164459275 - AluY SINE Alu -4 307 1 358 200 3 16 chr5 38626619 38626702 -164458830 + MER21A LTR ERV1 1 83 -780 453 197 16 88 chr5 38626803 38626987 -164458545 + MER21A LTR ERV1 74 310 -397 1218 169 35 28 chr5 38626992 38627247 -164458285 + MLT2A2 LTR ERVL 1 257 -196 1823 126 11 8 chr5 38627267 38627528 -164458004 - AluSx SINE Alu -45 267 6 756 244 122 13 chr5 38627559 38627788 -164457744 + MLT2B3 LTR ERVL 255 508 -46 2852 209 13 107 chr5 38627861 38628684 -164456848 + MER21A LTR ERV1 159 904 -27 2676 109 41 5 chr5 38628718 38629130 -164456402 + MSTA LTR MaLR 1 427 -1 210 324 29 37 chr5 38630162 38630298 -164455234 - MER5A DNA MER1_type -23 166 32 4401 130 3 31 chr5 38630351 38630998 -164454534 - L1PA12 LINE L1 0 6168 5573 1896 159 23 0 chr5 38630998 38631124 -164454408 + AluSx SINE Alu 1 123 -189 450 0 0 0 chr5 38631124 38631174 -164454358 + (CA)n Simple_repeat Simple_repeat 2 51 0 1896 159 23 0 chr5 38631174 38631349 -164454183 + AluSx SINE Alu 123 309 -3 4401 130 3 31 chr5 38631349 38631552 -164453980 - L1PA12 LINE L1 -595 5573 5366 2292 184 0 0 chr5 38631557 38631976 -164453556 + L1P LINE L1 4462 4880 -1266 1694 183 7 90 chr5 38632263 38632621 -164452911 - MLT2C1 LTR ERVL -1 396 79 1939 149 0 3 chr5 38632621 38632916 -164452616 - AluSq SINE Alu -19 294 1 1694 183 7 90 chr5 38632916 38632989 -164452543 - MLT2C1 LTR ERVL -318 79 1 868 148 14 32 chr5 38633665 38634013 -164451519 + ERVL-D LTR ERVL 5270 5757 0 1776 174 21 72 chr5 38634013 38634444 -164451088 + MLT2D LTR ERVL 1 409 -5 23 0 0 0 chr5 38636438 38636461 -164449071 + AT_rich Low_complexity Low_complexity 1 23 0 1372 269 111 39 chr5 38637033 38637938 -164447594 - L1ME3 LINE L1 -55 6107 5134 1796 305 72 4 chr5 38637966 38638704 -164446828 - L1ME1 LINE L1 -5 6161 5374 2026 150 46 9 chr5 38688942 38689289 -164396243 - THE1-int LTR MaLR -259 1321 962 1483 224 57 5 chr5 38689725 38690108 -164395424 + MLT1C LTR MaLR 65 467 0 399 227 93 47 chr5 38690108 38690257 -164395275 - MARNA DNA Mariner -118 468 313 2484 111 6 0 chr5 38690270 38690623 -164394909 - THE1A LTR MaLR 0 355 1 2165 131 0 3 chr5 38690658 38690972 -164394560 - AluSq SINE Alu 0 313 1 351 345 47 0 chr5 38691027 38691198 -164394334 - MIR SINE MIR -6 256 78 1787 277 76 34 chr5 38692390 38693263 -164392269 + L1ME3A LINE L1 5257 6165 -5 2179 24 0 0 chr5 38693867 38694121 -164391411 + L1PA2 LINE L1 5902 6155 0 201 111 0 56 chr5 38694345 38694381 -164391151 + (TAG)n Simple_repeat Simple_repeat 1 34 0 471 268 166 29 chr5 38694449 38694763 -164390769 + L1MCc LINE L1 1162 1518 -4905 290 297 65 38 chr5 38695096 38695493 -164390039 + L1MCc LINE L1 1961 2368 -4754 24 67 0 0 chr5 38695625 38695670 -164389862 + AT_rich Low_complexity Low_complexity 1 45 0 317 153 34 0 chr5 38696475 38696534 -164388998 - L1M4 LINE L1 -3124 3022 2962 1471 98 5 0 chr5 38697017 38697232 -164388300 - L1P LINE L1 -3368 2778 2563 922 208 84 60 chr5 38697564 38697848 -164387684 - MLT1B LTR MaLR -89 301 11 709 275 66 24 chr5 38698084 38698548 -164386984 + L1MCc LINE L1 2839 3286 -3655 1580 309 77 17 chr5 38698551 38699882 -164385650 + L1MCc LINE L1 3868 5278 -1663 802 241 19 11 chr5 38699891 38700207 -164385325 + MLT1A1 LTR MaLR 1 365 0 735 311 102 33 chr5 38700207 38700806 -164384726 + L1MCc LINE L1 5286 5925 -1016 273 167 69 14 chr5 38700909 38700981 -164384551 + L1ME LINE L1 5665 5740 -426 2763 133 28 7 chr5 38701006 38701402 -164384130 + MLT2A1 LTR ERVL 1 408 -36 315 0 0 0 chr5 38701402 38701437 -164384095 + (CA)n Simple_repeat Simple_repeat 2 36 0 2763 133 28 7 chr5 38701437 38701475 -164384057 + MLT2A1 LTR ERVL 408 444 0 30593 83 8 3 chr5 38701487 38705510 -164380022 + HERVL-A1 LTR ERVL 2 4044 -1610 1690 209 31 38 chr5 38705735 38706152 -164379380 - MER47B DNA MER2_type -4 414 1 195 299 45 15 chr5 38706314 38706381 -164379151 - L2 LINE L2 0 3313 3245 1982 238 51 9 chr5 38706665 38707118 -164378414 + MER70A LTR ERVL 1 472 0 344 286 77 0 chr5 38707216 38707307 -164378225 - MER58A DNA MER1_type -5 102 5 199 288 12 12 chr5 38707333 38707413 -164378119 - MER5C DNA MER1_type -46 278 199 1428 97 15 0 chr5 38707813 38708019 -164377513 - L1PA7 LINE L1 -2 6152 5944 1536 152 17 0 chr5 38708148 38708385 -164377147 + AluSg SINE Alu 54 294 -16 21 0 0 0 chr5 38708640 38708661 -164376871 + AT_rich Low_complexity Low_complexity 1 21 0 342 263 93 8 chr5 38709198 38709316 -164376216 + L2 LINE L2 3169 3296 -17 214 296 63 42 chr5 38710174 38710271 -164375261 + L2 LINE L2 3164 3266 -47 2104 122 3 7 chr5 38710271 38710575 -164374957 + AluSq SINE Alu 1 303 -10 214 296 63 42 chr5 38710575 38710619 -164374913 + L2 LINE L2 3266 3308 -5 1942 141 11 0 chr5 38710663 38710960 -164374572 + AluSx SINE Alu 3 302 0 305 295 36 27 chr5 38711279 38711391 -164374141 - MIR SINE MIR -63 145 33 922 299 103 19 chr5 38711395 38712025 -164373507 + L2 LINE L2 2523 3223 -90 717 214 0 8 chr5 38712094 38712225 -164373307 - FLAM_A SINE Alu -3 130 1 451 240 99 24 chr5 38712456 38712732 -164372800 + L1MC/D LINE L1 5545 5852 -299 2443 174 41 30 chr5 38712808 38713534 -164371998 + L1M4 LINE L1 4927 5666 -508 1596 167 36 14 chr5 38713534 38713834 -164371698 - AluJb SINE Alu 0 306 1 2443 174 41 30 chr5 38713834 38713984 -164371548 + L1M4 LINE L1 5666 5813 -361 18886 139 19 89 chr5 38714346 38718396 -164367136 - L1P LINE L1 -2366 3780 12 22 35 0 0 chr5 38719779 38719808 -164365724 + AT_rich Low_complexity Low_complexity 1 29 0 32 43 0 0 chr5 38720047 38720093 -164365439 + AT_rich Low_complexity Low_complexity 1 46 0 780 22 0 0 chr5 38720175 38720267 -164365265 + L1PA7 LINE L1 6060 6151 -3 25 0 0 0 chr5 38720893 38720918 -164364614 + AT_rich Low_complexity Low_complexity 1 25 0 239 212 76 15 chr5 38722556 38722622 -164362910 + L1M4 LINE L1 5739 5808 -366 2631 205 68 31 chr5 38722838 38723478 -164362054 + L1MB8 LINE L1 5431 6101 -77 1450 175 33 75 chr5 38723478 38723838 -164361694 + MER7A DNA MER2_type 4 346 0 2631 205 68 31 chr5 38723838 38723903 -164361629 + L1MB8 LINE L1 6101 6162 -16 230 140 0 20 chr5 38723912 38723962 -164361570 - LTR66 LTR ERVL -172 438 390 23 33 0 0 chr5 38724657 38724687 -164360845 + AT_rich Low_complexity Low_complexity 1 30 0 414 69 0 0 chr5 38725213 38725271 -164360261 + (GA)n Simple_repeat Simple_repeat 2 59 0 11430 150 104 32 chr5 38725271 38725332 -164360200 - Tigger1 DNA MER2_type -1 2417 2362 2653 52 0 0 chr5 38725332 38725640 -164359892 - AluY SINE Alu -2 309 2 11430 150 104 32 chr5 38725640 38725668 -164359864 - Tigger1 DNA MER2_type -56 2362 2337 1839 181 29 54 chr5 38725668 38726111 -164359421 + MSTB1 LTR MaLR 1 432 0 11430 150 104 32 chr5 38726111 38726901 -164358631 - Tigger1 DNA MER2_type -81 2337 1605 2017 117 14 3 chr5 38726901 38727184 -164358348 + AluSx SINE Alu 1 286 -26 11430 150 104 32 chr5 38727184 38728556 -164356976 - Tigger1 DNA MER2_type -813 1605 2 1630 204 20 52 chr5 38728728 38729131 -164356401 + MLT1B LTR MaLR 1 390 0 4471 216 19 18 chr5 38729733 38730180 -164355352 - L1 LINE L1 -2095 4051 3606 297 0 0 0 chr5 38730180 38730213 -164355319 + (TG)n Simple_repeat Simple_repeat 2 34 0 4471 216 19 18 chr5 38730213 38730892 -164354640 - L1 LINE L1 -2540 3606 2924 2665 81 6 0 chr5 38731339 38731685 -164353847 - THE1A LTR MaLR -2 353 6 10590 116 14 10 chr5 38731690 38733263 -164352269 - THE1A-int LTR MaLR 0 1580 2 283 128 58 0 chr5 38733552 38733638 -164351894 + (TA)n Simple_repeat Simple_repeat 2 92 0 1464 178 96 37 chr5 38734467 38734821 -164350711 + THE1C LTR MaLR 1 375 0 7112 213 24 3 chr5 38734821 38736225 -164349307 + THE1C-int LTR MaLR 1 1433 -218 1885 139 14 3 chr5 38736225 38736513 -164349019 - MER50-int LTR ERV1 -6908 297 7 2170 153 49 8 chr5 38736513 38736880 -164348652 - MER50 LTR ERV1 -12 722 341 1499 164 143 0 chr5 38736885 38737165 -164348367 + L1PA16 LINE L1 5838 6157 -9 880 36 9 0 chr5 38737187 38737299 -164348233 - MLT2C2 LTR ERVL -351 113 1 293 213 83 102 chr5 38737473 38737581 -164347951 - L2 LINE L2 -12 3301 3196 638 264 117 13 chr5 38738184 38738423 -164347109 - LTR16B LTR ERVL -153 311 48 224 109 0 43 chr5 38738686 38738732 -164346800 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 3339 117 17 46 chr5 38739203 38739835 -164345697 - MER4B LTR ERV1 0 779 1 2679 87 90 8 chr5 38740738 38741127 -164344405 + MER4C LTR ERV1 45 465 0 1874 153 94 30 chr5 38741131 38741429 -164344103 + MER4C-int LTR ERV1 2 330 -6268 1474 276 166 94 chr5 38741429 38742048 -164343484 - MER4A LTR ERV1 0 664 1 1874 153 94 30 chr5 38742048 38742121 -164343411 + MER4C-int LTR ERV1 330 397 -6201 228 176 118 44 chr5 38742238 38742306 -164343226 - MER54A LTR ERVL 0 901 829 2905 150 58 53 chr5 38742307 38743268 -164342264 + MER4-int LTR ERV1 1828 2485 -4113 1217 188 57 71 chr5 38742644 38742722 -164342810 + LTR57-int LTR ERVL 988 1066 -4277 * 2258 121 3 0 chr5 38742722 38743029 -164342503 + AluSq SINE Alu 1 308 -5 1217 188 57 71 chr5 38743029 38743317 -164342215 + LTR57-int LTR ERVL 1066 1349 -3994 292 130 0 72 chr5 38743294 38743363 -164342169 + MER4-int LTR ERV1 1764 1827 -4931 * 560 104 42 21 chr5 38743363 38743459 -164342073 + MER4A LTR ERV1 1 98 -566 1732 138 37 39 chr5 38743459 38743800 -164341732 + MER4A LTR ERV1 261 664 0 2735 81 82 57 chr5 38743803 38744304 -164341228 + MER4A-int LTR ERV1 1 562 -6036 3908 139 21 43 chr5 38744317 38745255 -164340277 + MER4-int LTR ERV1 198 1170 -5588 4421 91 57 13 chr5 38745271 38745972 -164339560 + MER4-int LTR ERV1 1764 2495 -4103 1185 162 127 0 chr5 38745972 38746200 -164339332 - LTR8 LTR ERV1 -434 257 1 16154 112 60 35 chr5 38746200 38746392 -164339140 + MER4-int LTR ERV1 1862 2048 -4550 2364 96 0 0 chr5 38746392 38746684 -164338848 - AluSg SINE Alu -18 292 1 16154 112 60 35 chr5 38746684 38748618 -164336914 + MER4-int LTR ERV1 2048 3933 -2665 2248 79 10 14 chr5 38748618 38748909 -164336623 + AluY SINE Alu 5 294 -17 16154 112 60 35 chr5 38748909 38749231 -164336301 + MER4-int LTR ERV1 3933 4246 -2352 2164 118 0 0 chr5 38749231 38749519 -164336013 + AluSx SINE Alu 13 300 -12 16154 112 60 35 chr5 38749519 38750071 -164335461 + MER4-int LTR ERV1 4246 4783 -1815 7868 34 29 2 chr5 38750071 38750945 -164334587 - MER11D LTR ERVK 0 897 1 16154 112 60 35 chr5 38750945 38751120 -164334412 + MER4-int LTR ERV1 4783 6594 -4 478 128 29 69 chr5 38751130 38751232 -164334300 + MER4A LTR ERV1 1 98 -566 1792 144 17 25 chr5 38751232 38751580 -164333952 + MER4A LTR ERV1 261 664 0 1141 119 4 73 chr5 38751580 38751841 -164333691 + MER4E-int LTR ERV1 1824 2066 -4692 * 11961 152 31 42 chr5 38751840 38753660 -164331872 + MER4E-int LTR ERV1 4218 6007 -591 1471 202 14 14 chr5 38753660 38753952 -164331580 + AluJb SINE Alu 1 292 -20 11961 152 31 42 chr5 38753952 38754533 -164330999 + MER4E-int LTR ERV1 6007 6593 -5 2420 80 10 0 chr5 38754546 38754848 -164330684 + AluY SINE Alu 1 305 -6 1579 74 30 89 chr5 38754859 38755128 -164330404 + MER4C LTR ERV1 1 253 -212 1947 143 76 25 chr5 38755129 38755486 -164330046 - THE1C LTR MaLR 0 375 1 4316 194 7 36 chr5 38755490 38756461 -164329071 - THE1-int LTR MaLR -4 1731 711 1897 180 22 23 chr5 38756461 38756854 -164328678 - MLT2A2 LTR ERVL -144 309 1 611 263 26 6 chr5 38756870 38757026 -164328506 + MER69B DNA AcHobo 514 672 -554 2254 188 39 11 chr5 38757026 38757467 -164328065 + MER4E LTR ERV1 1 453 -326 198 0 0 0 chr5 38757467 38757489 -164328043 + (TTA)n Simple_repeat Simple_repeat 3 24 0 38910 88 6 9 chr5 38757489 38763638 -164321894 - L1PA6 LINE L1 -18 6136 11 2023 119 9 47 chr5 38763646 38763989 -164321543 + MER4E LTR ERV1 436 765 -14 2109 148 0 0 chr5 38763989 38764286 -164321246 - AluSx SINE Alu -15 297 1 1741 225 28 33 chr5 38764331 38764789 -164320743 + MLT1C LTR MaLR 10 465 -2 1614 211 51 73 chr5 38764789 38765120 -164320412 + MER69B DNA AcHobo 682 1019 -1507 1860 181 0 0 chr5 38765120 38765423 -164320109 + AluJb SINE Alu 2 304 -8 1614 211 51 73 chr5 38765423 38765472 -164320060 + MER69B DNA AcHobo 1019 1068 -1458 1754 183 18 50 chr5 38765472 38765855 -164319677 - MER93b LTR ERV1 -2 371 1 1614 211 51 73 chr5 38765855 38765869 -164319663 + MER69B DNA AcHobo 1068 1081 -1445 1769 206 90 38 chr5 38765869 38766242 -164319290 + MLT1D LTR MaLR 1 406 -99 2030 122 3 16 chr5 38766242 38766546 -164318986 + AluSx SINE Alu 1 300 -12 1769 206 90 38 chr5 38766546 38766652 -164318880 + MLT1D LTR MaLR 406 505 0 1614 211 51 73 chr5 38766652 38766802 -164318730 + MER69B DNA AcHobo 1081 1216 -10 349 163 0 0 chr5 38767250 38767299 -164318233 + AluSq SINE Alu 9 57 -251 2259 88 0 55 chr5 38767300 38767628 -164317904 + AluY SINE Alu 2 311 0 1658 116 0 29 chr5 38767631 38767872 -164317660 + AluSq SINE Alu 44 277 -36 832 58 33 0 chr5 38767877 38767998 -164317534 + (GAAA)n Simple_repeat Simple_repeat 3 127 0 2277 68 0 0 chr5 38769102 38769406 -164316126 + AluY SINE Alu 1 304 0 1045 142 6 11 chr5 38769455 38769631 -164315901 + AluJb SINE Alu 122 296 -16 1373 185 133 24 chr5 38769889 38770219 -164315313 + MER93b LTR ERV1 6 371 -2 198 71 0 0 chr5 38770493 38770521 -164315011 + (TA)n Simple_repeat Simple_repeat 2 29 0 7044 70 11 2 chr5 38770521 38772113 -164313419 - L1PA7 LINE L1 -3 6151 4548 1260 54 0 0 chr5 38772113 38772261 -164313271 - AluY SINE Alu -12 299 152 27401 114 9 71 chr5 38772261 38777118 -164308414 - L1PA7 LINE L1 -1593 4553 1 2081 124 3 0 chr5 38777146 38777436 -164308096 - AluSx SINE Alu -21 291 1 269 264 100 55 chr5 38777439 38777549 -164307983 - L1MC/D LINE L1 -2124 5684 5570 304 330 29 0 chr5 38777960 38778063 -164307469 - MIR SINE MIR -135 127 22 337 188 109 59 chr5 38778070 38778098 -164307434 - MIR SINE MIR 0 262 237 1583 172 89 56 chr5 38778098 38778435 -164307097 - MER7A DNA MER2_type 0 346 1 337 188 109 59 chr5 38778435 38778507 -164307025 - MIR SINE MIR -25 237 157 876 235 79 20 chr5 38778507 38778792 -164306740 - LTR16C LTR ERVL -2 481 193 470 244 87 8 chr5 38778965 38779092 -164306440 - MIR SINE MIR -122 140 4 259 217 121 0 chr5 38779271 38779354 -164306178 - MER5A DNA MER1_type 0 189 97 484 133 10 20 chr5 38779796 38779894 -164305638 + CT-rich Low_complexity Low_complexity 3 99 0 641 186 0 0 chr5 38779897 38779999 -164305533 - FLAM_A SINE Alu -20 122 21 298 222 42 0 chr5 38780023 38780095 -164305437 - MER5A DNA MER1_type -80 109 35 292 196 98 54 chr5 38780691 38780783 -164304749 - L2 LINE L2 -7 3306 3211 327 150 0 0 chr5 38780807 38780867 -164304665 + (TG)n Simple_repeat Simple_repeat 1 60 0 1149 249 52 64 chr5 38781712 38782246 -164303286 + PABL_B LTR ERV1 1 667 0 2324 97 0 13 chr5 38782674 38782974 -164302558 + AluSx SINE Alu 1 296 -16 2827 102 11 5 chr5 38783466 38783839 -164301693 - THE1C LTR MaLR 0 375 1 209 259 0 0 chr5 38783978 38784032 -164301500 - MIR SINE MIR -105 157 104 437 266 54 58 chr5 38784223 38784457 -164301075 - L1M4 LINE L1 -1300 4846 4612 2218 106 17 0 chr5 38784457 38784758 -164300774 + AluSp SINE Alu 1 306 -7 437 266 54 58 chr5 38784758 38784782 -164300750 - L1M4 LINE L1 -1534 4612 4589 1844 151 3 19 chr5 38784815 38785166 -164300366 - MER4A LTR ERV1 0 664 261 578 141 10 20 chr5 38785166 38785265 -164300267 - MER4A LTR ERV1 -566 98 1 1820 102 16 12 chr5 38785304 38785558 -164299974 + L1PA10 LINE L1 5911 6165 -3 16362 107 55 21 chr5 38785575 38785752 -164299780 - MER4A-int LTR ERV1 -18 6580 6410 2109 120 0 20 chr5 38785752 38786074 -164299458 + AluSq SINE Alu 1 313 0 16362 107 55 21 chr5 38786074 38788550 -164296982 - MER4A-int LTR ERV1 -188 6410 3837 4483 121 81 24 chr5 38788549 38789441 -164296091 - MER4A-int LTR ERV1 -2917 3681 2739 * 1254 183 70 4 chr5 38789443 38789684 -164295848 + LTR8 LTR ERV1 1 257 -434 729 118 16 24 chr5 38789684 38789811 -164295721 - MER4A-int LTR ERV1 -4103 2495 2370 6396 84 52 0 chr5 38789811 38790664 -164294868 - MER11D LTR ERVK 0 897 1 39807 42 5 3 chr5 38790664 38792583 -164292949 - HERVK11D LTR ERVK 0 7752 5838 2422 76 7 0 chr5 38792583 38792886 -164292646 + AluY SINE Alu 1 305 -6 39807 42 5 3 chr5 38792886 38796501 -164289031 - HERVK11D LTR ERVK -1914 5838 1 6824 88 10 1 chr5 38796501 38797390 -164288142 - MER11D LTR ERVK 0 897 1 336 118 0 0 chr5 38797390 38797441 -164288091 - MER4A-int LTR ERV1 -3450 2136 2086 * 1237 144 35 0 chr5 38797435 38797637 -164287895 - MER4A-int LTR ERV1 -4024 991 783 11414 136 21 22 chr5 38797663 38800638 -164284894 + L1P3 LINE L1 10 2998 -3463 11147 97 15 15 chr5 38800738 38800900 -164284632 + L1P3 LINE L1 3518 3679 -2782 180 0 0 0 chr5 38800900 38800920 -164284612 + (CA)n Simple_repeat Simple_repeat 2 21 0 11147 97 15 15 chr5 38800920 38802405 -164283127 + L1P3 LINE L1 3679 5164 -1297 1200 199 91 62 chr5 38802380 38802732 -164282800 + L1MD3 LINE L1 7904 8265 -45 * 2203 87 21 3 chr5 38802756 38803042 -164282490 - AluSx SINE Alu -21 291 1 1715 166 19 80 chr5 38803634 38804049 -164281483 + LTR9 LTR ERV1 1 390 -222 569 202 83 63 chr5 38804018 38804302 -164281230 + LTR19C LTR ERV1 316 779 0 * 1614 138 25 28 chr5 38804588 38804871 -164280661 - LTR23 LTR ERV1 0 437 156 38 0 0 0 chr5 38805150 38805188 -164280344 + AT_rich Low_complexity Low_complexity 1 38 0 926 236 98 41 chr5 38805739 38806108 -164279424 + MLT1B LTR MaLR 1 390 0 1798 173 42 12 chr5 38806554 38806890 -164278642 + MSTB LTR MaLR 1 346 -80 445 233 26 66 chr5 38806924 38807106 -164278426 - LTR34 LTR ERV1 -246 453 187 * 1637 157 31 41 chr5 38807105 38807423 -164278109 - MER50 LTR ERV1 -22 712 398 1443 120 50 17 chr5 38807419 38807660 -164277872 - MER50 LTR ERV1 -485 249 1 * 1027 169 62 31 chr5 38807660 38807885 -164277647 + MLT1B LTR MaLR 159 390 0 2148 113 10 3 chr5 38808060 38808362 -164277170 + AluY SINE Alu 1 304 -7 326 278 146 7 chr5 38808557 38808701 -164276831 - MIR SINE MIR -6 256 93 5378 73 12 6 chr5 38809066 38809753 -164275779 + LTR8 LTR ERV1 1 691 0 835 226 103 148 chr5 38809839 38810557 -164274975 + LTR34 LTR ERV1 10 695 -4 3632 173 125 27 chr5 38810566 38811317 -164274215 + LTR1B LTR ERV1 2 826 0 1462 232 66 29 chr5 38811493 38811844 -164273688 - MLT1A2 LTR MaLR 0 396 1 239 291 55 55 chr5 38812613 38812723 -164272809 + MIR3 SINE MIR 45 154 -54 24 32 0 0 chr5 38812795 38812826 -164272706 + AT_rich Low_complexity Low_complexity 1 31 0 1601 118 175 48 chr5 38813275 38813709 -164271823 + MER1A DNA MER1_type 1 533 0 302 221 26 0 chr5 38813784 38813861 -164271671 - L2 LINE L2 -1 3312 3234 1937 129 7 39 chr5 38813897 38814229 -164271303 - AluSq SINE Alu 0 313 1 1969 150 30 122 chr5 38815303 38815763 -164269769 - MER47B DNA MER2_type 0 418 1 469 279 7 14 chr5 38816027 38816174 -164269358 - L3 LINE CR1 -251 1326 1181 455 311 192 17 chr5 38816518 38816878 -164268654 - L3 LINE CR1 -427 1150 728 516 281 41 63 chr5 38817018 38817527 -164268005 + L1ME4a LINE L1 5620 6117 -4 2420 95 0 7 chr5 38818459 38818765 -164266767 + AluSq SINE Alu 1 304 -9 227 198 73 83 chr5 38818779 38818875 -164266657 - L1ME4a LINE L1 -68 6053 5959 268 223 64 11 chr5 38819376 38819470 -164266062 + G-rich Low_complexity Low_complexity 4 102 0 264 77 0 0 chr5 38819783 38819822 -164265710 + (TG)n Simple_repeat Simple_repeat 2 40 0 1894 156 0 13 chr5 38820769 38820944 -164264588 - AluJo SINE Alu -6 306 135 1930 56 0 24 chr5 38820944 38821195 -164264337 - AluY SINE Alu -7 304 60 1894 156 0 13 chr5 38821195 38821327 -164264205 - AluJo SINE Alu -177 135 3 6078 57 26 1 chr5 38821525 38822293 -164263239 - L1PA7 LINE L1 -1 6153 5367 1846 228 6 0 chr5 38822348 38822707 -164262825 + MLT1A1 LTR MaLR 1 361 -4 29 28 0 0 chr5 38822707 38822743 -164262789 + AT_rich Low_complexity Low_complexity 1 36 0 621 221 43 43 chr5 38823210 38823373 -164262159 - MLT1H LTR MaLR 0 549 387 359 274 28 9 chr5 38823432 38823538 -164261994 + HAL1b LINE L1 395 502 -846 240 269 127 66 chr5 38823539 38823641 -164261891 + HAL1b LINE L1 536 630 -718 1793 190 65 14 chr5 38823641 38824009 -164261523 + MLT1B LTR MaLR 2 388 -2 240 269 127 66 chr5 38824009 38824103 -164261429 + HAL1b LINE L1 630 744 -604 1627 181 22 0 chr5 38824122 38824392 -164261140 + AluJb SINE Alu 1 276 -36 423 0 0 0 chr5 38824392 38824439 -164261093 + (TG)n Simple_repeat Simple_repeat 2 48 0 2355 110 0 0 chr5 38826444 38826745 -164258787 - AluSq SINE Alu -12 301 1 246 309 119 0 chr5 38826908 38826992 -164258540 - L2 LINE L2 -41 3231 3138 801 221 94 9 chr5 38827031 38827244 -164258288 - MIR SINE MIR -27 235 5 199 367 75 7 chr5 38827398 38827545 -164257987 - L2 LINE L2 -337 2977 2821 1840 144 87 31 chr5 38827686 38828041 -164257491 + THE1C LTR MaLR 1 375 0 194 0 39 0 chr5 38828592 38828618 -164256914 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2231 99 0 0 chr5 38828623 38828905 -164256627 - AluSp SINE Alu -31 282 1 2516 234 108 20 chr5 38829448 38830112 -164255420 + MER97a DNA MER1_type? 1 750 -144 2387 78 3 0 chr5 38830112 38830405 -164255127 - AluSp SINE Alu -19 294 1 2516 234 108 20 chr5 38830405 38830547 -164254985 + MER97a DNA MER1_type? 750 878 -16 581 307 57 57 chr5 38830562 38830914 -164254618 + LTR33 LTR ERVL 3 354 -167 489 286 31 21 chr5 38830920 38831112 -164254420 - LTR33 LTR ERVL -2 519 326 423 285 124 11 chr5 38831142 38831328 -164254204 - LTR33 LTR ERVL -312 209 3 1640 247 153 14 chr5 38831374 38831954 -164253578 + LTR50 LTR ERVL 2 662 -133 499 293 20 20 chr5 38831958 38832108 -164253424 + MLT1J2 LTR MaLR 277 426 -24 663 65 0 0 chr5 38833284 38833377 -164252155 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 626 212 18 0 chr5 38833378 38833491 -164252041 - FLAM_C SINE Alu -27 116 2 2354 186 72 67 chr5 38834022 38834354 -164251178 + MLT1E2 LTR MaLR 1 339 -287 563 241 9 0 chr5 38834354 38834470 -164251062 + FLAM_A SINE Alu 1 117 -16 2354 186 72 67 chr5 38834470 38834760 -164250772 + MLT1E2 LTR MaLR 339 626 0 238 271 35 0 chr5 38835237 38835322 -164250210 + MER113 DNA MER1_type? 4 91 -430 2109 139 0 16 chr5 38835345 38835661 -164249871 - AluSx SINE Alu -1 311 1 183 372 36 44 chr5 38835957 38836094 -164249438 - L2 LINE L2 0 3272 3137 1127 205 37 118 chr5 38836231 38836380 -164249152 + MLT1G LTR MaLR 11 170 -360 2649 220 29 0 chr5 38836380 38836931 -164248601 - MLT1F1 LTR MaLR 0 567 1 1127 205 37 118 chr5 38836931 38837173 -164248359 + MLT1G LTR MaLR 170 300 -230 1897 177 28 17 chr5 38837173 38837534 -164247998 + MLT1A1 LTR MaLR 1 365 0 1127 205 37 118 chr5 38837534 38837632 -164247900 + MLT1G LTR MaLR 300 404 -126 390 332 58 10 chr5 38837690 38837898 -164247634 + MIR SINE MIR 1 218 -44 584 274 97 49 chr5 38838304 38838656 -164246876 + MLT1J LTR MaLR 132 450 0 641 316 9 0 chr5 38839190 38839415 -164246117 - MIR SINE MIR -16 246 20 613 211 58 18 chr5 38839532 38839703 -164245829 - L1ME3A LINE L1 -22 6148 5971 773 243 102 49 chr5 38840653 38841080 -164244452 + LTR33 LTR ERVL 15 521 0 992 67 0 0 chr5 38841430 38841550 -164243982 - AluSg/x SINE Alu -13 299 180 1787 142 34 7 chr5 38893866 38894161 -164191371 - AluJb SINE Alu -9 303 1 495 232 56 50 chr5 38894398 38894596 -164190936 + L1ME4a LINE L1 5921 6119 -2 662 195 36 67 chr5 38895134 38895329 -164190203 - MER53 DNA DNA 0 189 1 414 0 0 0 chr5 38895359 38895405 -164190127 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 1931 175 30 9 chr5 38895454 38895791 -164189741 + MER2 DNA MER2_type 1 344 0 342 305 29 0 chr5 38896496 38896601 -164188931 + MIR3 SINE MIR 78 185 -23 1730 155 0 0 chr5 38896866 38897117 -164188415 + AluSq SINE Alu 1 251 -62 253 268 12 37 chr5 38897276 38897358 -164188174 - L2 LINE L2 0 3313 3234 2192 170 61 42 chr5 38897534 38897992 -164187540 + MLT1C LTR MaLR 1 467 0 1713 142 61 24 chr5 38897993 38898289 -164187243 + AluJb SINE Alu 1 307 -5 282 290 70 23 chr5 38898960 38899092 -164186440 - MIR SINE MIR -58 150 6 376 235 60 100 chr5 38899272 38899345 -164186187 - MIR SINE MIR -51 211 137 1970 149 17 3 chr5 38899345 38899646 -164185886 - AluJb SINE Alu -6 306 2 376 235 60 100 chr5 38899646 38899772 -164185760 - MIR SINE MIR -125 137 20 403 296 114 11 chr5 38899800 38899976 -164185556 - MER117 DNA MER1_type 0 197 4 1426 96 0 0 chr5 38900058 38900255 -164185277 + L1PA14 LINE L1 5960 6156 -5 2105 146 0 0 chr5 38900486 38900788 -164184744 + AluSx SINE Alu 1 302 -10 331 248 179 14 chr5 38900798 38900943 -164184589 - MIR SINE MIR 0 262 94 630 244 61 83 chr5 38901149 38901379 -164184153 + MER115 DNA AcHobo 302 526 -167 529 241 71 50 chr5 38901478 38901619 -164183913 + MER117 DNA MER1_type 54 197 0 * 715 253 6 0 chr5 38901619 38901785 -164183747 + MER115 DNA AcHobo 526 692 -1 347 298 33 13 chr5 38902104 38902255 -164183277 + LTR67 LTR ERVL 387 540 -17 1545 199 80 17 chr5 38902415 38902767 -164182765 + MLT1A2 LTR MaLR 1 374 0 399 175 116 84 chr5 38905025 38905232 -164180300 - MER34 LTR ERV1 -5 739 347 202 259 49 25 chr5 38905658 38905739 -164179793 + L2 LINE L2 3227 3309 -4 340 298 85 64 chr5 38905801 38906130 -164179402 + L2 LINE L2 2210 2545 -769 2684 192 59 9 chr5 38906131 38906689 -164178843 + L1MB2 LINE L1 5577 6162 -9 2724 187 72 19 chr5 38906935 38907521 -164178011 - LTR27 LTR ERV1 -16 620 1 30 0 0 0 chr5 38907667 38907697 -164177835 + AT_rich Low_complexity Low_complexity 1 30 0 217 153 17 34 chr5 38908066 38908125 -164177407 + T-rich Low_complexity Low_complexity 2 59 0 2032 131 50 39 chr5 38908786 38909146 -164176386 + THE1B LTR MaLR 1 364 0 189 171 0 0 chr5 38909407 38909442 -164176090 + GA-rich Low_complexity Low_complexity 2 36 0 605 263 77 29 chr5 38910044 38910253 -164175279 + MIR SINE MIR 40 258 -4 2725 179 69 49 chr5 38910750 38911427 -164174105 - LTR8 LTR ERV1 0 691 1 649 236 11 73 chr5 38911729 38911920 -164173612 + MER97a DNA MER1_type? 1 179 -715 2814 96 0 16 chr5 38911984 38912360 -164173172 - LTR8 LTR ERV1 0 691 322 1815 161 167 65 chr5 38912574 38912719 -164172813 - LTR49 LTR ERV1 0 595 466 1725 180 10 7 chr5 38912719 38913019 -164172513 + AluJb SINE Alu 1 301 -11 1815 161 167 65 chr5 38913019 38913413 -164172119 - LTR49 LTR ERV1 -129 466 1 475 99 0 14 chr5 38913484 38913555 -164171977 + LTR26B LTR ERV1 1 70 -461 3807 115 21 23 chr5 38913555 38914121 -164171411 + MER61E LTR ERV1 1 565 -4 3893 160 64 10 chr5 38914139 38914814 -164170718 - MER50 LTR ERV1 -23 711 1 2910 162 0 11 chr5 38914814 38915276 -164170256 + LTR26B LTR ERV1 75 531 0 1601 175 39 44 chr5 38915276 38915613 -164169919 + MLT1C LTR MaLR 29 363 -104 2983 166 101 37 chr5 38915616 38916268 -164169264 + LTR8A LTR ERV1 34 727 0 652 157 9 17 chr5 38916269 38916384 -164169148 + MLT1C LTR MaLR 352 465 -2 2089 174 32 108 chr5 38916436 38916907 -164168625 - MER61E LTR ERV1 -43 526 92 430 213 56 86 chr5 38916894 38917130 -164168402 - MER61E LTR ERV1 -455 324 1 * 854 214 113 39 chr5 38917130 38917544 -164167988 - LTR56 LTR ERV1 -20 556 9 1396 193 52 137 chr5 38918173 38918588 -164166944 - MER34C LTR ERV1 -3 582 133 2252 108 7 0 chr5 38918588 38918895 -164166637 - AluSq SINE Alu -2 311 3 1396 193 52 137 chr5 38918895 38918964 -164166568 - MER34C LTR ERV1 -452 133 155 1955 134 31 0 chr5 38918964 38919255 -164166277 + AluSq SINE Alu 7 306 -7 1396 193 52 137 chr5 38919255 38919366 -164166166 - MER34C LTR ERV1 -429 156 37 601 246 90 37 chr5 38919672 38919916 -164165616 + MIR SINE MIR 6 262 0 890 269 8 16 chr5 38919934 38920179 -164165353 + MIR SINE MIR 20 262 0 2113 104 0 14 chr5 38920331 38920652 -164164880 - AluSx SINE Alu 0 317 1 23 0 0 0 chr5 38921498 38921521 -164164011 + AT_rich Low_complexity Low_complexity 1 23 0 240 206 78 128 chr5 38922150 38922291 -164163241 + LTR67 LTR ERVL 2 135 -422 596 286 30 5 chr5 38922429 38922628 -164162904 + LTR67 LTR ERVL 354 557 0 1030 154 0 0 chr5 38922983 38923139 -164162393 - MLT2B1 LTR ERVL 0 520 365 681 149 0 10 chr5 38923142 38923397 -164162135 + AluJ SINE Alu 11 311 -1 286 157 20 0 chr5 38923411 38923462 -164162070 - MLT1A1 LTR MaLR -313 52 1 4165 182 103 10 chr5 38923477 38924361 -164161171 - Charlie1a DNA MER1_type -489 966 1 1897 144 33 16 chr5 38924542 38924847 -164160685 - AluSx SINE Alu -2 310 1 452 290 145 5 chr5 38924870 38925070 -164160462 - MIR SINE MIR -4 258 31 476 292 25 6 chr5 38925558 38925719 -164159813 + MIR SINE MIR 28 191 -71 459 195 76 34 chr5 38925974 38926092 -164159440 - MER103 DNA DNA -1 165 43 1677 157 105 0 chr5 38926145 38926450 -164159082 + MER44D DNA MER2_type 1 607 -2 261 343 35 21 chr5 38926777 38926920 -164158612 - MIR3 SINE MIR -27 181 37 224 196 39 0 chr5 38927489 38927540 -164157992 + GA-rich Low_complexity Low_complexity 4 56 0 200 153 51 17 chr5 38927692 38927751 -164157781 + T-rich Low_complexity Low_complexity 5 65 0 2047 157 27 29 chr5 38928525 38928743 -164156789 - MLT1B LTR MaLR 0 390 172 1960 120 4 0 chr5 38928743 38929019 -164156513 - AluSx SINE Alu -2 310 34 2047 157 27 29 chr5 38929019 38929176 -164156356 - MLT1B LTR MaLR -218 172 16 221 355 53 33 chr5 38929245 38929397 -164156135 + MIR3 SINE MIR 17 171 -37 6700 60 5 0 chr5 38929657 38930649 -164154883 - HERVL LTR ERVL -360 5294 4257 1411 78 16 3 chr5 38930649 38930844 -164154688 - MLT2A1 LTR ERVL -201 213 1 239 284 34 0 chr5 38932221 38932309 -164153223 + MLT1C LTR MaLR 1 91 -376 * 524 191 0 9 chr5 38932306 38932411 -164153121 + MLT1C LTR MaLR 364 467 0 247 261 141 11 chr5 38932879 38932971 -164152561 + MIR SINE MIR 79 182 -80 1248 299 28 14 chr5 38934003 38934428 -164151104 + LTR16A LTR ERVL 16 446 -4 288 243 23 10 chr5 38934886 38934985 -164150547 + MIR SINE MIR 54 152 -66 800 288 107 30 chr5 38935062 38935455 -164150077 - L3 LINE CR1 -100 1477 1055 472 313 88 51 chr5 38935760 38936134 -164149398 - MLT1L LTR MaLR -227 388 1 2141 104 31 0 chr5 38936263 38936551 -164148981 + AluSx SINE Alu 1 297 -15 248 53 26 0 chr5 38936553 38936591 -164148941 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 894 186 0 0 chr5 38936594 38936734 -164148798 - AluJb SINE Alu -26 286 147 315 304 138 6 chr5 38936870 38937051 -164148481 - L3 LINE CR1 -355 1222 1018 21 82 0 0 chr5 38937068 38937117 -164148415 + AT_rich Low_complexity Low_complexity 1 49 0 205 195 49 122 chr5 38937365 38937421 -164148111 - L3 LINE CR1 -547 1030 980 2270 125 3 0 chr5 38937421 38937725 -164147807 - AluSq SINE Alu -8 305 1 205 195 49 122 chr5 38937725 38937750 -164147782 - L3 LINE CR1 -597 980 955 279 311 15 30 chr5 38937818 38937950 -164147582 - L3 LINE CR1 -673 904 775 214 255 0 0 chr5 38938183 38938230 -164147302 + (CA)n Simple_repeat Simple_repeat 1 47 0 453 127 0 0 chr5 38938245 38938316 -164147216 - MER41E LTR ERV1 -120 392 322 1373 212 21 65 chr5 38938513 38938895 -164146637 - MLT1A1 LTR MaLR 0 365 1 1768 183 3 13 chr5 38938948 38939260 -164146272 - AluJb SINE Alu -2 310 2 1965 184 91 16 chr5 38940293 38940722 -164144810 - MLT1C LTR MaLR 0 467 7 2182 127 0 13 chr5 38940833 38941149 -164144383 + AluSx SINE Alu 1 312 0 641 292 64 0 chr5 38941168 38941404 -164144128 + MIR SINE MIR 2 252 -10 2051 171 28 15 chr5 38941752 38942143 -164143389 + MSTD LTR MaLR 1 396 0 286 294 103 27 chr5 38942156 38942302 -164143230 - MIR SINE MIR -65 197 41 2397 92 16 0 chr5 38942491 38942796 -164142736 + AluSx SINE Alu 1 310 -2 1852 164 11 0 chr5 38943086 38943373 -164142159 + AluSx SINE Alu 1 290 -22 247 278 63 48 chr5 38943540 38943666 -164141866 + MIR SINE MIR 100 227 -35 1992 206 25 21 chr5 38944555 38945032 -164140500 + Charlie4a DNA MER1_type 27 505 -3 1620 182 0 21 chr5 38945219 38945505 -164140027 + AluSq SINE Alu 16 295 -18 514 259 24 29 chr5 38946006 38946176 -164139356 + MER45A DNA AcHobo 10 178 0 1204 212 94 26 chr5 38946273 38946671 -164138861 + MLT2B1 LTR ERVL 2 457 -63 2162 112 3 3 chr5 38946683 38946978 -164138554 - AluSx SINE Alu -11 301 7 1573 231 138 18 chr5 38947157 38947608 -164137924 - MLT1D LTR MaLR 0 505 1 227 273 36 0 chr5 38947800 38947855 -164137677 + G-rich Low_complexity Low_complexity 6 62 0 1512 188 0 31 chr5 38948575 38948862 -164136670 - AluJb SINE Alu -20 292 15 2324 101 3 0 chr5 38948886 38949182 -164136350 - AluSx SINE Alu -15 297 1 484 274 132 38 chr5 38949638 38949978 -164135554 + L2 LINE L2 2468 2839 -475 360 264 20 74 chr5 38950047 38950195 -164135337 - MIR SINE MIR -23 239 100 336 238 42 35 chr5 38950382 38950525 -164135007 + L1ME4a LINE L1 5960 6103 -18 576 284 108 22 chr5 38950525 38950793 -164134739 + L2 LINE L2 3023 3313 0 874 167 0 14 chr5 38951538 38951682 -164133850 + AluJb SINE Alu 150 291 -21 419 287 56 7 chr5 38952248 38952391 -164133141 + MIR SINE MIR 3 152 -110 622 315 121 30 chr5 38952396 38952652 -164132880 + LTR33 LTR ERVL 89 395 -126 2072 152 118 0 chr5 38952652 38953033 -164132499 - MSTC LTR MaLR -2 426 1 622 315 121 30 chr5 38953033 38953173 -164132359 + LTR33 LTR ERVL 395 521 0 744 208 45 0 chr5 38953367 38953521 -164132011 + LTR33A LTR ERVL 363 523 0 243 276 0 13 chr5 38953522 38953598 -164131934 + MIR SINE MIR 110 184 -78 2258 106 0 23 chr5 38953729 38954030 -164131502 + AluSx SINE Alu 5 298 -14 865 199 4 3 chr5 38955286 38955522 -164130010 + AluJb SINE Alu 1 305 -7 1411 165 95 22 chr5 38956937 38957098 -164128434 - AluJo SINE Alu -13 299 108 243 0 0 0 chr5 38957098 38957125 -164128407 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1411 165 95 22 chr5 38957125 38957236 -164128296 - AluJo SINE Alu -204 108 7 469 268 155 10 chr5 38957560 38957754 -164127778 + MIR SINE MIR 28 249 -13 289 178 69 59 chr5 38958266 38958367 -164127165 - MIR SINE MIR -21 241 140 1110 316 131 9 chr5 38958371 38958823 -164126709 + LTR33 LTR ERVL 15 521 0 316 205 197 60 chr5 38958823 38958940 -164126592 - MIR SINE MIR -109 153 21 1797 162 3 29 chr5 38959298 38959607 -164125925 - AluJo SINE Alu -7 305 5 233 333 15 0 chr5 38960093 38960159 -164125373 + MIR SINE MIR 8 74 -188 1071 284 62 5 chr5 38960160 38960547 -164124985 - LTR16C LTR ERVL -2 489 81 636 315 60 4 chr5 38961203 38961454 -164124078 - ERVL LTR ERVL -858 4906 4642 1554 216 14 3 chr5 38961867 38962163 -164123369 + AluJo SINE Alu 1 299 -13 237 365 58 0 chr5 38962177 38962281 -164123251 + MIR SINE MIR 34 143 -65 2791 156 61 20 chr5 38962465 38962778 -164122754 - MLT2B2 LTR ERVL 0 515 173 2293 151 92 0 chr5 38962778 38963170 -164122362 + MSTC LTR MaLR 1 428 0 2791 156 61 20 chr5 38963170 38963351 -164122181 - MLT2B2 LTR ERVL -342 173 1 256 310 123 39 chr5 38964039 38964194 -164121338 + MIR3 SINE MIR 28 195 -13 604 294 83 24 chr5 38964222 38964511 -164121021 + L2 LINE L2 3005 3310 -3 2300 84 7 0 chr5 38964547 38964831 -164120701 + AluSg SINE Alu 1 286 -24 2190 136 0 3 chr5 38965083 38965392 -164120140 + AluSx SINE Alu 1 308 -4 504 279 0 0 chr5 38965520 38965656 -164119876 + MIR SINE MIR 18 153 -109 843 284 111 31 chr5 38965687 38966110 -164119422 + LTR33 LTR ERVL 47 503 -18 272 279 0 0 chr5 38966147 38966226 -164119306 + MIR SINE MIR 183 261 -1 562 246 8 15 chr5 38966554 38966684 -164118848 + MER45A DNA AcHobo 47 175 -3 264 30 0 0 chr5 38967675 38967708 -164117824 + (CA)n Simple_repeat Simple_repeat 1 33 0 23 0 0 0 chr5 38968555 38968578 -164116954 + AT_rich Low_complexity Low_complexity 1 23 0 2298 99 0 0 chr5 38969051 38969333 -164116199 - AluSc SINE Alu -27 282 1 2002 135 3 13 chr5 38969707 38970011 -164115521 + AluSx SINE Alu 1 301 -11 829 204 0 0 chr5 38970295 38970442 -164115090 + FAM SINE Alu 12 158 -27 1538 98 22 40 chr5 38970444 38970668 -164114864 + MER30 DNA MER1_type 11 230 0 898 153 0 0 chr5 38970695 38970826 -164114706 + FLAM_C SINE Alu 6 136 -7 1971 150 3 19 chr5 38971517 38971831 -164113701 + AluSq SINE Alu 1 309 -4 22 56 0 0 chr5 38971959 38971995 -164113537 + AT_rich Low_complexity Low_complexity 1 36 0 1131 241 74 83 chr5 38972597 38972688 -164112844 - MLT1L LTR MaLR -31 584 494 1869 183 29 18 chr5 38972688 38973071 -164112461 - MLT1B LTR MaLR -3 387 1 1131 241 74 83 chr5 38973071 38973532 -164112000 - MLT1L LTR MaLR -121 494 37 2153 130 17 0 chr5 38974211 38974512 -164111020 - AluJb SINE Alu -6 306 1 191 214 143 14 chr5 38974950 38975020 -164110512 + L3 LINE CR1 1148 1226 -351 688 80 0 0 chr5 38975274 38975362 -164110170 + AluSg/x SINE Alu 213 300 -10 2611 64 0 3 chr5 38975398 38975710 -164109822 - AluY SINE Alu 0 311 1 180 344 0 0 chr5 38975823 38975884 -164109648 - L3 LINE CR1 -34 1543 1483 2028 161 18 21 chr5 38975935 38976271 -164109261 - MER2 DNA MER2_type -10 335 1 419 368 35 56 chr5 38976299 38976674 -164108858 - L2 LINE L2 0 3272 2906 1641 186 13 10 chr5 38976684 38976985 -164108547 - AluJb SINE Alu -7 305 4 1893 149 30 10 chr5 38978297 38978599 -164106933 + AluJb SINE Alu 1 308 -4 2223 148 77 17 chr5 38978772 38979176 -164106356 + MSTA LTR MaLR 1 428 0 351 60 0 0 chr5 38980601 38980651 -164104881 + (A)n Simple_repeat Simple_repeat 1 50 0 496 311 91 20 chr5 38981010 38981351 -164104181 + L1ME4a LINE L1 5524 5888 -233 4040 107 140 56 chr5 38981415 38981697 -164103835 + Tigger3(Golem) DNA MER2_type 2 259 -2770 2520 63 0 3 chr5 38981697 38982000 -164103532 - AluY SINE Alu -9 302 1 4040 107 140 56 chr5 38982000 38982039 -164103493 + Tigger3(Golem) DNA MER2_type 259 293 -2736 2148 124 7 0 chr5 38982039 38982337 -164103195 - AluSq SINE Alu -13 300 1 4040 107 140 56 chr5 38982337 38982706 -164102826 + Tigger3(Golem) DNA MER2_type 293 630 -2399 2192 118 10 0 chr5 38982706 38983012 -164102520 - AluSx SINE Alu -3 309 1 4040 107 140 56 chr5 38983012 38983106 -164102426 + Tigger3(Golem) DNA MER2_type 630 715 -2314 281 89 22 0 chr5 38983106 38983151 -164102381 + (CTCA)n Simple_repeat Simple_repeat 1 46 0 4040 107 140 56 chr5 38983151 38983234 -164102298 + Tigger3(Golem) DNA MER2_type 715 790 -2239 1800 184 0 13 chr5 38983234 38983550 -164101982 - AluJo SINE Alu 0 312 1 4040 107 140 56 chr5 38983550 38983822 -164101710 + Tigger3(Golem) DNA MER2_type 790 3028 -1 298 273 0 0 chr5 38983853 38983919 -164101613 + L1ME4a LINE L1 5987 6052 -69 789 214 23 6 chr5 38984384 38984557 -164100975 - MER45A DNA AcHobo -2 176 1 261 139 0 0 chr5 38984773 38984816 -164100716 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 261 0 0 0 chr5 38985033 38985062 -164100470 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1245 158 206 0 chr5 38985065 38985293 -164100239 - AluJo SINE Alu -35 277 3 464 110 12 0 chr5 38985332 38985414 -164100118 + L1MA4A LINE L1 6220 6302 -1 272 336 82 0 chr5 38985577 38985687 -164099845 + MIR SINE MIR 82 200 -62 2079 127 10 0 chr5 38986373 38986664 -164098868 + AluSx SINE Alu 1 294 -18 562 81 0 0 chr5 38986672 38986746 -164098786 + Alu SINE Alu 2 75 -236 270 0 0 0 chr5 38986997 38987027 -164098505 + (TG)n Simple_repeat Simple_repeat 2 31 0 421 281 97 71 chr5 38987696 38987784 -164097748 - L2 LINE L2 -1 3312 3228 2024 125 28 0 chr5 38987784 38988073 -164097459 + AluSx SINE Alu 3 299 -13 2205 107 7 0 chr5 38988075 38988365 -164097167 + AluSg SINE Alu 1 292 -18 421 281 97 71 chr5 38988365 38988964 -164096568 - L2 LINE L2 -85 3228 2601 829 169 0 0 chr5 38989589 38989719 -164095813 - FLAM_C SINE Alu -3 130 1 2102 137 0 0 chr5 38989723 38990046 -164095486 - AluSx SINE Alu 0 323 1 352 338 33 26 chr5 38990112 38990263 -164095269 + MIR SINE MIR 1 152 -110 845 163 7 13 chr5 38991867 38992020 -164093512 + MLT1A2 LTR MaLR 1 152 -213 1745 146 14 41 chr5 38992024 38992159 -164093373 + AluJb SINE Alu 1 138 -174 2338 107 0 0 chr5 38992159 38992458 -164093074 + AluSc SINE Alu 1 299 -10 1745 146 14 41 chr5 38992458 38992617 -164092915 + AluJb SINE Alu 138 287 -25 36 19 0 19 chr5 38992640 38992678 -164092854 + AT_rich Low_complexity Low_complexity 1 39 -14 2394 91 3 0 chr5 38992678 38992986 -164092546 - AluSc SINE Alu 0 309 1 36 19 0 19 chr5 38992986 38993001 -164092531 + AT_rich Low_complexity Low_complexity 39 53 0 962 228 5 24 chr5 38993001 38993212 -164092320 + MLT1A2 LTR MaLR 157 363 -11 259 235 0 29 chr5 38993407 38993475 -164092057 - L2 LINE L2 -2 3270 3205 2183 232 114 21 chr5 38993684 38994343 -164091189 + HsTC2c DNA Tc2 1 720 -9 667 224 94 50 chr5 38994403 38994604 -164090928 - MER63A DNA MER1_type 0 210 1 4144 126 14 22 chr5 38994834 38995502 -164090030 + Tigger3b DNA MER2_type 1 662 -569 340 39 77 0 chr5 38995542 38995594 -164089938 + Tigger3b DNA MER2_type 650 705 -527 2143 102 6 35 chr5 38995613 38995928 -164089604 - AluSx SINE Alu -6 306 1 183 320 67 62 chr5 38995957 38996135 -164089397 - L2 LINE L2 -371 2943 2765 319 220 0 90 chr5 38996312 38996412 -164089120 + MIR SINE MIR 92 182 -80 267 256 13 0 chr5 38996480 38996558 -164088974 + MIR3 SINE MIR 129 207 -1 560 293 5 25 chr5 38997140 38997338 -164088194 - MIR SINE MIR -20 242 49 22 35 0 0 chr5 38998257 38998286 -164087246 + AT_rich Low_complexity Low_complexity 1 29 0 1456 206 33 7 chr5 38998286 38998562 -164086970 - AluJo SINE Alu -23 289 7 304 248 183 0 chr5 38999065 38999202 -164086330 + L2 LINE L2 3011 3172 -141 1692 175 32 66 chr5 38999249 38999297 -164086235 + MLT1A1 LTR MaLR 1 49 -316 2257 130 31 0 chr5 38999297 38999650 -164085882 + THE1B LTR MaLR 1 364 0 1692 175 32 66 chr5 38999650 38999979 -164085553 + MLT1A1 LTR MaLR 49 365 0 240 281 22 0 chr5 38999982 39000071 -164085461 + L2 LINE L2 3182 3272 0 788 219 24 6 chr5 39000200 39000369 -164085163 + MER58B DNA MER1_type 167 338 -3 2227 129 0 0 chr5 39000517 39000819 -164084713 - AluSx SINE Alu -9 303 2 26 50 0 0 chr5 39000826 39000866 -164084666 + AT_rich Low_complexity Low_complexity 1 40 0 962 278 53 32 chr5 39000900 39001238 -164084294 - MLT1I LTR MaLR -2 407 63 2027 167 10 52 chr5 39002225 39002632 -164082900 - MLT1B LTR MaLR 0 390 1 1791 157 33 0 chr5 39002664 39002966 -164082566 + AluJb SINE Alu 1 311 0 288 0 0 0 chr5 39003071 39003103 -164082429 + (TG)n Simple_repeat Simple_repeat 1 32 0 2377 103 3 0 chr5 39003136 39003448 -164082084 + AluSp SINE Alu 1 313 0 362 315 56 20 chr5 39003711 39004054 -164081478 - L1MEc LINE L1 -4738 1572 1189 2885 49 11 0 chr5 39004054 39004403 -164081129 - L1PA7 LINE L1 -8 6146 5794 362 315 56 20 chr5 39004403 39004603 -164080929 - L1MEc LINE L1 -5121 1189 998 1162 210 102 42 chr5 39004603 39004936 -164080596 - MSTD LTR MaLR 0 396 44 239 162 0 149 chr5 39004976 39005124 -164080408 - AluSp/q SINE Alu -13 290 165 882 267 43 89 chr5 39005263 39005635 -164079897 - L1MEc LINE L1 -5187 932 597 1706 154 0 39 chr5 39005635 39005920 -164079612 - AluJb SINE Alu -21 291 18 882 267 43 89 chr5 39005920 39006154 -164079378 - L1MEc LINE L1 -5522 597 354 266 351 14 7 chr5 39006269 39006417 -164079115 - L1MEc LINE L1 -5966 153 5 2016 155 62 6 chr5 39006583 39006746 -164078786 - THE1C LTR MaLR 0 375 223 231 36 0 0 chr5 39006746 39006774 -164078758 + (GA)n Simple_repeat Simple_repeat 1 28 0 2016 155 62 6 chr5 39006774 39006965 -164078567 - THE1C LTR MaLR -152 223 1 1687 142 0 31 chr5 39007014 39007303 -164078229 + AluSq SINE Alu 6 285 -28 324 0 0 0 chr5 39007303 39007339 -164078193 + (CA)n Simple_repeat Simple_repeat 2 37 0 480 245 192 37 chr5 39008747 39009102 -164076430 + MLT1G1 LTR MaLR 24 472 -123 191 129 0 0 chr5 39009321 39009352 -164076180 + MER5B DNA MER1_type 3 33 -145 39263 83 8 8 chr5 39009447 39015594 -164069938 - L1PA6 LINE L1 0 6154 11 2204 119 0 0 chr5 39015690 39015984 -164069548 + AluSx SINE Alu 1 294 -18 788 246 20 10 chr5 39016335 39016534 -164068998 - MIR SINE MIR -13 249 49 768 185 83 74 chr5 39016621 39016837 -164068695 + AluJo SINE Alu 1 218 -94 246 174 0 0 chr5 39016840 39016886 -164068646 + AluJb SINE Alu 86 131 -2 23 68 0 0 chr5 39016901 39016945 -164068587 + AT_rich Low_complexity Low_complexity 1 44 0 2246 109 7 0 chr5 39018096 39018390 -164067142 + AluSx SINE Alu 1 296 -16 1836 183 20 0 chr5 39018491 39018797 -164066735 + AluJb SINE Alu 1 312 0 992 141 58 0 chr5 39018939 39019095 -164066437 + AluJb SINE Alu 136 300 -12 2186 123 0 16 chr5 39019095 39019403 -164066129 + AluSg SINE Alu 1 303 -7 435 222 40 24 chr5 39019810 39019936 -164065596 + MER5B DNA MER1_type 51 178 0 370 290 90 0 chr5 39020388 39020533 -164064999 + MIR SINE MIR 30 187 -75 810 265 39 35 chr5 39020585 39020774 -164064758 + MIR SINE MIR 3 195 -67 431 264 0 69 chr5 39020774 39020918 -164064614 - MER94 DNA DNA 0 134 1 810 265 39 35 chr5 39020918 39020985 -164064547 + MIR SINE MIR 195 260 -2 1155 194 94 10 chr5 39021001 39021300 -164064232 - MER33 DNA MER1_type 0 324 1 1556 125 7 88 chr5 39022288 39022583 -164062949 + AluJb SINE Alu 4 274 -38 437 125 0 25 chr5 39022612 39022692 -164062840 + (GGAA)n Simple_repeat Simple_repeat 4 81 0 254 284 71 41 chr5 39022705 39022874 -164062658 - MIR3 SINE MIR -32 176 2 25 0 0 0 chr5 39025022 39025047 -164060485 + GC_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr5 39025549 39025588 -164059944 + GC_rich Low_complexity Low_complexity 1 39 0 212 191 0 24 chr5 39027224 39027266 -164058266 + CT-rich Low_complexity Low_complexity 3 43 0 2218 84 3 25 chr5 39027291 39027601 -164057931 + AluSc SINE Alu 1 304 0 1609 183 47 0 chr5 39028055 39028334 -164057198 - AluJb SINE Alu -20 292 1 198 103 0 0 chr5 39028374 39028403 -164057129 + (TTTTTA)n Simple_repeat Simple_repeat 4 32 0 1891 136 8 0 chr5 39028692 39028956 -164056576 + AluJb SINE Alu 18 283 -29 2154 82 4 14 chr5 39028958 39029239 -164056293 + AluSp SINE Alu 29 306 -7 280 307 47 8 chr5 39029314 39029441 -164056091 + MIR3 SINE MIR 66 197 -11 227 132 38 57 chr5 39029585 39029638 -164055894 - U13 snRNA snRNA -52 52 1 667 262 226 21 chr5 39029638 39029831 -164055701 + L2 LINE L2 2909 3061 -252 1071 179 57 35 chr5 39029831 39030060 -164055472 - MER46A DNA MER2_type -1 235 2 667 262 226 21 chr5 39030060 39030202 -164055330 + L2 LINE L2 3061 3313 0 1241 190 0 14 chr5 39030647 39030868 -164054664 - AluJo SINE Alu -94 218 1 2255 111 0 22 chr5 39031501 39031817 -164053715 - AluSx SINE Alu -1 311 3 1843 175 3 7 chr5 39032017 39032326 -164053206 + AluJb SINE Alu 1 308 -4 692 161 22 36 chr5 39033009 39033146 -164052386 + AluJb SINE Alu 2 136 -176 583 101 22 0 chr5 39033154 39033243 -164052289 + AluY SINE Alu 219 309 -2 21 0 0 0 chr5 39033407 39033428 -164052104 + AT_rich Low_complexity Low_complexity 1 21 0 2840 116 9 5 chr5 39033428 39033784 -164051748 - L1PB1 LINE L1 -1 6150 5786 1011 148 0 0 chr5 39033784 39033997 -164051535 + (TA)n Simple_repeat Simple_repeat 1 213 0 2840 116 9 5 chr5 39033997 39034066 -164051466 - L1PB1 LINE L1 -365 5786 5719 204 40 0 0 chr5 39034281 39034306 -164051226 + (T)n Simple_repeat Simple_repeat 1 25 0 216 313 102 8 chr5 39035807 39035935 -164049597 - MIR SINE MIR -122 140 1 1830 166 7 3 chr5 39036037 39036333 -164049199 - AluJb SINE Alu -15 297 1 24 0 0 0 chr5 39036339 39036363 -164049169 + AT_rich Low_complexity Low_complexity 1 24 0 2188 107 0 3 chr5 39036915 39037204 -164048328 + AluSx SINE Alu 11 298 -14 2307 105 0 0 chr5 39037655 39037950 -164047582 - AluSc SINE Alu -14 295 1 325 316 63 19 chr5 39039080 39039238 -164046294 + MIR SINE MIR 28 192 -70 34 0 0 0 chr5 39039247 39039281 -164046251 + AT_rich Low_complexity Low_complexity 1 34 0 1015 156 113 59 chr5 39040357 39040667 -164044865 - MER33 DNA MER1_type -5 319 1 319 169 46 0 chr5 39042327 39042392 -164043140 + MLT1K LTR MaLR 520 587 -1 2144 125 0 13 chr5 39043377 39043682 -164041850 - AluSx SINE Alu -9 303 3 2254 100 0 7 chr5 39043693 39043992 -164041540 - AluSc SINE Alu -12 297 1 2286 227 61 30 chr5 39044000 39044266 -164041266 - L1MB7 LINE L1 0 6184 5928 2089 126 7 7 chr5 39044266 39044568 -164040964 + AluJo SINE Alu 1 302 -10 2286 227 61 30 chr5 39044568 39044943 -164040589 - L1MB7 LINE L1 -256 5928 5523 1931 139 41 0 chr5 39045951 39046246 -164039286 - AluSg SINE Alu -3 307 1 1868 132 38 11 chr5 39046247 39046534 -164038998 - AluJo SINE Alu -17 295 1 447 70 70 0 chr5 39046629 39046700 -164038832 + MADE1 DNA Mariner 5 80 0 999 154 0 0 chr5 39046886 39047059 -164038473 - AluSg/x SINE Alu 0 306 134 2030 156 93 3 chr5 39047156 39047509 -164038023 + MLT1B LTR MaLR 1 385 -5 197 33 33 0 chr5 39048114 39048144 -164037388 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1556 232 79 3 chr5 39049015 39049382 -164036150 - MSTD LTR MaLR 0 396 2 188 307 57 11 chr5 39049475 39049563 -164035969 + L2 LINE L2 2962 3053 -219 1310 153 14 32 chr5 39050301 39050517 -164035015 - AluJo SINE Alu -22 290 79 418 254 133 32 chr5 39051033 39051300 -164034232 + MLT1G1 LTR MaLR 24 344 -230 6565 70 15 0 chr5 39051790 39052645 -164032887 - L1PA6 LINE L1 0 6154 5287 7834 122 6 3 chr5 39052765 39053902 -164031630 - HERVK9 LTR ERVK -282 5634 4494 237 322 11 0 chr5 39054097 39054184 -164031348 + L3 LINE CR1 928 1015 -562 2500 90 3 0 chr5 39054638 39054950 -164030582 - AluSp SINE Alu 0 313 1 1668 199 0 3 chr5 39054950 39055257 -164030275 - AluSx SINE Alu -6 306 1 659 241 35 35 chr5 39055514 39055796 -164029736 + MER33 DNA MER1_type 1 282 -42 777 199 32 48 chr5 39056272 39056458 -164029074 - AluJo SINE Alu -126 186 4 2370 100 3 0 chr5 39056506 39056817 -164028715 - AluSp SINE Alu -1 312 1 843 154 6 13 chr5 39056884 39057040 -164028492 - L1MB8 LINE L1 -6 6172 6018 2092 49 0 39 chr5 39058395 39058701 -164026831 - AluY SINE Alu -17 294 1 337 287 178 0 chr5 39058921 39059078 -164026454 - MER5A DNA MER1_type -4 185 1 733 173 0 8 chr5 39059779 39059912 -164025620 + FLAM_C SINE Alu 2 133 0 1470 124 151 4 chr5 39059991 39060256 -164025276 + L1PB2 LINE L1 5848 6151 0 315 309 24 8 chr5 39060294 39060417 -164025115 + MIR3 SINE MIR 38 162 -46 1876 118 39 69 chr5 39060933 39061322 -164024210 + L1MA8 LINE L1 5913 6289 -2 25 0 0 0 chr5 39061834 39061859 -164023673 + AT_rich Low_complexity Low_complexity 1 25 0 559 321 25 13 chr5 39063509 39063746 -164021786 - MIR SINE MIR 0 262 23 1877 153 0 7 chr5 39063802 39064097 -164021435 + AluJb SINE Alu 6 298 -14 341 309 51 39 chr5 39064142 39064267 -164021265 + MIR SINE MIR 77 206 -56 2116 111 3 3 chr5 39064267 39064587 -164020945 + AluSp SINE Alu 1 313 0 341 309 51 39 chr5 39064587 39064639 -164020893 + MIR SINE MIR 206 256 -6 2322 103 0 7 chr5 39066661 39066962 -164018570 + AluSx SINE Alu 5 303 -9 862 82 0 0 chr5 39067123 39067233 -164018299 + AluY SINE Alu 195 304 -7 21 57 0 0 chr5 39067288 39067323 -164018209 + AT_rich Low_complexity Low_complexity 1 35 0 2458 151 42 24 chr5 39067468 39067926 -164017606 - MLT1C LTR MaLR -1 466 1 548 305 5 11 chr5 39068159 39068346 -164017186 - MIR SINE MIR -12 250 65 2004 135 0 4 chr5 39069595 39069876 -164015656 - AluSx SINE Alu -32 280 1 302 291 71 44 chr5 39069944 39070126 -164015406 - MLT1J LTR MaLR 0 511 325 1357 155 39 11 chr5 39070131 39070415 -164015117 + MER33 DNA MER1_type 1 292 -32 1724 174 0 44 chr5 39070475 39070792 -164014740 - AluJo SINE Alu -5 307 5 2409 81 7 0 chr5 39070805 39071112 -164014420 - AluY SINE Alu -2 309 1 233 258 108 0 chr5 39071141 39071234 -164014298 - MLT1J LTR MaLR -316 195 93 2280 121 0 0 chr5 39071525 39071831 -164013701 + AluSx SINE Alu 1 306 -6 2531 87 3 0 chr5 39071831 39072143 -164013389 + AluSp SINE Alu 1 313 0 237 322 11 0 chr5 39072596 39072683 -164012849 - L3 LINE CR1 -562 1015 928 439 191 0 17 chr5 39072794 39072909 -164012623 + C-rich Low_complexity Low_complexity 3 115 0 203 329 0 14 chr5 39072909 39072979 -164012553 + MIR SINE MIR 118 186 -76 212 269 45 0 chr5 39073034 39073101 -164012431 + L2 LINE L2 3203 3272 0 239 296 93 19 chr5 39073852 39073960 -164011572 - MIR SINE MIR -34 228 113 1898 172 61 4 chr5 39073968 39074365 -164011167 - MLT1C LTR MaLR 0 467 2 4562 129 63 14 chr5 39075732 39076490 -164009042 + MER4E LTR ERV1 1 768 -11 2128 117 0 7 chr5 39076493 39076792 -164008740 - AluSq SINE Alu -16 297 1 1184 158 20 5 chr5 39076962 39077158 -164008374 + AluSg/x SINE Alu 85 283 -29 2263 105 7 0 chr5 39077390 39077684 -164007848 - AluSp SINE Alu -17 296 1 305 258 139 41 chr5 39077696 39077940 -164007592 + L1ME4a LINE L1 5688 5955 -166 393 174 174 110 chr5 39078248 39078442 -164007090 - MER69 DNA AcHobo 0 2526 1 810 177 16 43 chr5 39078619 39078805 -164006727 + MER5A DNA MER1_type 1 181 -8 264 269 10 19 chr5 39079183 39079287 -164006245 + MIR SINE MIR 104 206 -56 609 206 7 39 chr5 39079519 39079639 -164005893 + MER3 DNA MER1_type 19 134 -28 746 167 8 8 chr5 39079639 39079771 -164005761 - FLAM_A SINE Alu -1 132 1 609 206 7 39 chr5 39079771 39079805 -164005727 + MER3 DNA MER1_type 134 168 -41 1495 186 71 8 chr5 39079809 39080175 -164005357 + MER3 DNA MER1_type 2235 2623 0 2414 101 3 0 chr5 39080317 39080625 -164004907 - AluSp SINE Alu -4 309 1 250 280 106 8 chr5 39081773 39081863 -164003669 + MIR3 SINE MIR 56 164 -44 2268 90 3 3 chr5 39081863 39082153 -164003379 + AluSx SINE Alu 1 290 -22 250 280 106 8 chr5 39082153 39082194 -164003338 + MIR3 SINE MIR 164 200 -8 2447 70 3 0 chr5 39082879 39083179 -164002353 - AluSp SINE Alu -12 301 1 1575 189 50 0 chr5 39083549 39083829 -164001703 + AluJo SINE Alu 11 304 -8 2046 108 4 7 chr5 39083863 39084142 -164001390 + AluSx SINE Alu 21 298 -14 294 287 40 46 chr5 39084293 39084467 -164001065 - MER5B DNA MER1_type -5 173 1 941 186 91 57 chr5 39084775 39085071 -164000461 - MLT1C LTR MaLR 0 467 162 371 264 32 16 chr5 39085256 39085381 -164000151 - MER5A DNA MER1_type -1 188 62 304 267 93 47 chr5 39085528 39085693 -163999839 + MLT1J LTR MaLR 7 179 -332 2086 146 22 32 chr5 39085693 39085805 -163999727 + MLT1A1 LTR MaLR 1 113 -252 1373 134 102 130 chr5 39085805 39086266 -163999266 - LTR7 LTR ERV1 -2 448 1 2086 146 22 32 chr5 39086266 39086522 -163999010 + MLT1A1 LTR MaLR 113 365 0 365 330 74 26 chr5 39086597 39086867 -163998665 + MLT1J LTR MaLR 229 511 0 427 206 152 0 chr5 39087417 39087509 -163998023 + MER103 DNA DNA 12 117 -49 25 0 0 0 chr5 39087546 39087571 -163997961 + AT_rich Low_complexity Low_complexity 1 25 0 230 162 0 0 chr5 39087807 39087844 -163997688 - L1PB3 LINE L1 -107 6047 6011 285 139 0 0 chr5 39088076 39088119 -163997413 - FRAM/FAM SINE Alu -94 72 30 624 234 0 8 chr5 39088254 39088378 -163997154 - FLAM_C SINE Alu -20 123 1 2374 86 7 0 chr5 39088478 39088779 -163996753 - AluSg SINE Alu -7 303 1 2911 153 24 16 chr5 39089621 39090129 -163995403 - MER41E LTR ERV1 0 512 1 256 247 171 73 chr5 39090252 39090527 -163995005 + L2 LINE L2 3012 3313 0 2185 126 0 7 chr5 39091090 39091391 -163994141 - AluSq SINE Alu -14 299 1 195 162 0 0 chr5 39091746 39091783 -163993749 + (TG)n Simple_repeat Simple_repeat 2 38 0 481 250 29 36 chr5 39093328 39093500 -163992032 + MIR SINE MIR 21 188 -62 1328 273 128 11 chr5 39093673 39094205 -163991327 - MLT1G1 LTR MaLR 0 595 2 27 0 0 0 chr5 39094669 39094696 -163990836 + AT_rich Low_complexity Low_complexity 1 27 0 2732 42 0 0 chr5 39095080 39095387 -163990145 - AluY SINE Alu -3 308 2 676 164 16 8 chr5 39095527 39095655 -163989877 - FLAM_A SINE Alu 0 142 14 203 272 22 33 chr5 39095751 39095843 -163989689 + CT-rich Low_complexity Low_complexity 6 96 0 321 242 0 33 chr5 39095948 39096039 -163989493 + L1MC4 LINE L1 6615 6702 -1340 234 228 18 0 chr5 39096041 39096098 -163989434 + (TA)n Simple_repeat Simple_repeat 2 59 0 2039 123 7 10 chr5 39096397 39096690 -163988842 - AluSx SINE Alu -20 292 1 1270 156 72 99 chr5 39096806 39097165 -163988367 + MLT1B LTR MaLR 1 465 -2 1852 115 0 0 chr5 39097245 39097489 -163988043 + AluSx SINE Alu 2 245 -67 1871 102 3 98 chr5 39097494 39097799 -163987733 + AluSq SINE Alu 27 302 -11 282 141 0 0 chr5 39097845 39097899 -163987633 - MLT2B1 LTR ERVL -1 512 354 1845 191 52 10 chr5 39097932 39098303 -163987229 - MLT2D LTR ERVL -41 479 1 2263 107 3 3 chr5 39098696 39098996 -163986536 - AluSx SINE Alu -12 300 1 2175 115 14 0 chr5 39100364 39100659 -163984873 + AluSq SINE Alu 1 299 -14 685 142 0 35 chr5 39100775 39100888 -163984644 + AluJo SINE Alu 2 110 -202 2028 143 143 11 chr5 39100891 39101269 -163984263 - MSTA LTR MaLR 0 428 1 2255 124 22 9 chr5 39101285 39101607 -163983925 + THE1B LTR MaLR 39 364 0 10145 100 87 4 chr5 39101607 39103065 -163982467 + THE1B-int LTR MaLR 1 1579 -1 2419 109 28 11 chr5 39103066 39103424 -163982108 + THE1B LTR MaLR 1 364 0 881 131 80 62 chr5 39103424 39103600 -163981932 + AluJo SINE Alu 108 286 -26 334 264 18 27 chr5 39103615 39103725 -163981807 + L1MC5 LINE L1 7711 7819 -142 1599 159 64 0 chr5 39103764 39104028 -163981504 + AluJb SINE Alu 1 281 -31 27 62 0 0 chr5 39104096 39104144 -163981388 + AT_rich Low_complexity Low_complexity 1 48 0 1562 241 52 47 chr5 39104184 39104803 -163980729 + L1MC5 LINE L1 7239 7860 -101 1901 160 3 13 chr5 39105071 39105378 -163980154 + AluSx SINE Alu 1 304 -8 2322 112 0 3 chr5 39105381 39105695 -163979837 + AluSq SINE Alu 1 313 0 2087 111 11 0 chr5 39107120 39107399 -163978133 - AluSx SINE Alu -11 301 20 266 134 37 12 chr5 39107427 39107509 -163978023 + (TA)n Simple_repeat Simple_repeat 2 85 0 196 270 230 0 chr5 39107885 39107985 -163977547 + L2 LINE L2 3191 3313 0 2275 98 10 0 chr5 39109339 39109635 -163975897 - AluSg SINE Alu -7 303 5 255 235 35 12 chr5 39110642 39110727 -163974805 - MIR SINE MIR -3 259 173 2213 82 7 7 chr5 39110803 39111095 -163974437 + AluSx SINE Alu 1 292 -20 894 140 0 22 chr5 39111251 39111387 -163974145 - FLAM_C SINE Alu 0 133 1 2156 175 0 3 chr5 39111549 39111880 -163973652 + MER1B DNA MER1_type 1 330 -9 1884 145 20 20 chr5 39112166 39112469 -163973063 + AluJo SINE Alu 6 308 -4 807 148 7 22 chr5 39112827 39112962 -163972570 + FLAM_C SINE Alu 1 133 0 874 228 75 47 chr5 39113818 39114072 -163971460 - MIR SINE MIR 0 262 2 321 248 41 74 chr5 39114371 39114464 -163971068 - L2 LINE L2 0 3272 3182 2153 90 35 10 chr5 39114464 39114754 -163970778 + AluSx SINE Alu 1 297 -15 321 248 41 74 chr5 39114754 39114781 -163970751 - L2 LINE L2 -90 3182 3156 478 212 157 2 chr5 39115951 39116093 -163969439 - MIR SINE MIR -58 150 1 202 264 19 0 chr5 39116645 39116698 -163968834 + L2 LINE L2 3210 3263 -9 219 261 43 29 chr5 39117096 39117165 -163968367 + MER5B DNA MER1_type 92 161 -17 2099 106 3 3 chr5 39117333 39117648 -163967884 - AluSg SINE Alu 0 315 1 1701 223 75 27 chr5 39117821 39118260 -163967272 - MLT1C LTR MaLR -1 466 7 503 236 115 0 chr5 39119266 39119414 -163966118 + MIR SINE MIR 2 166 -96 1678 212 80 30 chr5 39119422 39119860 -163965672 - MLT1C LTR MaLR -2 465 6 2517 70 0 0 chr5 39120790 39121091 -163964441 - AluY SINE Alu -10 301 1 2077 80 0 15 chr5 39121091 39121353 -163964179 - AluSx SINE Alu -16 296 39 2877 73 0 0 chr5 39121460 39121815 -163963717 + THE1A LTR MaLR 1 355 0 443 206 95 0 chr5 39121888 39122014 -163963518 + MIR SINE MIR 85 222 -40 27 0 0 0 chr5 39122384 39122411 -163963121 + AT_rich Low_complexity Low_complexity 1 27 0 286 246 31 54 chr5 39122485 39122615 -163962917 - L2 LINE L2 -23 3249 3123 790 114 8 30 chr5 39123382 39123513 -163962019 + FLAM_C SINE Alu 16 143 0 209 269 224 30 chr5 39124763 39124964 -163960568 - MIR SINE MIR -3 259 20 231 267 27 27 chr5 39125063 39125138 -163960394 + Charlie4 DNA MER1_type 1883 1957 -4 2367 86 7 0 chr5 39125536 39125838 -163959694 - AluSp SINE Alu -9 304 1 2042 77 70 18 chr5 39125842 39126128 -163959404 - AluSq SINE Alu -10 303 3 578 319 21 7 chr5 39126161 39126440 -163959092 - L1ME3A LINE L1 -208 5962 5680 305 290 65 26 chr5 39126613 39126768 -163958764 - MER5A DNA MER1_type 0 189 29 253 345 42 0 chr5 39126814 39126956 -163958576 + L3b LINE CR1 1117 1264 -319 423 0 0 0 chr5 39127383 39127391 -163958141 + (TG)n Simple_repeat Simple_repeat 1 55 0 423 0 0 0 chr5 39127391 39127438 -163958094 + (TG)n Simple_repeat Simple_repeat 2 48 0 1088 151 0 0 chr5 39127459 39127618 -163957914 - AluSg/x SINE Alu -16 294 136 272 266 115 0 chr5 39127621 39127734 -163957798 + MER112 DNA MER1_type 39 164 -96 2237 98 3 19 chr5 39128183 39128321 -163957211 + AluSq SINE Alu 1 140 -173 2335 107 0 0 chr5 39128321 39128619 -163956913 + AluSc SINE Alu 1 298 -11 2237 98 3 19 chr5 39128619 39128787 -163956745 + AluSq SINE Alu 140 302 -11 641 193 67 0 chr5 39129094 39129213 -163956319 - FLAM_A SINE Alu -5 128 2 465 120 53 0 chr5 39130132 39130207 -163955325 - MER3 DNA MER1_type -73 136 58 * 886 184 34 63 chr5 39130198 39130405 -163955127 - MER20 DNA MER1_type -18 201 1 311 219 37 12 chr5 39130405 39130471 -163955061 - MER3 DNA MER1_type -130 79 12 265 214 41 92 chr5 39130561 39130659 -163954873 - MIR SINE MIR -131 131 39 398 195 228 34 chr5 39132832 39132981 -163952551 + MIR SINE MIR 21 198 -64 406 123 0 0 chr5 39132984 39133041 -163952491 - LTR16C LTR ERVL -5 486 430 715 181 9 0 chr5 39133280 39133396 -163952136 - FLAM_A SINE Alu -16 117 1 1002 219 17 0 chr5 39133397 39133575 -163951957 + MER58A DNA MER1_type 42 222 -2 368 259 0 0 chr5 39133586 39133667 -163951865 - LTR16C LTR ERVL -219 272 192 2161 130 0 3 chr5 39133668 39133967 -163951565 + AluSx SINE Alu 1 298 -14 3645 113 43 0 chr5 39134017 39134523 -163951009 + MER1A DNA MER1_type 2 529 0 467 129 47 12 chr5 39134692 39134777 -163950755 - AluSc SINE Alu -8 301 214 2032 78 0 0 chr5 39134777 39135019 -163950513 - AluSc SINE Alu -50 259 18 283 222 7 68 chr5 39135026 39135129 -163950403 - MER5B DNA MER1_type -45 133 45 1743 174 17 26 chr5 39135414 39135764 -163949768 - L1MB5 LINE L1 -8 6166 5820 1284 170 146 0 chr5 39135893 39136044 -163949488 - AluJb SINE Alu -19 283 155 228 35 0 0 chr5 39136044 39136073 -163949459 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1284 170 146 0 chr5 39136073 39136168 -163949364 - AluJb SINE Alu -147 155 1 684 200 8 8 chr5 39136484 39136614 -163948918 - FLAM_A SINE Alu 0 133 4 426 69 0 0 chr5 39137610 39137668 -163947864 + (TG)n Simple_repeat Simple_repeat 2 59 0 1994 111 36 4 chr5 39138552 39138831 -163946701 - AluSq SINE Alu -24 289 2 529 205 96 24 chr5 39138937 39139103 -163946429 - MER5B DNA MER1_type 0 178 1 234 0 0 0 chr5 39139223 39139249 -163946283 + (TC)n Simple_repeat Simple_repeat 1 26 0 2530 107 6 8 chr5 39139525 39139881 -163945651 + THE1A LTR MaLR 1 355 0 11615 97 8 9 chr5 39139881 39141464 -163944068 + THE1A-int LTR MaLR 1 1580 0 2394 118 8 8 chr5 39141464 39141819 -163943713 + THE1A LTR MaLR 1 355 0 358 295 9 9 chr5 39141960 39142072 -163943460 - LTR33A LTR ERVL -402 121 10 228 122 0 0 chr5 39142259 39142300 -163943232 + (CCA)n Simple_repeat Simple_repeat 2 42 0 1966 125 3 19 chr5 39142559 39142871 -163942661 + THE1-int LTR MaLR 929 1235 -345 556 125 0 0 chr5 39142869 39142949 -163942583 - THE1-int LTR MaLR -572 1008 929 * 182 298 0 0 chr5 39143247 39143304 -163942228 - L2 LINE L2 -61 3252 3196 2165 126 0 0 chr5 39143393 39143686 -163941846 + AluSx SINE Alu 3 295 -17 217 314 141 13 chr5 39144263 39144419 -163941113 - MIR3 SINE MIR -5 203 28 1922 138 7 10 chr5 39144424 39144713 -163940819 - AluSx SINE Alu -24 288 1 395 283 139 0 chr5 39144739 39144905 -163940627 - MER5A DNA MER1_type 0 189 1 482 295 108 0 chr5 39145263 39145488 -163940044 - L2 LINE L2 -292 3021 2774 31 76 0 0 chr5 39145488 39145554 -163939978 + AT_rich Low_complexity Low_complexity 1 66 0 340 266 18 28 chr5 39145820 39145929 -163939603 + MIR3 SINE MIR 86 193 -15 1921 141 0 38 chr5 39146582 39146895 -163938637 - AluJb SINE Alu -9 303 3 639 238 38 61 chr5 39146933 39147023 -163938509 + MIR SINE MIR 8 99 -163 532 114 13 0 chr5 39147023 39147102 -163938430 + MADE1 DNA Mariner 1 80 0 639 238 38 61 chr5 39147102 39147272 -163938260 + MIR SINE MIR 99 262 0 2500 135 28 6 chr5 39147854 39148601 -163936931 + L1MA4A LINE L1 4900 5665 -638 5557 163 21 23 chr5 39148604 39148757 -163936775 + L1MA3 LINE L1 4126 4278 -1868 1867 137 3 56 chr5 39148757 39149079 -163936453 + AluSx SINE Alu 3 307 -5 5557 163 21 23 chr5 39149079 39150135 -163935397 + L1MA3 LINE L1 4278 5332 -814 741 138 9 0 chr5 39150143 39150252 -163935280 + FLAM_C SINE Alu 9 118 -25 5918 98 19 37 chr5 39150269 39151208 -163934324 + L1MA3 LINE L1 5321 6242 -63 1838 176 0 3 chr5 39151208 39151498 -163934034 + AluJb SINE Alu 1 289 -23 5918 98 19 37 chr5 39151498 39151561 -163933971 + L1MA3 LINE L1 6242 6305 0 1983 142 16 7 chr5 39151571 39151874 -163933658 + AluSx SINE Alu 1 306 -6 2723 132 50 73 chr5 39151874 39152182 -163933350 + L1MA4A LINE L1 5661 5974 -329 2323 111 3 0 chr5 39152182 39152488 -163933044 + AluSx SINE Alu 1 307 -5 2723 132 50 73 chr5 39152488 39152829 -163932703 + L1MA4A LINE L1 5974 6297 -6 380 232 211 25 chr5 39152896 39153048 -163932484 - MER5A DNA MER1_type -1 188 9 586 119 0 0 chr5 39153095 39153179 -163932353 + AluJ/FLAM SINE Alu 1 84 -228 553 133 163 0 chr5 39153321 39153419 -163932113 + FLAM_C SINE Alu 4 117 -16 14213 39 10 5 chr5 39153539 39156057 -163929475 + L1PA5 LINE L1 3623 6148 -6 979 177 16 0 chr5 39156265 39156457 -163929075 + L1M4 LINE L1 5484 5678 -500 3330 92 55 8 chr5 39156458 39156946 -163928586 - MER9 LTR ERVK 0 511 1 1875 93 15 0 chr5 39156971 39157246 -163928286 - HERVK9 LTR ERVK -16 7045 5635 10123 97 4 5 chr5 39157329 39158811 -163926721 - HERVK9 LTR ERVK -282 5634 4155 6288 86 3 0 chr5 39158813 39159686 -163925846 - HERVK9 LTR ERVK -2012 3904 3029 * 8684 77 7 0 chr5 39159671 39160859 -163924673 - HERVK9 LTR ERVK -3297 2619 1424 3764 92 10 23 chr5 39160857 39161432 -163924100 - HERVK9 LTR ERVK -5348 568 1 * 2967 123 69 6 chr5 39161432 39161913 -163923619 - MER9 LTR ERVK 0 511 1 2258 189 44 19 chr5 39161914 39162455 -163923077 + L1MB7 LINE L1 5614 6168 -16 1907 159 9 19 chr5 39162599 39162914 -163922618 - AluJb SINE Alu 0 312 1 847 157 18 97 chr5 39162914 39163131 -163922401 - MER20 DNA MER1_type -19 200 1 322 267 155 9 chr5 39163141 39163257 -163922275 + L2 LINE L2 3181 3313 0 2239 115 3 0 chr5 39163383 39163678 -163921854 + AluSx SINE Alu 1 296 -16 207 203 419 0 chr5 39164515 39164589 -163920943 - MIR SINE MIR -118 144 40 219 187 13 27 chr5 39165410 39165485 -163920047 + (TA)n Simple_repeat Simple_repeat 1 74 0 927 240 168 12 chr5 39166305 39166721 -163918811 - LTR33 LTR ERVL -4 517 37 183 283 50 0 chr5 39166833 39166893 -163918639 + L3b LINE CR1 1431 1493 -90 2436 65 7 3 chr5 39166918 39167228 -163918304 - AluY SINE Alu 0 311 1 404 186 67 129 chr5 39168132 39168325 -163917207 + L1ME3A LINE L1 5988 6168 -2 2273 114 0 16 chr5 39168835 39169142 -163916390 + AluSx SINE Alu 1 302 -10 497 313 26 36 chr5 39169285 39169480 -163916052 - MIR3 SINE MIR -6 202 10 205 288 0 45 chr5 39169493 39169559 -163915973 + MIR SINE MIR 32 94 -168 280 302 78 9 chr5 39170000 39170116 -163915416 + MIR SINE MIR 130 253 -9 308 333 77 19 chr5 39170369 39170525 -163915007 + MIR SINE MIR 23 187 -75 2058 136 3 10 chr5 39170808 39171109 -163914423 + AluSx SINE Alu 1 299 -13 315 49 0 0 chr5 39171515 39171556 -163913976 + (CA)n Simple_repeat Simple_repeat 2 42 0 377 294 17 8 chr5 39171556 39171675 -163913857 - MER5B DNA MER1_type -52 126 7 576 259 128 55 chr5 39171973 39172371 -163913161 - MARNA DNA Mariner -84 502 76 2289 92 0 10 chr5 39172728 39173034 -163912498 - AluSx SINE Alu -9 303 1 332 226 174 45 chr5 39173057 39173322 -163912210 - L1ME4a LINE L1 -21 6100 5802 339 44 0 0 chr5 39174177 39174222 -163911310 + (CA)n Simple_repeat Simple_repeat 2 46 0 2413 50 10 3 chr5 39174367 39174667 -163910865 - AluY SINE Alu -9 302 1 2197 84 21 0 chr5 39176142 39176428 -163909104 + AluSx SINE Alu 1 292 -20 1470 169 31 4 chr5 39176469 39176723 -163908809 + AluJo SINE Alu 1 261 -51 896 174 113 15 chr5 39176760 39176955 -163908577 + MER20 DNA MER1_type 1 214 -5 763 11 0 0 chr5 39176959 39177049 -163908483 + 5S rRNA rRNA 1 90 -31 424 297 35 88 chr5 39177246 39177529 -163908003 - L2 LINE L2 -13 3300 3033 1881 147 0 31 chr5 39177948 39178269 -163907263 + AluJb SINE Alu 3 314 0 23 33 0 0 chr5 39178353 39178383 -163907149 + AT_rich Low_complexity Low_complexity 1 30 0 2358 99 0 3 chr5 39180237 39180549 -163904983 + AluSx SINE Alu 1 311 -1 596 290 114 65 chr5 39180604 39181509 -163904023 - L2 LINE L2 -48 3224 2273 759 205 165 5 chr5 39181535 39181735 -163903797 + MIR SINE MIR 15 246 -16 240 311 117 49 chr5 39181816 39182288 -163903244 - L2 LINE L2 -1203 2111 1608 1750 166 94 0 chr5 39183423 39183730 -163901802 - MER1B DNA MER1_type -1 336 1 3394 95 36 16 chr5 39183815 39184319 -163901213 + MER75 DNA T2_type 1 514 0 265 147 103 0 chr5 39184426 39184494 -163901038 - Charlie7 DNA MER1_type -2478 134 60 2300 72 7 0 chr5 39187064 39187355 -163898177 + AluSp SINE Alu 1 293 -20 26 0 0 0 chr5 39189547 39189573 -163895959 + AT_rich Low_complexity Low_complexity 1 26 0 1961 102 0 42 chr5 39189644 39189780 -163895752 + AluSx SINE Alu 1 120 -192 2381 102 0 0 chr5 39189780 39190085 -163895447 + AluSc SINE Alu 1 305 -4 1961 102 0 42 chr5 39190085 39190232 -163895300 + AluSx SINE Alu 120 272 -40 1724 159 65 3 chr5 39190261 39190614 -163894918 + L1MA8 LINE L1 5917 6291 0 670 176 162 31 chr5 39190745 39190967 -163894565 + L1MD3 LINE L1 7745 7995 0 2222 94 13 23 chr5 39191668 39191976 -163893556 + AluY SINE Alu 1 305 -6 2011 232 61 23 chr5 39191979 39192645 -163892887 + L1ME1 LINE L1 5449 6299 -35 942 218 77 2 chr5 39193717 39194067 -163891465 + Charlie4a DNA MER1_type 34 473 -35 845 136 0 0 chr5 39194433 39194583 -163890949 - FLAM_C SINE Alu 0 150 1 1521 132 25 107 chr5 39194978 39195297 -163890235 + AluYb8 SINE Alu 1 293 -25 353 357 97 22 chr5 39195749 39196152 -163889380 - L2 LINE L2 -457 2857 2425 50 92 0 0 chr5 39196761 39196902 -163888630 + AT_rich Low_complexity Low_complexity 1 141 0 291 114 0 0 chr5 39196912 39196956 -163888576 + (TA)n Simple_repeat Simple_repeat 1 44 0 2193 20 0 16 chr5 39197350 39197600 -163887932 - AluY SINE Alu 0 311 66 206 277 15 0 chr5 39198152 39198217 -163887315 + GA-rich Low_complexity Low_complexity 2 67 0 2447 81 0 10 chr5 39199340 39199650 -163885882 + AluSx SINE Alu 1 307 -5 1427 198 55 4 chr5 39199686 39199959 -163885573 + AluJo SINE Alu 2 288 -24 2419 182 51 25 chr5 39201606 39202095 -163883437 - MLT1D LTR MaLR -3 502 1 372 356 153 13 chr5 39202440 39202676 -163882856 - L2 LINE L2 -11 3261 2993 760 317 79 22 chr5 39202815 39203222 -163882310 - L2 LINE L2 -2368 946 517 388 222 28 67 chr5 39203612 39203792 -163881740 - L1ME4a LINE L1 -14 6107 5935 226 208 0 0 chr5 39203781 39203834 -163881698 - L1MC4 LINE L1 -1337 6705 6653 * 273 57 0 0 chr5 39203835 39203870 -163881662 + (CA)n Simple_repeat Simple_repeat 2 36 0 1951 111 0 0 chr5 39203882 39204135 -163881397 - AluSx SINE Alu -26 286 34 1754 168 7 0 chr5 39204680 39204960 -163880572 - AluJb SINE Alu -26 286 5 447 247 96 14 chr5 39208279 39208498 -163877034 - L1MC4 LINE L1 -1916 5892 5656 2390 117 54 20 chr5 39209230 39209581 -163875951 - THE1B LTR MaLR -1 363 1 1795 184 113 76 chr5 39209703 39210188 -163875344 + MLT1D LTR MaLR 3 505 0 253 307 136 34 chr5 39210272 39210360 -163875172 - L2 LINE L2 -32 3240 3144 776 286 78 37 chr5 39210436 39210758 -163874774 + L2 LINE L2 2804 3138 -175 2303 107 10 0 chr5 39210765 39211073 -163874459 - AluSq SINE Alu -2 311 1 497 313 16 0 chr5 39211096 39211224 -163874308 + MER91A DNA MER1_type 49 178 -18 458 318 12 18 chr5 39211258 39211428 -163874104 + L2 LINE L2 3145 3313 0 2223 104 7 3 chr5 39211930 39212227 -163873305 + AluSx SINE Alu 1 298 -14 1783 85 55 27 chr5 39214585 39214878 -163870654 - AluSx SINE Alu -8 304 4 1341 119 30 5 chr5 39215532 39215757 -163869775 + AluSg/x SINE Alu 77 306 0 22 35 0 0 chr5 39215861 39215890 -163869642 + AT_rich Low_complexity Low_complexity 1 29 0 878 237 76 0 chr5 39215990 39216201 -163869331 - MIR SINE MIR -8 254 28 1985 151 10 0 chr5 39216202 39216506 -163869026 - AluJb SINE Alu -3 309 3 1257 183 28 0 chr5 39216537 39216750 -163868782 - MER20 DNA MER1_type 0 219 1 1305 167 139 0 chr5 39216758 39217039 -163868493 - MER33 DNA MER1_type 0 324 5 2332 178 23 16 chr5 39217110 39217538 -163867994 - LTR3 LTR ERVK 0 432 2 1623 138 73 4 chr5 39217538 39217799 -163867733 - AluSx SINE Alu -33 279 1 303 154 39 0 chr5 39218369 39218421 -163867111 - MER66A LTR ERV1 -141 337 284 198 231 154 77 chr5 39218508 39218651 -163866881 - L2 LINE L2 0 3313 3160 246 265 48 24 chr5 39218750 39218833 -163866699 - L2 LINE L2 -220 3052 2968 313 111 0 0 chr5 39219084 39219129 -163866403 - LTR12 LTR ERV1 -318 396 352 198 0 0 0 chr5 39219131 39219153 -163866379 + (A)n Simple_repeat Simple_repeat 1 22 0 196 325 38 12 chr5 39219700 39219780 -163865752 - MIR3 SINE MIR -15 193 112 467 286 170 6 chr5 39219792 39219963 -163865569 - MIR SINE MIR -2 260 62 1444 197 48 7 chr5 39220606 39220895 -163864637 + AluJb SINE Alu 1 301 -11 2467 81 0 7 chr5 39220969 39221279 -163864253 + AluSx SINE Alu 1 308 -4 402 21 0 0 chr5 39221279 39221353 -163864179 + (TG)n Simple_repeat Simple_repeat 1 121 0 402 21 0 0 chr5 39221353 39221400 -163864132 + (TG)n Simple_repeat Simple_repeat 2 48 0 483 135 0 0 chr5 39222103 39222177 -163863355 + L1MA10 LINE L1 6254 6327 -7 279 316 71 65 chr5 39222723 39222891 -163862641 - MIR SINE MIR -79 183 15 990 277 87 27 chr5 39223068 39223630 -163861902 - L2 LINE L2 -4 3309 2698 1676 230 40 44 chr5 39223634 39224230 -163861302 + L1MC5 LINE L1 6923 7516 -445 517 214 125 36 chr5 39224289 39224537 -163860995 + L1MC5 LINE L1 7644 7913 -48 579 288 64 17 chr5 39224548 39224784 -163860748 - L2 LINE L2 -611 2703 2457 405 213 197 16 chr5 39225181 39225308 -163860224 - MIR SINE MIR 0 262 113 273 325 147 45 chr5 39226465 39226730 -163858802 - L2 LINE L2 0 3272 2981 915 154 0 0 chr5 39226747 39226877 -163858655 - FLAM_C SINE Alu -3 130 1 2631 122 8 3 chr5 39227434 39227796 -163857736 - THE1B LTR MaLR 0 364 1 2141 108 4 0 chr5 39227941 39228219 -163857313 + AluSx SINE Alu 1 279 -33 918 261 139 14 chr5 39230091 39230592 -163854940 + L1MC4a LINE L1 5598 6189 -1619 510 189 71 77 chr5 39230763 39230932 -163854600 - MER46A DNA MER2_type -65 171 4 * 1028 150 24 12 chr5 39230789 39230956 -163854576 + MER46A DNA MER2_type 1 169 -67 1574 106 10 0 chr5 39231056 39231264 -163854268 + AluSc SINE Alu 80 289 -20 343 302 71 8 chr5 39231635 39231761 -163853771 - MER5A DNA MER1_type -1 188 55 225 281 45 34 chr5 39231768 39231857 -163853675 - MER5A DNA MER1_type -97 92 3 537 32 0 0 chr5 39232104 39232166 -163853366 + AluS SINE Alu 3 64 -249 520 108 0 0 chr5 39232266 39232340 -163853192 - AluSc SINE Alu -201 108 35 2201 122 10 0 chr5 39232401 39232704 -163852828 + AluJb SINE Alu 1 306 -6 308 325 88 9 chr5 39232864 39232978 -163852554 - MIR SINE MIR -118 144 22 543 228 69 73 chr5 39233000 39233019 -163852513 + MIR SINE MIR 22 40 -222 593 219 50 8 chr5 39233019 39233138 -163852394 - FLAM_A SINE Alu -8 125 2 543 228 69 73 chr5 39233138 39233351 -163852181 + MIR SINE MIR 40 253 -9 721 274 51 8 chr5 39233472 39233706 -163851826 + MIR SINE MIR 12 255 -7 1422 102 0 0 chr5 39234614 39234801 -163850731 + AluY SINE Alu 125 311 0 1045 205 186 53 chr5 39234864 39235186 -163850346 - MLT1A1 LTR MaLR 0 365 1 374 206 82 10 chr5 39235854 39235951 -163849581 + Charlie7 DNA MER1_type 5 108 -2504 481 295 104 33 chr5 39236728 39236969 -163848563 + MIR SINE MIR 5 262 0 184 333 134 18 chr5 39237672 39237843 -163847689 + L2 LINE L2 1785 1975 -1339 1480 162 4 4 chr5 39239564 39239799 -163845733 - MLT1A1 LTR MaLR -119 246 12 337 374 8 0 chr5 39240107 39240230 -163845302 - MER5A DNA MER1_type -3 186 63 222 118 0 0 chr5 39241125 39241159 -163844373 + (CATA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr5 39241385 39241405 -163844127 + (T)n Simple_repeat Simple_repeat 1 20 0 631 290 11 11 chr5 39241579 39241762 -163843770 - MIR SINE MIR -60 202 20 1084 231 61 95 chr5 39241775 39242005 -163843527 - L1MC4 LINE L1 0 8042 7806 1450 189 63 14 chr5 39242005 39242166 -163843366 - AluJb SINE Alu -13 299 116 189 0 0 0 chr5 39242166 39242187 -163843345 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1450 189 63 14 chr5 39242187 39242310 -163843222 - AluJb SINE Alu -196 116 1 1084 231 61 95 chr5 39242310 39242603 -163842929 - L1MC4 LINE L1 -236 7806 7537 6030 162 46 18 chr5 39243010 39243210 -163842322 - L1 LINE L1 -1679 4467 4274 306 50 0 0 chr5 39243210 39243250 -163842282 + (TG)n Simple_repeat Simple_repeat 1 40 0 6030 162 46 18 chr5 39243250 39244245 -163841287 - L1 LINE L1 -1872 4274 3239 1865 151 16 16 chr5 39244699 39245011 -163840521 - AluJb SINE Alu 0 312 1 369 0 0 0 chr5 39245109 39245150 -163840382 + (TG)n Simple_repeat Simple_repeat 2 42 0 544 237 34 8 chr5 39245288 39245406 -163840126 - L2 LINE L2 -5 3308 3188 1984 104 49 3 chr5 39245715 39246002 -163839530 + AluSq SINE Alu 1 300 -13 2193 100 14 0 chr5 39246835 39247124 -163838408 + AluSx SINE Alu 5 297 -15 482 266 6 57 chr5 39248334 39248492 -163837040 - MER5A DNA MER1_type -22 167 18 198 0 0 0 chr5 39249083 39249105 -163836427 + (TGG)n Simple_repeat Simple_repeat 2 23 0 587 234 63 0 chr5 39249147 39249305 -163836227 - MER5B DNA MER1_type -10 168 1 431 251 64 61 chr5 39250417 39250597 -163834935 - MIR SINE MIR -48 214 31 309 241 13 13 chr5 39251335 39251414 -163834118 - MIR SINE MIR -28 234 156 625 230 118 6 chr5 39251414 39251575 -163833957 - AluJo SINE Alu -13 299 121 261 269 54 46 chr5 39251831 39251961 -163833571 - L1ME4a LINE L1 -1 6120 5990 329 270 95 14 chr5 39252001 39252149 -163833383 - L1ME4a LINE L1 -205 5916 5757 650 261 31 36 chr5 39253758 39253953 -163831579 - MIR SINE MIR -61 201 8 380 239 0 72 chr5 39254130 39254268 -163831264 - MIR SINE MIR -1 261 134 564 231 82 14 chr5 39254359 39254569 -163830963 - MIR SINE MIR -1 261 32 28 71 0 0 chr5 39255828 39255884 -163829648 + AT_rich Low_complexity Low_complexity 1 56 0 4548 201 92 75 chr5 39256119 39256445 -163829087 + L1M4 LINE L1 3435 3754 -2392 234 250 0 0 chr5 39256445 39256489 -163829043 - 5S rRNA rRNA -77 44 1 4548 201 92 75 chr5 39256489 39257708 -163827824 + L1M4 LINE L1 3754 5050 -1096 1273 200 4 39 chr5 39257750 39258005 -163827527 + AluJo SINE Alu 43 288 -24 27 0 0 0 chr5 39258238 39258265 -163827267 + AT_rich Low_complexity Low_complexity 1 27 0 2372 104 0 0 chr5 39258493 39258800 -163826732 + AluSx SINE Alu 1 307 -5 265 242 33 22 chr5 39259544 39259635 -163825897 + L1M4 LINE L1 784 875 -5667 1066 177 100 9 chr5 39259697 39259917 -163825615 + L1MCa LINE L1 17 256 -6170 8625 196 55 69 chr5 39259919 39260289 -163825243 + L1MCa LINE L1 1800 2174 -4252 953 206 0 0 chr5 39260289 39260454 -163825078 + FRAM SINE Alu 1 165 -1 8625 196 55 69 chr5 39260454 39260986 -163824546 + L1MCa LINE L1 2174 2712 -3714 3181 79 56 7 chr5 39260986 39261418 -163824114 - MLT2A2 LTR ERVL 0 453 1 8625 196 55 69 chr5 39261418 39262494 -163823038 + L1MCa LINE L1 2712 3801 -2625 1599 79 5 0 chr5 39262494 39262708 -163822824 + L1PA7 LINE L1 5936 6150 -4 8625 196 55 69 chr5 39262708 39263123 -163822409 + L1MCa LINE L1 3801 4220 -2206 2425 109 0 0 chr5 39263123 39263436 -163822096 - AluSq SINE Alu 0 313 1 8625 196 55 69 chr5 39263436 39263932 -163821600 + L1MCa LINE L1 4220 4721 -1705 752 197 8 0 chr5 39263932 39264064 -163821468 + FLAM_A SINE Alu 1 133 0 8625 196 55 69 chr5 39264064 39264345 -163821187 + L1MCa LINE L1 4721 5054 -1372 3803 156 31 9 chr5 39264345 39265046 -163820486 + L1PB4 LINE L1 5437 6153 -3 2197 104 0 0 chr5 39265428 39265708 -163819824 + AluSc SINE Alu 1 280 -29 431 218 128 38 chr5 39265808 39266019 -163819513 - LTR30 LTR ERV1 -256 466 237 1766 198 17 83 chr5 39266217 39266686 -163818846 - MER57-int LTR ERV1 -1716 5821 5384 352 140 0 0 chr5 39266686 39266736 -163818796 + AluJ/FRAM SINE Alu 233 282 -20 231 167 0 0 chr5 39266704 39266740 -163818792 + Alu SINE Alu 84 119 -14 * 1951 132 0 17 chr5 39267679 39267968 -163817564 + AluJo SINE Alu 9 292 -20 1547 167 0 37 chr5 39268353 39268623 -163816909 - AluJo SINE Alu -25 287 28 185 0 40 0 chr5 39268713 39268738 -163816794 + (TTG)n Simple_repeat Simple_repeat 2 27 0 510 109 0 6 chr5 39271175 39271415 -163814117 + AluSx SINE Alu 1 290 -22 572 194 0 0 chr5 39271446 39271549 -163813983 + FLAM_A SINE Alu 6 108 -34 436 85 0 0 chr5 39271749 39271808 -163813724 + AluSg SINE Alu 2 60 -249 2345 106 0 0 chr5 39271880 39272183 -163813349 + AluSq SINE Alu 1 303 -10 1825 114 0 0 chr5 39272371 39272616 -163812916 + AluSg SINE Alu 62 306 -4 613 208 59 50 chr5 39272709 39272844 -163812688 - L2 LINE L2 -19 3294 3155 1720 138 66 14 chr5 39272844 39273133 -163812399 + AluJo SINE Alu 1 304 -8 613 208 59 50 chr5 39273133 39273218 -163812314 - L2 LINE L2 -158 3155 3072 1756 112 90 14 chr5 39273218 39273410 -163812122 - AluSq SINE Alu -14 299 123 1666 109 0 4 chr5 39273410 39273640 -163811892 - AluSg/x SINE Alu -3 307 79 3918 197 31 49 chr5 39273640 39274626 -163810906 - LTR5 LTR ERVK 0 969 1 1756 112 90 14 chr5 39274626 39274710 -163810822 - AluSq SINE Alu -189 124 1 2064 128 7 0 chr5 39275981 39276270 -163809262 + AluSq SINE Alu 1 291 -22 982 147 40 17 chr5 39276288 39276465 -163809067 + AluSx SINE Alu 1 181 -131 321 162 40 27 chr5 39276465 39276539 -163808993 + AluY SINE Alu 46 120 -181 1226 142 82 92 chr5 39276725 39276835 -163808697 + AluJo SINE Alu 19 129 -183 2151 117 3 10 chr5 39276835 39277133 -163808399 + AluSq SINE Alu 1 296 -17 1226 142 82 92 chr5 39277133 39277304 -163808228 + AluJo SINE Alu 129 297 -15 355 246 182 5 chr5 39277634 39277821 -163807711 + L1M4 LINE L1 4080 4299 -1847 224 226 16 0 chr5 39277821 39277883 -163807649 + (CA)n Simple_repeat Simple_repeat 2 64 0 2216 105 7 3 chr5 39277891 39278186 -163807346 - AluSx SINE Alu -16 296 1 1557 158 34 47 chr5 39278635 39278933 -163806599 - AluJb SINE Alu -10 302 9 1239 214 134 51 chr5 39278978 39279236 -163806296 + L1M4 LINE L1 4385 4620 -1526 2401 99 0 0 chr5 39279236 39279540 -163805992 + AluSx SINE Alu 1 304 -8 1239 214 134 51 chr5 39279540 39279596 -163805936 + L1M4 LINE L1 4620 4670 -1476 2745 36 0 0 chr5 39279596 39279901 -163805631 + AluY SINE Alu 1 305 -6 1239 214 134 51 chr5 39279901 39280198 -163805334 + L1M4 LINE L1 4670 5048 -1098 1074 191 106 0 chr5 39280302 39280538 -163804994 + MER57A LTR ERV1 142 402 -1 286 339 65 11 chr5 39280676 39280862 -163804670 + L2 LINE L2 2856 3051 -221 209 254 34 0 chr5 39280967 39281026 -163804506 - MIR SINE MIR -19 243 183 321 324 21 41 chr5 39281038 39281183 -163804349 + L2 LINE L2 3116 3257 -15 2188 137 0 9 chr5 39282021 39282336 -163803196 + AluSx SINE Alu 1 312 0 200 214 24 0 chr5 39282518 39282560 -163802972 + (CA)n Simple_repeat Simple_repeat 1 43 0 217 286 0 26 chr5 39282635 39282712 -163802820 - L2 LINE L2 -12 3301 3227 180 77 0 0 chr5 39282744 39282770 -163802762 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 455 283 17 11 chr5 39282906 39283083 -163802449 + (TGAA)n Simple_repeat Simple_repeat 3 180 0 237 119 0 0 chr5 39283147 39283189 -163802343 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 1266 216 0 8 chr5 39283389 39283644 -163801888 + L1PB4 LINE L1 5892 6144 -12 1892 89 0 0 chr5 39283645 39283881 -163801651 + AluY SINE Alu 60 295 -16 213 292 0 26 chr5 39284397 39284510 -163801022 + CT-rich Low_complexity Low_complexity 1 110 0 310 377 0 22 chr5 39284575 39284758 -163800774 + CT-rich Low_complexity Low_complexity 2 180 0 * 345 343 0 23 chr5 39284647 39284819 -163800713 + C-rich Low_complexity Low_complexity 1 168 0 458 286 15 23 chr5 39285278 39285411 -163800121 + MER57-int LTR ERV1 5825 5956 -1581 1059 247 13 0 chr5 39285492 39285723 -163799809 + MER57-int LTR ERV1 5966 6199 -1338 747 154 0 0 chr5 39286283 39286393 -163799139 + FLAM_C SINE Alu 2 111 -32 212 59 29 0 chr5 39286399 39286433 -163799099 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 1876 115 51 90 chr5 39287273 39287456 -163798076 + THE1C LTR MaLR 1 163 -212 189 0 0 0 chr5 39287456 39287477 -163798055 + (TC)n Simple_repeat Simple_repeat 1 21 0 1876 115 51 90 chr5 39287477 39287683 -163797849 + THE1C LTR MaLR 163 375 0 925 275 21 74 chr5 39287896 39288031 -163797501 + MER57-int LTR ERV1 6794 6935 -602 2119 113 3 13 chr5 39288031 39288332 -163797200 + AluJb SINE Alu 1 298 -14 925 275 21 74 chr5 39288332 39288574 -163796958 + MER57-int LTR ERV1 6935 7151 -386 257 220 0 0 chr5 39288579 39288629 -163796903 + MER57A LTR ERV1 42 91 -312 2262 119 0 0 chr5 39288643 39288953 -163796579 - AluSx SINE Alu -2 310 1 1053 110 0 0 chr5 39288953 39289089 -163796443 - AluSq/x SINE Alu -177 136 1 26 0 0 0 chr5 39289160 39289186 -163796346 + AT_rich Low_complexity Low_complexity 1 26 0 286 250 145 40 chr5 39291122 39291246 -163794286 + MIR SINE MIR 114 250 -12 470 260 105 47 chr5 39291274 39291532 -163794000 - L2 LINE L2 0 3313 3041 488 281 51 39 chr5 39291644 39291900 -163793632 - L2 LINE L2 -454 2860 2602 1517 252 155 31 chr5 39291940 39292132 -163793400 - L1ME3A LINE L1 -3 6167 6000 2230 111 0 3 chr5 39292132 39292430 -163793102 - AluSg SINE Alu -13 297 1 1517 252 155 31 chr5 39292430 39292780 -163792752 - L1ME3A LINE L1 -170 6000 5558 668 152 9 0 chr5 39292780 39292885 -163792647 - Tigger7 DNA MER2_type 0 2487 2382 1199 216 5 0 chr5 39292898 39293106 -163792426 - Tigger7 DNA MER2_type -2257 230 22 2585 74 0 0 chr5 39293107 39293417 -163792115 + AluY SINE Alu 1 310 -1 1494 77 0 15 chr5 39293546 39293741 -163791791 - MER107 DNA MER1_type -1 196 5 342 224 46 40 chr5 39294441 39294593 -163790939 + (CAGAGA)n Simple_repeat Simple_repeat 2 154 0 1194 174 0 14 chr5 39294628 39294906 -163790626 + AluJo SINE Alu 1 310 0 335 325 6 6 chr5 39295335 39295414 -163790118 + GA-rich Low_complexity Low_complexity 2 80 -90 2119 132 7 0 chr5 39295414 39295717 -163789815 + AluSx SINE Alu 1 305 -7 335 325 6 6 chr5 39295717 39295806 -163789726 + GA-rich Low_complexity Low_complexity 79 170 0 1618 149 37 34 chr5 39296051 39296346 -163789186 - AluJo SINE Alu -12 300 5 484 295 55 32 chr5 39296463 39296664 -163788868 + MIR SINE MIR 17 211 -51 364 305 6 11 chr5 39297130 39297307 -163788225 + GA-rich Low_complexity Low_complexity 1 176 0 1262 105 0 6 chr5 39297355 39297527 -163788005 - AluSc SINE Alu -7 302 132 2376 102 0 7 chr5 39297529 39297833 -163787699 - AluSx SINE Alu -10 302 1 24 0 0 0 chr5 39297959 39297983 -163787549 + AT_rich Low_complexity Low_complexity 1 24 0 1410 146 0 9 chr5 39298124 39298343 -163787189 - AluSg/x SINE Alu -13 297 81 226 353 20 33 chr5 39298355 39298508 -163787024 - MER5A DNA MER1_type -5 184 34 305 238 12 0 chr5 39298525 39298605 -163786927 + L1ME4a LINE L1 5961 6041 -80 223 246 115 0 chr5 39299100 39299161 -163786371 + MIR SINE MIR 77 144 -118 183 80 0 0 chr5 39299437 39299462 -163786070 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 357 265 88 24 chr5 39300957 39301127 -163784405 - L2 LINE L2 -359 2955 2775 777 218 50 42 chr5 39301129 39301343 -163784189 + MIR SINE MIR 10 228 -34 407 97 0 86 chr5 39301343 39301388 -163784144 + L1PA11 LINE L1 6086 6121 -53 2571 71 3 3 chr5 39301388 39301698 -163783834 + AluSp SINE Alu 1 310 -3 407 97 0 86 chr5 39301698 39301745 -163783787 + L1PA11 LINE L1 6121 6170 -4 777 218 50 42 chr5 39301745 39301769 -163783763 + MIR SINE MIR 228 250 -12 815 165 0 0 chr5 39302630 39302763 -163782769 + FLAM_C SINE Alu 1 133 0 221 316 0 58 chr5 39302786 39302920 -163782612 + GA-rich Low_complexity Low_complexity 1 126 -53 1719 119 34 72 chr5 39302920 39303272 -163782260 + AluSx SINE Alu 1 341 0 221 316 0 58 chr5 39303272 39303324 -163782208 + GA-rich Low_complexity Low_complexity 126 179 0 510 163 0 0 chr5 39303459 39303539 -163781993 + AluJb SINE Alu 46 125 -187 2566 67 0 0 chr5 39303666 39303966 -163781566 + AluY SINE Alu 1 300 -11 2102 98 14 0 chr5 39304455 39304731 -163780801 + AluSx SINE Alu 1 280 -32 276 30 0 0 chr5 39304731 39304764 -163780768 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 2224 109 3 31 chr5 39304779 39305099 -163780433 + AluSx SINE Alu 2 312 0 361 177 89 0 chr5 39305114 39305193 -163780339 + FLAM_A SINE Alu 43 128 -5 1392 125 0 5 chr5 39305503 39305695 -163779837 - AluSx SINE Alu -121 191 1 1788 146 0 0 chr5 39305698 39305951 -163779581 - AluJo SINE Alu -10 302 50 2923 100 20 11 chr5 39305958 39306408 -163779124 - LTR15 LTR ERV1 -6 487 34 1254 134 0 6 chr5 39306565 39306744 -163778788 - AluSg/x SINE Alu -16 296 119 401 131 0 0 chr5 39306744 39306805 -163778727 + AluS SINE Alu 233 293 -7 297 290 85 54 chr5 39307336 39307539 -163777993 - MIR SINE MIR -18 244 32 2179 117 7 7 chr5 39307539 39307838 -163777694 - AluSx SINE Alu -13 299 1 297 290 85 54 chr5 39307838 39307858 -163777674 - MIR SINE MIR -230 32 14 1096 194 85 32 chr5 39308304 39308552 -163776980 - AluJo SINE Alu -15 297 37 419 287 93 16 chr5 39308560 39308818 -163776714 + L1ME LINE L1 5521 5798 -323 2428 65 0 0 chr5 39308869 39309160 -163776372 - AluY SINE Alu -20 291 1 591 312 43 4 chr5 39309160 39309394 -163776138 - LTR33 LTR ERVL -65 456 214 391 229 86 50 chr5 39309423 39309563 -163775969 - LTR33 LTR ERVL -376 145 1 1903 156 7 0 chr5 39309573 39309856 -163775676 + AluSg SINE Alu 15 299 -11 2862 157 5 74 chr5 39310065 39310327 -163775205 + L1PA16 LINE L1 5512 5791 -375 2109 135 0 13 chr5 39310327 39310639 -163774893 + AluSx SINE Alu 1 308 -4 2862 157 5 74 chr5 39310639 39310995 -163774537 + L1PA16 LINE L1 5791 6093 -73 972 194 83 12 chr5 39311103 39311345 -163774187 + MLT1D LTR MaLR 180 438 -67 273 98 0 0 chr5 39311352 39311393 -163774139 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 1591 189 0 14 chr5 39311403 39311678 -163773854 - AluJo SINE Alu -41 271 1 1183 189 9 0 chr5 39311679 39311896 -163773636 - MLT1D LTR MaLR -286 219 1 459 310 38 16 chr5 39311956 39312140 -163773392 - MIR SINE MIR -69 193 6 1354 173 46 25 chr5 39312175 39312310 -163773222 + AluJb SINE Alu 1 132 -180 1882 128 58 7 chr5 39312310 39312584 -163772948 + AluSx SINE Alu 1 288 -24 1354 173 46 25 chr5 39312584 39312732 -163772800 + AluJb SINE Alu 132 290 -22 655 175 0 16 chr5 39312763 39312889 -163772643 + FLAM_A SINE Alu 6 129 -13 692 120 32 8 chr5 39314954 39315079 -163770453 + L1MC2 LINE L1 6066 6193 -151 260 331 40 20 chr5 39315667 39315818 -163769714 - MIR SINE MIR 0 262 109 234 148 74 0 chr5 39316171 39316225 -163769307 - L1M4 LINE L1 -966 5180 5123 245 105 0 0 chr5 39316362 39316400 -163769132 + Alu SINE Alu 257 294 -8 31 44 0 0 chr5 39316412 39316457 -163769075 + AT_rich Low_complexity Low_complexity 1 45 0 752 220 70 15 chr5 39316700 39316900 -163768632 + MIR SINE MIR 28 238 -24 377 211 179 70 chr5 39316916 39316973 -163768559 - MIR SINE MIR -54 208 159 1921 153 10 0 chr5 39316973 39317268 -163768264 - AluJo SINE Alu -14 298 1 377 211 179 70 chr5 39317268 39317366 -163768166 - MIR SINE MIR -103 159 36 649 153 8 6 chr5 39318214 39318477 -163767055 + AluJ SINE Alu 1 312 0 2416 83 0 3 chr5 39318701 39319003 -163766529 - AluY SINE Alu -1 310 10 1592 162 23 50 chr5 39319021 39319324 -163766208 - AluJo SINE Alu -17 295 1 481 190 52 17 chr5 39319333 39319449 -163766083 - MIR SINE MIR -111 151 32 1657 142 10 52 chr5 39319478 39319654 -163765878 - AluJb SINE Alu -5 307 146 2229 115 0 29 chr5 39319654 39319967 -163765565 - AluSx SINE Alu -8 304 1 1657 142 10 52 chr5 39319967 39320079 -163765453 - AluJb SINE Alu -166 146 31 2291 108 0 37 chr5 39320348 39320672 -163764860 - AluSx SINE Alu 0 312 1 182 91 30 0 chr5 39321086 39321119 -163764413 + GA-rich Low_complexity Low_complexity 1 34 0 185 194 0 48 chr5 39321357 39321419 -163764113 + GA-rich Low_complexity Low_complexity 2 60 0 1614 140 0 0 chr5 39321450 39321678 -163763854 + AluJb SINE Alu 47 274 -38 211 120 20 40 chr5 39321683 39321733 -163763799 + GA-rich Low_complexity Low_complexity 3 51 0 606 194 31 0 chr5 39321739 39321868 -163763664 + FLAM_A SINE Alu 1 133 0 520 200 50 17 chr5 39321900 39322020 -163763512 - L2 LINE L2 -3 3310 3187 202 279 39 19 chr5 39322345 39322449 -163763083 + (CAGAGA)n Simple_repeat Simple_repeat 4 109 0 199 140 40 0 chr5 39322450 39322500 -163763032 + GA-rich Low_complexity Low_complexity 1 52 0 1912 167 0 3 chr5 39322534 39322828 -163762704 + AluJo SINE Alu 1 293 -19 605 238 97 7 chr5 39323117 39323312 -163762220 + MER57A LTR ERV1 206 403 0 2179 121 7 0 chr5 39324243 39324533 -163760999 + AluSx SINE Alu 1 292 -20 4306 179 32 53 chr5 39324717 39325693 -163759839 + LTR5 LTR ERVK 1 955 -14 428 246 98 16 chr5 39326927 39327049 -163758483 - MIR SINE MIR -50 212 81 311 183 56 56 chr5 39327059 39327130 -163758402 + MER33 DNA MER1_type 1 71 -253 1340 145 85 0 chr5 39327131 39327379 -163758153 + L1PB4 LINE L1 5710 5978 -178 869 257 8 13 chr5 39327373 39327610 -163757922 - L1M4 LINE L1 -2008 4138 3903 * 3245 99 15 27 chr5 39327612 39328664 -163756868 - MER11A LTR ERVK 0 1266 139 1155 20 0 20 chr5 39328981 39329128 -163756404 - L1PA5 LINE L1 -4 6150 6007 3837 36 2 0 chr5 39329128 39329601 -163755931 - L1PA5 LINE L1 -359 5795 5322 1276 38 0 0 chr5 39329601 39329761 -163755771 - L1PA4 LINE L1 -6 6149 5990 1300 38 0 0 chr5 39329761 39329921 -163755611 + L1PA4 LINE L1 5820 5979 -176 * 4477 77 15 3 chr5 39329911 39330573 -163754959 - L1PA5 LINE L1 -815 5331 4662 622 128 4 124 chr5 39330677 39330927 -163754605 + LTR15 LTR ERV1 222 441 -52 304 95 0 143 chr5 39331000 39331105 -163754427 + AluJo SINE Alu 50 139 -163 1197 141 0 35 chr5 39331317 39331515 -163754017 + AluSx SINE Alu 1 191 -121 920 74 99 0 chr5 39331737 39331858 -163753674 + AluSq/x SINE Alu 1 133 -180 1417 151 72 82 chr5 39331863 39331993 -163753539 + AluJo SINE Alu 1 131 -181 2086 121 3 13 chr5 39331993 39332291 -163753241 + AluSq SINE Alu 1 295 -18 1417 151 72 82 chr5 39332291 39332465 -163753067 + AluJo SINE Alu 131 302 -10 240 210 16 0 chr5 39332979 39333041 -163752491 + (CA)n Simple_repeat Simple_repeat 2 64 0 2273 98 7 3 chr5 39333049 39333344 -163752188 - AluSx SINE Alu -16 296 1 1643 159 32 45 chr5 39333790 39334099 -163751433 - AluJb SINE Alu -7 305 1 1611 228 110 35 chr5 39334136 39334400 -163751132 + L1M4 LINE L1 4385 4628 -1518 2258 115 0 0 chr5 39334400 39334696 -163750836 + AluSx SINE Alu 1 296 -16 1611 228 110 35 chr5 39334696 39335094 -163750438 + L1M4 LINE L1 4628 5097 -1049 573 195 17 17 chr5 39335254 39335428 -163750104 + CT-rich Low_complexity Low_complexity 3 176 0 207 0 0 0 chr5 39335433 39335456 -163750076 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 2211 128 0 3 chr5 39335464 39335762 -163749770 - AluJb SINE Alu -15 297 1 4708 145 23 23 chr5 39335780 39336676 -163748856 - L1MA3 LINE L1 -19 6286 5391 2333 146 65 2 chr5 39336676 39337079 -163748453 + MSTA LTR MaLR 1 428 0 2224 111 0 10 chr5 39337090 39337387 -163748145 - AluSx SINE Alu -13 299 6 303 75 0 0 chr5 39337388 39337428 -163748104 + MSTA LTR MaLR 388 427 -1 4038 175 13 13 chr5 39337429 39338298 -163747234 - L1MA3 LINE L1 -543 5801 5254 1864 156 0 0 chr5 39338298 39338573 -163746959 - AluSx SINE Alu -37 275 1 4038 175 13 13 chr5 39338573 39339334 -163746198 - L1MA3 LINE L1 -1090 5254 4495 1859 108 40 0 chr5 39339521 39339772 -163745760 - AluSc SINE Alu -48 261 1 841 128 0 8 chr5 39339772 39339889 -163745643 - AluSq/x SINE Alu -197 116 1 2499 74 3 0 chr5 39339899 39340195 -163745337 - AluSp SINE Alu -16 297 1 2491 71 10 0 chr5 39340195 39340492 -163745040 - AluSc SINE Alu -9 300 1 507 318 77 24 chr5 39340493 39341005 -163744527 - L2 LINE L2 -233 3080 2542 225 276 86 69 chr5 39341008 39341048 -163744484 + L2 LINE L2 2626 2664 -608 2433 62 0 23 chr5 39341048 39341353 -163744179 - AluY SINE Alu 0 311 14 2062 129 0 43 chr5 39341353 39341542 -163743990 - AluSx SINE Alu -1 311 140 2404 85 0 7 chr5 39341542 39341848 -163743684 - AluSc SINE Alu -5 304 1 2062 129 0 43 chr5 39341848 39341983 -163743549 - AluSx SINE Alu -172 140 1 225 276 86 69 chr5 39341983 39342323 -163743209 + L2 LINE L2 2663 3040 -232 1887 138 24 7 chr5 39342335 39342626 -163742906 - AluSx SINE Alu -16 296 1 517 194 78 8 chr5 39342749 39342878 -163742654 - L2 LINE L2 -719 2595 2458 489 257 49 7 chr5 39342929 39343073 -163742459 + MIR SINE MIR 113 262 0 775 138 32 186 chr5 39343347 39343463 -163742069 - L1MB5 LINE L1 -8 6166 6108 2289 114 13 0 chr5 39343463 39343770 -163741762 - AluSx SINE Alu -1 311 1 775 138 32 186 chr5 39343770 39343906 -163741626 - L1MB5 LINE L1 -66 6108 5953 2155 128 3 19 chr5 39343922 39344234 -163741298 - AluJb SINE Alu -5 307 1 185 35 69 0 chr5 39344234 39344263 -163741269 + T-rich Low_complexity Low_complexity 2 32 0 914 149 70 152 chr5 39344268 39344338 -163741194 - AluJo SINE Alu 0 302 228 2161 104 0 0 chr5 39344338 39344663 -163740869 + AluSg SINE Alu 2 326 0 914 149 70 152 chr5 39344663 39344760 -163740772 - AluJo SINE Alu -74 228 125 2214 97 10 19 chr5 39344760 39345069 -163740463 - AluSq SINE Alu -7 306 1 914 149 70 152 chr5 39345069 39345226 -163740306 - AluJo SINE Alu -177 125 1 378 238 69 0 chr5 39345237 39345338 -163740194 + MER112 DNA MER1_type 116 223 -37 394 167 15 0 chr5 39345348 39345414 -163740118 - MER5B DNA MER1_type -22 156 90 728 112 0 9 chr5 39345450 39345557 -163739975 - FLAM_C SINE Alu -25 118 13 2175 88 3 79 chr5 39345557 39345886 -163739646 + AluY SINE Alu 1 304 -7 232 203 40 40 chr5 39345886 39345960 -163739572 + MER5B DNA MER1_type 104 177 -1 360 0 0 0 chr5 39346062 39346102 -163739430 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2232 88 11 0 chr5 39346104 39346387 -163739145 - AluSg SINE Alu -24 286 1 252 0 0 0 chr5 39346388 39346416 -163739116 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2236 102 3 0 chr5 39346416 39346699 -163738833 - AluSp SINE Alu -29 284 1 1912 153 7 3 chr5 39346701 39346989 -163738543 - AluJb SINE Alu -19 293 5 2280 113 3 3 chr5 39347720 39348031 -163737501 - AluSp SINE Alu -2 311 1 1618 185 3 24 chr5 39348506 39348804 -163736728 + AluJo SINE Alu 1 292 -20 233 229 0 0 chr5 39349176 39349224 -163736308 - Alu SINE Alu -168 134 87 192 77 0 0 chr5 39349763 39349789 -163735743 + (CCCCG)n Simple_repeat Simple_repeat 1 26 0 226 191 44 0 chr5 39349846 39349914 -163735618 + (CGGGG)n Simple_repeat Simple_repeat 3 73 0 220 270 0 44 chr5 39349966 39350103 -163735429 + (CGGGG)n Simple_repeat Simple_repeat 1 131 0 * 267 283 11 28 chr5 39350024 39350204 -163735328 + G-rich Low_complexity Low_complexity 4 180 0 324 300 84 14 chr5 39351791 39351947 -163733585 + MIR SINE MIR 35 200 -62 240 319 8 35 chr5 39354535 39354712 -163730820 + CT-rich Low_complexity Low_complexity 1 172 0 591 15 0 0 chr5 39354718 39354786 -163730746 + (TC)n Simple_repeat Simple_repeat 1 68 0 592 97 0 6 chr5 39356944 39357184 -163728348 + AluSx SINE Alu 1 287 -22 707 175 0 16 chr5 39357215 39357341 -163728191 + FLAM_A SINE Alu 6 129 -13 681 113 40 8 chr5 39359406 39359530 -163726002 + L1MC2 LINE L1 6066 6193 -151 258 336 107 7 chr5 39360119 39360259 -163725273 - MIR SINE MIR 0 262 109 228 164 73 0 chr5 39360608 39360663 -163724869 - L1M4 LINE L1 -966 5180 5122 4108 160 24 19 chr5 39360931 39361759 -163723773 + L1MC2 LINE L1 4962 5795 -549 1977 140 3 10 chr5 39361759 39362073 -163723459 + AluSx SINE Alu 1 312 0 4108 160 24 19 chr5 39362073 39362280 -163723252 + L1MC2 LINE L1 5795 6000 -344 720 174 106 0 chr5 39362277 39362409 -163723123 - L1M1 LINE L1 -6007 1558 1413 * 4949 198 11 60 chr5 39362406 39362943 -163722589 + L1MA3 LINE L1 3840 4402 -1744 1233 156 0 19 chr5 39362943 39363154 -163722378 + AluJb SINE Alu 85 291 -21 4949 198 11 60 chr5 39363154 39364173 -163721359 + L1MA3 LINE L1 4402 5395 -751 299 75 0 0 chr5 39364174 39364214 -163721318 - MSTA LTR MaLR -1 427 388 2099 96 17 7 chr5 39364215 39364508 -163721024 + AluSx SINE Alu 6 301 -11 2635 140 54 2 chr5 39364519 39364926 -163720606 - MSTA LTR MaLR 0 428 1 4892 142 24 7 chr5 39364926 39365807 -163719725 + L1MA3 LINE L1 5391 6286 -19 2051 136 0 3 chr5 39365825 39366126 -163719406 + AluJb SINE Alu 1 300 -12 657 203 17 11 chr5 39366130 39366307 -163719225 + GA-rich Low_complexity Low_complexity 1 178 0 246 94 0 0 chr5 39366307 39366339 -163719193 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 804 92 64 21 chr5 39366640 39366781 -163718751 - AluSx SINE Alu -135 177 31 1384 115 0 5 chr5 39367002 39367194 -163718338 - AluSx SINE Alu -121 191 1 1639 150 0 4 chr5 39367197 39367450 -163718082 - AluJo SINE Alu -11 301 50 2871 109 20 11 chr5 39367457 39367907 -163717625 - LTR15 LTR ERV1 -6 487 34 1175 135 0 6 chr5 39368064 39368242 -163717290 - AluSg/x SINE Alu -17 295 119 450 147 0 0 chr5 39368242 39368317 -163717215 + AluS SINE Alu 232 306 -3 311 309 43 22 chr5 39368826 39368965 -163716567 - MIR SINE MIR -18 244 103 2190 105 7 3 chr5 39369024 39369329 -163716203 - AluSx SINE Alu -6 306 1 1083 169 83 51 chr5 39369800 39370054 -163715478 - AluJo SINE Alu -14 298 37 525 296 86 15 chr5 39370062 39370329 -163715203 + L1MC/D LINE L1 5521 5806 -2002 588 294 78 19 chr5 39370329 39370378 -163715154 - LTR33 LTR ERVL -8 513 468 2247 109 0 0 chr5 39370378 39370689 -163714843 - AluY SINE Alu 0 311 1 588 294 78 19 chr5 39370689 39370908 -163714624 - LTR33 LTR ERVL -53 468 229 566 361 9 37 chr5 39371058 39371355 -163714177 - ERVL LTR ERVL -4435 1329 1048 2099 141 0 0 chr5 39371355 39371667 -163713865 - AluSx SINE Alu 0 312 1 566 361 9 37 chr5 39371667 39371826 -163713706 - ERVL LTR ERVL -4716 1048 886 1880 126 25 0 chr5 39371842 39372145 -163713387 + AluSx SINE Alu 1 310 0 473 315 47 37 chr5 39372238 39372497 -163713035 - ERVL LTR ERVL -5089 675 411 1719 191 0 0 chr5 39372497 39372795 -163712737 + AluJo SINE Alu 1 298 -14 473 315 47 37 chr5 39372795 39372856 -163712676 - ERVL LTR ERVL -5353 411 352 243 88 0 0 chr5 39372890 39372924 -163712608 + (TTA)n Simple_repeat Simple_repeat 2 35 0 252 330 34 25 chr5 39372924 39373042 -163712490 - MIR SINE MIR -124 138 20 1822 225 19 65 chr5 39373446 39373921 -163711611 + MSTB2 LTR MaLR 5 457 0 1729 164 0 11 chr5 39373994 39374280 -163711252 + AluSx SINE Alu 3 285 -27 679 276 27 5 chr5 39374518 39374739 -163710793 + L1MC/D LINE L1 5575 5800 -2008 452 222 28 0 chr5 39374739 39374847 -163710685 - LTR33 LTR ERVL 0 521 411 1515 148 20 128 chr5 39374954 39375299 -163710233 + AluYb8 SINE Alu 1 308 0 2114 99 16 10 chr5 39375307 39375610 -163709922 + AluSq SINE Alu 1 305 -8 1750 151 0 7 chr5 39375733 39376039 -163709493 + AluSx SINE Alu 1 304 0 1202 199 57 37 chr5 39376051 39376348 -163709184 + AluJo SINE Alu 3 305 -7 792 138 231 0 chr5 39376369 39376529 -163709003 + MSTA LTR MaLR 1 197 -231 2135 113 3 0 chr5 39376530 39376821 -163708711 + AluSx SINE Alu 1 292 -20 1956 98 27 27 chr5 39377387 39377682 -163707850 + AluSq SINE Alu 1 295 -18 236 294 39 59 chr5 39377708 39377861 -163707671 + MIR SINE MIR 63 212 -50 2087 104 17 0 chr5 39378029 39378328 -163707204 + AluY SINE Alu 1 304 -7 220 288 12 25 chr5 39379107 39379187 -163706345 - MIR3 SINE MIR -6 202 124 * 368 313 187 11 chr5 39379184 39379366 -163706166 - MIR SINE MIR -3 259 46 351 289 84 14 chr5 39380487 39380643 -163704889 + MIR SINE MIR 35 200 -62 2024 18 4 0 chr5 39383592 39383821 -163701711 - SVA Other Other 0 1386 1157 388 252 85 78 chr5 39387325 39387565 -163697967 - MIR SINE MIR -29 233 1 226 363 11 0 chr5 39387781 39387872 -163697660 - MIR SINE MIR -61 147 56 351 268 290 0 chr5 39387958 39388096 -163697436 + MER5B DNA MER1_type 1 178 0 224 172 17 0 chr5 39388602 39388660 -163696872 + G-rich Low_complexity Low_complexity 5 63 0 1991 119 17 0 chr5 39390943 39391238 -163694294 + AluSx SINE Alu 1 300 -12 474 183 5 28 chr5 39393372 39393547 -163691985 + MSR1 Satellite Satellite 1 170 -6 1876 132 44 0 chr5 39394447 39394742 -163690790 - AluSq SINE Alu -5 308 1 440 262 273 4 chr5 39395456 39395712 -163689820 + L1M2 LINE L1 1734 4007 -2841 1248 153 5 0 chr5 39395819 39396047 -163689485 + AluSg/x SINE Alu 87 315 0 685 215 13 27 chr5 39396062 39396211 -163689321 + AluJo SINE Alu 9 155 -157 214 263 0 66 chr5 39397913 39397989 -163687543 - MIR SINE MIR -112 150 80 218 313 31 10 chr5 39398500 39398596 -163686936 + G-rich Low_complexity Low_complexity 4 101 0 379 290 54 21 chr5 39398704 39398890 -163686642 - MIR SINE MIR 0 262 71 4454 145 25 13 chr5 39399437 39400495 -163685037 + L1MC2 LINE L1 4962 6033 -311 2138 85 23 7 chr5 39400501 39400807 -163684725 - AluY SINE Alu 0 311 1 348 48 0 250 chr5 39400808 39400892 -163684640 + MLT1C LTR MaLR 403 465 -2 1368 211 64 43 chr5 39400894 39401093 -163684439 + L1MB8 LINE L1 5748 5941 -237 2101 119 0 0 chr5 39401093 39401388 -163684144 + AluSx SINE Alu 1 295 -17 1368 211 64 43 chr5 39401388 39401610 -163683922 + L1MB8 LINE L1 5941 6178 0 205 345 86 0 chr5 39401916 39402032 -163683500 + L2 LINE L2 3141 3266 -6 2022 106 7 0 chr5 39402067 39402351 -163683181 - AluSc SINE Alu -18 291 6 2049 116 3 7 chr5 39402469 39402772 -163682760 - AluSx SINE Alu -10 302 1 484 276 5 70 chr5 39403198 39403412 -163682120 + LTR16B LTR ERVL 256 455 -9 1854 112 32 11 chr5 39403439 39403738 -163681794 - AluSx SINE Alu 0 305 1 227 322 0 34 chr5 39404145 39404263 -163681269 + LTR67 LTR ERVL 434 547 -10 2131 115 0 3 chr5 39404263 39404568 -163680964 + AluSx SINE Alu 1 304 -8 941 251 125 49 chr5 39404647 39405100 -163680432 + L2 LINE L2 2450 2867 -446 1962 132 7 3 chr5 39405100 39405403 -163680129 - AluSx SINE Alu -8 304 1 941 251 125 49 chr5 39405403 39405734 -163679798 + L2 LINE L2 2867 3312 -1 1930 139 0 0 chr5 39405826 39406120 -163679412 + AluSx SINE Alu 1 294 -18 185 132 53 0 chr5 39406663 39406701 -163678831 + MIR SINE MIR 147 186 -76 198 313 0 36 chr5 39407048 39407131 -163678401 + MIR SINE MIR 107 186 -76 199 245 0 38 chr5 39407244 39407297 -163678235 - L2 LINE L2 -1 3312 3262 * 218 298 115 101 chr5 39407265 39407483 -163678049 - MIR SINE MIR -14 248 28 2094 119 0 0 chr5 39407496 39407799 -163677733 - AluSx SINE Alu -4 308 6 921 271 92 3 chr5 39407843 39408138 -163677394 + MER58B DNA MER1_type 1 321 -20 231 36 0 0 chr5 39408840 39408868 -163676664 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 1948 114 38 0 chr5 39408959 39409248 -163676284 - AluSg SINE Alu -10 300 1 389 280 46 46 chr5 39409524 39409690 -163675842 + MIR SINE MIR 88 256 -6 2099 135 0 0 chr5 39409690 39410002 -163675530 - AluSx SINE Alu 0 312 1 198 297 47 31 chr5 39410142 39410206 -163675326 + L3 LINE CR1 1400 1464 -113 1122 249 86 80 chr5 39410255 39410490 -163675042 + MLT1D LTR MaLR 5 237 -268 1878 134 17 0 chr5 39410490 39410789 -163674743 + AluSx SINE Alu 1 304 -8 1122 249 86 80 chr5 39410789 39411040 -163674492 + MLT1D LTR MaLR 237 494 -11 331 289 0 0 chr5 39411130 39411213 -163674319 + MIR SINE MIR 174 256 -6 2121 86 7 0 chr5 39411370 39411670 -163673862 + AluSq SINE Alu 1 302 0 297 0 0 0 chr5 39411902 39411935 -163673597 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 780 112 28 14 chr5 39412017 39412160 -163673372 + L1MB2 LINE L1 6019 6163 -8 845 204 6 0 chr5 39412322 39412494 -163673038 - FRAM SINE Alu -7 169 1 2297 60 0 3 chr5 39412502 39412784 -163672748 - AluY SINE Alu -14 297 17 255 331 29 0 chr5 39413380 39413555 -163671977 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 528 68 0 0 chr5 39413609 39413682 -163671850 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 2201 94 10 0 chr5 39413877 39414175 -163671357 + AluSp SINE Alu 3 303 -10 234 0 0 0 chr5 39414175 39414201 -163671331 + (TA)n Simple_repeat Simple_repeat 2 27 0 300 327 134 45 chr5 39414238 39414326 -163671206 + MIR SINE MIR 21 100 -162 2168 112 0 13 chr5 39414326 39414630 -163670902 - AluSq SINE Alu -13 300 1 300 327 134 45 chr5 39414630 39414743 -163670789 + MIR SINE MIR 100 240 -22 220 325 0 36 chr5 39415169 39415252 -163670280 + MIR3 SINE MIR 127 206 -2 314 274 123 9 chr5 39416058 39416164 -163669368 + MIR SINE MIR 29 146 -116 1828 134 19 29 chr5 39416174 39416487 -163669045 - AluSx SINE Alu -1 311 2 1462 123 13 0 chr5 39416583 39416811 -163668721 - L1MA6 LINE L1 -5 6295 6065 245 273 50 0 chr5 39417140 39417239 -163668293 - MER20B DNA MER1_type -31 752 649 2048 87 25 0 chr5 39417838 39417964 -163667568 + AluSq SINE Alu 1 122 -190 327 49 0 0 chr5 39417964 39418005 -163667527 + (CA)n Simple_repeat Simple_repeat 2 42 0 2048 87 25 0 chr5 39418005 39418183 -163667349 + AluSq SINE Alu 122 312 0 215 204 0 37 chr5 39418190 39418311 -163667221 + GA-rich Low_complexity Low_complexity 1 116 0 643 101 0 50 chr5 39418620 39418719 -163666813 - AluSg/x SINE Alu -18 291 198 663 203 10 58 chr5 39418727 39418763 -163666769 - L1 LINE L1 -3758 2624 2588 2095 78 27 17 chr5 39418763 39419057 -163666475 - AluSc SINE Alu -12 297 1 663 203 10 58 chr5 39419057 39419243 -163666289 - L1 LINE L1 -3794 2588 2410 1437 89 0 0 chr5 39419249 39419440 -163666092 + AluYa5 SINE Alu 110 300 -11 454 130 0 0 chr5 39419440 39419509 -163666023 + Alu SINE Alu 234 302 -10 199 236 173 39 chr5 39419636 39419763 -163665769 + L2 LINE L2 735 878 -2436 1967 95 27 27 chr5 39420055 39420351 -163665181 + AluSq SINE Alu 1 296 -17 257 288 39 59 chr5 39420377 39420530 -163665002 + MIR SINE MIR 63 212 -50 2077 102 16 0 chr5 39420698 39421001 -163664531 + AluY SINE Alu 1 308 -3 221 280 40 0 chr5 39421774 39421849 -163663683 - MIR3 SINE MIR -6 202 125 398 195 228 34 chr5 39472079 39472228 -163613304 + MIR SINE MIR 21 198 -64 406 123 0 0 chr5 39472231 39472288 -163613244 - LTR16C LTR ERVL -5 486 430 715 181 9 0 chr5 39472527 39472643 -163612889 - FLAM_A SINE Alu -16 117 1 1002 219 17 0 chr5 39472644 39472822 -163612710 + MER58A DNA MER1_type 42 222 -2 368 259 0 0 chr5 39472833 39472914 -163612618 - LTR16C LTR ERVL -219 272 192 2177 127 0 3 chr5 39472915 39473214 -163612318 + AluSx SINE Alu 1 298 -14 3641 113 43 0 chr5 39473264 39473770 -163611762 + MER1A DNA MER1_type 2 529 0 497 131 48 0 chr5 39473939 39474023 -163611509 - AluSc SINE Alu -8 301 214 2032 78 0 0 chr5 39474023 39474265 -163611267 - AluSc SINE Alu -50 259 18 285 213 7 68 chr5 39474272 39474375 -163611157 - MER5B DNA MER1_type -45 133 45 1744 174 17 26 chr5 39474660 39475010 -163610522 - L1MB5 LINE L1 -8 6166 5820 1272 174 146 0 chr5 39475139 39475290 -163610242 - AluJb SINE Alu -19 283 155 228 35 0 0 chr5 39475290 39475319 -163610213 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1272 174 146 0 chr5 39475319 39475414 -163610118 - AluJb SINE Alu -147 155 1 684 200 8 8 chr5 39475730 39475860 -163609672 - FLAM_A SINE Alu 0 133 4 480 62 0 0 chr5 39476856 39476920 -163608612 + (TG)n Simple_repeat Simple_repeat 2 65 0 1994 111 36 4 chr5 39477803 39478082 -163607450 - AluSq SINE Alu -24 289 2 529 205 96 24 chr5 39478188 39478354 -163607178 - MER5B DNA MER1_type 0 178 1 306 0 0 0 chr5 39478470 39478504 -163607028 + (TC)n Simple_repeat Simple_repeat 1 34 0 2530 107 6 8 chr5 39478778 39479134 -163606398 + THE1A LTR MaLR 1 355 0 11653 96 8 9 chr5 39479134 39480717 -163604815 + THE1A-int LTR MaLR 1 1580 0 2394 118 8 8 chr5 39480717 39481072 -163604460 + THE1A LTR MaLR 1 355 0 358 295 9 9 chr5 39481213 39481325 -163604207 - LTR33A LTR ERVL -402 121 10 228 122 0 0 chr5 39481510 39481551 -163603981 + (CCA)n Simple_repeat Simple_repeat 2 42 0 2195 114 3 3 chr5 39481810 39482117 -163603415 + THE1-int LTR MaLR 929 1235 -345 556 125 0 0 chr5 39482115 39482195 -163603337 - THE1-int LTR MaLR -572 1008 929 * 182 298 0 0 chr5 39482493 39482550 -163602982 - L2 LINE L2 -61 3252 3196 2165 126 0 0 chr5 39482639 39482932 -163602600 + AluSx SINE Alu 3 295 -17 217 314 141 13 chr5 39483510 39483666 -163601866 - MIR3 SINE MIR -5 203 28 1778 135 14 17 chr5 39483671 39483960 -163601572 - AluSx SINE Alu -24 288 1 395 283 139 0 chr5 39483986 39484152 -163601380 - MER5A DNA MER1_type 0 189 1 482 295 108 0 chr5 39484510 39484735 -163600797 - L2 LINE L2 -292 3021 2774 31 76 0 0 chr5 39484735 39484801 -163600731 + AT_rich Low_complexity Low_complexity 1 66 0 301 266 18 28 chr5 39485067 39485176 -163600356 + MIR3 SINE MIR 86 193 -15 1955 137 0 38 chr5 39485829 39486142 -163599390 - AluJb SINE Alu -9 303 3 287 122 0 0 chr5 39486281 39486322 -163599210 + MADE1 DNA Mariner 40 80 0 321 118 106 12 chr5 39486327 39486412 -163599120 + MIR SINE MIR 106 198 -64 2715 135 28 6 chr5 39487056 39487803 -163597729 + L1MA4A LINE L1 4900 5665 -638 6059 159 22 25 chr5 39487806 39487959 -163597573 + L1MA3 LINE L1 4126 4278 -1868 1868 137 3 56 chr5 39487959 39488281 -163597251 + AluSx SINE Alu 3 307 -5 6059 159 22 25 chr5 39488281 39489337 -163596195 + L1MA3 LINE L1 4278 5332 -814 755 154 8 0 chr5 39489345 39489462 -163596070 + FLAM_C SINE Alu 9 126 -17 6358 98 20 37 chr5 39489471 39490410 -163595122 + L1MA3 LINE L1 5321 6243 -62 1827 176 0 3 chr5 39490410 39490700 -163594832 + AluJb SINE Alu 1 289 -23 6358 98 20 37 chr5 39490700 39490762 -163594770 + L1MA3 LINE L1 6243 6305 0 1990 142 16 7 chr5 39490772 39491075 -163594457 + AluSx SINE Alu 1 306 -6 2984 130 50 75 chr5 39491075 39491383 -163594149 + L1MA4A LINE L1 5661 5975 -328 2348 108 3 0 chr5 39491383 39491689 -163593843 + AluSx SINE Alu 1 307 -5 2984 130 50 75 chr5 39491689 39492032 -163593500 + L1MA4A LINE L1 5975 6297 -6 348 215 113 44 chr5 39492099 39492251 -163593281 - MER5A DNA MER1_type -1 177 9 584 121 0 0 chr5 39492299 39492382 -163593150 + AluJ/FLAM SINE Alu 2 84 -228 553 133 163 0 chr5 39492524 39492622 -163592910 + FLAM_C SINE Alu 4 117 -16 14500 38 3 2 chr5 39492742 39495265 -163590267 + L1PA5 LINE L1 3623 6148 -6 1075 170 6 0 chr5 39495274 39495445 -163590087 + LTR8 LTR ERV1 511 682 -9 279 270 12 20 chr5 39495745 39495993 -163589539 + CT-rich Low_complexity Low_complexity 1 246 0 609 185 0 0 chr5 39495997 39496116 -163589416 + T-rich Low_complexity Low_complexity 1 119 0 883 30 59 44 chr5 39496130 39496265 -163589267 + L1PA5 LINE L1 6018 6154 0 1063 177 16 0 chr5 39496463 39496655 -163588877 + L1M4 LINE L1 5484 5678 -500 3429 94 55 6 chr5 39496656 39497143 -163588389 - MER9 LTR ERVK 0 511 1 11310 103 7 3 chr5 39497152 39499003 -163586529 - HERVK9 LTR ERVK 0 8032 4155 6732 86 3 0 chr5 39499005 39499878 -163585654 - HERVK9 LTR ERVK -2012 3904 3029 * 9328 77 7 0 chr5 39499863 39501051 -163584481 - HERVK9 LTR ERVK -3297 2619 1424 4066 92 10 23 chr5 39501049 39501624 -163583908 - HERVK9 LTR ERVK -5348 568 1 * 3041 123 69 6 chr5 39501624 39502105 -163583427 - MER9 LTR ERVK 0 511 1 2481 189 44 19 chr5 39502106 39502647 -163582885 + L1MB7 LINE L1 5614 6168 -16 1929 152 9 19 chr5 39502783 39503098 -163582434 - AluJb SINE Alu 0 312 1 930 157 18 97 chr5 39503098 39503315 -163582217 - MER20 DNA MER1_type -19 200 1 313 267 155 9 chr5 39503325 39503441 -163582091 + L2 LINE L2 3181 3313 0 2233 115 3 0 chr5 39503567 39503862 -163581670 + AluSx SINE Alu 1 296 -16 203 203 419 0 chr5 39504699 39504773 -163580759 - MIR SINE MIR -118 144 40 237 182 13 26 chr5 39505594 39505671 -163579861 + (TA)n Simple_repeat Simple_repeat 1 76 0 1064 244 168 12 chr5 39506489 39506907 -163578625 - LTR33 LTR ERVL -2 519 37 182 283 50 0 chr5 39507019 39507079 -163578453 + L3b LINE CR1 1431 1493 -90 2497 71 0 3 chr5 39507103 39507413 -163578119 - AluY SINE Alu -2 309 1 457 192 67 129 chr5 39508317 39508510 -163577022 + L1ME3A LINE L1 5988 6168 -2 2216 121 0 16 chr5 39509020 39509327 -163576205 + AluSx SINE Alu 1 302 -10 483 313 26 36 chr5 39509470 39509665 -163575867 - MIR3 SINE MIR -6 202 10 201 288 0 45 chr5 39509678 39509744 -163575788 + MIR SINE MIR 32 94 -168 277 302 78 9 chr5 39510185 39510301 -163575231 + MIR SINE MIR 130 253 -9 304 333 77 19 chr5 39510554 39510710 -163574822 + MIR SINE MIR 23 187 -75 2047 133 3 10 chr5 39510993 39511293 -163574239 + AluSx SINE Alu 1 298 -14 315 49 0 0 chr5 39511699 39511740 -163573792 + (CA)n Simple_repeat Simple_repeat 2 42 0 365 294 17 8 chr5 39511740 39511859 -163573673 - MER5B DNA MER1_type -52 126 7 741 256 128 55 chr5 39512157 39512555 -163572977 - MARNA DNA Mariner -84 502 76 2299 92 0 10 chr5 39512912 39513218 -163572314 - AluSx SINE Alu -9 303 1 432 228 189 43 chr5 39513226 39513507 -163572025 - L1ME4a LINE L1 0 6121 5800 498 17 0 0 chr5 39514361 39514420 -163571112 + (CA)n Simple_repeat Simple_repeat 2 60 0 2530 50 7 0 chr5 39514565 39514866 -163570666 - AluY SINE Alu -8 303 1 2204 84 21 0 chr5 39516341 39516627 -163568905 + AluSx SINE Alu 1 292 -20 1463 169 31 4 chr5 39516668 39516922 -163568610 + AluJo SINE Alu 1 261 -51 969 179 113 15 chr5 39516959 39517154 -163568378 + MER20 DNA MER1_type 1 214 -5 800 11 0 0 chr5 39517159 39517248 -163568284 + 5S rRNA rRNA 2 90 -31 414 293 35 88 chr5 39517445 39517728 -163567804 - L2 LINE L2 -13 3300 3033 1885 144 0 31 chr5 39518147 39518468 -163567064 + AluJb SINE Alu 3 314 0 23 33 0 0 chr5 39518553 39518583 -163566949 + AT_rich Low_complexity Low_complexity 1 30 0 2364 99 0 3 chr5 39520437 39520749 -163564783 + AluSx SINE Alu 1 311 -1 606 290 116 68 chr5 39520804 39521709 -163563823 - L2 LINE L2 -48 3224 2273 762 205 165 5 chr5 39521735 39521935 -163563597 + MIR SINE MIR 15 246 -16 362 291 107 53 chr5 39521975 39522488 -163563044 - L2 LINE L2 -1075 2239 1608 1877 166 94 0 chr5 39523623 39523930 -163561602 - MER1B DNA MER1_type -1 336 1 3666 95 36 16 chr5 39524015 39524519 -163561013 + MER75 DNA T2_type 1 514 0 237 224 15 15 chr5 39524536 39524603 -163560929 - Charlie7 DNA MER1_type -34 2578 2512 291 171 92 0 chr5 39524618 39524694 -163560838 - Charlie7 DNA MER1_type -2470 142 60 2318 72 7 0 chr5 39527264 39527555 -163557977 + AluSp SINE Alu 1 293 -20 26 0 0 0 chr5 39529746 39529772 -163555760 + AT_rich Low_complexity Low_complexity 1 26 0 1969 102 0 42 chr5 39529843 39529979 -163555553 + AluSx SINE Alu 1 120 -192 2379 102 0 0 chr5 39529979 39530284 -163555248 + AluSc SINE Alu 1 305 -4 1969 102 0 42 chr5 39530284 39530431 -163555101 + AluSx SINE Alu 120 272 -40 1912 159 65 3 chr5 39530460 39530813 -163554719 + L1MA8 LINE L1 5917 6291 0 736 176 167 32 chr5 39530944 39531165 -163554367 + L1MD3 LINE L1 7745 7995 0 242 211 0 0 chr5 39531289 39531346 -163554186 - L1ME4a LINE L1 0 6121 6065 2217 94 13 23 chr5 39531866 39532173 -163553359 + AluY SINE Alu 1 304 -7 2289 235 58 20 chr5 39532176 39532842 -163552690 + L1ME1 LINE L1 5449 6299 -35 1069 218 77 2 chr5 39533914 39534264 -163551268 + Charlie4a DNA MER1_type 34 473 -35 890 136 0 0 chr5 39534630 39534780 -163550752 - FLAM_C SINE Alu 0 150 1 1512 132 25 107 chr5 39535175 39535494 -163550038 + AluYb8 SINE Alu 1 293 -25 364 361 56 25 chr5 39535944 39536268 -163549264 - L2 LINE L2 -457 2857 2524 50 92 0 0 chr5 39536957 39537098 -163548434 + AT_rich Low_complexity Low_complexity 1 141 0 291 114 0 0 chr5 39537108 39537152 -163548380 + (TA)n Simple_repeat Simple_repeat 1 44 0 2193 20 0 16 chr5 39537549 39537799 -163547733 - AluY SINE Alu 0 311 66 206 277 15 0 chr5 39538351 39538416 -163547116 + GA-rich Low_complexity Low_complexity 2 67 0 2447 81 0 10 chr5 39539539 39539849 -163545683 + AluSx SINE Alu 1 307 -5 1427 198 55 4 chr5 39539885 39540158 -163545374 + AluJo SINE Alu 2 288 -24 2419 182 51 25 chr5 39541801 39542290 -163543242 - MLT1D LTR MaLR -3 502 1 372 356 153 13 chr5 39542635 39542871 -163542661 - L2 LINE L2 -11 3261 2993 744 319 79 22 chr5 39543010 39543417 -163542115 - L2 LINE L2 -2368 946 517 388 222 28 67 chr5 39543807 39543987 -163541545 - L1ME4a LINE L1 -14 6107 5935 226 208 0 0 chr5 39543976 39544029 -163541503 - L1MC4 LINE L1 -1337 6705 6653 * 273 57 0 0 chr5 39544030 39544065 -163541467 + (CA)n Simple_repeat Simple_repeat 2 36 0 1951 111 0 0 chr5 39544077 39544330 -163541202 - AluSx SINE Alu -26 286 34 1754 168 7 0 chr5 39544875 39545155 -163540377 - AluJb SINE Alu -26 286 5 447 247 96 14 chr5 39548473 39548692 -163536840 - L1MC4 LINE L1 -1916 5892 5656 2390 117 54 20 chr5 39549424 39549775 -163535757 - THE1B LTR MaLR -1 363 1 1795 184 113 76 chr5 39549897 39550382 -163535150 + MLT1D LTR MaLR 3 505 0 253 307 136 34 chr5 39550466 39550554 -163534978 - L2 LINE L2 -32 3240 3144 776 286 78 37 chr5 39550630 39550952 -163534580 + L2 LINE L2 2804 3138 -175 2303 107 10 0 chr5 39550959 39551267 -163534265 - AluSq SINE Alu -2 311 1 497 313 16 0 chr5 39551290 39551418 -163534114 + MER91A DNA MER1_type 49 178 -18 458 318 12 18 chr5 39551452 39551622 -163533910 + L2 LINE L2 3145 3313 0 2223 104 7 3 chr5 39552123 39552420 -163533112 + AluSx SINE Alu 1 298 -14 2092 81 56 0 chr5 39554777 39555062 -163530470 - AluSx SINE Alu -8 304 4 1354 114 30 5 chr5 39555713 39555938 -163529594 + AluSg/x SINE Alu 77 306 0 22 35 0 0 chr5 39556042 39556071 -163529461 + AT_rich Low_complexity Low_complexity 1 29 0 891 237 76 0 chr5 39556171 39556382 -163529150 - MIR SINE MIR -8 254 28 1998 151 10 0 chr5 39556383 39556687 -163528845 - AluJb SINE Alu -3 309 3 1162 183 28 0 chr5 39556718 39556931 -163528601 - MER20 DNA MER1_type 0 219 1 1164 167 139 0 chr5 39556939 39557220 -163528312 - MER33 DNA MER1_type 0 324 5 2155 178 23 16 chr5 39557291 39557719 -163527813 - LTR3 LTR ERVK 0 432 2 1623 138 73 4 chr5 39557719 39557980 -163527552 - AluSx SINE Alu -33 279 1 284 154 39 0 chr5 39558550 39558602 -163526930 - MER66B LTR ERV1 -141 345 292 206 231 154 77 chr5 39558689 39558832 -163526700 - L2 LINE L2 0 3313 3160 244 265 48 24 chr5 39558931 39559014 -163526518 - L2 LINE L2 -220 3052 2968 293 111 0 0 chr5 39559270 39559315 -163526217 - LTR12 LTR ERV1 -318 396 352 198 325 38 12 chr5 39559881 39559961 -163525571 - MIR3 SINE MIR -15 193 112 478 291 133 24 chr5 39559973 39560199 -163525333 - MIR SINE MIR -2 260 12 1468 197 48 7 chr5 39560787 39561076 -163524456 + AluJb SINE Alu 1 301 -11 2377 83 0 7 chr5 39561150 39561450 -163524082 + AluSx SINE Alu 1 298 -14 450 187 0 0 chr5 39561450 39561541 -163523991 + (TA)n Simple_repeat Simple_repeat 1 91 0 420 20 0 0 chr5 39561532 39561581 -163523951 + (TG)n Simple_repeat Simple_repeat 2 50 0 * 438 135 0 0 chr5 39562282 39562356 -163523176 + L1MA10 LINE L1 6254 6327 -7 268 321 71 65 chr5 39562904 39563072 -163522460 - MIR SINE MIR -79 183 15 1022 274 87 27 chr5 39563249 39563811 -163521721 - L2 LINE L2 -4 3309 2698 1433 233 40 44 chr5 39563815 39564411 -163521121 + L1MC5 LINE L1 6923 7516 -445 395 209 73 37 chr5 39564470 39564661 -163520871 + L1MC5 LINE L1 7644 7841 -120 526 290 59 21 chr5 39564729 39564967 -163520565 - L2 LINE L2 -611 2703 2457 407 213 197 16 chr5 39565363 39565490 -163520042 - MIR SINE MIR 0 262 113 281 313 155 53 chr5 39566647 39566912 -163518620 - L2 LINE L2 0 3272 2981 860 154 0 0 chr5 39566929 39567059 -163518473 - FLAM_C SINE Alu -3 130 1 2434 124 8 3 chr5 39567616 39567978 -163517554 - THE1B LTR MaLR 0 364 1 2140 108 4 0 chr5 39568123 39568401 -163517131 + AluSx SINE Alu 1 279 -33 864 258 188 12 chr5 39570289 39570773 -163514759 + L1MC4a LINE L1 5598 6166 -1642 1403 113 16 61 chr5 39570988 39571235 -163514297 + MER46A DNA MER2_type 1 236 0 529 302 86 33 chr5 39572436 39572681 -163512851 - MIR SINE MIR 0 262 5 330 206 82 10 chr5 39573458 39573555 -163511977 - Charlie7 DNA MER1_type -2504 108 5 944 196 186 53 chr5 39574223 39574545 -163510987 + MLT1A1 LTR MaLR 1 365 0 2520 70 0 13 chr5 39574587 39574926 -163510606 - AluY SINE Alu 0 337 3 337 308 99 29 chr5 39575222 39575394 -163510138 + MER5A DNA MER1_type 4 187 -2 2233 101 7 0 chr5 39575760 39576047 -163509485 - AluSc SINE Alu -20 289 1 487 266 6 57 chr5 39577402 39577560 -163507972 - MER5A DNA MER1_type -22 167 18 198 0 0 0 chr5 39578151 39578173 -163507359 + (TGG)n Simple_repeat Simple_repeat 2 23 0 646 234 63 0 chr5 39578215 39578373 -163507159 - MER5B DNA MER1_type -10 168 1 486 251 64 61 chr5 39579485 39579665 -163505867 - MIR SINE MIR -48 214 31 186 313 31 0 chr5 39580324 39580388 -163505144 - L2 LINE L2 -1 3312 3247 338 241 13 13 chr5 39580403 39580482 -163505050 - MIR SINE MIR -28 234 156 619 212 130 7 chr5 39580482 39580628 -163504904 - FRAM SINE Alu -13 163 1 238 281 73 10 chr5 39580933 39581029 -163504503 - L1ME4a LINE L1 -30 6091 5990 283 267 96 14 chr5 39581069 39581215 -163504317 - L1ME4a LINE L1 -205 5916 5759 739 246 31 36 chr5 39582824 39583019 -163502513 - MIR SINE MIR -61 201 8 429 239 0 72 chr5 39583196 39583334 -163502198 - MIR SINE MIR -1 261 134 622 231 82 14 chr5 39583425 39583635 -163501897 - MIR SINE MIR -1 261 32 28 71 0 0 chr5 39584894 39584950 -163500582 + AT_rich Low_complexity Low_complexity 1 56 0 4012 206 83 66 chr5 39585193 39586752 -163498780 + L1MC/D LINE L1 3444 5028 -1118 1300 200 4 39 chr5 39586816 39587071 -163498461 + AluJo SINE Alu 43 288 -24 27 0 0 0 chr5 39587303 39587330 -163498202 + AT_rich Low_complexity Low_complexity 1 27 0 329 252 122 23 chr5 39587415 39587546 -163497986 + L1MC/D LINE L1 5673 5816 -1992 2352 104 0 0 chr5 39587558 39587865 -163497667 + AluSx SINE Alu 1 307 -5 228 242 33 22 chr5 39588609 39588700 -163496832 + L1M4 LINE L1 784 875 -5667 979 174 101 9 chr5 39588764 39588982 -163496550 + L1MCa LINE L1 19 256 -6170 695 156 78 0 chr5 39588984 39589151 -163496381 + L1MCa LINE L1 1800 1979 -4447 7486 196 55 72 chr5 39589153 39589354 -163496178 + L1MCa LINE L1 2092 2295 -4131 960 206 0 0 chr5 39589354 39589519 -163496013 + FRAM SINE Alu 1 165 -1 7486 196 55 72 chr5 39589519 39590051 -163495481 + L1MCa LINE L1 2295 2834 -3592 3127 79 56 7 chr5 39590051 39590483 -163495049 - MLT2A2 LTR ERVL 0 453 1 7486 196 55 72 chr5 39590483 39591566 -163493966 + L1MCa LINE L1 2834 3933 -2493 1551 72 5 0 chr5 39591566 39591773 -163493759 + L1PA7 LINE L1 5943 6150 -4 7486 196 55 72 chr5 39591773 39592186 -163493346 + L1MCa LINE L1 3933 4351 -2075 2418 109 0 0 chr5 39592186 39592499 -163493033 - AluSq SINE Alu 0 313 1 7486 196 55 72 chr5 39592499 39592995 -163492537 + L1MCa LINE L1 4351 4764 -1662 758 189 8 0 chr5 39592995 39593122 -163492410 + FLAM_A SINE Alu 1 128 -5 7486 196 55 72 chr5 39593122 39593408 -163492124 + L1MCa LINE L1 4764 5053 -1373 3685 152 33 9 chr5 39593408 39594097 -163491435 + L1PB4 LINE L1 5437 6142 -14 2241 66 0 24 chr5 39594492 39594781 -163490751 + AluSc SINE Alu 1 282 -27 1377 158 68 43 chr5 39595172 39595451 -163490081 + AluJo SINE Alu 1 286 -26 2198 102 14 0 chr5 39596111 39596404 -163489128 + AluSx SINE Alu 1 297 -15 197 291 152 0 chr5 39597171 39597250 -163488282 + L2 LINE L2 3221 3311 -2 1965 172 0 0 chr5 39597335 39597637 -163487895 - AluJo SINE Alu -10 302 1 2268 103 0 13 chr5 39597737 39598047 -163487485 + AluSx SINE Alu 1 306 -6 2303 105 0 0 chr5 39599385 39599680 -163485852 - AluSc SINE Alu -14 295 1 846 136 0 0 chr5 39600075 39600225 -163485307 + FLAM_C SINE Alu 1 150 0 942 218 77 2 chr5 39600591 39600941 -163484591 - Charlie4a DNA MER1_type -35 473 34 313 304 24 8 chr5 39602012 39602033 -163483499 - L1MA10 LINE L1 -35 6299 6279 2011 229 62 23 chr5 39602033 39602678 -163482854 - L1ME1 LINE L1 -48 6118 5449 937 131 38 12 chr5 39602681 39602841 -163482691 - AluSq SINE Alu -5 308 145 441 0 0 0 chr5 39603034 39603083 -163482449 + (CA)n Simple_repeat Simple_repeat 2 50 0 2275 106 0 13 chr5 39603702 39604014 -163481518 + AluSc SINE Alu 1 308 -1 2214 93 14 0 chr5 39604632 39604921 -163480611 - AluSx SINE Alu -15 297 5 1986 101 49 3 chr5 39605754 39606040 -163479492 - AluSq SINE Alu -14 299 1 546 237 34 8 chr5 39606349 39606467 -163479065 + L2 LINE L2 3188 3308 -5 369 0 0 0 chr5 39606605 39606646 -163478886 + (CA)n Simple_repeat Simple_repeat 2 42 0 1876 151 16 16 chr5 39606743 39607055 -163478477 + AluJb SINE Alu 1 312 0 5478 162 46 18 chr5 39607509 39608504 -163477028 + L1 LINE L1 3239 4274 -1872 306 50 0 0 chr5 39608504 39608544 -163476988 + (CA)n Simple_repeat Simple_repeat 1 40 0 5478 162 46 18 chr5 39608544 39608744 -163476788 + L1 LINE L1 4274 4467 -1679 901 218 76 111 chr5 39609151 39609444 -163476088 + L1MC4 LINE L1 7537 7806 -236 1484 189 63 14 chr5 39609444 39609567 -163475965 + AluJb SINE Alu 1 117 -195 189 0 0 0 chr5 39609567 39609588 -163475944 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 1484 189 63 14 chr5 39609588 39609750 -163475782 + AluJb SINE Alu 117 300 -12 901 218 76 111 chr5 39609750 39609980 -163475552 + L1MC4 LINE L1 7806 8042 0 639 290 11 11 chr5 39609993 39610176 -163475356 + MIR SINE MIR 20 202 -60 207 0 0 0 chr5 39610350 39610373 -163475159 + (A)n Simple_repeat Simple_repeat 1 23 0 222 118 0 0 chr5 39610598 39610632 -163474900 + (TATG)n Simple_repeat Simple_repeat 2 35 0 352 374 8 0 chr5 39611527 39611650 -163473882 + MER5A DNA MER1_type 63 186 -3 1376 162 4 4 chr5 39611958 39612193 -163473339 + MLT1A1 LTR MaLR 12 246 -119 245 337 63 44 chr5 39613720 39613817 -163471715 - MIR SINE MIR -2 260 166 2158 80 0 0 chr5 39613817 39614091 -163471441 - AluSc SINE Alu -1 308 35 245 337 63 44 chr5 39614091 39614151 -163471381 - MIR SINE MIR -96 166 109 2200 123 10 0 chr5 39614151 39614453 -163471079 + AluJb SINE Alu 1 305 -7 245 337 63 44 chr5 39614453 39614546 -163470986 - MIR SINE MIR -153 109 4 317 325 88 9 chr5 39614613 39614727 -163470805 - MIR SINE MIR -118 144 22 542 232 69 73 chr5 39614749 39614768 -163470764 + MIR SINE MIR 22 40 -222 553 219 50 8 chr5 39614768 39614887 -163470645 - FLAM_A SINE Alu -8 125 2 542 232 69 73 chr5 39614887 39615100 -163470432 + MIR SINE MIR 40 253 -9 734 274 51 8 chr5 39615221 39615455 -163470077 + MIR SINE MIR 12 255 -7 856 339 78 42 chr5 39616669 39617415 -163468117 - L2 LINE L2 -263 3009 2243 197 254 16 16 chr5 39617631 39617694 -163467838 + MIR SINE MIR 199 261 -1 606 301 79 94 chr5 39617843 39618437 -163467095 + L1MC4a LINE L1 5326 5910 -1898 969 175 88 28 chr5 39618631 39618848 -163466684 + MIR SINE MIR 12 241 -21 423 141 0 0 chr5 39618855 39618933 -163466599 + (ATG)n Simple_repeat Simple_repeat 2 79 0 397 229 0 76 chr5 39619052 39619157 -163466375 - L3 LINE CR1 -100 1477 1381 753 260 85 30 chr5 39619162 39619397 -163466135 + MIR SINE MIR 12 259 -3 254 240 190 20 chr5 39620395 39620495 -163465037 + MIR SINE MIR 19 135 -73 731 316 76 40 chr5 39620497 39620867 -163464665 - L2 LINE L2 0 3272 2890 307 183 0 0 chr5 39621020 39621080 -163464452 + MER103 DNA DNA 33 92 -74 2005 123 17 3 chr5 39621089 39621389 -163464143 + AluSx SINE Alu 1 304 -8 886 122 0 36 chr5 39621470 39621609 -163463923 - AluJo SINE Alu -178 134 1 806 195 130 35 chr5 39621931 39622162 -163463370 + MIR SINE MIR 10 262 0 2000 117 7 11 chr5 39623594 39623906 -163461626 + AluSc SINE Alu 1 311 0 1409 145 4 8 chr5 39624097 39624338 -163461194 - Tigger2 DNA MER2_type 0 2718 2479 943 166 11 11 chr5 39624339 39624514 -163461018 + AluJb SINE Alu 137 311 -1 3951 147 48 8 chr5 39624585 39625301 -163460231 - Tigger2 DNA MER2_type -1974 744 1 217 268 197 39 chr5 39625436 39625466 -163460066 - MIR3 SINE MIR -58 150 126 2405 96 3 0 chr5 39625466 39625778 -163459754 + AluSp SINE Alu 1 313 0 217 268 197 39 chr5 39625778 39625874 -163459658 - MIR3 SINE MIR -82 126 4 1967 116 32 3 chr5 39626127 39626411 -163459121 + AluSq SINE Alu 1 292 -21 1940 116 16 3 chr5 39627309 39627612 -163457920 - L1MC1 LINE L1 -18 6315 6009 1725 148 30 39 chr5 39627950 39628255 -163457277 - AluJo SINE Alu -10 302 1 2333 102 0 0 chr5 39628299 39628594 -163456938 + AluSc SINE Alu 1 295 -14 2268 103 0 13 chr5 39629932 39630242 -163455290 - AluSx SINE Alu -6 306 1 1965 172 0 0 chr5 39630342 39630644 -163454888 + AluJo SINE Alu 1 302 -10 197 291 152 0 chr5 39630729 39630808 -163454724 - L2 LINE L2 -2 3311 3221 231 254 40 79 chr5 39631274 39631400 -163454132 + MER20 DNA MER1_type 80 200 -19 22 0 0 0 chr5 39631508 39631530 -163454002 + AT_rich Low_complexity Low_complexity 1 22 0 525 160 319 14 chr5 39631890 39632034 -163453498 - MER5A DNA MER1_type 0 189 2 2345 78 24 3 chr5 39632157 39632453 -163453079 - AluSp SINE Alu -11 302 1 313 324 199 12 chr5 39633919 39634246 -163451286 + L2 LINE L2 2061 2448 -866 2281 119 0 0 chr5 39634404 39634707 -163450825 - AluSx SINE Alu -3 309 7 231 333 0 13 chr5 39635066 39635141 -163450391 + L2 LINE L2 3238 3311 -2 260 383 62 8 chr5 39635300 39635428 -163450104 + MIR3 SINE MIR 38 172 -36 24 0 0 0 chr5 39636665 39636689 -163448843 + AT_rich Low_complexity Low_complexity 1 24 0 2203 104 0 3 chr5 39636705 39636992 -163448540 + AluSq SINE Alu 3 288 -25 283 269 64 39 chr5 39637057 39637135 -163448397 + MIR SINE MIR 24 103 -105 577 172 0 78 chr5 39637878 39638006 -163447526 - FLAM_A SINE Alu -11 122 5 808 258 60 20 chr5 39638189 39638441 -163447091 + MIR SINE MIR 1 262 0 22 35 0 0 chr5 39638535 39638564 -163446968 + AT_rich Low_complexity Low_complexity 1 29 0 242 285 108 39 chr5 39639017 39639147 -163446385 + MIR SINE MIR 14 152 -110 253 357 24 12 chr5 39640644 39640728 -163444804 + L2 LINE L2 3170 3254 -18 2252 81 0 26 chr5 39641337 39641644 -163443888 + AluSg SINE Alu 1 299 -11 1377 158 68 43 chr5 39642015 39642294 -163443238 + AluJo SINE Alu 1 286 -26 1903 121 3 75 chr5 39642954 39643286 -163442246 + AluJb SINE Alu 1 308 -4 330 113 0 70 chr5 39643371 39643442 -163442090 - L1PA16 LINE L1 0 6166 6101 227 304 112 16 chr5 39644044 39644169 -163441363 + L2 LINE L2 3158 3294 -19 383 280 231 54 chr5 39644455 39644805 -163440727 - L2 LINE L2 -13 3300 2889 1528 167 95 8 chr5 39644862 39645126 -163440406 - AluSx SINE Alu -25 287 1 2237 99 3 7 chr5 39645609 39645913 -163439619 + AluSp SINE Alu 1 303 -10 2195 102 6 16 chr5 39647249 39647563 -163437969 - AluSq SINE Alu -2 311 1 569 218 24 8 chr5 39647566 39647690 -163437842 - FLAM_A SINE Alu -6 127 2 2406 81 7 0 chr5 39650012 39650320 -163435212 - AluSp SINE Alu -3 310 1 1814 139 21 3 chr5 39651748 39652036 -163433496 - AluJo SINE Alu -19 293 1 271 313 48 62 chr5 39652989 39653135 -163432397 + MIR SINE MIR 8 149 -59 419 294 142 74 chr5 39653172 39653639 -163431893 + L1M2 LINE L1 496 930 -5919 222 37 0 0 chr5 39653639 39653666 -163431866 + (CCG)n Simple_repeat Simple_repeat 1 27 0 419 294 142 74 chr5 39653666 39653971 -163431561 + L1M2 LINE L1 930 1407 -5442 2401 74 0 7 chr5 39656124 39656422 -163429110 + AluSc SINE Alu 1 296 -13 959 212 132 99 chr5 39656471 39656995 -163428537 - MLT1F LTR MaLR 0 542 2 211 53 26 26 chr5 39657251 39657289 -163428243 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 1786 130 0 27 chr5 39657302 39657564 -163427968 - AluSx SINE Alu -57 255 1 2097 141 0 7 chr5 39658210 39658516 -163427016 - AluSx SINE Alu -8 304 1 425 351 48 19 chr5 39659072 39659280 -163426252 + MIR SINE MIR 2 215 -47 1699 161 45 3 chr5 39660308 39660594 -163424938 - AluJo SINE Alu -14 298 1 2294 114 0 0 chr5 39660725 39661031 -163424501 - AluSq SINE Alu -2 311 6 1979 122 11 11 chr5 39661796 39662083 -163423449 - AluSx SINE Alu -25 287 1 584 248 224 14 chr5 39662174 39662388 -163423144 - MIR SINE MIR -2 260 2 24 0 0 0 chr5 39662996 39663020 -163422512 + AT_rich Low_complexity Low_complexity 1 24 0 337 198 99 0 chr5 39663021 39663122 -163422410 - Charlie8 DNA MER1_type -2251 166 56 2763 13 0 0 chr5 39663247 39663550 -163421982 - AluYb8 SINE Alu -15 303 1 198 0 0 0 chr5 39665178 39665200 -163420332 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 1453 193 0 82 chr5 39665200 39665506 -163420026 - AluJb SINE Alu -29 283 3 2396 106 0 0 chr5 39665541 39665852 -163419680 - AluSx SINE Alu -1 311 1 1711 252 113 65 chr5 39666551 39666773 -163418759 - L1MC4 LINE L1 0 8042 7832 2447 81 3 0 chr5 39666773 39667070 -163418462 + AluSp SINE Alu 2 299 -14 1711 252 113 65 chr5 39667070 39667960 -163417572 - L1MC4 LINE L1 -210 7832 6876 2113 131 0 0 chr5 39669073 39669363 -163416169 - AluSx SINE Alu -22 290 1 880 244 105 54 chr5 39671402 39672025 -163413507 - L1M4 LINE L1 -970 5176 4522 2539 245 107 36 chr5 39672041 39672570 -163412962 + L1MC4 LINE L1 6448 6938 -1104 2298 90 7 0 chr5 39672570 39672860 -163412672 + AluSg SINE Alu 1 292 -18 2539 245 107 36 chr5 39672860 39673647 -163411885 + L1MC4 LINE L1 6938 7949 -93 204 293 0 0 chr5 39674432 39674490 -163411042 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 260 262 144 10 chr5 39675272 39675373 -163410159 - MIR SINE MIR -61 147 39 2075 114 10 3 chr5 39675511 39675809 -163409723 - AluSg SINE Alu -10 300 1 273 260 125 21 chr5 39675877 39675973 -163409559 - MIR3 SINE MIR -48 160 55 243 0 0 0 chr5 39676109 39676136 -163409396 + (TG)n Simple_repeat Simple_repeat 2 28 0 2269 100 0 3 chr5 39676854 39677144 -163408388 + AluSg SINE Alu 1 289 -21 1898 149 10 7 chr5 39677251 39677547 -163407985 - AluSx SINE Alu -14 298 2 24 0 0 0 chr5 39679162 39679186 -163406346 + AT_rich Low_complexity Low_complexity 1 24 0 2829 10 0 0 chr5 39679757 39680065 -163405467 + AluYa5 SINE Alu 1 308 -3 269 339 72 33 chr5 39681934 39682114 -163403418 - MIR3 SINE MIR -6 202 16 477 267 54 70 chr5 39682121 39682379 -163403153 + L1ME3A LINE L1 4644 4897 -1249 317 266 161 12 chr5 39682408 39682656 -163402876 + L1ME3A LINE L1 4993 5277 -869 1241 133 258 24 chr5 39682709 39683046 -163402486 - Charlie1 DNA MER1_type 0 2761 2346 324 164 60 0 chr5 39683044 39683111 -163402421 - Charlie1 DNA MER1_type -2690 71 1 * 265 273 188 0 chr5 39683229 39683394 -163402138 + L1ME3A LINE L1 5461 5656 -506 345 252 107 0 chr5 39683400 39683503 -163402029 + MER5A DNA MER1_type 7 120 -69 419 259 97 16 chr5 39683550 39683796 -163401736 + L1ME3A LINE L1 5653 5925 -237 22 0 0 0 chr5 39683928 39683950 -163401582 + AT_rich Low_complexity Low_complexity 1 22 0 772 251 236 10 chr5 39684156 39684571 -163400961 + MLT1J LTR MaLR 3 511 0 362 292 167 12 chr5 39684659 39684827 -163400705 + MIR SINE MIR 54 247 -15 1731 135 53 11 chr5 39684959 39685241 -163400291 - AluSx SINE Alu -18 294 1 301 304 65 14 chr5 39685663 39685801 -163399731 + L3 LINE CR1 1355 1499 -78 1990 141 10 16 chr5 39685900 39686204 -163399328 - AluSx SINE Alu -10 302 1 8232 195 36 64 chr5 39686204 39686500 -163399032 - L1 LINE L1 -3104 3744 3441 7385 135 24 18 chr5 39686500 39686582 -163398950 - HSMAR2 DNA Mariner -2 1300 1220 1946 119 32 0 chr5 39686582 39686867 -163398665 + AluSx SINE Alu 1 294 -18 7385 135 24 18 chr5 39686867 39688076 -163397456 - HSMAR2 DNA Mariner -82 1220 1 8232 195 36 64 chr5 39688076 39688223 -163397309 - L1 LINE L1 -3407 3441 3291 1842 183 10 0 chr5 39688223 39688529 -163397003 - AluJo SINE Alu -3 309 1 8232 195 36 64 chr5 39688529 39688858 -163396674 - L1 LINE L1 -3557 3291 2954 1785 199 0 0 chr5 39688858 39689155 -163396377 - AluJo SINE Alu -15 297 1 8232 195 36 64 chr5 39689155 39689295 -163396237 - L1 LINE L1 -3894 2954 2811 219 69 0 0 chr5 39689295 39689324 -163396208 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 1980 155 0 0 chr5 39689324 39689615 -163395917 - AluSx SINE Alu -21 291 1 8232 195 36 64 chr5 39689615 39691349 -163394183 - L1 LINE L1 -4036 2812 1187 3909 128 12 94 chr5 39691349 39691910 -163393622 + LTR8 LTR ERV1 1 486 -205 2471 70 0 10 chr5 39691910 39692223 -163393309 + AluY SINE Alu 2 311 0 3909 128 12 94 chr5 39692223 39692414 -163393118 + LTR8 LTR ERV1 486 691 0 8232 195 36 64 chr5 39692414 39692738 -163392794 - L1 LINE L1 -5661 1187 855 410 230 23 0 chr5 39693184 39693271 -163392261 - MER115 DNA AcHobo -447 246 158 2325 201 29 10 chr5 39693342 39693859 -163391673 - MER34 LTR ERV1 -4 538 12 216 158 0 0 chr5 39694635 39694673 -163390859 + GA-rich Low_complexity Low_complexity 2 39 0 281 287 70 23 chr5 39694792 39694921 -163390611 - MLT1L LTR MaLR -434 181 47 584 223 27 80 chr5 39695386 39695495 -163390037 + MER45A DNA AcHobo 1 97 -1484 4468 36 0 0 chr5 39695495 39696027 -163389505 - L1PA5 LINE L1 -2 6152 5621 584 223 27 80 chr5 39696027 39696105 -163389427 + MER45A DNA AcHobo 97 178 0 2767 64 0 43 chr5 39696242 39696433 -163389099 - L1PB1 LINE L1 0 6151 5984 2245 123 0 0 chr5 39696433 39696734 -163388798 - AluSx SINE Alu -11 301 1 2767 64 0 43 chr5 39696734 39696935 -163388597 - L1PB1 LINE L1 -167 5984 5776 21 0 0 0 chr5 39697373 39697394 -163388138 + AT_rich Low_complexity Low_complexity 1 21 0 369 332 123 23 chr5 39697415 39697635 -163387897 - L2 LINE L2 0 3272 3031 2385 101 0 0 chr5 39697724 39698030 -163387502 - AluSq SINE Alu -7 306 1 4037 185 23 26 chr5 39698036 39698128 -163387404 - L1MB8 LINE L1 -6 6172 6081 2300 105 3 13 chr5 39698128 39698441 -163387091 + AluSx SINE Alu 1 310 -2 4037 185 23 26 chr5 39698441 39699391 -163386141 - L1MB8 LINE L1 -97 6081 5136 252 365 116 19 chr5 39699437 39700041 -163385491 - L2 LINE L2 -337 2977 2304 1090 243 148 5 chr5 39700043 39700414 -163385118 - LTR16A LTR ERVL 0 450 27 199 316 13 82 chr5 39700447 39700605 -163384927 - L2 LINE L2 -1015 2299 2153 670 273 57 13 chr5 39700622 39700849 -163384683 - MLT1L LTR MaLR -11 604 368 1967 212 87 87 chr5 39700939 39701714 -163383818 - MER21B LTR ERV1 -69 794 20 475 196 0 22 chr5 39701737 39701829 -163383703 - MER21B LTR ERV1 -773 90 1 341 211 193 25 chr5 39701953 39702114 -163383418 - MLT1L LTR MaLR -427 188 1 317 320 56 60 chr5 39702139 39702423 -163383109 - L2 LINE L2 -1230 2084 1802 802 225 25 21 chr5 39702484 39702720 -163382812 + L1ME1 LINE L1 5930 6166 0 2185 123 3 3 chr5 39703027 39703327 -163382205 - AluSx SINE Alu -12 300 1 3532 130 7 0 chr5 39703539 39704114 -163381418 + L1MA4 LINE L1 5442 6020 -280 3236 161 33 0 chr5 39704209 39704748 -163380784 + MER41D LTR ERV1 1 557 0 1586 88 23 0 chr5 39705103 39705318 -163380214 + L1PA16 LINE L1 5935 6154 -12 1545 78 0 0 chr5 39705320 39705532 -163380000 - AluY SINE Alu 0 306 95 8348 66 3 7 chr5 39705532 39706607 -163378925 - MER11C LTR ERVK -1 1070 1 737 129 0 0 chr5 39706607 39706708 -163378824 - AluY SINE Alu -210 101 1 187 269 65 54 chr5 39706786 39706879 -163378653 - L2 LINE L2 -17 3296 3203 1569 82 26 39 chr5 39707160 39707393 -163378139 - MER30 DNA MER1_type 0 230 1 268 241 19 0 chr5 39707397 39707451 -163378081 - MIR3 SINE MIR -48 160 106 33 56 0 0 chr5 39707702 39707756 -163377776 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr5 39707830 39707853 -163377679 + AT_rich Low_complexity Low_complexity 1 23 0 4981 159 36 32 chr5 39707857 39708168 -163377364 - L1MB4 LINE L1 -29 6151 5843 2810 16 0 6 chr5 39708168 39708480 -163377052 - AluYb8 SINE Alu -8 310 1 4981 159 36 32 chr5 39708480 39709092 -163376440 - L1MB4 LINE L1 -337 5843 5227 2096 123 7 0 chr5 39709092 39709384 -163376148 - AluSp SINE Alu -19 294 1 4981 159 36 32 chr5 39709384 39709910 -163375622 - L1MB4 LINE L1 -953 5227 4705 637 306 53 53 chr5 39710801 39711087 -163374445 - L2 LINE L2 -980 2334 2046 3277 176 117 12 chr5 39711087 39711745 -163373787 - LTR8A LTR ERV1 0 727 1 637 306 53 53 chr5 39711745 39711925 -163373607 - L2 LINE L2 -1267 2047 1868 2046 138 3 0 chr5 39712136 39712427 -163373105 + AluSx SINE Alu 1 292 -20 1099 155 57 5 chr5 39713031 39713223 -163372309 + Tigger3b DNA MER2_type 1 202 -1029 5039 109 31 32 chr5 39713223 39713879 -163371653 + MER4E LTR ERV1 1 657 -122 4367 115 1 65 chr5 39713879 39714436 -163371096 + MER41B LTR ERV1 1 509 -126 2217 116 3 10 chr5 39714436 39714747 -163370785 - AluSx SINE Alu -3 309 1 4367 115 1 65 chr5 39714747 39714867 -163370665 + MER41B LTR ERV1 509 635 0 5039 109 31 32 chr5 39714867 39714990 -163370542 + MER4E LTR ERV1 657 779 0 4815 111 41 49 chr5 39714990 39715838 -163369694 + Tigger3b DNA MER2_type 201 1041 -190 3022 116 45 4 chr5 39715838 39716305 -163369227 + LTR19A LTR ERV1 1 486 0 1082 184 0 0 chr5 39716305 39716479 -163369053 + Tigger3b DNA MER2_type 1037 1210 -22 227 264 40 11 chr5 39717536 39717710 -163367822 + (TTA)n Simple_repeat Simple_repeat 1 179 0 2006 122 31 7 chr5 39717758 39718052 -163367480 + AluSx SINE Alu 1 301 -11 490 294 200 40 chr5 39719070 39720048 -163365484 - L2 LINE L2 -455 2859 1725 386 309 40 63 chr5 39720058 39720282 -163365250 - MIR3 SINE MIR -36 226 9 186 360 30 10 chr5 39720353 39720453 -163365079 - L2 LINE L2 -528 2786 2685 336 198 69 60 chr5 39720552 39720668 -163364864 - MER113 DNA MER1_type? -83 438 322 486 71 200 0 chr5 39720680 39720750 -163364782 - AluSg/x SINE Alu -20 290 207 1423 110 0 0 chr5 39721049 39721231 -163364301 - AluSx SINE Alu -129 183 2 897 236 86 30 chr5 39721240 39721448 -163364084 - MER113 DNA MER1_type? -198 323 91 2442 71 0 16 chr5 39721448 39721758 -163363774 + AluY SINE Alu 1 305 -6 897 236 86 30 chr5 39721758 39721850 -163363682 - MER113 DNA MER1_type? -430 91 6 637 292 66 25 chr5 39722012 39722481 -163363051 - MLT1L LTR MaLR -8 607 97 320 329 187 35 chr5 39722905 39724318 -163361214 + L2 LINE L2 462 2144 -1170 2149 106 3 3 chr5 39724318 39724635 -163360897 - AluSx SINE Alu 0 317 1 320 329 187 35 chr5 39724635 39724803 -163360729 + L2 LINE L2 2144 2285 -1029 2181 126 12 0 chr5 39724822 39725147 -163360385 + MER47A DNA MER2_type 38 366 0 894 222 141 0 chr5 39725405 39725603 -163359929 + MIR SINE MIR 21 246 -16 212 387 120 20 chr5 39725812 39725902 -163359630 + L2 LINE L2 3102 3182 -90 558 113 0 0 chr5 39725902 39725982 -163359550 - MADE1 DNA Mariner 0 80 1 212 387 120 20 chr5 39725982 39726041 -163359491 + L2 LINE L2 3182 3266 -6 1485 192 105 19 chr5 39726409 39726732 -163358800 + MLT1A1 LTR MaLR 1 351 -14 445 305 23 15 chr5 39728546 39728677 -163356855 + MER5B DNA MER1_type 15 146 -32 2131 103 14 0 chr5 39729172 39729479 -163356053 - AluSx SINE Alu 0 311 1 22 35 0 0 chr5 39729810 39729839 -163355693 + AT_rich Low_complexity Low_complexity 1 29 0 811 263 144 41 chr5 39729890 39730253 -163355279 - L1MC4a LINE L1 -95 6026 5603 2517 121 100 5 chr5 39730253 39730642 -163354890 - MSTB LTR MaLR 0 426 1 811 263 144 41 chr5 39730642 39730742 -163354790 - L1MC4a LINE L1 -518 5603 5515 2185 175 3 14 chr5 39730957 39731312 -163354220 + MLT1A1 LTR MaLR 11 361 -4 244 267 0 0 chr5 39731581 39731626 -163353906 - MIR SINE MIR -195 67 23 2498 145 25 37 chr5 39731690 39732125 -163353407 + MSTB1 LTR MaLR 1 430 -2 1938 151 0 3 chr5 39733268 39733553 -163351979 + AluSx SINE Alu 1 284 -28 2166 104 0 23 chr5 39734352 39734659 -163350873 + AluSg SINE Alu 1 300 -10 2158 128 0 0 chr5 39735146 39735435 -163350097 + AluSx SINE Alu 15 303 -9 27 0 0 0 chr5 39735546 39735573 -163349959 + AT_rich Low_complexity Low_complexity 1 27 0 2223 91 19 3 chr5 39735616 39735870 -163349662 + L1PB3 LINE L1 5534 5795 -359 324 0 0 0 chr5 39735870 39735906 -163349626 + (CA)n Simple_repeat Simple_repeat 2 37 0 2223 91 19 3 chr5 39735906 39735960 -163349572 + L1PB3 LINE L1 5795 5847 -307 1610 95 95 0 chr5 39735966 39736188 -163349344 + L1PB3 LINE L1 5912 6154 0 273 128 0 0 chr5 39736188 39736235 -163349297 + (TA)n Simple_repeat Simple_repeat 1 47 0 763 174 59 42 chr5 39737132 39737328 -163348204 + MLT1B LTR MaLR 1 185 -189 2222 96 14 3 chr5 39737456 39737749 -163347783 + AluSx SINE Alu 5 300 -12 2290 103 0 3 chr5 39738124 39738424 -163347108 + AluSg SINE Alu 5 303 -7 225 311 0 44 chr5 39738562 39738652 -163346880 + MIR SINE MIR 69 154 -108 655 320 112 3 chr5 39738983 39739286 -163346246 + L2 LINE L2 2935 3270 -2 186 176 0 0 chr5 39739377 39739428 -163346104 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 2392 101 0 0 chr5 39739515 39739821 -163345711 + AluSx SINE Alu 1 306 -6 2251 216 68 44 chr5 39740174 39740702 -163344830 + MER87 LTR ERV1 1 541 0 279 361 21 0 chr5 39741186 39741283 -163344249 + MIR SINE MIR 46 144 -118 1821 129 46 26 chr5 39741284 39741586 -163343946 + THE1B LTR MaLR 1 308 -56 36153 37 1 0 chr5 39741586 39746684 -163338848 + L1PA3 LINE L1 1053 6155 0 204 125 0 0 chr5 39746695 39746727 -163338805 + (A)n Simple_repeat Simple_repeat 1 32 0 231 114 0 0 chr5 39747113 39747148 -163338384 + (A)n Simple_repeat Simple_repeat 1 35 0 516 83 0 14 chr5 39747148 39747220 -163338312 + THE1B LTR MaLR 304 374 -1 324 253 0 13 chr5 39747247 39747326 -163338206 + MIR SINE MIR 166 243 -19 1914 153 3 0 chr5 39747809 39748140 -163337392 - AluSx SINE Alu 0 332 1 374 281 102 83 chr5 39748384 39748634 -163336898 - MARNA DNA Mariner -9 577 333 2236 100 3 7 chr5 39748634 39748943 -163336589 + AluSp SINE Alu 1 308 -5 374 281 102 83 chr5 39748943 39749041 -163336491 - MARNA DNA Mariner -253 333 238 2158 131 0 10 chr5 39749041 39749355 -163336177 + AluSx SINE Alu 1 311 -1 374 281 102 83 chr5 39749355 39749535 -163335997 - MARNA DNA Mariner -348 238 38 254 343 88 22 chr5 39750977 39751158 -163334374 + L2 LINE L2 3065 3257 -15 180 0 0 0 chr5 39751236 39751256 -163334276 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 599 293 112 53 chr5 39751305 39751759 -163333773 - L1MEd LINE L1 -5099 1020 540 364 304 133 59 chr5 39751907 39752246 -163333286 - L1MEd LINE L1 -5733 386 23 612 0 0 0 chr5 39752506 39752574 -163332958 + (GA)n Simple_repeat Simple_repeat 1 68 0 2481 83 0 0 chr5 39754179 39754492 -163331040 + AluSq SINE Alu 1 313 0 310 277 149 0 chr5 39754920 39755026 -163330506 - MIR SINE MIR -67 141 36 215 211 19 19 chr5 39755125 39755177 -163330355 + MIR SINE MIR 22 73 -135 892 154 11 75 chr5 39755848 39755897 -163329635 - FRAM SINE Alu -136 40 145 2207 129 3 0 chr5 39755897 39756206 -163329326 - AluSx SINE Alu -2 310 1 892 154 11 75 chr5 39756206 39756344 -163329188 - FRAM SINE Alu -30 146 1 440 248 51 36 chr5 39757782 39757919 -163327613 - MARNA DNA Mariner -28 558 420 235 327 40 0 chr5 39758009 39758110 -163327422 + MARNA DNA Mariner 284 388 -198 666 62 0 0 chr5 39758116 39758196 -163327336 + MADE1 DNA Mariner 1 80 0 2427 92 0 6 chr5 39759749 39760063 -163325469 + AluSx SINE Alu 1 312 0 240 150 0 0 chr5 39760286 39760326 -163325206 - MIR SINE MIR -40 222 183 475 353 27 5 chr5 39761118 39761305 -163324227 + L3 LINE CR1 1339 1529 -48 276 100 0 0 chr5 39761455 39761495 -163324037 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 1141 175 6 0 chr5 39761499 39761670 -163323862 - FAM SINE Alu -3 172 1 471 241 90 0 chr5 39761976 39762121 -163323411 + MER103 DNA DNA 8 165 -1 441 116 0 0 chr5 39764018 39764087 -163321445 + (GA)n Simple_repeat Simple_repeat 2 70 0 252 0 0 0 chr5 39765178 39765206 -163320326 + (A)n Simple_repeat Simple_repeat 1 28 0 406 279 75 80 chr5 39765250 39765451 -163320081 - MIR3 SINE MIR -7 201 2 191 170 43 21 chr5 39765504 39765551 -163319981 - MIR3 SINE MIR 0 208 161 264 125 47 16 chr5 39766291 39766355 -163319177 + GA-rich Low_complexity Low_complexity 3 68 0 366 171 0 0 chr5 39766669 39766739 -163318793 + (TG)n Simple_repeat Simple_repeat 2 71 0 1031 201 0 0 chr5 39767498 39767662 -163317870 - AluJo/FRAM SINE Alu -2 300 137 1527 201 44 17 chr5 39767664 39767957 -163317575 - AluJb SINE Alu -1 301 1 222 232 127 146 chr5 39769271 39769538 -163315994 + L2 LINE L2 3052 3313 0 216 154 26 0 chr5 39769543 39769582 -163315950 + L2 LINE L2 3230 3269 -3 2516 74 0 0 chr5 39769723 39770033 -163315499 - AluY SINE Alu -1 310 1 412 303 46 17 chr5 39770432 39770607 -163314925 + MIR SINE MIR 29 208 -54 1760 187 3 16 chr5 39771123 39771428 -163314104 + AluJb SINE Alu 1 301 -11 573 236 118 25 chr5 39771428 39771631 -163313901 + MER20B DNA MER1_type 558 779 -4 305 159 16 0 chr5 39772090 39772153 -163313379 + GA-rich Low_complexity Low_complexity 2 65 0 264 308 0 28 chr5 39773700 39773807 -163311725 - L1ME LINE L1 -422 5699 5596 2392 64 30 0 chr5 39773866 39774164 -163311368 - AluSp SINE Alu -6 307 1 271 271 85 70 chr5 39775146 39775275 -163310257 + L2 LINE L2 3181 3311 -2 704 294 34 18 chr5 39775712 39776039 -163309493 + L1ME LINE L1 2173 2504 -3642 526 282 32 58 chr5 39776126 39776435 -163309097 + L1ME LINE L1 3715 4015 -2131 3272 142 46 34 chr5 39776447 39777038 -163308494 + MER39B LTR ERV1 56 653 0 613 300 64 11 chr5 39777054 39777334 -163308198 + L1ME LINE L1 4031 4325 -1821 1696 122 0 0 chr5 39777336 39777565 -163307967 + AluSx SINE Alu 1 229 -83 561 295 99 11 chr5 39777569 39777942 -163307590 + L1ME LINE L1 4411 4816 -1330 * 644 276 35 77 chr5 39777924 39778432 -163307100 + L1ME LINE L1 5318 5810 -352 1299 178 0 0 chr5 39783807 39784015 -163301517 - AluJb SINE Alu -20 292 85 339 280 42 34 chr5 39784479 39784597 -163300935 - MIR3 SINE MIR -32 176 58 195 114 0 0 chr5 39785068 39785103 -163300429 + (TA)n Simple_repeat Simple_repeat 2 36 0 491 235 209 0 chr5 39786205 39786358 -163299174 - MIR3 SINE MIR 0 208 24 302 261 150 0 chr5 39786956 39787078 -163298454 - MER5A DNA MER1_type 0 189 20 388 318 3 25 chr5 39790499 39790718 -163294814 + CT-rich Low_complexity Low_complexity 1 214 0 2608 53 0 0 chr5 39790731 39791033 -163294499 - AluY SINE Alu -9 302 1 449 206 103 73 chr5 39791051 39791216 -163294316 + MIR SINE MIR 29 198 -64 214 371 38 9 chr5 39791375 39791480 -163294052 + MIR SINE MIR 19 126 -82 386 250 74 9 chr5 39793224 39793332 -163292200 - MIR SINE MIR -128 134 20 217 271 51 76 chr5 39793458 39793576 -163291956 + MIR SINE MIR 81 195 -67 402 331 120 35 chr5 39794499 39794532 -163291000 + L1MC4 LINE L1 7126 7155 -887 2305 100 10 0 chr5 39794532 39794842 -163290690 + AluSp SINE Alu 1 313 0 402 331 120 35 chr5 39794842 39795149 -163290383 + L1MC4 LINE L1 7155 7495 -547 328 300 43 26 chr5 39795272 39795505 -163290027 + L1MC5 LINE L1 7511 7747 -214 1976 157 6 6 chr5 39795555 39795868 -163289664 - AluSq SINE Alu 0 313 1 2173 107 0 10 chr5 39795868 39796167 -163289365 - AluSq SINE Alu -17 296 1 640 305 60 20 chr5 39797383 39797632 -163287900 - MIR SINE MIR 0 262 4 2518 150 17 0 chr5 39797732 39798145 -163287387 + L1MB4 LINE L1 5364 5783 -391 2165 125 0 3 chr5 39798147 39798442 -163287090 + AluSq SINE Alu 1 294 -19 676 252 81 13 chr5 39798455 39798473 -163287059 + L1MB4 LINE L1 5901 5916 -264 216 0 0 0 chr5 39798473 39798497 -163287035 + (TA)n Simple_repeat Simple_repeat 2 25 0 676 252 81 13 chr5 39798497 39798740 -163286792 + L1MB4 LINE L1 5916 6179 -1 41236 68 7 5 chr5 39799046 39805173 -163280359 + L1PA5 LINE L1 11 6152 -2 309 26 0 0 chr5 39805744 39805782 -163279750 + (CA)n Simple_repeat Simple_repeat 2 39 0 1136 178 0 49 chr5 39806362 39806587 -163278945 - MER20 DNA MER1_type -5 214 1 275 0 29 0 chr5 39807035 39807070 -163278462 + (CA)n Simple_repeat Simple_repeat 2 37 0 210 71 0 0 chr5 39807383 39807411 -163278121 + (TC)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chr5 39807411 39807435 -163278097 + (TG)n Simple_repeat Simple_repeat 1 24 0 2324 116 0 0 chr5 39807466 39807776 -163277756 - AluSg SINE Alu 0 310 1 190 244 13 13 chr5 39807899 39807977 -163277555 + (TA)n Simple_repeat Simple_repeat 2 79 0 273 29 0 0 chr5 39810519 39810553 -163274979 + (TG)n Simple_repeat Simple_repeat 2 35 0 214 191 63 32 chr5 39810900 39810952 -163274580 + CT-rich Low_complexity Low_complexity 5 61 -8 2199 112 10 3 chr5 39810952 39811248 -163274284 - AluSg SINE Alu -12 298 1 378 0 0 0 chr5 39811381 39811423 -163274109 + (TG)n Simple_repeat Simple_repeat 1 42 0 298 360 14 0 chr5 39812722 39812869 -163272663 + (CA)n Simple_repeat Simple_repeat 2 150 0 389 248 60 8 chr5 39813156 39813273 -163272259 - MIR SINE MIR -109 153 31 23 33 0 0 chr5 39814326 39814356 -163271176 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr5 39814547 39814570 -163270962 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2431 63 0 7 chr5 39814753 39815052 -163270480 - AluY SINE Alu -14 297 1 343 242 99 50 chr5 39815282 39815443 -163270089 - MIR SINE MIR 0 262 94 1287 237 25 69 chr5 39817629 39817662 -163267870 - L1ME3A LINE L1 -22 6148 6115 2284 130 12 6 chr5 39817662 39818008 -163267524 + MER7A DNA MER2_type 1 346 0 1287 237 25 69 chr5 39818008 39818421 -163267111 - L1ME3A LINE L1 -55 6115 5722 1929 158 0 3 chr5 39818765 39819068 -163266464 - AluJb SINE Alu -9 303 2 279 320 10 93 chr5 39820497 39820549 -163264983 - MER5B DNA MER1_type 0 178 123 2152 145 3 0 chr5 39820549 39820860 -163264672 - AluSx SINE Alu 0 312 1 279 320 10 93 chr5 39820860 39821001 -163264531 - MER5B DNA MER1_type -55 123 1 601 216 101 0 chr5 39821243 39821391 -163264141 - MIR SINE MIR -28 234 72 228 276 58 23 chr5 39821391 39821478 -163264054 - MIR SINE MIR -165 97 8 263 257 29 29 chr5 39821733 39821838 -163263694 + MER5A DNA MER1_type 81 185 -4 290 265 49 103 chr5 39822082 39822435 -163263097 + MLT1I LTR MaLR 98 549 0 398 203 8 94 chr5 39822738 39822866 -163262666 - MIR3 SINE MIR 0 208 92 7492 130 39 9 chr5 39823167 39823835 -163261697 + Tigger3b DNA MER2_type 1 721 -2307 2267 93 0 29 chr5 39823835 39824145 -163261387 + AluSg SINE Alu 1 301 -9 7492 130 39 9 chr5 39824145 39824672 -163260860 + Tigger3b DNA MER2_type 721 1231 0 310 305 46 48 chr5 39824672 39824918 -163260614 + MLT1J2 LTR MaLR 155 436 -14 311 159 66 0 chr5 39825632 39825783 -163259749 + (TA)n Simple_repeat Simple_repeat 1 161 0 2033 125 0 7 chr5 39825783 39826070 -163259462 - AluSg SINE Alu -25 285 1 244 61 0 61 chr5 39826354 39826403 -163259129 + (TTTTC)n Simple_repeat Simple_repeat 5 50 0 * 246 62 0 0 chr5 39826399 39826431 -163259101 + (TCCCG)n Simple_repeat Simple_repeat 4 35 0 * 498 17 0 0 chr5 39826429 39826488 -163259044 + (TCTCC)n Simple_repeat Simple_repeat 2 60 0 2249 111 7 0 chr5 39826488 39826785 -163258747 - AluSx SINE Alu -13 299 1 40878 73 7 3 chr5 39828201 39834242 -163251290 + L1PA5 LINE L1 11 6073 -81 231 318 82 0 chr5 39837583 39837668 -163247864 + L2 LINE L2 3180 3271 -1 198 297 33 0 chr5 39837705 39837796 -163247736 + L3b LINE CR1 1374 1467 -116 25 83 0 0 chr5 39837809 39837869 -163247663 + AT_rich Low_complexity Low_complexity 1 60 0 343 252 141 0 chr5 39837966 39838101 -163247431 + L1ME LINE L1 5542 5695 -426 616 141 8 55 chr5 39839875 39840162 -163245370 + (TCCA)n Simple_repeat Simple_repeat 1 273 0 537 218 257 15 chr5 39840485 39840691 -163244841 + MLT1L LTR MaLR 3 258 -357 779 251 35 15 chr5 39841624 39841823 -163243709 + MER3 DNA MER1_type 7 209 0 280 269 21 43 chr5 39843497 39843590 -163241942 + MER20 DNA MER1_type 1 91 -128 * 659 245 73 10 chr5 39843582 39843774 -163241758 + MER20 DNA MER1_type 16 219 0 453 217 58 14 chr5 39844309 39844447 -163241085 - L1ME4a LINE L1 0 6121 5978 1325 216 15 29 chr5 39844880 39845222 -163240310 - L1MC4 LINE L1 -2 8040 7704 1662 166 10 33 chr5 39845398 39845699 -163239833 - AluJb SINE Alu -18 294 1 261 0 0 0 chr5 39845991 39846020 -163239512 + (CA)n Simple_repeat Simple_repeat 1 29 0 366 333 19 31 chr5 39847230 39847392 -163238140 + L3 LINE CR1 949 1108 -469 874 244 72 0 chr5 39847427 39847636 -163237896 - MER58A DNA MER1_type 0 224 1 355 326 95 21 chr5 39847637 39847879 -163237653 + L3 LINE CR1 1276 1535 -42 184 321 0 73 chr5 39847958 39848067 -163237465 + L2 LINE L2 3161 3261 -11 682 274 87 4 chr5 39848204 39848445 -163237087 - MIR SINE MIR 0 262 2 457 242 0 90 chr5 39848471 39848649 -163236883 - L2 LINE L2 0 3313 3152 1895 74 53 39 chr5 39848840 39849124 -163236408 - L1PA11 LINE L1 0 6174 5887 261 275 11 11 chr5 39849869 39849960 -163235572 - MIR SINE MIR -9 253 163 186 327 0 0 chr5 39850090 39850145 -163235387 - L2 LINE L2 -4 3309 3255 274 341 80 14 chr5 39850180 39850318 -163235214 + MIR3 SINE MIR 2 148 -60 201 254 100 77 chr5 39850842 39850972 -163234560 + L3 LINE CR1 1313 1445 -132 22 0 0 0 chr5 39851209 39851231 -163234301 + AT_rich Low_complexity Low_complexity 1 22 0 327 297 146 38 chr5 39853184 39853396 -163232136 + MIR SINE MIR 28 262 0 325 284 92 14 chr5 39853443 39853584 -163231948 - MIR SINE MIR -77 185 34 1831 153 40 23 chr5 39854208 39854555 -163230977 + L1MB7 LINE L1 5746 6098 -86 375 208 56 0 chr5 39854555 39854627 -163230905 + Tigger5 DNA MER2_type 1 76 -2247 258 173 77 0 chr5 39854638 39854690 -163230842 - Tigger5 DNA MER2_type -19 2304 2249 400 145 0 108 chr5 39854695 39854778 -163230754 + Tigger5 DNA MER2_type 2250 2323 0 278 111 0 0 chr5 39854804 39854840 -163230692 + MER2 DNA MER2_type 1 36 -309 348 179 0 0 chr5 39854850 39854906 -163230626 - MER2 DNA MER2_type -234 111 56 1045 199 107 46 chr5 39854917 39855198 -163230334 + MER2 DNA MER2_type 48 345 0 239 203 68 0 chr5 39855199 39855258 -163230274 + L1MB7 LINE L1 6122 6184 0 2047 191 66 7 chr5 39857279 39857720 -163227812 + MLT1C LTR MaLR 1 467 0 2735 133 4 84 chr5 39857891 39858388 -163227144 - LTR32 LTR ERVL 0 471 15 267 279 41 20 chr5 39859006 39859153 -163226379 - L1MC5 LINE L1 -182 7779 7630 291 284 99 57 chr5 39859351 39859411 -163226121 - MIR3 SINE MIR -32 176 120 2646 183 26 51 chr5 39859411 39859979 -163225553 + MLT2B3 LTR ERVL 1 554 0 291 284 99 57 chr5 39859979 39860059 -163225473 - MIR3 SINE MIR -88 120 30 303 371 125 11 chr5 39860069 39860341 -163225191 - L3b LINE CR1 -128 1455 1153 382 277 10 0 chr5 39860508 39860609 -163224923 + L1PA7 LINE L1 5862 5963 -191 2023 70 19 0 chr5 39860536 39860792 -163224740 + L1PB1 LINE L1 5891 6151 0 638 178 171 0 chr5 39861369 39861521 -163224011 - MER5B DNA MER1_type 0 178 1 1235 172 43 0 chr5 39862939 39863148 -163222384 - MER20 DNA MER1_type -1 218 1 974 176 74 0 chr5 39863360 39863536 -163221996 - MER5A DNA MER1_type 0 189 1 344 326 21 33 chr5 39863739 39863914 -163221618 - MIR SINE MIR -62 146 16 251 91 0 0 chr5 39864403 39864436 -163221096 + AluSg/x SINE Alu 171 203 -99 774 122 70 0 chr5 39864436 39864551 -163220981 + AluSg/x SINE Alu 170 292 -17 21 71 0 0 chr5 39864554 39864596 -163220936 + AT_rich Low_complexity Low_complexity 1 42 0 956 92 14 7 chr5 39864842 39864983 -163220549 + L1MB2 LINE L1 6030 6171 0 534 211 21 21 chr5 39865391 39865533 -163219999 - MER104 DNA Tc2 -3 177 36 302 167 19 0 chr5 39865546 39865600 -163219932 + L1MA9 LINE L1 5976 6030 -282 2118 91 63 3 chr5 39865734 39866021 -163219511 - AluSx SINE Alu -8 304 1 4277 99 13 10 chr5 39916972 39917659 -163167873 - L1MA2 LINE L1 -149 6155 5467 654 298 4 38 chr5 39917732 39917970 -163167562 + MLT1I LTR MaLR 180 409 0 2831 90 0 5 chr5 39918611 39918987 -163166545 + THE1C LTR MaLR 1 374 -1 281 169 13 39 chr5 39919003 39919080 -163166452 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 9185 181 45 17 chr5 39919325 39922254 -163163278 - L1MB1 LINE L1 -1 6167 3142 1859 141 42 7 chr5 39922254 39922538 -163162994 - AluSx SINE Alu -18 294 1 9185 181 45 17 chr5 39922538 39922616 -163162916 - L1MB1 LINE L1 -3026 3142 3068 1854 179 0 7 chr5 39922765 39923067 -163162465 + AluJo SINE Alu 1 300 -12 2034 171 55 2 chr5 39923195 39923593 -163161939 - MSTB1 LTR MaLR -12 420 2 203 234 0 43 chr5 39923852 39923946 -163161586 + (CATATA)n Simple_repeat Simple_repeat 4 93 0 504 303 87 19 chr5 39923963 39924435 -163161097 - L1ME2 LINE L1 -218 5929 5412 284 293 81 14 chr5 39924489 39924711 -163160821 - L1ME2 LINE L1 -833 5296 5060 355 269 72 87 chr5 39924805 39925013 -163160519 - L1ME2 LINE L1 -1201 4928 4724 683 293 117 29 chr5 39925028 39925646 -163159886 - L1ME2 LINE L1 -1454 4675 4004 2024 176 23 13 chr5 39925699 39926085 -163159447 - MLT1B LTR MaLR 0 390 1 1143 289 63 40 chr5 39926646 39927776 -163157756 - L1ME2 LINE L1 -2329 3800 2645 320 299 159 13 chr5 39928003 39928160 -163157372 - L1ME2 LINE L1 -3756 2373 2194 2332 109 6 0 chr5 39928173 39928614 -163156918 - L1P4 LINE L1 -564 5604 5162 3189 73 34 2 chr5 39928614 39929053 -163156479 + L1PA13 LINE L1 5704 6158 -5 1227 246 32 69 chr5 39929081 39929618 -163155914 - L1ME3A LINE L1 -27 6143 5627 1898 52 8 56 chr5 39930171 39930438 -163155094 + AluY SINE Alu 44 297 -14 233 276 10 10 chr5 39930446 39930544 -163154988 - L1M2 LINE L1 -4280 2569 2472 965 184 103 17 chr5 39930565 39930798 -163154734 - LTR39 LTR ERV1 -530 253 1 313 383 27 16 chr5 39930809 39930992 -163154540 - L1ME2 LINE L1 -5603 516 332 2226 106 23 3 chr5 39931859 39932161 -163153371 - AluSc SINE Alu -1 308 1 501 17 0 0 chr5 39932222 39932280 -163153252 + (TTTTA)n Simple_repeat Simple_repeat 1 58 0 2227 58 0 0 chr5 39932280 39932540 -163152992 - AluY SINE Alu -35 276 17 1250 171 199 37 chr5 39933036 39933439 -163152093 + LTR48 LTR ERV1 1 468 -319 411 180 38 66 chr5 39933461 39933596 -163151936 + LTR48 LTR ERV1 594 636 -71 207 0 0 0 chr5 39933596 39933619 -163151913 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 411 180 38 66 chr5 39933619 39933687 -163151845 + LTR48 LTR ERV1 636 704 -3 1312 173 27 52 chr5 39934279 39934433 -163151099 - MER33 DNA MER1_type -2262 323 167 2243 110 0 0 chr5 39934433 39934725 -163150807 - AluSx SINE Alu -20 292 1 1312 173 27 52 chr5 39934725 39934899 -163150633 - MER33 DNA MER1_type -2418 167 3 1095 283 84 21 chr5 39935576 39936003 -163149529 - MLT1J LTR MaLR -52 459 6 296 179 0 75 chr5 39938351 39938418 -163147114 + MIR SINE MIR 78 139 -69 892 183 6 0 chr5 39940111 39940280 -163145252 - MER3 DNA MER1_type -86 123 1 1935 166 7 7 chr5 39940900 39941208 -163144324 - AluJb SINE Alu -4 308 1 840 73 8 0 chr5 39941217 39941341 -163144191 - L1MA8 LINE L1 -3 6288 6164 1804 229 48 50 chr5 39942368 39942910 -163142622 - MLT1F LTR MaLR -1 541 1 24 0 0 0 chr5 39943007 39943031 -163142501 + AT_rich Low_complexity Low_complexity 1 24 0 1571 184 13 16 chr5 39943455 39943760 -163141772 - AluJb SINE Alu -8 304 1 377 287 72 50 chr5 39945668 39945849 -163139683 - MIR3 SINE MIR -21 187 3 1722 146 69 33 chr5 39946036 39946398 -163139134 + THE1C LTR MaLR 1 375 0 248 282 61 103 chr5 39946589 39946802 -163138730 + MIR SINE MIR 59 262 0 416 292 143 19 chr5 39948537 39948746 -163136786 + MIR SINE MIR 23 257 -5 361 224 26 79 chr5 39948834 39948986 -163136546 + L2 LINE L2 3169 3312 -1 289 362 21 7 chr5 39949129 39949270 -163136262 + MIR3 SINE MIR 3 145 -63 2508 20 0 3 chr5 39949409 39949731 -163135801 + AluY SINE Alu 1 311 0 240 59 0 0 chr5 39949846 39949880 -163135652 + (A)n Simple_repeat Simple_repeat 1 34 0 277 289 6 82 chr5 39951552 39951711 -163133821 - MIR SINE MIR -66 196 50 964 138 39 6 chr5 39951820 39952001 -163133531 - MER53 DNA DNA -2 187 1 18609 179 31 17 chr5 39952060 39958771 -163126761 + L1PA13 LINE L1 1 6813 -1 569 185 22 37 chr5 39958875 39959010 -163126522 + MLT1C LTR MaLR 6 138 -252 1809 180 82 20 chr5 39959010 39959362 -163126170 + MSTB LTR MaLR 1 382 -44 2107 129 19 43 chr5 39959362 39959735 -163125797 + THE1B LTR MaLR 1 364 0 1809 180 82 20 chr5 39959735 39959783 -163125749 + MSTB LTR MaLR 382 426 0 1397 160 27 68 chr5 39959784 39960122 -163125410 + MLT1C LTR MaLR 142 465 -2 190 164 36 0 chr5 39961321 39961376 -163124156 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 185 194 0 111 chr5 39961382 39961454 -163124078 + L2 LINE L2 3152 3215 -98 190 275 87 0 chr5 39961535 39961604 -163123928 + MIR SINE MIR 123 197 -65 532 289 54 24 chr5 39961639 39961805 -163123727 - MIR SINE MIR -74 188 18 201 222 0 0 chr5 39962312 39962348 -163123184 + (CA)n Simple_repeat Simple_repeat 1 36 0 222 208 0 0 chr5 39962366 39962414 -163123118 + (TA)n Simple_repeat Simple_repeat 1 48 0 183 218 0 0 chr5 39962463 39962518 -163123014 + (TA)n Simple_repeat Simple_repeat 2 56 0 305 217 48 0 chr5 39962619 39962702 -163122830 + L1MC3 LINE L1 6571 6657 -1128 2112 87 13 51 chr5 39962779 39963091 -163122441 - AluY SINE Alu -11 300 1 717 277 177 62 chr5 39963564 39963954 -163121578 + L2 LINE L2 2879 3313 0 1058 222 69 29 chr5 39964653 39965032 -163120500 + LTR37A LTR ERV1 33 426 0 22 0 0 0 chr5 39965784 39965806 -163119726 + AT_rich Low_complexity Low_complexity 1 22 0 5413 147 19 5 chr5 39965817 39966707 -163118825 - MER4D LTR ERV1 0 903 1 1661 194 146 7 chr5 39967320 39967723 -163117809 + MLT1D LTR MaLR 1 459 -46 589 319 20 20 chr5 39968451 39968655 -163116877 - MIR SINE MIR -48 214 11 1690 177 16 22 chr5 39968738 39969049 -163116483 + AluJb SINE Alu 1 309 -3 567 285 130 20 chr5 39969286 39969486 -163116046 - MIR SINE MIR -38 224 3 404 309 28 51 chr5 39969613 39969791 -163115741 - MIR SINE MIR -54 208 35 253 239 14 14 chr5 39970092 39970163 -163115369 + MER113 DNA MER1_type? 2 72 -449 248 312 144 16 chr5 39970855 39970980 -163114552 - MIR SINE MIR -73 189 49 895 204 60 156 chr5 39970992 39971472 -163114060 + MLT1F1 LTR MaLR 6 439 -128 2280 85 24 61 chr5 39971949 39972144 -163113388 - THE1B LTR MaLR 0 364 188 2201 104 0 26 chr5 39972144 39972452 -163113080 - AluY SINE Alu -11 300 1 2280 85 24 61 chr5 39972452 39972634 -163112898 - THE1B LTR MaLR -176 188 1 731 242 0 28 chr5 39973125 39973307 -163112225 - AluJo SINE Alu -14 298 122 2468 182 55 108 chr5 39973773 39974541 -163110991 - LTR8A LTR ERV1 0 727 1 20035 87 25 23 chr5 39976421 39980478 -163105054 - L1PA7 LINE L1 0 6154 2092 12092 111 13 29 chr5 39980580 39983416 -163102116 - L1P3 LINE L1 -3608 2853 1 1168 167 39 20 chr5 39984155 39984359 -163101173 - AluJb SINE Alu -101 211 4 261 0 0 0 chr5 39984360 39984389 -163101143 + (TC)n Simple_repeat Simple_repeat 2 30 0 387 0 0 0 chr5 39984447 39984490 -163101042 + (TG)n Simple_repeat Simple_repeat 2 44 0 257 256 110 0 chr5 39984854 39984936 -163100596 - L2 LINE L2 0 3313 3223 557 276 123 0 chr5 39984940 39985110 -163100422 - MIR SINE MIR -13 249 59 2202 36 0 0 chr5 39985342 39985595 -163099937 + AluY SINE Alu 52 304 -7 21 0 0 0 chr5 39986157 39986178 -163099354 + AT_rich Low_complexity Low_complexity 1 21 0 304 232 0 0 chr5 39986265 39986334 -163099198 + Charlie5 DNA MER1_type 2 70 -2542 482 176 110 7 chr5 39986337 39986473 -163099059 + Charlie5 DNA MER1_type 2475 2624 0 550 325 16 10 chr5 39987355 39987549 -163097983 + MIR SINE MIR 12 206 -56 2084 98 36 0 chr5 39988097 39988372 -163097160 + AluSp SINE Alu 1 285 -28 1062 313 74 0 chr5 39990567 39990944 -163094588 - LTR16C LTR ERVL -18 473 69 356 267 73 33 chr5 39992037 39992187 -163093345 - MIR SINE MIR -71 191 36 22 80 0 0 chr5 39994103 39994153 -163091379 + AT_rich Low_complexity Low_complexity 1 50 0 484 308 65 28 chr5 39994887 39995096 -163090436 + MIR SINE MIR 7 228 -34 2028 152 20 47 chr5 39995096 39995497 -163090035 + MLT1B LTR MaLR 1 390 0 484 308 65 28 chr5 39995497 39995534 -163089998 + MIR SINE MIR 228 262 0 311 309 11 11 chr5 39996713 39996807 -163088725 + MIR3 SINE MIR 113 206 -2 28 29 0 0 chr5 39997239 39997274 -163088258 + AT_rich Low_complexity Low_complexity 1 35 0 1911 166 0 7 chr5 39997287 39997577 -163087955 + AluSx SINE Alu 1 288 -24 715 171 0 0 chr5 39997577 39997688 -163087844 - AluJb SINE Alu -201 111 1 195 310 103 43 chr5 39998020 39998136 -163087396 + L2 LINE L2 3191 3313 0 2013 94 57 13 chr5 39998354 39998652 -163086880 + AluSx SINE Alu 2 312 0 186 65 43 22 chr5 40000134 40000180 -163085352 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 511 247 153 28 chr5 40000363 40000587 -163084945 - MIR SINE MIR 0 262 16 263 230 219 62 chr5 40000701 40000879 -163084653 - L3 LINE CR1 -26 1551 1346 1498 244 21 41 chr5 40001021 40001489 -163084043 - LTR40b LTR ERVL -3 459 1 296 285 39 50 chr5 40001556 40001735 -163083797 - L3 LINE CR1 -606 971 795 2311 114 0 9 chr5 40001836 40002151 -163083381 - AluSx SINE Alu 0 312 1 394 327 134 27 chr5 40002282 40002547 -163082985 + L2 LINE L2 2770 3054 -218 1899 170 7 3 chr5 40002842 40003142 -163082390 + AluJb SINE Alu 1 301 -11 25 0 0 0 chr5 40003918 40003943 -163081589 + AT_rich Low_complexity Low_complexity 1 25 0 380 296 107 45 chr5 40003978 40004867 -163080665 + L1MCb LINE L1 1014 2172 -4573 2298 109 0 0 chr5 40005306 40005600 -163079932 - AluSx SINE Alu -18 294 1 456 248 68 60 chr5 40006061 40006311 -163079221 + MIR SINE MIR 11 262 0 303 321 92 38 chr5 40006431 40006671 -163078861 - L3 LINE CR1 -195 1382 1130 1980 158 20 35 chr5 40006739 40007017 -163078515 + Tigger2 DNA MER2_type 1 282 -2436 4532 67 5 0 chr5 40007017 40007602 -163077930 + L1PA13 LINE L1 5573 6160 -3 1980 158 20 35 chr5 40007602 40007760 -163077772 + Tigger2 DNA MER2_type 282 2710 -8 1910 154 3 20 chr5 40008679 40009024 -163076508 - MER46B DNA MER2_type -22 214 1 2371 107 25 25 chr5 40009246 40009610 -163075922 + THE1B LTR MaLR 1 364 0 370 282 16 114 chr5 40009715 40009970 -163075562 - MLT1I LTR MaLR -146 263 34 1671 117 182 0 chr5 40011256 40011520 -163074012 - AluSx SINE Alu 0 312 1 33 0 0 0 chr5 40012780 40012813 -163072719 + AT_rich Low_complexity Low_complexity 1 33 0 33 56 0 0 chr5 40012900 40012954 -163072578 + AT_rich Low_complexity Low_complexity 1 54 0 373 266 140 42 chr5 40012954 40013168 -163072364 - L1M4 LINE L1 -1233 4913 4679 4123 198 41 2 chr5 40013177 40013977 -163071555 + L1PA13 LINE L1 2 832 -5955 2948 182 28 17 chr5 40013981 40019611 -163065921 + L1PA13 LINE L1 890 6777 -37 25 0 0 0 chr5 40019611 40019636 -163065896 + AT_rich Low_complexity Low_complexity 1 25 0 867 230 65 18 chr5 40019765 40020042 -163065490 - L1ME LINE L1 -698 5464 5156 2188 105 10 3 chr5 40020042 40020338 -163065194 - AluSq SINE Alu -15 298 1 867 230 65 18 chr5 40020338 40020544 -163064988 - L1ME LINE L1 -1006 5156 4961 1248 236 21 45 chr5 40021091 40021467 -163064065 + MLT2B1 LTR ERVL 1 416 -104 270 115 0 0 chr5 40021500 40021552 -163063980 + (TA)n Simple_repeat Simple_repeat 1 52 0 314 311 11 0 chr5 40022500 40022590 -163062942 - MER81 DNA DNA -21 93 3 719 259 113 37 chr5 40022643 40022853 -163062679 - L1MC4a LINE L1 -1958 5850 5601 2539 114 5 11 chr5 40022853 40023230 -163062302 - THE1C LTR MaLR 0 375 1 719 259 113 37 chr5 40023230 40023374 -163062158 - L1MC4a LINE L1 -2207 5601 5469 808 340 66 28 chr5 40023708 40024313 -163061219 - L1MC4a LINE L1 -984 5162 4535 21 0 0 0 chr5 40024323 40024344 -163061188 + AT_rich Low_complexity Low_complexity 1 21 0 254 311 90 0 chr5 40024540 40024762 -163060770 - L1MC4a LINE L1 -1836 4310 4069 1081 123 6 0 chr5 40024813 40024976 -163060556 + L1PA16 LINE L1 5621 5784 -382 41714 41 2 1 chr5 40025000 40031138 -163054394 + L1PA3 LINE L1 13 6152 -3 2271 137 50 0 chr5 40031153 40031532 -163054000 + L1PA16 LINE L1 5769 6166 0 355 258 35 62 chr5 40031549 40031809 -163053723 - L1MC4a LINE L1 -2166 3980 3728 450 265 73 69 chr5 40031959 40032371 -163053161 - L1MC4a LINE L1 -2629 3517 3075 1258 279 77 26 chr5 40032540 40033074 -163052458 + L1ME3A LINE L1 5326 5886 -284 234 254 0 0 chr5 40033242 40033297 -163052235 + L1ME3A LINE L1 6027 6081 -89 21 36 0 0 chr5 40033298 40033326 -163052206 + AT_rich Low_complexity Low_complexity 1 28 0 732 251 74 35 chr5 40033911 40034194 -163051338 + LTR16C LTR ERVL 194 487 -4 701 249 87 4 chr5 40034799 40035040 -163050492 + MER45C DNA AcHobo 5 265 -688 669 197 151 18 chr5 40035134 40035352 -163050180 + MER45C DNA AcHobo 707 953 0 1279 153 14 5 chr5 40035474 40035689 -163049843 - L1PA16 LINE L1 -9 6157 5941 223 298 35 0 chr5 40037464 40037521 -163048011 + L2 LINE L2 3181 3239 -33 280 322 25 41 chr5 40037617 40037738 -163047794 - MIR SINE MIR -61 147 29 1828 181 17 56 chr5 40037932 40038342 -163047190 - MSTD LTR MaLR 0 396 3 306 333 52 75 chr5 40038507 40038681 -163046851 - L2 LINE L2 -1 3271 3102 25 65 0 0 chr5 40039123 40039169 -163046363 + AT_rich Low_complexity Low_complexity 1 46 0 1894 124 4 8 chr5 40039403 40039669 -163045863 - AluSx SINE Alu -11 301 37 2361 78 0 0 chr5 40039695 40039990 -163045542 + AluY SINE Alu 1 295 -16 332 205 12 169 chr5 40040019 40040185 -163045347 - MER102a DNA MER1_type 0 330 191 1841 143 56 3 chr5 40040529 40040815 -163044717 + AluJb SINE Alu 3 303 -9 215 392 0 0 chr5 40040907 40041009 -163044523 + L2 LINE L2 2950 3051 -221 867 186 134 22 chr5 40041347 40041549 -163043983 - MLT1D LTR MaLR 0 505 272 2252 136 34 0 chr5 40041549 40041901 -163043631 - THE1B LTR MaLR 0 364 1 867 186 134 22 chr5 40041901 40041929 -163043603 - MLT1D LTR MaLR -233 272 249 1555 205 0 18 chr5 40041984 40042267 -163043265 - AluJb SINE Alu -34 278 1 499 175 0 117 chr5 40042277 40042414 -163043118 - MLT1D LTR MaLR -396 109 2 21 0 0 0 chr5 40042928 40042949 -163042583 + AT_rich Low_complexity Low_complexity 1 21 0 276 109 0 0 chr5 40043404 40043450 -163042082 + MADE1 DNA Mariner 35 80 0 1807 234 92 8 chr5 40043459 40043950 -163041582 - MLT1F LTR MaLR -10 532 1 309 284 48 106 chr5 40043963 40044361 -163041171 - MLT1F-int LTR MaLR -14 1357 983 382 356 11 11 chr5 40044503 40044683 -163040849 - MLT1F-int LTR MaLR -493 878 699 475 315 30 12 chr5 40044849 40045014 -163040518 - MLT1F LTR MaLR -369 173 6 22 0 0 0 chr5 40045021 40045043 -163040489 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr5 40045122 40045143 -163040389 + AT_rich Low_complexity Low_complexity 1 21 0 216 366 12 0 chr5 40046616 40046698 -163038834 - L3b LINE CR1 -69 1514 1432 766 291 73 24 chr5 40046714 40047126 -163038406 + MLT1J1 LTR MaLR 15 446 0 1906 186 84 5 chr5 40047763 40048156 -163037376 - MSTB LTR MaLR -2 424 1 914 224 41 0 chr5 40049197 40049393 -163036139 + MER63A DNA MER1_type 1 204 -6 997 185 70 23 chr5 40049754 40050013 -163035519 - L1 LINE L1 -1693 4453 4183 728 154 87 0 chr5 40050017 40050166 -163035366 + L1MB1 LINE L1 5971 6132 -57 * 5351 147 27 17 chr5 40050164 40051665 -163033867 + L1MA9 LINE L1 4797 6312 0 1021 106 25 127 chr5 40051666 40051903 -163033629 + L1MA10 LINE L1 6121 6333 -1 341 279 75 54 chr5 40052215 40052771 -163032761 + L1MEd LINE L1 599 1166 -4953 960 349 121 10 chr5 40052820 40053416 -163032116 + L2 LINE L2 2125 2786 -528 1271 239 86 35 chr5 40053435 40053891 -163031641 + MLT1D LTR MaLR 26 504 -1 792 285 10 0 chr5 40054074 40054281 -163031251 - LTR16C LTR ERVL 0 491 283 655 293 87 57 chr5 40056456 40056695 -163028837 - L2 LINE L2 0 3313 3083 2262 106 7 0 chr5 40056695 40056997 -163028535 + AluSx SINE Alu 1 304 -8 2083 111 52 0 chr5 40057004 40057292 -163028240 + AluSx SINE Alu 1 303 -9 655 293 87 57 chr5 40057292 40057413 -163028119 - L2 LINE L2 -235 3078 2934 309 343 30 10 chr5 40057466 40057565 -163027967 - L2 LINE L2 -25 3247 3147 1088 206 14 0 chr5 40057938 40058152 -163027380 + U3 snRNA snRNA 1 217 0 417 139 16 33 chr5 40058167 40058289 -163027243 + GA-rich Low_complexity Low_complexity 1 120 0 24 0 0 0 chr5 40058534 40058558 -163026974 + AT_rich Low_complexity Low_complexity 1 24 0 477 0 0 0 chr5 40059174 40059227 -163026305 + (TG)n Simple_repeat Simple_repeat 1 53 0 192 268 0 0 chr5 40059542 40059583 -163025949 - L2 LINE L2 -9 3304 3264 312 200 0 0 chr5 40060265 40060330 -163025202 + GA-rich Low_complexity Low_complexity 3 67 0 281 287 75 11 chr5 40060504 40060615 -163024917 + MIR SINE MIR 39 156 -52 758 187 113 0 chr5 40061859 40062089 -163023443 - MER5C DNA MER1_type 0 324 69 1446 159 74 28 chr5 40062560 40062843 -163022689 + AluJo SINE Alu 1 296 -16 207 340 0 0 chr5 40063700 40063753 -163021779 - L2 LINE L2 -19 3294 3242 449 315 46 0 chr5 40064064 40064194 -163021338 + L2 LINE L2 3137 3272 0 653 245 66 31 chr5 40064556 40064674 -163020858 + MIR SINE MIR 59 188 -74 1037 177 23 156 chr5 40064674 40065104 -163020428 - MER93b LTR ERV1 0 373 1 653 245 66 31 chr5 40065104 40065181 -163020351 + MIR SINE MIR 188 261 -1 24 0 0 0 chr5 40066860 40066884 -163018648 + AT_rich Low_complexity Low_complexity 1 24 0 1437 193 108 68 chr5 40067081 40067563 -163017969 - MLT1D LTR MaLR -2 503 3 2856 164 66 63 chr5 40067604 40068329 -163017203 - LTR8A LTR ERV1 0 727 1 252 0 0 0 chr5 40068506 40068534 -163016998 + (TG)n Simple_repeat Simple_repeat 2 29 0 205 314 152 0 chr5 40069065 40069170 -163016362 - MIR SINE MIR -77 185 65 364 167 79 79 chr5 40069179 40069305 -163016227 + L1MC3 LINE L1 938 1063 -4982 * 649 176 32 27 chr5 40069284 40069491 -163016041 + L1MC3 LINE L1 1987 2294 -4425 10643 172 42 18 chr5 40069504 40071790 -163013742 + L1MC3 LINE L1 5865 8203 0 1422 238 13 18 chr5 40071786 40072172 -163013360 + L1MC3 LINE L1 5420 5803 -363 * 14996 173 43 7 chr5 40072235 40074118 -163011414 + L1PB1 LINE L1 2 1815 -5052 7696 25 1 0 chr5 40074118 40075173 -163010359 + L1PA3 LINE L1 5101 6155 0 14996 173 43 7 chr5 40075173 40075540 -163009992 + L1PB1 LINE L1 1815 2167 -4700 1737 174 34 7 chr5 40075540 40075833 -163009699 + AluJb SINE Alu 1 301 -11 14996 173 43 7 chr5 40075833 40076461 -163009071 + L1PB1 LINE L1 2167 2771 -4096 1945 167 0 3 chr5 40076461 40076772 -163008760 - AluSx SINE Alu -2 310 1 14996 173 43 7 chr5 40076772 40080522 -163005010 + L1PB1 LINE L1 2771 6867 0 388 306 46 46 chr5 40080522 40080741 -163004791 + L1MC3 LINE L1 5937 6155 -1630 2472 118 48 22 chr5 40081313 40081730 -163003802 + MSTC LTR MaLR 1 428 0 935 185 13 69 chr5 40081732 40081964 -163003568 - MER20 DNA MER1_type 0 219 1 345 338 62 25 chr5 40081991 40082151 -163003381 + MIR SINE MIR 37 202 -60 1946 199 44 3 chr5 40082604 40083060 -163002472 - MLT1F LTR MaLR -1 541 14 287 256 0 35 chr5 40083476 40083562 -163001970 + MSTB LTR MaLR 188 270 -156 1821 171 7 10 chr5 40083575 40083873 -163001659 - AluJb SINE Alu -15 297 1 2372 127 8 24 chr5 40084406 40084776 -163000756 - THE1B LTR MaLR 0 364 1 2108 149 91 13 chr5 40084963 40085360 -163000172 + MSTA LTR MaLR 1 428 0 9000 167 15 7 chr5 40085362 40086540 -162998992 + MSTA-int LTR MaLR 2 1197 -454 1680 161 69 28 chr5 40086540 40086900 -162998632 + THE1C LTR MaLR 1 375 0 9000 167 15 7 chr5 40086900 40087353 -162998179 + MSTA-int LTR MaLR 1197 1645 -6 2201 155 67 5 chr5 40087361 40087762 -162997770 + MSTA LTR MaLR 3 428 0 207 0 0 0 chr5 40088451 40088474 -162997058 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1379 211 14 28 chr5 40088477 40088762 -162996770 - AluJb SINE Alu -27 285 5 304 304 36 51 chr5 40089275 40089413 -162996119 + MIR SINE MIR 77 212 -50 247 278 124 0 chr5 40090222 40090319 -162995213 - MIR SINE MIR -68 194 86 1091 207 42 73 chr5 40090320 40090678 -162994854 + MLT1A2 LTR MaLR 1 347 -27 1441 192 22 53 chr5 40090937 40091255 -162994277 + AluJo SINE Alu 3 310 -2 23 33 0 0 chr5 40092367 40092397 -162993135 + AT_rich Low_complexity Low_complexity 1 30 0 1087 116 0 0 chr5 40092960 40093106 -162992426 - AluSg/x SINE Alu -21 291 146 1059 180 27 0 chr5 40093151 40093373 -162992159 + L1M3 LINE L1 5417 5644 -536 1416 139 132 0 chr5 40093375 40093648 -162991884 + MLT2C2 LTR ERVL 1 309 -155 446 173 45 83 chr5 40093649 40093782 -162991750 + MER65B LTR ERV1 1 128 -403 271 286 26 56 chr5 40093920 40094151 -162991381 + MER65A LTR ERV1 222 445 0 318 89 0 36 chr5 40094169 40094225 -162991307 + MLT2C1 LTR ERVL 296 349 -48 277 361 148 7 chr5 40094781 40094936 -162990596 + MIR3 SINE MIR 30 206 -2 191 394 53 11 chr5 40096116 40096210 -162989322 - L2 LINE L2 -32 3240 3143 188 318 47 83 chr5 40096581 40096773 -162988759 - MER5A DNA MER1_type -4 185 1 2316 84 3 0 chr5 40097252 40097549 -162987983 + AluSc SINE Alu 3 300 -9 186 292 10 73 chr5 40097671 40097767 -162987765 + L2 LINE L2 3180 3269 -44 442 269 26 17 chr5 40098186 40098342 -162987190 + MER5B DNA MER1_type 29 188 -1 372 224 0 0 chr5 40098517 40098584 -162986948 + MER91A DNA MER1_type 3 69 -71 260 287 116 22 chr5 40098720 40098901 -162986631 + L2 LINE L2 3116 3313 0 216 135 0 0 chr5 40098924 40098961 -162986571 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 267 258 177 38 chr5 40099069 40099278 -162986254 - MLT1L LTR MaLR -8 607 370 466 261 30 85 chr5 40100579 40100778 -162984754 - MIR SINE MIR -71 191 4 283 234 32 53 chr5 40100923 40101017 -162984515 - L2 LINE L2 -21 3251 3160 193 304 0 0 chr5 40101072 40101128 -162984404 - L3b LINE CR1 -346 1237 1182 1966 122 0 11 chr5 40101880 40102182 -162983350 - AluY SINE Alu 0 303 5 269 253 149 23 chr5 40102656 40102743 -162982789 + L2 LINE L2 3170 3267 -5 2417 80 0 0 chr5 40102874 40103174 -162982358 - AluY SINE Alu -11 300 1 3917 164 105 56 chr5 40103513 40104082 -162981450 - L1MC3 LINE L1 -14 7771 7130 2548 69 3 0 chr5 40104082 40104387 -162981145 - AluSp SINE Alu -7 306 1 3917 164 105 56 chr5 40104387 40104830 -162980702 - L1MC3 LINE L1 -655 7130 6710 198 299 45 0 chr5 40106552 40106619 -162978913 + MIR SINE MIR 78 147 -61 343 284 37 0 chr5 40108086 40108167 -162977365 + L2 LINE L2 3184 3267 -5 401 295 46 29 chr5 40108712 40108885 -162976647 + MER5B DNA MER1_type 1 176 -2 28 0 0 0 chr5 40109767 40109795 -162975737 + AT_rich Low_complexity Low_complexity 1 28 0 4218 36 0 0 chr5 40109825 40110329 -162975203 - L1PA4 LINE L1 0 6155 5652 306 277 24 12 chr5 40110464 40110547 -162974985 + MER5A DNA MER1_type 47 130 -59 2144 117 24 0 chr5 40110557 40110848 -162974684 + AluSx SINE Alu 9 306 -6 1606 189 99 35 chr5 40111110 40111544 -162973988 + MLT2B1 LTR ERVL 3 464 -56 195 184 0 0 chr5 40111562 40111600 -162973932 + (TA)n Simple_repeat Simple_repeat 1 38 0 282 115 19 0 chr5 40111638 40111690 -162973842 + MLT2B1 LTR ERVL 464 516 -4 28 29 0 0 chr5 40112461 40112496 -162973036 + AT_rich Low_complexity Low_complexity 1 35 0 1068 253 107 52 chr5 40113396 40113910 -162971622 - MLT1F LTR MaLR 0 542 1 4048 119 25 61 chr5 40114690 40115444 -162970088 + LTR8A LTR ERV1 1 727 0 524 298 75 3 chr5 40115470 40115669 -162969863 - MIR SINE MIR -5 257 43 327 366 46 6 chr5 40116623 40116798 -162968734 - MIR SINE MIR -70 192 11 353 185 206 0 chr5 40117648 40117740 -162967792 - L2 LINE L2 0 3313 3203 22 0 0 0 chr5 40118298 40118320 -162967212 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr5 40118416 40118452 -162967080 + AT_rich Low_complexity Low_complexity 1 36 0 204 350 126 30 chr5 40118556 40118953 -162966579 + L2 LINE L2 1690 2124 -1190 285 217 0 17 chr5 40119531 40119591 -162965941 + MLT1K LTR MaLR 184 242 -346 502 342 8 41 chr5 40121409 40121652 -162963880 + MIR SINE MIR 20 254 -8 22 0 0 0 chr5 40121975 40121997 -162963535 + AT_rich Low_complexity Low_complexity 1 22 0 287 240 27 0 chr5 40122027 40122102 -162963430 + (TG)n Simple_repeat Simple_repeat 2 78 0 4330 138 40 0 chr5 40122120 40122865 -162962667 - Tigger2 DNA MER2_type -1 2717 1943 2426 148 24 0 chr5 40122865 40123283 -162962249 - L1PBa LINE L1 -6434 429 2 10018 65 2 4 chr5 40123414 40124792 -162960740 - L1P LINE L1 -4148 1998 624 4149 69 17 27 chr5 40124792 40125489 -162960043 - L1P LINE L1 -5455 691 2 370 313 93 13 chr5 40126303 40126453 -162959079 - MER91A DNA MER1_type 0 196 35 619 205 33 0 chr5 40127244 40127395 -162958137 - L1ME3A LINE L1 -8 6162 6007 24 0 0 0 chr5 40127401 40127425 -162958107 + AT_rich Low_complexity Low_complexity 1 24 0 693 266 29 0 chr5 40127906 40128079 -162957453 + MER63A DNA MER1_type 33 210 0 2414 162 119 79 chr5 40128106 40128802 -162956730 - LTR8A LTR ERV1 0 727 4 194 337 22 11 chr5 40129233 40129322 -162956210 - L2 LINE L2 -5 3308 3219 5741 107 15 37 chr5 40129416 40130529 -162955003 + L1PB1 LINE L1 5057 6147 -4 978 216 5 0 chr5 40130774 40130968 -162954564 - MLT1B LTR MaLR 0 390 196 304 238 125 0 chr5 40130957 40131037 -162954495 - MLT1B LTR MaLR -298 92 3 * 1983 202 87 34 chr5 40131037 40131617 -162953915 - MLT1E2 LTR MaLR -18 608 1 379 258 93 41 chr5 40131642 40131733 -162953799 - L1M4 LINE L1 -2040 4106 4021 393 39 0 0 chr5 40131733 40131784 -162953748 + (TG)n Simple_repeat Simple_repeat 2 52 0 379 258 93 41 chr5 40131784 40131886 -162953646 - L1M4 LINE L1 -2125 4021 3903 213 65 0 0 chr5 40132221 40132252 -162953280 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 26307 34 0 0 chr5 40132638 40136785 -162948747 + L1PA3 LINE L1 2008 6155 0 9786 149 24 5 chr5 40136800 40138538 -162946994 - Tigger2 DNA MER2_type -946 1772 1 248 313 35 26 chr5 40138997 40139112 -162946420 + MER5A DNA MER1_type 4 119 -70 392 325 36 40 chr5 40139743 40139995 -162945537 + L1M4 LINE L1 4699 4949 -1197 331 300 20 36 chr5 40140017 40140260 -162945272 + L1M3e LINE L1 -718 565 -5738 2365 263 54 71 chr5 40140559 40140820 -162944712 + L1M3e LINE L1 818 1082 -5300 2112 115 3 30 chr5 40140820 40141124 -162944408 + AluSg SINE Alu 2 297 -13 2365 263 54 71 chr5 40141124 40142084 -162943448 + L1M3e LINE L1 1082 1851 -4531 2222 133 0 0 chr5 40142084 40142392 -162943140 + AluSx SINE Alu 1 308 -4 2365 263 54 71 chr5 40142392 40143442 -162942090 + L1M3e LINE L1 1851 2917 -3465 5911 93 16 6 chr5 40143444 40144193 -162941339 - L1PA13 LINE L1 0 6163 5423 5327 117 4 10 chr5 40144193 40144978 -162940554 + LTR17 LTR ERV1 1 780 0 5911 93 16 6 chr5 40144978 40145719 -162939813 - L1PA13 LINE L1 -740 5423 4656 210 37 0 0 chr5 40145719 40145746 -162939786 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5911 93 16 6 chr5 40145746 40146078 -162939454 - L1PA13 LINE L1 -1507 4656 4329 659 181 30 121 chr5 40146124 40146356 -162939176 + MLT1A2 LTR MaLR 1 211 -163 2289 191 47 8 chr5 40146382 40146510 -162939022 + L1MA9 LINE L1 5168 5290 -1022 195 42 0 0 chr5 40146510 40146534 -162938998 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2289 191 47 8 chr5 40146534 40146998 -162938534 + L1MA9 LINE L1 5290 5779 -533 342 0 0 0 chr5 40147001 40147039 -162938493 + (CA)n Simple_repeat Simple_repeat 2 39 0 267 308 0 11 chr5 40147088 40147179 -162938353 - MLT1A2 LTR MaLR -148 226 137 23 0 0 0 chr5 40147192 40147215 -162938317 + AT_rich Low_complexity Low_complexity 1 23 0 2064 190 38 8 chr5 40147225 40147694 -162937838 + L1MA9 LINE L1 5788 6270 -42 760 185 19 0 chr5 40147775 40147932 -162937600 + L1MB1 LINE L1 5738 5897 -271 3441 33 9 0 chr5 40147936 40148493 -162937039 - L1P2 LINE L1 -647 5508 4949 4092 31 0 0 chr5 40148493 40148978 -162936554 + L1PA4 LINE L1 5660 6144 -11 348 103 17 0 chr5 40148989 40149047 -162936485 + L1M3 LINE L1 5572 5630 -704 28 48 0 0 chr5 40149047 40149089 -162936443 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr5 40149132 40149164 -162936368 + AT_rich Low_complexity Low_complexity 1 32 0 5099 94 7 1 chr5 40149288 40150008 -162935524 + L1PA14 LINE L1 5438 6161 0 997 274 82 3 chr5 40150607 40150947 -162934585 + MLT1G LTR MaLR 10 376 -214 263 83 0 42 chr5 40150936 40150984 -162934548 - LTR16A1 LTR ERVL -346 111 66 * 1730 153 68 41 chr5 40151005 40151370 -162934162 - THE1C LTR MaLR 0 375 1 2371 26 16 20 chr5 40151381 40151687 -162933845 - AluY SINE Alu -6 305 1 3891 160 28 4 chr5 40151842 40152529 -162933003 + MER50 LTR ERV1 1 703 -31 1906 169 21 21 chr5 40153090 40153427 -162932105 + MER1B DNA MER1_type 1 337 0 300 296 66 13 chr5 40155441 40155593 -162929939 - L1 LINE L1 -1881 4265 4106 471 183 8 75 chr5 40155597 40155717 -162929815 - MER20 DNA MER1_type -15 204 93 908 192 6 33 chr5 40156455 40156637 -162928895 - MER45A DNA AcHobo 0 178 2 243 0 0 0 chr5 40157071 40157098 -162928434 + (CA)n Simple_repeat Simple_repeat 1 27 0 459 377 75 22 chr5 40157186 40157557 -162927975 + L3 LINE CR1 501 891 -686 854 277 96 27 chr5 40157732 40158182 -162927350 + L1ME3A LINE L1 5478 5955 -215 2028 129 17 3 chr5 40158281 40158583 -162926949 + AluSx SINE Alu 1 306 -6 218 299 15 15 chr5 40158820 40158887 -162926645 + L3 LINE CR1 1209 1275 -302 2381 72 0 3 chr5 40159407 40159697 -162925835 - AluY SINE Alu -22 289 1 207 0 0 0 chr5 40159890 40159913 -162925619 + (TG)n Simple_repeat Simple_repeat 2 24 0 647 255 165 46 chr5 40160559 40160904 -162924628 + MLT1F1 LTR MaLR 29 419 -148 5362 122 73 75 chr5 40160910 40162455 -162923077 + pTR5 LTR ERV1 743 2438 0 603 248 14 0 chr5 40162460 40162605 -162922927 + MLT1F1 LTR MaLR 421 567 0 397 198 12 12 chr5 40162643 40162724 -162922808 - Tigger7 DNA MER2_type 0 2487 2407 2082 211 15 0 chr5 40162741 40163139 -162922393 - Tigger7 DNA MER2_type -326 407 4 2042 234 30 0 chr5 40163215 40163684 -162921848 + MLT1D LTR MaLR 21 503 -2 1785 171 10 26 chr5 40163933 40164237 -162921295 + AluJb SINE Alu 6 304 -8 273 400 9 0 chr5 40164265 40164380 -162921152 + L2 LINE L2 3148 3263 -9 2048 131 0 28 chr5 40164654 40164974 -162920558 - AluSq SINE Alu -2 311 1 2732 138 7 2 chr5 40165240 40165666 -162919866 - MSTA LTR MaLR 0 428 1 218 304 0 0 chr5 40166387 40166479 -162919053 + (TA)n Simple_repeat Simple_repeat 1 92 0 405 309 43 16 chr5 40166493 40166681 -162918851 + HAL1b LINE L1 399 591 -757 399 300 104 63 chr5 40166873 40166952 -162918580 + L1ME4a LINE L1 5624 5698 -423 2308 120 0 0 chr5 40166952 40167260 -162918272 + AluSx SINE Alu 1 308 -4 399 300 104 63 chr5 40167260 40167643 -162917889 + L1ME4a LINE L1 5698 6105 -16 2016 124 135 36 chr5 40167698 40168084 -162917448 + MSTA LTR MaLR 5 428 0 235 280 15 129 chr5 40168567 40168699 -162916833 - L2 LINE L2 -33 3280 3164 26 30 0 0 chr5 40169890 40169923 -162915609 + AT_rich Low_complexity Low_complexity 1 33 0 362 339 87 23 chr5 40169935 40170153 -162915379 + MIR SINE MIR 31 262 0 189 171 0 0 chr5 40170463 40170498 -162915034 + (CA)n Simple_repeat Simple_repeat 2 36 0 269 284 25 12 chr5 40170645 40170726 -162914806 + MER5B DNA MER1_type 20 101 -77 716 336 4 0 chr5 40171961 40172205 -162913327 - MIR SINE MIR -16 246 2 916 235 22 38 chr5 40172260 40172527 -162913005 + MLT1D LTR MaLR 7 270 -197 1623 202 36 50 chr5 40173589 40174030 -162911502 + MLT1C LTR MaLR 1 435 -32 188 298 26 88 chr5 40174327 40174441 -162911091 + L2 LINE L2 2992 3098 -174 1524 166 9 67 chr5 40174584 40174928 -162910604 - MLT1D LTR MaLR -1 504 181 219 375 83 28 chr5 40175022 40175417 -162910115 + L2 LINE L2 2469 2885 -429 187 308 10 67 chr5 40175476 40175580 -162909952 + L2 LINE L2 3216 3313 0 1636 197 0 0 chr5 40176130 40176434 -162909098 - AluJb SINE Alu 0 312 9 267 271 16 49 chr5 40176546 40176668 -162908864 + HAL1b LINE L1 773 890 -458 293 284 43 14 chr5 40176787 40176928 -162908604 + HAL1 LINE L1 2225 2369 -138 1072 271 95 24 chr5 40177266 40177686 -162907846 + LTR16A1 LTR ERVL 8 457 0 327 49 0 0 chr5 40177770 40177811 -162907721 + (TG)n Simple_repeat Simple_repeat 1 41 0 332 222 0 44 chr5 40178000 40178090 -162907442 - L1MC4 LINE L1 -1343 6699 6614 237 247 13 0 chr5 40178095 40178172 -162907360 + (TA)n Simple_repeat Simple_repeat 2 79 0 26 0 0 0 chr5 40178975 40179001 -162906531 + AT_rich Low_complexity Low_complexity 1 26 0 329 333 82 13 chr5 40179371 40179530 -162906002 + MIR3 SINE MIR 34 203 -5 661 286 82 47 chr5 40179809 40180127 -162905405 - MLT1L LTR MaLR -189 426 98 298 261 33 11 chr5 40180200 40180292 -162905240 - MIR SINE MIR -75 133 40 1572 237 2 20 chr5 40180880 40181318 -162904214 - L1P LINE L1 -993 5153 4724 23 0 0 0 chr5 40181586 40181609 -162903923 + AT_rich Low_complexity Low_complexity 1 23 0 1108 162 21 0 chr5 40182197 40182388 -162903144 + L1PB1 LINE L1 5956 6150 -1 21 0 0 0 chr5 40182614 40182635 -162902897 + AT_rich Low_complexity Low_complexity 1 21 0 718 300 112 30 chr5 40183452 40183942 -162901590 - MLT1F LTR MaLR -8 534 22 432 279 211 7 chr5 40184790 40184937 -162900595 - MER5A DNA MER1_type 0 189 13 23 0 0 0 chr5 40185286 40185309 -162900223 + AT_rich Low_complexity Low_complexity 1 23 0 4890 277 45 49 chr5 40185315 40187534 -162897998 + L1M3b LINE L1 12 2238 -4112 2325 145 6 8 chr5 40187534 40187899 -162897633 - THE1B LTR MaLR 0 364 1 10901 111 21 0 chr5 40187899 40189447 -162896085 - THE1B-int LTR MaLR 0 1580 1 2262 152 5 19 chr5 40189447 40189816 -162895716 - THE1B LTR MaLR 0 364 1 4890 277 45 49 chr5 40189816 40190328 -162895204 + L1M3b LINE L1 2235 2426 -3924 240 204 0 20 chr5 40190328 40190377 -162895155 - Alu SINE Alu -72 61 14 682 264 60 27 chr5 40190951 40191237 -162894295 + L1M1 LINE L1 5491 5787 -395 36 23 0 0 chr5 40191240 40191283 -162894249 + AT_rich Low_complexity Low_complexity 1 43 0 9309 106 2 1 chr5 40192146 40193405 -162892127 + THE1B-int LTR MaLR 320 1580 0 2330 147 3 14 chr5 40193405 40193773 -162891759 + THE1B LTR MaLR 1 364 0 366 286 220 16 chr5 40194349 40194531 -162891001 + L2 LINE L2 2856 3074 -239 1040 206 63 120 chr5 40194544 40194927 -162890605 + MLT1A1 LTR MaLR 5 365 0 229 285 131 15 chr5 40194940 40195077 -162890455 + L2 LINE L2 3091 3243 -70 1720 243 56 61 chr5 40195152 40195744 -162889788 - MER92B LTR ERV1 -47 589 1 352 231 0 0 chr5 40195745 40195810 -162889722 + L2 LINE L2 3249 3313 0 181 286 20 0 chr5 40195943 40195992 -162889540 - MIR SINE MIR -19 243 194 198 225 0 0 chr5 40196565 40196605 -162888927 - L2 LINE L2 -17 3255 3216 42280 38 23 1 chr5 40197678 40203699 -162881833 - L1PA3 LINE L1 0 6155 3 361 22 0 0 chr5 40203750 40203795 -162881737 + MADE1 DNA Mariner 3 47 -33 642 209 115 95 chr5 40203820 40204073 -162881459 - MIR SINE MIR -3 259 2 1861 157 3 0 chr5 40204280 40204566 -162880966 - AluJb SINE Alu -25 287 1 2011 179 92 9 chr5 40204832 40205279 -162880253 - Charlie1b DNA MER1_type -4 519 36 30 0 0 0 chr5 40205817 40205847 -162879685 + AT_rich Low_complexity Low_complexity 1 30 0 182 393 89 0 chr5 40205984 40206096 -162879436 - MIR3 SINE MIR -6 202 81 23 33 0 0 chr5 40206265 40206295 -162879237 + AT_rich Low_complexity Low_complexity 1 30 0 502 234 81 5 chr5 40206300 40206509 -162879023 - L1M4 LINE L1 -3044 3102 2878 201 74 0 0 chr5 40206511 40206538 -162878994 + (TG)n Simple_repeat Simple_repeat 1 27 0 5496 194 40 29 chr5 40206634 40206915 -162878617 - L1MC1 LINE L1 -179 6154 5878 2201 112 3 7 chr5 40206915 40207242 -162878290 - AluSq SINE Alu 0 313 1 5496 194 40 29 chr5 40207242 40209227 -162876305 - L1MC1 LINE L1 -455 5878 3859 2519 72 0 0 chr5 40209227 40209532 -162876000 - AluY SINE Alu -6 305 1 5496 194 40 29 chr5 40209532 40209707 -162875825 - L1MC1 LINE L1 -2474 3859 3687 24 0 0 0 chr5 40209707 40209731 -162875801 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr5 40209814 40209846 -162875686 + AT_rich Low_complexity Low_complexity 1 32 0 240 419 73 0 chr5 40209897 40210021 -162875511 - MER91A DNA MER1_type -40 156 24 238 284 32 21 chr5 40210031 40210126 -162875406 - L1M4 LINE L1 -3378 2768 2673 22 0 0 0 chr5 40210184 40210206 -162875326 + AT_rich Low_complexity Low_complexity 1 22 0 300 305 30 6 chr5 40210313 40210477 -162875055 + L1M4 LINE L1 2304 2471 -3675 2139 122 20 29 chr5 40210525 40210869 -162874663 - THE1B LTR MaLR -2 362 22 2108 99 0 0 chr5 40210877 40211159 -162874373 - THE1B-int LTR MaLR -1 1579 1298 3517 82 3 0 chr5 40211173 40211647 -162873885 - THE1B-int LTR MaLR -1112 468 1 2032 126 48 25 chr5 40211647 40212003 -162873529 - THE1B LTR MaLR 0 364 1 653 293 71 36 chr5 40212307 40212560 -162872972 - MIR SINE MIR 0 262 1 1593 173 134 3 chr5 40212649 40212956 -162872576 + MER7A DNA MER2_type 2 346 0 287 405 57 36 chr5 40213296 40213819 -162871713 - L2 LINE L2 -337 2977 2444 727 170 0 0 chr5 40215409 40215515 -162870017 + FRAM SINE Alu 41 146 -30 194 54 0 54 chr5 40215801 40215838 -162869694 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 582 228 23 19 chr5 40215900 40216072 -162869460 + L1MCa LINE L1 1 154 -5891 336 234 0 0 chr5 40216199 40216263 -162869269 + L2 LINE L2 3209 3272 0 744 66 9 0 chr5 40216951 40217057 -162868475 - L1MA8 LINE L1 -4 6287 6181 447 241 0 0 chr5 40217192 40217279 -162868253 - MIR3 SINE MIR -21 187 101 25 51 0 0 chr5 40218128 40218167 -162867365 + AT_rich Low_complexity Low_complexity 1 39 0 206 236 0 14 chr5 40218598 40218670 -162866862 + CT-rich Low_complexity Low_complexity 2 72 0 3077 190 27 2 chr5 40219288 40219877 -162865655 + MER6A DNA MER2_type 1 604 -1 7547 191 91 48 chr5 40222683 40225003 -162860529 - Tigger1 DNA MER2_type 0 2418 1 5109 33 2 0 chr5 40225343 40225945 -162859587 - L1PA3 LINE L1 -3 6152 5550 1685 275 72 13 chr5 40226359 40226778 -162858754 - L1MEc LINE L1 -2697 3518 3125 2278 117 16 42 chr5 40226778 40227163 -162858369 - THE1C LTR MaLR 0 375 1 1685 275 72 13 chr5 40227163 40227605 -162857927 - L1MEc LINE L1 -3090 3125 2606 16527 185 33 31 chr5 40227641 40228922 -162856610 + L1PB2 LINE L1 3 1280 -5587 2111 120 79 15 chr5 40228922 40229264 -162856268 + THE1B LTR MaLR 1 364 0 16527 185 33 31 chr5 40229264 40231551 -162853981 + L1PB2 LINE L1 1280 3561 -3306 2011 142 10 3 chr5 40231551 40231862 -162853670 + AluSq SINE Alu 1 313 0 16527 185 33 31 chr5 40231862 40235177 -162850355 + L1PB2 LINE L1 3561 6864 -3 37 0 0 0 chr5 40235187 40235224 -162850308 + AT_rich Low_complexity Low_complexity 1 37 0 407 213 95 123 chr5 40235224 40235704 -162849828 - L1MEc LINE L1 -3636 2579 2153 1314 179 4 34 chr5 40235779 40236013 -162849519 + THE1B LTR MaLR 1 227 -137 1283 267 73 68 chr5 40236013 40237164 -162848368 - L1MEc LINE L1 -4579 1817 661 241 329 82 7 chr5 40237460 40237606 -162847926 - L1MEc LINE L1 -6027 369 213 2141 131 0 0 chr5 40237741 40238046 -162847486 + AluSx SINE Alu 1 305 -7 191 288 45 0 chr5 40238224 40238290 -162847242 - L2 LINE L2 -18 3254 3186 248 195 12 61 chr5 40238467 40238549 -162846983 + MER112 DNA MER1_type 1 78 -182 234 0 0 0 chr5 40238557 40238583 -162846949 + (CA)n Simple_repeat Simple_repeat 1 26 0 2943 172 111 25 chr5 40238878 40239669 -162845863 + MER21A LTR ERV1 1 891 -40 35 0 0 0 chr5 40239673 40239708 -162845824 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr5 40239914 40239942 -162845590 + AT_rich Low_complexity Low_complexity 1 28 0 2208 110 3 0 chr5 40240124 40240424 -162845108 + AluSc SINE Alu 1 301 -8 1743 184 54 16 chr5 40241852 40242222 -162843310 - MER31B LTR ERV1 0 466 83 207 280 67 27 chr5 40242354 40242429 -162843103 - L2 LINE L2 -7 3265 3188 12060 158 14 56 chr5 40242576 40243537 -162841995 + L1MA4A LINE L1 2660 3660 -2643 2869 3 0 0 chr5 40243537 40243845 -162841687 + AluY SINE Alu 1 308 -3 12060 158 14 56 chr5 40243845 40244595 -162840937 + L1MA4A LINE L1 3660 4440 -1863 696 178 8 0 chr5 40244595 40244713 -162840819 + FLAM_C SINE Alu 1 119 -24 207 100 0 0 chr5 40244714 40244744 -162840788 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 12060 158 14 56 chr5 40244744 40246632 -162838900 + L1MA4A LINE L1 4439 6212 -91 633 193 12 6 chr5 40246632 40246803 -162838729 + CT-rich Low_complexity Low_complexity 2 173 0 1159 212 52 10 chr5 40246805 40247093 -162838439 - AluSx SINE Alu -1 301 2 226 229 33 16 chr5 40247964 40248025 -162837507 + MIR SINE MIR 92 153 -109 2170 86 14 0 chr5 40248855 40249174 -162836358 + AluSg SINE Alu 1 323 0 395 244 126 8 chr5 40249829 40249956 -162835576 + MIR SINE MIR 91 232 -30 363 310 10 35 chr5 40249963 40250160 -162835372 + L1ME LINE L1 5628 5819 -302 651 254 88 20 chr5 40250721 40250925 -162834607 - MIR SINE MIR -12 250 34 22 35 0 0 chr5 40251534 40251563 -162833969 + AT_rich Low_complexity Low_complexity 1 29 0 382 358 62 11 chr5 40251884 40252063 -162833469 - MIR3 SINE MIR -2 206 19 873 187 81 15 chr5 40252449 40252647 -162832885 - MER90 LTR ERV1 -1 613 403 483 226 39 0 chr5 40252635 40252737 -162832795 - MER90 LTR ERV1 -477 137 32 * 216 0 0 0 chr5 40252751 40252775 -162832757 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 827 218 83 9 chr5 40252897 40253113 -162832419 + MER46C DNA MER2_type 3 234 -104 679 247 102 25 chr5 40253290 40253525 -162832007 - MIR SINE MIR 0 262 10 290 305 0 0 chr5 40253999 40254081 -162831451 + CT-rich Low_complexity Low_complexity 2 83 0 2243 102 3 0 chr5 40254096 40254389 -162831143 - AluSg SINE Alu -16 294 1 208 307 0 0 chr5 40254438 40254513 -162831019 + T-rich Low_complexity Low_complexity 1 75 0 31 26 0 0 chr5 40256516 40256554 -162828978 + AT_rich Low_complexity Low_complexity 1 38 0 1824 105 36 69 chr5 40256774 40257080 -162828452 + AluSg SINE Alu 1 296 -14 603 284 21 64 chr5 40257091 40257327 -162828205 - MIR SINE MIR -15 247 22 1833 181 0 0 chr5 40258034 40258344 -162827188 - AluJo SINE Alu 0 312 3 2328 66 23 16 chr5 40258606 40258911 -162826621 - AluY SINE Alu -4 307 1 1389 161 177 27 chr5 40259040 40259413 -162826119 - L1MB8 LINE L1 -1 6177 5749 322 242 0 0 chr5 40259416 40259478 -162826054 + MER2 DNA MER2_type 1 62 -283 2665 102 3 8 chr5 40259481 40259853 -162825679 - THE1B-int LTR MaLR -297 1283 914 1103 103 5 88 chr5 40259847 40259889 -162825643 - THE1B-int LTR MaLR -1182 398 354 * 2414 53 0 0 chr5 40259889 40260171 -162825361 + AluY SINE Alu 21 302 -9 1103 103 5 88 chr5 40260171 40260322 -162825210 - THE1B-int LTR MaLR -1226 354 221 1990 192 51 13 chr5 40260328 40260468 -162825064 + L1M4 LINE L1 5263 5396 -782 2280 118 25 25 chr5 40260468 40260832 -162824700 - THE1B LTR MaLR 0 364 1 1990 192 51 13 chr5 40260832 40261159 -162824373 + L1M4 LINE L1 5396 5748 -430 737 240 71 31 chr5 40261159 40261413 -162824119 - MER2 DNA MER2_type -1 344 81 1678 77 0 5 chr5 40261413 40261635 -162823897 - THE1C-int LTR MaLR -1359 221 1 2302 151 3 11 chr5 40261635 40262013 -162823519 - THE1C LTR MaLR 0 375 1 3287 223 99 38 chr5 40262014 40262418 -162823114 - L1M4 LINE L1 -2986 3658 3280 355 164 16 0 chr5 40262418 40262479 -162823053 - U7 snRNA snRNA -1 62 1 3287 223 99 38 chr5 40262479 40264141 -162821391 - L1M4 LINE L1 -3364 3280 1464 1850 200 55 14 chr5 40264141 40264556 -162820976 - L1MC3 LINE L1 -7 7778 7347 * 4648 237 63 45 chr5 40264549 40264812 -162820720 - L1M4 LINE L1 -5054 1488 1231 3396 131 6 0 chr5 40264812 40265323 -162820209 + MER75 DNA T2_type 1 514 0 4648 237 63 45 chr5 40265323 40266147 -162819385 - L1M4 LINE L1 -5311 1231 366 2305 116 0 3 chr5 40266147 40266458 -162819074 + AluSx SINE Alu 1 310 -2 4648 237 63 45 chr5 40266458 40266820 -162818712 - L1M4 LINE L1 -6176 366 12 348 347 49 0 chr5 40267500 40267644 -162817888 + L2 LINE L2 3122 3272 0 234 256 49 37 chr5 40268115 40268197 -162817335 + L2 LINE L2 3190 3272 0 220 227 210 25 chr5 40268196 40268315 -162817217 + L2 LINE L2 3173 3313 0 * 314 320 62 39 chr5 40268511 40268639 -162816893 - MER91A DNA MER1_type -25 171 41 26 0 0 0 chr5 40270118 40270144 -162815388 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr5 40271273 40271306 -162814226 + AT_rich Low_complexity Low_complexity 1 33 0 645 162 8 0 chr5 40271381 40271498 -162814034 - FLAM_A SINE Alu -5 137 20 190 322 0 17 chr5 40272011 40272070 -162813462 + L2 LINE L2 3213 3270 -2 25 0 0 0 chr5 40272205 40272230 -162813302 + AT_rich Low_complexity Low_complexity 1 25 0 259 313 0 17 chr5 40272381 40272496 -162813036 + MIR SINE MIR 54 166 -96 382 224 172 0 chr5 40272681 40272797 -162812735 - L2 LINE L2 0 3313 3178 962 259 0 26 chr5 40273162 40273390 -162812142 - MIR SINE MIR 0 262 41 24 0 0 0 chr5 40273496 40273520 -162812012 + AT_rich Low_complexity Low_complexity 1 24 0 242 297 0 20 chr5 40274795 40274896 -162810636 + MIR SINE MIR 71 169 -93 1169 149 102 81 chr5 40276579 40276901 -162808631 - MSTB1 LTR MaLR 0 432 104 * 1241 164 41 0 chr5 40276895 40277115 -162808417 - MSTB1 LTR MaLR -203 229 1 513 269 125 12 chr5 40277467 40277673 -162807859 - MIR SINE MIR -2 260 28 1000 153 8 2 chr5 40277830 40278080 -162807452 - AluJb SINE Alu -1 311 1 2005 116 0 0 chr5 40278221 40278498 -162807034 + AluSx SINE Alu 36 312 0 22 0 0 0 chr5 40278660 40278682 -162806850 + AT_rich Low_complexity Low_complexity 1 22 0 208 302 47 35 chr5 40279226 40279312 -162806220 + L2 LINE L2 3183 3269 -3 1243 279 19 65 chr5 40280287 40280750 -162804782 - MLT1J LTR MaLR -34 477 36 2481 68 0 7 chr5 40283119 40283427 -162802105 + AluSg SINE Alu 1 306 -4 2295 84 7 3 chr5 40283432 40283728 -162801804 + AluSq SINE Alu 1 297 -16 22 56 0 0 chr5 40283953 40283989 -162801543 + AT_rich Low_complexity Low_complexity 1 36 0 448 113 134 0 chr5 40284369 40284466 -162801066 + L1MB4 LINE L1 6071 6180 0 873 194 50 0 chr5 40284599 40284779 -162800753 + MER5A DNA MER1_type 1 189 0 280 321 46 9 chr5 40284784 40284893 -162800639 - L2 LINE L2 -1 3312 3200 767 304 133 33 chr5 40285206 40285656 -162799876 - L2 LINE L2 -482 2832 2338 285 330 111 24 chr5 40286802 40287181 -162798351 - L2 LINE L2 -594 2720 2309 374 274 114 51 chr5 40287550 40287725 -162797807 - MIR3 SINE MIR -15 193 8 641 176 20 46 chr5 40288039 40288192 -162797340 - L1PA16 LINE L1 -3 6163 6015 705 278 139 20 chr5 40288864 40289260 -162796272 - HAL1b LINE L1 -613 735 293 683 274 28 39 chr5 40289277 40289532 -162796000 - L1MC4 LINE L1 -1070 6972 6721 595 181 13 0 chr5 40290746 40290901 -162794631 + (TA)n Simple_repeat Simple_repeat 1 157 0 6493 86 23 13 chr5 40290925 40292374 -162793158 - L1PA13 LINE L1 -4 6159 4699 21 71 0 0 chr5 40292491 40292533 -162792999 + AT_rich Low_complexity Low_complexity 1 42 0 408 345 105 61 chr5 40292578 40293167 -162792365 + L2 LINE L2 2040 2654 -660 204 285 70 51 chr5 40293609 40293767 -162791765 + L2 LINE L2 3077 3237 -76 798 171 0 13 chr5 40293792 40293907 -162791625 + GA-rich Low_complexity Low_complexity 1 116 -441 1856 126 41 4 chr5 40293907 40294177 -162791355 + AluSg SINE Alu 1 280 -30 798 171 0 13 chr5 40294177 40294357 -162791175 + GA-rich Low_complexity Low_complexity 116 557 0 530 299 87 13 chr5 40294528 40294759 -162790773 - MIR SINE MIR 0 262 15 329 125 31 0 chr5 40294960 40295024 -162790508 + GA-rich Low_complexity Low_complexity 4 69 0 378 191 83 0 chr5 40295578 40295662 -162789870 - MIR SINE MIR -101 161 71 933 198 29 0 chr5 40297003 40297210 -162788322 + L1MD1 LINE L1 4970 5182 -964 * 4960 172 37 6 chr5 40297201 40298218 -162787314 + L1MD1 LINE L1 5120 6174 -68 1104 125 40 20 chr5 40298585 40298785 -162786747 - L1MB4 LINE L1 -151 6029 5826 293 398 85 31 chr5 40298842 40299159 -162786373 + L2 LINE L2 2927 3260 -12 384 329 50 21 chr5 40299236 40299376 -162786156 + MIR3 SINE MIR 38 181 -27 234 369 7 35 chr5 40300284 40300425 -162785107 + MIR SINE MIR 31 167 -95 933 253 83 29 chr5 40303577 40303849 -162781683 - MLT1A2 LTR MaLR 0 467 143 2312 49 0 0 chr5 40303849 40304136 -162781396 - L1PA4 LINE L1 -8 6147 5861 933 253 83 29 chr5 40304136 40304288 -162781244 - MLT1A2 LTR MaLR -324 143 1 1108 63 142 98 chr5 40304994 40305199 -162780333 - AluY SINE Alu -13 298 85 2202 104 0 0 chr5 40305919 40306208 -162779324 + AluSx SINE Alu 9 297 -15 332 248 173 38 chr5 40309980 40310113 -162775419 - L2 LINE L2 -4 3268 3118 447 233 64 121 chr5 40311024 40311273 -162774259 - MER112 DNA MER1_type -24 236 2 2098 141 0 0 chr5 40312807 40313111 -162772421 + AluSx SINE Alu 1 304 -8 29 28 0 0 chr5 40313516 40313552 -162771980 + AT_rich Low_complexity Low_complexity 1 36 0 252 366 40 0 chr5 40314098 40314199 -162771333 - MIR SINE MIR -59 203 99 457 317 93 39 chr5 40316129 40316324 -162769208 - L1MC/D LINE L1 -748 5398 5215 189 107 0 0 chr5 40316324 40316352 -162769180 + (TA)n Simple_repeat Simple_repeat 2 29 0 457 317 93 39 chr5 40316352 40316793 -162768739 - L1MC/D LINE L1 -931 5215 4783 420 57 0 0 chr5 40316932 40316985 -162768547 - Alu SINE Alu -22 290 238 1091 75 0 0 chr5 40316986 40317119 -162768413 - AluSg SINE Alu -177 133 1 289 274 74 93 chr5 40317428 40317698 -162767834 - LTR67 LTR ERVL -21 536 272 335 301 71 55 chr5 40317700 40318079 -162767453 - L1MC/D LINE L1 -1975 4171 3787 585 318 69 8 chr5 40318088 40318333 -162767199 + MIR SINE MIR 2 261 -1 477 0 0 0 chr5 40519970 40520023 -162565509 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 237 276 0 53 chr5 40522400 40522476 -162563056 - MIR SINE MIR -109 153 82 30 0 0 0 chr5 40523347 40523377 -162562155 + AT_rich Low_complexity Low_complexity 1 30 0 215 184 41 20 chr5 40523475 40523524 -162562008 + GA-rich Low_complexity Low_complexity 4 53 0 29 0 0 0 chr5 40523527 40523556 -162561976 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr5 40525269 40525298 -162560234 + AT_rich Low_complexity Low_complexity 1 29 0 193 304 76 0 chr5 40525541 40525633 -162559899 - MIR SINE MIR 0 262 164 717 199 6 60 chr5 40525692 40525858 -162559674 + MIR SINE MIR 84 240 -22 2378 74 0 3 chr5 40526512 40526808 -162558724 - AluY SINE Alu -14 297 3 209 175 0 35 chr5 40527879 40527936 -162557596 + T-rich Low_complexity Low_complexity 6 60 0 1292 165 47 88 chr5 40527938 40528235 -162557297 - AluJb SINE Alu -23 289 5 2236 107 0 3 chr5 40528760 40529060 -162556472 + AluSx SINE Alu 1 299 -13 571 258 17 88 chr5 40529906 40530146 -162555386 + MIR SINE MIR 26 248 -14 22 0 0 0 chr5 40532839 40532861 -162552671 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr5 40534443 40534473 -162551059 + AT_rich Low_complexity Low_complexity 1 30 0 209 228 105 18 chr5 40534969 40535026 -162550506 + L2 LINE L2 3210 3271 -1 375 212 0 0 chr5 40536067 40536133 -162549399 + MER5B DNA MER1_type 1 66 -112 456 19 0 0 chr5 40536172 40536225 -162549307 + (CA)n Simple_repeat Simple_repeat 2 54 0 255 346 29 29 chr5 40536449 40536657 -162548875 - L2 LINE L2 -1377 1937 1730 534 220 77 6 chr5 40537827 40537995 -162547537 - Charlie7 DNA MER1_type -1 2611 2432 332 185 98 11 chr5 40537981 40538073 -162547459 - Charlie7 DNA MER1_type -2507 105 6 * 358 363 44 11 chr5 40538409 40538591 -162546941 + MIR3 SINE MIR 11 198 -10 2391 43 7 20 chr5 40538782 40539082 -162546450 + AluY SINE Alu 1 296 -15 318 26 0 0 chr5 40539776 40539815 -162545717 + (TG)n Simple_repeat Simple_repeat 1 39 0 273 319 187 18 chr5 40539921 40540087 -162545445 + MIR SINE MIR 48 241 -21 219 277 53 0 chr5 40540269 40540363 -162545169 + MIR SINE MIR 33 131 -77 * 1701 270 98 11 chr5 40540333 40540954 -162544578 + L2 LINE L2 2363 3033 -239 1852 133 0 11 chr5 40541078 40541349 -162544183 - AluSq SINE Alu -45 268 1 353 252 29 29 chr5 40541516 40541619 -162543913 + MER5A DNA MER1_type 4 106 -83 2093 137 10 0 chr5 40543686 40543979 -162541553 + AluSx SINE Alu 1 296 -16 213 224 112 121 chr5 40544256 40544372 -162541160 + L2 LINE L2 3183 3297 -16 251 324 44 29 chr5 40544599 40544735 -162540797 + L2 LINE L2 2917 3054 -218 935 289 154 14 chr5 40544814 40545412 -162540120 - L2 LINE L2 0 3313 2634 186 209 0 0 chr5 40548067 40548110 -162537422 + (CATA)n Simple_repeat Simple_repeat 4 46 0 871 254 119 44 chr5 40548118 40548570 -162536962 - L1ME4a LINE L1 -52 6069 5584 44 0 0 0 chr5 40550631 40550675 -162534857 + AT_rich Low_complexity Low_complexity 1 44 0 3717 54 0 9 chr5 40550702 40551144 -162534388 - L1PA5 LINE L1 0 6154 5717 330 250 0 48 chr5 40551158 40551262 -162534270 - L1MC4 LINE L1 -1339 6703 6605 208 209 22 0 chr5 40551262 40551353 -162534179 + (TA)n Simple_repeat Simple_repeat 1 93 0 710 286 94 0 chr5 40551406 40551640 -162533892 + MIR SINE MIR 5 260 -2 2122 79 0 4 chr5 40552670 40552935 -162532597 - AluSq SINE Alu -19 294 31 251 343 37 0 chr5 40553005 40553113 -162532419 - MER20 DNA MER1_type -18 201 90 194 257 105 57 chr5 40553178 40553283 -162532249 + L2 LINE L2 3145 3254 -18 232 266 0 0 chr5 40553543 40553607 -162531925 + A-rich Low_complexity Low_complexity 1 64 0 717 259 80 42 chr5 40553933 40554172 -162531360 + MIR SINE MIR 15 262 0 514 78 0 122 chr5 40554182 40554221 -162531311 + MADE1 DNA Mariner 1 25 -55 2142 81 3 62 chr5 40554221 40554541 -162530991 - AluY SINE Alu -10 301 1 514 78 0 122 chr5 40554541 40554591 -162530941 + MADE1 DNA Mariner 25 79 -1 1710 196 3 0 chr5 40555742 40556043 -162529489 + AluJo SINE Alu 1 302 -10 280 281 235 7 chr5 40556691 40556844 -162528688 - MIR SINE MIR -23 239 52 2429 266 86 14 chr5 40557723 40558831 -162526701 + L2 LINE L2 2076 3262 -51 601 293 35 34 chr5 40559763 40560010 -162525522 - MIR SINE MIR -10 252 3 1415 253 78 27 chr5 40560445 40560685 -162524847 - L1M4 LINE L1 -2174 3972 3746 567 31 0 0 chr5 40560685 40560750 -162524782 - L1PA5 LINE L1 -7 6147 6083 1415 253 78 27 chr5 40560750 40561138 -162524394 - L1M4 LINE L1 -2400 3746 3312 460 285 66 96 chr5 40561372 40561768 -162523764 + L3 LINE CR1 419 802 -775 785 266 66 20 chr5 40561794 40562038 -162523494 - MIR SINE MIR 0 262 8 447 302 90 62 chr5 40562031 40562628 -162522904 + L3 LINE CR1 828 1493 -84 * 257 254 28 14 chr5 40562941 40563012 -162522520 + L3 LINE CR1 1495 1566 -11 215 332 45 80 chr5 40563021 40563398 -162522134 + L2 LINE L2 2382 2745 -569 1750 193 0 0 chr5 40563404 40563694 -162521838 + AluJo SINE Alu 1 290 -22 21 0 0 0 chr5 40563694 40563715 -162521817 + AT_rich Low_complexity Low_complexity 1 21 0 851 235 6 0 chr5 40563716 40563882 -162521650 + AluJb SINE Alu 134 300 -12 303 104 0 0 chr5 40564199 40564247 -162521285 + (TG)n Simple_repeat Simple_repeat 1 48 0 808 269 43 35 chr5 40565401 40565657 -162519875 - MIR SINE MIR -3 259 2 1971 142 3 3 chr5 40565801 40566090 -162519442 + AluSx SINE Alu 1 289 -23 280 282 105 8 chr5 40566583 40566707 -162518825 - Charlie8 DNA MER1_type -1987 430 295 2110 121 3 0 chr5 40566715 40567038 -162518494 + AluSp SINE Alu 1 324 0 445 231 22 0 chr5 40567140 40567231 -162518301 - Charlie8 DNA MER1_type -2278 139 47 271 309 67 138 chr5 40567391 40567601 -162517931 - MER91A DNA MER1_type 0 196 2 2363 95 0 0 chr5 40568000 40568304 -162517228 + AluSc SINE Alu 1 304 -5 186 278 93 0 chr5 40568927 40568981 -162516551 + L3b LINE CR1 1274 1332 -251 619 243 130 0 chr5 40570845 40571007 -162514525 - MER5A DNA MER1_type 0 189 4 232 287 37 37 chr5 40571028 40571164 -162514368 + L1M2 LINE L1 5524 5659 -641 218 159 45 0 chr5 40571167 40571211 -162514321 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 1930 152 35 0 chr5 40571735 40572024 -162513508 + AluSx SINE Alu 1 299 -13 2259 120 0 0 chr5 40572058 40572367 -162513165 - AluSx SINE Alu -3 309 1 306 0 0 0 chr5 40572414 40572448 -162513084 + (TA)n Simple_repeat Simple_repeat 1 34 0 482 350 41 16 chr5 40576517 40576763 -162508769 + L3b LINE CR1 1112 1363 -220 2407 100 0 0 chr5 40576773 40577084 -162508448 - AluSx SINE Alu -1 311 1 206 326 10 77 chr5 40577503 40577631 -162507901 + MIR3 SINE MIR 46 162 -46 261 146 0 0 chr5 40577662 40577710 -162507822 + (ATG)n Simple_repeat Simple_repeat 1 48 0 349 264 200 0 chr5 40578987 40579127 -162506405 - MIR SINE MIR 0 262 95 315 328 50 0 chr5 40579431 40579550 -162505982 + MIR SINE MIR 77 201 -61 2227 119 0 0 chr5 40579928 40580231 -162505301 - AluSq SINE Alu -10 303 1 982 202 44 39 chr5 40581487 40581849 -162503683 + L1M4 LINE L1 3327 3690 -2456 4591 107 10 0 chr5 40581849 40582523 -162503009 - LOR1-int LTR ERV1 -3984 4136 3456 1497 141 11 38 chr5 40582523 40582878 -162502654 - MER4A LTR ERV1 0 664 261 669 91 0 10 chr5 40582878 40582977 -162502555 - MER4A LTR ERV1 -566 98 1 1488 113 17 0 chr5 40582977 40583207 -162502325 - LOR1-int LTR ERV1 -4661 3459 3226 710 100 0 0 chr5 40583207 40583307 -162502225 - AluSg/x SINE Alu -13 299 200 2930 94 16 0 chr5 40583313 40583758 -162501774 - LOR1-int LTR ERV1 -4925 3195 2744 286 170 40 10 chr5 40583963 40584063 -162501469 + (TA)n Simple_repeat Simple_repeat 1 103 0 375 123 0 15 chr5 40584153 40584218 -162501314 - MER4A LTR ERV1 -566 98 35 267 171 0 29 chr5 40584195 40584265 -162501267 + LTR66 LTR ERVL 376 443 -167 * 231 214 0 0 chr5 40584265 40584307 -162501225 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 337 189 44 56 chr5 40584313 40584403 -162501129 + L1MC4 LINE L1 6614 6702 -1340 13371 94 50 13 chr5 40584407 40586619 -162498913 - LOR1b-int LTR ERV1 -5477 2643 350 2522 113 25 0 chr5 40586621 40586985 -162498547 - THE1C LTR MaLR -2 373 1 9891 113 28 19 chr5 40586991 40588173 -162497359 - THE1C-int LTR MaLR -6 1574 372 2061 141 40 0 chr5 40588173 40588471 -162497061 + AluSx SINE Alu 1 310 -2 9891 113 28 19 chr5 40588471 40588847 -162496685 - THE1C-int LTR MaLR -1208 372 1 2464 115 19 0 chr5 40588847 40589211 -162496321 - THE1C LTR MaLR 0 375 5 1843 179 23 14 chr5 40589214 40589746 -162495786 - LOR1b-int LTR ERV1 -7704 416 1 1580 142 12 0 chr5 40589746 40589999 -162495533 - LOR1b LTR ERV1 0 461 206 2015 154 6 12 chr5 40590128 40590458 -162495074 - MER1B DNA MER1_type -8 331 4 286 253 0 0 chr5 40590504 40590579 -162494953 + L1M4 LINE L1 3969 4043 -2103 1797 269 40 10 chr5 40590680 40591360 -162494172 + L1M4 LINE L1 4256 4955 -1191 2089 134 0 0 chr5 40591369 40591660 -162493872 - AluSx SINE Alu -21 291 1 518 244 75 25 chr5 40592735 40592936 -162492596 + MLT1J LTR MaLR 5 215 -296 1427 126 24 5 chr5 40593462 40593669 -162491863 - AluJb SINE Alu -17 295 85 246 32 0 0 chr5 40594600 40594631 -162490901 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 1076 180 11 6 chr5 40595047 40595230 -162490302 - AluJo SINE Alu -128 184 1 920 242 21 0 chr5 40596975 40597169 -162488363 - MER58A DNA MER1_type -1 223 26 24 32 0 0 chr5 40597208 40597239 -162488293 + AT_rich Low_complexity Low_complexity 1 31 0 263 268 102 51 chr5 40597274 40597431 -162488101 - L2 LINE L2 -12 3301 3137 2164 136 0 7 chr5 40597529 40597837 -162487695 + AluSx SINE Alu 1 306 -6 223 253 0 33 chr5 40598100 40598191 -162487341 + CT-rich Low_complexity Low_complexity 1 88 0 326 302 12 0 chr5 40598702 40598788 -162486744 + L2 LINE L2 3213 3299 -14 21 36 0 0 chr5 40599744 40599772 -162485760 + AT_rich Low_complexity Low_complexity 1 28 0 184 331 83 8 chr5 40600043 40600164 -162485368 - MIR SINE MIR -123 139 10 668 267 56 6 chr5 40602496 40602676 -162482856 + MIR SINE MIR 32 220 -42 1860 225 72 19 chr5 40605059 40606115 -162479417 - L1ME2 LINE L1 -12 6152 5008 328 43 0 0 chr5 40606116 40606162 -162479370 - L1PA3 LINE L1 0 6155 6110 27911 46 5 2 chr5 40606263 40609969 -162475563 - L1P LINE L1 -1014 5132 1419 296 263 86 7 chr5 40610115 40610267 -162475265 - L1ME2 LINE L1 -2755 3391 3228 203 116 47 0 chr5 40611205 40611248 -162474284 + CT-rich Low_complexity Low_complexity 4 48 0 1410 202 55 55 chr5 40611347 40611728 -162473804 - MLT2C2 LTR ERVL -2 462 82 251 258 0 30 chr5 40612783 40612849 -162472683 + MER91 DNA MER1_type 119 182 -8 189 265 0 0 chr5 40612990 40613039 -162472493 + MIR SINE MIR 101 149 -113 385 237 92 27 chr5 40614018 40614410 -162471122 - MLT1J2 LTR MaLR 0 446 1 2114 109 3 0 chr5 40615663 40615946 -162469586 - AluSx SINE Alu -23 289 6 22 35 0 0 chr5 40615950 40615979 -162469553 + AT_rich Low_complexity Low_complexity 1 29 0 182 298 0 0 chr5 40616095 40616152 -162469380 + L3 LINE CR1 1362 1418 -159 418 297 113 57 chr5 40616161 40616572 -162468960 + L1MC/D LINE L1 5144 5576 -757 385 291 24 0 chr5 40618764 40618891 -162466641 - MIR3 SINE MIR -49 159 30 258 273 0 30 chr5 40620196 40620295 -162465237 + GA-rich Low_complexity Low_complexity 4 99 0 464 291 46 70 chr5 40620295 40620555 -162464977 - MIR SINE MIR 0 262 14 434 275 0 8 chr5 40620603 40620723 -162464809 + MER94 DNA DNA 5 123 -11 212 327 0 0 chr5 40621755 40621810 -162463722 - L2 LINE L2 -13 3259 3205 23 0 0 0 chr5 40621884 40621907 -162463625 + AT_rich Low_complexity Low_complexity 1 23 0 316 270 99 0 chr5 40622128 40622239 -162463293 - MIR SINE MIR -82 180 59 430 170 21 32 chr5 40623125 40623219 -162462313 + Charlie3 DNA MER1_type 2620 2712 0 217 189 11 42 chr5 40623813 40623908 -162461624 + CT-rich Low_complexity Low_complexity 1 92 0 2177 233 71 43 chr5 40623908 40624197 -162461335 - MLT1E LTR MaLR -42 551 272 216 86 0 0 chr5 40624197 40624232 -162461300 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1994 109 3 21 chr5 40624233 40624518 -162461014 - AluSx SINE Alu -32 280 1 2177 233 71 43 chr5 40624518 40624762 -162460770 - MLT1E LTR MaLR -320 273 1 2581 178 30 19 chr5 40624866 40625328 -162460204 + MLT1C LTR MaLR 1 467 0 460 250 48 125 chr5 40626043 40626355 -162459177 + L2 LINE L2 2922 3209 -104 192 379 35 9 chr5 40626555 40626671 -162458861 + L2 LINE L2 2639 2757 -557 2421 139 123 3 chr5 40626681 40627063 -162458469 + MSTA LTR MaLR 1 428 0 2115 210 42 36 chr5 40627088 40627587 -162457945 - MLT1D LTR MaLR 0 505 4 321 354 63 56 chr5 40627663 40627948 -162457584 + L2 LINE L2 2986 3272 0 24 0 0 0 chr5 40628931 40628955 -162456577 + AT_rich Low_complexity Low_complexity 1 24 0 561 308 25 14 chr5 40628964 40629243 -162456289 + L1ME4a LINE L1 4023 4304 -1842 385 281 149 61 chr5 40629442 40629980 -162455552 + L1ME4a LINE L1 4639 5223 -923 232 354 68 14 chr5 40630033 40630313 -162455219 + L1ME4a LINE L1 5280 5574 -588 233 170 0 19 chr5 40630401 40630454 -162455078 + L1ME4a LINE L1 5768 5819 -302 390 197 87 94 chr5 40630795 40630922 -162454610 - MLT1H LTR MaLR 0 549 424 617 270 143 44 chr5 40630978 40631271 -162454261 - MLT1H LTR MaLR -221 328 7 268 200 0 0 chr5 40631847 40631902 -162453630 + L1ME4a LINE L1 5956 6010 -111 408 241 0 0 chr5 40631990 40632106 -162453426 + (TA)n Simple_repeat Simple_repeat 1 116 0 228 140 40 40 chr5 40632107 40632157 -162453375 + L1MD3 LINE L1 6619 6668 -1327 26 64 0 0 chr5 40632162 40632209 -162453323 + AT_rich Low_complexity Low_complexity 1 47 0 291 246 14 101 chr5 40633003 40633141 -162452391 + L2 LINE L2 3187 3312 -1 218 245 19 0 chr5 40633140 40633193 -162452339 + L2 LINE L2 2283 2336 -978 * 243 306 14 0 chr5 40633676 40633748 -162451784 - MER21A LTR ERV1 -127 804 732 1228 179 4 52 chr5 40633828 40634083 -162451449 - MLT2C2 LTR ERVL 0 464 232 774 150 0 21 chr5 40634114 40634254 -162451278 - MLT1A1 LTR MaLR -228 137 1 2186 222 116 21 chr5 40634331 40634993 -162450539 + MER50 LTR ERV1 10 734 0 4470 134 15 126 chr5 40635336 40636888 -162448644 - pTR5 LTR ERV1 0 2606 1524 466 254 154 110 chr5 40637216 40637645 -162447887 + MLT1J2 LTR MaLR 2 449 -1 2256 73 0 57 chr5 40638248 40638565 -162446967 + AluY SINE Alu 1 299 -12 233 125 0 42 chr5 40639373 40639421 -162446111 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 452 163 12 0 chr5 40640015 40640095 -162445437 - MER3 DNA MER1_type 0 209 129 201 217 52 9 chr5 40640095 40640210 -162445322 + (TA)n Simple_repeat Simple_repeat 2 121 0 863 191 0 0 chr5 40640274 40640421 -162445111 - MER3 DNA MER1_type -62 147 1 2034 117 3 7 chr5 40641260 40641596 -162443936 - AluSq SINE Alu 0 335 1 23 0 0 0 chr5 40641854 40641877 -162443655 + AT_rich Low_complexity Low_complexity 1 23 0 2003 147 3 3 chr5 40643942 40644254 -162441278 + AluSx SINE Alu 1 312 0 225 239 141 0 chr5 40644768 40644839 -162440693 + L2 LINE L2 3233 3313 0 198 0 0 0 chr5 40646207 40646229 -162439303 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1922 118 25 21 chr5 40646867 40647171 -162438361 - AluSx SINE Alu 0 305 1 359 335 17 39 chr5 40649227 40649406 -162436126 + MER5A DNA MER1_type 2 176 -13 25 0 0 0 chr5 40649603 40649628 -162435904 + AT_rich Low_complexity Low_complexity 1 25 0 421 228 34 114 chr5 40649771 40650008 -162435524 + MLT1J LTR MaLR 101 318 -193 29 0 0 0 chr5 40650749 40650778 -162434754 + AT_rich Low_complexity Low_complexity 1 29 0 185 286 65 0 chr5 40651432 40651509 -162434023 + MIR SINE MIR 172 253 -9 336 337 26 26 chr5 40651597 40651768 -162433764 - MER5A DNA MER1_type -4 185 4 21 0 0 0 chr5 40652924 40652945 -162432587 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr5 40654148 40654172 -162431360 + (CA)n Simple_repeat Simple_repeat 1 24 0 1167 202 85 8 chr5 40654174 40654432 -162431100 + L1MC3 LINE L1 5909 6186 -1599 * 3619 186 66 5 chr5 40654407 40655160 -162430372 + L1MC3 LINE L1 6845 7643 -142 43321 50 3 1 chr5 40655181 40661318 -162424214 + L1PA4 LINE L1 1 6152 -3 5426 94 42 7 chr5 40661321 40662053 -162423479 + L1PA7 LINE L1 5384 6141 -13 189 0 0 0 chr5 40662619 40662640 -162422892 + (TA)n Simple_repeat Simple_repeat 2 22 0 387 212 25 76 chr5 40664268 40664386 -162421146 - MIR3 SINE MIR -31 177 66 303 273 5 127 chr5 40665191 40665411 -162420121 + MIR3 SINE MIR 16 208 0 2811 178 34 2 chr5 40666853 40667348 -162418184 + L1MB5 LINE L1 5656 6166 -8 568 132 28 0 chr5 40667365 40667471 -162418061 + L1MA8 LINE L1 6183 6291 0 458 242 11 0 chr5 40667530 40667625 -162417907 - MIR SINE MIR -86 176 81 400 286 140 12 chr5 40667631 40667802 -162417730 - MIR3 SINE MIR 0 208 16 258 351 36 56 chr5 40668702 40668953 -162416579 - L2 LINE L2 -189 3083 2838 2412 81 3 0 chr5 40669237 40669545 -162415987 + AluSx SINE Alu 1 309 -3 1357 182 40 121 chr5 40671373 40671769 -162413763 - MLT1A1 LTR MaLR -1 364 1 1053 191 9 61 chr5 40672036 40672266 -162413266 + MER20 DNA MER1_type 2 219 0 181 329 0 12 chr5 40672281 40672363 -162413169 + MER5B DNA MER1_type 28 108 -70 288 351 95 24 chr5 40672550 40672718 -162412814 - MIR SINE MIR -35 227 48 2304 84 7 26 chr5 40672722 40673030 -162412502 - AluSg SINE Alu -8 302 1 27 0 0 0 chr5 40673813 40673840 -162411692 + AT_rich Low_complexity Low_complexity 1 27 0 810 256 42 0 chr5 40673896 40674064 -162411468 - MER96 DNA MER1_type 0 175 1 205 297 242 0 chr5 40674064 40674155 -162411377 - L2 LINE L2 -7 3306 3194 334 287 60 48 chr5 40674348 40674613 -162410919 + MLT1L LTR MaLR 237 615 0 299 299 97 29 chr5 40675824 40676087 -162409445 - MLT1L LTR MaLR -227 284 1 860 271 0 0 chr5 40676394 40676593 -162408939 + MER58A DNA MER1_type 26 224 0 307 269 67 42 chr5 40676743 40676899 -162408633 - MIR SINE MIR -67 141 30 1360 278 91 35 chr5 40677839 40678332 -162407200 + LTR33 LTR ERVL 1 521 0 2026 150 0 7 chr5 40678773 40679073 -162406459 - AluJo SINE Alu -12 300 3 484 322 184 43 chr5 40679116 40680960 -162404572 + L2 LINE L2 906 3009 -263 186 296 28 70 chr5 40681042 40681113 -162404419 + L2 LINE L2 3153 3220 -52 387 0 0 0 chr5 40682835 40682878 -162402654 + (CA)n Simple_repeat Simple_repeat 2 44 0 2710 281 97 30 chr5 40683554 40684714 -162400818 + ERVL LTR ERVL 87 1324 -4440 2560 87 43 0 chr5 40684763 40685109 -162400423 + L1PA11 LINE L1 5808 6168 -6 429 257 43 45 chr5 40685204 40685499 -162400033 + MERVL-C1 LTR ERVL 5064 5427 -337 504 171 86 26 chr5 40685544 40685661 -162399871 + MERVL-C1 LTR ERVL 5535 5658 -106 715 194 44 44 chr5 40685674 40685952 -162399580 + MLT2C1 LTR ERVL 27 395 -2 957 279 29 49 chr5 40685959 40686306 -162399226 + L1M4b LINE L1 162 501 -5783 1549 205 92 49 chr5 40686352 40686777 -162398755 - MST-int LTR MaLR 0 1651 1209 340 22 22 0 chr5 40687317 40687362 -162398170 + MADE1 DNA Mariner 1 46 -34 2876 147 6 51 chr5 40687592 40688081 -162397451 - LTR24 LTR ERV1 0 467 1 2141 118 10 0 chr5 40688631 40688928 -162396604 - AluSx SINE Alu -12 300 1 202 311 22 72 chr5 40688929 40689109 -162396423 + MIR3 SINE MIR 36 206 -2 2190 157 48 45 chr5 40690391 40690832 -162394700 - MER65A LTR ERV1 0 445 4 751 218 0 0 chr5 40691302 40691435 -162394097 + FLAM_A SINE Alu 1 133 0 456 263 53 53 chr5 40691733 40691942 -162393590 - L2 LINE L2 0 3313 3105 487 226 57 85 chr5 40691993 40692209 -162393323 + L1MC5 LINE L1 7614 7824 -137 2321 137 117 10 chr5 40692209 40692595 -162392937 - MSTA LTR MaLR -1 427 1 487 226 57 85 chr5 40692595 40692626 -162392906 + L1MC5 LINE L1 7824 7854 -107 2393 59 0 62 chr5 40692645 40692968 -162392564 - AluY SINE Alu -8 303 1 3600 252 106 67 chr5 40693175 40695014 -162390518 - L1MC4 LINE L1 -133 7769 5765 238 319 61 27 chr5 40695006 40695382 -162390150 - L1MC4 LINE L1 -852 5294 4906 * 253 368 109 47 chr5 40695382 40695784 -162389748 - L2 LINE L2 -42 3230 2804 575 305 77 48 chr5 40698376 40698793 -162386739 - L2 LINE L2 0 3313 2885 1568 214 14 103 chr5 40701112 40701705 -162383827 - L1M4 LINE L1 -3293 2853 2314 306 297 9 63 chr5 40702523 40702634 -162382898 + L1M4b LINE L1 540 644 -5740 1038 252 125 34 chr5 40702669 40703211 -162382321 + L1M4b LINE L1 777 1433 -4870 * 1896 240 46 43 chr5 40703202 40703853 -162381679 + L1 LINE L1 4210 4862 -1284 4606 153 88 16 chr5 40703859 40704629 -162380903 - LTR1B LTR ERV1 0 826 1 16908 141 28 36 chr5 40704629 40707415 -162378117 - HUERS-P2 LTR ERV1 0 3088 325 886 171 6 34 chr5 40707418 40707593 -162377939 + L1MB3 LINE L1 6011 6180 -3 387 252 61 0 chr5 40708239 40708354 -162377178 + MER5B DNA MER1_type 1 122 -56 480 266 79 0 chr5 40708593 40708732 -162376800 - MER96 DNA MER1_type? -5 170 21 21 36 0 0 chr5 40709371 40709399 -162376133 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr5 40709934 40709957 -162375575 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chr5 40710388 40710432 -162375100 + AT_rich Low_complexity Low_complexity 1 44 0 265 232 21 0 chr5 40711280 40711375 -162374157 + (TCCA)n Simple_repeat Simple_repeat 4 100 0 309 352 14 21 chr5 40711837 40711979 -162373553 - MIR SINE MIR -102 160 20 601 263 16 27 chr5 40712127 40712313 -162373219 + LTR52 LTR ERVL 1 184 -237 1519 275 33 31 chr5 40712324 40712779 -162372753 + HERVL74 LTR ERVL 212 667 -2889 2858 263 45 13 chr5 40713026 40713337 -162372195 + HERVL74 LTR ERVL 998 1298 -2279 2455 91 46 70 chr5 40713337 40713559 -162371973 - THE1B LTR MaLR 0 364 153 2255 101 0 10 chr5 40713559 40713855 -162371677 + AluSc SINE Alu 1 293 -16 2455 91 46 70 chr5 40713855 40714005 -162371527 - THE1B LTR MaLR -211 153 1 2858 263 45 13 chr5 40714005 40714762 -162370770 + HERVL74 LTR ERVL 1298 2095 -1482 360 64 0 0 chr5 40714904 40714951 -162370581 + (CA)n Simple_repeat Simple_repeat 2 48 0 1504 266 51 72 chr5 40714956 40715585 -162369947 + L1M4b LINE L1 113 728 -6131 1711 180 6 49 chr5 40715596 40715946 -162369586 + MLT2C1 LTR ERVL 4 338 -59 360 0 0 0 chr5 40715947 40715987 -162369545 + (TG)n Simple_repeat Simple_repeat 2 41 0 1490 268 94 9 chr5 40716144 40716600 -162368932 + ERVL-C1 LTR ERVL 211 705 -5059 3102 256 73 11 chr5 40716679 40718362 -162367170 + ERVL-C1 LTR ERVL 880 2769 -2995 6615 201 9 15 chr5 40718363 40719121 -162366411 + ERVL-C1 LTR ERVL 3887 4635 -1129 1184 40 7 14 chr5 40719121 40719294 -162366238 - L1PA5 LINE L1 0 6154 6008 6615 201 9 15 chr5 40719294 40719817 -162365715 + ERVL-C1 LTR ERVL 4635 5160 -604 496 197 96 50 chr5 40719817 40720010 -162365522 + L1M3 LINE L1 5465 5661 -512 1771 185 20 0 chr5 40720010 40720313 -162365219 + AluJo SINE Alu 1 309 -3 496 197 96 50 chr5 40720313 40720326 -162365206 + L1M3 LINE L1 5661 5672 -501 951 100 17 22 chr5 40720326 40720378 -162365154 + (GAAA)n Simple_repeat Simple_repeat 1 230 0 951 100 17 22 chr5 40720378 40720558 -162364974 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1182 225 47 63 chr5 40720626 40720813 -162364719 + L1ME1 LINE L1 5678 5866 -300 2325 167 64 17 chr5 40720813 40721220 -162364312 + MSTB LTR MaLR 1 426 0 1182 225 47 63 chr5 40721220 40721477 -162364055 + L1ME1 LINE L1 5866 6115 -51 2021 131 3 3 chr5 40721487 40721778 -162363754 - AluSx SINE Alu -10 302 12 2069 132 73 51 chr5 40721780 40722136 -162363396 - THE1B LTR MaLR 0 364 1 3525 109 2 0 chr5 40722136 40722615 -162362917 - THE1B-int LTR MaLR 0 1580 1101 3988 83 59 16 chr5 40722617 40723193 -162362339 - THE1B-int LTR MaLR -979 601 1 2254 121 72 26 chr5 40723193 40723541 -162361991 - THE1B LTR MaLR 0 364 1 557 309 193 15 chr5 40723653 40724058 -162361474 + L1MEc LINE L1 49 525 -5871 1000 144 13 0 chr5 40724645 40724798 -162360734 + L1MA4 LINE L1 5 159 -5169 8047 153 33 29 chr5 40724801 40726223 -162359309 + MSTA-int LTR MaLR 153 1580 0 1962 185 123 5 chr5 40726223 40726606 -162358926 + MSTA LTR MaLR 1 428 0 5414 183 16 14 chr5 40726606 40727752 -162357780 + L1MA4 LINE L1 3424 4571 -1757 278 291 40 53 chr5 40727862 40727923 -162357609 + MIR SINE MIR 103 163 -99 2166 133 0 0 chr5 40727923 40728223 -162357309 - AluSx SINE Alu -12 300 1 278 291 40 53 chr5 40728223 40728312 -162357220 + MIR SINE MIR 163 251 -11 5172 177 43 7 chr5 40728518 40730418 -162355114 + L1MA4 LINE L1 4527 6476 -6 324 337 30 0 chr5 40731207 40731308 -162354224 + MIR SINE MIR 37 140 -68 2124 38 0 30 chr5 40733300 40733567 -162351965 + AluY SINE Alu 49 307 -4 323 265 43 43 chr5 40733665 40733782 -162351750 + MIR3 SINE MIR 85 201 -7 243 103 0 0 chr5 40735746 40735791 -162349741 + (CA)n Simple_repeat Simple_repeat 1 84 0 243 103 0 0 chr5 40735791 40735830 -162349702 + (CA)n Simple_repeat Simple_repeat 1 39 0 1343 175 129 10 chr5 40736268 40736577 -162348955 + MER4A LTR ERV1 1 346 -318 624 173 251 62 chr5 40736602 40736633 -162348899 + MER4C LTR ERV1 159 183 -282 2416 75 0 0 chr5 40736633 40736925 -162348607 + AluSc SINE Alu 1 292 -17 624 173 251 62 chr5 40736925 40737136 -162348396 + MER4C LTR ERV1 183 447 -18 1339 179 146 94 chr5 40737157 40737356 -162348176 + MER4C-int LTR ERV1 1 188 -6410 243 0 0 0 chr5 40737356 40737383 -162348149 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1339 179 146 94 chr5 40737383 40737780 -162347752 + MER4C-int LTR ERV1 188 628 -5970 365 635 0 6 chr5 40737784 40737940 -162347592 + (TG)n Simple_repeat Simple_repeat 2 156 0 269 305 39 49 chr5 40738989 40739192 -162346340 + MER4C-int LTR ERV1 1235 1435 -5366 387 312 43 34 chr5 40740652 40740978 -162344554 + MER110-int LTR ERV1 2549 2634 -4167 2168 105 3 7 chr5 40741000 40741295 -162344237 - AluSg SINE Alu -16 294 1 295 363 40 27 chr5 40741466 40741942 -162343590 + MER110-int LTR ERV1 3160 3641 -3481 355 309 109 78 chr5 40741985 40742444 -162343088 + MER110-int LTR ERV1 3381 3853 -2948 2352 77 0 3 chr5 40742479 40742778 -162342754 + AluY SINE Alu 1 298 -13 367 294 47 47 chr5 40743349 40743519 -162342013 + MER110-int LTR ERV1 2137 2306 -2341 183 231 0 77 chr5 40743527 40743592 -162341940 + L2 LINE L2 2527 2586 -728 392 301 65 75 chr5 40743604 40744083 -162341449 + MER110-int LTR ERV1 2390 2863 -1784 1107 319 52 36 chr5 40744440 40745227 -162340305 + MER110-int LTR ERV1 5633 6432 -690 900 302 8 8 chr5 40745342 40745610 -162339922 - PABL_B-int LTR ERV1 -439 6683 6416 330 87 0 0 chr5 40745659 40745705 -162339827 + (TG)n Simple_repeat Simple_repeat 2 47 0 1791 170 0 0 chr5 40745706 40745988 -162339544 - AluJb SINE Alu -26 286 5 35 54 0 0 chr5 40745992 40746048 -162339484 + AT_rich Low_complexity Low_complexity 1 56 0 1687 152 42 18 chr5 40746094 40746377 -162339155 - AluSx SINE Alu -22 290 1 330 312 114 57 chr5 40746428 40746745 -162338787 - L1MEc LINE L1 -4630 1754 1420 233 224 9 75 chr5 40746753 40746860 -162338672 - L1MEc LINE L1 -5037 1526 1427 228 254 0 0 chr5 40746892 40746951 -162338581 + T-rich Low_complexity Low_complexity 1 59 0 2105 133 54 101 chr5 40747342 40748013 -162337519 + MER4E LTR ERV1 1 759 -7 1156 267 157 33 chr5 40748209 40748815 -162336717 - LTR50 LTR ERVL -111 684 4 2078 175 85 15 chr5 40748875 40749275 -162336257 - MSTA LTR MaLR 0 428 1 8145 198 34 9 chr5 40749275 40749361 -162336171 - MSTA-int LTR MaLR 0 1651 1569 5178 60 51 0 chr5 40749361 40749989 -162335543 - PABL_A LTR ERV1 0 660 1 8145 198 34 9 chr5 40749989 40751508 -162334024 - MSTA-int LTR MaLR -82 1569 5 1794 183 0 0 chr5 40751510 40751795 -162333737 - AluSx SINE Alu -23 289 5 1854 179 117 8 chr5 40751820 40752195 -162333337 - MSTA LTR MaLR -12 416 1 7021 228 68 43 chr5 40752195 40753807 -162331725 - MSTA-int LTR MaLR 0 1651 1 1972 179 79 55 chr5 40753807 40753848 -162331684 - MSTA LTR MaLR 0 428 389 2077 130 0 31 chr5 40753848 40754170 -162331362 + AluSx SINE Alu 1 312 0 1972 179 79 55 chr5 40754170 40754546 -162330986 - MSTA LTR MaLR -39 389 1 1695 157 118 21 chr5 40754998 40755336 -162330196 + THE1C LTR MaLR 1 371 -4 279 257 0 14 chr5 40755455 40755525 -162330007 + MLT1E1 LTR MaLR 5 73 -581 2694 102 42 49 chr5 40755525 40755956 -162329576 + MSTA LTR MaLR 1 428 0 631 164 109 0 chr5 40755956 40756084 -162329448 + MSTA-int LTR MaLR 1 142 -1509 1973 135 47 75 chr5 40756084 40756470 -162329062 + THE1C LTR MaLR 1 375 0 9511 158 37 7 chr5 40756471 40758004 -162327528 + THE1C-int LTR MaLR 2 1580 0 1595 154 63 83 chr5 40758004 40758389 -162327143 + THE1C LTR MaLR 1 390 -38 2128 127 3 13 chr5 40758389 40758704 -162326828 - AluSx SINE Alu 0 312 1 1595 154 63 83 chr5 40758704 40758743 -162326789 + THE1C LTR MaLR 390 428 0 7599 195 43 16 chr5 40758743 40760217 -162325315 + MSTA-int LTR MaLR 138 1651 0 2280 174 38 21 chr5 40760217 40760636 -162324896 + MSTA LTR MaLR 1 426 -2 1980 227 92 53 chr5 40760639 40761202 -162324330 + MLT1E1 LTR MaLR 70 654 0 472 333 104 4 chr5 40761372 40761603 -162323929 + L1MEd LINE L1 121 374 -6022 1181 187 57 66 chr5 40762147 40762479 -162323053 - L1MC4 LINE L1 -715 7327 6999 * 9302 168 15 21 chr5 40762468 40763120 -162322412 - L1PB1 LINE L1 0 6867 6212 2247 91 28 0 chr5 40763120 40763406 -162322126 + AluSc SINE Alu 1 294 -15 9302 168 15 21 chr5 40763406 40763449 -162322083 - L1PB1 LINE L1 -655 6212 6170 1966 135 3 0 chr5 40763449 40763781 -162321751 - AluSx SINE Alu 0 333 1 9302 168 15 21 chr5 40763781 40765954 -162319578 - L1PB1 LINE L1 -697 6170 4012 2054 101 102 46 chr5 40765956 40766370 -162319162 - LTR14B LTR ERVK 0 608 1 5774 175 66 2 chr5 40766374 40767671 -162317861 - L1PB1 LINE L1 -2848 4014 2634 2784 122 18 0 chr5 40767670 40768184 -162317348 + L1PBa LINE L1 997 1704 -5159 * 2256 106 0 16 chr5 40768769 40769081 -162316451 + AluSx SINE Alu 1 307 -5 209 253 76 38 chr5 40769209 40769288 -162316244 + L2 LINE L2 2412 2493 -821 2038 144 33 36 chr5 40772376 40772738 -162312794 + THE1C LTR MaLR 14 374 -1 792 258 89 59 chr5 40773058 40773652 -162311880 + L1MEd LINE L1 678 1289 -4916 319 302 39 0 chr5 40773896 40774025 -162311507 + LTR67 LTR ERVL 403 536 -21 519 280 7 7 chr5 40774120 40774263 -162311269 + L2 LINE L2 3171 3313 0 298 284 74 0 chr5 40774933 40775014 -162310518 + L2 LINE L2 3186 3272 0 664 188 62 45 chr5 40776697 40776824 -162308708 + L1MB4 LINE L1 6000 6132 -48 1812 140 0 58 chr5 40776824 40777132 -162308400 + AluSx SINE Alu 1 290 -22 664 188 62 45 chr5 40777132 40777180 -162308352 + L1MB4 LINE L1 6132 6178 -2 10280 32 0 1 chr5 40777195 40779121 -162306411 - L1PA3 LINE L1 -5 6150 4229 272 175 0 0 chr5 40779224 40779264 -162306268 - MER2 DNA MER2_type -305 40 1 811 270 104 50 chr5 40779276 40779306 -162306226 + MLT1J1 LTR MaLR 2 29 -417 2186 119 3 7 chr5 40779306 40779608 -162305924 - AluSq SINE Alu -12 301 1 811 270 104 50 chr5 40779608 40779999 -162305533 + MLT1J1 LTR MaLR 29 446 0 730 278 64 4 chr5 40781166 40781400 -162304132 - LTR16A LTR ERVL 0 450 203 263 224 17 0 chr5 40781436 40781494 -162304038 - LTR16A1 LTR ERVL -336 121 63 310 303 40 36 chr5 40783101 40783279 -162302253 + MIR SINE MIR 14 193 -63 749 276 33 16 chr5 40783803 40784046 -162301486 - MIR SINE MIR -8 254 8 2213 94 3 3 chr5 40784783 40785071 -162300461 - AluSx SINE Alu -18 294 7 1052 247 120 44 chr5 40789383 40789865 -162295667 - LTR33A LTR ERVL -4 519 1 389 256 111 26 chr5 40790545 40790662 -162294870 + L2 LINE L2 3187 3313 0 190 215 13 101 chr5 40790849 40790869 -162294663 + MER5A DNA MER1_type 1 13 -176 312 262 221 14 chr5 40790869 40791014 -162294518 - MER5B DNA MER1_type -3 175 1 1908 203 3 14 chr5 40791642 40791987 -162293545 + MER58B DNA MER1_type 1 341 0 667 282 73 54 chr5 40792160 40792638 -162292894 - LTR33 LTR ERVL -6 515 29 1203 173 106 4 chr5 40793090 40793327 -162292205 + MER2 DNA MER2_type 83 343 -2 6464 180 88 13 chr5 40796494 40797936 -162287596 - Looper DNA T2_type -1 1557 8 1042 122 13 0 chr5 40798008 40798164 -162287368 + L1MB3 LINE L1 6026 6183 0 228 279 90 57 chr5 40798518 40798640 -162286892 - L2 LINE L2 -21 3251 3167 526 340 46 17 chr5 40799024 40799262 -162286270 + MIR SINE MIR 12 256 -6 2228 158 48 5 chr5 40799775 40800149 -162285383 + MLT1B LTR MaLR 1 390 0 378 233 121 17 chr5 40800538 40800654 -162284878 + MIR SINE MIR 71 198 -64 234 0 0 0 chr5 40801831 40801857 -162283675 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr5 40801983 40802011 -162283521 + AT_rich Low_complexity Low_complexity 1 28 0 1476 263 11 3 chr5 40804524 40804893 -162280639 - LTR16A LTR ERVL -60 390 19 4285 271 64 34 chr5 40805346 40805722 -162279810 - HERV16 LTR ERVL -3507 1489 1126 867 222 88 5 chr5 40805722 40805916 -162279616 - MER58C DNA MER1_type -3 212 3 4285 271 64 34 chr5 40805916 40806954 -162278578 - HERV16 LTR ERVL -3870 1126 33 736 295 51 5 chr5 40806981 40807198 -162278334 - LTR16A LTR ERVL -18 432 206 1431 100 10 69 chr5 40807205 40807496 -162278036 - L1PA6 LINE L1 -2 6152 5879 24425 47 9 3 chr5 40808047 40811711 -162273821 + L1PA4 LINE L1 2279 5958 -197 7284 232 24 41 chr5 40811823 40812983 -162272549 + L1 LINE L1 2358 3468 -2678 1630 196 0 0 chr5 40812983 40813258 -162272274 + AluJb SINE Alu 1 275 -37 7284 232 24 41 chr5 40813258 40814157 -162271375 + L1 LINE L1 3468 4381 -1765 605 100 0 0 chr5 40814170 40814250 -162271282 + L1MA3 LINE L1 6222 6301 -4 2416 75 0 0 chr5 40814277 40814569 -162270963 + AluSc SINE Alu 1 292 -17 628 172 276 27 chr5 40814569 40814780 -162270752 + MER4C LTR ERV1 178 447 -18 1374 174 147 100 chr5 40814801 40815000 -162270532 + MER4C-int LTR ERV1 1 189 -6409 243 0 0 0 chr5 40815000 40815027 -162270505 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1374 174 147 100 chr5 40815027 40815429 -162270103 + MER4C-int LTR ERV1 189 636 -5962 268 23 0 47 chr5 40815429 40815472 -162270060 + (TG)n Simple_repeat Simple_repeat 2 42 0 1374 174 147 100 chr5 40815472 40815507 -162270025 + MER4C-int LTR ERV1 636 668 -5930 1594 110 12 41 chr5 40816560 40816806 -162268726 - MER1B DNA MER1_type 0 339 101 250 179 0 0 chr5 40816811 40816850 -162268682 - MER1B DNA MER1_type -298 39 1 24 0 0 0 chr5 40817762 40817786 -162267746 + AT_rich Low_complexity Low_complexity 1 24 0 422 274 40 8 chr5 40818601 40818725 -162266807 + MIR SINE MIR 62 189 -73 183 293 0 0 chr5 40819210 40819251 -162266281 + L2 LINE L2 3224 3264 -8 861 178 0 0 chr5 40819619 40819748 -162265784 + FLAM_A SINE Alu 2 130 -3 341 303 58 110 chr5 40820465 40820947 -162264585 + L2 LINE L2 2856 3312 -1 412 246 53 0 chr5 40823165 40823279 -162262253 + MER103 DNA DNA 44 163 -3 323 275 92 0 chr5 40823464 40823573 -162261959 + MIR3 SINE MIR 59 177 -31 694 268 33 24 chr5 40826102 40826315 -162259217 - MIR SINE MIR -41 221 7 189 0 0 0 chr5 40827401 40827422 -162258110 + (A)n Simple_repeat Simple_repeat 1 21 0 225 247 14 27 chr5 40828225 40828298 -162257234 + MER5A DNA MER1_type 44 115 -74 192 333 0 0 chr5 40828282 40828333 -162257199 - MER5B DNA MER1_type -127 51 1 * 225 0 0 0 chr5 40829049 40829074 -162256458 + (TG)n Simple_repeat Simple_repeat 1 25 0 192 40 0 0 chr5 40829661 40829686 -162255846 + (A)n Simple_repeat Simple_repeat 1 25 0 296 265 10 20 chr5 40830054 40830152 -162255380 + L1MC4a LINE L1 6431 6527 -1281 882 228 63 14 chr5 40830157 40830442 -162255090 - L1MC4 LINE L1 -828 7214 6916 240 255 0 0 chr5 40830529 40830580 -162254952 + L1MD3 LINE L1 7715 7765 -230 303 130 0 0 chr5 40830583 40830637 -162254895 + (TG)n Simple_repeat Simple_repeat 2 55 0 388 241 104 59 chr5 40830657 40830927 -162254605 + L1MC4 LINE L1 7701 7982 -60 2221 134 0 0 chr5 40831987 40832294 -162253238 + AluSp SINE Alu 1 307 -6 231 301 107 10 chr5 40833621 40833724 -162251808 - L2 LINE L2 0 3313 3201 261 0 0 0 chr5 40833764 40833793 -162251739 + (TG)n Simple_repeat Simple_repeat 1 29 0 259 266 75 43 chr5 40835468 40835562 -162249970 - MIR SINE MIR -116 146 50 308 264 322 17 chr5 40836430 40836604 -162248928 + MIR SINE MIR 20 246 -16 186 189 27 0 chr5 40838997 40839034 -162246498 + MIR SINE MIR 108 145 -63 2613 125 10 10 chr5 40839411 40839812 -162245720 + MSTA LTR MaLR 1 401 -27 1598 191 33 4 chr5 40839846 40839997 -162245535 - AluJb SINE Alu -27 285 121 180 0 0 0 chr5 40839997 40840017 -162245515 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 1598 191 33 4 chr5 40840017 40840138 -162245394 - AluJb SINE Alu -191 121 5 304 77 0 0 chr5 40840143 40840182 -162245350 + MSTA LTR MaLR 390 428 0 304 325 43 0 chr5 40840586 40840749 -162244783 + MER102b DNA MER1_type 164 333 -8 2508 57 0 0 chr5 40840939 40841240 -162244292 - AluY SINE Alu -6 305 5 1266 91 0 0 chr5 40842319 40842484 -162243048 + AluY SINE Alu 144 308 -3 260 314 33 39 chr5 40843135 40843288 -162242244 + LTR16C LTR ERVL 340 491 0 7155 48 17 43 chr5 40843367 40844456 -162241076 - L1PA7 LINE L1 -1 6153 5066 2839 86 0 20 chr5 40844769 40844900 -162240632 - L1PA7 LINE L1 -1309 4837 4705 2545 69 3 0 chr5 40844900 40845203 -162240329 - AluY SINE Alu -7 304 1 2839 86 0 20 chr5 40845203 40845477 -162240055 - L1PA7 LINE L1 -1441 4705 4440 * 6978 92 4 14 chr5 40845476 40846458 -162239074 + L1P LINE L1 1730 2701 -3445 233 143 0 107 chr5 40846648 40846732 -162238800 - Alu SINE Alu -24 277 203 5253 96 52 4 chr5 40846842 40847668 -162237864 + L1PBa LINE L1 1767 2632 -4231 430 219 6 94 chr5 40847665 40847825 -162237707 - L1MC4 LINE L1 -1026 7016 6871 * 1025 225 132 65 chr5 40847815 40848094 -162237438 - L1MC4a LINE L1 -1158 6650 6391 1206 222 11 0 chr5 40848094 40848360 -162237172 + L1MB3 LINE L1 5915 6183 0 1025 225 132 65 chr5 40848360 40848421 -162237111 - L1MC4a LINE L1 -1417 6391 6336 492 59 35 0 chr5 40848421 40848506 -162237026 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 1025 225 132 65 chr5 40848506 40848671 -162236861 - L1MC4a LINE L1 -1472 6336 6110 508 171 36 0 chr5 40848677 40848788 -162236744 - L1MC4a LINE L1 -1739 6069 5955 1884 222 44 44 chr5 40848844 40849384 -162236148 - L1MC4a LINE L1 -1965 5843 5304 183 129 0 0 chr5 40849706 40849737 -162235795 + (CAGAA)n Simple_repeat Simple_repeat 4 34 0 2011 43 0 0 chr5 40849792 40850026 -162235506 - L1PA5 LINE L1 -13 6141 5908 2507 159 28 30 chr5 40850815 40851288 -162234244 + MER70A LTR ERVL 1 472 0 2972 187 48 5 chr5 40851288 40852361 -162233171 + MER70A-int LTR ERVL 1 1191 -3832 2072 174 38 33 chr5 40852382 40852801 -162232731 + MER70A-int LTR ERVL 2387 2807 -2216 * 5551 164 32 39 chr5 40852790 40853522 -162232010 + MER70A-int LTR ERVL 2947 3683 -1340 1985 174 88 8 chr5 40853522 40853918 -162231614 + MSTA LTR MaLR 1 428 0 5551 164 32 39 chr5 40853918 40854120 -162231412 + MER70A-int LTR ERVL 3683 3885 -1138 2298 119 3 0 chr5 40854120 40854431 -162231101 - AluSx SINE Alu 0 312 1 5551 164 32 39 chr5 40854431 40854884 -162230648 + MER70A-int LTR ERVL 3885 4340 -683 1099 44 0 0 chr5 40854884 40855020 -162230512 - L1PA4 LINE L1 0 6155 6020 5551 164 32 39 chr5 40855020 40855488 -162230044 + MER70A-int LTR ERVL 4340 4882 -141 2179 184 29 15 chr5 40855488 40855900 -162229632 + MER70A LTR ERVL 55 472 0 2184 92 3 38 chr5 40856343 40856659 -162228873 + AluSp SINE Alu 3 307 -6 185 253 76 38 chr5 40857074 40857153 -162228379 + L2 LINE L2 2412 2493 -821 337 294 28 9 chr5 40859237 40859346 -162226186 - L2 LINE L2 -5 3308 3198 645 168 80 0 chr5 40859401 40859526 -162226006 + FLAM_A SINE Alu 5 139 -3 7078 200 93 4 chr5 40862576 40864455 -162221077 + L1MA3 LINE L1 14 2402 -5163 14802 163 33 15 chr5 40864456 40867624 -162217908 + L1MA3 LINE L1 3199 6463 -1261 2008 76 43 29 chr5 40867624 40867901 -162217631 + AluSq SINE Alu 31 311 -2 14802 163 33 15 chr5 40867901 40869079 -162216453 + L1MA3 LINE L1 6463 7618 -106 685 96 19 10 chr5 40869180 40869284 -162216248 + MER4A LTR ERV1 3 107 -557 * 1955 152 53 35 chr5 40869277 40869651 -162215881 + MER4A LTR ERV1 284 664 0 238 325 26 0 chr5 40870557 40870671 -162214861 + MER5B DNA MER1_type 6 122 -56 481 277 32 26 chr5 40870903 40871058 -162214474 - MER96 DNA MER1_type? 0 175 20 301 101 7 94 chr5 40872318 40872456 -162213076 + (TTTTTA)n Simple_repeat Simple_repeat 4 129 0 2314 85 7 0 chr5 40872852 40873146 -162212386 + AluSq SINE Alu 1 296 -17 390 74 0 0 chr5 40873984 40874038 -162211494 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 503 186 12 0 chr5 40874391 40874477 -162211055 - FRAM SINE Alu -17 159 73 300 246 34 51 chr5 40874592 40874710 -162210822 - HAL1 LINE L1 0 2507 2392 924 214 52 108 chr5 40874719 40875126 -162210406 + LTR52 LTR ERVL 1 384 -37 1399 238 50 1 chr5 40875146 40875537 -162209995 + HERVL74 LTR ERVL 1675 2078 -1478 1197 208 0 15 chr5 40875644 40875909 -162209623 + HERVL74 LTR ERVL 2249 2509 -1047 2205 184 40 38 chr5 40875909 40876221 -162209311 - MLT1D LTR MaLR 0 505 190 1691 76 31 5 chr5 40876221 40876445 -162209087 + MER30 DNA MER1_type 1 230 0 2205 184 40 38 chr5 40876445 40876636 -162208896 - MLT1D LTR MaLR -315 190 1 948 209 32 124 chr5 40876683 40877085 -162208447 - MLT1D-int LTR MaLR -44 1327 963 226 217 72 14 chr5 40877239 40877308 -162208224 - MLT1D-int LTR MaLR -486 885 813 842 133 0 0 chr5 40877315 40877435 -162208097 + AluSp/q SINE Alu 175 294 -19 2176 115 6 13 chr5 40877510 40877823 -162207709 - AluSx SINE Alu -1 311 1 238 88 0 0 chr5 40878294 40878328 -162207204 - Alu SINE Alu -267 34 1 281 306 0 0 chr5 40878328 40878413 -162207119 - MLT1D-int LTR MaLR -621 750 666 2601 186 22 7 chr5 40878413 40878876 -162206656 + MER70A LTR ERVL 1 470 -2 494 174 24 169 chr5 40878942 40879149 -162206383 - MLT1D-int LTR MaLR -711 660 484 512 261 18 58 chr5 40879151 40879377 -162206155 - MLT1D-int LTR MaLR -1089 282 66 189 0 0 0 chr5 40879809 40879830 -162205702 + (TC)n Simple_repeat Simple_repeat 2 22 0 1820 173 3 17 chr5 40879830 40880131 -162205401 - AluJb SINE Alu -15 297 1 1595 170 58 0 chr5 40880344 40880673 -162204859 + L1MB4 LINE L1 5663 6010 -173 3458 100 6 4 chr5 40880673 40881172 -162204360 + LTR3b LTR ERVK 1 500 0 429 210 134 105 chr5 40881406 40881644 -162203888 + HERVK3 LTR ERVK 28 272 -6971 183 80 0 0 chr5 40881646 40881671 -162203861 + (T)n Simple_repeat Simple_repeat 1 25 0 434 267 0 0 chr5 40881708 40881809 -162203723 + HERVK3 LTR ERVK 580 680 -6563 * 532 198 95 8 chr5 40881794 40881920 -162203612 + HERVK3 LTR ERVK 1317 1453 -5790 2324 160 1 35 chr5 40881927 40882458 -162203074 + HERVK14 LTR ERVK 5141 5572 -373 443 100 0 14 chr5 40882470 40882540 -162202992 + HERVK14 LTR ERVK 5816 5884 -61 3346 86 31 4 chr5 40882554 40883041 -162202491 + LTR3b LTR ERVK 1 500 0 653 169 64 47 chr5 40883041 40883164 -162202368 + L1MB4 LINE L1 6004 6132 -48 1867 133 0 58 chr5 40883164 40883472 -162202060 + AluSx SINE Alu 1 290 -22 653 169 64 47 chr5 40883472 40883520 -162202012 + L1MB4 LINE L1 6132 6178 -2 198 0 0 0 chr5 40883529 40883551 -162201981 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7621 23 0 0 chr5 40883551 40885014 -162200518 - L1PA3 LINE L1 -18 6137 4676 2265 115 0 3 chr5 40885051 40885347 -162200185 + AluSx SINE Alu 1 295 -17 1779 168 4 0 chr5 40885945 40886225 -162199307 - AluJb SINE Alu -27 285 5 237 333 44 54 chr5 40887959 40888163 -162197369 + MIR3 SINE MIR 5 206 -2 524 15 15 0 chr5 40890107 40890172 -162195360 + (GA)n Simple_repeat Simple_repeat 1 66 0 2265 108 0 3 chr5 40890315 40890612 -162194920 - AluSx SINE Alu -16 296 1 194 256 73 0 chr5 40890655 40890737 -162194795 - L2 LINE L2 -130 3183 3096 315 223 79 116 chr5 40890832 40890914 -162194618 + L1MC5 LINE L1 7633 7717 -244 1758 167 7 0 chr5 40890914 40891190 -162194342 + AluSg SINE Alu 1 278 -32 806 70 0 9 chr5 40891193 40891308 -162194224 + (GGAA)n Simple_repeat Simple_repeat 3 116 0 315 223 79 116 chr5 40891308 40891513 -162194019 + L1MC5 LINE L1 7719 7913 -48 287 302 65 51 chr5 40891532 40891886 -162193646 - L1M4 LINE L1 -3603 2543 2185 409 214 11 0 chr5 40892004 40892093 -162193439 + MER70A LTR ERVL 380 469 -3 2248 107 0 16 chr5 40892824 40893134 -162192398 + AluSx SINE Alu 1 305 -7 183 269 30 45 chr5 40893273 40893340 -162192192 + L2 LINE L2 2428 2493 -821 186 195 0 73 chr5 40894608 40894649 -162190883 - L2 LINE L2 -96 3217 3180 303 273 38 30 chr5 40894660 40894792 -162190740 - L1MC4 LINE L1 -1272 6770 6638 * 2595 145 40 17 chr5 40894783 40895429 -162190103 - L1P4 LINE L1 -432 5734 5083 1283 268 67 28 chr5 40895452 40896175 -162189357 - L1PA12 LINE L1 -4708 2866 2179 10595 208 25 46 chr5 40896477 40897707 -162187825 - L1P4 LINE L1 -584 6285 5030 2091 79 72 0 chr5 40897707 40897986 -162187546 - AluSq SINE Alu -14 299 1 10595 208 25 46 chr5 40897986 40898012 -162187520 - L1P4 LINE L1 -1839 5030 5005 538 122 0 11 chr5 40898012 40898102 -162187430 - L1MA1 LINE L1 0 6302 6214 10595 208 25 46 chr5 40898102 40899009 -162186523 - L1P4 LINE L1 -1864 5005 4080 1655 196 0 0 chr5 40899009 40899284 -162186248 - AluJb SINE Alu -37 275 1 10595 208 25 46 chr5 40899284 40900813 -162184719 - L1P4 LINE L1 -2789 4080 2684 596 215 170 45 chr5 40900815 40901062 -162184470 - MER52A LTR ERV1 -1477 278 1 1078 268 52 63 chr5 40901062 40901661 -162183871 - L1PBb LINE L1 -4772 1431 759 1460 233 103 53 chr5 40902082 40903786 -162181746 - L1ME LINE L1 -396 5766 3965 381 188 0 0 chr5 40903860 40903945 -162181587 + (CA)n Simple_repeat Simple_repeat 2 86 0 2003 281 118 39 chr5 40904036 40905111 -162180421 + L1M3c LINE L1 219 1378 -4763 13322 148 20 30 chr5 40905118 40908346 -162177186 + L1P4 LINE L1 1011 4220 -3364 2680 121 15 6 chr5 40908330 40909021 -162176511 + L1P4 LINE L1 6416 7110 -489 * 409 259 159 7 chr5 40909502 40909742 -162175790 - L2 LINE L2 0 3313 2979 224 273 33 98 chr5 40909760 40909943 -162175589 - MIR SINE MIR -19 243 73 426 244 65 107 chr5 40909956 40910407 -162175125 - L1 LINE L1 -1870 4276 3840 1908 145 3 3 chr5 40910434 40910741 -162174791 + AluSx SINE Alu 1 307 0 359 342 8 0 chr5 40910751 40910868 -162174664 - L1ME3A LINE L1 -14 6156 6039 357 330 47 14 chr5 40910998 40911210 -162174322 - L1MEc LINE L1 -4240 2156 1938 949 232 91 117 chr5 40911245 40911939 -162173593 - L1ME3A LINE L1 -1 6169 5494 1179 113 20 10 chr5 40911940 40912142 -162173390 + LTR56 LTR ERV1 1 204 -241 1231 189 104 76 chr5 40912142 40912608 -162172924 - MER66A LTR ERV1 0 478 97 958 197 17 21 chr5 40912677 40912936 -162172596 + LTR56 LTR ERV1 201 432 -5 21 0 0 0 chr5 40912937 40912958 -162172574 + AT_rich Low_complexity Low_complexity 1 21 0 1784 168 17 13 chr5 40913023 40913321 -162172211 + AluJo SINE Alu 6 304 -8 241 268 41 0 chr5 40913354 40913451 -162172081 - L1ME3A LINE L1 -998 5361 5261 382 269 35 14 chr5 40913458 40913603 -162171929 - MLT1J2 LTR MaLR -298 152 5 2139 154 77 15 chr5 40913822 40913999 -162171533 + MSTA LTR MaLR 1 166 -262 2841 126 0 87 chr5 40913999 40914561 -162170971 - MER75 DNA T2_type -1 513 1 2139 154 77 15 chr5 40914561 40914786 -162170746 + MSTA LTR MaLR 166 428 0 455 290 62 0 chr5 40914904 40915049 -162170483 + LTR50 LTR ERVL 476 629 -166 2116 113 10 0 chr5 40917511 40917804 -162167728 + AluSq SINE Alu 1 296 -17 1712 165 3 21 chr5 40918001 40918292 -162167240 - AluJo SINE Alu -26 286 1 4703 174 93 30 chr5 40918293 40920376 -162165156 - L1MC2 LINE L1 -16 7123 4923 332 237 0 59 chr5 40920452 40920587 -162164945 - L1MC2 LINE L1 -2887 4054 3928 22 0 0 0 chr5 40920621 40920643 -162164889 + AT_rich Low_complexity Low_complexity 1 22 0 309 98 98 0 chr5 40920644 40920705 -162164827 - L1MA6 LINE L1 -5 6295 6229 24 32 0 0 chr5 40921647 40921678 -162163854 + AT_rich Low_complexity Low_complexity 1 31 0 239 254 17 164 chr5 40924532 40924709 -162160823 - MIR SINE MIR -40 222 72 41 0 0 0 chr5 40924979 40925020 -162160512 + AT_rich Low_complexity Low_complexity 1 41 0 338 230 79 40 chr5 40925046 40925172 -162160360 + MER94 DNA DNA 1 131 -3 560 216 9 9 chr5 40926829 40926940 -162158592 + MIR SINE MIR 5 115 -147 182 194 0 0 chr5 40926988 40927019 -162158513 + MIR SINE MIR 203 233 -29 601 76 93 8 chr5 40927983 40928101 -162157431 - MER3 DNA MER1_type 0 2596 2469 348 200 31 0 chr5 40928096 40928161 -162157371 - MER3 DNA MER1_type -103 106 40 * 381 367 120 8 chr5 40928575 40928818 -162156714 + L2 LINE L2 2511 2725 -547 1995 128 54 7 chr5 40928818 40929116 -162156416 - AluSx SINE Alu 0 312 1 381 367 120 8 chr5 40929116 40929350 -162156182 + L2 LINE L2 2725 3042 -230 2389 252 34 27 chr5 40929494 40930249 -162155283 - L1MC2 LINE L1 -4887 1536 806 244 321 99 23 chr5 40930379 40930510 -162155022 + L2 LINE L2 3171 3311 -2 705 306 130 9 chr5 40931453 40931776 -162153756 - L3 LINE CR1 -15 1562 1201 249 233 50 0 chr5 40931983 40932043 -162153489 - L2 LINE L2 0 3313 3251 382 331 156 29 chr5 40932445 40932907 -162152625 - L3 LINE CR1 -22 1555 977 368 326 174 6 chr5 40934090 40934268 -162151264 - MIR SINE MIR -7 255 48 194 204 0 19 chr5 40934339 40934393 -162151139 + GA-rich Low_complexity Low_complexity 2 54 0 1939 176 85 22 chr5 40935348 40935809 -162149723 + LTR2B LTR ERV1 1 490 0 21 57 0 0 chr5 40936511 40936546 -162148986 + AT_rich Low_complexity Low_complexity 1 35 0 387 252 26 35 chr5 40937922 40938037 -162147495 + L1MD2 LINE L1 5992 6105 -254 180 0 0 0 chr5 40938037 40938057 -162147475 + (CA)n Simple_repeat Simple_repeat 2 21 0 397 226 208 13 chr5 40938068 40938227 -162147305 + L1MD3 LINE L1 7787 7976 -19 2293 100 3 0 chr5 40938994 40939295 -162146237 - AluSg SINE Alu -8 302 1 1564 160 0 22 chr5 40939563 40939831 -162145701 + AluJb SINE Alu 47 308 -4 2895 201 96 14 chr5 40940279 40940970 -162144562 + L1MC4 LINE L1 7250 8006 -36 1800 90 9 128 chr5 40940970 40941313 -162144219 - AluSq SINE Alu 0 303 2 2895 201 96 14 chr5 40941313 40941354 -162144178 + L1MC4 LINE L1 8006 8042 0 2548 258 136 12 chr5 40941398 40942319 -162143213 + L2 LINE L2 612 1646 -1668 662 72 72 0 chr5 40942322 40942507 -162143025 - AluSc SINE Alu 0 359 166 9666 128 26 26 chr5 40942607 40943175 -162142357 - L1M1 LINE L1 -4872 2693 2126 1719 148 17 24 chr5 40943175 40943466 -162142066 - AluJb SINE Alu -23 289 1 9666 128 26 26 chr5 40943466 40944487 -162141045 - L1M1 LINE L1 -5439 2126 1105 750 130 35 0 chr5 40944485 40944600 -162140932 - L1M1 LINE L1 -7431 134 16 * 185 351 54 60 chr5 40945888 40946056 -162139476 + L2 LINE L2 2856 3022 -250 240 35 0 0 chr5 40946952 40946981 -162138551 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 934 152 0 0 chr5 40946998 40947136 -162138396 - AluJb SINE Alu -171 141 4 41 72 0 0 chr5 40948146 40948229 -162137303 + AT_rich Low_complexity Low_complexity 1 83 0 257 159 0 0 chr5 40948464 40948508 -162137024 - MIR SINE MIR -148 114 71 36 70 0 0 chr5 40948872 40948943 -162136589 + AT_rich Low_complexity Low_complexity 1 71 0 1748 148 86 12 chr5 40949899 40950223 -162135309 - MER7A DNA MER2_type 0 346 1 21 36 0 0 chr5 40950488 40950516 -162135016 + AT_rich Low_complexity Low_complexity 1 28 0 372 229 118 49 chr5 40950641 40950785 -162134747 - L2 LINE L2 -1 3312 3159 * 1193 253 164 35 chr5 40950765 40951307 -162134225 - L2 LINE L2 -992 2322 1711 2193 47 8 0 chr5 40951346 40951599 -162133933 + AluSc SINE Alu 1 255 -54 901 40 0 0 chr5 40951600 40951701 -162133831 + AluSc SINE Alu 155 255 -54 1095 84 14 0 chr5 40951702 40951920 -162133612 + AluSc SINE Alu 155 374 0 214 258 172 25 chr5 40951992 40952155 -162133377 - L2 LINE L2 -1805 1509 1323 9037 98 26 14 chr5 40952275 40953292 -162132240 + L1M1 LINE L1 2133 3176 -4389 3454 31 2 2 chr5 40953292 40953711 -162131821 + L1PA4 LINE L1 5734 6152 -3 9037 98 26 14 chr5 40953711 40954168 -162131364 + L1M1 LINE L1 3176 3626 -3939 2538 164 10 4 chr5 40954154 40954636 -162130896 + L1M1 LINE L1 4709 5193 -2372 * 29060 49 9 1 chr5 40954737 40959240 -162126292 + L1PA5 LINE L1 1619 6152 -2 21 57 0 0 chr5 40959809 40959844 -162125688 + AT_rich Low_complexity Low_complexity 1 35 0 2517 57 0 3 chr5 40959937 40960237 -162125295 + AluY SINE Alu 1 299 -12 199 311 48 29 chr5 40962746 40962849 -162122683 + L2 LINE L2 2652 2756 -558 307 279 12 47 chr5 40965596 40965682 -162119850 + MIR SINE MIR 41 123 -85 315 288 0 0 chr5 40966570 40966650 -162118882 + L1M1 LINE L1 5488 5567 -1998 34 24 0 0 chr5 40967035 40967076 -162118456 + AT_rich Low_complexity Low_complexity 1 41 0 306 221 13 13 chr5 40967877 40967954 -162117578 + L1ME4a LINE L1 5964 6040 -81 1471 266 177 19 chr5 40968079 40968987 -162116545 + L2 LINE L2 2258 3307 -6 180 296 37 37 chr5 40969250 40969331 -162116201 - MIR3 SINE MIR -24 184 104 963 252 27 0 chr5 40969417 40969639 -162115893 - MIR SINE MIR -2 260 33 406 274 122 10 chr5 40970082 40970279 -162115253 + L1ME LINE L1 5533 5751 -370 525 286 92 0 chr5 40971246 40971442 -162114090 - MER20 DNA MER1_type -4 215 2 284 266 117 0 chr5 40971570 40971664 -162113868 + MIR SINE MIR 47 151 -111 288 272 65 0 chr5 40973327 40973419 -162112113 + MIR SINE MIR 116 213 -49 685 264 64 24 chr5 40973613 40973863 -162111669 + MIR SINE MIR 3 262 0 2304 110 0 0 chr5 40974048 40974348 -162111184 - AluSq SINE Alu -13 300 1 290 221 35 70 chr5 40974827 40974913 -162110619 + L2 LINE L2 3190 3272 0 224 345 136 22 chr5 40975468 40975593 -162109939 - L2 LINE L2 -811 2503 2394 2050 121 10 7 chr5 40975593 40975899 -162109633 + AluSg SINE Alu 1 307 -3 224 345 136 22 chr5 40975899 40976222 -162109310 - L2 LINE L2 -920 2394 2004 350 276 238 9 chr5 40978203 40978413 -162107119 + MIR SINE MIR 5 262 0 954 207 80 4 chr5 40978449 40978700 -162106832 + L1MA9 LINE L1 6005 6274 -38 404 276 49 0 chr5 40979265 40979388 -162106144 - MIR SINE MIR -112 150 22 2392 78 31 65 chr5 40980379 40980765 -162104767 + THE1C LTR MaLR 1 373 -2 1140 247 149 18 chr5 40980829 40981448 -162104084 - L2 LINE L2 0 3313 2630 225 268 14 42 chr5 40981702 40981773 -162103759 - L2 LINE L2 -20 3252 3184 475 322 106 49 chr5 40982249 40982513 -162103019 - L2 LINE L2 0 3272 2994 283 331 73 68 chr5 40982914 40983162 -162102370 - L2 LINE L2 -2 3270 3022 505 296 65 15 chr5 40983298 40983497 -162102035 + MIR SINE MIR 28 236 -26 932 272 42 0 chr5 40983657 40983940 -162101592 - LTR16C LTR ERVL -6 485 191 256 283 0 0 chr5 40984317 40984377 -162101155 + L2 LINE L2 2992 3051 -262 260 207 52 0 chr5 40984419 40984477 -162101055 + L2 LINE L2 3249 3309 -4 342 232 72 0 chr5 40984708 40984777 -162100755 - MIR SINE MIR -169 93 20 383 210 180 10 chr5 40986210 40986310 -162099222 + L2 LINE L2 3197 3313 0 546 201 158 22 chr5 40986382 40986566 -162098966 - MER112 DNA MER1_type -18 242 34 199 319 124 44 chr5 40986605 40986718 -162098814 + MER5A DNA MER1_type 57 178 -11 644 253 103 15 chr5 40987974 40988179 -162097353 - MIR SINE MIR -26 236 16 593 104 31 0 chr5 40988289 40988385 -162097147 - U6 snRNA snRNA -7 100 2 209 171 0 0 chr5 40988385 40988420 -162097112 + (CCAA)n Simple_repeat Simple_repeat 3 37 0 231 228 18 18 chr5 40988590 40988647 -162096885 + L2 LINE L2 2508 2564 -750 1689 143 24 44 chr5 40988665 40988958 -162096574 + AluJo SINE Alu 1 287 -25 1598 261 37 29 chr5 40988976 40989564 -162095968 + L2 LINE L2 2639 3310 -3 285 29 0 0 chr5 40990258 40990292 -162095240 + (TA)n Simple_repeat Simple_repeat 2 35 0 2282 100 3 3 chr5 40993581 40993881 -162091651 - AluSp SINE Alu -13 300 1 533 261 121 10 chr5 40993893 40994100 -162091432 + MLT1J LTR MaLR 205 434 -77 585 222 167 0 chr5 40994217 40994379 -162091153 + L2 LINE L2 3125 3313 0 586 307 50 29 chr5 40994722 40994963 -162090569 + MIR SINE MIR 14 259 -3 718 246 62 11 chr5 40995047 40995307 -162090225 - L1MCc LINE L1 -6120 303 31 234 91 0 0 chr5 40996117 40996150 -162089382 + (CAT)n Simple_repeat Simple_repeat 2 34 0 265 242 0 45 chr5 40996346 40996412 -162089120 + MLT1E2 LTR MaLR 1 63 -563 525 44 0 0 chr5 40996519 40996587 -162088945 + (CA)n Simple_repeat Simple_repeat 1 68 0 519 105 19 57 chr5 40996600 40996705 -162088827 + L1MA9 LINE L1 6176 6276 -36 1186 243 39 41 chr5 40996718 40996829 -162088703 + MLT1E2 LTR MaLR 290 400 -226 1551 185 3 25 chr5 40996829 40997115 -162088417 + AluJo SINE Alu 1 280 -32 1186 243 39 41 chr5 40997115 40997341 -162088191 + MLT1E2 LTR MaLR 400 626 0 247 242 11 11 chr5 40997639 40997730 -162087802 - L1ME LINE L1 -265 5856 5766 729 140 9 0 chr5 40997981 40998095 -162087437 + AluJb SINE Alu 1 115 -197 539 302 44 28 chr5 40998314 40998562 -162086970 - L2 LINE L2 -1 3312 3061 2158 122 0 3 chr5 40998797 40999100 -162086432 - AluSq SINE Alu -6 307 6 2509 68 0 3 chr5 41000481 41000792 -162084740 + AluY SINE Alu 1 310 -1 22 0 0 0 chr5 41001012 41001034 -162084498 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr5 41001170 41001198 -162084334 + AT_rich Low_complexity Low_complexity 1 28 0 197 214 48 71 chr5 41002525 41002609 -162082923 + L2 LINE L2 2257 2338 -976 329 312 33 107 chr5 41002613 41002950 -162082582 + L2 LINE L2 1164 1475 -1839 7691 168 122 23 chr5 41003005 41004602 -162080930 - MER52A LTR ERV1 0 1755 1 1108 223 54 26 chr5 41004791 41005177 -162080355 - L1ME3 LINE L1 -1 6161 5765 484 300 111 62 chr5 41005294 41005761 -162079771 + L2 LINE L2 1938 2427 -887 393 282 0 0 chr5 41007424 41007527 -162078005 - MER94 DNA DNA -31 103 1 206 335 144 46 chr5 41007854 41008048 -162077484 + L2 LINE L2 2702 2914 -400 642 227 77 31 chr5 41008132 41008326 -162077206 - MIR SINE MIR 0 262 60 782 185 40 0 chr5 41008341 41008492 -162077040 - MER58B DNA MER1_type 0 341 185 314 286 68 61 chr5 41008558 41008684 -162076848 + L2 LINE L2 2916 3045 -227 2391 131 98 14 chr5 41008684 41009113 -162076419 - MLT1C LTR MaLR -2 465 1 314 286 68 61 chr5 41009113 41009133 -162076399 + L2 LINE L2 3045 3063 -209 210 71 0 0 chr5 41009160 41009188 -162076344 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 25 83 0 0 chr5 41009380 41009440 -162076092 + AT_rich Low_complexity Low_complexity 1 60 0 3460 90 108 12 chr5 41009967 41010655 -162074877 - L1MA3 LINE L1 -111 6194 5400 583 161 124 0 chr5 41010656 41010793 -162074739 + L1 LINE L1 4315 4468 -1678 7400 166 28 12 chr5 41010806 41012357 -162073175 - L1MA3 LINE L1 -768 5378 3803 20270 76 7 0 chr5 41012459 41015274 -162070258 - L1P LINE L1 -3302 2844 11 572 239 208 23 chr5 41015614 41016090 -162069442 - L1MC5 LINE L1 -66 7895 7332 826 199 70 11 chr5 41016099 41016285 -162069247 + MER20 DNA MER1_type 6 202 -17 2231 96 13 7 chr5 41018119 41018421 -162067111 + AluSg SINE Alu 1 304 -6 377 271 85 25 chr5 41018756 41018874 -162066658 + L2 LINE L2 3188 3312 -1 405 196 116 87 chr5 41019123 41019296 -162066236 - MLT1F LTR MaLR -364 178 1 1077 191 17 9 chr5 41019417 41019648 -162065884 + MLT1F1 LTR MaLR 333 565 -2 270 254 141 7 chr5 41020145 41020287 -162065245 - L2 LINE L2 -2 3311 3151 329 242 84 11 chr5 41021122 41021217 -162064315 - L2 LINE L2 -423 2891 2790 358 196 43 33 chr5 41021220 41021312 -162064220 + MER81 DNA DNA 1 93 -21 5187 66 0 0 chr5 41022106 41022756 -162062776 + L1PA6 LINE L1 5494 6143 -11 22 35 0 0 chr5 41022756 41022785 -162062747 + AT_rich Low_complexity Low_complexity 1 29 0 253 322 178 41 chr5 41022866 41023260 -162062272 - L2 LINE L2 -723 2591 2144 5754 127 41 13 chr5 41025133 41026350 -162059182 + L1MA4A LINE L1 5045 6290 -13 394 291 252 4 chr5 41026540 41026774 -162058758 + L1MC4a LINE L1 5667 5958 -1850 1017 278 108 10 chr5 41027633 41028039 -162057493 + MLT1J2 LTR MaLR 5 450 0 282 301 118 33 chr5 41028199 41028352 -162057180 + MIR SINE MIR 53 218 -44 497 325 52 5 chr5 41029070 41029264 -162056268 + MIR SINE MIR 20 222 -40 574 240 56 15 chr5 41029844 41030040 -162055492 + L1MC5 LINE L1 7724 7927 -34 22 56 0 0 chr5 41030343 41030379 -162055153 + AT_rich Low_complexity Low_complexity 1 36 0 1618 229 66 92 chr5 41031420 41032563 -162052969 - L1ME3A LINE L1 -5 6165 5050 1146 147 5 5 chr5 41034321 41034505 -162051027 + MER2 DNA MER2_type 7 190 -155 737 262 94 12 chr5 41034604 41034848 -162050684 - MLT1J2 LTR MaLR -132 318 55 2284 89 7 0 chr5 41034964 41035255 -162050277 + AluSq SINE Alu 1 293 -20 1606 228 102 54 chr5 41036133 41036650 -162048882 - MLT1F LTR MaLR 0 542 1 251 200 200 0 chr5 41037791 41037861 -162047671 + MER103 DNA DNA 12 95 -71 1411 109 5 5 chr5 41037877 41038078 -162047454 - AluSx SINE Alu -17 295 95 1607 87 0 0 chr5 41038078 41038286 -162047246 + MER11B LTR ERVK 6 213 -1023 835 87 0 0 chr5 41038312 41038416 -162047116 - AluSx SINE Alu -208 104 1 308 302 176 11 chr5 41038725 41038907 -162046625 + L2 LINE L2 2534 2745 -569 305 262 233 0 chr5 41039252 41039355 -162046177 + L2 LINE L2 3182 3308 -5 207 0 0 0 chr5 41040698 41040721 -162044811 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 358 361 119 23 chr5 41041395 41041968 -162043564 + L2 LINE L2 2002 2629 -685 25 0 0 0 chr5 41042391 41042416 -162043116 + AT_rich Low_complexity Low_complexity 1 25 0 604 239 40 40 chr5 41043388 41043564 -162041968 - L2 LINE L2 -974 2340 2165 1675 183 3 23 chr5 41044234 41044535 -162040997 + AluJb SINE Alu 2 296 -16 650 241 0 0 chr5 41044593 41044726 -162040806 + FLAM_A SINE Alu 1 133 0 1004 50 0 36 chr5 41045191 41045330 -162040202 + AluY SINE Alu 178 311 0 29 28 0 0 chr5 41045475 41045511 -162040021 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr5 41045957 41045979 -162039553 + AT_rich Low_complexity Low_complexity 1 22 0 275 210 258 16 chr5 41047235 41047359 -162038173 + MER20 DNA MER1_type 66 219 0 247 321 43 50 chr5 41048587 41048727 -162036805 + MER5A DNA MER1_type 21 159 -30 * 314 347 111 0 chr5 41048725 41048869 -162036663 - L2 LINE L2 -547 2767 2608 214 322 0 0 chr5 41050514 41050573 -162034959 - MIR3 SINE MIR -15 193 135 344 296 161 60 chr5 41052165 41052748 -162032784 + L1M2 LINE L1 758 1360 -5489 487 257 50 14 chr5 41053681 41053821 -162031711 + MIR3 SINE MIR 64 208 0 464 321 105 54 chr5 41054386 41054993 -162030539 + L2 LINE L2 1565 2202 -1112 430 313 168 11 chr5 41055005 41055184 -162030348 + MIR SINE MIR 48 254 -8 418 324 188 16 chr5 41055326 41055693 -162029839 - L2 LINE L2 -25 3247 2818 2251 92 0 7 chr5 41055807 41056099 -162029433 - AluSc SINE Alu -17 292 3 299 300 60 1 chr5 41056102 41056252 -162029280 + L1ME4a LINE L1 5336 5492 -670 1298 174 4 64 chr5 41056350 41056521 -162029011 - AluJb SINE Alu -11 301 152 2238 82 7 7 chr5 41056521 41056815 -162028717 - AluSg1 SINE Alu -15 294 1 1298 174 4 64 chr5 41056815 41056924 -162028608 - AluJb SINE Alu -160 152 38 1855 119 3 127 chr5 41057242 41057627 -162027905 + MER1B DNA MER1_type 1 337 0 24 32 0 0 chr5 41057800 41057831 -162027701 + AT_rich Low_complexity Low_complexity 1 31 0 2193 104 0 16 chr5 41058385 41058692 -162026840 + AluSx SINE Alu 3 304 -8 212 293 0 28 chr5 41058894 41059000 -162026532 + CT-rich Low_complexity Low_complexity 2 104 0 28 29 0 0 chr5 41059222 41059257 -162026275 + AT_rich Low_complexity Low_complexity 1 35 0 374 248 55 9 chr5 41059299 41059408 -162026124 - MARNA DNA Mariner -65 521 408 360 315 92 0 chr5 41059493 41059677 -162025855 - MARNA DNA Mariner -338 248 48 195 328 75 0 chr5 41059800 41059867 -162025665 - L2 LINE L2 0 3313 3242 26 50 0 0 chr5 41060485 41060525 -162025007 + AT_rich Low_complexity Low_complexity 1 40 0 29 47 0 0 chr5 41061021 41061064 -162024468 + AT_rich Low_complexity Low_complexity 1 43 0 334 306 72 27 chr5 41062948 41063059 -162022473 - MIR SINE MIR -59 149 34 302 279 0 13 chr5 41063262 41063341 -162022191 - MIR SINE MIR -104 158 81 616 262 107 39 chr5 41064859 41065244 -162020288 + L1ME4a LINE L1 5709 6119 -2 593 294 44 18 chr5 41065865 41066093 -162019439 - MIR SINE MIR 0 262 29 272 259 35 35 chr5 41066948 41067033 -162018499 - MER5A DNA MER1_type -21 168 84 38 61 0 0 chr5 41068119 41068185 -162017347 + AT_rich Low_complexity Low_complexity 1 66 0 25 31 0 0 chr5 41068359 41068391 -162017141 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr5 41068715 41068758 -162016774 + AT_rich Low_complexity Low_complexity 1 43 0 317 271 139 16 chr5 41069183 41069305 -162016227 - MIR SINE MIR -97 165 29 541 206 206 7 chr5 41069600 41069741 -162015791 - MER5B DNA MER1_type -2 176 8 1991 138 3 3 chr5 41070087 41070383 -162015149 + AluSx SINE Alu 5 300 -12 2175 88 0 27 chr5 41070866 41071163 -162014369 + AluY SINE Alu 13 301 -10 22 70 0 0 chr5 41071457 41071500 -162014032 + AT_rich Low_complexity Low_complexity 1 43 0 595 211 105 11 chr5 41072902 41073081 -162012451 - MIR SINE MIR -4 258 63 181 309 0 0 chr5 41073372 41073414 -162012118 - L3 LINE CR1 -12 1565 1524 21 36 0 0 chr5 41074035 41074063 -162011469 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr5 41074116 41074147 -162011385 + AT_rich Low_complexity Low_complexity 1 31 0 1285 179 160 0 chr5 41074346 41074609 -162010923 - AluJb SINE Alu -7 305 1 21 36 0 0 chr5 41075939 41075967 -162009565 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr5 41076310 41076336 -162009196 + AT_rich Low_complexity Low_complexity 1 26 0 2436 74 0 13 chr5 41076473 41076783 -162008749 + AluSq SINE Alu 1 306 -7 2025 137 3 3 chr5 41077540 41077839 -162007693 - AluSx SINE Alu -13 299 1 2337 97 0 6 chr5 41078009 41078320 -162007212 + AluSc SINE Alu 1 309 0 1964 132 14 10 chr5 41079496 41079792 -162005740 - AluSg SINE Alu -13 297 1 401 256 12 61 chr5 41079814 41079978 -162005554 - L1ME4a LINE L1 -1 6120 5965 557 89 0 0 chr5 41080820 41080899 -162004633 - MADE1 DNA Mariner 0 80 2 336 311 22 22 chr5 41081025 41081160 -162004372 - MER5A DNA MER1_type 0 189 55 1511 201 0 26 chr5 41081274 41081578 -162003954 - AluJo SINE Alu -15 297 2 22 35 0 0 chr5 41082580 41082609 -162002923 + AT_rich Low_complexity Low_complexity 1 29 0 522 274 38 65 chr5 41082786 41082972 -162002560 + MIR SINE MIR 12 192 -70 21 0 0 0 chr5 41082980 41083001 -162002531 + AT_rich Low_complexity Low_complexity 1 21 0 246 306 122 27 chr5 41083047 41083194 -162002338 - MER117 DNA MER1_type -36 161 1 2048 124 10 22 chr5 41083409 41083723 -162001809 - AluSq SINE Alu -3 310 1 345 240 27 0 chr5 41084185 41084260 -162001272 - L2 LINE L2 0 3272 3196 21 0 0 0 chr5 41084497 41084518 -162001014 + AT_rich Low_complexity Low_complexity 1 21 0 753 309 55 51 chr5 41084550 41084618 -162000914 - L2 LINE L2 0 3313 3247 1871 146 103 11 chr5 41084618 41084987 -162000545 + MER57A LTR ERV1 1 403 0 753 309 55 51 chr5 41084987 41085632 -161999900 - L2 LINE L2 -66 3247 2588 353 298 53 15 chr5 41086069 41086200 -161999332 - MIR SINE MIR -124 138 3 527 230 34 69 chr5 41086326 41086530 -161999002 + HAL1 LINE L1 22 218 -2289 492 250 64 64 chr5 41086518 41086738 -161998794 + HAL1 LINE L1 2288 2507 0 * 629 165 288 0 chr5 41087115 41087285 -161998247 + MER44D DNA MER2_type 32 520 -89 225 0 0 0 chr5 41088180 41088205 -161997327 + (TC)n Simple_repeat Simple_repeat 2 26 0 378 0 0 0 chr5 41088222 41088264 -161997268 + (TG)n Simple_repeat Simple_repeat 1 42 0 2211 118 27 30 chr5 41088544 41088909 -161996623 - THE1B LTR MaLR 0 364 1 466 196 59 20 chr5 41089105 41089207 -161996325 + MER5A DNA MER1_type 4 109 -80 721 297 50 0 chr5 41091875 41092094 -161993438 + MIR SINE MIR 18 247 -15 304 339 25 0 chr5 41092146 41092264 -161993268 - MIR SINE MIR -67 141 21 1794 116 0 0 chr5 41093906 41094138 -161991394 - AluSx SINE Alu -79 233 2 333 0 0 0 chr5 41094321 41094358 -161991174 + (CA)n Simple_repeat Simple_repeat 2 38 0 1066 78 0 0 chr5 41094772 41094900 -161990632 - AluSp/q SINE Alu -18 295 168 328 281 34 11 chr5 41095849 41095938 -161989594 + MIR SINE MIR 161 251 -11 258 333 94 0 chr5 41096062 41096158 -161989374 - L3 LINE CR1 -5 1572 1468 286 314 32 19 chr5 41097104 41097260 -161988272 + L2 LINE L2 2752 2909 -405 744 173 20 89 chr5 41097260 41097462 -161988070 + MER5A DNA MER1_type 1 188 -1 621 256 69 5 chr5 41097553 41097756 -161987776 + L2 LINE L2 2927 3142 -171 1791 110 41 21 chr5 41097778 41098068 -161987464 - MER1B DNA MER1_type -7 332 37 431 220 94 63 chr5 41098077 41098236 -161987296 + L2 LINE L2 3150 3313 0 194 262 24 107 chr5 41098666 41098750 -161986782 + MIR SINE MIR 66 142 -66 4055 222 90 11 chr5 41098807 41100900 -161984632 - L1ME2 LINE L1 -2 6162 3906 407 228 50 67 chr5 41100903 41101008 -161984524 - L1ME2 LINE L1 -2776 3370 3268 2029 140 20 0 chr5 41101008 41101300 -161984232 - AluSx SINE Alu -14 298 1 407 228 50 67 chr5 41101300 41101374 -161984158 - L1ME2 LINE L1 -2878 3268 3194 2419 63 0 44 chr5 41101510 41101825 -161983707 - AluSc SINE Alu -8 301 1 1416 159 60 3 chr5 41101829 41102112 -161983420 - L1MB2 LINE L1 -2 6169 5871 198 136 0 0 chr5 41102112 41102156 -161983376 + (T)n Simple_repeat Simple_repeat 1 44 0 20515 34 0 0 chr5 41102180 41105436 -161980096 - L1PA3 LINE L1 0 6155 2899 526 128 20 0 chr5 41105436 41105528 -161980004 - L1MB2 LINE L1 -305 5878 5782 257 82 16 49 chr5 41105528 41105589 -161979943 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 302 242 11 63 chr5 41105589 41105684 -161979848 - L1MC4 LINE L1 -1339 6703 6614 336 133 27 13 chr5 41105687 41105762 -161979770 + (TA)n Simple_repeat Simple_repeat 1 76 0 1663 183 11 57 chr5 41105770 41105982 -161979550 - L1MB2 LINE L1 -390 5793 5604 2671 89 13 5 chr5 41105982 41106354 -161979178 + THE1C LTR MaLR 1 375 0 1663 183 11 57 chr5 41106354 41106507 -161979025 - L1MB2 LINE L1 -579 5604 5445 1687 258 82 48 chr5 41106594 41107180 -161978352 + MER21B LTR ERV1 126 731 -132 290 262 0 24 chr5 41107354 41107438 -161978094 + MIR SINE MIR 73 154 -108 1513 210 82 8 chr5 41107445 41107811 -161977721 + MLT2D LTR ERVL 2 394 -20 2130 146 29 29 chr5 41107821 41108205 -161977327 - Tigger2a DNA MER2_type -50 384 1 276 30 0 0 chr5 41108208 41108241 -161977291 + (CA)n Simple_repeat Simple_repeat 2 34 0 257 139 0 0 chr5 41108241 41108277 -161977255 + MLT2D LTR ERVL 472 510 -5 258 305 42 59 chr5 41108571 41108689 -161976843 + L2 LINE L2 3157 3272 0 2233 112 0 3 chr5 41108806 41109109 -161976423 + AluSg SINE Alu 7 308 -2 2770 93 42 3 chr5 41109681 41110066 -161975466 + MLT2A1 LTR ERVL 1 400 -44 213 196 0 0 chr5 41110072 41110118 -161975414 + (TA)n Simple_repeat Simple_repeat 2 47 0 * 279 0 0 0 chr5 41110117 41110148 -161975384 + (TG)n Simple_repeat Simple_repeat 2 32 0 342 87 0 0 chr5 41110148 41110194 -161975338 + MLT2A1 LTR ERVL 408 453 0 1110 266 29 44 chr5 41110325 41110806 -161974726 + L1ME4a LINE L1 5567 6040 -81 1081 203 56 65 chr5 41113900 41114328 -161971204 - L1MC5 LINE L1 -48 7913 7490 180 280 40 0 chr5 41114517 41114567 -161970965 + MIR SINE MIR 84 135 -73 308 305 92 30 chr5 41114754 41114885 -161970647 - MER5A DNA MER1_type -5 184 46 218 173 0 19 chr5 41117367 41117419 -161968113 + CT-rich Low_complexity Low_complexity 1 51 0 591 272 5 11 chr5 41117470 41117654 -161967878 + L1MC5 LINE L1 7735 7917 -44 1644 210 17 14 chr5 41118117 41118465 -161967067 - MLT1A1 LTR MaLR 0 365 17 315 0 0 0 chr5 41118649 41118684 -161966848 + (CA)n Simple_repeat Simple_repeat 1 35 0 252 298 51 51 chr5 41120212 41120370 -161965162 - MLT1J2 LTR MaLR -21 429 272 1158 152 71 9 chr5 41120581 41120805 -161964727 - AluJb SINE Alu -54 258 21 1070 235 167 46 chr5 41121042 41121587 -161963945 + MLT1L LTR MaLR 5 615 0 1329 231 100 39 chr5 41121663 41122121 -161963411 + MLT1D LTR MaLR 20 505 0 468 0 0 0 chr5 41122296 41122348 -161963184 + (TG)n Simple_repeat Simple_repeat 2 53 0 227 302 0 121 chr5 41122753 41122869 -161962663 - L2 LINE L2 -219 3053 2952 545 261 135 80 chr5 41123269 41123706 -161961826 + MLT1L LTR MaLR 145 605 -10 338 359 19 0 chr5 41123712 41123818 -161961714 - L2 LINE L2 -27 3245 3138 * 492 261 37 78 chr5 41123803 41124021 -161961511 + MIR SINE MIR 31 239 -23 1512 268 83 52 chr5 41124176 41126098 -161959434 - L1ME LINE L1 -3235 2980 1042 9881 133 17 14 chr5 41126251 41128981 -161956551 - L1MA2 LINE L1 -2 7721 4979 2468 141 32 2 chr5 41128981 41129386 -161956146 + MER75 DNA T2_type 1 417 -97 2912 94 14 48 chr5 41129386 41129887 -161955645 + L1M1 LINE L1 2460 2943 -4622 686 123 0 18 chr5 41129887 41130001 -161955531 + MER75 DNA T2_type 393 504 0 6007 173 22 5 chr5 41130001 41131777 -161953755 - L1MA2 LINE L1 -2583 4982 3174 3194 24 0 0 chr5 41131775 41132187 -161953345 - L1PA2 LINE L1 -756 5390 4979 * 6733 14 3 0 chr5 41132187 41132955 -161952577 + L1PA2 LINE L1 5384 6155 0 10009 162 54 39 chr5 41132974 41135747 -161949785 - L1MA2 LINE L1 -4376 3189 15 22 0 0 0 chr5 41135802 41135824 -161949708 + AT_rich Low_complexity Low_complexity 1 22 0 301 344 45 19 chr5 41136081 41136235 -161949297 - L1ME LINE L1 -5901 304 147 181 329 145 66 chr5 41136819 41136971 -161948561 + L2 LINE L2 2924 3087 -185 227 222 0 14 chr5 41137106 41137178 -161948354 + GA-rich Low_complexity Low_complexity 2 72 0 467 261 67 42 chr5 41137481 41137646 -161947886 + MIR SINE MIR 28 196 -66 492 48 0 0 chr5 41137732 41137795 -161947737 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 387 0 0 0 chr5 41137812 41137855 -161947677 + (TG)n Simple_repeat Simple_repeat 2 44 0 185 326 76 30 chr5 41138101 41138233 -161947299 + L2 LINE L2 3176 3313 0 2600 34 9 0 chr5 41139479 41139801 -161945731 - LTR17 LTR ERV1 -455 325 1 2218 59 7 0 chr5 41139801 41140091 -161945441 - HERV17 LTR ERV1 0 8626 8335 259 95 0 0 chr5 41140078 41140120 -161945412 - HERV17 LTR ERV1 -1075 7551 7510 * 9972 39 0 0 chr5 41140113 41141335 -161944197 - HERV17 LTR ERV1 -2607 6019 4798 * 16164 43 3 1 chr5 41141334 41143345 -161942187 - HERV17 LTR ERV1 -4661 3965 1952 3903 76 0 6 chr5 41143374 41143902 -161941630 - LTR17 LTR ERV1 0 780 256 774 247 6 17 chr5 41144006 41144184 -161941348 - MER5B DNA MER1_type 0 178 3 2348 34 41 10 chr5 41144810 41145103 -161940429 - AluY SINE Alu -9 302 1 546 155 15 110 chr5 41145611 41145714 -161939818 + Charlie5 DNA MER1_type 2444 2520 -104 2208 96 10 7 chr5 41145714 41146006 -161939526 - AluSx SINE Alu -19 293 1 546 155 15 110 chr5 41146006 41146102 -161939430 + Charlie5 DNA MER1_type 2520 2624 0 280 84 0 127 chr5 41147444 41147515 -161938017 + L1MA1 LINE L1 6244 6305 0 881 257 113 19 chr5 41148364 41148675 -161936857 + Zaphod DNA AcHobo 1 340 -3691 598 163 23 0 chr5 41148685 41148814 -161936718 + Zaphod DNA AcHobo 587 718 -3313 311 139 67 129 chr5 41148817 41149011 -161936521 + Zaphod DNA AcHobo 828 1009 -3022 * 1220 202 125 20 chr5 41148979 41149380 -161936152 + Zaphod DNA AcHobo 3589 4031 0 392 322 46 35 chr5 41150027 41150201 -161935331 + MER5B DNA MER1_type 1 176 -2 292 231 192 0 chr5 41150529 41150607 -161934925 - L2 LINE L2 0 3272 3180 229 273 20 10 chr5 41150692 41150791 -161934741 - L1MCa LINE L1 -4857 1569 1470 21 0 0 0 chr5 41150961 41150982 -161934550 + AT_rich Low_complexity Low_complexity 1 21 0 392 161 0 11 chr5 41151082 41151169 -161934363 + CT-rich Low_complexity Low_complexity 4 89 0 2219 261 67 13 chr5 41151223 41151878 -161933654 + L1MEc LINE L1 44 743 -5653 2691 105 5 0 chr5 41151878 41152251 -161933281 + THE1C LTR MaLR 1 375 0 2219 261 67 13 chr5 41152251 41152307 -161933225 + L1MEc LINE L1 743 794 -5602 1967 118 60 0 chr5 41152309 41152623 -161932909 - L1P4 LINE L1 -513 5655 5323 3156 83 2 0 chr5 41152623 41153037 -161932495 + L1PA10 LINE L1 5746 6166 -2 853 257 73 38 chr5 41153053 41153586 -161931946 + L1MEc LINE L1 783 1334 -5062 260 336 0 0 chr5 41153596 41153742 -161931790 + L1MEc LINE L1 1407 1552 -4844 3326 194 20 59 chr5 41153763 41154745 -161930787 + L1M4 LINE L1 3954 4897 -1249 1474 225 11 14 chr5 41154745 41155100 -161930432 - MLT1A1 LTR MaLR -11 354 1 1397 196 43 15 chr5 41155103 41155501 -161930031 + L1M4 LINE L1 4897 5305 -841 522 201 79 32 chr5 41205840 41206029 -161879503 + L1M3c LINE L1 1181 1378 -4763 13195 174 22 30 chr5 41206036 41209258 -161876274 + L1P4 LINE L1 1011 4220 -3364 2816 121 15 6 chr5 41209242 41209933 -161875599 + L1P4 LINE L1 6416 7110 -489 * 411 259 159 7 chr5 41210414 41210654 -161874878 - L2 LINE L2 0 3313 2979 207 279 33 98 chr5 41210672 41210855 -161874677 - MIR SINE MIR -19 243 73 555 252 54 99 chr5 41210892 41211317 -161874215 - L1M4 LINE L1 -1901 4245 3840 1938 145 3 0 chr5 41211344 41211650 -161873882 + AluSx SINE Alu 1 307 0 228 342 8 0 chr5 41211660 41211777 -161873755 - L1ME3A LINE L1 -14 6156 6039 370 325 47 14 chr5 41211907 41212119 -161873413 - L1MEc LINE L1 -4240 2156 1938 1085 224 94 118 chr5 41212154 41212847 -161872685 - L1ME3A LINE L1 -1 6169 5494 1233 109 25 10 chr5 41212848 41213049 -161872483 + LTR56 LTR ERV1 1 204 -241 1324 189 104 76 chr5 41213049 41213515 -161872017 - MER66A LTR ERV1 0 478 97 834 164 13 66 chr5 41213584 41213852 -161871680 + LTR56 LTR ERV1 201 432 -5 1753 168 17 13 chr5 41213942 41214240 -161871292 + AluJo SINE Alu 6 304 -8 261 268 41 0 chr5 41214273 41214370 -161871162 - L1ME3A LINE L1 -998 5361 5261 430 269 35 14 chr5 41214377 41214522 -161871010 - MLT1J2 LTR MaLR -298 152 5 989 167 58 0 chr5 41214741 41214915 -161870617 + MSTA LTR MaLR 1 184 -244 2606 127 0 93 chr5 41215022 41215528 -161870004 - MER75 DNA T2_type -55 459 1 1135 142 80 50 chr5 41215528 41215767 -161869765 + MSTA LTR MaLR 183 428 0 503 335 45 0 chr5 41215885 41216085 -161869447 + LTR50 LTR ERVL 476 684 -111 200 309 15 0 chr5 41217069 41217137 -161868395 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 2095 113 10 0 chr5 41218490 41218783 -161866749 + AluSq SINE Alu 1 296 -17 324 172 0 45 chr5 41219047 41219119 -161866413 - Alu SINE Alu -256 46 1 4886 175 93 30 chr5 41219119 41221175 -161864357 - L1MC2 LINE L1 -43 7096 4923 339 231 8 60 chr5 41221251 41221385 -161864147 - L1MC2 LINE L1 -2887 4054 3928 22 0 0 0 chr5 41221419 41221441 -161864091 + AT_rich Low_complexity Low_complexity 1 22 0 314 98 98 0 chr5 41221442 41221503 -161864029 - L1MA6 LINE L1 -5 6295 6229 24 32 0 0 chr5 41222445 41222476 -161863056 + AT_rich Low_complexity Low_complexity 1 31 0 239 254 17 164 chr5 41225181 41225358 -161860174 - MIR SINE MIR -40 222 72 560 216 9 9 chr5 41225975 41226086 -161859446 + MIR SINE MIR 5 115 -147 182 194 0 0 chr5 41226134 41226165 -161859367 + MIR SINE MIR 203 233 -29 601 76 93 8 chr5 41227128 41227246 -161858286 - MER3 DNA MER1_type 0 2596 2469 348 200 31 0 chr5 41227241 41227306 -161858226 - MER3 DNA MER1_type -103 106 40 * 300 398 54 0 chr5 41227727 41227948 -161857584 + L2 LINE L2 2511 2743 -571 1822 115 0 21 chr5 41227970 41228249 -161857283 - AluSg SINE Alu 0 310 38 800 242 181 47 chr5 41228343 41228769 -161856763 + L2 LINE L2 1711 2193 -1121 2300 256 35 25 chr5 41228871 41229586 -161855946 - L1MC2 LINE L1 -4896 1527 806 244 321 99 23 chr5 41229716 41229847 -161855685 + L2 LINE L2 3171 3311 -2 705 306 130 9 chr5 41230791 41231114 -161854418 - L3 LINE CR1 -15 1562 1201 249 233 50 0 chr5 41231321 41231381 -161854151 - L2 LINE L2 0 3313 3251 382 331 156 29 chr5 41231783 41232245 -161853287 - L3 LINE CR1 -22 1555 977 368 326 174 6 chr5 41233433 41233611 -161851921 - MIR SINE MIR -7 255 48 194 204 0 19 chr5 41233682 41233736 -161851796 + GA-rich Low_complexity Low_complexity 2 54 0 1939 176 85 22 chr5 41234676 41235137 -161850395 + LTR2B LTR ERV1 1 490 0 21 57 0 0 chr5 41235839 41235874 -161849658 + AT_rich Low_complexity Low_complexity 1 35 0 2293 100 3 0 chr5 41237501 41237802 -161847730 - AluSg SINE Alu -8 302 1 1564 160 0 22 chr5 41238070 41238338 -161847194 + AluJb SINE Alu 47 308 -4 2895 201 96 14 chr5 41238786 41239477 -161846055 + L1MC4 LINE L1 7250 8006 -36 1800 90 9 128 chr5 41239477 41239820 -161845712 - AluSq SINE Alu 0 303 2 2895 201 96 14 chr5 41239820 41239861 -161845671 + L1MC4 LINE L1 8006 8042 0 2521 259 137 11 chr5 41239905 41240824 -161844708 + L2 LINE L2 612 1646 -1668 1094 84 14 0 chr5 41240827 41241030 -161844502 - AluSc SINE Alu 0 359 155 901 40 0 0 chr5 41241031 41241132 -161844400 - AluSc SINE Alu -54 255 155 229 69 0 0 chr5 41241133 41241162 -161844370 - Alu SINE Alu -44 255 227 217 303 13 53 chr5 41241262 41241338 -161844194 + L2 LINE L2 2250 2322 -992 * 372 229 118 49 chr5 41241318 41241462 -161844070 + L2 LINE L2 3159 3312 -1 21 36 0 0 chr5 41241587 41241615 -161843917 + AT_rich Low_complexity Low_complexity 1 28 0 1748 148 86 12 chr5 41241880 41242204 -161843328 + MER7A DNA MER2_type 1 346 0 36 70 0 0 chr5 41243161 41243232 -161842300 + AT_rich Low_complexity Low_complexity 1 71 0 257 159 0 0 chr5 41243599 41243643 -161841889 + MIR SINE MIR 71 114 -148 41 72 0 0 chr5 41243878 41243961 -161841571 + AT_rich Low_complexity Low_complexity 1 83 0 934 152 0 0 chr5 41244971 41245109 -161840423 + AluJb SINE Alu 4 141 -171 240 35 0 0 chr5 41245126 41245155 -161840377 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 227 211 92 13 chr5 41245586 41245662 -161839870 + L1M4 LINE L1 5209 5290 -856 185 351 54 60 chr5 41246046 41246214 -161839318 - L2 LINE L2 -250 3022 2856 750 130 35 0 chr5 41247502 41247617 -161837915 + L1MA3 LINE L1 16 134 -7431 * 14605 154 44 16 chr5 41247615 41248637 -161836895 + L1MA3 LINE L1 1105 2097 -5468 1764 147 14 24 chr5 41248637 41248929 -161836603 + AluJb SINE Alu 1 289 -23 14605 154 44 16 chr5 41248929 41249902 -161835630 + L1MA3 LINE L1 2097 3183 -4382 3454 31 2 2 chr5 41249902 41250321 -161835211 + L1PA4 LINE L1 5734 6152 -3 14605 154 44 16 chr5 41250321 41250778 -161834754 + L1MA3 LINE L1 3183 3626 -3939 9831 166 45 56 chr5 41250764 41253699 -161831833 + L1MA3 LINE L1 4709 7613 -111 * 25 83 0 0 chr5 41254226 41254286 -161831246 + AT_rich Low_complexity Low_complexity 1 60 0 210 71 0 0 chr5 41254478 41254506 -161831026 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 315 286 68 61 chr5 41254533 41254553 -161830979 - L2 LINE L2 -209 3063 3045 2362 133 98 16 chr5 41254553 41254983 -161830549 + MLT1C LTR MaLR 1 465 -2 315 286 68 61 chr5 41254983 41255109 -161830423 - L2 LINE L2 -227 3045 2916 834 196 52 5 chr5 41255131 41255326 -161830206 + MER58B DNA MER1_type 16 341 0 649 227 77 31 chr5 41255341 41255535 -161829997 + MIR SINE MIR 60 262 0 209 335 144 46 chr5 41255619 41255813 -161829719 - L2 LINE L2 -400 2914 2702 421 282 0 0 chr5 41256140 41256243 -161829289 + MER94 DNA DNA 1 103 -31 465 300 111 62 chr5 41257940 41258407 -161827125 - L2 LINE L2 -887 2427 1938 1215 223 54 26 chr5 41258524 41258910 -161826622 + L1ME3 LINE L1 5765 6161 -1 7578 205 114 42 chr5 41259099 41260736 -161824796 + MER52A LTR ERV1 1 1755 0 328 312 33 107 chr5 41260791 41261128 -161824404 - L2 LINE L2 -1839 1475 1164 197 214 48 71 chr5 41261132 41261216 -161824316 - L2 LINE L2 -976 2338 2257 21 36 0 0 chr5 41262543 41262571 -161822961 + AT_rich Low_complexity Low_complexity 1 28 0 2138 122 0 3 chr5 41263319 41263622 -161821910 + AluSq SINE Alu 6 307 -6 547 302 44 28 chr5 41263857 41264105 -161821427 + L2 LINE L2 3061 3312 -1 716 140 9 0 chr5 41264324 41264438 -161821094 - AluJb SINE Alu -197 115 1 267 242 11 11 chr5 41264689 41264780 -161820752 + L1ME LINE L1 5766 5856 -265 1290 243 39 41 chr5 41265078 41265304 -161820228 - MLT1E2 LTR MaLR 0 626 400 1540 185 3 25 chr5 41265304 41265590 -161819942 - AluJo SINE Alu -32 280 1 1290 243 39 41 chr5 41265590 41265701 -161819831 - MLT1E2 LTR MaLR -226 400 290 549 105 19 57 chr5 41265714 41265819 -161819713 - L1MA9 LINE L1 -36 6276 6176 525 44 0 0 chr5 41265832 41265900 -161819632 + (TG)n Simple_repeat Simple_repeat 1 68 0 287 242 0 45 chr5 41266007 41266073 -161819459 - MLT1E2 LTR MaLR -563 63 1 234 91 0 0 chr5 41266269 41266302 -161819230 + (ATG)n Simple_repeat Simple_repeat 2 34 0 793 252 60 11 chr5 41267106 41267372 -161818160 + L1MCc LINE L1 25 303 -6120 589 307 50 29 chr5 41267456 41267697 -161817835 - MIR SINE MIR -3 259 14 584 222 167 0 chr5 41268040 41268202 -161817330 - L2 LINE L2 0 3313 3125 604 261 121 10 chr5 41268319 41268526 -161817006 - MLT1J LTR MaLR -77 434 205 2263 100 3 3 chr5 41268538 41268838 -161816694 + AluSp SINE Alu 1 300 -13 285 29 0 0 chr5 41272126 41272160 -161813372 + (TA)n Simple_repeat Simple_repeat 2 35 0 1576 261 37 29 chr5 41272854 41273442 -161812090 - L2 LINE L2 -3 3310 2639 1674 143 24 44 chr5 41273460 41273753 -161811779 - AluJo SINE Alu -25 287 1 256 232 18 0 chr5 41273771 41273827 -161811705 - L2 LINE L2 -750 2564 2508 209 171 0 0 chr5 41273997 41274032 -161811500 + (TTGG)n Simple_repeat Simple_repeat 3 37 0 628 104 31 0 chr5 41274032 41274128 -161811404 + U6 snRNA snRNA 2 100 -7 616 258 103 15 chr5 41274238 41274443 -161811089 + MIR SINE MIR 16 236 -26 196 319 124 44 chr5 41275699 41275812 -161809720 - MER5A DNA MER1_type -11 178 57 596 201 158 22 chr5 41275851 41276035 -161809497 + MER112 DNA MER1_type 34 242 -18 381 210 180 10 chr5 41276107 41276207 -161809325 - L2 LINE L2 0 3313 3197 339 232 72 0 chr5 41277640 41277709 -161807823 + MIR SINE MIR 20 93 -169 261 207 52 0 chr5 41277940 41277998 -161807534 - L2 LINE L2 -4 3309 3249 252 283 0 0 chr5 41278040 41278100 -161807432 - L2 LINE L2 -262 3051 2992 1025 272 42 0 chr5 41278477 41278760 -161806772 + LTR16C LTR ERVL 191 485 -6 503 296 65 15 chr5 41278920 41279119 -161806413 - MIR SINE MIR -26 236 28 272 331 73 68 chr5 41279255 41279503 -161806029 + L2 LINE L2 3022 3270 -2 466 322 106 49 chr5 41279904 41280168 -161805364 + L2 LINE L2 2994 3272 0 221 268 14 42 chr5 41280644 41280715 -161804817 + L2 LINE L2 3184 3252 -20 1126 247 149 18 chr5 41280969 41281588 -161803944 + L2 LINE L2 2630 3313 0 2376 78 31 65 chr5 41281652 41282038 -161803494 - THE1C LTR MaLR -2 373 1 391 276 49 0 chr5 41283029 41283152 -161802380 + MIR SINE MIR 22 150 -112 1029 207 80 4 chr5 41283718 41283969 -161801563 - L1MA9 LINE L1 -38 6274 6005 347 276 238 9 chr5 41284005 41284215 -161801317 - MIR SINE MIR 0 262 5 196 347 136 22 chr5 41286203 41286526 -161799006 + L2 LINE L2 2004 2394 -920 2034 122 10 7 chr5 41286526 41286830 -161798702 - AluSg SINE Alu -5 305 1 196 347 136 22 chr5 41286830 41286955 -161798577 + L2 LINE L2 2394 2503 -811 290 221 35 70 chr5 41287510 41287596 -161797936 - L2 LINE L2 0 3272 3190 2304 110 0 0 chr5 41288075 41288375 -161797157 + AluSq SINE Alu 1 300 -13 685 264 64 24 chr5 41288561 41288811 -161796721 - MIR SINE MIR 0 262 3 274 283 65 0 chr5 41289005 41289097 -161796435 - MIR SINE MIR -49 213 116 284 266 117 0 chr5 41290759 41290853 -161794679 - MIR SINE MIR -111 151 47 525 286 92 0 chr5 41290981 41291177 -161794355 + MER20 DNA MER1_type 2 215 -4 369 277 75 11 chr5 41292129 41292329 -161793203 - L1MC/D LINE L1 -463 5658 5533 963 252 27 0 chr5 41292772 41292994 -161792538 + MIR SINE MIR 33 260 -2 180 296 37 37 chr5 41293080 41293161 -161792371 + MIR3 SINE MIR 104 184 -24 1441 267 178 19 chr5 41293425 41294332 -161791200 - L2 LINE L2 -6 3307 2258 306 221 13 13 chr5 41294457 41294534 -161790998 - L1ME4a LINE L1 -81 6040 5964 34 24 0 0 chr5 41295335 41295376 -161790156 + AT_rich Low_complexity Low_complexity 1 41 0 315 288 0 0 chr5 41295761 41295841 -161789691 - L1M4 LINE L1 -1998 4148 4069 307 279 12 47 chr5 41296729 41296815 -161788717 - MIR SINE MIR -85 123 41 211 301 48 29 chr5 41299564 41299667 -161785865 - L2 LINE L2 -558 2756 2652 21 36 0 0 chr5 41301893 41301921 -161783611 + AT_rich Low_complexity Low_complexity 1 28 0 2517 57 0 3 chr5 41302178 41302478 -161783054 - AluY SINE Alu -12 299 1 21 57 0 0 chr5 41302571 41302606 -161782926 + AT_rich Low_complexity Low_complexity 1 35 0 3611 40 0 7 chr5 41303175 41303621 -161781911 - L1PA5 LINE L1 -4 6150 5708 232 237 140 0 chr5 41303926 41304019 -161781513 + HAL1 LINE L1 1208 1313 -1194 * 6071 127 41 13 chr5 41304014 41305231 -161780301 + L1MA4A LINE L1 5045 6290 -13 246 244 200 30 chr5 41305245 41305380 -161780152 + HAL1 LINE L1 1299 1456 -1051 1158 164 5 0 chr5 41305415 41305604 -161779928 + MER2 DNA MER2_type 1 190 -155 737 262 94 12 chr5 41305703 41305947 -161779585 - MLT1J2 LTR MaLR -132 318 55 2284 89 7 0 chr5 41306062 41306353 -161779179 + AluSq SINE Alu 1 293 -20 1606 228 102 54 chr5 41307231 41307748 -161777784 - MLT1F LTR MaLR 0 542 1 244 203 203 0 chr5 41308890 41308959 -161776573 + MER103 DNA DNA 12 94 -72 1360 104 5 15 chr5 41308975 41309177 -161776355 - AluSx SINE Alu -18 294 95 1607 87 0 0 chr5 41309177 41309385 -161776147 + MER11B LTR ERVK 6 213 -1023 835 87 0 0 chr5 41309411 41309515 -161776017 - AluSx SINE Alu -209 104 1 524 236 7 57 chr5 41309531 41309671 -161775861 - FLAM_A SINE Alu 0 133 1 961 241 28 31 chr5 41309792 41310078 -161775454 - L1MC5 LINE L1 -368 7672 7413 610 322 78 17 chr5 41311487 41311717 -161773815 - MIR SINE MIR -11 251 8 257 322 178 41 chr5 41313744 41314138 -161771394 + L2 LINE L2 2144 2591 -723 22 35 0 0 chr5 41314219 41314248 -161771284 + AT_rich Low_complexity Low_complexity 1 29 0 5184 66 0 0 chr5 41314248 41314898 -161770634 - L1PA6 LINE L1 -11 6143 5494 200 240 60 0 chr5 41315432 41315482 -161770050 + L2 LINE L2 3259 3311 -2 574 240 56 15 chr5 41315591 41315787 -161769745 - L1MC5 LINE L1 -34 7927 7724 212 347 222 18 chr5 41316142 41316309 -161769223 + MIR3 SINE MIR 3 203 -5 511 335 61 4 chr5 41316331 41316561 -161768971 - MIR SINE MIR 0 262 20 281 312 110 32 chr5 41317280 41317434 -161768098 - MIR SINE MIR -44 218 53 1017 278 108 10 chr5 41317593 41317999 -161767533 - MLT1J2 LTR MaLR 0 450 5 22 0 0 0 chr5 41318879 41318901 -161766631 + AT_rich Low_complexity Low_complexity 1 22 0 419 287 170 12 chr5 41319022 41319269 -161766263 - L1MC/D LINE L1 -2029 5779 5494 544 126 46 0 chr5 41319493 41319580 -161765952 - Tigger7 DNA MER2_type -1 2486 2396 * 2895 171 32 10 chr5 41319574 41320072 -161765460 - Tigger7 DNA MER2_type -208 525 17 25 31 0 0 chr5 41320232 41320264 -161765268 + AT_rich Low_complexity Low_complexity 1 32 0 296 287 155 16 chr5 41320798 41320927 -161764605 + MIR3 SINE MIR 19 165 -43 2017 37 0 0 chr5 41321364 41321606 -161763926 - L1PA4 LINE L1 -3 6152 5911 1996 227 73 73 chr5 41321924 41322747 -161762785 + L1ME3A LINE L1 5343 6165 -5 22 56 0 0 chr5 41323786 41323822 -161761710 + AT_rich Low_complexity Low_complexity 1 36 0 378 271 85 25 chr5 41324415 41324533 -161760999 - L2 LINE L2 -1 3312 3188 2207 96 13 7 chr5 41324868 41325170 -161760362 - AluSg SINE Alu -6 304 1 889 199 70 11 chr5 41327006 41327192 -161758340 - MER20 DNA MER1_type -17 202 6 735 234 208 21 chr5 41327201 41327676 -161757856 + L1MC5 LINE L1 7332 7895 -66 36843 59 8 6 chr5 41328001 41333718 -161751814 + L1P2 LINE L1 2 5722 -432 251 179 24 60 chr5 41335412 41335496 -161750036 - Tigger6b DNA MER2_type -763 834 754 2012 144 0 3 chr5 41336118 41336424 -161749108 - AluJb SINE Alu -7 305 1 254 232 155 0 chr5 41337022 41337125 -161748407 + MIR SINE MIR 54 171 -37 1733 198 57 37 chr5 41337721 41338125 -161747407 - MLT1F LTR MaLR -130 412 1 1130 190 17 13 chr5 41338246 41338478 -161747054 + MLT1F1 LTR MaLR 333 565 -2 281 254 141 7 chr5 41338975 41339117 -161746415 - L2 LINE L2 -2 3311 3151 420 249 24 115 chr5 41339964 41339997 -161745535 - L2 LINE L2 -494 2820 2786 606 191 9 17 chr5 41339997 41340112 -161745420 + MER81 DNA DNA 1 114 0 420 249 24 115 chr5 41340112 41340287 -161745245 - L2 LINE L2 -528 2786 2631 2012 120 4 0 chr5 41341243 41341518 -161744014 + AluSx SINE Alu 34 309 -3 302 202 258 16 chr5 41342843 41342967 -161742565 - MER20 DNA MER1_type 0 219 66 22 0 0 0 chr5 41344222 41344244 -161741288 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr5 41344690 41344726 -161740806 + AT_rich Low_complexity Low_complexity 1 36 0 1004 50 0 36 chr5 41344871 41345010 -161740522 - AluY SINE Alu 0 311 178 617 256 0 0 chr5 41345473 41345606 -161739926 - FLAM_A SINE Alu 0 133 1 1697 183 3 20 chr5 41345664 41345965 -161739567 - AluJb SINE Alu -16 296 1 787 271 133 75 chr5 41346634 41347183 -161738349 + L2 LINE L2 2165 2745 -569 305 262 233 0 chr5 41347527 41347630 -161737902 + L2 LINE L2 3182 3308 -5 2071 120 3 31 chr5 41449043 41449360 -161636172 + AluSq SINE Alu 1 308 -5 449 264 7 0 chr5 41449648 41449796 -161635736 + (TG)n Simple_repeat Simple_repeat 2 150 0 300 324 28 35 chr5 41451154 41451299 -161634233 + MIR SINE MIR 70 213 -49 236 261 14 0 chr5 41451492 41451561 -161633971 + HAL1 LINE L1 1 70 -2437 2063 114 49 3 chr5 41451588 41451938 -161633594 + L1MA2 LINE L1 5939 6304 0 23 0 0 0 chr5 41451938 41451961 -161633571 + AT_rich Low_complexity Low_complexity 1 23 0 198 270 40 14 chr5 41452076 41452150 -161633382 + MER5B DNA MER1_type 103 178 0 204 297 90 27 chr5 41452189 41452300 -161633232 - MER5A DNA MER1_type 0 189 72 * 234 313 48 12 chr5 41452218 41452301 -161633231 + MER5A DNA MER1_type 44 129 -60 209 296 61 98 chr5 41452380 41452512 -161633020 - MER5A DNA MER1_type -26 163 37 375 278 186 27 chr5 41453779 41454117 -161631415 + HAL1 LINE L1 1 392 -2115 282 29 0 0 chr5 41454183 41454218 -161631314 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 2069 94 7 4 chr5 41454218 41454494 -161631038 - AluSc SINE Alu -32 277 1 502 229 223 11 chr5 41455659 41455834 -161629698 + MIR SINE MIR 50 261 -1 434 286 40 16 chr5 41455945 41456071 -161629461 + L2 LINE L2 3140 3268 -4 621 241 64 75 chr5 41456881 41457163 -161628369 - LTR16C LTR ERVL -25 466 188 250 284 12 12 chr5 41457526 41457607 -161627925 - L3 LINE CR1 -308 1269 1189 1172 153 110 4 chr5 41457739 41457967 -161627565 + MLT1D LTR MaLR 248 499 -6 1215 232 30 57 chr5 41457967 41458492 -161627040 + L1M4 LINE L1 2276 2786 -3360 915 255 24 61 chr5 41458523 41459014 -161626518 + L1M4 LINE L1 2968 3440 -2706 763 190 3 129 chr5 41459009 41459320 -161626212 + L1ME1 LINE L1 5840 6111 -55 * 1646 154 44 7 chr5 41459320 41459798 -161625734 + L1MA5 LINE L1 5044 5534 -743 312 122 0 0 chr5 41459941 41459990 -161625542 - MADE1 DNA Mariner -30 50 2 4349 114 26 15 chr5 41459990 41460201 -161625331 + L1MA5 LINE L1 5568 5775 -525 2292 111 0 13 chr5 41460201 41460517 -161625015 + AluSx SINE Alu 1 312 0 4349 114 26 15 chr5 41460517 41461030 -161624502 + L1MA5 LINE L1 5775 6300 0 2225 84 0 4 chr5 41461202 41461476 -161624056 + AluSq SINE Alu 27 299 -14 231 235 24 47 chr5 41463273 41463358 -161622174 - LTR67 LTR ERVL 0 557 475 484 277 51 63 chr5 41463705 41464055 -161621477 + LTR16C LTR ERVL 146 491 0 181 299 119 0 chr5 41464170 41464237 -161621295 + L2 LINE L2 3198 3272 0 371 304 74 15 chr5 41464349 41464484 -161621048 + MIR SINE MIR 23 165 -97 210 200 0 55 chr5 41464531 41464586 -161620946 - MIR SINE MIR -98 164 113 822 181 6 30 chr5 41464809 41464975 -161620557 + MLT1A2 LTR MaLR 1 162 -212 2157 135 3 0 chr5 41465504 41465816 -161619716 + AluSq SINE Alu 1 313 0 365 274 88 36 chr5 41465932 41466151 -161619381 + L1MEc LINE L1 2185 2377 -3838 1037 201 59 70 chr5 41466245 41466633 -161618899 - L1MA8 LINE L1 -1 6290 5907 481 207 0 0 chr5 41466635 41466722 -161618810 + MER44D DNA MER2_type 1 357 -252 2149 138 10 50 chr5 41466724 41467226 -161618306 - L1MA8 LINE L1 -509 5791 5310 219 36 0 0 chr5 41467226 41467254 -161618278 + (TTG)n Simple_repeat Simple_repeat 1 28 0 936 78 0 0 chr5 41467357 41467473 -161618059 + AluSg/x SINE Alu 180 295 -14 6123 104 34 0 chr5 41467475 41468570 -161616962 - L1PA15 LINE L1 -16 6149 5040 1975 162 30 5 chr5 41468570 41468977 -161616555 - L1MA8 LINE L1 -1315 4831 4415 3153 228 17 11 chr5 41469001 41469935 -161615597 + L1MEc LINE L1 2509 3448 -2767 2067 115 12 18 chr5 41469942 41470296 -161615236 + L1PB3 LINE L1 5819 6170 0 982 89 62 42 chr5 41470296 41470546 -161614986 - Tigger3(Golem) DNA MER2_type -460 2568 2310 947 214 59 0 chr5 41470544 41470731 -161614801 - Tigger3(Golem) DNA MER2_type -2831 198 1 * 232 319 31 74 chr5 41470948 41471111 -161614421 - LTR16C LTR ERVL -263 228 73 2335 90 0 0 chr5 41471445 41471735 -161613797 + AluSc SINE Alu 1 290 -19 281 295 63 30 chr5 41471955 41472223 -161613309 + HAL1b LINE L1 75 351 -997 295 187 151 29 chr5 41472258 41472397 -161613135 + HAL1b LINE L1 333 488 -860 239 269 113 7 chr5 41472421 41472562 -161612970 + HAL1b LINE L1 531 686 -662 1820 217 39 31 chr5 41472647 41473316 -161612216 + L1ME1 LINE L1 2642 3315 -2900 910 186 0 68 chr5 41473346 41473594 -161611938 + AluJb SINE Alu 1 231 -81 3908 240 51 19 chr5 41473750 41475145 -161610387 + L1ME1 LINE L1 3469 4908 -1307 810 195 52 27 chr5 41475163 41475206 -161610326 + L1ME1 LINE L1 5234 5274 -957 2133 113 26 0 chr5 41475206 41475508 -161610024 + AluSx SINE Alu 3 312 0 810 195 52 27 chr5 41475508 41475784 -161609748 + L1ME1 LINE L1 5274 5554 -677 1329 106 6 6 chr5 41475786 41475966 -161609566 + AluSg/x SINE Alu 130 309 -3 1140 225 75 6 chr5 41475981 41476314 -161609218 + L1ME1 LINE L1 5578 5933 -302 996 85 0 0 chr5 41476537 41476667 -161608865 - AluSp/q SINE Alu -10 303 174 882 292 102 9 chr5 41476767 41477199 -161608333 - HAL1 LINE L1 -1809 698 227 244 247 0 41 chr5 41477274 41477347 -161608185 - HAL1 LINE L1 -2402 105 36 2379 166 23 13 chr5 41477353 41477824 -161607708 - L1MB8 LINE L1 -10 6168 5693 3064 127 7 38 chr5 41477824 41478372 -161607160 - L1PA15 LINE L1 -4 6161 5628 2501 151 33 27 chr5 41478555 41479283 -161606249 - L1PA15 LINE L1 -616 5549 4815 * 5197 174 6 29 chr5 41479281 41480411 -161605121 + L1P LINE L1 3748 4851 -1295 2250 112 23 3 chr5 41480445 41480750 -161604782 - AluSq SINE Alu -2 311 1 1728 266 31 48 chr5 41480865 41481629 -161603903 - L1MB8 LINE L1 -577 5601 4848 1628 136 3 28 chr5 41481638 41481925 -161603607 + L1MB1 LINE L1 5692 5971 -197 530 165 0 0 chr5 41482034 41482125 -161603407 + AluSg/x SINE Alu 212 302 -7 2040 122 7 3 chr5 41482285 41482580 -161602952 - AluSx SINE Alu -16 296 1 190 373 0 0 chr5 41482583 41482650 -161602882 - L2 LINE L2 -482 2832 2766 475 218 296 0 chr5 41482658 41482800 -161602732 - MER5A DNA MER1_type -2 187 4 2221 89 3 0 chr5 41483538 41483871 -161601661 - AluSp SINE Alu 0 334 1 257 340 165 0 chr5 41484033 41484130 -161601402 - L2 LINE L2 -4 3268 3156 286 231 77 18 chr5 41484221 41484390 -161601142 + L1 LINE L1 5197 5375 -771 2289 104 0 0 chr5 41484509 41484806 -161600726 - AluSg SINE Alu -13 297 1 2240 96 3 7 chr5 41485357 41485659 -161599873 - AluSx SINE Alu -9 303 3 1618 174 76 0 chr5 41485978 41486253 -161599279 + AluJb SINE Alu 5 300 -12 2282 89 7 3 chr5 41486256 41486548 -161598984 + AluSc SINE Alu 2 294 -15 227 286 0 59 chr5 41486974 41487093 -161598439 + L1MC5 LINE L1 7806 7917 -44 421 256 36 67 chr5 41487189 41487384 -161598148 - L1ME LINE L1 -440 5681 5493 2332 108 0 13 chr5 41487631 41487946 -161597586 - AluSx SINE Alu -1 311 1 683 277 71 31 chr5 41488207 41488683 -161596849 - L1MB8 LINE L1 -1295 4851 4357 2102 117 3 7 chr5 41488855 41489155 -161596377 + AluSx SINE Alu 1 299 -13 244 345 0 24 chr5 41490688 41490772 -161594760 - L2 LINE L2 -42 3230 3149 1093 283 120 18 chr5 41494471 41494912 -161590620 - LTR33 LTR ERVL 0 521 36 404 285 24 24 chr5 41495024 41495147 -161590385 + MER5C DNA MER1_type 6 128 -196 26 0 0 0 chr5 41495314 41495340 -161590192 + AT_rich Low_complexity Low_complexity 1 26 0 307 277 24 0 chr5 41495547 41495630 -161589902 + L1ME LINE L1 91 175 -5895 1820 134 0 0 chr5 41495645 41495891 -161589641 + AluSg SINE Alu 1 246 -64 844 126 0 31 chr5 41496073 41496200 -161589332 - AluJo SINE Alu -78 234 112 857 229 200 4 chr5 41496204 41496484 -161589048 + L1MC4a LINE L1 6633 6905 -903 1992 216 96 35 chr5 41496545 41497120 -161588412 + L1MC4 LINE L1 7325 7934 -108 289 172 109 141 chr5 41497175 41497256 -161588276 + L1MC4 LINE L1 7919 7996 -46 2421 101 0 0 chr5 41497256 41497564 -161587968 - AluSg SINE Alu 0 310 3 289 172 109 141 chr5 41497564 41497610 -161587922 + L1MC4 LINE L1 7996 8042 0 23 33 0 0 chr5 41497618 41497648 -161587884 + AT_rich Low_complexity Low_complexity 1 30 0 279 231 19 46 chr5 41497932 41498040 -161587492 + MER114 LTR ERV 544 648 0 28 29 0 0 chr5 41498042 41498077 -161587455 + AT_rich Low_complexity Low_complexity 1 35 0 872 290 73 66 chr5 41498130 41498275 -161587257 + MER114 LTR ERV 1 144 -504 2483 74 3 0 chr5 41498275 41498573 -161586959 - AluSp SINE Alu -14 299 1 872 290 73 66 chr5 41498573 41499072 -161586460 + MER114 LTR ERV 144 648 0 5712 96 4 4 chr5 41499175 41499953 -161585579 - L1PA8 LINE L1 0 6172 5395 234 203 17 0 chr5 41500920 41500979 -161584553 + T-rich Low_complexity Low_complexity 2 61 0 286 250 38 0 chr5 41501544 41501624 -161583908 + MIR SINE MIR 124 206 -56 460 309 65 52 chr5 41501830 41502121 -161583411 - L3 LINE CR1 -561 1016 722 2022 105 0 83 chr5 41502153 41502477 -161583055 + AluSq SINE Alu 1 297 -16 1779 83 133 8 chr5 41502479 41502743 -161582789 + AluSg1 SINE Alu 1 297 -12 251 303 144 46 chr5 41502771 41502966 -161582566 + MIR SINE MIR 48 261 -1 30 59 0 0 chr5 41503002 41503053 -161582479 + AT_rich Low_complexity Low_complexity 1 51 0 29 0 0 0 chr5 41503078 41503107 -161582425 + AT_rich Low_complexity Low_complexity 1 29 0 195 129 0 0 chr5 41503683 41503714 -161581818 + (TC)n Simple_repeat Simple_repeat 2 32 0 563 278 86 0 chr5 41505316 41505467 -161580065 - MIR3 SINE MIR -13 195 32 570 274 46 23 chr5 41505678 41505897 -161579635 + L1ME4a LINE L1 5605 5828 -293 793 236 46 0 chr5 41505934 41506129 -161579403 - MIR SINE MIR 0 262 59 275 299 47 28 chr5 41506898 41507005 -161578527 - L2 LINE L2 -1 3271 3163 976 255 84 47 chr5 41507031 41507474 -161578058 + MLT1G3 LTR MaLR 33 587 -8 307 326 77 45 chr5 41507576 41507978 -161577554 + L2 LINE L2 2347 2761 -553 802 306 61 4 chr5 41508722 41508983 -161576549 + MLT1J LTR MaLR 56 331 -180 2531 91 45 0 chr5 41509847 41510199 -161575333 - LTR8 LTR ERV1 0 691 324 439 253 97 13 chr5 41510228 41510382 -161575150 + L1MA10 LINE L1 6165 6331 -3 247 241 26 69 chr5 41510401 41510517 -161575015 + L1P LINE L1 4895 5005 -1141 204 156 0 22 chr5 41510527 41510539 -161574993 + A-rich Low_complexity Low_complexity 2 13 -32 796 204 0 0 chr5 41510539 41510671 -161574861 + FLAM_A SINE Alu 1 132 -1 204 156 0 22 chr5 41510671 41510703 -161574829 + A-rich Low_complexity Low_complexity 13 45 0 960 135 0 0 chr5 41510921 41511054 -161574478 + FLAM_C SINE Alu 1 133 0 330 26 0 0 chr5 41511055 41511094 -161574438 + (TA)n Simple_repeat Simple_repeat 2 40 0 682 235 238 3 chr5 41511838 41512178 -161573354 + L2 LINE L2 2036 2455 -859 940 274 162 27 chr5 41512364 41512925 -161572607 + L2 LINE L2 2150 2786 -528 595 212 22 7 chr5 41512941 41513078 -161572454 + L2 LINE L2 3162 3300 -13 2225 89 7 3 chr5 41513376 41513668 -161571864 + AluSp SINE Alu 1 293 -20 817 146 15 8 chr5 41513686 41513816 -161571716 + AluJo SINE Alu 7 137 -175 246 62 0 0 chr5 41515047 41515079 -161570453 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2549 46 13 0 chr5 41515252 41515559 -161569973 - AluY SINE Alu 0 311 1 181 319 21 49 chr5 41515734 41515878 -161569654 + L2 LINE L2 2920 3059 -213 547 260 48 78 chr5 41516130 41516399 -161569133 + MIR SINE MIR 2 262 0 1444 164 33 52 chr5 41516569 41516671 -161568861 - MER33 DNA MER1_type -2261 324 222 1564 183 0 22 chr5 41516671 41516945 -161568587 - AluJb SINE Alu -44 268 1 1444 164 33 52 chr5 41516945 41517172 -161568360 - MER33 DNA MER1_type -2363 222 1 238 304 88 29 chr5 41517284 41517386 -161568146 + MIR SINE MIR 30 137 -71 2018 87 11 0 chr5 41517526 41517791 -161567741 - AluSg SINE Alu -11 299 32 974 112 0 28 chr5 41517831 41517994 -161567538 - AluSp SINE Alu 0 303 145 191 327 53 44 chr5 41519925 41520038 -161565494 - L2 LINE L2 -18 3295 3182 239 354 0 49 chr5 41520290 41520434 -161565098 + MIR SINE MIR 80 216 -46 196 293 73 0 chr5 41521246 41521328 -161564204 - L2 LINE L2 -32 3240 3153 180 239 87 0 chr5 41521455 41521501 -161564031 + L2 LINE L2 3223 3272 0 209 250 21 0 chr5 41523172 41523220 -161562312 - L2 LINE L2 -86 3227 3179 21 0 0 0 chr5 41523727 41523748 -161561784 + AT_rich Low_complexity Low_complexity 1 21 0 741 240 62 61 chr5 41527760 41528032 -161557500 - MIR SINE MIR 0 262 8 180 0 0 0 chr5 41529102 41529122 -161556410 + (A)n Simple_repeat Simple_repeat 1 20 0 279 79 0 0 chr5 41529905 41529943 -161555589 + (CA)n Simple_repeat Simple_repeat 1 38 0 216 67 0 0 chr5 41530027 41530057 -161555475 + (CA)n Simple_repeat Simple_repeat 1 30 0 1396 164 4 35 chr5 41530190 41530477 -161555055 + AluJb SINE Alu 51 329 0 629 213 148 20 chr5 41530480 41530682 -161554850 - MIR SINE MIR -21 241 14 235 243 14 43 chr5 41531858 41531928 -161553604 + MIR SINE MIR 2 69 -193 412 241 179 25 chr5 41532992 41533154 -161552378 + MIR3 SINE MIR 16 202 -6 297 75 0 0 chr5 41533208 41533248 -161552284 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 2191 92 0 0 chr5 41533763 41534045 -161551487 + AluSg1 SINE Alu 7 288 -21 198 0 0 0 chr5 41535258 41535280 -161550252 + (T)n Simple_repeat Simple_repeat 1 22 0 960 245 140 30 chr5 41535452 41535823 -161549709 - L1MC4a LINE L1 -1851 5957 5546 1403 177 117 0 chr5 41537200 41537466 -161548066 + AluJo SINE Alu 1 297 -15 241 270 9 135 chr5 41537790 41537901 -161547631 - MIR3 SINE MIR -15 193 97 389 266 63 38 chr5 41537907 41538065 -161547467 + MIR SINE MIR 34 195 -67 1020 260 116 50 chr5 41538470 41538754 -161546778 - L2 LINE L2 -1 3312 3048 2229 105 0 0 chr5 41538754 41539048 -161546484 - AluSx SINE Alu -18 294 1 1020 260 116 50 chr5 41539048 41539442 -161546090 - L2 LINE L2 -265 3048 2587 272 295 71 54 chr5 41539456 41539568 -161545964 - MIR SINE MIR -59 149 36 614 64 65 2 chr5 41539681 41539773 -161545759 + MLT1E LTR MaLR 80 169 -424 2136 107 3 31 chr5 41540670 41540987 -161544545 + AluSg SINE Alu 1 308 -2 197 277 119 10 chr5 41541443 41541544 -161543988 + MIR SINE MIR 3 114 -148 382 225 11 11 chr5 41541560 41541649 -161543883 + MIR SINE MIR 69 157 -105 402 257 34 73 chr5 41542151 41542272 -161543260 + MIR SINE MIR 16 138 -124 2165 128 3 0 chr5 41542272 41542576 -161542956 + AluSx SINE Alu 1 305 -7 402 257 34 73 chr5 41542576 41542650 -161542882 + MIR SINE MIR 138 213 -49 313 330 52 19 chr5 41544690 41544902 -161540630 + L1ME LINE L1 5609 5827 -294 722 281 74 4 chr5 41545030 41545261 -161540271 + MIR SINE MIR 13 259 -3 201 74 0 0 chr5 41546654 41546681 -161538851 + (T)n Simple_repeat Simple_repeat 1 27 0 314 171 29 14 chr5 41549265 41549335 -161536197 - Charlie8 DNA MER1_type -2003 414 344 263 167 45 30 chr5 41549436 41549502 -161536030 - Charlie8 DNA MER1_type -2256 161 95 295 122 232 37 chr5 41550722 41550804 -161534728 - L2 LINE L2 0 3313 3216 989 207 194 45 chr5 41551019 41551232 -161534300 + MER113 DNA MER1_type? 61 241 -280 2211 116 0 0 chr5 41551232 41551569 -161533963 + AluSx SINE Alu 1 337 0 989 207 194 45 chr5 41551569 41551754 -161533778 + MER113 DNA MER1_type? 241 521 0 224 340 124 0 chr5 41551772 41551869 -161533663 - L3 LINE CR1 -79 1498 1390 315 256 273 0 chr5 41552462 41552583 -161532949 + MIR SINE MIR 106 259 -3 462 18 0 0 chr5 41553296 41553351 -161532181 + (TG)n Simple_repeat Simple_repeat 2 56 0 386 266 70 31 chr5 41553425 41553553 -161531979 - L2 LINE L2 -4 3268 3136 832 121 24 12 chr5 41553719 41553884 -161531648 + CT-rich Low_complexity Low_complexity 2 168 0 181 260 62 52 chr5 41554085 41554181 -161531351 - L3 LINE CR1 -27 1550 1454 474 256 267 39 chr5 41554208 41554571 -161530961 - L3 LINE CR1 -218 1359 914 442 292 8 8 chr5 41555133 41555253 -161530279 - MER5B DNA MER1_type -56 122 3 267 311 80 71 chr5 41555330 41555555 -161529977 + L2 LINE L2 3015 3241 -31 2386 83 0 0 chr5 41555934 41556234 -161529298 - AluSg SINE Alu -10 300 1 785 251 68 0 chr5 41556401 41556592 -161528940 + MIR SINE MIR 38 241 -21 350 324 81 16 chr5 41556735 41556920 -161528612 - L1ME LINE L1 -362 5759 5563 336 48 0 0 chr5 41558244 41558286 -161527246 + (CA)n Simple_repeat Simple_repeat 2 43 0 2352 153 3 5 chr5 41559802 41560182 -161525350 - L1MB8 LINE L1 0 6178 5800 234 125 0 0 chr5 41560215 41560247 -161525285 + L1ME LINE L1 5774 5805 -361 2341 162 56 54 chr5 41560274 41560811 -161524721 - L1MB8 LINE L1 -382 5802 5265 2024 93 0 63 chr5 41560973 41561319 -161524213 + AluSg SINE Alu 1 327 0 573 150 20 0 chr5 41561761 41561861 -161523671 + L1MB2 LINE L1 6067 6168 -3 2121 108 16 7 chr5 41562580 41562885 -161522647 - AluSg1 SINE Alu -1 308 1 2225 106 3 17 chr5 41566326 41566627 -161518905 + AluSp SINE Alu 6 302 -11 366 186 78 142 chr5 41567549 41567936 -161517596 - L1MC5 LINE L1 -236 7725 7364 228 67 0 0 chr5 41568412 41568442 -161517090 + (A)n Simple_repeat Simple_repeat 1 30 0 267 277 69 19 chr5 41568847 41569006 -161516526 + L2 LINE L2 2953 3119 -153 267 31 0 0 chr5 41569585 41569617 -161515915 + (CA)n Simple_repeat Simple_repeat 1 32 0 180 247 309 12 chr5 41570978 41571032 -161514500 + L2 LINE L2 3150 3254 -18 182 148 0 0 chr5 41571032 41571059 -161514473 + MIR SINE MIR 224 250 -12 2265 106 7 0 chr5 41571111 41571412 -161514120 - AluSg SINE Alu -7 303 1 456 270 23 16 chr5 41573474 41573627 -161511905 - MIR SINE MIR -63 145 19 232 176 39 0 chr5 41574030 41574081 -161511451 - L2 LINE L2 -2 3270 3218 1478 289 113 17 chr5 41574687 41575227 -161510305 + L3 LINE CR1 533 1124 -453 231 354 87 34 chr5 41575253 41575459 -161510073 - L2 LINE L2 -8 3264 3048 220 311 66 54 chr5 41575649 41575974 -161509558 + L3 LINE CR1 1106 1470 -107 586 235 138 28 chr5 41576409 41576626 -161508906 + MIR SINE MIR 1 241 -21 283 253 95 11 chr5 41576798 41576893 -161508639 - MIR SINE MIR -149 113 11 244 212 0 71 chr5 41578170 41578269 -161507263 + CT-rich Low_complexity Low_complexity 4 95 0 2319 94 0 0 chr5 41578408 41578705 -161506827 + AluSx SINE Alu 9 305 -7 2104 84 6 81 chr5 41580476 41580811 -161504721 - AluSx SINE Alu -2 310 1 2135 120 3 3 chr5 41581395 41581703 -161503829 - AluSq SINE Alu -5 308 1 800 221 32 42 chr5 41581753 41581970 -161503562 + MER112 DNA MER1_type 1 215 -45 548 217 36 14 chr5 41582555 41582693 -161502839 - L2 LINE L2 -6 3307 3167 715 266 137 13 chr5 41582852 41583085 -161502447 - MIR SINE MIR 0 262 1 558 259 36 7 chr5 41584779 41584918 -161500614 + MIR SINE MIR 49 191 -71 230 180 0 20 chr5 41587919 41587969 -161497563 + (CA)n Simple_repeat Simple_repeat 2 50 0 190 103 0 0 chr5 41588949 41588978 -161496554 - MIR3 SINE MIR -32 176 148 560 235 82 47 chr5 41589496 41589666 -161495866 - LTR33 LTR ERVL -345 176 1 302 308 48 0 chr5 41590563 41590667 -161494865 - MIR3 SINE MIR -33 175 67 363 286 134 49 chr5 41591842 41592066 -161493466 - MIR SINE MIR -7 255 13 189 301 48 24 chr5 41593623 41593706 -161491826 - MIR SINE MIR -73 189 105 501 235 20 0 chr5 41593773 41593875 -161491657 - HAL1 LINE L1 -2399 108 5 249 33 0 0 chr5 41593910 41593940 -161491592 + (TG)n Simple_repeat Simple_repeat 2 31 0 261 97 97 0 chr5 41594077 41594139 -161491393 - L1ME4a LINE L1 -31 6090 6023 777 285 78 22 chr5 41594737 41595095 -161490437 - L2 LINE L2 -5 3308 2931 607 213 51 15 chr5 41596141 41596338 -161489194 - MER113 DNA MER1_type? -286 235 32 2213 110 7 0 chr5 41597906 41598205 -161487327 + AluSx SINE Alu 1 301 -11 311 227 192 61 chr5 41599288 41599517 -161486015 - L1MC4 LINE L1 -176 7866 7608 251 179 30 60 chr5 41599798 41599865 -161485667 - MLT1J LTR MaLR -28 483 419 469 231 128 0 chr5 41600018 41600135 -161485397 - MLT1J LTR MaLR -312 199 68 238 281 94 23 chr5 41600525 41600653 -161484879 + MIR SINE MIR 121 257 -5 1927 163 3 0 chr5 41600697 41600992 -161484540 + AluSx SINE Alu 1 296 -16 275 347 68 0 chr5 41602088 41602235 -161483297 + MIR SINE MIR 82 238 -24 1238 171 29 154 chr5 41602289 41602539 -161482993 - Charlie1b DNA MER1_type -2271 490 332 2358 98 3 0 chr5 41602539 41602846 -161482686 - AluSq SINE Alu -5 308 1 1238 171 29 154 chr5 41602846 41603078 -161482454 - Charlie1b DNA MER1_type -2429 332 73 493 229 16 0 chr5 41604097 41604219 -161481313 + MIR3 SINE MIR 82 205 -3 1763 95 117 26 chr5 41606827 41607100 -161478432 - AluJo SINE Alu -14 298 1 423 147 53 0 chr5 41608258 41608333 -161477199 - MER53 DNA DNA 0 189 111 238 108 27 0 chr5 41608375 41608412 -161477120 - MER53 DNA DNA -151 38 1 202 238 0 0 chr5 41608759 41608801 -161476731 + T-rich Low_complexity Low_complexity 5 46 0 275 264 45 27 chr5 41609890 41610000 -161475532 + MIR SINE MIR 118 229 -33 827 133 28 133 chr5 41610770 41610915 -161474617 + MER5A DNA MER1_type 1 119 -70 854 201 6 6 chr5 41610915 41611079 -161474453 - FAM SINE Alu -11 164 1 827 133 28 133 chr5 41611079 41611144 -161474388 + MER5A DNA MER1_type 119 189 0 419 245 81 2 chr5 41611155 41611318 -161474214 + MIR SINE MIR 19 192 -70 996 184 40 93 chr5 41611551 41611829 -161473703 + MLT1B LTR MaLR 1 263 -127 966 176 0 0 chr5 41612139 41612292 -161473240 + FRAM SINE Alu 1 153 -23 237 65 0 0 chr5 41612325 41612356 -161473176 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 244 292 67 0 chr5 41612373 41612462 -161473070 - MIR SINE MIR -80 182 88 2547 56 0 3 chr5 41612609 41612914 -161472618 - AluY SINE Alu -7 304 1 461 219 256 6 chr5 41612914 41613078 -161472454 - MER112 DNA MER1_type -1 259 55 185 194 0 0 chr5 41613861 41613897 -161471635 - L2 LINE L2 -970 2344 2309 523 290 91 26 chr5 41614004 41614235 -161471297 - MIR SINE MIR 0 262 17 705 293 107 4 chr5 41614270 41614495 -161471037 - MIR SINE MIR 0 262 15 188 286 63 48 chr5 41614819 41614945 -161470587 + L2 LINE L2 2717 2844 -470 229 273 222 15 chr5 41615111 41615309 -161470223 + L2 LINE L2 2985 3223 -49 185 139 23 0 chr5 41615329 41615372 -161470160 + (TA)n Simple_repeat Simple_repeat 1 44 0 278 294 58 0 chr5 41615450 41615564 -161469968 - MER20B DNA MER1_type -17 202 81 21 71 0 0 chr5 41617378 41617420 -161468112 + AT_rich Low_complexity Low_complexity 1 42 0 800 204 0 19 chr5 41617420 41617582 -161467950 - MER3 DNA MER1_type -86 123 12 1685 168 10 16 chr5 41617738 41618041 -161467491 + AluJb SINE Alu 3 303 -9 694 272 43 39 chr5 41618505 41618737 -161466795 + MIR SINE MIR 24 256 -6 189 260 39 39 chr5 41618772 41618849 -161466683 + MIR SINE MIR 27 103 -159 1526 230 91 34 chr5 41619849 41620323 -161465209 - MLT1D LTR MaLR 0 505 5 234 0 0 0 chr5 41621323 41621349 -161464183 + (TAA)n Simple_repeat Simple_repeat 2 27 0 264 293 0 0 chr5 41621547 41621629 -161463903 + MIR SINE MIR 168 249 -13 1390 187 138 59 chr5 41623600 41624007 -161461525 + MLT1D LTR MaLR 4 442 -63 699 230 29 6 chr5 41624086 41624260 -161461272 - MER5B DNA MER1_type 0 178 1 419 311 55 0 chr5 41624499 41624663 -161460869 - LTR67 LTR ERVL -3 554 382 962 287 25 102 chr5 41625454 41625976 -161459556 - ERVL LTR ERVL -331 5433 4952 656 181 0 39 chr5 41625976 41626103 -161459429 + L1MC4 LINE L1 7390 7511 -531 624 290 77 39 chr5 41626103 41626441 -161459091 - ERVL LTR ERVL -1639 4125 3775 1364 269 53 10 chr5 41626727 41627140 -161458392 - ERVL LTR ERVL -2304 3350 2920 1196 88 132 28 chr5 41627142 41627324 -161458208 - AluSc SINE Alu -10 299 99 1472 324 89 9 chr5 41627328 41628005 -161457527 - ERVL LTR ERVL -2808 2956 2226 727 316 78 4 chr5 41628144 41628400 -161457132 - ERVL LTR ERVL -3715 2049 1775 672 324 68 18 chr5 41628548 41629238 -161456294 - ERVL LTR ERVL -4204 1560 815 355 372 45 24 chr5 41629278 41629568 -161455964 - ERVL LTR ERVL -5061 703 408 302 306 81 25 chr5 41629937 41630097 -161455435 - LTR67 LTR ERVL -6 551 383 2296 118 0 3 chr5 41631465 41631778 -161453754 - AluSx SINE Alu 0 312 1 189 214 0 0 chr5 41632642 41632684 -161452848 + (CA)n Simple_repeat Simple_repeat 1 42 0 2595 59 0 3 chr5 41632830 41633135 -161452397 - AluY SINE Alu -7 304 1 242 239 15 15 chr5 41633136 41633203 -161452329 + MIR SINE MIR 116 182 -80 417 281 26 0 chr5 41633759 41633873 -161451659 - MER5A DNA MER1_type 0 189 73 356 302 62 8 chr5 41633874 41634003 -161451529 - MER91C DNA MER1_type -1 139 4 2234 127 0 3 chr5 41634088 41634395 -161451137 + AluSx SINE Alu 1 306 -6 672 304 40 37 chr5 41635349 41635671 -161449861 + LTR16C LTR ERVL 156 478 -13 246 296 107 15 chr5 41635905 41636101 -161449431 - MIR SINE MIR -13 249 36 187 327 0 0 chr5 41636422 41636477 -161449055 + L2 LINE L2 3251 3305 -8 308 333 9 0 chr5 41637144 41637249 -161448283 + MER5A DNA MER1_type 1 106 -83 862 178 22 6 chr5 41639814 41639994 -161445538 + MIR SINE MIR 18 200 -62 1740 142 14 18 chr5 41640768 41641050 -161444482 + AluJo SINE Alu 32 312 0 195 280 168 16 chr5 41642117 41642242 -161443290 + L2 LINE L2 2550 2693 -621 397 137 0 27 chr5 41642587 41642660 -161442872 - LTR16C LTR ERVL 0 491 421 280 261 0 0 chr5 41642647 41642712 -161442820 + LTR16A1 LTR ERVL 372 436 -21 * 273 306 66 41 chr5 41643522 41643643 -161441889 - MIR SINE MIR -84 124 1 198 71 0 0 chr5 41643810 41643838 -161441694 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 962 234 133 71 chr5 41643838 41644290 -161441242 - L2 LINE L2 -13 3300 2821 2433 53 0 17 chr5 41644879 41645178 -161440354 + AluY SINE Alu 1 294 -17 285 283 127 24 chr5 41645565 41645731 -161439801 + MIR SINE MIR 6 188 -74 435 266 130 11 chr5 41646803 41646980 -161438552 + MIR SINE MIR 21 218 -44 289 200 126 21 chr5 41647047 41647142 -161438390 - MIR SINE MIR -93 169 65 207 0 0 0 chr5 41647318 41647341 -161438191 + (A)n Simple_repeat Simple_repeat 1 23 0 186 133 0 0 chr5 41647397 41647427 -161438105 + (TTA)n Simple_repeat Simple_repeat 3 32 0 186 241 86 17 chr5 41647887 41647945 -161437587 + L2 LINE L2 3173 3234 -38 294 234 109 80 chr5 41648479 41648654 -161436878 - MIR SINE MIR 0 262 83 649 253 50 25 chr5 41648666 41648868 -161436664 - MIR SINE MIR 0 262 56 477 204 191 7 chr5 41648878 41649025 -161436507 - MIR SINE MIR 0 262 89 205 351 0 0 chr5 41649114 41649171 -161436361 - MIR SINE MIR -186 76 20 353 293 180 15 chr5 41649474 41649692 -161435840 - MIR SINE MIR 0 262 17 21 0 0 0 chr5 41649821 41649842 -161435690 + AT_rich Low_complexity Low_complexity 1 21 0 2155 115 7 7 chr5 41649970 41650265 -161435267 - AluSx SINE Alu -17 295 1 329 0 24 0 chr5 41650345 41650386 -161435146 + (CA)n Simple_repeat Simple_repeat 2 43 0 1880 160 0 7 chr5 41650755 41651049 -161434483 + AluJo SINE Alu 1 292 -20 22 0 0 0 chr5 41654218 41654240 -161431292 + AT_rich Low_complexity Low_complexity 1 22 0 858 273 12 24 chr5 41654275 41654524 -161431008 - MIR SINE MIR -12 250 5 338 311 8 17 chr5 41655227 41655346 -161430186 + MIR SINE MIR 3 120 -142 1721 150 0 69 chr5 41655400 41655739 -161429793 - AluJb SINE Alu 0 318 1 428 183 42 78 chr5 41655845 41655987 -161429545 + L2 LINE L2 2919 3055 -217 449 289 14 35 chr5 41656207 41656349 -161429183 + L2 LINE L2 3134 3272 0 394 219 148 16 chr5 41656354 41656482 -161429050 + MIR SINE MIR 106 250 -12 203 220 17 34 chr5 41656937 41656996 -161428536 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 191 270 9 130 chr5 41656997 41657112 -161428420 - L2 LINE L2 -97 3175 3075 266 298 29 10 chr5 41657161 41657265 -161428267 - L3b LINE CR1 -217 1366 1261 2093 140 89 6 chr5 41658065 41658423 -161427109 - MLT1B LTR MaLR 0 390 3 239 367 0 8 chr5 41658546 41658674 -161426858 + L2 LINE L2 2211 2337 -977 923 240 9 14 chr5 41659515 41659744 -161425788 - MIR SINE MIR 0 262 37 1907 190 49 57 chr5 41659854 41660360 -161425172 + MLT1D LTR MaLR 1 502 -3 446 286 8 8 chr5 41661292 41661425 -161424107 + MIR SINE MIR 2 134 -128 211 231 0 19 chr5 41661757 41661809 -161423723 - MIR SINE MIR -161 101 51 346 202 210 8 chr5 41662966 41663090 -161422442 + MER5A DNA MER1_type 41 189 0 200 241 17 0 chr5 41663501 41663559 -161421973 + (TA)n Simple_repeat Simple_repeat 2 60 0 270 250 0 52 chr5 41664184 41664280 -161421252 + L2 LINE L2 3213 3303 -10 7577 30 14 0 chr5 41664625 41665581 -161419951 + L1PA4 LINE L1 5185 6152 -3 24 0 0 0 chr5 41665581 41665605 -161419927 + AT_rich Low_complexity Low_complexity 1 24 0 489 250 136 59 chr5 41665658 41665894 -161419638 - MIR SINE MIR -1 261 8 753 239 160 52 chr5 41666106 41666412 -161419120 + LTR16C LTR ERVL 153 491 0 1769 175 7 10 chr5 41667468 41667765 -161417767 + AluJb SINE Alu 1 296 -16 2157 106 7 13 chr5 41667767 41668070 -161417462 + AluSg SINE Alu 1 301 -9 2235 113 7 0 chr5 41668738 41669038 -161416494 - AluSx SINE Alu -9 303 2 373 273 75 117 chr5 41669178 41669513 -161416019 + LTR67 LTR ERVL 3 318 -239 2916 79 72 10 chr5 41669513 41669886 -161415646 + MLT2A1 LTR ERVL 3 406 -38 549 0 0 0 chr5 41669886 41669947 -161415585 + (TA)n Simple_repeat Simple_repeat 2 62 0 2916 79 72 10 chr5 41669947 41669989 -161415543 + MLT2A1 LTR ERVL 406 444 0 373 273 75 117 chr5 41669989 41670082 -161415450 + LTR67 LTR ERVL 318 413 -144 21 0 0 0 chr5 41670405 41670426 -161415106 + AT_rich Low_complexity Low_complexity 1 21 0 272 246 69 54 chr5 41670830 41670960 -161414572 - MIR SINE MIR -15 247 116 197 33 33 0 chr5 41671147 41671177 -161414355 + (CA)n Simple_repeat Simple_repeat 1 31 0 187 244 0 0 chr5 41673097 41673138 -161412394 - MIR SINE MIR -124 138 98 273 259 42 167 chr5 41673951 41674214 -161411318 + L2 LINE L2 3016 3245 -27 204 340 49 64 chr5 41674228 41674431 -161411101 - L2 LINE L2 -1950 1364 1165 2291 205 93 76 chr5 41674842 41675477 -161410055 + MLT1E1 LTR MaLR 1 646 -8 2141 148 25 15 chr5 41675956 41676354 -161409178 + L1MA6 LINE L1 5890 6291 -9 641 177 122 83 chr5 41676427 41676608 -161408924 + MER20 DNA MER1_type 27 214 -5 16552 109 22 10 chr5 41676790 41679177 -161406355 - Tigger1 DNA MER2_type 0 2418 2 942 227 34 51 chr5 41679458 41679551 -161405981 - LTR16A1 LTR ERVL 0 457 364 2684 161 31 2 chr5 41679551 41680003 -161405529 - MLT1C LTR MaLR -2 465 1 942 227 34 51 chr5 41680003 41680204 -161405328 - LTR16A1 LTR ERVL -93 364 168 529 133 92 0 chr5 41680294 41680392 -161405140 - MER5A DNA MER1_type -52 137 31 225 100 0 0 chr5 41680392 41680422 -161405110 - Charlie1 DNA MER1_type -2731 30 1 329 164 86 103 chr5 41680426 41680542 -161404990 - LTR16A1 LTR ERVL -332 125 12 302 254 100 15 chr5 41680577 41680707 -161404825 - L2 LINE L2 -2874 440 300 884 145 0 0 chr5 41681639 41681763 -161403769 + FLAM_C SINE Alu 1 124 -19 381 22 0 0 chr5 41682368 41682414 -161403118 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 1510 154 0 98 chr5 41682443 41682761 -161402771 - AluJb SINE Alu -25 287 1 236 183 32 75 chr5 41682896 41682989 -161402543 - L1ME4a LINE L1 -49 6072 5984 528 212 71 0 chr5 41683028 41683141 -161402391 + MIR SINE MIR 3 123 -139 2002 201 68 27 chr5 41683675 41684158 -161401374 - MLT1D LTR MaLR 0 505 3 1174 248 164 24 chr5 41685643 41686111 -161399421 - MLT1H1 LTR MaLR -7 548 15 393 306 64 0 chr5 41686160 41686317 -161399215 + MLT1L LTR MaLR 447 613 -2 216 0 0 0 chr5 41686711 41686735 -161398797 + (A)n Simple_repeat Simple_repeat 1 24 0 180 213 21 21 chr5 41686817 41686864 -161398668 - MER5C DNA MER1_type -263 61 15 195 310 0 0 chr5 41686918 41686976 -161398556 - L3b LINE CR1 -131 1452 1395 619 228 79 50 chr5 41687334 41687575 -161397957 - MLT1J LTR MaLR -35 476 229 2458 123 15 33 chr5 41687731 41688037 -161397495 - MLT1B LTR MaLR 0 390 91 2337 128 31 17 chr5 41688037 41688395 -161397137 - THE1B LTR MaLR -1 363 1 2458 123 15 33 chr5 41688395 41688485 -161397047 - MLT1B LTR MaLR -299 91 1 239 267 27 13 chr5 41688490 41688565 -161396967 - MLT1L LTR MaLR -537 78 3 776 290 48 0 chr5 41690027 41690279 -161395253 + HERVL LTR ERVL 2833 3096 -2558 304 282 0 45 chr5 41690375 41690485 -161395047 + HERVL LTR ERVL 3269 3373 -2391 1708 232 37 35 chr5 41690504 41690540 -161394992 - MLT1D LTR MaLR -14 491 457 1802 219 45 16 chr5 41690540 41691028 -161394504 + MLT1D LTR MaLR 1 502 -3 1708 232 37 35 chr5 41691028 41691479 -161394053 - MLT1D LTR MaLR -48 457 3 2057 147 0 13 chr5 41691518 41691831 -161393701 - AluSx SINE Alu -3 309 1 1307 278 78 27 chr5 41691833 41692397 -161393135 + HERVL LTR ERVL 3384 3976 -1788 568 241 28 0 chr5 41692402 41692543 -161392989 + MLT1G1 LTR MaLR 1 145 -450 1230 108 69 68 chr5 41692578 41692990 -161392542 + MER51A LTR ERV1 1 634 0 1176 237 128 6 chr5 41692991 41693350 -161392182 + MLT1G1 LTR MaLR 180 582 -13 1050 300 109 2 chr5 41693362 41693822 -161391710 + HERVL LTR ERVL 3981 4489 -1275 2126 110 0 20 chr5 41693953 41694252 -161391280 + AluSq SINE Alu 1 293 -20 2511 249 42 14 chr5 41694369 41695084 -161390448 + L1MEc LINE L1 49 783 -5613 189 0 0 0 chr5 41695166 41695187 -161390345 + (T)n Simple_repeat Simple_repeat 1 21 0 2776 206 2 58 chr5 41695582 41696183 -161389349 - MLT1F1 LTR MaLR 0 567 1 269 213 66 0 chr5 41698247 41698308 -161387224 - L2 LINE L2 -4 3309 3245 23 0 0 0 chr5 41698438 41698461 -161387071 + AT_rich Low_complexity Low_complexity 1 23 0 305 277 43 0 chr5 41699126 41699220 -161386312 - MIR SINE MIR -29 233 136 350 102 0 0 chr5 41699227 41699299 -161386233 - Alu SINE Alu 0 306 235 321 219 158 0 chr5 41699568 41699682 -161385850 + Charlie4a DNA MER1_type 138 269 -239 4366 175 149 65 chr5 41699682 41701248 -161384284 + pTR5 LTR ERV1 742 2438 0 1014 183 20 48 chr5 41701248 41701271 -161384261 + Charlie4a DNA MER1_type 264 286 -1675 2527 104 31 8 chr5 41701271 41701657 -161383875 + MER48 LTR ERV1 1 395 -3 1014 183 20 48 chr5 41701657 41701885 -161383647 + Charlie4a DNA MER1_type 286 508 0 234 286 39 0 chr5 41701992 41702069 -161383463 + MLT1J LTR MaLR 274 353 -158 1810 139 114 18 chr5 41702286 41702618 -161382914 - THE1B LTR MaLR 0 364 1 184 349 89 77 chr5 41703195 41703430 -161382102 + L2 LINE L2 2940 3177 -95 687 279 37 40 chr5 41704242 41704514 -161381018 - LTR16C LTR ERVL 0 491 221 2021 162 0 0 chr5 41704557 41704853 -161380679 + AluJb SINE Alu 1 296 -16 233 176 20 0 chr5 41706240 41706291 -161379241 - MLT2F LTR ERVL 0 663 612 228 135 0 0 chr5 41706298 41706335 -161379197 + (TG)n Simple_repeat Simple_repeat 1 37 0 771 165 61 30 chr5 41706537 41706701 -161378831 - MLT1E3 LTR MaLR -393 231 63 463 281 14 7 chr5 41706714 41706860 -161378672 - MLT2F LTR ERVL -516 147 1 2453 153 22 7 chr5 41707251 41707707 -161377825 - L1MB3 LINE L1 -2 6181 5719 1091 131 24 34 chr5 41707709 41707915 -161377617 - L1MB3 LINE L1 -528 5643 5440 313 203 76 114 chr5 41708270 41708428 -161377104 - MLT1H LTR MaLR -243 306 155 28 29 0 0 chr5 41710437 41710472 -161375060 + AT_rich Low_complexity Low_complexity 1 35 0 1697 161 6 46 chr5 41710764 41711087 -161374445 + AluJo SINE Alu 1 310 -2 198 0 0 0 chr5 41712263 41712285 -161373247 + (TG)n Simple_repeat Simple_repeat 2 23 0 1795 108 4 0 chr5 41712477 41712736 -161372796 - L1PB1 LINE L1 -13 6138 5879 1632 164 36 11 chr5 41712913 41713187 -161372345 + AluJo SINE Alu 12 292 -20 596 276 103 13 chr5 41713453 41713811 -161371721 - LTR33A LTR ERVL 0 523 135 1349 209 100 31 chr5 41713828 41714018 -161371514 - MLT1A2 LTR MaLR 0 374 198 198 0 0 0 chr5 41714018 41714040 -161371492 + (GA)n Simple_repeat Simple_repeat 1 22 0 1349 209 100 31 chr5 41714040 41714199 -161371333 - MLT1A2 LTR MaLR -176 198 1 401 286 100 14 chr5 41714296 41714436 -161371096 - MIR SINE MIR -79 183 32 2262 110 0 0 chr5 41714653 41714952 -161370580 + AluSx SINE Alu 2 300 -12 397 325 162 4 chr5 41715604 41715838 -161369694 + L2 LINE L2 758 1028 -2286 25 0 0 0 chr5 41716047 41716072 -161369460 + AT_rich Low_complexity Low_complexity 1 25 0 485 147 20 29 chr5 41716213 41716315 -161369217 - MLT1I LTR MaLR 0 409 309 323 352 0 9 chr5 41716605 41716710 -161368822 - L1ME LINE L1 -379 5791 5688 251 333 36 0 chr5 41716712 41716823 -161368709 - MIR SINE MIR 0 262 148 274 346 122 10 chr5 41717145 41717440 -161368092 + LTR16C LTR ERVL 156 483 -8 718 290 103 38 chr5 41717454 41717684 -161367848 + LTR16A LTR ERVL 16 284 -166 2454 145 52 5 chr5 41717684 41718091 -161367441 + MSTB LTR MaLR 1 426 0 718 290 103 38 chr5 41718091 41718256 -161367276 + LTR16A LTR ERVL 284 437 -13 299 321 80 11 chr5 41718665 41718852 -161366680 + ERVL LTR ERVL 4462 4661 -1103 1395 151 35 8 chr5 41718856 41719115 -161366417 + L1MB4 LINE L1 5915 6180 0 22 0 0 0 chr5 41719209 41719231 -161366301 + AT_rich Low_complexity Low_complexity 1 22 0 1964 148 0 23 chr5 41719253 41719558 -161365974 - AluSg SINE Alu -12 298 1 436 172 20 0 chr5 41721496 41721595 -161363937 - L1MA10 LINE L1 -9 6325 6225 4413 190 89 124 chr5 41721596 41721689 -161363843 - L1ME LINE L1 -595 5571 5476 1689 182 90 27 chr5 41721689 41722090 -161363442 + MSTC LTR MaLR 3 428 0 4413 190 89 124 chr5 41722090 41722112 -161363420 - L1ME LINE L1 -690 5476 5455 2545 72 3 0 chr5 41722112 41722419 -161363113 + AluSp SINE Alu 1 308 -5 4413 190 89 124 chr5 41722419 41723278 -161362254 - L1ME LINE L1 -711 5455 4567 1319 180 16 25 chr5 41723278 41723523 -161362009 - AluJb SINE Alu -69 243 1 4413 190 89 124 chr5 41723523 41724830 -161360702 - L1ME LINE L1 -1599 4567 3152 764 241 79 0 chr5 41724827 41725055 -161360477 - L1ME LINE L1 -3493 2653 2408 * 21 0 0 0 chr5 41725072 41725093 -161360439 + AT_rich Low_complexity Low_complexity 1 21 0 219 269 356 0 chr5 41725115 41725219 -161360313 + MIR3 SINE MIR 34 174 -34 28 61 0 0 chr5 41725439 41725488 -161360044 + AT_rich Low_complexity Low_complexity 1 49 0 265 197 14 0 chr5 41725616 41725687 -161359845 - L1M4 LINE L1 -3257 2889 2818 472 248 26 9 chr5 41725689 41725802 -161359730 - MIR SINE MIR -146 116 2 2016 173 9 3 chr5 41726093 41726435 -161359097 + MER2 DNA MER2_type 1 344 0 2289 95 3 13 chr5 41726507 41726823 -161358709 - AluSp SINE Alu 0 313 1 463 321 166 33 chr5 41727004 41727365 -161358167 - MLT1K LTR MaLR -18 570 162 1506 157 196 35 chr5 41727729 41727925 -161357607 + MLT1C LTR MaLR 1 164 -303 1979 131 70 12 chr5 41727925 41728254 -161357278 - MER7A DNA MER2_type 0 346 1 1506 157 196 35 chr5 41728254 41728459 -161357073 + MLT1C LTR MaLR 164 467 0 14168 32 10 1 chr5 41728597 41731085 -161354447 + L1PA4 LINE L1 3634 6155 0 246 250 0 33 chr5 41731438 41731498 -161354034 + L2 LINE L2 3146 3203 -69 216 319 72 14 chr5 41731675 41731744 -161353788 + L2 LINE L2 3151 3223 -49 325 298 67 94 chr5 41732686 41733028 -161352504 + HAL1 LINE L1 971 1303 -1204 1782 226 93 15 chr5 41733099 41733573 -161351959 + MLT1G1 LTR MaLR 85 595 0 332 283 10 0 chr5 41733883 41733982 -161351550 + L1ME3A LINE L1 5501 5600 -2395 566 303 124 3 chr5 41733986 41734276 -161351256 + L1ME3A LINE L1 5561 5885 -285 33 66 0 0 chr5 41734415 41734476 -161351056 + AT_rich Low_complexity Low_complexity 1 61 0 2075 123 48 31 chr5 41734552 41734910 -161350622 - THE1B LTR MaLR 0 364 1 22 35 0 0 chr5 41736429 41736458 -161349074 + AT_rich Low_complexity Low_complexity 1 29 0 259 228 198 0 chr5 41736707 41736808 -161348724 + MIR SINE MIR 118 238 -24 22 0 0 0 chr5 41737284 41737306 -161348226 + AT_rich Low_complexity Low_complexity 1 22 0 1206 244 85 48 chr5 41737344 41737772 -161347760 + L1MC4 LINE L1 7443 7899 -143 2380 105 0 3 chr5 41737772 41738085 -161347447 + AluSx SINE Alu 1 312 0 1206 244 85 48 chr5 41738085 41738222 -161347310 + L1MC4 LINE L1 7899 8029 -13 24 0 0 0 chr5 41738541 41738565 -161346967 + AT_rich Low_complexity Low_complexity 1 24 0 328 310 44 51 chr5 41738597 41738755 -161346777 + MIR SINE MIR 106 262 0 1005 177 68 0 chr5 41739100 41739292 -161346240 - MSTD LTR MaLR -12 384 180 6073 145 26 23 chr5 41739303 41741422 -161344110 - L1PB2 LINE L1 -3 6148 4027 230 103 10 124 chr5 41741674 41741771 -161343761 + L1MA2 LINE L1 6218 6303 -1 1807 256 75 17 chr5 41741771 41742290 -161343242 + MLT1H1 LTR MaLR 7 555 0 442 255 64 64 chr5 41742794 41742928 -161342604 + MIR SINE MIR 50 186 -76 2129 102 10 0 chr5 41742928 41743221 -161342311 + AluSq SINE Alu 1 296 -17 442 255 64 64 chr5 41743221 41743243 -161342289 + MIR SINE MIR 185 206 -56 200 219 0 24 chr5 41743340 41743381 -161342151 - L2 LINE L2 -18 3254 3215 287 85 21 0 chr5 41743967 41744014 -161341518 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 383 263 10 25 chr5 41744015 41744422 -161341110 + GA-rich Low_complexity Low_complexity 1 401 0 9290 196 13 20 chr5 41744526 41746621 -161338911 - L1 LINE L1 -1538 4608 2527 605 254 3 0 chr5 41746631 41746776 -161338756 - MSTC LTR MaLR -217 148 1 197 283 33 0 chr5 41746776 41746836 -161338696 - L2 LINE L2 -1689 1625 1564 1709 279 11 15 chr5 41746902 41747376 -161338156 - L2 LINE L2 -1956 1358 887 1670 169 36 0 chr5 41747380 41747659 -161337873 + AluJb SINE Alu 13 301 -11 375 161 0 32 chr5 41747663 41747756 -161337776 + GA-rich Low_complexity Low_complexity 1 90 0 2016 253 76 83 chr5 41748226 41748461 -161337071 - L2 LINE L2 -2462 852 617 1677 140 32 3 chr5 41748461 41748769 -161336763 + L1MA9 LINE L1 5992 6308 -4 2016 253 76 83 chr5 41748769 41749391 -161336141 - L2 LINE L2 -2697 617 1 266 200 0 17 chr5 41749699 41749759 -161335773 - L1M4 LINE L1 -1514 4632 4574 185 231 0 0 chr5 41749773 41749812 -161335720 + L2 LINE L2 3275 3313 0 1728 144 65 44 chr5 41750718 41751085 -161334447 + THE1C LTR MaLR 1 375 0 1850 147 14 0 chr5 41751291 41751603 -161333929 - AluSx SINE Alu 0 316 1 2220 131 0 0 chr5 41751745 41752057 -161333475 + AluSx SINE Alu 1 312 0 23 0 0 0 chr5 41752057 41752080 -161333452 + AT_rich Low_complexity Low_complexity 1 23 0 2351 79 0 0 chr5 41752430 41752721 -161332811 + AluSg SINE Alu 1 291 -19 201 196 0 0 chr5 41752758 41752804 -161332728 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 463 274 99 61 chr5 41754230 41754493 -161331039 + MLT1L LTR MaLR 1 273 -342 227 296 17 17 chr5 41754627 41754742 -161330790 + MLT1L LTR MaLR 497 611 -4 766 107 23 38 chr5 41754830 41754961 -161330571 + AluJo SINE Alu 5 133 -169 1995 98 16 70 chr5 41754972 41755288 -161330244 + AluSx SINE Alu 1 299 -13 445 309 13 26 chr5 41755586 41755738 -161329794 + MER5A DNA MER1_type 1 150 -39 740 277 92 15 chr5 41756802 41757073 -161328459 - MER102b DNA MER1_type -45 296 5 22 35 0 0 chr5 41757156 41757185 -161328347 + AT_rich Low_complexity Low_complexity 1 29 0 1508 164 19 7 chr5 41757779 41758097 -161327435 + MER33 DNA MER1_type 1 315 -9 248 319 237 16 chr5 41758679 41758996 -161326536 + L2 LINE L2 2805 3191 -122 208 319 0 0 chr5 41759045 41759092 -161326440 - MER91 DNA MER1_type 0 140 94 242 188 21 0 chr5 41759134 41759182 -161326350 + L2 LINE L2 3264 3312 -1 333 242 140 34 chr5 41760310 41760488 -161325044 - MIR SINE MIR -14 248 52 300 386 0 8 chr5 41760846 41760973 -161324559 + MIR SINE MIR 4 129 -133 6465 128 38 32 chr5 41760973 41761529 -161324003 - L1M1 LINE L1 -591 5712 5161 2095 152 113 0 chr5 41761529 41761911 -161323621 - MSTA LTR MaLR -3 425 1 6465 128 38 32 chr5 41761911 41762202 -161323330 - L1M1 LINE L1 -1142 5161 4873 906 210 0 0 chr5 41762202 41762364 -161323168 + AluJo SINE Alu 138 299 -3 6465 128 38 32 chr5 41762364 41763071 -161322461 - L1M1 LINE L1 -1430 4873 4157 22 56 0 0 chr5 41763877 41763913 -161321619 + AT_rich Low_complexity Low_complexity 1 36 0 2257 101 7 3 chr5 41764213 41764519 -161321013 - AluSq SINE Alu -3 310 4 872 184 0 7 chr5 41764816 41764968 -161320564 + FAM SINE Alu 1 151 -34 263 106 0 0 chr5 41765121 41765168 -161320364 + AluSp/q SINE Alu 255 301 -2 903 269 106 36 chr5 41765564 41765950 -161319582 + L2 LINE L2 2473 2885 -429 271 235 54 84 chr5 41766167 41766333 -161319199 + L2 LINE L2 3076 3236 -77 790 260 194 25 chr5 41766366 41766732 -161318800 + L2 LINE L2 2886 3313 0 189 256 0 0 chr5 41767997 41768036 -161317496 - L2 LINE L2 -604 2710 2672 22 35 0 0 chr5 41768257 41768286 -161317246 + AT_rich Low_complexity Low_complexity 1 29 0 41 0 0 19 chr5 41768382 41768415 -161317117 + AT_rich Low_complexity Low_complexity 1 34 -17 1773 155 7 7 chr5 41768415 41768699 -161316833 - AluJb SINE Alu -28 284 1 41 0 0 19 chr5 41768699 41768717 -161316815 + AT_rich Low_complexity Low_complexity 34 51 0 318 329 13 24 chr5 41768765 41768933 -161316599 + L1ME LINE L1 5550 5722 -399 420 293 63 37 chr5 41769444 41769700 -161315832 + L1ME4a LINE L1 5175 5422 -747 29945 71 8 10 chr5 41769786 41774749 -161310783 + L1PA6 LINE L1 1205 6152 -2 866 253 123 39 chr5 41774911 41775317 -161310215 + L1ME4a LINE L1 5511 5978 -143 180 111 0 0 chr5 41775317 41775344 -161310188 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 866 253 123 39 chr5 41775344 41775498 -161310034 + L1ME4a LINE L1 5978 6118 -3 1367 102 44 27 chr5 41776116 41776341 -161309191 + MER30 DNA MER1_type 1 229 -1 2083 101 16 10 chr5 41776750 41777058 -161308474 - AluSx SINE Alu -2 310 1 2151 82 0 7 chr5 41777624 41777904 -161307628 - AluSx SINE Alu -18 294 17 220 378 92 18 chr5 41778069 41778233 -161307299 - MIR3 SINE MIR -31 177 2 24 0 0 0 chr5 41778274 41778298 -161307234 + AT_rich Low_complexity Low_complexity 1 24 0 1290 151 0 32 chr5 41778763 41778982 -161306550 + AluJo SINE Alu 93 304 -8 448 258 15 8 chr5 41779100 41779232 -161306300 - MIR SINE MIR 0 262 130 1487 175 42 21 chr5 41779245 41779530 -161306002 - AluJo SINE Alu -18 294 4 220 299 45 0 chr5 41779534 41779601 -161305931 - MIR SINE MIR -106 156 87 312 70 0 0 chr5 41780126 41780169 -161305363 + (TG)n Simple_repeat Simple_repeat 1 43 0 317 250 24 0 chr5 41780592 41780676 -161304856 - L1ME4a LINE L1 -1 6120 6035 414 258 10 0 chr5 41781401 41781498 -161304034 + MER103 DNA DNA 32 129 -37 267 222 111 0 chr5 41781834 41781897 -161303635 - L2 LINE L2 -2 3270 3201 25 0 0 0 chr5 41781929 41781954 -161303578 + AT_rich Low_complexity Low_complexity 1 25 0 493 289 165 19 chr5 41782397 41782760 -161302772 - L1M4 LINE L1 -2185 3961 3546 253 219 171 29 chr5 41782846 41782951 -161302581 - L1ME4a LINE L1 -35 6086 5967 295 261 103 82 chr5 41783291 41783486 -161302046 - L2 LINE L2 0 3313 3115 741 295 62 93 chr5 41783496 41784012 -161301520 - L2 LINE L2 -386 2928 2429 1739 177 20 0 chr5 41784214 41784508 -161301024 + AluJo SINE Alu 1 300 -12 1642 97 62 0 chr5 41784691 41784918 -161300614 - AluSx SINE Alu -69 243 3 4400 163 45 37 chr5 41785750 41787032 -161298500 - L1MB8 LINE L1 0 6178 4903 1635 159 20 33 chr5 41787200 41787502 -161298030 - AluJo SINE Alu -14 298 1 1413 135 24 0 chr5 41788377 41788585 -161296947 - AluSx SINE Alu -95 217 5 2366 64 0 0 chr5 41789555 41789866 -161295666 - AluY SINE Alu 0 311 1 511 161 89 16 chr5 41790229 41790353 -161295179 + FLAM_C SINE Alu 1 133 0 2702 95 5 18 chr5 41790540 41790929 -161294603 - LTR8 LTR ERV1 -105 586 203 24 0 0 0 chr5 41791505 41791529 -161294003 + AT_rich Low_complexity Low_complexity 1 24 0 677 237 81 21 chr5 41793038 41793274 -161292258 + MER112 DNA MER1_type 11 260 0 2409 71 3 0 chr5 41793692 41794000 -161291532 + AluY SINE Alu 1 309 -2 22 35 0 0 chr5 41795266 41795295 -161290237 + AT_rich Low_complexity Low_complexity 1 29 0 213 204 23 0 chr5 41796016 41796060 -161289472 + L2 LINE L2 3264 3308 -5 323 244 233 35 chr5 41796427 41796714 -161288818 - L2 LINE L2 -3 3310 2967 241 258 45 11 chr5 41796767 41796856 -161288676 - L2 LINE L2 -509 2805 2714 186 103 0 0 chr5 41797986 41798015 -161287517 + (CGG)n Simple_repeat Simple_repeat 2 30 0 180 111 0 0 chr5 41798318 41798345 -161287187 + (GGA)n Simple_repeat Simple_repeat 1 27 0 201 39 0 0 chr5 41798529 41798555 -161286977 + (CGG)n Simple_repeat Simple_repeat 1 26 0 496 262 81 0 chr5 41802770 41802942 -161282590 - MIR SINE MIR -6 256 71 480 350 38 0 chr5 41803335 41803601 -161281931 - MARNA DNA Mariner -22 564 289 348 197 0 0 chr5 41803752 41803813 -161281719 - MIR SINE MIR -130 132 72 397 366 47 5 chr5 41803877 41804068 -161281464 - MIR SINE MIR -62 200 2 32 0 0 0 chr5 41804680 41804712 -161280820 + AT_rich Low_complexity Low_complexity 1 32 0 30 45 0 0 chr5 41805220 41805264 -161280268 + AT_rich Low_complexity Low_complexity 1 44 0 228 404 33 20 chr5 41805884 41806035 -161279497 + L2 LINE L2 3109 3261 -11 490 197 72 33 chr5 41807945 41807965 -161277567 - L1MA10 LINE L1 0 6334 6315 1548 160 86 6 chr5 41807965 41808278 -161277254 - L1ME1 LINE L1 -7 6159 5822 511 292 123 77 chr5 41808862 41809424 -161276108 + L2 LINE L2 1984 2571 -743 314 140 0 0 chr5 41810373 41810423 -161275109 + L2 LINE L2 3264 3313 0 21 0 0 0 chr5 41811085 41811106 -161274426 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr5 41811334 41811362 -161274170 + AT_rich Low_complexity Low_complexity 1 28 0 565 209 80 86 chr5 41811417 41811719 -161273813 - L1ME4a LINE L1 -246 5875 5576 2361 91 3 0 chr5 41812331 41812640 -161272892 + AluY SINE Alu 1 310 -1 197 333 67 0 chr5 41812973 41813078 -161272454 - L2 LINE L2 -479 2835 2724 6424 32 4 3 chr5 41813529 41814299 -161271233 + L1PA5 LINE L1 5383 6153 -1 21 0 0 0 chr5 41814623 41814644 -161270888 + AT_rich Low_complexity Low_complexity 1 21 0 194 193 18 0 chr5 41815798 41815855 -161269677 + (TA)n Simple_repeat Simple_repeat 2 59 0 4677 188 48 14 chr5 41816360 41817948 -161267584 - L1MB7 LINE L1 -38 6146 4613 1776 151 10 10 chr5 41817948 41818247 -161267285 - AluSx SINE Alu -13 299 1 4677 188 48 14 chr5 41818247 41818357 -161267175 - L1MB7 LINE L1 -1571 4613 4508 2172 116 0 3 chr5 41818357 41818649 -161266883 - AluSg SINE Alu -19 291 1 4677 188 48 14 chr5 41818649 41818768 -161266764 - L1MB7 LINE L1 -1676 4508 4265 208 250 0 19 chr5 41819232 41819284 -161266248 + GA-rich Low_complexity Low_complexity 4 54 0 317 258 41 41 chr5 41819762 41819859 -161265673 - MIR SINE MIR -131 131 35 2241 101 10 0 chr5 41819859 41820155 -161265377 - AluSp SINE Alu -13 300 2 371 252 98 35 chr5 41821403 41821477 -161264055 - MIR SINE MIR -21 241 173 976 227 147 3 chr5 41821477 41821777 -161263755 - MER2 DNA MER2_type -1 343 1 371 252 98 35 chr5 41821777 41821845 -161263687 - MIR SINE MIR -89 173 90 272 319 53 11 chr5 41821920 41822014 -161263518 + L2 LINE L2 3151 3248 -24 221 0 35 0 chr5 41822014 41822043 -161263489 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 334 353 17 92 chr5 41822131 41822289 -161263243 + L2 LINE L2 2936 3054 -218 6462 181 18 24 chr5 41822289 41822846 -161262686 - L1PA15 LINE L1 -2 6163 5604 2303 107 3 0 chr5 41822846 41823154 -161262378 - AluSp SINE Alu -4 309 1 6462 181 18 24 chr5 41823154 41824776 -161260756 - L1PA15 LINE L1 -561 5604 3990 334 353 17 92 chr5 41824776 41824977 -161260555 + L2 LINE L2 3053 3268 -4 2081 107 3 7 chr5 41825534 41825824 -161259708 + AluSg SINE Alu 1 289 -21 1570 231 95 54 chr5 41825829 41826344 -161259188 - MLT1F1 LTR MaLR -6 561 1 252 0 0 0 chr5 41826429 41826457 -161259075 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 2473 65 3 7 chr5 41827083 41827389 -161258143 - AluY SINE Alu -6 305 1 368 239 15 4 chr5 41828474 41828560 -161256972 - MER5A DNA MER1_type -81 106 12 25 0 0 0 chr5 41828784 41828809 -161256723 + AT_rich Low_complexity Low_complexity 1 25 0 364 246 82 41 chr5 41830773 41830944 -161254588 + L1ME LINE L1 5551 5728 -393 2186 115 0 0 chr5 41831140 41831435 -161254097 + AluSc SINE Alu 1 295 -14 263 302 44 137 chr5 41832725 41833040 -161252492 + L2 LINE L2 2977 3262 -10 510 361 108 24 chr5 41833217 41833802 -161251730 - L2 LINE L2 -466 2848 2215 2185 88 14 3 chr5 41833850 41834146 -161251386 - AluSx SINE Alu -11 301 3 933 193 181 40 chr5 41834261 41834665 -161250867 + L1MC4 LINE L1 7480 7940 -102 1476 173 61 17 chr5 41834726 41835021 -161250511 - AluJo SINE Alu -4 308 1 289 280 29 115 chr5 41835270 41835549 -161249983 - MLT1I LTR MaLR -50 359 105 2016 127 87 0 chr5 41835725 41836057 -161249475 + MER46B DNA MER2_type 1 236 0 27 43 5 0 chr5 41836293 41836378 -161249154 + AT_rich Low_complexity Low_complexity 1 48 0 23 33 0 0 chr5 41836615 41836645 -161248887 + AT_rich Low_complexity Low_complexity 1 30 0 13887 42 8 41 chr5 41837852 41840530 -161245002 - L1PA5 LINE L1 -5 6149 3528 666 218 0 0 chr5 41840756 41840880 -161244652 - FLAM_A SINE Alu -5 128 5 318 216 21 21 chr5 41841670 41841767 -161243765 - MER113 DNA MER1_type? -393 128 32 2259 99 0 3 chr5 41843270 41843574 -161241958 - AluSx SINE Alu -9 303 1 1944 106 0 62 chr5 41844393 41844713 -161240819 + AluSc SINE Alu 1 300 -9 30 59 0 0 chr5 41845607 41845658 -161239874 + AT_rich Low_complexity Low_complexity 1 51 0 444 267 37 14 chr5 41845779 41845900 -161239632 + MIR SINE MIR 8 128 -80 274 242 132 22 chr5 41845923 41846014 -161239518 + L2 LINE L2 3211 3311 -2 194 352 22 22 chr5 41846009 41846100 -161239432 + MIR SINE MIR 151 241 -21 * 200 219 0 24 chr5 41846499 41846540 -161238992 + L2 LINE L2 3215 3254 -18 471 259 57 63 chr5 41846637 41846659 -161238873 - MIR SINE MIR -56 206 185 2094 105 10 0 chr5 41846659 41846953 -161238579 - AluSq SINE Alu -16 297 1 471 259 57 63 chr5 41846953 41847088 -161238444 - MIR SINE MIR -77 185 50 1909 251 69 28 chr5 41847595 41848106 -161237426 - MLT1H1 LTR MaLR 0 555 20 522 125 0 0 chr5 41848106 41848194 -161237338 - L1MA3 LINE L1 0 6305 6218 1909 251 69 28 chr5 41848194 41848215 -161237317 - MLT1H1 LTR MaLR -535 20 1 1648 220 222 10 chr5 41848727 41849245 -161236287 - L2 LINE L2 -513 2801 2174 675 126 45 0 chr5 41849260 41849371 -161236161 - AluSq/x SINE Alu -196 116 1 539 239 172 18 chr5 41849429 41849592 -161235940 + MIR3 SINE MIR 14 201 -7 2818 228 93 13 chr5 41849944 41850703 -161234829 - L1ME1 LINE L1 -6 6160 5341 * 8767 232 92 29 chr5 41850701 41852703 -161232829 - L1MDa LINE L1 -743 5472 3203 1791 181 3 0 chr5 41852703 41853006 -161232526 - AluJb SINE Alu -8 304 1 8767 232 92 29 chr5 41853006 41854125 -161231407 - L1MDa LINE L1 -3012 3203 2156 880 184 12 6 chr5 41854166 41854329 -161231203 - FAM SINE Alu -2 47 1 294 211 13 13 chr5 41854393 41854469 -161231063 - L1MDa LINE L1 -4301 2095 2020 25 0 0 0 chr5 41855000 41855025 -161230507 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr5 41855640 41855664 -161229868 + AT_rich Low_complexity Low_complexity 1 24 0 1052 228 216 15 chr5 41856360 41856684 -161228848 + L2 LINE L2 974 1362 -1952 495 282 121 29 chr5 41856731 41856937 -161228595 + L2 LINE L2 1818 2042 -1272 1185 222 80 44 chr5 41857025 41857413 -161228119 - MLT1C LTR MaLR 0 467 66 447 244 113 48 chr5 41857484 41857651 -161227881 - L1MC4a LINE L1 -1485 6323 6136 1813 141 60 15 chr5 41857651 41857984 -161227548 + MER7A DNA MER2_type 1 346 0 447 244 113 48 chr5 41857984 41858046 -161227486 - L1MC4a LINE L1 -1672 6136 6079 351 241 35 17 chr5 41858161 41858277 -161227255 + MIR SINE MIR 118 235 -27 227 329 110 14 chr5 41859296 41859369 -161226163 - MER5A DNA MER1_type -19 170 91 321 224 56 9 chr5 41859796 41859903 -161225629 + L1MC4 LINE L1 7929 8040 -2 2230 228 71 34 chr5 41860062 41860398 -161225134 - L1MD2 LINE L1 -1 6358 6036 1657 194 17 0 chr5 41860398 41860687 -161224845 - AluJb SINE Alu -18 294 1 2230 228 71 34 chr5 41860687 41860970 -161224562 - L1MD2 LINE L1 -323 6036 5707 2066 154 62 31 chr5 41860970 41861354 -161224178 - MSTD LTR MaLR 0 396 1 2230 228 71 34 chr5 41861354 41861440 -161224092 - L1MD2 LINE L1 -652 5707 5626 619 211 83 19 chr5 41862100 41862256 -161223276 + MIR SINE MIR 90 255 -7 296 273 121 10 chr5 41862330 41862429 -161223103 + L2 LINE L2 3141 3250 -22 23 0 0 0 chr5 41863153 41863176 -161222356 + AT_rich Low_complexity Low_complexity 1 23 0 2158 119 3 0 chr5 41863540 41863850 -161221682 + AluSx SINE Alu 1 311 -1 1944 130 20 3 chr5 41863850 41864143 -161221389 + AluSx SINE Alu 1 298 -14 284 358 58 0 chr5 41864245 41864365 -161221167 + L3 LINE CR1 845 971 -606 448 211 13 0 chr5 41864472 41864548 -161220984 + MER2 DNA MER2_type 269 345 0 1157 257 64 18 chr5 41864549 41864989 -161220543 + L1M4 LINE L1 4252 4711 -1435 1513 241 151 50 chr5 41864994 41865688 -161219844 - L2 LINE L2 -1001 2313 1550 23 0 0 0 chr5 41865947 41865970 -161219562 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr5 41866559 41866580 -161218952 + AT_rich Low_complexity Low_complexity 1 21 0 397 237 9 130 chr5 41867728 41867943 -161217589 + LTR41 LTR ERVL 552 740 -33 253 235 0 15 chr5 41867952 41868020 -161217512 + L1MC4 LINE L1 6648 6714 -1328 235 311 94 9 chr5 41868135 41868241 -161217291 + MIR SINE MIR 1 115 -147 300 364 38 3 chr5 41868343 41868468 -161217064 + MIR SINE MIR 40 177 -31 310 318 58 29 chr5 41868554 41868727 -161216805 + L2 LINE L2 2175 2352 -962 279 247 62 62 chr5 41869556 41869653 -161215879 + L2 LINE L2 3169 3265 -7 701 234 102 15 chr5 41870443 41870640 -161214892 - MIR SINE MIR -12 250 37 463 200 158 61 chr5 41870773 41870938 -161214594 + MIR SINE MIR 38 218 -44 466 269 102 23 chr5 41870948 41871164 -161214368 - L1ME LINE L1 -385 5736 5504 278 302 16 32 chr5 41871724 41871850 -161213682 - MIR SINE MIR -14 248 125 372 164 0 0 chr5 41873413 41873480 -161212052 + (TG)n Simple_repeat Simple_repeat 2 68 0 664 291 145 0 chr5 41874673 41874900 -161210632 + MIR SINE MIR 2 261 -1 2208 63 7 40 chr5 41877336 41877636 -161207896 + AluSc SINE Alu 3 292 -17 23 0 0 0 chr5 41877761 41877784 -161207748 + AT_rich Low_complexity Low_complexity 1 23 0 2363 106 0 0 chr5 41878014 41878325 -161207207 - AluSx SINE Alu -1 311 1 2347 94 0 0 chr5 41879101 41879400 -161206132 + AluSq SINE Alu 1 299 -14 24 0 0 0 chr5 41880104 41880128 -161205404 + AT_rich Low_complexity Low_complexity 1 24 0 1924 149 3 3 chr5 41880323 41880631 -161204901 + AluJb SINE Alu 1 308 -4 887 127 7 14 chr5 41881349 41881491 -161204041 + FLAM_C SINE Alu 1 141 -2 246 323 115 31 chr5 41881923 41882019 -161203513 - L3 LINE CR1 -34 1543 1440 23 0 0 0 chr5 41882269 41882292 -161203240 + AT_rich Low_complexity Low_complexity 1 23 0 374 332 71 58 chr5 41882315 41882610 -161202922 + L3 LINE CR1 1263 1561 -16 24 0 0 0 chr5 41882639 41882663 -161202869 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr5 41883735 41883758 -161201774 + AT_rich Low_complexity Low_complexity 1 23 0 1766 163 42 9 chr5 41884031 41884363 -161201169 - MER2 DNA MER2_type 0 344 2 1588 189 50 0 chr5 41884918 41885198 -161200334 + AluJb SINE Alu 1 294 -18 5217 181 53 9 chr5 41885572 41887211 -161198321 + L1MA4 LINE L1 4554 6296 -4 353 292 102 31 chr5 41887515 41888107 -161197425 - L1MC5 LINE L1 -350 7611 7146 24 91 0 0 chr5 41888357 41888423 -161197109 + AT_rich Low_complexity Low_complexity 1 66 0 319 250 69 94 chr5 41888513 41888673 -161196859 + L1MC/D LINE L1 5317 5472 -2336 350 260 39 55 chr5 41888838 41889019 -161196513 + L1MC/D LINE L1 3545 3722 -2424 435 221 0 0 chr5 41889092 41889178 -161196354 - FLAM_A SINE Alu -10 132 47 1815 156 29 16 chr5 41889216 41889524 -161196008 + AluJb SINE Alu 1 312 0 1685 95 68 4 chr5 41889718 41889970 -161195562 + AluY SINE Alu 33 300 -11 700 227 0 0 chr5 41889978 41890106 -161195426 + FLAM_A SINE Alu 1 128 -5 1167 286 100 20 chr5 41890128 41891049 -161194483 + L1MC/D LINE L1 4034 5045 -1101 694 277 156 12 chr5 41891080 41891495 -161194037 + L1MC/D LINE L1 5352 5823 -361 1635 177 33 13 chr5 41891502 41891801 -161193731 + AluJo SINE Alu 3 307 -5 198 0 0 0 chr5 41891809 41891831 -161193701 + (TA)n Simple_repeat Simple_repeat 1 22 0 635 161 131 8 chr5 41892633 41892763 -161192769 + MER58C DNA MER1_type 70 215 0 21 36 0 0 chr5 41894726 41894754 -161190778 + AT_rich Low_complexity Low_complexity 1 28 0 2020 69 0 42 chr5 41894754 41894867 -161190665 - L1PA8 LINE L1 -4 6168 6052 2387 76 0 10 chr5 41894867 41895171 -161190361 - AluSg SINE Alu -9 301 1 2020 69 0 42 chr5 41895171 41895346 -161190186 - L1PA8 LINE L1 -120 6052 5892 405 285 145 35 chr5 41895829 41896029 -161189503 + MIR SINE MIR 9 230 -32 206 294 156 28 chr5 41896963 41897072 -161188460 + MIR3 SINE MIR 45 167 -41 5624 173 23 6 chr5 41899003 41901015 -161184517 - L1PA16 LINE L1 -1 6165 4126 2059 171 3 3 chr5 41901831 41902175 -161183357 + MER7A DNA MER2_type 2 343 -3 833 115 0 23 chr5 41908448 41908578 -161176954 - FLAM_C SINE Alu -2 131 5 464 173 333 0 chr5 41908712 41908868 -161176664 - MER3 DNA MER1_type -1 208 1 186 240 0 0 chr5 41909728 41909778 -161175754 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 214 358 15 0 chr5 41910389 41910456 -161175076 + L2 LINE L2 3200 3267 -5 2005 121 0 4 chr5 41910986 41911266 -161174266 + AluSx SINE Alu 29 307 -5 22 35 0 0 chr5 41912386 41912415 -161173117 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr5 41913149 41913184 -161172348 + AT_rich Low_complexity Low_complexity 1 35 0 696 215 8 0 chr5 41913923 41914053 -161171479 - FRAM SINE Alu -17 159 29 2253 71 4 0 chr5 41914114 41914436 -161171096 - AluY SINE Alu 0 323 1 205 205 0 0 chr5 41916813 41916852 -161168680 + (TA)n Simple_repeat Simple_repeat 2 40 0 742 256 82 85 chr5 41917443 41917736 -161167796 - L2 LINE L2 -4 3268 2977 869 107 0 0 chr5 41919933 41920045 -161165487 + FLAM_C SINE Alu 6 117 -26 394 309 94 39 chr5 41920831 41921012 -161164520 - MER117 DNA MER1_type 0 197 7 402 328 30 30 chr5 41922980 41923114 -161162418 - L2 LINE L2 -1 3312 3179 827 283 58 37 chr5 41923394 41923859 -161161673 - LTR33 LTR ERVL 0 521 6 396 244 0 12 chr5 41924803 41924885 -161160647 + Tigger7 DNA MER2_type 2 82 -257 * 908 161 124 5 chr5 41924882 41925075 -161160457 + Tigger7 DNA MER2_type 2272 2487 0 460 165 66 0 chr5 41925471 41925562 -161159970 + MIR SINE MIR 156 252 -10 1355 221 0 34 chr5 41925785 41926107 -161159425 - AluJo SINE Alu -1 311 1 301 145 32 0 chr5 41926130 41926192 -161159340 - L1ME4a LINE L1 -8 6113 6050 1421 106 60 0 chr5 41926372 41926589 -161158943 - MER30 DNA MER1_type 0 230 1 26 0 0 0 chr5 41926633 41926659 -161158873 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr5 41930207 41930230 -161155302 + AT_rich Low_complexity Low_complexity 1 23 0 835 241 68 14 chr5 41930336 41930543 -161154989 - MER20 DNA MER1_type 0 219 2 2267 77 27 0 chr5 41931706 41932003 -161153529 - AluSg SINE Alu -5 305 1 253 347 63 50 chr5 41932054 41932260 -161153272 + MIR SINE MIR 23 232 -30 850 199 13 0 chr5 41932262 41932413 -161153119 + MER46A DNA MER2_type 1 153 -83 25 31 0 0 chr5 41932637 41932669 -161152863 + AT_rich Low_complexity Low_complexity 1 32 0 1559 195 7 3 chr5 41932674 41932956 -161152576 + AluJb SINE Alu 4 286 -26 233 265 0 20 chr5 41933421 41933523 -161152009 - L1M LINE L1 -2380 5428 5329 1246 136 5 0 chr5 41933537 41933728 -161151804 - AluJb SINE Alu -1 311 120 6284 53 10 82 chr5 41933859 41935654 -161149878 - SVA Other Other -683 1386 1 215 294 0 0 chr5 41936271 41936322 -161149210 + MIR3 SINE MIR 107 157 -51 2273 93 0 7 chr5 41936520 41936821 -161148711 - AluSp SINE Alu -14 299 1 2071 120 10 3 chr5 41936850 41937142 -161148390 + AluSg SINE Alu 1 294 -16 22 35 0 0 chr5 41938299 41938328 -161147204 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr5 41938814 41938859 -161146673 + AT_rich Low_complexity Low_complexity 1 45 0 1016 189 6 108 chr5 41939171 41939422 -161146110 - L1MD3 LINE L1 0 8038 7849 547 168 112 148 chr5 41939422 41939618 -161145914 + MER5A DNA MER1_type 1 189 0 1016 189 6 108 chr5 41939618 41939720 -161145812 - L1MD3 LINE L1 -189 7849 7738 1203 224 47 4 chr5 41939742 41939997 -161145535 - L1MC4 LINE L1 -1014 7028 6763 1936 126 60 0 chr5 41940236 41940521 -161145011 + AluSx SINE Alu 1 302 -10 26 30 0 0 chr5 41941150 41941183 -161144349 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr5 41941283 41941304 -161144228 + AT_rich Low_complexity Low_complexity 1 21 0 2352 94 0 0 chr5 41942415 41942713 -161142819 + AluSq SINE Alu 1 298 -15 2010 95 4 0 chr5 41942825 41943089 -161142443 + AluY SINE Alu 27 291 -20 21 57 0 0 chr5 41943388 41943423 -161142109 + AT_rich Low_complexity Low_complexity 1 35 0 203 133 0 0 chr5 41944109 41944139 -161141393 + (TATG)n Simple_repeat Simple_repeat 3 32 0 444 289 132 56 chr5 41944860 41945282 -161140250 - L1MC5 LINE L1 -151 7810 7345 2124 121 3 3 chr5 41945282 41945580 -161139952 + AluSq SINE Alu 1 298 -15 444 289 132 56 chr5 41945580 41945642 -161139890 - L1MC5 LINE L1 -616 7345 7289 212 266 31 0 chr5 41945661 41945725 -161139807 - MIR SINE MIR -22 240 175 1474 190 7 69 chr5 41946350 41946655 -161138877 + AluJo SINE Alu 3 288 -24 22 80 0 0 chr5 41946730 41946780 -161138752 + AT_rich Low_complexity Low_complexity 1 50 0 2223 164 26 7 chr5 41946787 41947215 -161138317 + L1MA4 LINE L1 5864 6299 -1 21 57 0 0 chr5 41947242 41947277 -161138255 + AT_rich Low_complexity Low_complexity 1 35 0 766 200 28 56 chr5 41948148 41948328 -161137204 + FAM SINE Alu 1 175 0 2311 96 0 25 chr5 41949003 41949317 -161136215 - AluSx SINE Alu -6 306 1 797 201 137 97 chr5 41949618 41949732 -161135800 - L1MC5 LINE L1 -99 7862 7754 2251 104 3 13 chr5 41949732 41950040 -161135492 - AluSx SINE Alu -7 305 1 797 201 137 97 chr5 41950040 41950555 -161134977 - L1MC5 LINE L1 -207 7754 7238 * 2225 207 108 16 chr5 41950549 41951162 -161134370 - L1ME1 LINE L1 -58 6108 5440 1101 197 0 24 chr5 41952161 41952374 -161133158 - AluJb SINE Alu -18 294 87 2337 86 0 7 chr5 41952385 41952686 -161132846 - AluSq SINE Alu -14 299 1 1247 239 20 7 chr5 41953099 41953404 -161132128 + L1ME2 LINE L1 5745 6053 -111 377 260 75 34 chr5 41953404 41953550 -161131982 - MER5A DNA MER1_type -1 188 37 * 753 233 0 13 chr5 41953420 41953570 -161131962 + MER5A DNA MER1_type 37 184 -5 419 216 9 17 chr5 41953570 41953686 -161131846 + L1ME2 LINE L1 6040 6154 -10 500 135 0 11 chr5 41953755 41953844 -161131688 + (TG)n Simple_repeat Simple_repeat 2 89 0 1389 233 0 17 chr5 41953882 41954170 -161131362 + AluJo SINE Alu 1 283 -29 21 0 0 0 chr5 41954625 41954646 -161130886 + AT_rich Low_complexity Low_complexity 1 21 0 518 231 148 73 chr5 41954646 41955045 -161130487 + L1ME3A LINE L1 4632 5060 -1086 263 176 0 29 chr5 41955059 41955127 -161130405 - L1MC4 LINE L1 -1339 6703 6638 849 149 8 15 chr5 41955134 41955268 -161130264 - FLAM_A SINE Alu 0 133 1 666 272 106 56 chr5 41955331 41956072 -161129460 + L1ME3A LINE L1 5171 5950 -220 1553 161 79 0 chr5 41956409 41956676 -161128856 + AluJb SINE Alu 1 288 -24 650 223 14 47 chr5 41956892 41957103 -161128429 - MER3 DNA MER1_type -1 208 5 22 0 0 0 chr5 41957397 41957419 -161128113 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr5 41957570 41957615 -161127917 + AT_rich Low_complexity Low_complexity 1 45 0 318 50 0 0 chr5 41957737 41957777 -161127755 + (TA)n Simple_repeat Simple_repeat 1 40 0 25 83 0 0 chr5 41958276 41958336 -161127196 + AT_rich Low_complexity Low_complexity 1 60 0 23 86 0 0 chr5 41958367 41958425 -161127107 + AT_rich Low_complexity Low_complexity 1 58 0 2287 79 0 7 chr5 41958505 41958795 -161126737 + AluY SINE Alu 1 288 -23 375 98 0 0 chr5 41958795 41958856 -161126676 + (TA)n Simple_repeat Simple_repeat 1 61 0 238 286 0 0 chr5 41959026 41959096 -161126436 + T-rich Low_complexity Low_complexity 1 70 0 1825 180 3 3 chr5 41959383 41959688 -161125844 - AluJo SINE Alu -7 305 1 27 0 0 0 chr5 41960477 41960504 -161125028 + AT_rich Low_complexity Low_complexity 1 27 0 50 31 0 0 chr5 41960681 41960745 -161124787 + AT_rich Low_complexity Low_complexity 1 64 0 407 233 133 8 chr5 41960877 41960997 -161124535 - MIR SINE MIR -30 232 98 703 279 116 0 chr5 41961321 41961536 -161123996 - MIR SINE MIR 0 262 23 350 220 85 75 chr5 41961941 41962141 -161123391 - L1ME LINE L1 -303 5818 5617 287 241 63 49 chr5 41962236 41962467 -161123065 - L1ME LINE L1 -753 5489 5255 2282 103 0 10 chr5 41962655 41962967 -161122565 - AluSg SINE Alu -1 309 1 1856 158 3 7 chr5 41962969 41963266 -161122266 - AluSx SINE Alu -16 296 1 618 35 35 0 chr5 41963556 41963643 -161121889 + AluSg SINE Alu 1 90 -220 1008 108 13 6 chr5 41963747 41963904 -161121628 + THE1C-int LTR MaLR 1423 1580 0 2134 116 42 53 chr5 41963904 41964057 -161121475 + THE1C LTR MaLR 1 154 -221 2151 120 7 0 chr5 41964057 41964356 -161121176 - AluSc SINE Alu -8 301 1 2134 116 42 53 chr5 41964356 41964581 -161120951 + THE1C LTR MaLR 154 375 0 8739 204 88 25 chr5 41964581 41964816 -161120716 + L1 LINE L1 2775 2994 -3161 2313 94 10 0 chr5 41964816 41965114 -161120418 + AluSp SINE Alu 1 301 -12 8739 204 88 25 chr5 41965114 41966371 -161119161 + L1 LINE L1 2994 4170 -1985 306 50 0 0 chr5 41966371 41966411 -161119121 + (CA)n Simple_repeat Simple_repeat 2 41 0 8739 204 88 25 chr5 41966411 41967262 -161118270 + L1 LINE L1 4170 5295 -860 2553 45 0 10 chr5 41967262 41967573 -161117959 + AluY SINE Alu 1 308 -3 8739 204 88 25 chr5 41967573 41967664 -161117868 + L1 LINE L1 5295 5379 -776 804 174 8 0 chr5 41967955 41968076 -161117456 + FLAM_C SINE Alu 3 124 -19 2200 96 0 7 chr5 41968081 41968374 -161117158 + AluSg SINE Alu 1 291 -19 21 36 0 0 chr5 41968374 41968402 -161117130 + AT_rich Low_complexity Low_complexity 1 28 0 6126 86 26 8 chr5 41969523 41970501 -161115031 - L1PB1 LINE L1 -7 6144 5150 1685 151 13 7 chr5 41970604 41970902 -161114630 + AluSx SINE Alu 1 300 -12 186 279 82 33 chr5 41971489 41971550 -161113982 - MIR SINE MIR -152 110 47 2166 115 10 3 chr5 41971573 41971878 -161113654 - AluSc SINE Alu -2 307 1 1576 165 0 84 chr5 41971990 41972191 -161113341 + AluJb SINE Alu 1 167 -145 2107 145 0 3 chr5 41972191 41972501 -161113031 + AluSx SINE Alu 3 311 -1 1576 165 0 84 chr5 41972501 41972621 -161112911 + AluJb SINE Alu 167 295 -17 1642 144 26 46 chr5 41974102 41974408 -161111124 + AluJo SINE Alu 1 300 -12 666 220 43 0 chr5 41974519 41974660 -161110872 + MIR SINE MIR 29 175 -87 2327 86 0 13 chr5 41974703 41975007 -161110525 - AluSc SINE Alu -9 300 1 2261 95 3 16 chr5 41975384 41975690 -161109842 + AluSp SINE Alu 1 302 -11 2445 69 0 7 chr5 41975699 41976003 -161109529 + AluY SINE Alu 1 302 -9 814 207 12 6 chr5 41976419 41976588 -161108944 + FAM SINE Alu 1 170 -5 1368 65 0 6 chr5 41977877 41978046 -161107486 - AluSq SINE Alu -15 298 131 573 103 4 1 chr5 41978667 41978901 -161106631 + AluSx SINE Alu 41 307 -5 1263 192 92 37 chr5 41979550 41979821 -161105711 - AluJo SINE Alu -16 286 1 315 141 0 0 chr5 41979922 41979986 -161105546 + (CA)n Simple_repeat Simple_repeat 2 65 0 1506 175 4 18 chr5 41980520 41980800 -161104732 - AluJo SINE Alu -1 311 36 698 87 10 0 chr5 41981762 41981865 -161103667 - L1MA2 LINE L1 0 6304 6201 1054 290 53 35 chr5 41981916 41981937 -161103595 + LTR16B LTR ERVL 23 42 -422 1695 169 17 14 chr5 41981937 41982233 -161103299 + AluJb SINE Alu 1 297 -15 1054 290 53 35 chr5 41982233 41982645 -161102887 + LTR16B LTR ERVL 42 464 0 570 222 86 0 chr5 41982697 41982814 -161102718 + FLAM_A SINE Alu 1 127 -6 1806 205 116 0 chr5 41982911 41983272 -161102260 + MER68 LTR ERV1 160 562 0 321 248 81 60 chr5 41983272 41983417 -161102115 + LTR16B LTR ERVL 317 464 0 2378 90 10 6 chr5 41983485 41983797 -161101735 - AluSq SINE Alu 0 313 1 216 0 0 0 chr5 41983810 41983834 -161101698 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1188 182 5 5 chr5 41983841 41984044 -161101488 + AluJb SINE Alu 103 305 -7 22 56 0 0 chr5 41984094 41984130 -161101402 + AT_rich Low_complexity Low_complexity 1 36 0 317 120 0 0 chr5 41984147 41984197 -161101335 - AluJo SINE Alu -161 141 92 739 199 150 34 chr5 41984440 41984560 -161100972 + L1P LINE L1 4467 4572 -1574 1899 129 44 7 chr5 41984560 41984855 -161100677 + AluSq SINE Alu 5 310 -3 739 199 150 34 chr5 41984855 41985001 -161100531 + L1P LINE L1 4572 4764 -1382 9729 105 47 4 chr5 41985103 41986501 -161099031 - THE1C-int LTR MaLR -123 1457 1 2501 114 8 16 chr5 41986501 41986879 -161098653 - THE1C LTR MaLR 0 375 1 1795 243 19 4 chr5 41986902 41987363 -161098169 - L1 LINE L1 -3380 2766 2299 23 33 0 0 chr5 41988348 41988378 -161097154 + AT_rich Low_complexity Low_complexity 1 30 0 1682 179 11 0 chr5 41988540 41988825 -161096707 - AluJo SINE Alu -24 288 1 1005 97 21 0 chr5 41989792 41989937 -161095595 - MER30 DNA MER1_type -74 156 9 2218 107 0 0 chr5 41990425 41990715 -161094817 + AluSg SINE Alu 1 290 -20 1523 139 35 116 chr5 41990780 41991125 -161094407 + AluYb8 SINE Alu 1 317 -1 288 77 0 0 chr5 41991157 41991196 -161094336 + (CA)n Simple_repeat Simple_repeat 2 40 0 1569 193 14 7 chr5 41991386 41991520 -161094012 + AluJo SINE Alu 1 133 -179 2233 102 0 7 chr5 41991520 41991824 -161093708 + AluSg1 SINE Alu 1 302 -7 1569 193 14 7 chr5 41991824 41991969 -161093563 + AluJo SINE Alu 133 282 -30 1131 150 55 59 chr5 41992039 41992259 -161093273 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr5 41992809 41992830 -161092702 + AT_rich Low_complexity Low_complexity 1 21 0 2237 92 7 7 chr5 41993341 41993633 -161091899 + AluSx SINE Alu 1 292 -20 306 289 0 13 chr5 41993997 41994073 -161091459 + MER5C DNA MER1_type 1 75 -249 382 286 49 2 chr5 41994592 41994725 -161090807 + MIR SINE MIR 17 154 -63 2010 135 55 0 chr5 41995182 41995508 -161090024 - MER2 DNA MER2_type 0 344 1 209 213 0 21 chr5 41995991 41996038 -161089494 + MIR SINE MIR 81 126 -136 30 0 0 0 chr5 41996250 41996280 -161089252 + AT_rich Low_complexity Low_complexity 1 30 0 826 225 14 38 chr5 41996317 41996526 -161089006 - MIR SINE MIR -56 206 3 38 51 0 0 chr5 41996688 41996747 -161088785 + AT_rich Low_complexity Low_complexity 1 59 0 285 51 0 0 chr5 41997212 41997251 -161088281 + (CA)n Simple_repeat Simple_repeat 2 40 0 214 286 0 48 chr5 41997973 41998057 -161087475 + MIR SINE MIR 119 198 -64 2060 117 3 51 chr5 41998454 41998770 -161086762 + AluSx SINE Alu 1 301 -11 1065 252 25 6 chr5 41998775 41999096 -161086436 - L1MC4 LINE L1 -27 8015 7689 1876 162 10 3 chr5 41999097 41999394 -161086138 - AluSx SINE Alu -9 303 5 523 204 142 37 chr5 42000365 42000527 -161085005 + MIR3 SINE MIR 29 207 -1 1641 149 33 33 chr5 42001275 42001360 -161084172 - MER44D DNA MER2_type -1883 608 524 1951 134 84 0 chr5 42001360 42001681 -161083851 - MER7A DNA MER2_type 0 346 1 1641 149 33 33 chr5 42001681 42001931 -161083601 - MER44D DNA MER2_type -1966 525 3 388 283 25 50 chr5 42002028 42002148 -161083384 - L2 LINE L2 0 3272 3156 2506 84 0 0 chr5 42002187 42002497 -161083035 + AluSg SINE Alu 1 310 0 2104 128 3 10 chr5 42003338 42003650 -161081882 + AluSx SINE Alu 1 310 -2 182 280 56 65 chr5 42003683 42003790 -161081742 - L2 LINE L2 -813 2501 2396 1084 185 43 56 chr5 42004006 42004238 -161081294 + AluJo SINE Alu 1 229 -83 186 291 93 0 chr5 42004253 42004339 -161081193 - L2 LINE L2 -1477 1837 1744 310 282 9 9 chr5 42005242 42005352 -161080180 + CT-rich Low_complexity Low_complexity 2 111 0 214 318 0 0 chr5 42006150 42006194 -161079338 + L2 LINE L2 3210 3253 -19 468 271 159 0 chr5 42006357 42006508 -161079024 + MER5A DNA MER1_type 9 183 -6 22 0 0 0 chr5 42006974 42006996 -161078536 + AT_rich Low_complexity Low_complexity 1 22 0 2243 111 0 0 chr5 42007497 42007785 -161077747 + AluSx SINE Alu 1 288 -24 266 210 16 0 chr5 42007855 42007917 -161077615 - L1ME LINE L1 -338 5828 5766 291 234 25 120 chr5 42008369 42008463 -161077069 - Charlie8 DNA MER1_type -2224 193 118 1475 176 62 18 chr5 42008463 42008736 -161076796 - AluJo SINE Alu -27 285 1 291 234 25 120 chr5 42008736 42008799 -161076733 - Charlie8 DNA MER1_type -2299 118 51 305 279 24 67 chr5 42008800 42008965 -161076567 - L2 LINE L2 -546 2768 2611 452 198 10 10 chr5 42009571 42009667 -161075865 + MER2 DNA MER2_type 2 97 -248 1264 159 0 5 chr5 42009668 42009869 -161075663 + AluJb SINE Alu 1 200 -112 852 186 0 7 chr5 42009970 42010115 -161075417 + AluSg/x SINE Alu 146 289 -21 818 194 63 40 chr5 42010122 42010281 -161075251 + MER2 DNA MER2_type 81 250 -95 2312 69 21 3 chr5 42010281 42010572 -161074960 - AluSq SINE Alu -17 296 1 818 194 63 40 chr5 42010572 42010665 -161074867 + MER2 DNA MER2_type 250 339 -6 705 160 76 105 chr5 42010887 42011074 -161074458 + L1MB4 LINE L1 5950 6130 -50 1860 178 0 10 chr5 42011074 42011378 -161074154 + AluJb SINE Alu 1 301 -11 705 160 76 105 chr5 42011378 42011428 -161074104 + L1MB4 LINE L1 6130 6180 0 25 31 0 0 chr5 42011464 42011496 -161074036 + AT_rich Low_complexity Low_complexity 1 32 0 554 217 104 0 chr5 42011507 42011613 -161073919 + AluSq/x SINE Alu 4 120 -192 25 51 0 0 chr5 42011740 42011779 -161073753 + AT_rich Low_complexity Low_complexity 1 39 0 850 232 32 0 chr5 42011915 42012100 -161073432 + MER58A DNA MER1_type 33 223 -1 216 0 0 0 chr5 42014990 42015014 -161070518 + (TTGG)n Simple_repeat Simple_repeat 2 25 0 279 240 115 10 chr5 42015195 42015291 -161070241 - MIR SINE MIR -71 191 86 2458 64 3 0 chr5 42015543 42015841 -161069691 + AluSp SINE Alu 1 299 -14 24 53 0 0 chr5 42017134 42017172 -161068360 + AT_rich Low_complexity Low_complexity 1 38 0 325 274 52 7 chr5 42017180 42017315 -161068217 - L1MC5 LINE L1 -89 7872 7732 2481 66 10 0 chr5 42017323 42017625 -161067907 - AluY SINE Alu -6 305 1 2391 75 0 3 chr5 42017818 42018113 -161067419 + AluSg SINE Alu 1 294 -16 275 340 39 0 chr5 42019056 42019159 -161066373 - MIR SINE MIR -68 140 34 182 315 108 23 chr5 42019991 42020121 -161065411 - L2 LINE L2 -956 2358 2218 194 280 0 20 chr5 42020357 42020407 -161065125 - L2 LINE L2 -2100 1214 1166 195 311 184 10 chr5 42020476 42020682 -161064850 - L2 LINE L2 -2341 973 732 223 209 0 0 chr5 42020777 42020820 -161064712 - L2 LINE L2 0 3313 3271 1693 161 75 11 chr5 42021107 42021387 -161064145 + AluJb SINE Alu 1 298 -14 230 301 217 63 chr5 42021471 42021867 -161063665 - L2 LINE L2 -341 2973 2517 377 214 201 56 chr5 42022229 42022552 -161062980 - HAL1 LINE L1 -59 2448 2079 1040 250 140 14 chr5 42022674 42023118 -161062414 - HAL1 LINE L1 -634 1873 1374 725 186 0 0 chr5 42023134 42023252 -161062280 + FLAM_C SINE Alu 1 118 -25 236 261 121 45 chr5 42023274 42023630 -161061902 - HAL1 LINE L1 -1138 1369 987 2111 104 4 4 chr5 42023662 42023968 -161061564 + AluSc SINE Alu 1 306 0 1922 143 6 37 chr5 42024400 42024722 -161060810 + AluJo SINE Alu 1 312 0 2081 136 48 0 chr5 42024754 42025049 -161060483 - AluSx SINE Alu -2 310 2 322 357 80 28 chr5 42025138 42025351 -161060181 - HAL1 LINE L1 -1511 996 773 643 187 161 7 chr5 42025374 42025529 -161060003 - MER58A DNA MER1_type 0 224 46 348 307 57 80 chr5 42025819 42025995 -161059537 - HAL1 LINE L1 -2299 208 37 2204 140 0 7 chr5 42026045 42026353 -161059179 - AluJb SINE Alu -5 307 2 734 129 32 32 chr5 42026353 42026477 -161059055 - AluJo SINE Alu -177 135 12 5988 89 14 2 chr5 42026487 42027809 -161057723 - L1PA11 LINE L1 -1 6173 4836 22 56 0 0 chr5 42028365 42028401 -161057131 + AT_rich Low_complexity Low_complexity 1 36 0 427 343 42 15 chr5 42028529 42028861 -161056671 + L1MEc LINE L1 207 547 -6016 395 177 204 26 chr5 42029462 42029479 -161056053 + L1MEc LINE L1 799 812 -5472 479 196 137 10 chr5 42029479 42029605 -161055927 + FLAM_C SINE Alu 2 140 0 395 177 204 26 chr5 42029605 42029759 -161055773 + L1MEc LINE L1 812 989 -5295 2184 104 0 27 chr5 42029765 42030063 -161055469 - AluSx SINE Alu -22 290 1 513 250 3 35 chr5 42030078 42030296 -161055236 + L1MEc LINE L1 1275 1448 -4832 804 104 16 6 chr5 42030299 42030549 -161054983 + AluSx SINE Alu 1 294 -15 316 266 53 4 chr5 42030557 42030711 -161054821 + L1MEc LINE L1 1641 1759 -4623 1236 186 55 6 chr5 42030716 42031028 -161054504 + L1 LINE L1 4575 4901 -1245 535 98 0 0 chr5 42031028 42031110 -161054422 - LTR9B LTR ERV1 -562 82 1 698 143 39 77 chr5 42031111 42031293 -161054239 + L1MEc LINE L1 2453 2627 -3755 671 254 11 0 chr5 42031309 42031498 -161054034 + L1PBa LINE L1 7 197 -6666 * 7581 143 35 14 chr5 42031495 42032938 -161052594 + L1PBa LINE L1 1392 2875 -3987 2121 96 32 7 chr5 42032938 42033219 -161052313 + AluSg SINE Alu 1 288 -22 7581 143 35 14 chr5 42033219 42033438 -161052094 + L1PBa LINE L1 2875 3088 -3774 2342 166 11 9 chr5 42034368 42034826 -161050706 + L1MEc LINE L1 2598 3056 -3326 2011 183 81 33 chr5 42034826 42035308 -161050224 + LTR22 LTR ERVK 1 505 -4 3467 132 34 7 chr5 42035313 42035902 -161049630 + HERVK22 LTR ERVK 1 605 -6232 2445 65 0 0 chr5 42035903 42036194 -161049338 - AluY SINE Alu -20 291 1 16773 91 10 0 chr5 42036196 42038562 -161046970 + HERVK22 LTR ERVK 694 3081 -3756 10198 113 16 14 chr5 42038572 42040212 -161045320 + HERVK22 LTR ERVK 3205 4847 -1990 18011 86 8 12 chr5 42040314 42042867 -161042665 + HERVK22 LTR ERVK 4294 6837 0 1882 179 80 66 chr5 42042867 42043365 -161042167 + LTR22 LTR ERVK 1 505 -4 8662 193 16 3 chr5 42043370 42046103 -161039429 + L1P5 LINE L1 3051 5822 -565 251 108 0 0 chr5 42046110 42046159 -161039373 + L1PBa LINE L1 3094 3142 -3720 781 141 0 63 chr5 42046168 42046310 -161039222 + FLAM_C SINE Alu 1 133 0 298 207 0 0 chr5 42046335 42046393 -161039139 + L1 LINE L1 3373 3430 -3432 1629 126 105 26 chr5 42046524 42046866 -161038666 + L1M1 LINE L1 2198 2566 -4283 2922 194 16 70 chr5 42046868 42047158 -161038374 + L1M1 LINE L1 2816 3120 -3728 2345 98 0 0 chr5 42047158 42047464 -161038068 + AluSg1 SINE Alu 1 306 -3 2922 194 16 70 chr5 42047464 42048165 -161037367 + L1M1 LINE L1 3120 3912 -2936 21083 143 32 14 chr5 42048175 42051237 -161034295 - L1PA11 LINE L1 -2 6172 2989 2144 145 0 0 chr5 42051237 42051547 -161033985 - AluSx SINE Alu -2 310 1 21083 143 32 14 chr5 42051547 42053374 -161032158 - L1PA11 LINE L1 -3185 2989 1197 2042 120 0 7 chr5 42053380 42053664 -161031868 + AluSx SINE Alu 6 287 -25 2023 110 0 57 chr5 42053683 42053983 -161031549 + AluSq SINE Alu 1 283 -30 2629 159 23 63 chr5 42053995 42054079 -161031453 + L1M1 LINE L1 5443 5529 -1473 1845 169 10 3 chr5 42054079 42054387 -161031145 + AluJb SINE Alu 1 310 -2 2629 159 23 63 chr5 42054387 42055393 -161030139 + L1M1 LINE L1 5529 6481 -521 1104 96 6 0 chr5 42055393 42055539 -161029993 + L1MA4 LINE L1 6127 6293 -7 977 175 142 12 chr5 42055643 42055883 -161029649 - Charlie1 DNA MER1_type -219 2542 2272 195 69 0 0 chr5 42056875 42056904 -161028628 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 216 86 0 0 chr5 42057261 42057296 -161028236 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 210 37 0 0 chr5 42057564 42057591 -161027941 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 877 258 322 13 chr5 42058495 42058722 -161026810 + L2 LINE L2 2174 2330 -984 2200 112 3 0 chr5 42058722 42059016 -161026516 - AluSx SINE Alu -17 295 1 877 258 322 13 chr5 42059016 42059390 -161026142 + L2 LINE L2 2330 2961 -353 22 35 0 0 chr5 42059515 42059544 -161025988 + AT_rich Low_complexity Low_complexity 1 29 0 233 245 0 0 chr5 42059677 42059726 -161025806 + L2 LINE L2 3261 3309 -4 * 488 208 31 0 chr5 42059725 42059821 -161025711 - MIR SINE MIR -76 186 88 2594 56 0 0 chr5 42059863 42060166 -161025366 - AluY SINE Alu -8 303 1 2457 58 0 19 chr5 42060177 42060485 -161025047 - AluY SINE Alu -9 302 1 2482 103 22 6 chr5 42062202 42062560 -161022972 + THE1B LTR MaLR 1 364 0 230 336 67 0 chr5 42062649 42062768 -161022764 + L1MEd LINE L1 895 1021 -5098 2224 97 0 0 chr5 42062874 42063172 -161022360 - AluSc SINE Alu 0 298 1 380 281 33 8 chr5 42063228 42063349 -161022183 + MIR SINE MIR 139 262 0 208 241 84 60 chr5 42063369 42063452 -161022080 + MIR SINE MIR 92 176 -86 296 301 105 23 chr5 42063464 42063597 -161021935 - MIR SINE MIR -106 156 13 23 0 0 0 chr5 42063648 42063671 -161021861 + AT_rich Low_complexity Low_complexity 1 23 0 1095 138 0 0 chr5 42063679 42063838 -161021694 + AluSq SINE Alu 1 159 -154 442 174 18 55 chr5 42064006 42064115 -161021417 + FLAM_A SINE Alu 11 115 -27 14681 38 19 23 chr5 42064363 42067022 -161018510 + L1PA5 LINE L1 3528 6153 -1 21 0 0 0 chr5 42067346 42067367 -161018165 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr5 42069460 42069494 -161016038 + (CA)n Simple_repeat Simple_repeat 1 34 0 202 227 0 0 chr5 42069687 42069731 -161015801 + (CA)n Simple_repeat Simple_repeat 1 44 0 682 220 16 32 chr5 42121816 42122002 -160963530 - MER3 DNA MER1_type -26 183 1 22 0 0 0 chr5 42122292 42122314 -160963218 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr5 42122465 42122510 -160963022 + AT_rich Low_complexity Low_complexity 1 45 0 336 48 0 0 chr5 42122632 42122674 -160962858 + (TA)n Simple_repeat Simple_repeat 1 42 0 25 83 0 0 chr5 42123173 42123233 -160962299 + AT_rich Low_complexity Low_complexity 1 60 0 23 86 0 0 chr5 42123264 42123322 -160962210 + AT_rich Low_complexity Low_complexity 1 58 0 2251 84 0 3 chr5 42123402 42123689 -160961843 + AluY SINE Alu 1 286 -25 390 108 0 0 chr5 42123689 42123754 -160961778 + (TA)n Simple_repeat Simple_repeat 2 66 0 238 286 0 0 chr5 42123924 42123994 -160961538 + T-rich Low_complexity Low_complexity 1 70 0 1817 177 3 3 chr5 42124281 42124586 -160960946 - AluJo SINE Alu -7 305 1 27 0 0 0 chr5 42125371 42125398 -160960134 + AT_rich Low_complexity Low_complexity 1 27 0 50 31 0 0 chr5 42125575 42125639 -160959893 + AT_rich Low_complexity Low_complexity 1 64 0 415 233 133 8 chr5 42125771 42125891 -160959641 - MIR SINE MIR -30 232 98 711 279 116 0 chr5 42126215 42126430 -160959102 - MIR SINE MIR 0 262 23 369 220 85 75 chr5 42126835 42127035 -160958497 - L1ME LINE L1 -303 5818 5617 292 241 63 49 chr5 42127130 42127361 -160958171 - L1ME LINE L1 -753 5489 5255 2255 103 0 10 chr5 42127549 42127861 -160957671 - AluSg SINE Alu -1 309 1 1870 158 0 7 chr5 42127863 42128161 -160957371 - AluSx SINE Alu -16 296 1 2181 107 0 0 chr5 42128450 42128740 -160956792 + AluSg SINE Alu 1 290 -20 1495 139 35 116 chr5 42128805 42129150 -160956382 + AluYb8 SINE Alu 1 317 -1 270 81 0 0 chr5 42129182 42129219 -160956313 + (CA)n Simple_repeat Simple_repeat 2 38 0 1542 193 14 7 chr5 42129409 42129543 -160955989 + AluJo SINE Alu 1 133 -179 2206 102 0 7 chr5 42129543 42129848 -160955684 + AluSg1 SINE Alu 1 303 -6 1542 193 14 7 chr5 42129848 42129993 -160955539 + AluJo SINE Alu 133 282 -30 1117 150 55 59 chr5 42130063 42130283 -160955249 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr5 42130833 42130854 -160954678 + AT_rich Low_complexity Low_complexity 1 21 0 2191 92 7 7 chr5 42131365 42131657 -160953875 + AluSx SINE Alu 1 292 -20 299 289 0 13 chr5 42132020 42132096 -160953436 + MER5C DNA MER1_type 1 75 -249 381 286 49 2 chr5 42132615 42132748 -160952784 + MIR SINE MIR 17 154 -63 2041 132 55 0 chr5 42133206 42133532 -160952000 - MER2 DNA MER2_type 0 344 1 193 257 29 43 chr5 42133992 42134062 -160951470 + MIR SINE MIR 58 126 -136 30 0 0 0 chr5 42134274 42134304 -160951228 + AT_rich Low_complexity Low_complexity 1 30 0 804 225 14 38 chr5 42134341 42134550 -160950982 - MIR SINE MIR -56 206 3 38 51 0 0 chr5 42134712 42134771 -160950761 + AT_rich Low_complexity Low_complexity 1 59 0 285 51 0 0 chr5 42135236 42135275 -160950257 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 286 0 48 chr5 42135997 42136081 -160949451 + MIR SINE MIR 119 198 -64 2014 117 3 51 chr5 42136478 42136794 -160948738 + AluSx SINE Alu 1 301 -11 1170 252 28 38 chr5 42136799 42137121 -160948411 - L1MC4 LINE L1 -27 8015 7696 1822 162 10 3 chr5 42137121 42137418 -160948114 - AluSx SINE Alu -9 303 5 1170 252 28 38 chr5 42137418 42137488 -160948044 - L1MC4 LINE L1 -346 7696 7627 527 204 142 37 chr5 42138389 42138551 -160946981 + MIR3 SINE MIR 29 207 -1 1764 149 33 33 chr5 42139299 42139384 -160946148 - MER44D DNA MER2_type -1883 608 524 1962 134 84 0 chr5 42139384 42139705 -160945827 - MER7A DNA MER2_type 0 346 1 1764 149 33 33 chr5 42139705 42139955 -160945577 - MER44D DNA MER2_type -1966 525 3 378 300 25 50 chr5 42140052 42140172 -160945360 - L2 LINE L2 0 3272 3156 2481 77 0 0 chr5 42140211 42140521 -160945011 + AluSg SINE Alu 1 310 0 2034 129 3 10 chr5 42141362 42141673 -160943859 + AluSx SINE Alu 1 309 -3 190 280 56 65 chr5 42141706 42141813 -160943719 - L2 LINE L2 -813 2501 2396 1040 185 43 56 chr5 42142029 42142261 -160943271 + AluJo SINE Alu 1 229 -83 186 291 93 0 chr5 42142276 42142362 -160943170 - L2 LINE L2 -1477 1837 1744 310 282 9 9 chr5 42143265 42143375 -160942157 + CT-rich Low_complexity Low_complexity 2 111 0 211 318 0 0 chr5 42144173 42144217 -160941315 + L2 LINE L2 3210 3253 -19 457 271 159 0 chr5 42144380 42144531 -160941001 + MER5A DNA MER1_type 9 183 -6 22 0 0 0 chr5 42144997 42145019 -160940513 + AT_rich Low_complexity Low_complexity 1 22 0 2243 111 0 0 chr5 42145520 42145808 -160939724 + AluSx SINE Alu 1 288 -24 288 210 16 0 chr5 42145878 42145940 -160939592 - L1ME LINE L1 -338 5828 5766 319 234 25 120 chr5 42146392 42146486 -160939046 - Charlie8 DNA MER1_type -137 193 118 1475 176 62 18 chr5 42146486 42146759 -160938773 - AluJo SINE Alu -27 285 1 319 234 25 120 chr5 42146759 42146822 -160938710 - Charlie8 DNA MER1_type -212 118 51 305 279 24 67 chr5 42146823 42146988 -160938544 - L2 LINE L2 -546 2768 2611 1175 182 46 83 chr5 42147594 42147691 -160937841 + MER2 DNA MER2_type 2 101 -244 1742 175 0 7 chr5 42147691 42147982 -160937550 + AluJb SINE Alu 1 289 -23 1175 182 46 83 chr5 42147982 42148141 -160937391 + MER2 DNA MER2_type 101 244 -101 2347 69 21 0 chr5 42148141 42148431 -160937101 - AluSq SINE Alu -17 296 1 1175 182 46 83 chr5 42148431 42148524 -160937008 + MER2 DNA MER2_type 244 339 -6 705 160 76 105 chr5 42148746 42148933 -160936599 + L1MB4 LINE L1 5950 6130 -50 1860 178 0 10 chr5 42148933 42149237 -160936295 + AluJb SINE Alu 1 301 -11 705 160 76 105 chr5 42149237 42149287 -160936245 + L1MB4 LINE L1 6130 6180 0 25 31 0 0 chr5 42149323 42149355 -160936177 + AT_rich Low_complexity Low_complexity 1 32 0 554 217 104 0 chr5 42149366 42149472 -160936060 + AluSq/x SINE Alu 4 120 -193 25 51 0 0 chr5 42149599 42149638 -160935894 + AT_rich Low_complexity Low_complexity 1 39 0 850 232 32 0 chr5 42149774 42149959 -160935573 + MER58A DNA MER1_type 33 223 -1 216 0 0 0 chr5 42152848 42152872 -160932660 + (TTGG)n Simple_repeat Simple_repeat 2 25 0 312 237 103 10 chr5 42153053 42153150 -160932382 - MIR SINE MIR -71 191 86 2458 64 3 0 chr5 42153402 42153700 -160931832 + AluSp SINE Alu 1 299 -14 310 281 52 7 chr5 42155039 42155174 -160930358 - L1MC5 LINE L1 -89 7872 7732 2490 66 10 0 chr5 42155181 42155484 -160930048 - AluY SINE Alu -5 306 1 2383 75 3 0 chr5 42155677 42155970 -160929562 + AluSg SINE Alu 1 294 -16 275 340 39 0 chr5 42156913 42157016 -160928516 - MIR SINE MIR -68 140 34 182 315 108 23 chr5 42157848 42157978 -160927554 - L2 LINE L2 -956 2358 2218 194 280 0 20 chr5 42158214 42158264 -160927268 - L2 LINE L2 -2100 1214 1166 195 311 184 10 chr5 42158333 42158539 -160926993 - L2 LINE L2 -2341 973 732 223 209 0 0 chr5 42158634 42158677 -160926855 - L2 LINE L2 0 3313 3271 1693 161 75 11 chr5 42158964 42159244 -160926288 + AluJb SINE Alu 1 298 -14 230 301 217 63 chr5 42159328 42159724 -160925808 - L2 LINE L2 -341 2973 2517 377 214 201 56 chr5 42160086 42160409 -160925123 - HAL1 LINE L1 -59 2448 2079 1040 250 140 14 chr5 42160531 42160975 -160924557 - HAL1 LINE L1 -634 1873 1374 725 186 0 0 chr5 42160991 42161109 -160924423 + FLAM_C SINE Alu 1 118 -25 236 261 121 45 chr5 42161131 42161487 -160924045 - HAL1 LINE L1 -1138 1369 987 2111 104 4 4 chr5 42161519 42161825 -160923707 + AluSc SINE Alu 1 306 0 1922 143 6 37 chr5 42162257 42162579 -160922953 + AluJo SINE Alu 1 312 0 2081 136 48 0 chr5 42162611 42162906 -160922626 - AluSx SINE Alu -2 310 2 322 357 80 28 chr5 42162995 42163208 -160922324 - HAL1 LINE L1 -1511 996 773 643 187 161 7 chr5 42163231 42163386 -160922146 - MER58A DNA MER1_type 0 224 46 348 307 57 80 chr5 42163676 42163852 -160921680 - HAL1 LINE L1 -2299 208 37 2204 140 0 7 chr5 42163902 42164210 -160921322 - AluJb SINE Alu -5 307 2 734 129 32 32 chr5 42164210 42164334 -160921198 - AluJo SINE Alu -177 135 12 5988 89 14 2 chr5 42164344 42165666 -160919866 - L1PA11 LINE L1 -1 6173 4836 21 57 0 0 chr5 42166222 42166257 -160919275 + AT_rich Low_complexity Low_complexity 1 35 0 427 343 42 15 chr5 42166385 42166717 -160918815 + L1MEc LINE L1 207 547 -6016 395 177 204 26 chr5 42167317 42167334 -160918198 + L1MEc LINE L1 799 812 -5472 479 196 137 10 chr5 42167334 42167460 -160918072 + FLAM_C SINE Alu 2 140 0 395 177 204 26 chr5 42167460 42167614 -160917918 + L1MEc LINE L1 812 989 -5295 2184 104 0 27 chr5 42167620 42167918 -160917614 - AluSx SINE Alu -22 290 1 513 250 3 35 chr5 42167933 42168151 -160917381 + L1MEc LINE L1 1275 1448 -4832 804 104 16 6 chr5 42168154 42168404 -160917128 + AluSx SINE Alu 1 294 -15 316 266 53 4 chr5 42168412 42168566 -160916966 + L1MEc LINE L1 1641 1759 -4623 1236 186 55 6 chr5 42168571 42168883 -160916649 + L1 LINE L1 4575 4901 -1245 535 98 0 0 chr5 42168883 42168965 -160916567 - LTR9B LTR ERV1 -562 82 1 698 143 39 77 chr5 42168966 42169148 -160916384 + L1MEc LINE L1 2453 2627 -3755 671 254 11 0 chr5 42169164 42169353 -160916179 + L1PBa LINE L1 7 197 -6666 * 7581 143 35 14 chr5 42169350 42170793 -160914739 + L1PBa LINE L1 1392 2875 -3987 2121 96 32 7 chr5 42170793 42171074 -160914458 + AluSg SINE Alu 1 288 -22 7581 143 35 14 chr5 42171074 42171293 -160914239 + L1PBa LINE L1 2875 3088 -3774 2342 166 11 9 chr5 42172223 42172681 -160912851 + L1MEc LINE L1 2598 3056 -3326 2011 183 81 33 chr5 42172681 42173163 -160912369 + LTR22 LTR ERVK 1 505 -4 3622 132 29 5 chr5 42173168 42173759 -160911773 + HERVK22 LTR ERVK 1 605 -6232 2445 65 0 0 chr5 42173760 42174051 -160911481 - AluY SINE Alu -20 291 1 16812 91 9 0 chr5 42174053 42176420 -160909112 + HERVK22 LTR ERVK 694 3081 -3756 25120 97 8 8 chr5 42176430 42180061 -160905471 + HERVK22 LTR ERVK 3205 6837 0 1882 179 80 66 chr5 42180061 42180559 -160904973 + LTR22 LTR ERVK 1 505 -4 10307 196 17 2 chr5 42180564 42183297 -160902235 + L1P5 LINE L1 3051 5822 -565 237 132 0 0 chr5 42183304 42183353 -160902179 + L1PBa LINE L1 3094 3142 -3720 781 141 0 63 chr5 42183362 42183504 -160902028 + FLAM_C SINE Alu 1 133 0 298 207 0 0 chr5 42183529 42183587 -160901945 + L1 LINE L1 3373 3430 -3432 2399 146 72 16 chr5 42183627 42184115 -160901417 + L1M1 LINE L1 2052 2566 -4283 2928 194 16 69 chr5 42184117 42184407 -160901125 + L1M1 LINE L1 2816 3120 -3728 2387 92 0 0 chr5 42184407 42184711 -160900821 + AluSg1 SINE Alu 1 304 -5 2928 194 16 69 chr5 42184711 42185411 -160900121 + L1M1 LINE L1 3120 3912 -2936 21131 144 32 12 chr5 42185421 42188473 -160897059 - L1PA11 LINE L1 -2 6172 2985 2144 145 0 0 chr5 42188473 42188783 -160896749 - AluSx SINE Alu -2 310 1 21131 144 32 12 chr5 42188783 42190610 -160894922 - L1PA11 LINE L1 -3189 2985 1197 2042 120 0 7 chr5 42190616 42190900 -160894632 + AluSx SINE Alu 6 287 -25 2023 110 0 57 chr5 42190919 42191219 -160894313 + AluSq SINE Alu 1 283 -30 2629 159 23 63 chr5 42191231 42191315 -160894217 + L1M1 LINE L1 5443 5529 -1473 1845 169 10 3 chr5 42191315 42191623 -160893909 + AluJb SINE Alu 1 310 -2 2629 159 23 63 chr5 42191623 42192629 -160892903 + L1M1 LINE L1 5529 6481 -521 1104 96 6 0 chr5 42192629 42192775 -160892757 + L1MA4 LINE L1 6127 6293 -7 977 175 142 12 chr5 42192879 42193119 -160892413 - Charlie1 DNA MER1_type -219 2542 2272 195 69 0 0 chr5 42194111 42194140 -160891392 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 254 50 25 0 chr5 42194492 42194532 -160891000 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 210 37 0 0 chr5 42194800 42194827 -160890705 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 877 258 322 13 chr5 42195731 42195958 -160889574 + L2 LINE L2 2174 2330 -984 2200 112 3 0 chr5 42195958 42196252 -160889280 - AluSx SINE Alu -17 295 1 877 258 322 13 chr5 42196252 42196626 -160888906 + L2 LINE L2 2330 2961 -353 22 35 0 0 chr5 42196751 42196780 -160888752 + AT_rich Low_complexity Low_complexity 1 29 0 233 245 0 0 chr5 42196913 42196962 -160888570 + L2 LINE L2 3261 3309 -4 * 488 208 31 0 chr5 42196961 42197057 -160888475 - MIR SINE MIR -76 186 88 2594 56 0 0 chr5 42197099 42197402 -160888130 - AluY SINE Alu -8 303 1 2445 62 0 19 chr5 42197413 42197721 -160887811 - AluY SINE Alu -9 302 1 2506 101 22 6 chr5 42199436 42199794 -160885738 + THE1B LTR MaLR 1 364 0 230 336 67 0 chr5 42199883 42200002 -160885530 + L1MEd LINE L1 895 1021 -5098 2224 97 0 0 chr5 42200108 42200406 -160885126 - AluSc SINE Alu 0 298 1 380 281 33 8 chr5 42200462 42200583 -160884949 + MIR SINE MIR 139 262 0 208 241 84 60 chr5 42200603 42200686 -160884846 + MIR SINE MIR 92 176 -86 296 301 105 23 chr5 42200698 42200831 -160884701 - MIR SINE MIR -106 156 13 23 0 0 0 chr5 42200882 42200905 -160884627 + AT_rich Low_complexity Low_complexity 1 23 0 2181 117 3 0 chr5 42200913 42201213 -160884319 + AluSx SINE Alu 1 301 -11 186 279 82 33 chr5 42201800 42201861 -160883671 - MIR SINE MIR -152 110 47 2209 112 10 3 chr5 42201884 42202188 -160883344 - AluSc SINE Alu -3 306 1 1700 167 0 69 chr5 42202300 42202500 -160883032 + AluJb SINE Alu 1 173 -139 2169 138 0 3 chr5 42202500 42202811 -160882721 + AluSx SINE Alu 3 312 0 1700 167 0 69 chr5 42202811 42202927 -160882605 + AluJb SINE Alu 173 295 -17 1659 144 26 46 chr5 42204408 42204713 -160880819 + AluJo SINE Alu 1 299 -13 671 220 43 0 chr5 42204824 42204965 -160880567 + MIR SINE MIR 29 175 -87 2467 74 0 0 chr5 42205008 42205307 -160880225 - AluSc SINE Alu -10 299 1 2289 95 3 16 chr5 42205684 42205990 -160879542 + AluSp SINE Alu 1 302 -11 2452 69 0 7 chr5 42205999 42206303 -160879229 + AluY SINE Alu 1 302 -9 823 207 12 6 chr5 42206719 42206888 -160878644 + FAM SINE Alu 1 170 -5 1371 65 0 6 chr5 42208177 42208346 -160877186 - AluSq SINE Alu -15 298 131 575 103 4 1 chr5 42208967 42209201 -160876331 + AluSx SINE Alu 41 304 -5 1293 188 92 37 chr5 42209850 42210121 -160875411 - AluJo SINE Alu -26 286 1 333 136 0 0 chr5 42210222 42210288 -160875244 + (CA)n Simple_repeat Simple_repeat 2 67 0 1541 175 4 18 chr5 42210822 42211102 -160874430 - AluJo SINE Alu -1 311 36 691 87 10 0 chr5 42212064 42212167 -160873365 - L1MA2 LINE L1 0 6304 6201 1718 169 17 14 chr5 42212239 42212535 -160872997 + AluJb SINE Alu 1 297 -15 911 288 48 31 chr5 42212555 42212947 -160872585 + LTR16B LTR ERVL 66 464 0 576 222 86 0 chr5 42212999 42213116 -160872416 + FLAM_A SINE Alu 1 127 -6 1678 205 116 0 chr5 42213213 42213574 -160871958 + MER68 LTR ERV1 160 562 0 295 255 74 54 chr5 42213574 42213719 -160871813 + LTR16B LTR ERVL 317 464 0 2419 87 10 6 chr5 42213787 42214099 -160871433 - AluSq SINE Alu 0 313 1 216 0 0 0 chr5 42214112 42214136 -160871396 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1221 182 5 5 chr5 42214143 42214346 -160871186 + AluJb SINE Alu 103 305 -7 22 56 0 0 chr5 42214396 42214432 -160871100 + AT_rich Low_complexity Low_complexity 1 36 0 321 100 0 0 chr5 42214449 42214499 -160871033 - AluJo SINE Alu -161 141 92 5845 127 37 9 chr5 42214744 42214862 -160870670 + L1PB1 LINE L1 4469 4582 -1569 1983 124 40 7 chr5 42214862 42215160 -160870372 + AluSx SINE Alu 5 312 0 5845 127 37 9 chr5 42215160 42216671 -160868861 + L1PB1 LINE L1 4582 6144 -7 21 36 0 0 chr5 42217792 42217820 -160867712 + AT_rich Low_complexity Low_complexity 1 28 0 2218 92 7 3 chr5 42217820 42218113 -160867419 - AluSq SINE Alu -19 294 1 821 179 8 0 chr5 42218118 42218241 -160867291 - FLAM_C SINE Alu -19 124 1 9563 210 77 27 chr5 42218530 42218621 -160866911 - L1P LINE L1 -776 5379 5294 2535 48 0 10 chr5 42218621 42218930 -160866602 - AluY SINE Alu -5 306 1 9563 210 77 27 chr5 42218930 42219781 -160865751 - L1P LINE L1 -861 5294 4486 306 50 0 0 chr5 42219781 42219821 -160865711 + (TG)n Simple_repeat Simple_repeat 2 41 0 9563 210 77 27 chr5 42219821 42221078 -160864454 - L1P LINE L1 -1669 4486 3292 2340 94 10 0 chr5 42221078 42221376 -160864156 - AluSp SINE Alu -12 301 1 9563 210 77 27 chr5 42221376 42221611 -160863921 - L1P LINE L1 -2863 3292 3070 2132 116 42 53 chr5 42221611 42221836 -160863696 - THE1C LTR MaLR 0 375 154 2201 117 7 0 chr5 42221836 42222135 -160863397 + AluSc SINE Alu 1 301 -8 2132 116 42 53 chr5 42222135 42222288 -160863244 - THE1C LTR MaLR -221 154 1 10471 104 44 5 chr5 42222288 42223808 -160861724 - THE1C-int LTR MaLR 0 1580 1 2482 116 8 16 chr5 42223808 42224186 -160861346 - THE1C LTR MaLR 0 375 1 9563 210 77 27 chr5 42224186 42224670 -160860862 - L1P LINE L1 -3084 3071 2299 24 32 0 0 chr5 42225655 42225686 -160859846 + AT_rich Low_complexity Low_complexity 1 31 0 1703 179 11 0 chr5 42225848 42226133 -160859399 - AluJo SINE Alu -24 288 1 972 55 34 20 chr5 42227100 42227246 -160858286 - MER30 DNA MER1_type -74 156 9 186 218 195 11 chr5 42227679 42227766 -160857766 - MIR SINE MIR -46 216 114 538 251 82 27 chr5 42228097 42228256 -160857276 + MIR SINE MIR 98 262 0 617 355 98 28 chr5 42228995 42229608 -160855924 + L1MEd LINE L1 132 845 -5360 621 263 39 42 chr5 42229744 42229935 -160855597 + L1MEd LINE L1 981 1172 -5033 2170 123 0 3 chr5 42229935 42230236 -160855296 + AluSp SINE Alu 1 300 -13 621 263 39 42 chr5 42230236 42230356 -160855176 + L1MEd LINE L1 1172 1291 -4914 2141 105 34 0 chr5 42230411 42230706 -160854826 + AluY SINE Alu 1 305 -6 2471 67 0 0 chr5 42230853 42231152 -160854380 + AluY SINE Alu 1 299 -12 2188 109 0 13 chr5 42231307 42231611 -160853921 + AluSc SINE Alu 1 300 -9 1181 131 0 0 chr5 42231715 42231875 -160853657 - FAM SINE Alu -12 163 4 502 303 113 40 chr5 42231902 42232229 -160853303 + L1MEd LINE L1 2043 2393 -4003 1406 211 40 59 chr5 42232231 42232467 -160853065 + L1MC5 LINE L1 7345 7584 -377 2382 89 0 0 chr5 42232467 42232760 -160852772 - AluSg SINE Alu -17 293 1 1406 211 40 59 chr5 42232760 42233120 -160852412 + L1MC5 LINE L1 7584 7930 -31 417 303 46 16 chr5 42233139 42233631 -160851901 + L1MEd LINE L1 2387 2899 -3316 243 0 0 0 chr5 42234255 42234282 -160851250 + (A)n Simple_repeat Simple_repeat 1 27 0 313 242 217 32 chr5 42234775 42234932 -160850600 - MIR3 SINE MIR -10 198 13 2079 130 0 0 chr5 42235053 42235338 -160850194 + AluSx SINE Alu 2 286 -26 1549 135 93 32 chr5 42235434 42235514 -160850018 - MER44D DNA MER2_type -1890 601 527 1698 147 74 21 chr5 42235514 42235840 -160849692 + MER2 DNA MER2_type 2 344 0 1549 135 93 32 chr5 42235840 42236071 -160849461 - MER44D DNA MER2_type -1964 527 1 211 171 0 0 chr5 42236229 42236264 -160849268 - L2 LINE L2 -7 3306 3272 244 298 127 53 chr5 42236485 42236795 -160848737 + L2 LINE L2 2048 2403 -911 216 97 0 0 chr5 42236795 42236826 -160848706 + (CA)n Simple_repeat Simple_repeat 2 32 0 244 298 127 53 chr5 42236826 42236965 -160848567 + L2 LINE L2 2403 2530 -784 633 235 12 47 chr5 42237051 42237221 -160848311 + MER5A DNA MER1_type 26 189 0 227 282 202 27 chr5 42237230 42237418 -160848114 + L2 LINE L2 2633 2853 -461 452 322 29 12 chr5 42237665 42237836 -160847696 + L2 LINE L2 3140 3313 0 904 120 0 0 chr5 42238050 42238175 -160847357 + AluJb SINE Alu 1 125 -187 1383 178 13 9 chr5 42238463 42238694 -160846838 - AluJo SINE Alu -17 295 64 25 31 0 0 chr5 42238837 42238869 -160846663 + AT_rich Low_complexity Low_complexity 1 32 0 1534 221 10 10 chr5 42238895 42239202 -160846330 + AluJo SINE Alu 6 312 0 671 216 16 46 chr5 42239459 42239653 -160845879 + L1MEd LINE L1 3523 3710 -2505 1216 159 24 0 chr5 42239699 42239907 -160845625 + MER20 DNA MER1_type 6 218 -1 681 295 216 30 chr5 42240680 42240752 -160844780 + L2 LINE L2 1917 1974 -1340 879 130 15 0 chr5 42240752 42240883 -160844649 - FLAM_C SINE Alu 0 133 1 681 295 216 30 chr5 42240883 42241600 -160843932 + L2 LINE L2 1974 2853 -461 1950 167 0 0 chr5 42241658 42241958 -160843574 - AluJo SINE Alu -12 300 1 232 192 110 41 chr5 42242076 42242149 -160843383 - MIR SINE MIR -138 124 47 1922 172 0 3 chr5 42242605 42242895 -160842637 + AluJo SINE Alu 1 289 -23 31 26 0 0 chr5 42242905 42242943 -160842589 + AT_rich Low_complexity Low_complexity 1 38 0 1323 154 14 0 chr5 42243016 42243237 -160842295 + L1PA16 LINE L1 5940 6163 -3 234 0 0 0 chr5 42244216 42244242 -160841290 + (A)n Simple_repeat Simple_repeat 1 26 0 346 138 0 85 chr5 42245048 42245074 -160840458 - L1MB7 LINE L1 -11 6173 6146 2304 85 17 3 chr5 42245074 42245367 -160840165 - AluY SINE Alu -14 297 1 346 138 0 85 chr5 42245367 42245378 -160840154 - L1MB7 LINE L1 -38 6146 6136 2927 6 0 0 chr5 42245378 42245694 -160839838 - AluYb8 SINE Alu -2 316 1 346 138 0 85 chr5 42245694 42245749 -160839783 - L1MB7 LINE L1 -48 6136 6088 33 43 0 0 chr5 42246370 42246417 -160839115 + AT_rich Low_complexity Low_complexity 1 47 0 1887 133 0 40 chr5 42246564 42246864 -160838668 + AluSx SINE Alu 9 296 -16 253 187 55 33 chr5 42246912 42246955 -160838577 + L1ME4a LINE L1 5389 5430 -2378 2565 60 0 0 chr5 42246955 42247254 -160838278 - AluY SINE Alu -12 299 1 253 187 55 33 chr5 42247254 42247301 -160838231 + L1ME4a LINE L1 5430 5481 -2327 257 254 118 0 chr5 42248022 42248132 -160837400 + L1ME4a LINE L1 5968 6090 -31 2301 95 0 0 chr5 42248968 42249263 -160836269 - AluSx SINE Alu -17 295 1 292 350 25 61 chr5 42249326 42249523 -160836009 - L2 LINE L2 -496 2818 2629 1283 232 87 100 chr5 42249863 42250474 -160835058 + MER21B LTR ERV1 1 603 -260 1696 190 3 7 chr5 42251106 42251396 -160834136 + AluJo SINE Alu 1 289 -23 26 0 0 0 chr5 42251396 42251422 -160834110 + AT_rich Low_complexity Low_complexity 1 26 0 1863 146 18 26 chr5 42252673 42253015 -160832517 + MER44D DNA MER2_type 1 609 0 22 35 0 0 chr5 42253880 42253909 -160831623 + AT_rich Low_complexity Low_complexity 1 29 0 815 137 0 72 chr5 42254354 42254493 -160831039 - FLAM_C SINE Alu -14 129 1 373 262 52 86 chr5 42256695 42256962 -160828570 + L1ME4a LINE L1 5863 6120 -1 1914 109 12 0 chr5 42257118 42257375 -160828157 + AluSg SINE Alu 38 297 -13 2159 72 48 0 chr5 42257413 42257703 -160827829 + AluY SINE Alu 1 304 -7 205 290 81 0 chr5 42257728 42257790 -160827742 + MIR3 SINE MIR 119 185 -23 338 255 103 48 chr5 42257842 42257987 -160827545 - MIR SINE MIR 0 262 110 28 0 0 0 chr5 42258013 42258041 -160827491 + AT_rich Low_complexity Low_complexity 1 28 0 2259 79 7 3 chr5 42258047 42258338 -160827194 + AluSq SINE Alu 14 305 -8 21 36 0 0 chr5 42258347 42258375 -160827157 + AT_rich Low_complexity Low_complexity 1 28 0 202 348 33 33 chr5 42258376 42258468 -160827064 - MIR3 SINE MIR -103 105 14 398 79 13 13 chr5 42258488 42258564 -160826968 + L1MA4A LINE L1 6225 6300 -3 271 260 41 0 chr5 42260491 42260564 -160824968 + L2 LINE L2 3238 3313 0 265 177 151 4 chr5 42260792 42260865 -160824667 + FRAM/FAM SINE Alu 16 65 -101 429 92 79 0 chr5 42260865 42260941 -160824591 + AluS SINE Alu 1 82 -231 203 358 6 12 chr5 42261073 42261246 -160824286 + CT-rich Low_complexity Low_complexity 1 172 0 462 186 0 0 chr5 42262081 42262167 -160823365 - L1ME3A LINE L1 -10 6160 6075 603 168 8 40 chr5 42262408 42262533 -160822999 - FLAM_A SINE Alu 0 142 22 2014 85 38 24 chr5 42262907 42263200 -160822332 + AluY SINE Alu 1 297 -14 1299 171 21 39 chr5 42263480 42263766 -160821766 - AluJo SINE Alu -30 282 2 1037 143 6 12 chr5 42264623 42264784 -160820748 + AluJb SINE Alu 1 160 -152 183 156 0 0 chr5 42264809 42264841 -160820691 + A-rich Low_complexity Low_complexity 1 32 0 2387 85 0 0 chr5 42265032 42265327 -160820205 - AluY SINE Alu -16 295 1 1662 129 19 15 chr5 42266330 42266594 -160818938 + AluSx SINE Alu 48 312 0 1617 143 61 54 chr5 42266612 42266906 -160818626 + AluJo SINE Alu 5 300 -12 1823 162 7 23 chr5 42267032 42267335 -160818197 - AluJo SINE Alu -14 298 1 13591 66 10 27 chr5 42268529 42270500 -160815032 + HERVL LTR ERVL 2085 4021 -1633 2231 79 0 0 chr5 42270503 42270782 -160814750 - AluSx SINE Alu -17 295 17 1574 111 9 0 chr5 42270883 42271099 -160814433 - AluSx SINE Alu -94 218 1 404 95 32 0 chr5 42271099 42271162 -160814370 + MSTB1 LTR MaLR 364 428 -4 2088 145 0 19 chr5 42271552 42271870 -160813662 - AluJb SINE Alu 0 312 1 1887 165 3 19 chr5 42272370 42272686 -160812846 + AluJb SINE Alu 2 312 0 2014 127 0 36 chr5 42272686 42272994 -160812538 + AluSx SINE Alu 1 297 -15 1605 186 14 11 chr5 42272994 42273273 -160812259 - AluJo SINE Alu -31 281 1 2305 77 0 14 chr5 42273308 42273605 -160811927 - AluY SINE Alu -18 293 1 2782 139 58 36 chr5 42273605 42274208 -160811324 - L1PB4 LINE L1 -28 6128 5513 305 259 138 9 chr5 42274377 42274493 -160811039 - L1ME3A LINE L1 -2059 5749 5619 845 161 10 120 chr5 42274500 42274539 -160810993 - AluJo SINE Alu -139 173 131 2403 97 0 0 chr5 42274539 42274839 -160810693 - AluSg SINE Alu -10 300 1 845 161 10 120 chr5 42274839 42274991 -160810541 - AluJo SINE Alu -181 131 3 2313 104 0 7 chr5 42275113 42275421 -160810111 - AluSq SINE Alu -7 306 1 2978 167 35 7 chr5 42275482 42276022 -160809510 - MER68 LTR ERV1 -7 555 1 21 0 0 0 chr5 42276049 42276070 -160809462 + AT_rich Low_complexity Low_complexity 1 21 0 2301 93 3 10 chr5 42276082 42276392 -160809140 - AluSq SINE Alu -5 308 1 2208 92 0 3 chr5 42276445 42276763 -160808769 - AluSx SINE Alu 0 317 1 290 300 58 8 chr5 42277117 42277237 -160808295 - L2 LINE L2 -1 3312 3187 1911 124 3 18 chr5 42277645 42277928 -160807604 - AluJb SINE Alu -33 279 1 1914 164 0 16 chr5 42278057 42278369 -160807163 + AluSx SINE Alu 5 311 -1 243 146 0 0 chr5 42278426 42278467 -160807065 + (A)n Simple_repeat Simple_repeat 1 41 0 1467 142 8 23 chr5 42278602 42278841 -160806691 - Tigger2 DNA MER2_type 0 2718 2482 2274 107 7 0 chr5 42278841 42279139 -160806393 + AluSp SINE Alu 1 300 -13 1467 142 8 23 chr5 42279139 42279159 -160806373 - Tigger2 DNA MER2_type -236 2482 2463 3764 167 26 23 chr5 42279223 42279702 -160805830 - Tigger2 DNA MER2_type -1974 744 261 1821 148 0 46 chr5 42279702 42280007 -160805525 - AluJb SINE Alu -21 291 1 3764 167 26 23 chr5 42280007 42280269 -160805263 - Tigger2 DNA MER2_type -2457 261 1 26 50 0 0 chr5 42280860 42280900 -160804632 + AT_rich Low_complexity Low_complexity 1 40 0 370 221 0 0 chr5 42280900 42280968 -160804564 - FLAM_A SINE Alu -8 125 58 860 105 0 0 chr5 42280968 42281082 -160804450 - AluSp/q SINE Alu -17 296 183 5044 226 41 3 chr5 42281241 42282499 -160803033 - L1M2 LINE L1 -4464 2385 1080 501 339 17 13 chr5 42282881 42283114 -160802418 - L1M2 LINE L1 -6419 430 197 1875 157 10 22 chr5 42283212 42283525 -160802007 - AluJo SINE Alu -3 309 1 2096 128 0 7 chr5 42283539 42283844 -160801688 - AluSg1 SINE Alu -6 303 1 47 0 0 0 chr5 42284270 42284317 -160801215 + AT_rich Low_complexity Low_complexity 1 47 0 198 103 0 0 chr5 42286390 42286419 -160799113 + (T)n Simple_repeat Simple_repeat 1 29 0 593 271 111 76 chr5 42286443 42286657 -160798875 - L2 LINE L2 -69 3244 3039 2294 62 0 36 chr5 42286657 42286961 -160798571 - AluY SINE Alu -18 293 1 593 271 111 76 chr5 42286961 42287112 -160798420 - L2 LINE L2 -274 3039 2895 1521 169 48 11 chr5 42287112 42287451 -160798081 + AluJb SINE Alu 1 349 0 593 271 111 76 chr5 42287451 42287606 -160797926 - L2 LINE L2 -418 2895 2696 180 300 12 100 chr5 42288416 42288496 -160797036 - L2 LINE L2 -67 3205 3133 395 184 135 80 chr5 42288609 42288772 -160796760 + MER112 DNA MER1_type 77 248 -12 834 200 130 0 chr5 42289261 42289446 -160796086 + MER3 DNA MER1_type 1 209 0 1016 168 6 0 chr5 42289479 42289640 -160795892 + AluJb SINE Alu 135 296 -16 2206 119 0 3 chr5 42290323 42290635 -160794897 - AluSx SINE Alu -1 311 1 25 0 0 0 chr5 42290746 42290771 -160794761 + AT_rich Low_complexity Low_complexity 1 25 0 258 281 16 0 chr5 42290919 42290983 -160794549 - L3 LINE CR1 -11 1566 1502 354 281 39 45 chr5 42291407 42291585 -160793947 + L1MEd LINE L1 2 178 -5941 1607 215 96 15 chr5 42291675 42291692 -160793840 + L1ME1 LINE L1 5664 5678 -488 1876 169 3 19 chr5 42291692 42291999 -160793533 + AluJb SINE Alu 1 302 -10 1607 215 96 15 chr5 42291999 42292441 -160793091 + L1ME1 LINE L1 5678 6157 -9 257 254 118 0 chr5 42293229 42293339 -160792193 - L1ME4a LINE L1 -31 6090 5968 2546 57 0 0 chr5 42294107 42294403 -160791129 + AluY SINE Alu 1 296 -15 1903 166 7 0 chr5 42294552 42294847 -160790685 + AluJo SINE Alu 1 297 -15 311 183 70 0 chr5 42295646 42295717 -160789815 + L1MC5 LINE L1 7155 7230 -731 2081 123 10 3 chr5 42295878 42296188 -160789344 + AluSx SINE Alu 1 312 0 348 240 107 53 chr5 42296232 42296382 -160789150 + L1MC5 LINE L1 7334 7491 -470 711 169 42 30 chr5 42296827 42296993 -160788539 + MLT1E2 LTR MaLR 457 624 -2 994 153 48 19 chr5 42297027 42297236 -160788296 - L1MB7 LINE L1 -19 6165 5951 22 56 0 0 chr5 42297926 42297962 -160787570 + AT_rich Low_complexity Low_complexity 1 36 0 1068 171 0 0 chr5 42298255 42298431 -160787101 + FRAM SINE Alu 1 171 -5 360 218 105 40 chr5 42298817 42298941 -160786591 + L2 LINE L2 3138 3269 -3 638 321 85 54 chr5 42299005 42299559 -160785973 + MLT1K LTR MaLR 18 588 0 1395 152 0 0 chr5 42300137 42300341 -160785191 - AluJb SINE Alu -15 297 94 1376 133 133 0 chr5 42300450 42300661 -160784871 - AluSx SINE Alu -73 239 1 499 251 59 75 chr5 42301127 42301246 -160784286 - MER112 DNA MER1_type -2 254 135 2333 111 0 3 chr5 42301246 42301553 -160783979 + AluSx SINE Alu 1 306 -6 499 251 59 75 chr5 42301553 42301688 -160783844 - MER112 DNA MER1_type -121 135 4 1431 152 20 48 chr5 42301818 42302068 -160783464 + AluJo SINE Alu 1 243 -69 4563 111 90 126 chr5 42302203 42302780 -160782752 + Tigger3b DNA MER2_type 2 598 -2430 751 156 7 30 chr5 42302780 42302915 -160782617 + AluJo SINE Alu 1 132 -170 1797 168 13 0 chr5 42302918 42303216 -160782316 + AluSx SINE Alu 1 302 -10 560 217 8 42 chr5 42303222 42303342 -160782190 + AluJo SINE Alu 141 256 -56 4563 111 90 126 chr5 42303342 42303737 -160781795 + Tigger3b DNA MER2_type 605 1064 -167 785 143 0 0 chr5 42303768 42303880 -160781652 - FAM SINE Alu -19 166 55 741 195 104 0 chr5 42303881 42304035 -160781497 + Tigger3b DNA MER2_type 1061 1230 -1 2369 65 34 0 chr5 42304112 42304405 -160781127 + AluY SINE Alu 1 303 -8 2123 89 10 17 chr5 42304416 42304707 -160780825 + AluSg SINE Alu 1 289 -21 2117 148 0 0 chr5 42304902 42305206 -160780326 + AluSx SINE Alu 1 304 -8 957 160 6 29 chr5 42305258 42305433 -160780099 - FRAM SINE Alu -5 171 1 2321 111 0 7 chr5 42305444 42305751 -160779781 - AluSg SINE Alu -5 305 1 981 157 54 0 chr5 42306188 42306354 -160779178 - FAM SINE Alu 0 175 1 1511 62 10 16 chr5 42306400 42306594 -160778938 + AluY SINE Alu 1 193 -118 2304 89 3 3 chr5 42306792 42307084 -160778448 + AluSg SINE Alu 1 292 -18 405 172 99 6 chr5 42307463 42307695 -160777837 + AluJo SINE Alu 1 297 -5 512 92 64 29 chr5 42308393 42308566 -160776966 + (TA)n Simple_repeat Simple_repeat 2 180 0 2428 72 3 0 chr5 42308578 42308870 -160776662 - AluSp SINE Alu -19 294 2 896 213 35 0 chr5 42309465 42309639 -160775893 + AluJo SINE Alu 119 298 -14 1991 51 31 8 chr5 42309639 42309893 -160775639 + AluY SINE Alu 50 309 -2 486 0 0 0 chr5 42310019 42310073 -160775459 + (TA)n Simple_repeat Simple_repeat 1 54 0 1901 171 3 28 chr5 42310878 42311205 -160774327 - 7SLRNA srpRNA srpRNA -1 319 1 482 240 260 0 chr5 42311367 42311408 -160774124 + MER5A DNA MER1_type 1 30 -159 1691 116 4 16 chr5 42311408 42311659 -160773873 + AluSx SINE Alu 62 309 -3 482 240 260 0 chr5 42311659 42311767 -160773765 + MER5A DNA MER1_type 30 189 0 2038 123 28 3 chr5 42312524 42312809 -160772723 - AluSx SINE Alu -14 298 7 2272 88 0 7 chr5 42312860 42313155 -160772377 - AluSq SINE Alu -20 293 1 682 153 22 22 chr5 42313264 42313401 -160772131 + FAM SINE Alu 1 41 -8 255 233 41 0 chr5 42313458 42313531 -160772001 + L1MC5 LINE L1 7158 7233 -728 193 222 44 0 chr5 42315353 42315398 -160770134 - L2 LINE L2 -12 3301 3255 2345 94 0 0 chr5 42315762 42316060 -160769472 - AluSg SINE Alu -12 298 1 649 172 9 9 chr5 42316346 42316462 -160769070 + MER3 DNA MER1_type 6 121 -88 785 249 9 6 chr5 42316479 42316684 -160768848 - MLT1J1 LTR MaLR -223 227 15 1432 132 21 155 chr5 42316816 42317013 -160768519 + MSTA LTR MaLR 2 171 -255 816 161 0 0 chr5 42317013 42317131 -160768401 + AluSg/x SINE Alu 171 288 -22 1432 132 21 155 chr5 42317131 42317357 -160768175 + MSTA LTR MaLR 171 426 0 214 317 0 0 chr5 42317360 42317420 -160768112 - MER5A DNA MER1_type -2 187 128 1326 131 0 0 chr5 42317423 42317599 -160767933 + AluSx SINE Alu 1 176 -136 2374 94 0 3 chr5 42317972 42318269 -160767263 + AluSx SINE Alu 1 296 -16 1177 137 0 0 chr5 42318269 42318430 -160767102 + AluSg/x SINE Alu 132 292 -18 208 180 20 0 chr5 42318505 42318555 -160766977 + (TA)n Simple_repeat Simple_repeat 2 52 0 2174 129 0 0 chr5 42318615 42318918 -160766614 + AluSx SINE Alu 1 303 -9 2182 150 110 12 chr5 42318918 42319317 -160766215 + MER65A LTR ERV1 8 445 0 884 236 73 63 chr5 42319404 42319825 -160765707 + MER65A-int LTR ERV1 83 564 -4307 2498 68 3 13 chr5 42319825 42320136 -160765396 - AluY SINE Alu -3 308 1 884 236 73 63 chr5 42320136 42320334 -160765198 + MER65A-int LTR ERV1 564 759 -4112 474 198 81 0 chr5 42320334 42320420 -160765112 - AluJ/FLAM SINE Alu -218 94 2 885 161 15 49 chr5 42320567 42320772 -160764760 + MER31-int LTR ERV1 3533 3730 -2868 824 144 6 77 chr5 42320852 42321033 -160764499 + MER31-int LTR ERV1 3730 3897 -2701 417 211 0 0 chr5 42321041 42321117 -160764415 - FLAM_A SINE Alu -22 120 45 437 158 100 25 chr5 42321117 42321237 -160764295 + MER31-int LTR ERV1 3884 4012 -2586 1505 202 80 100 chr5 42321258 42321658 -160763874 + MER31-int LTR ERV1 4602 5008 -1590 2217 129 0 10 chr5 42321658 42321793 -160763739 + AluSq SINE Alu 1 136 -177 2384 87 0 13 chr5 42321793 42322104 -160763428 + AluY SINE Alu 1 307 -4 2217 129 0 10 chr5 42322104 42322278 -160763254 + AluSq SINE Alu 136 307 -6 2220 103 17 0 chr5 42322284 42322576 -160762956 + AluSp SINE Alu 1 297 -16 1505 202 80 100 chr5 42322576 42322627 -160762905 + MER31-int LTR ERV1 5013 5064 -1534 2131 112 0 0 chr5 42322627 42322945 -160762587 - AluSx SINE Alu 0 318 1 1505 202 80 100 chr5 42322945 42323039 -160762493 + MER31-int LTR ERV1 5064 5158 -1440 1745 199 0 3 chr5 42323039 42323345 -160762187 + AluJb SINE Alu 1 305 -7 1505 202 80 100 chr5 42323345 42323534 -160761998 + MER31-int LTR ERV1 5158 5349 -1249 16908 52 4 0 chr5 42323534 42326385 -160759147 - L1PA5 LINE L1 -4 6150 3282 1505 202 80 100 chr5 42326385 42326486 -160759046 + MER31-int LTR ERV1 5349 5451 -1147 250 80 40 0 chr5 42326486 42326536 -160758996 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1894 164 0 0 chr5 42326539 42326819 -160758713 - AluSx SINE Alu -30 282 3 1987 125 28 0 chr5 42326821 42327110 -160758422 - AluSx SINE Alu -15 297 1 1505 202 80 100 chr5 42327110 42327213 -160758319 + MER31-int LTR ERV1 5454 5584 -1014 329 236 0 42 chr5 42327233 42327305 -160758227 + MER31-int LTR ERV1 3884 3952 -984 2396 89 0 0 chr5 42327367 42327670 -160757862 + AluY SINE Alu 1 303 -8 1887 249 77 28 chr5 42327692 42328202 -160757330 + MER31-int LTR ERV1 3598 4132 -739 672 198 90 6 chr5 42328205 42328382 -160757150 + MER31-int LTR ERV1 4240 4431 -440 2751 161 16 31 chr5 42328390 42328547 -160756985 - L1MA3 LINE L1 0 6305 6147 2221 121 0 0 chr5 42328547 42328845 -160756687 + AluSc SINE Alu 1 298 -11 2751 161 16 31 chr5 42328845 42329239 -160756293 - L1MA3 LINE L1 -158 6147 5762 3196 86 20 14 chr5 42329239 42329680 -160755852 - MLT2A1 LTR ERVL 0 444 1 45726 62 6 12 chr5 42329680 42331314 -160754218 - HERVL-A1 LTR ERVL 0 5654 4011 2335 92 0 0 chr5 42331314 42331609 -160753923 + AluSx SINE Alu 1 295 -17 45726 62 6 12 chr5 42331609 42333805 -160751727 - HERVL-A1 LTR ERVL -1643 4011 1802 2344 104 0 0 chr5 42333805 42334104 -160751428 + AluSx SINE Alu 1 299 -13 45726 62 6 12 chr5 42334104 42334494 -160751038 - HERVL-A1 LTR ERVL -3852 1802 1411 2238 111 3 0 chr5 42334494 42334791 -160750741 - AluSx SINE Alu -2 310 13 45726 62 6 12 chr5 42334791 42336259 -160749273 - HERVL-A1 LTR ERVL -4243 1411 1 2661 102 82 5 chr5 42336259 42336299 -160749233 - MLT2A1 LTR ERVL 0 444 409 432 0 0 0 chr5 42336299 42336347 -160749185 + (CA)n Simple_repeat Simple_repeat 2 49 0 2661 102 82 5 chr5 42336347 42336718 -160748814 - MLT2A1 LTR ERVL -35 409 1 415 256 17 26 chr5 42337002 42337119 -160748413 + HsTC2 DNA Tc2 1282 1573 -325 1066 233 115 58 chr5 42337137 42337571 -160747961 - LTR40c LTR ERVL -6 459 1 808 187 30 123 chr5 42337571 42337771 -160747761 + HsTC2 DNA Tc2 1567 1784 -114 2446 76 0 3 chr5 42337771 42338073 -160747459 - AluSc SINE Alu -8 301 1 808 187 30 123 chr5 42338073 42338152 -160747380 + HsTC2 DNA Tc2 1784 1797 -101 2347 110 0 0 chr5 42338152 42338462 -160747070 - AluSg SINE Alu 0 310 1 808 187 30 123 chr5 42338462 42338554 -160746978 + HsTC2 DNA Tc2 1797 1896 -2 1301 148 0 38 chr5 42338769 42339017 -160746515 + AluJb SINE Alu 83 322 0 23 33 0 0 chr5 42339329 42339359 -160746173 + AT_rich Low_complexity Low_complexity 1 30 0 447 141 0 0 chr5 42339501 42339572 -160745960 + AluS SINE Alu 2 72 -246 1753 124 17 27 chr5 42339572 42339871 -160745661 + LTR7 LTR ERV1 153 448 -2 1756 97 0 4 chr5 42339871 42340099 -160745433 + AluSq SINE Alu 72 298 -15 1536 167 52 11 chr5 42340370 42340657 -160744875 - AluJo SINE Alu -13 299 1 2457 207 49 67 chr5 42340858 42341086 -160744446 - L1ME LINE L1 -371 6031 5800 2278 121 0 10 chr5 42341086 42341399 -160744133 - AluSq SINE Alu -3 310 1 2457 207 49 67 chr5 42341399 42341730 -160743802 - L1ME LINE L1 -602 5800 5465 1796 124 83 0 chr5 42341730 42341996 -160743536 - AluSq SINE Alu -25 288 1 2457 207 49 67 chr5 42341996 42342172 -160743360 - L1ME LINE L1 -937 5465 5287 2375 106 0 6 chr5 42342172 42342484 -160743048 + AluSx SINE Alu 1 310 -2 2164 126 7 3 chr5 42342487 42342796 -160742736 + AluSp SINE Alu 1 310 -3 2457 207 49 67 chr5 42342796 42343368 -160742164 - L1ME LINE L1 -1117 5285 4747 763 150 0 0 chr5 42343375 42343488 -160742044 - AluSc SINE Alu -26 283 171 399 206 15 0 chr5 42343488 42343556 -160741976 - AluJ/FLAM SINE Alu -233 69 1 2184 111 3 0 chr5 42343599 42343887 -160741645 - AluSq SINE Alu -24 289 1 1142 238 67 67 chr5 42343888 42344098 -160741434 - L1ME LINE L1 -1747 4635 4427 2266 104 0 3 chr5 42344098 42344397 -160741135 + AluSg SINE Alu 1 298 -12 1142 238 67 67 chr5 42344397 42344547 -160740985 - L1ME LINE L1 -1955 4427 4279 3757 105 0 8 chr5 42344547 42345062 -160740470 - MER9 LTR ERVK 0 511 1 1142 238 67 67 chr5 42345062 42345237 -160740295 - L1ME LINE L1 -2103 4279 1342 2129 119 0 7 chr5 42345785 42346079 -160739453 - AluSg SINE Alu -18 292 1 2234 127 48 20 chr5 42346598 42346952 -160738580 - THE1B LTR MaLR 0 364 1 8189 127 118 17 chr5 42346952 42347259 -160738273 - THE1B-int LTR MaLR 0 1580 1305 2120 108 30 3 chr5 42347259 42347554 -160737978 - AluSx SINE Alu -9 303 1 8189 127 118 17 chr5 42347554 42348682 -160736850 - THE1B-int LTR MaLR -275 1305 1 2053 122 78 23 chr5 42348682 42348720 -160736812 - THE1B LTR MaLR 0 364 330 1507 113 74 58 chr5 42348720 42348977 -160736555 + AluSg SINE Alu 13 273 -37 2053 122 78 23 chr5 42348977 42349283 -160736249 - THE1B LTR MaLR -34 330 1 2118 125 7 0 chr5 42349306 42349594 -160735938 + AluSx SINE Alu 1 290 -22 1567 104 170 4 chr5 42349793 42350052 -160735480 + AluSg SINE Alu 1 302 -8 1208 178 13 18 chr5 42350322 42350488 -160735044 - AluSg/x SINE Alu -12 300 134 2158 126 0 3 chr5 42350488 42350789 -160734743 - AluSx SINE Alu -12 300 1 1208 178 13 18 chr5 42350789 42350847 -160734685 - AluSg/x SINE Alu -178 134 77 2344 86 17 0 chr5 42350856 42351148 -160734384 - AluSp SINE Alu -16 297 1 2255 112 0 0 chr5 42351644 42351938 -160733594 - AluSp SINE Alu -19 294 1 287 349 28 0 chr5 42352064 42352173 -160733359 - L2 LINE L2 -602 2712 2601 2073 120 3 13 chr5 42352470 42352770 -160732762 - AluSx SINE Alu -15 297 1 729 180 0 43 chr5 42353349 42353488 -160732044 + FLAM_C SINE Alu 1 133 0 2224 97 0 27 chr5 42353511 42353810 -160731722 + AluSp SINE Alu 1 291 -22 843 179 61 33 chr5 42353843 42354055 -160731477 + AluJo SINE Alu 85 302 -10 256 288 17 85 chr5 42354112 42354230 -160731302 + MER5A DNA MER1_type 80 189 0 2147 128 3 3 chr5 42354926 42355231 -160730301 + AluSx SINE Alu 1 305 -7 1187 150 5 60 chr5 42355474 42355674 -160729858 - MER5A DNA MER1_type 0 189 1 2168 111 0 10 chr5 42355976 42356273 -160729259 - AluSg SINE Alu -16 294 1 2461 57 3 3 chr5 42356948 42357245 -160728287 - AluY SINE Alu -14 297 1 338 284 56 15 chr5 42358070 42358217 -160727315 + MIR SINE MIR 18 167 -59 24 53 0 0 chr5 42358503 42358541 -160726991 + AT_rich Low_complexity Low_complexity 1 38 0 32 26 0 0 chr5 42358683 42358722 -160726810 + AT_rich Low_complexity Low_complexity 1 39 0 793 206 42 42 chr5 42358980 42359145 -160726387 - FAM SINE Alu -10 165 1 685 168 80 8 chr5 42359190 42359315 -160726217 + L1MB7 LINE L1 5934 6067 -117 7204 55 10 25 chr5 42359436 42361129 -160724403 + SVA Other Other 16 1409 0 1121 107 0 13 chr5 42361306 42361455 -160724077 + AluSq/x SINE Alu 1 147 -166 284 228 0 0 chr5 42361457 42361514 -160724018 + FLAM SINE Alu 76 132 -1 1091 158 38 5 chr5 42361540 42361724 -160723808 - AluJo SINE Alu -116 196 7 1815 159 0 3 chr5 42361791 42362095 -160723437 - AluJb SINE Alu 0 303 1 1977 138 3 3 chr5 42362370 42362668 -160722864 + AluSx SINE Alu 1 298 -14 1734 115 77 49 chr5 42364167 42364453 -160721079 + AluSc SINE Alu 1 294 -15 21 36 0 0 chr5 42364540 42364568 -160720964 + AT_rich Low_complexity Low_complexity 1 28 0 1808 87 102 4 chr5 42364570 42364836 -160720696 - L1MA1 LINE L1 -4 6298 6007 1238 173 4 18 chr5 42365064 42365236 -160720296 - AluJb SINE Alu -6 306 136 2299 90 7 10 chr5 42365236 42365537 -160719995 - AluSx SINE Alu -12 300 1 1238 173 4 18 chr5 42365537 42365589 -160719943 - AluJb SINE Alu -176 136 85 393 266 67 110 chr5 42366198 42366500 -160719032 + MLT1J LTR MaLR 51 339 -70 2200 114 3 10 chr5 42366639 42366947 -160718585 - AluSg SINE Alu -4 306 1 1648 174 23 27 chr5 42368077 42368376 -160717156 + AluJb SINE Alu 1 298 -14 2399 96 0 6 chr5 42368379 42368691 -160716841 + AluSx SINE Alu 1 310 -2 354 314 18 47 chr5 42368755 42368924 -160716608 - MIR3 SINE MIR -24 184 21 226 200 62 15 chr5 42369355 42369420 -160716112 + HsTC2 DNA Tc2 915 982 -916 1701 148 3 58 chr5 42369681 42369810 -160715722 + AluJo SINE Alu 7 142 -170 1786 177 7 0 chr5 42369810 42370120 -160715412 + AluSx SINE Alu 1 312 0 1701 148 3 58 chr5 42370120 42370300 -160715232 + AluJo SINE Alu 142 299 -13 1736 164 3 52 chr5 42370520 42370844 -160714688 + AluJo SINE Alu 2 309 -3 2106 119 3 0 chr5 42370881 42371175 -160714357 - AluSg SINE Alu -15 295 1 331 146 0 0 chr5 42371264 42371312 -160714220 + Alu SINE Alu 3 50 -252 2174 141 0 0 chr5 42371326 42371638 -160713894 + AluSx SINE Alu 1 312 0 2297 116 0 3 chr5 42372051 42372362 -160713170 + AluSg SINE Alu 1 310 0 2163 90 12 65 chr5 42372678 42372824 -160712708 + AluSx SINE Alu 1 153 -159 2438 75 13 3 chr5 42372824 42373131 -160712401 + AluY SINE Alu 1 310 -1 2163 90 12 65 chr5 42373131 42373307 -160712225 + AluSx SINE Alu 153 306 -6 1586 138 26 4 chr5 42374178 42374409 -160711123 + AluSg SINE Alu 1 236 -74 1480 196 49 3 chr5 42374462 42374748 -160710784 + AluJo SINE Alu 1 299 -13 241 275 44 44 chr5 42374796 42374887 -160710645 - MIR3 SINE MIR -41 167 77 25 0 0 0 chr5 42375208 42375233 -160710299 + AT_rich Low_complexity Low_complexity 1 25 0 295 253 66 22 chr5 42375307 42375398 -160710134 - MIR3 SINE MIR -4 204 110 272 201 21 167 chr5 42376077 42376143 -160709389 + L1MC5 LINE L1 7110 7145 -816 2098 132 0 3 chr5 42376143 42376453 -160709079 + AluSx SINE Alu 1 309 -3 272 201 21 167 chr5 42376453 42376530 -160709002 + L1MC5 LINE L1 7145 7232 -729 343 254 69 81 chr5 42376638 42376984 -160708548 + L1MC5 LINE L1 7255 7596 -365 1367 144 0 10 chr5 42377035 42377243 -160708289 + AluJb SINE Alu 85 290 -22 2111 105 20 10 chr5 42377555 42377859 -160707673 + AluSx SINE Alu 2 308 -4 291 54 0 0 chr5 42377872 42377909 -160707623 + (TG)n Simple_repeat Simple_repeat 1 37 0 1673 173 3 11 chr5 42377922 42378206 -160707326 - AluJb SINE Alu -30 282 1 21 0 0 0 chr5 42378579 42378600 -160706932 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr5 42378745 42378767 -160706765 + AT_rich Low_complexity Low_complexity 1 22 0 1711 80 0 13 chr5 42378959 42379183 -160706349 + AluY SINE Alu 1 221 -90 2017 139 0 0 chr5 42379353 42379647 -160705885 + AluSx SINE Alu 1 294 -18 3512 113 87 101 chr5 42379886 42380013 -160705519 + L1MB3 LINE L1 5383 5510 -673 2160 117 10 0 chr5 42380013 42380312 -160705220 + AluSq SINE Alu 1 302 -11 3512 113 87 101 chr5 42380312 42380822 -160704710 + L1MB3 LINE L1 5510 6025 -158 2249 108 0 0 chr5 42380822 42381117 -160704415 - AluSq SINE Alu -18 295 1 3512 113 87 101 chr5 42381117 42381233 -160704299 + L1MB3 LINE L1 6025 6141 -42 2346 89 0 22 chr5 42381233 42381549 -160703983 + AluY SINE Alu 1 309 -2 2238 107 7 3 chr5 42381559 42381869 -160703663 + AluSp SINE Alu 1 311 -2 3512 113 87 101 chr5 42381869 42381914 -160703618 + L1MB3 LINE L1 6150 6183 0 934 179 6 0 chr5 42382041 42382203 -160703329 - AluSg/x SINE Alu -12 300 138 393 192 77 0 chr5 42382467 42382571 -160702961 - L1MB8 LINE L1 -1 6177 6066 419 299 109 58 chr5 42382598 42382818 -160702714 + HAL1 LINE L1 1045 1252 -1255 1224 191 13 13 chr5 42382818 42383049 -160702483 + MER46A DNA MER2_type 2 232 -4 419 299 109 58 chr5 42383049 42383350 -160702182 + HAL1 LINE L1 1252 1593 -914 1529 215 32 29 chr5 42383351 42383727 -160701805 + L1MB8 LINE L1 5802 6178 0 259 164 0 18 chr5 42383811 42383866 -160701666 + L1M4 LINE L1 3877 3930 -2216 1717 180 3 20 chr5 42383936 42384242 -160701290 + AluJb SINE Alu 1 301 -11 1255 208 102 7 chr5 42384258 42384532 -160701000 + AluJo SINE Alu 5 304 -8 2238 87 3 10 chr5 42384549 42384847 -160700685 + AluSp SINE Alu 1 296 -17 1889 166 0 0 chr5 42385420 42385710 -160699822 + AluSx SINE Alu 1 290 -22 2148 96 0 4 chr5 42385793 42386073 -160699459 + AluSc SINE Alu 1 279 -30 2209 97 7 0 chr5 42386220 42386510 -160699022 - AluSp SINE Alu -21 292 1 829 146 8 0 chr5 42386520 42386643 -160698889 - FLAM_C SINE Alu -19 124 1 2503 57 0 0 chr5 42386782 42387079 -160698453 + AluY SINE Alu 1 297 -14 1914 82 0 16 chr5 42387097 42387340 -160698192 + AluSq SINE Alu 55 293 -20 1847 141 0 14 chr5 42387357 42387640 -160697892 + AluSg SINE Alu 1 279 -31 754 171 270 5 chr5 42387640 42387851 -160697681 + L1MB7 LINE L1 5663 5929 -255 376 234 47 0 chr5 42387869 42388040 -160697492 + (TA)n Simple_repeat Simple_repeat 1 179 0 1291 177 28 24 chr5 42388049 42388298 -160697234 + L1MB7 LINE L1 5919 6168 -16 735 246 44 36 chr5 42388632 42388884 -160696648 - L1ME3 LINE L1 -7 6155 5902 1108 217 118 33 chr5 42388919 42389191 -160696341 - AluJo SINE Alu -6 296 2 1833 137 22 4 chr5 42389230 42389501 -160696031 + AluSq SINE Alu 1 276 -37 296 133 0 0 chr5 42389501 42389546 -160695986 + AluSp/q SINE Alu 238 282 -21 434 287 27 40 chr5 42389654 42389804 -160695728 - MIR SINE MIR -75 187 40 1949 157 0 3 chr5 42389843 42390148 -160695384 + AluJb SINE Alu 2 305 -7 1508 238 33 66 chr5 42390692 42391146 -160694386 + MLT1H LTR MaLR 3 441 -108 1825 108 44 30 chr5 42391213 42391508 -160694024 + Tigger2a DNA MER2_type 1 299 -135 321 85 0 0 chr5 42391492 42391539 -160693993 + U7 snRNA snRNA 2 48 -15 * 617 161 125 83 chr5 42391586 42391754 -160693778 + Tigger2a DNA MER2_type 270 444 0 2137 123 0 3 chr5 42392860 42393161 -160692371 - AluSx SINE Alu -12 300 1 303 298 24 0 chr5 42394538 42394622 -160690910 + L2 LINE L2 3227 3312 -1 512 242 222 31 chr5 42394801 42394993 -160690539 - MIR SINE MIR -17 245 7 260 27 27 0 chr5 42395085 42395122 -160690410 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2375 84 0 0 chr5 42395224 42395520 -160690012 + AluY SINE Alu 1 296 -15 2205 98 3 3 chr5 42395648 42395935 -160689597 + AluSp SINE Alu 1 287 -26 284 253 24 12 chr5 42396262 42396345 -160689187 + AluJo SINE Alu 121 204 -98 400 95 0 189 chr5 42396625 42396667 -160688865 + MADE1 DNA Mariner 1 17 -63 1859 57 0 9 chr5 42396667 42396894 -160688638 - AluY SINE Alu -5 306 82 400 95 0 189 chr5 42396894 42396946 -160688586 + MADE1 DNA Mariner 17 77 -3 1505 195 11 3 chr5 42397029 42397341 -160688191 + AluJb SINE Alu 1 312 0 2347 97 3 0 chr5 42397425 42397725 -160687807 + AluSx SINE Alu 1 301 -11 2112 112 41 0 chr5 42398159 42398453 -160687079 - AluSp SINE Alu -7 306 1 1545 183 0 4 chr5 42398460 42398723 -160686809 - AluJb SINE Alu -18 294 33 1975 144 0 10 chr5 42398737 42399036 -160686496 - AluSx SINE Alu -16 296 1 2226 104 7 0 chr5 42399230 42399528 -160686004 + AluSx SINE Alu 1 300 -12 1328 164 19 0 chr5 42399535 42399749 -160685783 + AluJo SINE Alu 84 301 -11 281 292 108 36 chr5 42399778 42400019 -160685513 - L1MC4 LINE L1 -46 7925 7639 1586 166 10 59 chr5 42400019 42400326 -160685206 + AluJb SINE Alu 1 292 -20 281 292 108 36 chr5 42400326 42400458 -160685074 - L1MC4 LINE L1 -332 7639 7518 1290 179 0 0 chr5 42400559 42400760 -160684772 + AluJo SINE Alu 10 210 -102 455 176 69 46 chr5 42400810 42400941 -160684591 - MIR SINE MIR -10 252 119 308 171 11 102 chr5 42402340 42402391 -160683141 - MADE1 DNA Mariner 0 80 39 2233 114 3 0 chr5 42402391 42402689 -160682843 + AluSg SINE Alu 1 299 -11 308 171 11 102 chr5 42402689 42402725 -160682807 - MADE1 DNA Mariner -41 39 1 2538 51 10 0 chr5 42402762 42403056 -160682476 - AluY SINE Alu -14 297 1 304 209 79 40 chr5 42403160 42403253 -160682279 + HsTC2 DNA Tc2 1 1815 -83 22 56 0 0 chr5 42403253 42403289 -160682243 + AT_rich Low_complexity Low_complexity 1 36 0 675 163 17 2 chr5 42403439 42403677 -160681855 + AluJ SINE Alu 2 300 -12 1841 156 0 0 chr5 42403704 42403979 -160681553 + AluJb SINE Alu 8 282 -30 1961 209 20 43 chr5 42403996 42404110 -160681422 + L1M4 LINE L1 4504 4619 -1527 1858 160 17 0 chr5 42404110 42404410 -160681122 - AluSx SINE Alu -7 305 1 1961 209 20 43 chr5 42404410 42404508 -160681024 + L1M4 LINE L1 4619 4718 -1428 1808 154 7 20 chr5 42404508 42404806 -160680726 + AluJb SINE Alu 1 294 -18 1961 209 20 43 chr5 42404806 42405132 -160680400 + L1M4 LINE L1 4718 5031 -1115 1189 164 0 0 chr5 42405158 42405353 -160680179 - L1PA16 LINE L1 -9 6157 5963 1226 106 0 0 chr5 42405718 42405879 -160679653 - AluSg/x SINE Alu -18 292 132 2437 97 0 0 chr5 42405879 42406190 -160679342 - AluY SINE Alu 0 311 1 1638 201 0 41 chr5 42406379 42406697 -160678835 - AluJo SINE Alu -7 305 1 2164 93 0 39 chr5 42407088 42407398 -160678134 - AluSx SINE Alu -14 298 1 2524 80 0 0 chr5 42407412 42407723 -160677809 - AluY SINE Alu 0 311 1 345 298 147 16 chr5 42407850 42407958 -160677574 + L1MC4a LINE L1 7118 7210 -598 2045 147 7 7 chr5 42407958 42408264 -160677268 + AluSx SINE Alu 1 306 -6 345 298 147 16 chr5 42408264 42408407 -160677125 + L1MC4a LINE L1 7210 7402 -406 1874 162 3 10 chr5 42408412 42408720 -160676812 + AluSx SINE Alu 6 311 -1 21 0 0 0 chr5 42408838 42408859 -160676673 + AT_rich Low_complexity Low_complexity 1 21 0 1971 93 100 0 chr5 42408968 42409238 -160676294 + AluSg SINE Alu 1 297 -13 1238 154 128 41 chr5 42409246 42409512 -160676020 + AluJb SINE Alu 5 293 -19 1846 154 0 17 chr5 42409582 42409880 -160675652 + AluJb SINE Alu 10 302 -10 2011 132 0 20 chr5 42409973 42410276 -160675256 + AluSg SINE Alu 2 298 -12 1033 216 14 0 chr5 42410433 42410641 -160674891 + AluJo SINE Alu 87 297 -15 2250 102 3 0 chr5 42410741 42411035 -160674497 + AluSq SINE Alu 5 299 -14 188 268 100 44 chr5 42411093 42411200 -160674332 + MIR SINE MIR 40 145 -63 1904 172 0 0 chr5 42411293 42411595 -160673937 + AluJb SINE Alu 1 302 -10 2427 83 3 3 chr5 42411763 42412065 -160673467 + AluSp SINE Alu 1 302 -11 1878 124 3 60 chr5 42412070 42412205 -160673327 + AluSx SINE Alu 1 142 -171 2171 94 3 7 chr5 42412205 42412491 -160673041 + AluSc SINE Alu 1 285 -24 1878 124 3 60 chr5 42412491 42412685 -160672847 + AluSx SINE Alu 142 313 0 2233 120 0 0 chr5 42413113 42413405 -160672127 - AluSx SINE Alu -19 293 2 1970 134 3 53 chr5 42414871 42415191 -160670341 + AluSx SINE Alu 1 304 -8 2279 90 10 10 chr5 42415800 42416099 -160669433 - AluY SINE Alu -12 299 1 273 75 0 0 chr5 42416209 42416249 -160669283 + (TG)n Simple_repeat Simple_repeat 2 41 0 2046 107 0 44 chr5 42416286 42416421 -160669111 + AluSp SINE Alu 1 140 -174 2139 101 0 7 chr5 42416421 42416698 -160668834 + AluSg SINE Alu 1 275 -35 210 37 0 0 chr5 42416706 42416733 -160668799 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2046 107 0 44 chr5 42416733 42416915 -160668617 + AluSp SINE Alu 147 314 0 2206 174 18 82 chr5 42417463 42417671 -160667861 + L1MB3 LINE L1 5651 5871 -312 2153 98 24 0 chr5 42417671 42417958 -160667574 + AluSx SINE Alu 18 311 -1 2206 174 18 82 chr5 42417958 42418320 -160667212 + L1MB3 LINE L1 5871 6180 -3 2079 113 7 0 chr5 42418504 42418788 -160666744 - AluSq SINE Alu -25 288 3 1996 158 7 0 chr5 42418792 42419102 -160666430 - AluJb SINE Alu 0 312 1 2529 64 0 0 chr5 42419155 42419451 -160666081 + AluSx SINE Alu 1 296 -16 1718 156 10 10 chr5 42419577 42419865 -160665667 + AluSx SINE Alu 7 294 -18 237 65 0 0 chr5 42419907 42419938 -160665594 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2146 114 0 0 chr5 42419942 42420223 -160665309 - AluY SINE Alu -30 281 1 2418 83 3 3 chr5 42420293 42420593 -160664939 + AluSp SINE Alu 2 301 -12 1869 142 17 10 chr5 42420705 42421000 -160664532 + AluSx SINE Alu 1 297 -15 2146 125 3 3 chr5 42421170 42421475 -160664057 + AluSx SINE Alu 1 305 -7 1719 162 54 10 chr5 42421476 42421772 -160663760 + AluJb SINE Alu 1 309 -3 2285 93 3 0 chr5 42422057 42422346 -160663186 + AluSx SINE Alu 1 290 -22 1491 175 79 10 chr5 42422542 42422833 -160662699 + AluJb SINE Alu 1 311 -1 508 171 0 0 chr5 42422857 42422956 -160662576 - AluSg/x SINE Alu 0 308 210 * 533 123 0 25 chr5 42422949 42423030 -160662502 - AluJb SINE Alu -162 150 72 2171 87 7 3 chr5 42423086 42423372 -160662160 + AluSc SINE Alu 5 291 -18 543 161 125 18 chr5 42423374 42423486 -160662046 + FLAM_C SINE Alu 3 126 -17 48 60 0 0 chr5 42423486 42423569 -160661963 + AT_rich Low_complexity Low_complexity 1 83 0 1026 186 43 103 chr5 42423712 42424219 -160661313 + L1MCc LINE L1 438 985 -4923 1665 147 4 21 chr5 42424219 42424498 -160661034 + AluSx SINE Alu 39 312 0 1026 186 43 103 chr5 42424498 42424533 -160660999 + L1MCc LINE L1 985 1021 -4887 2098 105 3 17 chr5 42424546 42424840 -160660692 + AluSg SINE Alu 1 290 -20 2056 127 28 0 chr5 42424849 42425132 -160660400 + AluSx SINE Alu 1 291 -21 325 119 0 0 chr5 42425143 42425185 -160660347 + Alu SINE Alu 3 44 -257 2132 124 10 0 chr5 42425332 42425631 -160659901 + AluSx SINE Alu 1 302 -10 438 264 123 26 chr5 42425641 42425796 -160659736 + L1MCc LINE L1 1271 1493 -4935 1699 170 109 3 chr5 42426147 42426477 -160659055 + MLT1A1 LTR MaLR 1 365 0 265 315 93 9 chr5 42426489 42426597 -160658935 + L2 LINE L2 3152 3268 -4 2378 78 3 3 chr5 42426637 42426933 -160658599 - AluSp SINE Alu -17 296 1 2202 113 3 7 chr5 42427257 42427559 -160657973 - AluSx SINE Alu -11 301 1 333 241 81 0 chr5 42427985 42428072 -160657460 + MER5A DNA MER1_type 13 106 -83 2359 75 0 0 chr5 42428972 42429281 -160656251 - AluY SINE Alu 0 309 1 1065 98 18 79 chr5 42429296 42429327 -160656205 + L1MA2 LINE L1 6111 6142 -163 1996 118 14 4 chr5 42429327 42429633 -160655899 + AluSg SINE Alu 1 309 0 1065 98 18 79 chr5 42429633 42429775 -160655757 + L1MA2 LINE L1 6142 6291 -14 2204 103 0 19 chr5 42429775 42430085 -160655447 + AluSg SINE Alu 5 308 -2 1065 98 18 79 chr5 42430085 42430098 -160655434 + L1MA2 LINE L1 6291 6275 -30 369 0 0 0 chr5 42430098 42430139 -160655393 + (CA)n Simple_repeat Simple_repeat 2 42 0 1065 98 18 79 chr5 42430139 42430170 -160655362 + L1MA2 LINE L1 6274 6305 0 26 0 0 0 chr5 42430170 42430196 -160655336 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr5 42430660 42430698 -160654834 + AT_rich Low_complexity Low_complexity 1 38 0 1607 113 5 0 chr5 42430785 42431006 -160654526 - AluSg/x SINE Alu -12 298 77 2267 73 38 0 chr5 42431008 42431295 -160654237 - AluY SINE Alu -13 298 1 646 96 0 0 chr5 42431295 42431378 -160654154 - AluSc SINE Alu -225 84 2 1428 173 32 51 chr5 42431385 42431557 -160653975 - AluJb SINE Alu -6 306 132 2030 125 26 13 chr5 42431557 42431860 -160653672 - AluSx SINE Alu -5 307 1 2227 48 4 7 chr5 42431868 42432139 -160653393 - AluY SINE Alu -2 309 40 2165 112 3 0 chr5 42432139 42432426 -160653106 - AluSg SINE Alu -22 288 1 1428 173 32 51 chr5 42432426 42432555 -160652977 - AluJb SINE Alu -185 127 1 1757 148 0 44 chr5 42432555 42432853 -160652679 - AluJb SINE Alu -2 310 26 1895 137 27 3 chr5 42432883 42433176 -160652356 + AluSx SINE Alu 1 300 -12 1726 174 13 3 chr5 42433317 42433621 -160651911 + AluJo SINE Alu 1 307 -5 2205 86 10 13 chr5 42434434 42434736 -160650796 + AluSq SINE Alu 1 301 -12 225 127 28 56 chr5 42435625 42435696 -160649836 + GA-rich Low_complexity Low_complexity 5 73 0 459 231 116 0 chr5 42436873 42436994 -160648538 + MER58B DNA MER1_type 206 340 -1 1170 177 76 48 chr5 42437019 42437167 -160648365 - Charlie1 DNA MER1_type -15 2746 2604 2208 106 3 23 chr5 42437167 42437470 -160648062 + AluSg SINE Alu 1 297 -13 1170 177 76 48 chr5 42437470 42437630 -160647902 - Charlie1 DNA MER1_type -157 2604 2429 488 190 30 32 chr5 42437630 42437807 -160647725 - LTR64 LTR ERVK 0 558 346 497 237 0 0 chr5 42437814 42437907 -160647625 + AluJ/FLAM SINE Alu 3 95 -217 1067 149 48 0 chr5 42437907 42438075 -160647457 + AluJo/FRAM SINE Alu 136 311 -1 1582 189 15 30 chr5 42438075 42438403 -160647129 - LTR64 LTR ERVK -235 323 1 256 204 14 169 chr5 42438403 42438468 -160647064 - Charlie1 DNA MER1_type -341 2420 2382 2285 119 0 0 chr5 42438468 42438779 -160646753 + AluSq SINE Alu 3 313 0 256 204 14 169 chr5 42438779 42438824 -160646708 - Charlie1 DNA MER1_type -379 2382 2332 * 1580 231 59 30 chr5 42438815 42438845 -160646687 - Charlie1 DNA MER1_type -832 1929 1901 2015 124 24 3 chr5 42438845 42438990 -160646542 - AluSq SINE Alu -16 297 156 2273 104 10 10 chr5 42438990 42439299 -160646233 - AluSq SINE Alu -4 309 1 2015 124 24 3 chr5 42439299 42439444 -160646088 - AluSq SINE Alu -157 156 1 1580 231 59 30 chr5 42439444 42439630 -160645902 - Charlie1 DNA MER1_type -860 1901 1722 938 199 0 12 chr5 42439630 42439796 -160645736 + FAM SINE Alu 1 164 -11 1580 231 59 30 chr5 42439796 42440016 -160645516 - Charlie1 DNA MER1_type -1039 1722 1479 513 234 29 58 chr5 42440152 42440289 -160645243 + MER54A LTR ERVL 484 616 -285 1175 86 103 0 chr5 42440292 42440467 -160645065 - MER30 DNA MER1_type -35 195 3 1743 194 7 0 chr5 42440467 42440761 -160644771 + MER54A LTR ERVL 599 894 -7 2185 105 3 10 chr5 42440762 42441068 -160644464 + AluSp SINE Alu 1 304 -9 1565 118 3 84 chr5 42441107 42441394 -160644138 + MER75 DNA T2_type 1 264 -250 1991 138 3 3 chr5 42441633 42441769 -160643763 + AluSx SINE Alu 1 136 -176 2290 92 14 0 chr5 42441769 42442063 -160643469 + AluSx SINE Alu 1 298 -14 1991 138 3 3 chr5 42442063 42442217 -160643315 + AluSx SINE Alu 135 291 -21 1480 124 22 137 chr5 42442322 42442644 -160642888 + AluYb8 SINE Alu 1 285 -33 216 0 0 0 chr5 42442644 42442668 -160642864 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2292 94 7 10 chr5 42442671 42442979 -160642553 + AluSx SINE Alu 1 307 -5 2232 77 14 3 chr5 42442990 42443277 -160642255 + AluSx SINE Alu 20 309 -3 1107 92 104 0 chr5 42443288 42443452 -160642080 + AluSg/x SINE Alu 119 299 -11 264 246 23 154 chr5 42444119 42444424 -160641108 - L1ME LINE L1 -379 5742 5478 2386 67 0 13 chr5 42444687 42444987 -160640545 - AluY SINE Alu -15 296 1 1720 174 24 3 chr5 42444987 42445285 -160640247 - AluJb SINE Alu -6 306 3 675 186 335 13 chr5 42445420 42445656 -160639876 - MLT1E2 LTR MaLR -228 398 87 1968 145 3 0 chr5 42446117 42446421 -160639111 + AluSq SINE Alu 1 305 -8 2273 105 0 3 chr5 42446447 42446743 -160638789 - AluSg SINE Alu -15 295 1 233 0 62 0 chr5 42446743 42446775 -160638757 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2057 120 22 0 chr5 42446775 42447049 -160638483 - AluSc SINE Alu -29 280 1 2021 134 0 0 chr5 42447076 42447388 -160638144 + AluSq SINE Alu 1 312 0 301 86 35 0 chr5 42447413 42447471 -160638061 + A-rich Low_complexity Low_complexity 1 60 0 2222 101 0 7 chr5 42447611 42447907 -160637625 - AluSx SINE Alu -18 294 1 2250 82 0 14 chr5 42447936 42448227 -160637305 - AluY SINE Alu -23 288 2 531 238 165 29 chr5 42448248 42448454 -160637078 - L1MC5 LINE L1 -51 7910 7677 1602 178 0 45 chr5 42448519 42448732 -160636800 - AluJb SINE Alu -5 307 111 2543 50 27 3 chr5 42448732 42449033 -160636499 + AluY SINE Alu 1 308 -3 1602 178 0 45 chr5 42449033 42449128 -160636404 - AluJb SINE Alu -201 111 13 2353 198 166 64 chr5 42449135 42449583 -160635949 - MER21B LTR ERV1 -60 803 253 1928 150 16 13 chr5 42449583 42449889 -160635643 + AluJo SINE Alu 1 307 -5 2353 198 166 64 chr5 42449889 42450156 -160635376 - MER21B LTR ERV1 -610 253 15 2239 81 0 34 chr5 42450161 42450458 -160635074 - AluY SINE Alu -24 287 1 1626 126 4 4 chr5 42450709 42450939 -160634593 - AluSx SINE Alu -48 264 35 21 0 0 0 chr5 42450943 42450964 -160634568 + AT_rich Low_complexity Low_complexity 1 21 0 273 91 0 0 chr5 42450964 42451008 -160634524 - L1MA3 LINE L1 0 6305 6262 2223 114 0 3 chr5 42451161 42451459 -160634073 + AluSq SINE Alu 1 297 -16 22 0 0 0 chr5 42451667 42451689 -160633843 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr5 42451746 42451775 -160633757 + AT_rich Low_complexity Low_complexity 1 29 0 324 200 114 0 chr5 42452059 42452129 -160633403 + MER21B LTR ERV1 497 574 -289 2236 95 10 3 chr5 42452465 42452761 -160632771 - AluSg SINE Alu -12 298 1 2100 134 3 7 chr5 42452801 42453108 -160632424 + AluSx SINE Alu 1 306 -6 707 133 125 17 chr5 42453136 42453256 -160632276 + FLAM_C SINE Alu 6 138 -5 1996 130 7 10 chr5 42453432 42453739 -160631793 - AluSx SINE Alu -6 306 1 2329 81 0 7 chr5 42453748 42454056 -160631476 - AluY SINE Alu -4 307 2 22 0 0 0 chr5 42454530 42454552 -160630980 + AT_rich Low_complexity Low_complexity 1 22 0 518 84 0 0 chr5 42454604 42454675 -160630857 - MER41B LTR ERV1 -84 551 481 2349 77 0 3 chr5 42454686 42454983 -160630549 - AluY SINE Alu -13 298 3 2354 94 3 0 chr5 42455063 42455361 -160630171 - AluSp SINE Alu -14 299 1 25 51 0 0 chr5 42455597 42455636 -160629896 + AT_rich Low_complexity Low_complexity 1 39 0 2928 166 28 18 chr5 42455661 42456204 -160629328 - L1MB3 LINE L1 -77 6106 5559 2145 103 7 7 chr5 42456523 42456815 -160628717 - AluSx SINE Alu -6 306 15 1132 144 23 0 chr5 42456816 42456989 -160628543 - AluSg SINE Alu -133 177 1 2149 97 3 10 chr5 42457001 42457289 -160628243 - AluSg SINE Alu -23 287 2 1316 220 56 16 chr5 42457336 42457380 -160628152 - L1 LINE L1 -2919 3227 3186 2214 112 3 0 chr5 42457380 42457684 -160627848 - AluSg SINE Alu -4 306 2 1316 220 56 16 chr5 42457684 42458028 -160627504 - L1 LINE L1 -2960 3186 2818 1814 171 0 10 chr5 42458028 42458327 -160627205 - AluJb SINE Alu -16 296 1 1316 220 56 16 chr5 42458327 42458369 -160627163 - L1 LINE L1 -3328 2818 2779 1892 117 68 0 chr5 42458370 42458651 -160626881 + AluSg SINE Alu 1 300 -10 796 310 85 48 chr5 42458737 42459172 -160626360 - L2 LINE L2 -1 3312 2862 327 274 39 49 chr5 42459329 42459431 -160626101 - L2 LINE L2 -22 3291 3191 1354 87 71 0 chr5 42459663 42459847 -160625685 - MER107 DNA MER1_type 0 197 1 36 0 0 0 chr5 42460121 42460157 -160625375 + AT_rich Low_complexity Low_complexity 1 36 0 1659 191 14 0 chr5 42460162 42460444 -160625088 - AluJo SINE Alu -26 286 1 23 0 0 0 chr5 42460590 42460613 -160624919 + AT_rich Low_complexity Low_complexity 1 23 0 330 115 0 0 chr5 42460865 42460917 -160624615 + (GAA)n Simple_repeat Simple_repeat 1 52 0 1055 136 12 6 chr5 42461029 42461191 -160624341 + AluSc SINE Alu 135 297 -12 1651 155 32 7 chr5 42461207 42461485 -160624047 + AluJo SINE Alu 1 285 -27 1187 110 6 6 chr5 42461668 42461832 -160623700 + AluSp SINE Alu 137 300 -13 2242 81 20 14 chr5 42462058 42462353 -160623179 + AluSc SINE Alu 1 297 -12 2379 67 10 3 chr5 42462433 42462730 -160622802 - AluY SINE Alu -12 299 1 344 244 11 22 chr5 42462731 42462821 -160622711 - MER97a DNA MER1_type? -24 870 782 1621 133 92 19 chr5 42463205 42463342 -160622190 + AluSx SINE Alu 1 126 -186 2445 70 0 0 chr5 42463342 42463641 -160621891 + AluY SINE Alu 1 299 -12 1621 133 92 19 chr5 42463641 42463774 -160621758 + AluSx SINE Alu 126 291 -21 1679 197 114 49 chr5 42464000 42464259 -160621273 - MER97c DNA MER1_type? -520 570 329 2170 105 0 3 chr5 42464259 42464579 -160620953 - AluSx SINE Alu 0 319 1 1679 197 114 49 chr5 42464579 42464811 -160620721 - MER97c DNA MER1_type? -761 329 46 786 236 28 11 chr5 42464912 42465090 -160620442 + MLT1B LTR MaLR 210 390 0 1725 151 16 40 chr5 42465349 42465653 -160619879 - AluJo SINE Alu -15 297 1 2399 86 0 7 chr5 42465662 42465963 -160619569 - AluSx SINE Alu -13 299 1 711 200 31 8 chr5 42465972 42466102 -160619430 - AluJo SINE Alu -178 134 2 3530 166 50 15 chr5 42466140 42466639 -160618893 - L1MA5 LINE L1 -2 6298 5767 315 0 0 0 chr5 42466639 42466674 -160618858 + (TG)n Simple_repeat Simple_repeat 2 36 0 3530 166 50 15 chr5 42466674 42466847 -160618685 - L1MA5 LINE L1 -533 5767 5602 1762 192 41 28 chr5 42466854 42467244 -160618288 - L1MA4 LINE L1 -11 6289 5895 279 133 0 0 chr5 42467244 42467289 -160618243 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 2110 129 0 3 chr5 42467290 42467593 -160617939 - AluSx SINE Alu -10 302 1 197 371 26 17 chr5 42467691 42467807 -160617725 + L2 LINE L2 2601 2717 -597 1446 181 16 80 chr5 42468072 42468386 -160617146 - AluJo SINE Alu -18 294 1 236 259 42 121 chr5 42468391 42468557 -160616975 - MER5B DNA MER1_type -1 177 25 27 29 0 0 chr5 42469043 42469077 -160616455 + AT_rich Low_complexity Low_complexity 1 34 0 462 259 30 15 chr5 42469132 42469263 -160616269 + L1ME4a LINE L1 5588 5720 -401 332 321 43 14 chr5 42469430 42469570 -160615962 + L1ME4a LINE L1 5711 5854 -267 1181 141 0 0 chr5 42469682 42469859 -160615673 - AluSp SINE Alu 0 313 137 1735 189 14 3 chr5 42470109 42470400 -160615132 + AluJb SINE Alu 1 294 -18 467 260 100 35 chr5 42470524 42470724 -160614808 + L2 LINE L2 2440 2652 -662 765 230 113 25 chr5 42470780 42471019 -160614513 + MIR SINE MIR 2 261 -1 541 106 35 47 chr5 42471423 42471508 -160614024 + FRAM SINE Alu 67 150 -26 1629 160 20 33 chr5 42471582 42471882 -160613650 + AluSx SINE Alu 1 296 -16 800 156 0 8 chr5 42472041 42472163 -160613369 - FLAM_C SINE Alu -11 132 12 707 273 64 26 chr5 42472267 42472531 -160613001 - MLT1J LTR MaLR 0 511 238 2077 122 0 20 chr5 42472535 42472838 -160612694 + AluSx SINE Alu 1 297 -15 2371 87 3 0 chr5 42473285 42473584 -160611948 - AluSq SINE Alu -13 300 1 2210 103 0 3 chr5 42473851 42474151 -160611381 - AluSq SINE Alu -14 299 1 1192 171 108 87 chr5 42474397 42474684 -160610848 - AluJo SINE Alu -9 293 1 713 220 7 7 chr5 42475465 42475606 -160609926 - FLAM_C SINE Alu -2 141 1 601 243 26 7 chr5 42475607 42475759 -160609773 - L1ME2 LINE L1 -10 6154 6000 2007 142 0 14 chr5 42475789 42476084 -160609448 + AluSx SINE Alu 1 291 -21 36 62 0 0 chr5 42476247 42476311 -160609221 + AT_rich Low_complexity Low_complexity 1 64 0 2219 96 0 3 chr5 42476450 42476759 -160608773 + AluSx SINE Alu 1 308 0 2265 101 0 3 chr5 42477786 42478083 -160607449 + AluSc SINE Alu 1 296 -13 2366 95 7 0 chr5 42478210 42478514 -160607018 + AluSp SINE Alu 2 307 -6 1127 282 126 18 chr5 42478515 42479042 -160606490 + L2 LINE L2 2707 3312 -1 6388 57 32 50 chr5 42479127 42480912 -160604620 - SVA Other Other -589 1386 1 1950 139 24 0 chr5 42480927 42481221 -160604311 - AluSx SINE Alu -11 301 1 209 224 82 0 chr5 42481385 42481434 -160604098 - L2 LINE L2 -5 3267 3215 1990 158 0 3 chr5 42481567 42481871 -160603661 - AluJb SINE Alu -9 303 1 1786 159 0 33 chr5 42481887 42482189 -160603343 - AluJo SINE Alu -16 296 5 207 0 0 0 chr5 42482553 42482576 -160602956 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 25 31 0 0 chr5 42482598 42482630 -160602902 + AT_rich Low_complexity Low_complexity 1 32 0 1811 46 14 5 chr5 42482677 42482893 -160602639 - AluY SINE Alu -23 288 71 1993 138 6 16 chr5 42483099 42483410 -160602122 - AluSx SINE Alu -4 308 1 2260 95 3 0 chr5 42483555 42483850 -160601682 - AluSg SINE Alu -14 296 1 2088 115 21 3 chr5 42483878 42484166 -160601366 + AluSx SINE Alu 1 293 -19 817 168 0 0 chr5 42484260 42484385 -160601147 - FLAM_C SINE Alu -8 125 1 795 171 29 14 chr5 42484428 42484568 -160600964 + FLAM_C SINE Alu 2 143 0 1252 213 37 0 chr5 42484778 42485022 -160600510 - AluJo SINE Alu -4 308 56 1766 112 50 8 chr5 42485023 42485282 -160600250 + AluSg SINE Alu 35 304 -6 732 284 49 16 chr5 42485324 42485567 -160599965 - MIR SINE MIR -9 253 3 1813 148 3 56 chr5 42486629 42486805 -160598727 - AluJb SINE Alu -5 307 154 2155 118 0 31 chr5 42486805 42487127 -160598405 - AluSx SINE Alu 0 312 1 1813 148 3 56 chr5 42487127 42487274 -160598258 - AluJb SINE Alu -158 154 1 259 356 8 25 chr5 42487522 42487640 -160597892 - MIR SINE MIR -55 153 38 263 271 0 0 chr5 42487693 42487763 -160597769 + A-rich Low_complexity Low_complexity 1 70 0 2089 123 7 7 chr5 42487899 42488208 -160597324 - AluSg SINE Alu -1 309 1 2322 100 0 0 chr5 42488222 42488523 -160597009 + AluSx SINE Alu 10 310 -2 23 33 0 0 chr5 42488526 42488556 -160596976 + AT_rich Low_complexity Low_complexity 1 30 0 1840 170 3 22 chr5 42488744 42489055 -160596477 - AluJo SINE Alu -7 305 1 1426 259 201 42 chr5 42489168 42489308 -160596224 - L2 LINE L2 -10 3303 3187 1816 167 0 22 chr5 42489308 42489620 -160595912 + AluJb SINE Alu 1 305 -7 1426 259 201 42 chr5 42489620 42490612 -160594920 - L2 LINE L2 -126 3187 1939 415 284 90 7 chr5 42490725 42491023 -160594509 - MLT1H LTR MaLR 0 549 214 1500 181 79 0 chr5 42491139 42491416 -160594116 - AluJb SINE Alu -13 299 1 2493 71 0 0 chr5 42491454 42491763 -160593769 + AluY SINE Alu 1 309 -2 240 259 94 0 chr5 42491767 42491852 -160593680 - L1MCa LINE L1 -4339 2087 1995 1902 97 62 38 chr5 42491940 42492228 -160593304 + AluSq SINE Alu 1 295 -18 532 307 26 0 chr5 42492230 42492383 -160593149 + MLT1J LTR MaLR 106 262 -249 2970 220 72 43 chr5 42492614 42493358 -160592174 - L1ME1 LINE L1 -4 6162 5441 565 246 8 8 chr5 42493358 42493480 -160592052 - FLAM_A SINE Alu -11 122 1 2970 220 72 43 chr5 42493480 42494458 -160591074 - L1ME1 LINE L1 -725 5441 4381 2339 104 3 0 chr5 42494896 42495205 -160590327 - AluSx SINE Alu -1 311 2 1766 150 0 0 chr5 42495233 42495500 -160590032 - AluSx SINE Alu -45 267 1 264 297 158 0 chr5 42495524 42495625 -160589907 + L2 LINE L2 3189 3305 -8 4984 155 17 11 chr5 42495897 42496737 -160588795 - L1MB2 LINE L1 -4 6167 5323 2298 69 0 33 chr5 42496737 42497042 -160588490 - AluSc SINE Alu -14 295 1 975 93 6 80 chr5 42497047 42497209 -160588323 - AluY SINE Alu -161 150 1 517 224 17 58 chr5 42497210 42497384 -160588148 - L1MB2 LINE L1 -816 5330 5164 2006 149 17 0 chr5 42497412 42497707 -160587825 - AluSx SINE Alu -12 300 1 437 200 19 48 chr5 42497832 42497937 -160587595 + MER2 DNA MER2_type 22 123 -222 1869 145 73 28 chr5 42498333 42498691 -160586841 - THE1C LTR MaLR -1 374 1 297 328 17 34 chr5 42500405 42500524 -160585008 - L2 LINE L2 -188 3084 2968 386 248 172 35 chr5 42500580 42500778 -160584754 - MIR SINE MIR -1 261 37 336 269 13 0 chr5 42500910 42500988 -160584544 - L2 LINE L2 -1 3271 3193 293 209 0 15 chr5 42502985 42503052 -160582480 + L1MEc LINE L1 821 886 -5510 774 155 89 78 chr5 42503052 42503257 -160582275 + Charlie1 DNA MER1_type 2488 2699 -62 2197 85 0 3 chr5 42503257 42503564 -160581968 - AluY SINE Alu 0 306 1 774 155 89 78 chr5 42503564 42503628 -160581904 + Charlie1 DNA MER1_type 2699 2761 0 281 281 119 24 chr5 42553838 42554048 -160531484 - MSTA LTR MaLR -180 248 19 1293 186 13 108 chr5 42554184 42554331 -160531201 - L1 LINE L1 -2429 3717 3558 2703 109 0 0 chr5 42554331 42554716 -160530816 - L1PA12 LINE L1 -18 6150 5766 1293 186 13 108 chr5 42554716 42555030 -160530502 - L1 LINE L1 -2588 3558 3300 734 242 21 52 chr5 42555074 42555401 -160530131 - L1MB2 LINE L1 -1083 5063 4747 215 244 39 26 chr5 42558150 42558228 -160527304 + CT-rich Low_complexity Low_complexity 2 80 0 588 103 22 71 chr5 42558230 42558414 -160527118 + (TTCCC)n Simple_repeat Simple_repeat 2 176 0 24 0 0 0 chr5 42558532 42558556 -160526976 + AT_rich Low_complexity Low_complexity 1 24 0 2056 160 0 0 chr5 42558673 42558985 -160526547 - AluSx SINE Alu 0 312 1 1562 285 76 16 chr5 42559070 42559624 -160525908 + L2 LINE L2 1924 2510 -804 1782 172 28 23 chr5 42559645 42559979 -160525553 - L1MC/D LINE L1 -2066 5719 5381 2231 121 0 0 chr5 42559979 42560277 -160525255 - AluSx SINE Alu -14 298 1 1782 172 28 23 chr5 42560277 42560332 -160525200 - L1MC/D LINE L1 -2404 5381 5328 24 0 0 0 chr5 42560386 42560410 -160525122 + AT_rich Low_complexity Low_complexity 1 24 0 378 0 0 0 chr5 42560451 42560493 -160525039 + (TC)n Simple_repeat Simple_repeat 1 42 0 1220 150 68 5 chr5 42560497 42560704 -160524828 - AluJb SINE Alu -80 232 13 269 212 121 20 chr5 42560704 42560803 -160524729 - L1MC/D LINE L1 -932 5214 5106 5529 170 92 19 chr5 42560819 42561580 -160523952 - L1PB3 LINE L1 -7 6147 5443 2371 81 0 40 chr5 42561580 42561902 -160523630 - AluSq SINE Alu -4 309 1 5529 170 92 19 chr5 42561902 42562266 -160523266 - L1PB3 LINE L1 -711 5443 5107 1202 129 144 0 chr5 42562266 42562467 -160523065 + MER30 DNA MER1_type 1 230 0 5529 170 92 19 chr5 42562467 42563469 -160522063 - L1PB3 LINE L1 -1047 5107 3832 2099 180 70 5 chr5 42563469 42563869 -160521663 - MSTA LTR MaLR -2 426 1 5529 170 92 19 chr5 42563869 42563957 -160521575 - L1PB3 LINE L1 -2322 3832 3752 2519 251 106 43 chr5 42564533 42564659 -160520873 - L1MB2 LINE L1 -1419 4727 4610 1704 180 29 3 chr5 42564659 42565003 -160520529 - L1MA4A LINE L1 -7 6296 5944 2519 251 106 43 chr5 42565003 42565559 -160519973 - L1MB2 LINE L1 -1536 4610 4090 1429 169 130 32 chr5 42565559 42565897 -160519635 + MLT1A2 LTR MaLR 4 374 0 2519 251 106 43 chr5 42565897 42566592 -160518940 - L1MB2 LINE L1 -2056 4090 3217 673 198 209 4 chr5 42566606 42566869 -160518663 - L1MB2 LINE L1 -3050 3096 2780 481 177 0 0 chr5 42566879 42566958 -160518574 - AluJ/FLAM SINE Alu -233 79 1 352 218 45 18 chr5 42566964 42567074 -160518458 - L1MB2 LINE L1 -3357 2789 2677 186 342 40 53 chr5 42567074 42567226 -160518306 + L2 LINE L2 2552 2701 -613 1000 193 5 25 chr5 42567295 42567492 -160518040 + AluJo SINE Alu 85 277 -35 254 248 26 43 chr5 42567541 42567658 -160517874 - L1MC4 LINE L1 -2 8040 7926 214 184 0 0 chr5 42567742 42567780 -160517752 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 4451 235 88 16 chr5 42567780 42567901 -160517631 - L1MC4 LINE L1 -128 7914 7803 736 188 0 8 chr5 42567901 42568029 -160517503 - FLAM_A SINE Alu -5 128 2 4451 235 88 16 chr5 42568029 42569369 -160516163 - L1MC4 LINE L1 -239 7803 6348 826 255 89 64 chr5 42569381 42569660 -160515872 - MLT1C LTR MaLR 0 467 196 1928 151 14 0 chr5 42569660 42569951 -160515581 - AluJb SINE Alu -17 295 1 826 255 89 64 chr5 42569951 42570016 -160515516 - MLT1C LTR MaLR -271 196 134 1854 163 0 10 chr5 42570016 42570317 -160515215 - AluJb SINE Alu -14 298 1 826 255 89 64 chr5 42570317 42570422 -160515110 - MLT1C LTR MaLR -333 134 6 409 221 107 0 chr5 42570466 42570597 -160514935 - L1MC4a LINE L1 -1541 6267 6123 427 358 40 5 chr5 42570684 42570955 -160514577 - L2 LINE L2 -244 3069 2791 3345 62 25 0 chr5 42570955 42571388 -160514144 - MLT2A1 LTR ERVL 0 444 1 1386 235 3 20 chr5 42571453 42571747 -160513785 - AluJo SINE Alu -18 294 6 237 159 0 0 chr5 42571769 42571813 -160513719 + (TA)n Simple_repeat Simple_repeat 1 44 0 1908 107 17 14 chr5 42571813 42572104 -160513428 - L1PA11 LINE L1 -2 6172 5881 514 279 96 122 chr5 42572107 42572171 -160513361 - L2 LINE L2 -605 2709 2645 2159 122 3 3 chr5 42572171 42572474 -160513058 + AluJb SINE Alu 5 307 -5 514 279 96 122 chr5 42572474 42572868 -160512664 - L2 LINE L2 -669 2645 2263 183 273 15 76 chr5 42573687 42573753 -160511779 - L2 LINE L2 -21 3251 3190 182 36 0 36 chr5 42574138 42574158 -160511374 + (TA)n Simple_repeat Simple_repeat 2 22 -6 2200 118 3 3 chr5 42574158 42574454 -160511078 - AluSx SINE Alu -16 296 1 182 36 0 36 chr5 42574454 42574461 -160511071 + (TA)n Simple_repeat Simple_repeat 22 28 0 2304 111 3 0 chr5 42574802 42575099 -160510433 - AluSq SINE Alu -15 298 1 973 95 82 0 chr5 42575113 42575271 -160510261 - L1MA2 LINE L1 0 6304 6134 246 70 70 0 chr5 42575276 42575333 -160510199 + (TTATA)n Simple_repeat Simple_repeat 2 62 0 2066 158 0 0 chr5 42575336 42575647 -160509885 - AluSq SINE Alu -2 311 1 2714 133 9 4 chr5 42575647 42576113 -160509419 - L1MA1 LINE L1 -156 6146 5679 6011 98 37 29 chr5 42576114 42577053 -160508479 - SVA Other Other 0 1386 440 437 242 39 55 chr5 42577268 42577396 -160508136 + MIR3 SINE MIR 68 193 -15 2510 97 27 16 chr5 42577669 42578040 -160507492 + THE1C LTR MaLR 1 375 0 3592 185 102 13 chr5 42578066 42578969 -160506563 + L1MC4a LINE L1 6824 7806 -2 1944 104 63 0 chr5 42578977 42579297 -160506235 + AluSx SINE Alu 1 337 0 389 306 122 36 chr5 42579707 42579903 -160505629 + LTR67 LTR ERVL 109 321 -236 495 245 179 66 chr5 42580234 42580446 -160505086 + MIR SINE MIR 2 237 -25 234 0 0 0 chr5 42581437 42581463 -160504069 + (TTG)n Simple_repeat Simple_repeat 2 27 0 829 293 70 4 chr5 42581763 42582005 -160503527 - MIR SINE MIR 0 262 5 22 0 0 0 chr5 42582061 42582083 -160503449 + AT_rich Low_complexity Low_complexity 1 22 0 1621 145 40 25 chr5 42583047 42583323 -160502209 - AluSx SINE Alu -32 280 1 2303 118 0 0 chr5 42583330 42583634 -160501898 - AluSx SINE Alu -8 304 1 1066 97 13 0 chr5 42584320 42584475 -160501057 - L1MA3 LINE L1 0 7724 7568 14622 152 28 18 chr5 42584481 42589782 -160495750 - L1MA3 LINE L1 -717 7007 1652 835 159 111 53 chr5 42589782 42589989 -160495543 - THE1B LTR MaLR -145 219 1 200 220 68 51 chr5 42590177 42590236 -160495296 + L2 LINE L2 3199 3258 -55 205 253 33 113 chr5 42591467 42591617 -160493915 + MIR SINE MIR 84 221 -41 29890 98 9 29 chr5 42592078 42598567 -160486965 - L1PA7 LINE L1 -2 6467 1 197 352 125 16 chr5 42598861 42598989 -160486543 + L2 LINE L2 2799 2940 -374 1469 186 89 24 chr5 42598990 42599130 -160486402 - Tigger2a DNA MER2_type -2314 394 265 229 48 71 0 chr5 42599130 42599172 -160486360 + (TAAAG)n Simple_repeat Simple_repeat 3 47 0 1469 186 89 24 chr5 42599172 42599401 -160486131 - Tigger2a DNA MER2_type -2443 265 1 437 325 26 21 chr5 42599532 42599723 -160485809 + L2 LINE L2 2891 3082 -190 1943 216 79 65 chr5 42600506 42600677 -160484855 - L1M4 LINE L1 -2970 3176 3009 1497 181 53 58 chr5 42600677 42601053 -160484479 - MLT1A2 LTR MaLR 0 374 1 1943 216 79 65 chr5 42601053 42601876 -160483656 - L1M4 LINE L1 -3137 3009 2168 365 237 114 23 chr5 42601899 42601910 -160483622 - MER3 DNA MER1_type -30 179 170 1294 196 92 6 chr5 42601910 42602227 -160483305 - MER2 DNA MER2_type 0 344 1 365 237 114 23 chr5 42602227 42602346 -160483186 - MER3 DNA MER1_type -39 170 37 2652 160 41 105 chr5 42602574 42603280 -160482252 - LTR8 LTR ERV1 -30 661 1 270 203 101 0 chr5 42603706 42603775 -160481757 - Charlie8 DNA MER1_type -2217 200 125 280 311 87 0 chr5 42604051 42604154 -160481378 + L2 LINE L2 3190 3301 -12 408 356 40 28 chr5 42605229 42605482 -160480050 + L2 LINE L2 2600 2855 -459 353 257 83 42 chr5 42605777 42605921 -160479611 + L2 LINE L2 3123 3272 0 941 274 24 8 chr5 42607864 42608119 -160477413 + MIR SINE MIR 4 262 0 282 251 52 11 chr5 42608373 42608480 -160477052 + MIR SINE MIR 94 203 -59 1024 206 5 15 chr5 42608684 42608883 -160476649 + MER58A DNA MER1_type 24 220 -4 234 0 0 0 chr5 42608956 42608982 -160476550 + (A)n Simple_repeat Simple_repeat 1 26 0 305 170 134 98 chr5 42608984 42609096 -160476436 + MER103 DNA DNA 2 117 -49 237 83 0 0 chr5 42609169 42609205 -160476327 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 190 286 36 0 chr5 42610142 42610198 -160475334 + L2 LINE L2 3211 3268 -4 200 206 0 0 chr5 42610444 42610478 -160475054 + polypurine Low_complexity Low_complexity 3 36 0 23 33 0 0 chr5 42610495 42610525 -160475007 + AT_rich Low_complexity Low_complexity 1 30 0 653 146 0 9 chr5 42610527 42610637 -160474895 - FRAM SINE Alu -16 160 52 691 229 29 0 chr5 42610706 42610881 -160474651 - LTR16B LTR ERVL 0 464 285 2060 186 16 21 chr5 42610881 42611306 -160474226 + L1MB8 LINE L1 5744 6166 -12 418 83 56 0 chr5 42611510 42611582 -160473950 - SVA Other Other -877 509 434 1344 124 0 0 chr5 42611583 42611777 -160473755 - L1M1 LINE L1 -612 5692 5499 25 31 0 0 chr5 42612238 42612270 -160473262 + AT_rich Low_complexity Low_complexity 1 32 0 246 352 55 10 chr5 42612406 42612716 -160472816 + L1M4 LINE L1 3762 4085 -2061 22 35 0 0 chr5 42613155 42613184 -160472348 + AT_rich Low_complexity Low_complexity 1 29 0 5026 107 30 16 chr5 42613188 42613547 -160471985 - L1PB1 LINE L1 -1 6866 6513 354 23 0 0 chr5 42613547 42613590 -160471942 + (CA)n Simple_repeat Simple_repeat 2 44 0 5026 107 30 16 chr5 42613590 42614032 -160471500 - L1PB1 LINE L1 -354 6513 6054 2160 132 3 0 chr5 42614034 42614338 -160471194 + AluY SINE Alu 1 305 -6 41618 62 3 1 chr5 42614348 42620482 -160465050 + L1PA5 LINE L1 11 6150 -4 12878 172 58 41 chr5 42620482 42625158 -160460374 - L1PB1 LINE L1 -804 6058 1464 749 149 33 0 chr5 42625158 42625279 -160460253 + AluSq/x SINE Alu 1 125 -188 12878 172 58 41 chr5 42625279 42625302 -160460230 - L1PB1 LINE L1 -5398 1464 1443 405 0 0 0 chr5 42625302 42625347 -160460185 + (CCA)n Simple_repeat Simple_repeat 3 47 0 12878 172 58 41 chr5 42625347 42625811 -160459721 - L1PB1 LINE L1 -5419 1443 625 539 198 9 0 chr5 42625803 42625914 -160459618 - L1PB1 LINE L1 -6663 200 89 * 575 131 0 0 chr5 42625909 42625993 -160459539 + L1PBa LINE L1 1391 1474 -5389 521 134 0 0 chr5 42626020 42626102 -160459430 - L1PB1 LINE L1 -6779 84 3 2005 93 68 4 chr5 42626344 42626623 -160458909 - AluSx SINE Alu -15 297 1 514 291 80 99 chr5 42626872 42627284 -160458248 - L2 LINE L2 -91 3222 2819 33 0 0 0 chr5 42627378 42627411 -160458121 + AT_rich Low_complexity Low_complexity 1 33 0 376 241 99 94 chr5 42627527 42627739 -160457793 - MIR SINE MIR -1 261 49 872 164 184 10 chr5 42628249 42628450 -160457082 - MER46A DNA MER2_type 0 236 1 298 280 74 51 chr5 42628459 42628809 -160456723 - L1M4 LINE L1 -2192 3954 3597 1626 150 67 35 chr5 42631147 42631461 -160454071 + MLT1B LTR MaLR 65 388 -2 2293 96 0 3 chr5 42632229 42632530 -160453002 - AluSc SINE Alu -9 300 1 21 82 0 0 chr5 42632730 42632779 -160452753 + AT_rich Low_complexity Low_complexity 1 49 0 2193 101 0 19 chr5 42634158 42634474 -160451058 - AluSg SINE Alu 0 310 1 1440 258 109 34 chr5 42634718 42635221 -160450311 + MLT1H LTR MaLR 9 549 0 2074 115 0 14 chr5 42635667 42635963 -160449569 - AluSx SINE Alu -18 294 3 24 0 0 0 chr5 42636371 42636395 -160449137 + AT_rich Low_complexity Low_complexity 1 24 0 202 319 231 0 chr5 42636447 42636629 -160448903 + MIR SINE MIR 4 227 -35 23 33 0 0 chr5 42637308 42637338 -160448194 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr5 42637390 42637415 -160448117 + AT_rich Low_complexity Low_complexity 1 25 0 2023 113 40 7 chr5 42637416 42637716 -160447816 - AluSx SINE Alu -2 310 1 2199 103 7 0 chr5 42638532 42638824 -160446708 + AluSx SINE Alu 3 296 -16 8414 136 9 13 chr5 42639390 42641751 -160443781 - L1MA2 LINE L1 0 7723 5368 1698 190 3 10 chr5 42641751 42642056 -160443476 - AluSx SINE Alu -7 305 3 8414 136 9 13 chr5 42642056 42642152 -160443380 - L1MA2 LINE L1 -2355 5368 5273 1281 244 0 0 chr5 42642151 42642434 -160443098 - L1MA2 LINE L1 -3282 4283 4001 * 2626 135 39 36 chr5 42642438 42642916 -160442616 - L1MA2 LINE L1 -3806 3759 3284 2017 98 3 52 chr5 42642916 42643241 -160442291 + AluSp SINE Alu 1 309 -4 2626 135 39 36 chr5 42643241 42643345 -160442187 - L1MA2 LINE L1 -4281 3284 3171 2162 119 3 3 chr5 42643345 42643640 -160441892 + AluSg SINE Alu 1 295 -15 2626 135 39 36 chr5 42643640 42643666 -160441866 - L1MA2 LINE L1 -4394 3171 3147 2293 102 3 0 chr5 42643666 42643969 -160441563 - AluSx SINE Alu -8 304 1 264 299 112 0 chr5 42644003 42644110 -160441422 + MIR SINE MIR 131 249 -13 272 322 44 0 chr5 42644214 42644304 -160441228 + MIR3 SINE MIR 67 160 -48 251 263 75 12 chr5 42645138 42645218 -160440314 - MIR SINE MIR -88 120 36 365 241 161 0 chr5 42645361 42645473 -160440059 - MER112 DNA MER1_type -66 194 65 961 229 126 0 chr5 42645627 42645858 -160439674 + MIR SINE MIR 3 262 0 203 340 57 28 chr5 42646311 42646417 -160439115 - L2 LINE L2 -209 3063 2955 411 137 0 0 chr5 42646533 42646606 -160438926 + (CA)n Simple_repeat Simple_repeat 2 74 0 936 195 6 0 chr5 42646606 42646765 -160438767 - FAM SINE Alu -11 164 5 2104 127 0 0 chr5 42647606 42647918 -160437614 - AluSx SINE Alu 0 312 1 21 36 0 0 chr5 42649119 42649147 -160436385 + AT_rich Low_complexity Low_complexity 1 28 0 281 200 59 47 chr5 42649336 42649421 -160436111 - MIR SINE MIR -2 260 175 31 0 0 0 chr5 42649728 42649759 -160435773 + AT_rich Low_complexity Low_complexity 1 31 0 1608 183 7 33 chr5 42650225 42650525 -160435007 - AluJb SINE Alu -20 292 1 2050 141 0 6 chr5 42650819 42651131 -160434401 - AluSg SINE Alu 0 310 1 240 363 0 10 chr5 42651241 42651343 -160434189 + CT-rich Low_complexity Low_complexity 4 104 0 2258 104 0 0 chr5 42651464 42651762 -160433770 + AluSq SINE Alu 1 298 -15 897 177 6 13 chr5 42652710 42652868 -160432664 - FRAM SINE Alu -11 165 9 2041 139 7 7 chr5 42653976 42654279 -160431253 + AluSx SINE Alu 1 303 -9 6652 66 9 41 chr5 42654347 42655328 -160430204 - SVA Other Other -4 1382 433 5922 64 20 15 chr5 42655345 42656380 -160429152 - SVA Other Other -520 866 1 203 29 88 0 chr5 42656380 42656414 -160429118 + GA-rich Low_complexity Low_complexity 5 41 0 1138 151 34 5 chr5 42657754 42657960 -160427572 - L1MB7 LINE L1 -10 6174 5963 1077 229 90 86 chr5 42660530 42661076 -160424456 + MLT1H LTR MaLR 2 549 0 270 349 154 38 chr5 42661474 42661818 -160423714 - L2 LINE L2 -84 3188 2805 1308 336 92 11 chr5 42661835 42662555 -160422977 - L2 LINE L2 -629 2685 1908 276 294 71 116 chr5 42662562 42662916 -160422616 + L2 LINE L2 2925 3262 -10 565 266 7 0 chr5 42664246 42664400 -160421132 - L1PB4 LINE L1 -2 6154 6000 293 330 165 37 chr5 42664403 42664876 -160420656 + L2 LINE L2 2471 3026 -246 1028 289 53 44 chr5 42665010 42665183 -160420349 + L2 LINE L2 1570 1740 -1574 2263 36 0 0 chr5 42665183 42665458 -160420074 - L1PA4 LINE L1 -1 6154 5880 1028 289 53 44 chr5 42665458 42665738 -160419794 + L2 LINE L2 1740 2027 -1287 604 289 98 39 chr5 42665783 42666139 -160419393 - LTR16B LTR ERVL -51 413 37 1130 329 72 43 chr5 42666209 42666830 -160418702 + L2 LINE L2 2030 2668 -646 641 247 0 39 chr5 42666800 42666954 -160418578 + L2 LINE L2 3165 3312 -1 * 368 228 0 43 chr5 42667017 42667109 -160418423 + MER21B LTR ERV1 1 88 -775 2395 223 121 15 chr5 42667125 42667811 -160417721 + MER21B LTR ERV1 48 806 -57 532 118 9 27 chr5 42667830 42667940 -160417592 + (TTCC)n Simple_repeat Simple_repeat 1 108 0 317 322 203 10 chr5 42667944 42668239 -160417293 + L2 LINE L2 2722 3067 -246 22 35 0 0 chr5 42668631 42668660 -160416872 + AT_rich Low_complexity Low_complexity 1 29 0 220 317 37 12 chr5 42668858 42668940 -160416592 - L2 LINE L2 -4 3268 3185 1242 166 32 14 chr5 42669058 42669275 -160416257 + AluJo SINE Alu 60 280 -32 236 306 116 16 chr5 42669329 42669450 -160416082 - L2 LINE L2 -243 3070 2938 362 313 68 41 chr5 42669451 42669745 -160415787 - L2 LINE L2 -821 2493 2192 188 365 0 0 chr5 42670504 42670556 -160414976 - L2 LINE L2 -92 3180 3129 335 336 16 8 chr5 42670890 42671012 -160414520 + L2 LINE L2 3149 3271 -1 2538 76 0 0 chr5 42671106 42671409 -160414123 + AluSc SINE Alu 1 303 -6 634 267 169 4 chr5 42673081 42673306 -160412226 - MIR SINE MIR 0 262 1 650 261 121 5 chr5 42674312 42674527 -160411005 + MIR SINE MIR 13 252 -10 2270 88 17 0 chr5 42674948 42675244 -160410288 + AluY SINE Alu 1 301 -10 400 261 155 14 chr5 42675895 42676037 -160409495 + MIR SINE MIR 100 261 -1 2243 110 0 3 chr5 42676801 42677093 -160408439 - AluSg SINE Alu -19 291 1 307 285 88 82 chr5 42678015 42678214 -160407318 + L2 LINE L2 1795 1998 -1316 1995 41 0 4 chr5 42678214 42678459 -160407073 - L1PA7 LINE L1 -2 6152 5909 307 285 88 82 chr5 42678459 42678635 -160406897 + L2 LINE L2 1998 2172 -1142 289 309 139 62 chr5 42678831 42679155 -160406377 + L2 LINE L2 2554 2902 -412 205 352 0 14 chr5 42679433 42679504 -160406028 + L2 LINE L2 3236 3305 -8 852 80 9 0 chr5 42679613 42679725 -160405807 - AluY SINE Alu -32 279 167 251 309 151 60 chr5 42679828 42680126 -160405406 + L2 LINE L2 2578 2902 -412 205 352 0 14 chr5 42680404 42680475 -160405057 + L2 LINE L2 3236 3305 -8 1367 110 19 10 chr5 42680550 42680759 -160404773 - AluSg/x SINE Alu -9 301 91 200 373 0 0 chr5 42681251 42681326 -160404206 + C-rich Low_complexity Low_complexity 1 75 0 1706 188 3 13 chr5 42681348 42681521 -160404011 - AluJo SINE Alu -11 301 131 2272 112 0 10 chr5 42681521 42681834 -160403698 - AluSg SINE Alu 0 310 1 1706 188 3 13 chr5 42681834 42681964 -160403568 - AluJo SINE Alu -181 131 1 378 129 0 0 chr5 42681993 42682055 -160403477 + (CA)n Simple_repeat Simple_repeat 2 63 0 278 222 44 0 chr5 42682056 42682146 -160403386 + (TA)n Simple_repeat Simple_repeat 2 95 0 1535 139 7 78 chr5 42682370 42682664 -160402868 - AluSx SINE Alu -34 278 6 831 248 74 4 chr5 42682948 42683206 -160402326 - L1MB7 LINE L1 -67 6117 5842 869 254 100 31 chr5 42683211 42683570 -160401962 + MLT1D LTR MaLR 5 388 -117 1914 259 64 28 chr5 42683655 42683821 -160401711 + L1M4 LINE L1 3074 3233 -2913 1818 137 12 0 chr5 42683821 42684076 -160401456 + AluSx SINE Alu 1 258 -54 1914 259 64 28 chr5 42684076 42684827 -160400705 + L1M4 LINE L1 3233 4024 -2122 2761 139 32 4 chr5 42684830 42685326 -160400206 - Tigger4(Zombi) DNA MER2_type 0 2731 2222 489 162 368 0 chr5 42685324 42685441 -160400091 - Tigger4(Zombi) DNA MER2_type -2571 160 1 * 1821 239 56 41 chr5 42685447 42685651 -160399881 + L1M4 LINE L1 4035 4235 -1911 1519 203 15 7 chr5 42685651 42685922 -160399610 + AluJo SINE Alu 10 282 -30 9913 55 11 2 chr5 42685932 42687977 -160397555 - L1PA6 LINE L1 -7 6147 4085 1821 239 56 41 chr5 42687977 42688443 -160397089 + L1M4 LINE L1 4243 4726 -1420 296 195 54 154 chr5 42688479 42688628 -160396904 + L2 LINE L2 3179 3312 -1 649 261 144 46 chr5 42689156 42689462 -160396070 + MLT1J LTR MaLR 105 440 -71 2471 224 48 25 chr5 42689590 42690355 -160395177 - L1ME1 LINE L1 -127 6039 5257 1113 162 44 59 chr5 42690356 42690628 -160394904 + MSTB1 LTR MaLR 165 432 0 519 195 114 67 chr5 42690657 42690867 -160394665 - L1ME1 LINE L1 -1048 5098 4879 385 229 49 25 chr5 42691107 42691229 -160394303 + MIR SINE MIR 125 249 -13 2180 188 36 50 chr5 42692248 42692377 -160393155 + L1M4 LINE L1 4829 4958 -1226 2145 123 3 3 chr5 42692377 42692678 -160392854 + AluSx SINE Alu 1 301 -11 2180 188 36 50 chr5 42692678 42693012 -160392520 + L1M4 LINE L1 4958 5288 -896 2526 63 0 0 chr5 42693012 42693314 -160392218 + AluY SINE Alu 1 302 -9 2180 188 36 50 chr5 42693314 42693629 -160391903 + L1M4 LINE L1 5288 5606 -578 * 3739 169 29 33 chr5 42693627 42694497 -160391035 - L1 LINE L1 -1839 4307 3442 3389 159 77 34 chr5 42694498 42694521 -160391011 + L1 LINE L1 4337 4358 -1788 3705 61 2 4 chr5 42694521 42694999 -160390533 + L1PA7 LINE L1 5677 6153 -1 3389 159 77 34 chr5 42694999 42695093 -160390439 + L1 LINE L1 4358 4447 -1699 2114 113 6 58 chr5 42695093 42695422 -160390110 + AluSx SINE Alu 1 312 0 3389 159 77 34 chr5 42695422 42695463 -160390069 + L1 LINE L1 4447 4485 -1661 2409 83 7 0 chr5 42695463 42695764 -160389768 + AluSg SINE Alu 1 303 -7 3389 159 77 34 chr5 42695764 42696400 -160389132 + L1 LINE L1 4485 5167 -979 1232 273 92 22 chr5 42696400 42697130 -160388402 - L1MEc LINE L1 -4098 2298 1518 25 0 0 0 chr5 42697691 42697716 -160387816 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr5 42698210 42698240 -160387292 + AT_rich Low_complexity Low_complexity 1 30 0 396 229 162 0 chr5 42698757 42698862 -160386670 - L2 LINE L2 -2 3311 3190 774 31 0 0 chr5 42699651 42699748 -160385784 + (TCCCC)n Simple_repeat Simple_repeat 5 101 0 1937 140 10 14 chr5 42699748 42700040 -160385492 - AluSx SINE Alu -21 291 1 845 177 65 0 chr5 42700367 42700553 -160384979 - MER3 DNA MER1_type -10 199 2 242 276 0 46 chr5 42700699 42700786 -160384746 - L2 LINE L2 -407 2906 2824 2430 89 0 0 chr5 42700837 42701139 -160384393 - AluSg SINE Alu -8 302 1 1044 262 37 37 chr5 42701142 42701349 -160384183 + L2 LINE L2 2959 3168 -145 1808 175 0 19 chr5 42701349 42701658 -160383874 - AluJo SINE Alu -9 303 1 1044 262 37 37 chr5 42701658 42701805 -160383727 + L2 LINE L2 3167 3313 0 1953 110 84 0 chr5 42702813 42703086 -160382446 + AluSg SINE Alu 5 300 -10 24 0 0 0 chr5 42704582 42704606 -160380926 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr5 42704930 42704958 -160380574 + AT_rich Low_complexity Low_complexity 1 28 0 419 301 74 0 chr5 42705196 42705359 -160380173 + MIR SINE MIR 81 255 -7 920 233 19 64 chr5 42706030 42706296 -160379236 + HAL1 LINE L1 1 254 -2253 246 336 97 0 chr5 42706304 42706417 -160379115 + HAL1 LINE L1 383 506 -2001 210 171 0 0 chr5 42706460 42706501 -160379031 + (TTG)n Simple_repeat Simple_repeat 1 41 0 790 299 45 14 chr5 42706501 42706722 -160378810 - MIR SINE MIR -12 250 23 1586 179 59 15 chr5 42706724 42706814 -160378718 + MER58B DNA MER1_type 4 89 -2331 2035 169 68 52 chr5 42706814 42707311 -160378221 - MLT1D LTR MaLR 0 505 1 1586 179 59 15 chr5 42707311 42707544 -160377988 + MER58B DNA MER1_type 89 341 0 831 251 82 98 chr5 42707550 42708210 -160377322 + HAL1 LINE L1 793 1441 -1066 1898 129 47 0 chr5 42708930 42709209 -160376323 - AluSx SINE Alu -20 292 1 267 270 153 22 chr5 42709476 42709613 -160375919 + L2 LINE L2 3159 3313 0 877 259 59 39 chr5 42709840 42710095 -160375437 - MIR SINE MIR -2 260 1 630 162 7 15 chr5 42710112 42710248 -160375284 + L1MB8 LINE L1 6044 6178 0 181 200 0 0 chr5 42710500 42710535 -160374997 + L2 LINE L2 3274 3308 -5 1751 138 0 4 chr5 42711182 42711443 -160374089 - AluSx SINE Alu -9 303 44 800 271 87 27 chr5 42711456 42711788 -160373744 - L2 LINE L2 -449 2865 2514 183 42 0 0 chr5 42712557 42712581 -160372951 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr5 42712704 42712728 -160372804 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr5 42712733 42712754 -160372778 + (T)n Simple_repeat Simple_repeat 1 21 0 712 114 29 9 chr5 42712800 42712905 -160372627 - U6 snRNA snRNA 0 107 1 457 236 65 96 chr5 42713314 42713543 -160371989 + MER112 DNA MER1_type 32 253 -7 291 247 13 0 chr5 42714006 42714083 -160371449 + MER113 DNA MER1_type? 4 81 -440 689 226 37 0 chr5 42714130 42714294 -160371238 - L1MB5 LINE L1 -9 6165 5996 5091 36 2 2 chr5 42714310 42714951 -160370581 - L1PA4 LINE L1 -757 5389 4749 6498 26 1 0 chr5 42714960 42715722 -160369810 + L1PA4 LINE L1 5393 6155 0 774 240 82 33 chr5 42715732 42716036 -160369496 + MER113 DNA MER1_type? 154 472 -49 222 293 155 26 chr5 42716535 42716651 -160368881 + MIR SINE MIR 118 248 -14 5283 123 40 67 chr5 42716698 42717366 -160368166 - L1MA5A LINE L1 -4 6935 6251 4259 121 19 0 chr5 42717366 42718004 -160367528 - MER39B LTR ERV1 -1 652 3 5283 123 40 67 chr5 42718004 42718337 -160367195 - L1MA5A LINE L1 -688 6251 5961 2129 124 0 13 chr5 42718337 42718644 -160366888 - AluSx SINE Alu -9 303 1 5283 123 40 67 chr5 42718644 42718709 -160366823 - L1MA5A LINE L1 -978 5961 5896 8869 206 32 34 chr5 42718725 42719908 -160365624 - L1MA5A LINE L1 -1793 4995 3812 1614 158 16 63 chr5 42719908 42720224 -160365308 - AluJb SINE Alu -11 301 1 8869 206 32 34 chr5 42720224 42720758 -160364774 - L1MA5A LINE L1 -2976 3812 3279 1647 189 7 0 chr5 42720758 42721038 -160364494 - AluJo SINE Alu -30 282 1 8869 206 32 34 chr5 42721038 42724126 -160361406 - L1MA5A LINE L1 -3509 3279 15 242 250 0 0 chr5 42724267 42724319 -160361213 + (TAA)n Simple_repeat Simple_repeat 1 52 0 753 251 121 9 chr5 42724322 42724545 -160360987 - MIR SINE MIR 0 262 15 6682 135 59 1 chr5 42724894 42726057 -160359475 + Tigger3b DNA MER2_type 1 1231 0 23 68 0 0 chr5 42726206 42726250 -160359282 + AT_rich Low_complexity Low_complexity 1 44 0 2372 103 0 0 chr5 42726873 42727184 -160358348 + AluY SINE Alu 1 311 0 340 225 225 38 chr5 42780459 42780619 -160304913 + MIR3 SINE MIR 8 197 -11 275 311 111 11 chr5 42783549 42783639 -160301893 - L2 LINE L2 -31 3241 3143 1819 186 0 0 chr5 42784801 42785107 -160300425 - AluJo SINE Alu -6 306 1 5331 202 98 56 chr5 42785126 42785299 -160300233 - L1MC4a LINE L1 0 7808 7644 2151 146 0 0 chr5 42785299 42785607 -160299925 + AluSx SINE Alu 3 310 -2 5331 202 98 56 chr5 42785607 42787262 -160298270 - L1MC4a LINE L1 -164 7644 5903 309 262 10 12 chr5 42787646 42787926 -160297606 - L1ME2 LINE L1 -229 5935 5654 502 293 118 7 chr5 42788117 42788387 -160297145 - LTR16C LTR ERVL -2 489 190 438 315 38 25 chr5 42789488 42789726 -160295806 - L1MC4a LINE L1 -1894 5914 5674 258 192 125 85 chr5 42789749 42790048 -160295484 - L1MC4a LINE L1 -789 5357 5176 1022 237 217 15 chr5 42790250 42790646 -160294886 - MLT1D LTR MaLR -29 476 1 249 330 40 0 chr5 42790682 42790855 -160294677 - L1MC4a LINE L1 -1217 4929 4750 479 295 70 61 chr5 42790955 42791297 -160294235 - L1MC4a LINE L1 -1546 4600 4256 304 229 57 9 chr5 42791349 42791454 -160294078 - L1MC4a LINE L1 -1952 4194 4085 274 231 26 0 chr5 42791487 42791565 -160293967 - MER116 DNA Mariner 0 80 1 534 190 145 169 chr5 42791630 42791961 -160293571 - L2 LINE L2 0 3313 2991 333 100 0 0 chr5 42791963 42792013 -160293519 + (G)n Simple_repeat Simple_repeat 1 50 0 316 346 44 11 chr5 42792183 42792365 -160293167 - L1MC4a LINE L1 -2230 3916 3729 194 280 20 0 chr5 42792759 42792809 -160292723 - MIR SINE MIR -102 160 110 195 42 0 0 chr5 42794006 42794030 -160291502 + (T)n Simple_repeat Simple_repeat 1 24 0 333 331 15 15 chr5 42794036 42794166 -160291366 + MER5A DNA MER1_type 50 179 -10 973 219 73 5 chr5 42794521 42794740 -160290792 - MIR SINE MIR 0 262 29 297 309 147 22 chr5 42794850 42794986 -160290546 + MIR3 SINE MIR 5 157 -51 21 0 0 0 chr5 42795413 42795434 -160290098 + AT_rich Low_complexity Low_complexity 1 21 0 1629 59 0 18 chr5 42797032 42797251 -160288281 - L1PA7 LINE L1 0 6154 5940 647 155 295 14 chr5 42798307 42798514 -160287018 + MER5C DNA MER1_type 57 321 -3 26 0 0 0 chr5 42798626 42798652 -160286880 + AT_rich Low_complexity Low_complexity 1 26 0 4256 165 62 15 chr5 42798656 42798798 -160286734 - L1MB2 LINE L1 -6 6165 6031 2253 126 21 12 chr5 42798798 42799132 -160286400 - MER1B DNA MER1_type 0 337 1 4256 165 62 15 chr5 42799132 42800196 -160285336 - L1MB2 LINE L1 -140 6031 4904 16087 109 18 182 chr5 42800390 42801605 -160283927 + L1PA8A LINE L1 4 1415 -5031 180 77 0 0 chr5 42801605 42801631 -160283901 + (CAA)n Simple_repeat Simple_repeat 2 27 0 16087 109 18 182 chr5 42801631 42808122 -160277410 + L1PA8A LINE L1 1415 6433 -13 692 169 79 29 chr5 42808545 42808724 -160276808 - L1ME2 LINE L1 0 6334 6003 1830 162 7 7 chr5 42808810 42809100 -160276432 + AluJo SINE Alu 1 290 -22 2321 113 90 3 chr5 42809103 42809438 -160276094 + THE1B LTR MaLR 1 364 0 580 278 105 60 chr5 42811627 42811875 -160273657 + MIR SINE MIR 1 259 -3 660 261 54 14 chr5 42812476 42812685 -160272847 - MIR SINE MIR -3 259 44 233 364 117 28 chr5 42813311 42813808 -160271724 + L2 LINE L2 2420 2960 -354 2745 23 0 0 chr5 42815520 42815822 -160269710 + AluY SINE Alu 3 304 -7 1723 245 74 17 chr5 42815843 42816304 -160269228 + MLT1G1 LTR MaLR 109 595 0 261 241 203 53 chr5 42816358 42816734 -160268798 - L1MC4a LINE L1 -111 6010 5578 2211 152 48 0 chr5 42816846 42817221 -160268311 - MER57A LTR ERV1 -9 394 2 1117 153 0 0 chr5 42817222 42817392 -160268140 - MER57A-int LTR ERV1 0 7537 7368 225 132 26 0 chr5 42817392 42817430 -160268102 - LTR54B LTR ERV1 -226 272 234 421 71 18 0 chr5 42817430 42817486 -160268046 - MER57A-int LTR ERV1 -202 7335 7279 805 101 23 23 chr5 42817486 42817615 -160267917 - LTR54B LTR ERV1 -367 131 3 17496 125 32 55 chr5 42817615 42817716 -160267816 - MER57A-int LTR ERV1 -391 7146 7044 2128 78 34 20 chr5 42817716 42818009 -160267523 + AluSq SINE Alu 1 297 -16 2222 102 0 0 chr5 42818012 42818297 -160267235 - AluSg1 SINE Alu -24 285 1 17496 125 32 55 chr5 42818297 42821444 -160264088 - MER57A-int LTR ERV1 -495 7042 1927 2340 82 10 0 chr5 42821444 42821736 -160263796 + AluSp SINE Alu 1 295 -18 17496 125 32 55 chr5 42821736 42821939 -160263593 - MER57A-int LTR ERV1 -5610 1927 1721 339 234 0 0 chr5 42822040 42822117 -160263415 - MER57A-int LTR ERV1 -2890 3441 3365 555 181 0 0 chr5 42822189 42822283 -160263249 - MER57A-int LTR ERV1 -2991 3340 3247 362 217 89 66 chr5 42822356 42822591 -160262941 - MER57A-int LTR ERV1 -3724 1980 1228 1575 89 5 0 chr5 42822710 42822913 -160262619 - AluSp SINE Alu -11 302 99 257 193 88 0 chr5 42822958 42823015 -160262517 - MER34C LTR ERV1 -369 216 155 2121 138 7 0 chr5 42823020 42823324 -160262208 + AluSx SINE Alu 1 306 -6 5402 137 32 5 chr5 42823575 42824395 -160261137 - MER57A-int LTR ERV1 -6695 842 1 2624 144 18 2 chr5 42824395 42824792 -160260740 - MER57A LTR ERV1 0 403 1 1832 201 14 58 chr5 42824795 42825229 -160260303 + MLT1C LTR MaLR 53 467 0 419 152 0 0 chr5 42825398 42825464 -160260068 + MLT1F1 LTR MaLR 502 567 0 289 312 40 75 chr5 42826164 42826363 -160259169 + MIR SINE MIR 23 214 -48 210 119 70 0 chr5 42827077 42827112 -160258420 + MIR SINE MIR 30 115 -143 2398 112 0 0 chr5 42827294 42827606 -160257926 - AluSx SINE Alu 0 312 1 296 324 18 0 chr5 42828385 42828496 -160257036 - MIR3 SINE MIR -6 202 90 331 260 26 84 chr5 42828758 42828771 -160256761 + MIR SINE MIR 117 129 -133 2270 157 10 54 chr5 42828771 42829179 -160256353 + MLT1B LTR MaLR 1 390 0 331 260 26 84 chr5 42829179 42829319 -160256213 + MIR SINE MIR 129 261 -1 305 304 125 24 chr5 42830813 42830981 -160254551 - MER5A DNA MER1_type -4 185 1 198 218 75 27 chr5 42831275 42831359 -160254173 - MIR SINE MIR -64 144 107 448 246 42 8 chr5 42831856 42831974 -160253558 + MIR SINE MIR 23 144 -64 184 222 0 0 chr5 42832578 42832614 -160252918 + L2 LINE L2 3277 3312 -1 238 181 64 0 chr5 42832827 42832921 -160252611 + (TA)n Simple_repeat Simple_repeat 1 100 0 225 172 111 71 chr5 42832927 42833026 -160252506 - L1MB2 LINE L1 -1 6170 6068 2142 123 3 0 chr5 42833040 42833332 -160252200 - AluSp SINE Alu -20 293 1 22 56 0 0 chr5 42833432 42833468 -160252064 + AT_rich Low_complexity Low_complexity 1 36 0 242 290 0 0 chr5 42833780 42833842 -160251690 - L2 LINE L2 -28 3285 3224 249 314 20 10 chr5 42833914 42834016 -160251516 - L2 LINE L2 -673 2641 2539 2445 84 0 3 chr5 42834016 42834327 -160251205 + AluY SINE Alu 1 310 -1 271 204 0 0 chr5 42834503 42834552 -160250980 + Charlie8 DNA MER1_type 117 165 -2252 31 0 0 0 chr5 42835331 42835362 -160250170 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr5 42835535 42835556 -160249976 + (GCTG)n Simple_repeat Simple_repeat 1 21 0 208 277 0 0 chr5 42836086 42836133 -160249399 + L2 LINE L2 3133 3179 -93 2748 121 31 5 chr5 42836173 42836561 -160248971 + MER48 LTR ERV1 1 398 0 336 118 289 13 chr5 42836611 42836687 -160248845 + MER4D LTR ERV1 1 97 -775 2014 185 91 37 chr5 42836688 42837152 -160248380 - LTR2B LTR ERV1 0 490 2 45373 100 28 27 chr5 42837152 42842950 -160242582 - Harlequin LTR ERV1 -8 6888 939 1057 105 0 0 chr5 42842950 42843093 -160242439 - AluY SINE Alu -16 295 153 45373 100 28 27 chr5 42843093 42844033 -160241499 - Harlequin LTR ERV1 -5957 939 1 1910 191 75 30 chr5 42844033 42844472 -160241060 - LTR2B LTR ERV1 0 490 32 3636 165 70 57 chr5 42844488 42845289 -160240243 + MER4D LTR ERV1 93 903 0 228 266 180 29 chr5 42845692 42845831 -160239701 - MIR SINE MIR -83 179 20 225 287 178 0 chr5 42846502 42846603 -160238929 + MIR SINE MIR 28 146 -62 352 307 114 76 chr5 42846780 42847269 -160238263 + L2 LINE L2 2470 2976 -337 349 289 0 0 chr5 42847745 42847861 -160237671 - MIR3 SINE MIR -3 205 89 2209 119 0 0 chr5 42847964 42848258 -160237274 - AluSx SINE Alu -18 294 1 260 331 111 22 chr5 42848279 42848460 -160237072 - MIR SINE MIR -64 198 2 354 246 12 35 chr5 42848632 42848733 -160236799 + MIR SINE MIR 5 103 -105 266 130 0 0 chr5 42848739 42848785 -160236747 + Alu SINE Alu 257 302 0 210 253 76 0 chr5 42848854 42848933 -160236599 + MIR SINE MIR 108 192 -70 1521 127 125 30 chr5 42850194 42850492 -160235040 + MSTA LTR MaLR 1 342 -33 1932 122 0 4 chr5 42850492 42850762 -160234770 - AluSx SINE Alu -4 308 40 1521 127 125 30 chr5 42850762 42850800 -160234732 + MSTA LTR MaLR 342 375 0 194 322 129 0 chr5 42851206 42851377 -160234155 + L2 LINE L2 2128 2320 -994 3264 76 62 5 chr5 42851637 42852057 -160233475 + MLT2A1 LTR ERVL 1 444 0 33221 72 8 9 chr5 42852057 42853440 -160232092 + HERVL-A1 LTR ERVL 1 1384 -4270 2309 107 7 0 chr5 42853440 42853749 -160231783 + AluY SINE Alu 1 311 0 33221 72 8 9 chr5 42853749 42856569 -160228963 + HERVL-A1 LTR ERVL 1384 4200 -1454 3288 190 18 16 chr5 42856615 42857024 -160228508 + L1MB5 LINE L1 5549 5961 -213 2357 101 0 0 chr5 42857024 42857322 -160228210 - AluSg SINE Alu -12 298 1 3288 190 18 16 chr5 42857322 42857537 -160227995 + L1MB5 LINE L1 5961 6174 0 883 278 53 35 chr5 42857720 42858058 -160227474 - L2 LINE L2 -85 3228 2885 624 176 46 9 chr5 42858081 42858189 -160227343 + MER45A DNA AcHobo 63 174 -4 1018 240 86 31 chr5 42858224 42858600 -160226932 + MER57A LTR ERV1 1 402 0 669 243 151 0 chr5 42860270 42860422 -160225110 + MER5A DNA MER1_type 9 183 -6 895 199 15 0 chr5 42861103 42861299 -160224233 - L1MD3 LINE L1 -10 7985 7787 1949 108 28 3 chr5 42861299 42861587 -160223945 + AluSx SINE Alu 1 295 -17 2287 138 19 20 chr5 42861624 42861988 -160223544 + MLT1A1 LTR MaLR 1 505 0 2494 177 35 8 chr5 42861993 42862478 -160223054 - L1MC4a LINE L1 -207 7601 7104 249 167 0 0 chr5 42862660 42862714 -160222818 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 1094 261 99 34 chr5 42863065 42863509 -160222023 + MLT1K LTR MaLR 1 473 -3 509 121 0 0 chr5 42863545 42863611 -160221921 + MER1B DNA MER1_type 268 333 0 986 281 36 17 chr5 42864800 42865102 -160220430 + L2 LINE L2 2551 2858 -456 1075 258 49 53 chr5 42865193 42865604 -160219928 - MLT1I LTR MaLR 0 409 1 1916 78 39 11 chr5 42865716 42865999 -160219533 + L1MA2 LINE L1 6014 6304 0 449 192 41 81 chr5 42866288 42866460 -160219072 + MER103 DNA DNA 2 166 0 283 238 86 57 chr5 42866907 42867012 -160218520 + L2 LINE L2 2946 3053 -219 1825 109 0 0 chr5 42867658 42867905 -160217627 - AluSx SINE Alu -39 273 27 574 196 217 22 chr5 42868010 42868240 -160217292 + ORSL DNA AcHobo 1 275 0 786 154 5 135 chr5 42868384 42868592 -160216940 + MER53 DNA DNA 7 187 -2 455 0 18 0 chr5 42869661 42869716 -160215816 + (TG)n Simple_repeat Simple_repeat 2 57 0 360 233 41 99 chr5 42869893 42870065 -160215467 - MER103 DNA DNA -3 163 2 610 274 53 31 chr5 42870613 42870839 -160214693 + L2 LINE L2 3081 3311 -2 1861 148 10 3 chr5 42871896 42872193 -160213339 - AluJo SINE Alu -7 305 7 453 66 0 0 chr5 42873824 42873885 -160211647 + (TCC)n Simple_repeat Simple_repeat 3 63 0 531 280 27 7 chr5 42874834 42874984 -160210548 - MER5A DNA MER1_type -1 188 36 251 27 0 27 chr5 42875928 42875965 -160209567 + (TG)n Simple_repeat Simple_repeat 2 37 0 1107 245 41 41 chr5 42876082 42876425 -160209107 + L2 LINE L2 2569 2911 -403 932 207 29 29 chr5 42876428 42876540 -160208992 - MER20 DNA MER1_type -8 211 97 2553 114 3 14 chr5 42876540 42876908 -160208624 + THE1B LTR MaLR 1 364 0 932 207 29 29 chr5 42876908 42877003 -160208529 - MER20 DNA MER1_type -121 98 4 184 103 0 51 chr5 42877022 42877061 -160208471 + L2 LINE L2 2927 2963 -350 581 285 45 49 chr5 42877129 42877417 -160208115 + L2 LINE L2 2971 3257 -56 2276 94 0 3 chr5 42877779 42878086 -160207446 - AluSq SINE Alu -7 306 1 244 200 15 0 chr5 42878783 42878830 -160206702 - MER53 DNA DNA -3 186 136 1887 117 8 0 chr5 42878830 42879095 -160206437 + L1MC1 LINE L1 6061 6327 -6 244 200 15 0 chr5 42879095 42879112 -160206420 - MER53 DNA DNA -53 136 121 279 297 0 0 chr5 42881061 42881135 -160204397 + (CATA)n Simple_repeat Simple_repeat 2 75 0 387 280 40 8 chr5 42881417 42881549 -160203983 - MIR SINE MIR -62 146 62 298 261 0 72 chr5 42882014 42882125 -160203407 + MIR SINE MIR 29 131 -77 350 267 105 37 chr5 42884432 42884619 -160200913 + MIR SINE MIR 50 253 -9 715 291 55 14 chr5 42884967 42885256 -160200276 + Charlie2 DNA MER1_type 1 301 -2561 1314 272 74 27 chr5 42885278 42885764 -160199768 + L1MC4 LINE L1 7392 7900 -142 530 184 253 13 chr5 42886011 42886169 -160199363 + Charlie2a DNA MER1_type 1468 1663 -1199 494 192 96 8 chr5 42886185 42886310 -160199222 + Charlie2a DNA MER1_type 2724 2859 -3 501 282 92 7 chr5 42886910 42887052 -160198480 + MIR SINE MIR 1 154 -108 209 194 0 0 chr5 42887774 42887810 -160197722 + (TCCA)n Simple_repeat Simple_repeat 1 36 0 480 253 68 19 chr5 42889038 42889200 -160196332 - MIR SINE MIR -54 208 39 494 250 8 16 chr5 42889608 42889732 -160195800 + L2 LINE L2 3187 3309 -4 819 179 28 0 chr5 42891072 42891217 -160194315 + MER5B DNA MER1_type 3 151 -27 232 254 0 17 chr5 42891340 42891399 -160194133 - MIR SINE MIR -157 105 48 23 0 0 0 chr5 42892929 42892952 -160192580 + GC_rich Low_complexity Low_complexity 1 23 0 187 276 207 0 chr5 42893969 42894056 -160191476 + MIR SINE MIR 158 262 0 259 176 78 0 chr5 42900309 42900360 -160185172 - L2 LINE L2 -14 3258 3204 2002 136 0 0 chr5 42901239 42901533 -160183999 + AluSx SINE Alu 9 302 -10 299 182 80 57 chr5 42901534 42901622 -160183910 + MER5B DNA MER1_type 55 144 -34 718 160 56 0 chr5 42903233 42903358 -160182174 - MER58B DNA MER1_type -2 339 208 548 184 0 0 chr5 42903401 42903488 -160182044 - MER58B DNA MER1_type -252 89 3 467 179 32 11 chr5 42903530 42903625 -160181907 - MIR3 SINE MIR -22 186 90 330 26 0 0 chr5 42904165 42904204 -160181328 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2215 112 0 6 chr5 42904218 42904531 -160181001 + AluSx SINE Alu 1 311 -1 754 154 8 0 chr5 42904531 42904648 -160180884 - AluJo/FLAM SINE Alu -184 118 1 188 288 59 59 chr5 42905107 42905225 -160180307 + MIR SINE MIR 17 134 -128 187 218 109 18 chr5 42905588 42905643 -160179889 - MIR SINE MIR -71 191 132 1306 254 23 3 chr5 42906240 42906539 -160178993 + MLT1H LTR MaLR 2 306 -243 234 264 88 48 chr5 42906769 42906894 -160178638 + MARNA DNA Mariner 409 538 -48 1769 151 18 85 chr5 42907513 42907903 -160177629 - L1MA7 LINE L1 0 6291 5928 525 157 24 0 chr5 42909144 42909227 -160176305 - MER58B DNA MER1_type 0 341 257 907 200 47 5 chr5 42909335 42909525 -160176007 - MER58B DNA MER1_type -90 251 54 227 242 17 75 chr5 42909621 42909741 -160175791 + MIR SINE MIR 109 221 -41 887 262 170 54 chr5 42909783 42910070 -160175462 - MLT1L LTR MaLR 0 615 363 2509 59 0 7 chr5 42910070 42910375 -160175157 - AluY SINE Alu -8 303 1 887 262 170 54 chr5 42910375 42910606 -160174926 - MLT1L LTR MaLR -252 363 37 197 246 154 0 chr5 42911460 42911525 -160174007 + L3 LINE CR1 1502 1576 -1 216 158 0 0 chr5 42911629 42911667 -160173865 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 241 324 27 74 chr5 42911817 42911965 -160173567 - L2 LINE L2 -193 3079 2939 581 109 0 10 chr5 42911977 42912078 -160173454 + (TCCA)n Simple_repeat Simple_repeat 3 102 0 329 213 25 82 chr5 42912699 42912821 -160172711 - MIR3 SINE MIR -3 205 91 399 268 167 0 chr5 42912922 42913060 -160172472 + MIR SINE MIR 28 188 -74 405 192 21 62 chr5 42913097 42913217 -160172315 + MLT1H LTR MaLR 92 236 -232 1199 199 119 11 chr5 42913277 42913538 -160171994 - L1ME LINE L1 -442 5722 5434 252 292 11 27 chr5 42914032 42914143 -160171389 + CT-rich Low_complexity Low_complexity 1 109 0 430 209 18 9 chr5 42914443 42914553 -160170979 - L1ME LINE L1 -318 5803 5693 1504 179 21 14 chr5 42914574 42914864 -160170668 + AluJb SINE Alu 1 292 -20 469 301 21 11 chr5 42914873 42915059 -160170473 - L1ME LINE L1 -422 5699 5512 21 71 0 0 chr5 42915080 42915122 -160170410 + AT_rich Low_complexity Low_complexity 1 42 0 836 304 4 39 chr5 42915370 42915650 -160169882 + MLT1I LTR MaLR 3 272 -137 259 246 0 16 chr5 42915863 42915924 -160169608 + MLT1I LTR MaLR 348 407 -2 180 97 0 0 chr5 42916375 42916406 -160169126 + (TG)n Simple_repeat Simple_repeat 1 31 0 378 61 0 0 chr5 42916406 42916455 -160169077 + (GA)n Simple_repeat Simple_repeat 2 50 0 272 281 34 48 chr5 42917249 42917395 -160168137 - MER5A DNA MER1_type 0 189 46 285 188 0 0 chr5 42917731 42917779 -160167753 - L2 LINE L2 -14 3299 3252 365 70 18 0 chr5 42917908 42917965 -160167567 + (TG)n Simple_repeat Simple_repeat 1 58 0 421 248 62 8 chr5 42918097 42918226 -160167306 - L2 LINE L2 0 3313 3178 647 283 63 1 chr5 42919233 42919536 -160165996 - LTR16C LTR ERVL -134 357 3 394 270 18 9 chr5 42919777 42919888 -160165644 - MIR SINE MIR -116 146 35 222 266 109 0 chr5 42919977 42920041 -160165491 - L2 LINE L2 -9 3304 3234 1119 278 75 26 chr5 42920104 42920681 -160164851 - MER115 DNA AcHobo 0 693 75 22 88 0 0 chr5 42921258 42921315 -160164217 + AT_rich Low_complexity Low_complexity 1 57 0 1129 68 6 6 chr5 42921552 42921713 -160163819 + (TCTA)n Simple_repeat Simple_repeat 4 164 0 1738 150 0 51 chr5 42921744 42922057 -160163475 - AluJo SINE Alu -15 297 1 1935 198 16 23 chr5 42922320 42922750 -160162782 - MER63B DNA MER1_type -6 430 4 1081 176 88 15 chr5 42922777 42922981 -160162551 - MER20 DNA MER1_type 0 219 1 260 259 19 0 chr5 42923081 42923135 -160162397 - L2 LINE L2 -67 3205 3151 821 191 124 5 chr5 42923748 42923942 -160161590 - MER20 DNA MER1_type 0 219 3 260 259 19 0 chr5 42924042 42924096 -160161436 - L2 LINE L2 -67 3205 3151 488 264 17 40 chr5 42925200 42925374 -160160158 + MER104 DNA Tc2 7 176 -4 724 281 43 0 chr5 42925441 42925651 -160159881 + MIR SINE MIR 8 226 -36 2369 159 43 26 chr5 42926385 42926806 -160158726 - MSTA LTR MaLR 0 428 1 905 221 24 19 chr5 42927972 42928180 -160157352 + MER63A DNA MER1_type 2 210 0 1312 159 0 10 chr5 42928199 42928407 -160157125 - MER20 DNA MER1_type -2 217 12 2833 93 0 0 chr5 42928536 42928900 -160156632 - THE1B LTR MaLR 0 364 1 206 353 24 0 chr5 42929070 42929155 -160156377 - MIR3 SINE MIR -35 173 87 231 326 109 11 chr5 42931141 42931233 -160154299 + L2 LINE L2 3146 3246 -26 1305 207 31 34 chr5 42931247 42931633 -160153899 - L1ME2 LINE L1 -3 6175 5785 1661 213 37 93 chr5 42931792 42932232 -160153300 + MLT1J LTR MaLR 3 410 -101 2297 98 0 0 chr5 42932232 42932551 -160152981 + AluSx SINE Alu 1 319 0 1661 213 37 93 chr5 42932551 42932648 -160152884 + MLT1J LTR MaLR 410 511 0 21 36 0 0 chr5 42932890 42932918 -160152614 + AT_rich Low_complexity Low_complexity 1 28 0 346 233 17 12 chr5 42933847 42934019 -160151513 + (TA)n Simple_repeat Simple_repeat 1 173 0 606 258 143 14 chr5 42934096 42934313 -160151219 - MIR SINE MIR 0 262 18 481 157 10 10 chr5 42935545 42935647 -160149885 + CT-rich Low_complexity Low_complexity 3 104 0 2027 170 86 105 chr5 42935694 42936266 -160149266 + MLT1E1 LTR MaLR 80 640 -14 241 170 64 0 chr5 42937793 42937840 -160147692 + MIR SINE MIR 117 166 -96 610 266 140 0 chr5 42937875 42938082 -160147450 + MIR SINE MIR 17 252 -10 369 224 252 21 chr5 42938479 42938622 -160146910 + MER5B DNA MER1_type 1 176 -2 258 255 302 7 chr5 42939021 42939170 -160146362 + MIR SINE MIR 4 196 -66 344 243 11 11 chr5 42939222 42939399 -160146133 + (ATGGTG)n Simple_repeat Simple_repeat 1 177 0 809 296 115 11 chr5 42939533 42939908 -160145624 - MLT2F LTR ERVL -245 418 5 235 175 0 0 chr5 42940937 42940977 -160144555 + MIR SINE MIR 113 152 -56 277 269 108 16 chr5 42941174 42941328 -160144204 + MLT1J2 LTR MaLR 32 234 -303 2224 119 0 3 chr5 42942766 42943060 -160142472 + AluSg SINE Alu 1 293 -17 683 254 71 0 chr5 42943063 42943284 -160142248 + MIR SINE MIR 23 260 -2 386 257 9 18 chr5 42943428 42943537 -160141995 - L2 LINE L2 0 3313 3206 254 259 134 9 chr5 42943539 42943651 -160141881 + L1ME LINE L1 5758 5883 -238 412 243 0 27 chr5 42943891 42944002 -160141530 - L2 LINE L2 0 3313 3206 272 254 127 17 chr5 42944004 42944122 -160141410 + L1ME LINE L1 5758 5888 -233 2389 145 39 12 chr5 42944844 42945259 -160140273 + MSTB LTR MaLR 1 426 0 517 150 286 8 chr5 42945805 42945938 -160139594 + MER97a DNA MER1_type? 10 179 -715 932 105 46 0 chr5 42946459 42946612 -160138920 + MER5A DNA MER1_type 27 186 -3 1486 171 31 49 chr5 42946757 42947043 -160138489 + AluJb SINE Alu 1 281 -31 282 243 153 0 chr5 42947511 42947622 -160137910 + MIR SINE MIR 48 175 -87 536 81 0 81 chr5 42947855 42947942 -160137590 + MADE1 DNA Mariner 1 80 0 1988 188 41 47 chr5 42948437 42948922 -160136610 + MLT1D LTR MaLR 21 502 -3 336 296 0 0 chr5 42949335 42949416 -160136116 + MIR SINE MIR 59 139 -123 1976 141 27 3 chr5 42950514 42950813 -160134719 + AluSx SINE Alu 1 306 -6 23 33 0 0 chr5 42951139 42951169 -160134363 + AT_rich Low_complexity Low_complexity 1 30 0 180 214 0 24 chr5 42951429 42951471 -160134061 - L2 LINE L2 -50 3222 3182 606 181 237 6 chr5 42951594 42951771 -160133761 + MER20 DNA MER1_type 1 218 -1 471 279 22 7 chr5 42951992 42952128 -160133404 + MIR3 SINE MIR 58 195 -13 22 0 0 0 chr5 42952250 42952272 -160133260 + AT_rich Low_complexity Low_complexity 1 22 0 213 273 58 41 chr5 42953494 42953615 -160131917 - L2 LINE L2 -1 3312 3190 644 259 118 72 chr5 42953672 42954197 -160131335 - MLT1H LTR MaLR 0 549 1 21 36 0 0 chr5 42954261 42954289 -160131243 + AT_rich Low_complexity Low_complexity 1 28 0 2145 127 7 0 chr5 42954356 42954647 -160130885 - AluSc SINE Alu -16 293 1 228 35 0 0 chr5 42955476 42955505 -160130027 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 445 201 222 14 chr5 42955546 42955690 -160129842 - MER5B DNA MER1_type -4 174 1 2434 229 87 13 chr5 42957221 42958337 -160127195 - L1MC4 LINE L1 -149 7893 6541 2206 123 3 7 chr5 42958876 42959176 -160126356 + AluSp SINE Alu 3 301 -12 458 168 42 21 chr5 42959206 42959301 -160126231 - L1MC4 LINE L1 -1497 6545 6449 1940 198 46 50 chr5 42959530 42960029 -160125503 + Charlie4a DNA MER1_type 2 498 -10 234 290 14 0 chr5 42960134 42960203 -160125329 + MIR SINE MIR 192 261 -1 369 239 116 99 chr5 42960258 42960542 -160124990 + MLT1H LTR MaLR 209 497 -52 * 1933 175 101 117 chr5 42960519 42961194 -160124338 + MER63C DNA MER1_type 267 930 0 242 309 0 44 chr5 42961230 42961366 -160124166 - LTR16C LTR ERVL -86 405 276 235 296 12 0 chr5 42962425 42962506 -160123026 + MARNA DNA Mariner 277 358 -228 527 271 81 41 chr5 42962524 42962745 -160122787 - MIR SINE MIR -21 241 12 897 252 111 47 chr5 42962777 42963138 -160122394 - L2 LINE L2 -33 3280 2897 1572 134 112 4 chr5 42963139 42963415 -160122117 + AluJo SINE Alu 1 306 -6 1607 175 12 118 chr5 42963431 42963836 -160121696 + MLT1A1 LTR MaLR 1 362 -3 540 244 71 62 chr5 42963855 42964080 -160121452 - L2 LINE L2 -508 2806 2580 789 268 128 62 chr5 42964819 42965124 -160120408 + L2 LINE L2 2385 2737 -577 2130 120 10 10 chr5 42965124 42965423 -160120109 - AluSp SINE Alu -14 299 1 789 268 128 62 chr5 42965423 42965617 -160119915 + L2 LINE L2 2737 2917 -397 353 213 50 0 chr5 42965719 42965799 -160119733 - MER94 DNA DNA -50 84 1 209 234 75 56 chr5 42965843 42965950 -160119582 - L2 LINE L2 -1 3312 3204 2586 167 31 2 chr5 42967961 42968375 -160117157 + MSTB LTR MaLR 1 426 0 336 48 0 0 chr5 42968997 42969039 -160116493 + (CA)n Simple_repeat Simple_repeat 1 42 0 342 205 51 26 chr5 42969581 42969659 -160115873 + MIR SINE MIR 28 107 -155 551 246 39 30 chr5 42969691 42969894 -160115638 - MIR SINE MIR -55 207 3 212 301 36 0 chr5 42969926 42970009 -160115523 + MIR SINE MIR 124 209 -53 593 239 193 10 chr5 42970176 42970373 -160115159 - MIR SINE MIR -17 245 13 300 27 0 0 chr5 42970446 42970483 -160115049 + (TG)n Simple_repeat Simple_repeat 2 38 0 6983 111 34 8 chr5 42970552 42972084 -160113448 + L1MA2 LINE L1 4737 6304 0 355 323 93 58 chr5 42972719 42973010 -160112522 - L2 LINE L2 -44 3228 2928 2078 140 3 0 chr5 42973897 42974189 -160111343 - AluSx SINE Alu -19 293 1 223 240 0 93 chr5 42974683 42974758 -160110774 - MIR3 SINE MIR -135 73 6 614 250 60 24 chr5 42974834 42975002 -160110530 + MER5B DNA MER1_type 1 174 -4 853 210 113 16 chr5 42975597 42975783 -160109749 - MER63A DNA MER1_type -4 206 3 1607 241 106 34 chr5 42975898 42976597 -160108935 + L2 LINE L2 2302 3313 0 320 305 42 0 chr5 42976701 42976796 -160108736 - MIR3 SINE MIR -33 175 77 682 50 0 0 chr5 42977967 42978047 -160107485 + L1PA8 LINE L1 6075 6154 -18 306 0 0 0 chr5 42978048 42978082 -160107450 + (CA)n Simple_repeat Simple_repeat 2 35 0 800 259 81 24 chr5 42978257 42978504 -160107028 + MIR SINE MIR 1 261 -1 294 299 69 23 chr5 42979451 42979625 -160105907 + L2 LINE L2 2013 2194 -1120 700 244 78 69 chr5 42979641 42980063 -160105469 - HAL1 LINE L1 -34 2473 2048 337 295 139 12 chr5 42980226 42980392 -160105140 - HAL1 LINE L1 -686 1821 1635 474 288 0 0 chr5 42980460 42980592 -160104940 - HAL1 LINE L1 -880 1627 1496 2789 234 107 18 chr5 42980673 42981704 -160103828 - L1ME3 LINE L1 -45 6117 4990 852 282 57 31 chr5 42981699 42982157 -160103375 - HAL1 LINE L1 -1004 1503 1034 * 234 387 65 16 chr5 42982555 42982803 -160102729 + L2 LINE L2 2441 2700 -614 * 629 176 22 52 chr5 42982800 42982899 -160102633 + L2 LINE L2 3182 3277 -36 2464 134 22 3 chr5 42982899 42983256 -160102276 - THE1B LTR MaLR 0 364 1 629 176 22 52 chr5 42983256 42983292 -160102240 + L2 LINE L2 3277 3313 0 308 307 63 94 chr5 42983395 42983682 -160101850 + L2 LINE L2 2806 3083 -189 1117 263 94 38 chr5 42983723 42984095 -160101437 + MLT1I LTR MaLR 9 401 -8 483 308 111 11 chr5 42984233 42984457 -160101075 - MIR SINE MIR -13 249 3 2210 193 100 19 chr5 42985706 42986225 -160099307 - MER74B LTR ERVL -3 619 59 374 271 153 21 chr5 42986268 42986412 -160099120 - MIR SINE MIR -50 212 50 351 192 51 26 chr5 42987198 42987276 -160098256 + MIR SINE MIR 28 107 -155 560 243 45 30 chr5 42987307 42987509 -160098023 - MIR SINE MIR -55 207 3 371 270 103 0 chr5 42987541 42987667 -160097865 + MIR SINE MIR 124 262 0 1231 116 0 29 chr5 42988447 42988620 -160096912 + AluSg/x SINE Alu 134 301 -11 804 297 84 3 chr5 42989334 42989620 -160095912 + MLT1I LTR MaLR 2 310 -99 1194 126 29 29 chr5 42989984 42990190 -160095342 + MLT2C2 LTR ERVL 5 210 -254 30 103 0 0 chr5 42990226 42990333 -160095199 + AT_rich Low_complexity Low_complexity 1 107 0 406 288 46 17 chr5 42991291 42991491 -160094041 - MER63 DNA MER1_type 0 1062 1 376 318 104 10 chr5 42991951 42992143 -160093389 - MER63A DNA MER1_type 0 210 1 264 357 102 0 chr5 42992806 42992904 -160092628 + L2 LINE L2 3126 3233 -39 21 36 0 0 chr5 42993169 42993197 -160092335 + AT_rich Low_complexity Low_complexity 1 28 0 379 0 39 0 chr5 42994185 42994236 -160091296 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 186 43 0 0 chr5 42995595 42995618 -160089914 + (T)n Simple_repeat Simple_repeat 1 23 0 506 289 123 8 chr5 42996478 42996731 -160088801 - L1ME3A LINE L1 -311 5859 5578 267 150 0 0 chr5 42997701 42997741 -160087791 - MER3 DNA MER1_type -165 44 5 530 291 118 8 chr5 42997774 42998028 -160087504 - L1ME3A LINE L1 -311 5859 5578 228 111 0 0 chr5 42998138 42998174 -160087358 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 976 224 90 57 chr5 42998350 42998649 -160086883 - MLT1F LTR MaLR -23 519 211 331 340 0 11 chr5 42999313 42999407 -160086125 + L2 LINE L2 3155 3247 -25 390 311 37 30 chr5 43000035 43000170 -160085362 + L3 LINE CR1 1361 1496 -81 1028 186 0 31 chr5 43000673 43000815 -160084717 - MER5A DNA MER1_type -1 188 52 2390 186 25 48 chr5 43000815 43001332 -160084200 - MLT1D LTR MaLR 0 505 1 1028 186 0 31 chr5 43001332 43001383 -160084149 - MER5A DNA MER1_type -137 52 1 269 324 115 14 chr5 43001794 43001933 -160083599 - MIR SINE MIR -30 232 80 788 236 22 0 chr5 43003459 43003641 -160081891 - MIR SINE MIR -56 206 21 1867 163 30 0 chr5 43003656 43003957 -160081575 - AluJb SINE Alu -2 310 1 323 144 22 33 chr5 43003996 43004086 -160081446 + CT-rich Low_complexity Low_complexity 4 92 0 267 286 0 36 chr5 43004132 43004216 -160081316 - L2 LINE L2 -5 3267 3187 6818 25 28 1 chr5 43004380 43005181 -160080351 + L1PA4 LINE L1 5332 6153 -2 256 214 18 0 chr5 43006201 43006257 -160079275 - MLT2C1 LTR ERVL 0 520 464 247 24 24 24 chr5 43006328 43006348 -160079184 + (GA)n Simple_repeat Simple_repeat 2 21 -21 2258 111 0 10 chr5 43006348 43006654 -160078878 + AluSq SINE Alu 1 303 -10 247 24 24 24 chr5 43006654 43006674 -160078858 + (GA)n Simple_repeat Simple_repeat 20 42 0 2047 153 24 6 chr5 43006677 43007017 -160078515 - MLT2C1 LTR ERVL -51 346 1 498 331 64 0 chr5 43007232 43007404 -160078128 - MER91A DNA MER1_type -13 183 1 768 188 7 0 chr5 43007894 43008032 -160077500 - L1ME3A LINE L1 -8 6162 6024 266 230 103 73 chr5 43008329 43008533 -160076999 + L1ME4a LINE L1 5725 5934 -187 2151 127 0 0 chr5 43008538 43008830 -160076702 + AluSc SINE Alu 1 292 -17 352 339 27 27 chr5 43009885 43010071 -160075461 - MIR3 SINE MIR -3 205 20 1416 224 24 48 chr5 43010327 43010548 -160074984 - LTR16C LTR ERVL -5 486 274 995 169 30 82 chr5 43010548 43010779 -160074753 - MER20 DNA MER1_type 0 219 1 1416 224 24 48 chr5 43010779 43010887 -160074645 - LTR16C LTR ERVL -217 274 165 394 272 30 94 chr5 43011066 43011268 -160074264 - L2 LINE L2 -1 3312 3124 735 245 186 59 chr5 43011305 43011676 -160073856 + L2 LINE L2 2894 3311 -2 489 322 112 29 chr5 43011686 43012078 -160073454 - L2 LINE L2 -206 3066 2643 577 243 43 32 chr5 43012416 43012614 -160072918 + MLT1I LTR MaLR 1 209 -200 243 313 0 0 chr5 43012656 43012723 -160072809 + MIR SINE MIR 20 86 -122 1896 133 0 0 chr5 43012759 43013022 -160072510 - AluSx SINE Alu -16 296 34 735 176 7 37 chr5 43013043 43013179 -160072353 - FLAM_A SINE Alu -1 132 1 191 304 43 61 chr5 43014063 43014178 -160071354 + MIR SINE MIR 24 137 -71 24 0 0 0 chr5 43014550 43014574 -160070958 + AT_rich Low_complexity Low_complexity 1 24 0 345 289 39 56 chr5 43014574 43014754 -160070778 - MIR3 SINE MIR -2 206 30 216 271 40 13 chr5 43015166 43015317 -160070215 + (TA)n Simple_repeat Simple_repeat 1 155 0 276 224 0 0 chr5 43015616 43015683 -160069849 + (TATG)n Simple_repeat Simple_repeat 2 68 0 383 217 0 12 chr5 43016949 43017032 -160068500 + MIR3 SINE MIR 79 160 -48 412 171 89 57 chr5 43017227 43017321 -160068211 + L1MEc LINE L1 25 125 -6271 7445 120 48 18 chr5 43017321 43017945 -160067587 + Tigger3b DNA MER2_type 1 605 -2423 2241 112 3 0 chr5 43017945 43018240 -160067292 - AluSp SINE Alu -16 297 2 7445 120 48 18 chr5 43018240 43018810 -160066722 + Tigger3b DNA MER2_type 605 1231 0 412 171 89 57 chr5 43018810 43018838 -160066694 + L1MEc LINE L1 125 151 -6245 * 3420 232 53 7 chr5 43018833 43019708 -160065824 + L1MEc LINE L1 433 1347 -5049 1807 229 89 14 chr5 43019708 43020126 -160065406 - MLT1D LTR MaLR 0 505 55 1297 198 70 89 chr5 43020126 43020540 -160064992 + MLT1C LTR MaLR 1 406 -61 2252 218 97 16 chr5 43020540 43020770 -160064762 + L1MEc LINE L1 1388 1598 -4798 3840 115 2 6 chr5 43020770 43021283 -160064249 + MER9 LTR ERVK 1 511 0 2252 218 97 16 chr5 43021283 43021763 -160063769 + L1MEc LINE L1 1598 2156 -4240 369 296 12 29 chr5 43021852 43022024 -160063508 + L1MC4 LINE L1 7872 8040 -2 * 4906 147 46 1 chr5 43022016 43022849 -160062683 + L1MB2 LINE L1 5299 6168 -3 1130 256 25 45 chr5 43022870 43023304 -160062228 + L1ME1 LINE L1 5738 6162 -4 486 270 15 7 chr5 43023391 43023528 -160062004 + L1ME LINE L1 5531 5668 -453 583 320 89 32 chr5 43024144 43025050 -160060482 + L1MEc LINE L1 2322 3279 -2936 1932 121 4 0 chr5 43025418 43025683 -160059849 - AluY SINE Alu -10 301 36 782 276 58 33 chr5 43026746 43027115 -160058417 - LTR16C LTR ERVL 0 491 63 440 310 13 0 chr5 43029098 43029253 -160056279 + (TGG)n Simple_repeat Simple_repeat 2 158 0 365 283 134 21 chr5 43029339 43029503 -160056029 + MER5A DNA MER1_type 4 189 0 225 94 0 0 chr5 43029981 43030013 -160055519 + (CA)n Simple_repeat Simple_repeat 1 32 0 1106 263 113 14 chr5 43030114 43030497 -160055035 - MLT1G1 LTR MaLR 0 588 167 344 233 86 43 chr5 43031567 43031683 -160053849 - L2 LINE L2 -11 3302 3182 297 191 0 29 chr5 43031760 43031828 -160053704 + MLT1J1 LTR MaLR 23 88 -358 288 0 0 0 chr5 43032904 43032936 -160052596 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 594 214 148 22 chr5 43033019 43033201 -160052331 + MLT1J2 LTR MaLR 23 227 -223 1244 235 11 0 chr5 43033228 43033509 -160052023 - L1M4 LINE L1 -2448 3698 3415 559 289 31 44 chr5 43033528 43033772 -160051760 + MLT1J2 LTR MaLR 200 447 -3 315 301 64 45 chr5 43033776 43033932 -160051600 + L2 LINE L2 3114 3272 0 222 257 29 14 chr5 43034041 43034111 -160051421 + CT-rich Low_complexity Low_complexity 3 73 0 697 223 128 51 chr5 43034677 43034950 -160050582 + MLT1H LTR MaLR 256 549 0 334 219 0 55 chr5 43035016 43035089 -160050443 + MIR SINE MIR 8 76 -186 473 321 78 14 chr5 43035142 43035360 -160050172 - MIR SINE MIR -27 235 4 190 315 9 46 chr5 43037520 43037628 -160047904 - MIR SINE MIR -110 152 49 1148 241 101 21 chr5 43037844 43037974 -160047558 - LTR16C LTR ERVL 0 491 373 2069 184 31 6 chr5 43037974 43038327 -160047205 + MLT1A1 LTR MaLR 1 362 -3 1148 241 101 21 chr5 43038327 43038524 -160047008 - LTR16C LTR ERVL -118 373 138 244 207 72 81 chr5 43038614 43038725 -160046807 + MLT1L LTR MaLR 110 219 -396 1417 208 74 74 chr5 43038932 43039216 -160046316 - MLT1C LTR MaLR -4 463 177 2144 107 7 10 chr5 43039216 43039516 -160046016 - AluSx SINE Alu -13 299 1 1417 208 74 74 chr5 43039516 43039693 -160045839 - MLT1C LTR MaLR -289 178 2 782 271 104 54 chr5 43039967 43040284 -160045248 - L2 LINE L2 0 3313 2981 590 260 119 78 chr5 43041243 43041294 -160044238 - MLT1J LTR MaLR -28 483 436 1790 171 3 22 chr5 43041294 43041609 -160043923 - AluJb SINE Alu -1 311 3 590 260 119 78 chr5 43041609 43041942 -160043590 - MLT1J LTR MaLR -75 436 83 1824 61 52 0 chr5 43043001 43043231 -160042301 - AluY SINE Alu -4 307 66 197 254 63 48 chr5 43043240 43043303 -160042229 - L2 LINE L2 -2 3270 3207 187 294 65 22 chr5 43043418 43043510 -160042022 + MIR SINE MIR 62 157 -105 1994 123 0 20 chr5 43043717 43044018 -160041514 - AluSx SINE Alu -17 295 1 201 39 0 0 chr5 43044026 43044052 -160041480 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1014 111 14 0 chr5 43044053 43044197 -160041335 - AluSq SINE Alu -33 280 135 307 261 188 24 chr5 43044385 43044586 -160040946 - MIR SINE MIR -28 234 14 347 286 105 0 chr5 43045008 43045113 -160040419 + L2 LINE L2 3140 3255 -17 216 220 17 17 chr5 43046026 43046085 -160039447 - L2 LINE L2 -4 3309 3251 1074 90 159 0 chr5 43048819 43049052 -160036480 - MER7A DNA MER2_type -73 273 6 7402 106 26 4 chr5 43052545 43053663 -160031869 - Tigger1 DNA MER2_type -248 2170 1028 1733 161 68 0 chr5 43055355 43055722 -160029810 - MER57A LTR ERV1 -10 393 2 931 170 10 154 chr5 43055730 43056042 -160029490 - MER57A LTR ERV1 -131 272 6 2362 68 10 0 chr5 43056823 43057116 -160028416 - AluSp SINE Alu -4 309 14 1637 144 44 0 chr5 43057589 43057839 -160027693 + AluJo SINE Alu 24 284 -28 28 48 0 0 chr5 43057839 43057881 -160027651 + AT_rich Low_complexity Low_complexity 1 42 0 531 200 178 38 chr5 43058966 43059151 -160026381 + LOR1a LTR ERV1 233 443 -54 259 264 46 35 chr5 43059188 43059275 -160026257 - L2 LINE L2 -409 2904 2817 292 304 120 43 chr5 43059930 43060114 -160025418 + MIR SINE MIR 15 212 -50 386 226 199 53 chr5 43060259 43060485 -160025047 + LTR33A LTR ERVL 2 260 -263 2214 138 19 24 chr5 43060522 43060899 -160024633 + THE1C LTR MaLR 1 375 0 10360 121 47 23 chr5 43060899 43062268 -160023264 + THE1C-int LTR MaLR 1 1413 -167 1979 112 0 7 chr5 43062268 43062537 -160022995 - AluSq SINE Alu -14 299 33 10360 121 47 23 chr5 43062537 43062710 -160022822 + THE1C-int LTR MaLR 1413 1580 0 2231 129 27 22 chr5 43062712 43063083 -160022449 + THE1C LTR MaLR 3 375 0 286 276 71 41 chr5 43063093 43063289 -160022243 + LTR33A LTR ERVL 321 522 -1 207 0 0 0 chr5 43063364 43063387 -160022145 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4984 175 44 8 chr5 43063660 43065056 -160020476 + L1MB4 LINE L1 4730 6168 -12 476 186 17 5 chr5 43065056 43065663 -160019869 + (TA)n Simple_repeat Simple_repeat 1 614 0 231 255 0 0 chr5 43066816 43066863 -160018669 + L2 LINE L2 3213 3259 -13 682 270 89 62 chr5 43067183 43067487 -160018045 + MLT1L LTR MaLR 227 538 -77 185 263 12 0 chr5 43068817 43068844 -160016688 + (TA)n Simple_repeat Simple_repeat 1 26 -55 2079 144 61 0 chr5 43068844 43069171 -160016361 + MER7A DNA MER2_type 1 345 -1 185 263 12 0 chr5 43069171 43069223 -160016309 + (TA)n Simple_repeat Simple_repeat 26 81 0 315 239 43 34 chr5 43069246 43069363 -160016169 + L1ME LINE L1 5527 5644 -477 894 244 162 24 chr5 43069641 43070027 -160015505 + L1ME4a LINE L1 5597 6057 -64 1853 65 13 0 chr5 43070027 43070256 -160015276 - AluY SINE Alu 0 311 80 894 244 162 24 chr5 43070256 43070327 -160015205 + L1ME4a LINE L1 6057 6117 -4 428 219 119 53 chr5 43070941 43071092 -160014440 - MER5B DNA MER1_type -17 161 1 1978 59 0 59 chr5 43071612 43071911 -160013621 + AluY SINE Alu 29 311 0 716 298 34 21 chr5 43072167 43072405 -160013127 + MIR SINE MIR 22 262 0 209 318 79 60 chr5 43072475 43072727 -160012805 + L2 LINE L2 2830 3086 -186 253 217 17 17 chr5 43073181 43073241 -160012291 - MLT1K LTR MaLR -8 580 521 250 284 0 49 chr5 43073432 43073513 -160012019 - MER91C DNA MER1_type -33 107 31 219 226 57 0 chr5 43073782 43073835 -160011697 + (CATG)n Simple_repeat Simple_repeat 4 59 0 222 56 194 0 chr5 43073853 43073889 -160011643 - L2 LINE L2 -1 3271 3229 243 327 83 11 chr5 43074466 43074573 -160010959 + MIR SINE MIR 42 151 -81 * 257 273 0 0 chr5 43074568 43074623 -160010909 - L2 LINE L2 -15 3257 3203 201 219 55 41 chr5 43074635 43074708 -160010824 + MIR3 SINE MIR 122 195 -13 181 274 39 0 chr5 43074668 43074719 -160010813 + L2 LINE L2 2405 2457 -857 * 524 262 93 12 chr5 43075254 43075426 -160010106 + MIR SINE MIR 24 209 -53 248 263 131 0 chr5 43075525 43075624 -160009908 - MIR3 SINE MIR -6 202 91 264 260 26 13 chr5 43075765 43075842 -160009690 - MLT1L LTR MaLR -223 392 315 558 189 0 0 chr5 43075844 43075955 -160009577 + (TG)n Simple_repeat Simple_repeat 2 112 0 657 276 144 16 chr5 43075996 43076253 -160009279 - MLT1L LTR MaLR -325 290 1 191 305 34 0 chr5 43076496 43076555 -160008977 - L2 LINE L2 0 3313 3253 2410 97 0 6 chr5 43076648 43076959 -160008573 - AluSx SINE Alu -3 309 1 785 280 91 16 chr5 43077133 43077589 -160007943 + L1ME LINE L1 5197 5682 -439 22 35 0 0 chr5 43078154 43078183 -160007349 + AT_rich Low_complexity Low_complexity 1 29 0 740 268 31 18 chr5 43078340 43078568 -160006964 - MIR SINE MIR -4 258 28 183 211 35 18 chr5 43078559 43078616 -160006916 - MER5A DNA MER1_type -76 113 56 * 664 257 16 57 chr5 43078638 43078883 -160006649 - MIR SINE MIR -9 253 19 267 31 0 0 chr5 43079645 43079677 -160005855 + (CA)n Simple_repeat Simple_repeat 2 33 0 278 326 62 0 chr5 43080574 43080718 -160004814 - MIR SINE MIR -7 255 103 21 0 0 0 chr5 43081867 43081888 -160003644 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr5 43081962 43081991 -160003541 + (TG)n Simple_repeat Simple_repeat 2 30 0 266 0 29 0 chr5 43082158 43082192 -160003340 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 1470 18 0 0 chr5 43082241 43082404 -160003128 + AluY SINE Alu 149 311 0 2391 71 3 0 chr5 43082528 43082823 -160002709 + AluSp SINE Alu 14 309 -4 986 168 3 158 chr5 43083611 43083927 -160001605 + MER57A LTR ERV1 6 272 -131 2521 156 3 0 chr5 43083935 43084327 -160001205 + MER57A LTR ERV1 2 394 -9 296 111 50 212 chr5 43084379 43084478 -160001054 + LTR54 LTR ERV1 416 500 0 228 67 0 0 chr5 43084929 43084959 -160000573 + (CA)n Simple_repeat Simple_repeat 2 31 0 4703 120 3 3 chr5 43085985 43086620 -159998912 - MER41B LTR ERV1 0 635 1 230 191 0 32 chr5 43086903 43086966 -159998566 + GA-rich Low_complexity Low_complexity 4 64 0 240 371 48 0 chr5 43087002 43087107 -159998425 + MIR3 SINE MIR 60 169 -39 2316 112 0 6 chr5 43088001 43088315 -159997217 - AluSx SINE Alu 0 312 1 1662 150 36 4 chr5 43089120 43089373 -159996159 + AluJo SINE Alu 24 284 -28 28 48 0 0 chr5 43089373 43089415 -159996117 + AT_rich Low_complexity Low_complexity 1 42 0 207 369 86 20 chr5 43089650 43089848 -159995684 + L2 LINE L2 2902 3112 -160 212 246 35 0 chr5 43092134 43092191 -159993341 + (TATG)n Simple_repeat Simple_repeat 2 60 0 256 274 149 2 chr5 43092206 43092340 -159993192 - MIR3 SINE MIR -47 161 45 408 340 155 9 chr5 43092807 43093136 -159992396 - L2 LINE L2 -609 2705 2329 225 132 15 29 chr5 43094434 43094502 -159991030 + T-rich Low_complexity Low_complexity 5 71 0 280 235 38 30 chr5 43094521 43094653 -159990879 + T-rich Low_complexity Low_complexity 3 135 0 207 0 0 0 chr5 43094771 43094794 -159990738 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 679 237 95 68 chr5 43095085 43095495 -159990037 + HAL1b LINE L1 150 570 -778 310 145 65 0 chr5 43095501 43095563 -159989969 + L1MA9 LINE L1 6241 6306 -6 6431 229 96 18 chr5 43095879 43097642 -159987890 - L1ME2 LINE L1 -20 6144 4079 2199 97 3 26 chr5 43097642 43097951 -159987581 - AluSg SINE Alu -8 302 1 6431 229 96 18 chr5 43097951 43099014 -159986518 - L1ME2 LINE L1 -2085 4079 3100 200 221 156 66 chr5 43099060 43099182 -159986350 - L2 LINE L2 -1300 2014 1882 277 313 0 0 chr5 43099386 43099466 -159986066 + LTR67 LTR ERVL 102 181 -376 585 318 83 14 chr5 43099500 43099789 -159985743 + LTR67 LTR ERVL 244 552 -5 314 280 107 40 chr5 43099789 43099939 -159985593 + MIR SINE MIR 54 213 -49 180 0 0 0 chr5 43100493 43100513 -159985019 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr5 43100636 43100657 -159984875 + AT_rich Low_complexity Low_complexity 1 21 0 15678 128 14 38 chr5 43103399 43105878 -159979654 - Tigger1 DNA MER2_type 0 2418 1 685 335 35 14 chr5 43106560 43106850 -159978682 - MLT1L LTR MaLR -62 553 258 1793 213 94 31 chr5 43107044 43107557 -159977975 - MLT1H LTR MaLR -4 545 1 540 211 34 34 chr5 43107585 43107732 -159977800 + MIR SINE MIR 78 224 -38 2186 117 0 13 chr5 43107826 43108125 -159977407 + AluSx SINE Alu 1 295 -17 1069 177 0 0 chr5 43108732 43108896 -159976636 + Tigger3(Golem) DNA MER2_type 2863 3026 -3 232 226 32 0 chr5 43109183 43109245 -159976287 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 5996 30 1 0 chr5 43109297 43109955 -159975577 - L1PA4 LINE L1 -4 6151 5493 558 262 21 0 chr5 43110261 43110402 -159975130 + MIR SINE MIR 11 154 -108 480 295 92 12 chr5 43110871 43111044 -159974488 - MER91A DNA MER1_type -7 189 3 545 236 134 4 chr5 43111196 43111511 -159974021 + LTR16B LTR ERVL 11 388 -76 240 295 48 19 chr5 43111556 43111661 -159973871 - MARNA DNA Mariner -285 301 194 277 186 0 0 chr5 43111688 43111731 -159973801 - 5S rRNA rRNA -78 43 1 23 0 0 0 chr5 43112333 43112356 -159973176 + AT_rich Low_complexity Low_complexity 1 23 0 837 172 0 16 chr5 43112362 43112490 -159973042 + AluJb SINE Alu 2 126 -186 24 96 0 0 chr5 43112490 43112563 -159972969 + AT_rich Low_complexity Low_complexity 1 73 0 2313 179 58 32 chr5 43112572 43113017 -159972515 + MER74A LTR ERVL 14 477 -81 2388 96 3 0 chr5 43113017 43113318 -159972214 - AluSq SINE Alu -11 302 1 2313 179 58 32 chr5 43113318 43113403 -159972129 + MER74A LTR ERVL 477 558 0 280 274 0 105 chr5 43113739 43113863 -159971669 - MIR SINE MIR -32 230 120 252 250 118 0 chr5 43113881 43113949 -159971583 - MIR3 SINE MIR -11 197 122 840 189 4 0 chr5 43115926 43116161 -159969371 + (TG)n Simple_repeat Simple_repeat 1 236 0 21 0 0 0 chr5 43116330 43116351 -159969181 + AT_rich Low_complexity Low_complexity 1 21 0 257 311 227 20 chr5 43116447 43116698 -159968834 + L3b LINE CR1 1157 1459 -124 261 250 110 10 chr5 43116784 43116884 -159968648 - L1ME4a LINE L1 -1 6120 6011 21 57 0 0 chr5 43117436 43117471 -159968061 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr5 43117544 43117573 -159967959 + AT_rich Low_complexity Low_complexity 1 29 0 470 303 85 71 chr5 43118471 43119003 -159966529 - MLT1K LTR MaLR 0 588 50 437 301 79 15 chr5 43119144 43119410 -159966122 - L1ME4a LINE L1 -345 5776 5494 1869 167 3 7 chr5 43119523 43119823 -159965709 - AluJb SINE Alu -13 299 1 327 200 0 90 chr5 43120325 43120425 -159965107 + MIR SINE MIR 117 207 -55 6201 87 27 0 chr5 43120447 43121091 -159964441 + L1PA13 LINE L1 4132 4757 -1406 2144 118 3 0 chr5 43121091 43121388 -159964144 + AluSg SINE Alu 1 298 -12 6201 87 27 0 chr5 43121388 43122799 -159962733 + L1PA13 LINE L1 4757 6161 -2 692 187 43 7 chr5 43123173 43123312 -159962220 + MIR SINE MIR 46 189 -73 396 0 0 0 chr5 43123312 43123356 -159962176 + (TA)n Simple_repeat Simple_repeat 1 44 0 261 233 50 0 chr5 43123560 43123620 -159961912 + L2 LINE L2 3251 3313 0 25 31 0 0 chr5 43123708 43123740 -159961792 + AT_rich Low_complexity Low_complexity 1 32 0 216 97 0 0 chr5 43124107 43124138 -159961394 + (GAA)n Simple_repeat Simple_repeat 2 32 0 467 306 120 61 chr5 43125214 43125921 -159959611 - L2 LINE L2 -33 3280 2521 351 0 0 0 chr5 43126974 43127013 -159958519 + (CA)n Simple_repeat Simple_repeat 1 39 0 244 241 88 44 chr5 43127014 43127151 -159958381 + L1ME2 LINE L1 1385 1527 -5332 588 318 35 21 chr5 43127154 43127440 -159958092 + L1ME2 LINE L1 1655 1944 -5003 973 244 7 3 chr5 43127449 43127744 -159957788 + L1ME2 LINE L1 3578 3873 -3084 * 2841 226 89 20 chr5 43127736 43127909 -159957623 + L1ME2 LINE L1 4972 5132 -1843 653 216 8 0 chr5 43127909 43128034 -159957498 - FLAM_C SINE Alu -7 126 1 2841 226 89 20 chr5 43128034 43129674 -159955858 + L1ME2 LINE L1 5132 6966 -9 742 107 0 41 chr5 43130082 43130203 -159955329 + FLAM_C SINE Alu 23 138 -5 300 244 161 36 chr5 43130213 43130386 -159955146 + MIR SINE MIR 58 253 -9 301 319 140 32 chr5 43130999 43131278 -159954254 - L3 LINE CR1 -7 1570 1262 180 307 114 64 chr5 43131379 43131519 -159954013 + L2 LINE L2 3102 3248 -24 2219 246 89 26 chr5 43131606 43132323 -159953209 - MER21B LTR ERV1 -60 803 42 334 254 0 0 chr5 43132325 43132396 -159953136 - MER21B LTR ERV1 -774 89 19 277 226 54 32 chr5 43132394 43132487 -159953045 - MER21B LTR ERV1 -757 106 12 * 930 183 204 21 chr5 43132698 43132982 -159952550 - MER2 DNA MER2_type 0 345 10 569 296 139 7 chr5 43133134 43133414 -159952118 - L3 LINE CR1 -382 1195 879 279 257 138 18 chr5 43133684 43133793 -159951739 - MER5A DNA MER1_type -66 123 2 395 242 10 0 chr5 43133899 43133998 -159951534 - MER58 DNA MER1_type -3 2417 2318 1417 206 94 28 chr5 43134017 43134453 -159951079 + MLT1C LTR MaLR 1 465 -2 278 164 0 60 chr5 43134455 43134522 -159951010 - MER58 DNA MER1_type -244 97 35 222 299 206 10 chr5 43134636 43134830 -159950702 + L2 LINE L2 3080 3311 -2 411 304 76 23 chr5 43134859 43135030 -159950502 - MIR3 SINE MIR -26 182 3 1808 216 102 18 chr5 43135481 43136050 -159949482 - MLT1E3 LTR MaLR -7 617 1 226 303 33 16 chr5 43136195 43136317 -159949215 + LTR67 LTR ERVL 429 552 -5 187 369 15 0 chr5 43137632 43137697 -159947835 + MIR SINE MIR 8 73 -189 512 256 72 31 chr5 43137697 43137892 -159947640 - MLT1J2 LTR MaLR 0 450 248 646 150 14 68 chr5 43137934 43138081 -159947451 - MLT1J2 LTR MaLR -305 145 7 181 292 108 0 chr5 43138082 43138147 -159947385 + MIR SINE MIR 66 137 -125 1963 182 43 0 chr5 43138153 43138188 -159947344 - MLT2D LTR ERVL -8 406 374 393 22 0 0 chr5 43138188 43138234 -159947298 + (TG)n Simple_repeat Simple_repeat 1 46 0 1963 182 43 0 chr5 43138234 43138571 -159946961 - MLT2D LTR ERVL -40 374 18 282 265 15 0 chr5 43138592 43138660 -159946872 + MIR SINE MIR 188 256 -6 255 259 54 54 chr5 43138811 43138923 -159946609 - MIR SINE MIR -43 219 108 25 0 0 0 chr5 43139187 43139212 -159946320 + AT_rich Low_complexity Low_complexity 1 25 0 356 294 123 25 chr5 43139431 43139594 -159945938 + MIR3 SINE MIR 13 191 -17 183 286 0 20 chr5 43140490 43140539 -159944993 + MIR SINE MIR 74 121 -87 318 188 129 35 chr5 43140669 43140754 -159944778 - MIR SINE MIR -71 191 99 1639 169 47 51 chr5 43140754 43141146 -159944386 + MLT1B LTR MaLR 1 593 0 387 259 37 44 chr5 43141266 43141401 -159944131 + MER5B DNA MER1_type 26 159 -19 1986 240 53 35 chr5 43142236 43142874 -159942658 - L1ME3 LINE L1 -29 6133 5484 191 212 88 0 chr5 43143326 43143374 -159942158 + MIR SINE MIR 93 146 -116 482 347 61 66 chr5 43143401 43143966 -159941566 - L2 LINE L2 -19 3253 2694 256 258 21 21 chr5 43144003 43144100 -159941432 + A-rich Low_complexity Low_complexity 2 98 0 555 274 107 0 chr5 43144125 43144517 -159941015 + L1ME3A LINE L1 5045 5481 -683 1245 225 138 0 chr5 43144532 43144888 -159940644 + L1ME3A LINE L1 5591 5995 -175 263 261 14 0 chr5 43145839 43145901 -159939631 + MER112 DNA MER1_type 9 71 -189 421 179 199 13 chr5 43145901 43146052 -159939480 - MER104 DNA Tc2 -1 179 1 375 260 0 29 chr5 43146130 43146234 -159939298 + MER112 DNA MER1_type 154 254 -6 619 314 69 0 chr5 43147236 43147411 -159938121 + MER91A DNA MER1_type 1 187 -9 409 291 174 48 chr5 43148215 43148634 -159936898 + L2 LINE L2 2842 3313 0 330 257 10 30 chr5 43148679 43148780 -159936752 + MER94 DNA DNA 2 100 -34 380 281 115 31 chr5 43149334 43149526 -159936006 + MIR SINE MIR 46 253 -9 270 0 0 0 chr5 43149598 43149628 -159935904 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1697 171 3 14 chr5 43149630 43149916 -159935616 - AluJo SINE Alu -24 288 6 793 286 74 0 chr5 43149927 43150144 -159935388 + MIR SINE MIR 3 235 -27 1220 178 156 58 chr5 43150583 43150999 -159934533 - MSTB2 LTR MaLR 0 457 1 495 140 0 11 chr5 43151985 43152078 -159933454 + MER53 DNA DNA 92 183 -6 194 313 15 0 chr5 43152084 43152151 -159933381 - MIR SINE MIR -112 96 29 546 234 6 91 chr5 43152356 43152412 -159933120 - MER5B DNA MER1_type -1 177 118 2154 120 0 7 chr5 43152412 43152704 -159932828 + AluSx SINE Alu 10 299 -13 546 234 6 91 chr5 43152704 43152822 -159932710 - MER5B DNA MER1_type -60 118 18 189 0 0 0 chr5 43152912 43152933 -159932599 + (TG)n Simple_repeat Simple_repeat 2 22 0 439 280 118 32 chr5 43155718 43156022 -159929510 + L1MC4a LINE L1 5318 5395 -726 330 45 0 0 chr5 43156022 43156066 -159929466 + (CA)n Simple_repeat Simple_repeat 2 45 0 439 280 118 32 chr5 43156066 43156287 -159929245 + L1MC4a LINE L1 5395 5595 -526 2003 160 0 13 chr5 43159524 43159861 -159925671 - AluJo SINE Alu 0 334 2 410 213 193 66 chr5 43159925 43160122 -159925410 - MIR SINE MIR -28 234 13 192 287 138 11 chr5 43160215 43160309 -159925223 - L2 LINE L2 0 3313 3208 198 194 0 0 chr5 43160530 43160566 -159924966 - MIR3 SINE MIR -11 197 162 250 206 128 20 chr5 43161255 43161357 -159924175 - L1MC4 LINE L1 0 8042 7930 398 157 0 33 chr5 43161528 43161649 -159923883 + (TA)n Simple_repeat Simple_repeat 2 118 0 180 111 0 0 chr5 43161733 43161760 -159923772 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 378 57 0 0 chr5 43161781 43161834 -159923698 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1885 144 0 7 chr5 43161843 43162127 -159923405 - AluSx SINE Alu -30 282 1 473 272 40 13 chr5 43162155 43162379 -159923153 - L1ME2 LINE L1 -209 5955 5726 696 284 35 12 chr5 43162388 43162654 -159922878 - L1ME4a LINE L1 -184 5937 5668 379 263 124 29 chr5 43162699 43162836 -159922696 + MIR SINE MIR 7 156 -106 200 276 40 13 chr5 43162968 43163044 -159922488 + MIR SINE MIR 179 256 -6 248 250 0 11 chr5 43163046 43163138 -159922394 + (CA)n Simple_repeat Simple_repeat 2 92 0 263 26 51 0 chr5 43164893 43164932 -159920600 + (CGGAA)n Simple_repeat Simple_repeat 5 45 0 219 114 0 0 chr5 43164934 43164969 -159920563 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 1931 96 4 0 chr5 43165221 43165498 -159920034 - AluSx SINE Alu 0 310 33 290 274 115 18 chr5 43165669 43165782 -159919750 + MIR SINE MIR 19 142 -66 2196 116 0 0 chr5 43166499 43166793 -159918739 + AluSq SINE Alu 1 294 -19 228 312 64 46 chr5 43169755 43169864 -159915668 - L2 LINE L2 -12 3260 3150 421 264 8 40 chr5 43169915 43170040 -159915492 + MLT1L LTR MaLR 18 138 -477 2029 134 10 10 chr5 43170040 43170347 -159915185 - AluSx SINE Alu -5 307 1 796 84 19 0 chr5 43170362 43170469 -159915063 - AluY SINE Alu -2 309 201 410 307 40 27 chr5 43170471 43170621 -159914911 - MER5B DNA MER1_type -11 167 16 1045 276 66 39 chr5 43170627 43170985 -159914547 + MLT1L LTR MaLR 136 483 -132 736 253 6 6 chr5 43170985 43171163 -159914369 - MER5B DNA MER1_type 0 178 1 1045 276 66 39 chr5 43171163 43171211 -159914321 + MLT1L LTR MaLR 483 528 -87 899 238 5 5 chr5 43171211 43171400 -159914132 + MER5A DNA MER1_type 1 189 0 1045 276 66 39 chr5 43171400 43171459 -159914073 + MLT1L LTR MaLR 528 615 0 264 229 0 0 chr5 43172781 43172842 -159912690 - L1ME2 LINE L1 -10 6154 6094 22 0 0 0 chr5 43172857 43172879 -159912653 + AT_rich Low_complexity Low_complexity 1 22 0 186 279 0 0 chr5 43173487 43173530 -159912002 - MIR3 SINE MIR -48 160 118 294 95 0 0 chr5 43174148 43174190 -159911342 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 666 87 0 0 chr5 43175348 43175440 -159910092 + AluSc SINE Alu 218 309 0 627 281 54 50 chr5 43176808 43177050 -159908482 + MIR SINE MIR 20 262 0 201 129 0 0 chr5 43177087 43177118 -159908414 + (CA)n Simple_repeat Simple_repeat 1 31 0 1832 153 7 0 chr5 43177171 43177452 -159908080 + AluSx SINE Alu 1 283 -29 205 274 20 0 chr5 43177519 43177570 -159907962 - L2 LINE L2 -10 3262 3211 208 127 36 0 chr5 43178792 43178847 -159906685 + (CA)n Simple_repeat Simple_repeat 2 58 0 2973 85 8 8 chr5 43178892 43179267 -159906265 + THE1C LTR MaLR 1 375 0 358 245 118 10 chr5 43179305 43179407 -159906125 - L2 LINE L2 0 3272 3160 449 231 52 58 chr5 43179561 43179637 -159905895 - MIR SINE MIR -12 250 175 192 40 0 0 chr5 43179637 43179662 -159905870 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2271 106 0 0 chr5 43179664 43179957 -159905575 - AluSc SINE Alu -16 293 1 449 231 52 58 chr5 43179957 43180050 -159905482 - MIR SINE MIR -88 174 79 4422 116 65 9 chr5 43180226 43180578 -159904954 + L1PB1 LINE L1 5430 5761 -390 207 0 0 0 chr5 43180578 43180601 -159904931 + (TA)n Simple_repeat Simple_repeat 2 24 0 4422 116 65 9 chr5 43180601 43180929 -159904603 + L1PB1 LINE L1 5761 6148 -3 180 0 0 0 chr5 43181920 43181940 -159903592 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1111 255 61 21 chr5 43182816 43183142 -159902390 + L1ME4a LINE L1 5528 5866 -255 268 325 130 0 chr5 43184912 43185035 -159900497 + L2 LINE L2 3171 3309 -4 372 284 55 2 chr5 43186132 43186244 -159899288 - MIR SINE MIR -87 121 2 1719 190 46 9 chr5 43186398 43186725 -159898807 - MER58B DNA MER1_type 0 341 3 2208 127 3 0 chr5 43187416 43187716 -159897816 - AluSx SINE Alu -9 303 3 358 267 8 53 chr5 43188968 43189099 -159896433 + L2 LINE L2 2935 3059 -213 245 327 45 0 chr5 43189620 43189730 -159895802 + LTR16A1 LTR ERVL 179 293 -164 267 242 16 0 chr5 43189731 43189793 -159895739 - MIR SINE MIR -160 102 40 634 311 40 13 chr5 43189998 43190223 -159895309 + MIR SINE MIR 20 250 -12 984 247 57 4 chr5 43192528 43192755 -159892777 - LTR16A LTR ERVL 0 450 212 222 317 164 0 chr5 43192866 43192970 -159892562 - L2 LINE L2 -11 3302 3182 299 250 16 0 chr5 43193559 43193623 -159891909 + LTR67 LTR ERVL 491 555 -2 303 292 90 35 chr5 43193629 43193773 -159891759 - MIR SINE MIR -87 175 24 233 291 27 36 chr5 43195719 43195829 -159889703 - L1ME4a LINE L1 -12 6109 6001 480 347 144 21 chr5 43195860 43196320 -159889212 - L2 LINE L2 -62 3210 2695 571 199 23 0 chr5 43196382 43196553 -159888979 + GA-rich Low_complexity Low_complexity 3 177 0 213 39 0 0 chr5 43197352 43197378 -159888154 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 315 304 36 14 chr5 43197514 43197652 -159887880 + MER112 DNA MER1_type 38 178 -82 2631 164 118 23 chr5 43197674 43198240 -159887292 + L1ME3A LINE L1 5550 6169 -1 263 257 40 14 chr5 43198240 43198314 -159887218 + MER112 DNA MER1_type 178 253 -7 21 0 0 0 chr5 43198360 43198381 -159887151 + AT_rich Low_complexity Low_complexity 1 21 0 2419 99 0 0 chr5 43250445 43250749 -159834783 - AluSq SINE Alu -9 304 1 464 139 7 115 chr5 43250749 43250773 -159834759 - L1 LINE L1 -853 5293 5268 2114 188 11 3 chr5 43250773 43251135 -159834397 - MLT1A1 LTR MaLR 0 365 1 464 139 7 115 chr5 43251135 43251247 -159834285 - L1 LINE L1 -878 5268 5155 231 279 41 68 chr5 43251329 43251403 -159834129 + L1ME LINE L1 5547 5617 -504 972 206 38 5 chr5 43251403 43251612 -159833920 + MER20 DNA MER1_type 1 216 -3 231 279 41 68 chr5 43251612 43251684 -159833848 + L1ME LINE L1 5617 5689 -432 273 338 15 0 chr5 43251751 43251884 -159833648 + L1ME LINE L1 5636 5770 -351 202 261 227 0 chr5 43252477 43252565 -159832967 - L2 LINE L2 -1 3312 3205 253 251 91 63 chr5 43252565 43252740 -159832792 + L1ME LINE L1 5706 5885 -236 2296 65 0 4 chr5 43252817 43253096 -159832436 + AluY SINE Alu 1 278 -33 465 34 0 0 chr5 43253096 43253155 -159832377 + (CA)n Simple_repeat Simple_repeat 2 60 0 1001 136 101 0 chr5 43253155 43253324 -159832208 + MER46A DNA MER2_type 2 187 -49 195 100 0 0 chr5 43253353 43253383 -159832149 + (CA)n Simple_repeat Simple_repeat 2 31 0 498 274 157 56 chr5 43254626 43254983 -159830549 + Charlie8 DNA MER1_type 38 430 -1987 471 329 102 5 chr5 43256080 43256296 -159829236 - MIR SINE MIR -6 256 20 274 283 113 22 chr5 43256725 43256878 -159828654 + MIR SINE MIR 31 191 -41 207 69 0 0 chr5 43257353 43257382 -159828150 + (TG)n Simple_repeat Simple_repeat 2 30 0 430 270 0 0 chr5 43257603 43257692 -159827840 + MER119 DNA MER1_type 5 93 -490 2280 106 62 14 chr5 43257712 43258070 -159827462 - THE1C LTR MaLR 0 375 1 603 213 16 0 chr5 43258077 43258204 -159827328 + MER119 DNA MER1_type 454 582 -1 642 122 99 41 chr5 43259252 43259424 -159826108 - Charlie7 DNA MER1_type -2 2610 2429 333 248 59 20 chr5 43259406 43259507 -159826025 - Charlie7 DNA MER1_type -2507 105 1 * 246 286 126 17 chr5 43259524 43259643 -159825889 + MIR SINE MIR 19 150 -58 2405 83 0 7 chr5 43259645 43259946 -159825586 + AluSq SINE Alu 1 299 -14 342 286 0 0 chr5 43260005 43260101 -159825431 + MER20B DNA MER1_type 103 202 -17 297 193 136 23 chr5 43260403 43260491 -159825041 - MIR SINE MIR -88 120 23 2353 101 10 0 chr5 43260724 43261021 -159824511 + AluSq SINE Alu 2 301 -12 1037 271 132 8 chr5 43261117 43261504 -159824028 - MLT1J LTR MaLR -38 473 39 385 210 50 0 chr5 43261697 43261797 -159823735 + MIR SINE MIR 93 197 -65 412 317 63 0 chr5 43262906 43263048 -159822484 + MIR SINE MIR 51 201 -61 636 299 122 58 chr5 43263787 43264566 -159820966 - L2 LINE L2 0 3272 2544 198 0 0 0 chr5 43264566 43264588 -159820944 + (GA)n Simple_repeat Simple_repeat 1 22 0 636 299 122 58 chr5 43264588 43265218 -159820314 - L2 LINE L2 -728 2544 1757 759 218 35 11 chr5 43265386 43265560 -159819972 - MER5B DNA MER1_type 0 178 1 413 275 104 22 chr5 43265947 43266129 -159819403 - MIR SINE MIR -54 208 12 375 23 0 0 chr5 43266283 43266327 -159819205 + (CA)n Simple_repeat Simple_repeat 2 45 0 195 231 0 19 chr5 43266327 43266379 -159819153 + MER5A DNA MER1_type 136 186 -3 348 77 0 0 chr5 43266469 43266521 -159819011 + (CA)n Simple_repeat Simple_repeat 2 53 0 206 306 106 60 chr5 43267297 43267532 -159818000 - L2 LINE L2 -79 3193 2948 2402 97 0 0 chr5 43267660 43267958 -159817574 - AluSg SINE Alu -10 300 3 237 311 85 61 chr5 43267995 43268159 -159817373 - L2 LINE L2 -182 3090 2923 2432 85 0 0 chr5 43268921 43269215 -159816317 + AluSg SINE Alu 2 295 -15 973 297 82 28 chr5 43270230 43270691 -159814841 - MLT1K LTR MaLR -70 518 33 2256 105 0 3 chr5 43271000 43271294 -159814238 + AluSx SINE Alu 1 293 -19 478 206 147 18 chr5 43271582 43271752 -159813780 - LTR16C LTR ERVL -2 489 298 486 269 97 19 chr5 43272284 43272327 -159813205 - MER115 DNA AcHobo -11 682 644 2213 112 3 0 chr5 43272327 43272613 -159812919 - AluSq SINE Alu -26 287 1 486 269 97 19 chr5 43272613 43272785 -159812747 - MER115 DNA AcHobo -49 644 450 194 307 45 23 chr5 43272805 43272893 -159812639 + MIR SINE MIR 56 145 -117 311 347 19 7 chr5 43272986 43273123 -159812409 - MIR SINE MIR -67 141 19 1235 181 19 5 chr5 43273414 43273630 -159811902 + MLT1A1 LTR MaLR 4 222 -143 1293 166 9 40 chr5 43273732 43273955 -159811577 - MER20 DNA MER1_type -2 217 2 237 286 71 18 chr5 43274467 43274579 -159810953 + MIR3 SINE MIR 82 199 -9 435 316 35 12 chr5 43274642 43274813 -159810719 + L2 LINE L2 2635 2809 -505 254 242 48 81 chr5 43275325 43275511 -159810021 - LTR28 LTR ERV1 -11 1009 830 989 257 123 49 chr5 43275516 43276026 -159809506 - LTR1B LTR ERV1 -223 603 56 4473 93 5 19 chr5 43276144 43276934 -159808598 - L1PA14 LINE L1 -301 5860 5083 2328 116 0 0 chr5 43276979 43277289 -159808243 - AluSq SINE Alu -3 310 1 225 0 0 0 chr5 43277292 43277317 -159808215 + (T)n Simple_repeat Simple_repeat 1 25 0 2204 122 3 7 chr5 43277521 43277825 -159807707 - AluSp SINE Alu -10 303 1 1194 159 9 40 chr5 43277825 43278052 -159807480 - AluJo SINE Alu -8 304 85 244 274 141 47 chr5 43278457 43278734 -159806798 + L2 LINE L2 1611 1913 -1401 201 74 0 0 chr5 43278838 43278865 -159806667 + (GA)n Simple_repeat Simple_repeat 2 28 0 207 100 0 0 chr5 43279098 43279128 -159806404 + (CTCA)n Simple_repeat Simple_repeat 1 30 0 181 250 0 0 chr5 43279131 43279171 -159806361 - L2 LINE L2 -12 3301 3262 864 178 0 0 chr5 43280042 43280177 -159805355 - FLAM_C SINE Alu -7 136 2 433 347 75 14 chr5 43280870 43281340 -159804192 - L2 LINE L2 -25 3288 2780 277 263 13 0 chr5 43282035 43282111 -159803421 + LTR33 LTR ERVL 437 513 -8 1075 169 245 11 chr5 43283429 43283702 -159801830 + MER58B DNA MER1_type 1 337 -4 618 217 68 28 chr5 43283931 43284215 -159801317 + LTR48B LTR ERV1 1 298 -346 478 204 72 88 chr5 43284265 43284446 -159801086 + LTR48B LTR ERV1 467 644 0 316 214 36 86 chr5 43284796 43284936 -159800596 - MIR SINE MIR -109 153 21 192 77 0 0 chr5 43285860 43285886 -159799646 + (TTCC)n Simple_repeat Simple_repeat 4 29 0 571 246 123 65 chr5 43286115 43286184 -159799348 - L2 LINE L2 0 3313 3249 2080 94 0 69 chr5 43286184 43286504 -159799028 + AluSx SINE Alu 1 298 -14 571 246 123 65 chr5 43286504 43286657 -159798875 - L2 LINE L2 -64 3249 3106 1863 129 66 0 chr5 43286657 43286928 -159798604 + AluJb SINE Alu 1 289 -23 571 246 123 65 chr5 43286928 43287103 -159798429 - L2 LINE L2 -207 3106 2892 2233 183 38 115 chr5 43288481 43288710 -159796822 + L1MA1 LINE L1 5104 5349 -953 3448 145 28 76 chr5 43288710 43289436 -159796096 + LTR8 LTR ERV1 1 691 0 2233 183 38 115 chr5 43289436 43290234 -159795298 + L1MA1 LINE L1 5349 6029 -273 * 3623 149 5 7 chr5 43289706 43290295 -159795237 + L1PB4 LINE L1 5493 6080 -76 401 288 82 0 chr5 43290342 43290512 -159795020 + MIR SINE MIR 52 235 -27 25 95 0 0 chr5 43290566 43290640 -159794892 + AT_rich Low_complexity Low_complexity 1 74 0 939 152 0 0 chr5 43290971 43291109 -159794423 - AluJo SINE Alu -174 138 1 485 202 39 47 chr5 43291559 43291688 -159793844 - MIR3 SINE MIR -6 202 75 425 256 56 12 chr5 43292548 43292708 -159792824 + MIR SINE MIR 21 187 -75 258 32 0 0 chr5 43292905 43292936 -159792596 + (TG)n Simple_repeat Simple_repeat 2 32 0 183 184 0 0 chr5 43294999 43295037 -159790495 + (TG)n Simple_repeat Simple_repeat 2 39 0 687 234 5 31 chr5 43296634 43296826 -159788706 - L2 LINE L2 0 3313 3127 259 246 29 0 chr5 43296889 43296958 -159788574 - L2 LINE L2 -348 2924 2854 208 164 16 82 chr5 43297039 43297100 -159788432 - L2 LINE L2 -8 3264 3208 44110 32 21 1 chr5 43297202 43303236 -159782296 - L1PA3 LINE L1 0 6155 1 350 21 21 0 chr5 43303395 43303442 -159782090 + (TG)n Simple_repeat Simple_repeat 1 48 0 491 302 25 20 chr5 43304035 43304237 -159781295 - L3 LINE CR1 -125 1452 1250 2225 119 3 0 chr5 43304295 43304598 -159780934 + AluSx SINE Alu 1 304 -8 29 0 0 0 chr5 43304598 43304627 -159780905 + AT_rich Low_complexity Low_complexity 1 29 0 2080 89 65 14 chr5 43304796 43305089 -159780443 - AluSx SINE Alu -4 308 1 967 177 6 11 chr5 43305097 43305272 -159780260 - FRAM SINE Alu -2 174 1 288 298 137 3 chr5 43306577 43306737 -159778795 + MIR SINE MIR 37 215 -47 404 280 33 23 chr5 43308234 43308407 -159777125 + MIR SINE MIR 20 190 -62 196 305 0 0 chr5 43308899 43308958 -159776574 - L2 LINE L2 -213 3059 3001 1223 188 131 25 chr5 43308963 43309271 -159776261 + MLT1A1 LTR MaLR 1 374 0 1923 49 4 8 chr5 43309294 43309538 -159775994 + L1PA7 LINE L1 5910 6152 -2 550 250 64 17 chr5 43310231 43310403 -159775129 + MIR3 SINE MIR 1 180 -28 194 337 12 47 chr5 43310422 43310508 -159775024 + L3b LINE CR1 1370 1452 -131 591 317 31 9 chr5 43310562 43310786 -159774746 - MIR SINE MIR -30 232 4 636 257 0 0 chr5 43311079 43311223 -159774309 - MIR SINE MIR -10 252 109 279 0 0 0 chr5 43311778 43311809 -159773723 + (TG)n Simple_repeat Simple_repeat 2 32 0 586 279 91 72 chr5 43312906 43313432 -159772100 + L1MD3 LINE L1 5324 5619 -551 22 56 0 0 chr5 43313729 43313765 -159771767 + AT_rich Low_complexity Low_complexity 1 36 0 291 167 17 0 chr5 43313771 43313831 -159771701 - MIR3 SINE MIR -11 197 137 3457 189 11 29 chr5 43313858 43314620 -159770912 + L1MB1 LINE L1 3295 4042 -2104 3345 181 22 40 chr5 43314622 43314891 -159770641 + L1MB1 LINE L1 5264 5536 -632 341 109 18 0 chr5 43314891 43314946 -159770586 + HSMAR2 DNA Mariner 647 702 -600 3345 181 22 40 chr5 43314946 43315569 -159769963 + L1MB1 LINE L1 5536 6163 -5 222 340 10 19 chr5 43317432 43317535 -159767997 + MER5A DNA MER1_type 88 189 0 463 237 40 40 chr5 43318097 43318249 -159767283 + MIR SINE MIR 35 186 -76 2250 125 0 0 chr5 43318752 43319057 -159766475 + AluSx SINE Alu 1 305 -7 430 251 106 22 chr5 43319325 43319516 -159766016 + MIR SINE MIR 3 206 -56 254 188 0 87 chr5 43319561 43319630 -159765902 - MLT1I LTR MaLR 0 409 347 548 216 18 0 chr5 43319761 43319872 -159765660 - MLT1I LTR MaLR -270 139 27 981 235 5 5 chr5 43320657 43320870 -159764662 - MIR SINE MIR -26 236 24 1509 139 118 113 chr5 43321819 43322244 -159763288 - MSTA LTR MaLR -1 427 1 205 344 50 53 chr5 43322599 43322919 -159762613 + L2 LINE L2 2163 2481 -833 361 302 161 10 chr5 43323027 43323219 -159762313 + MIR SINE MIR 36 256 -6 343 336 26 17 chr5 43323308 43323424 -159762108 - L2 LINE L2 -13 3259 3143 183 353 68 48 chr5 43323429 43323636 -159761896 + L2 LINE L2 2648 2858 -456 402 195 41 81 chr5 43323896 43324019 -159761513 - LTR33 LTR ERVL -27 494 377 1973 145 3 10 chr5 43324148 43324445 -159761087 + AluSx SINE Alu 1 295 -17 314 344 34 46 chr5 43324623 43325096 -159760436 + HERVL LTR ERVL 1216 1724 -4040 437 301 161 18 chr5 43326091 43326434 -159759098 + HERVL LTR ERVL 1893 2273 -3381 2449 74 3 0 chr5 43326515 43326825 -159758707 + AluY SINE Alu 1 311 0 343 221 0 0 chr5 43326856 43326924 -159758608 + MIR SINE MIR 137 204 -58 384 303 69 29 chr5 43327089 43327264 -159758268 + HERVL LTR ERVL 2847 3028 -2736 806 308 54 7 chr5 43327398 43327674 -159757858 + HERVL LTR ERVL 3191 3479 -2285 1248 289 104 27 chr5 43327690 43328312 -159757220 + HERVL LTR ERVL 3396 4065 -1699 455 317 60 53 chr5 43328392 43328673 -159756859 + HERVL LTR ERVL 4305 4587 -1177 842 224 130 27 chr5 43328759 43328982 -159756550 + MLT1I LTR MaLR 99 344 -65 470 194 14 22 chr5 43329026 43329165 -159756367 + CT-rich Low_complexity Low_complexity 1 138 0 403 272 78 32 chr5 43329436 43329653 -159755879 + LTR33A LTR ERVL 297 523 0 239 240 30 27 chr5 43330235 43330320 -159755212 - MIR SINE MIR -101 107 22 642 297 35 0 chr5 43331370 43331572 -159753960 - MIR SINE MIR 0 262 54 8181 146 13 21 chr5 43332688 43333551 -159751981 + HSMAR2 DNA Mariner 1 851 -451 1816 109 31 4 chr5 43333551 43333807 -159751725 + AluSc SINE Alu 28 290 -19 8181 146 13 21 chr5 43333807 43334255 -159751277 + HSMAR2 DNA Mariner 851 1301 -1 203 323 10 21 chr5 43334532 43334628 -159750904 + CT-rich Low_complexity Low_complexity 3 97 0 493 260 24 4 chr5 43335196 43335349 -159750183 - MLT1H LTR MaLR -265 170 21 219 283 28 75 chr5 43335598 43335704 -159749828 + MIR3 SINE MIR 87 187 -21 421 231 16 33 chr5 43335935 43336056 -159749476 + MLT1I LTR MaLR 273 391 -18 221 341 72 0 chr5 43336145 43336254 -159749278 + MIR SINE MIR 38 152 -67 278 351 44 0 chr5 43336381 43336495 -159749037 - MIR SINE MIR -78 184 66 276 296 217 17 chr5 43337140 43337255 -159748277 + MER5A DNA MER1_type 46 183 -6 919 240 81 0 chr5 43337327 43337548 -159747984 + L1MB1 LINE L1 5925 6163 -5 250 178 55 0 chr5 43337628 43337701 -159747831 + CT-rich Low_complexity Low_complexity 4 80 0 718 272 135 30 chr5 43338430 43338916 -159746616 + L2 LINE L2 2750 3282 -31 413 254 123 0 chr5 43338944 43339066 -159746466 - MIR SINE MIR -20 242 106 1258 217 14 0 chr5 43339132 43339353 -159746179 + MER58A DNA MER1_type 1 224 0 224 373 29 0 chr5 43339502 43339604 -159745928 + MIR SINE MIR 33 137 -71 195 162 0 0 chr5 43339620 43339657 -159745875 + (TAA)n Simple_repeat Simple_repeat 1 37 0 1134 273 50 43 chr5 43339840 43340239 -159745293 + MLT1I LTR MaLR 6 407 -2 4070 59 0 0 chr5 43340832 43341000 -159744532 + L1PA12 LINE L1 5329 5487 -681 4070 108 0 2 chr5 43341000 43341547 -159743985 + L1PA12 LINE L1 5621 6168 0 4070 59 0 0 chr5 43341547 43341587 -159743945 + L1PA12 LINE L1 5487 6168 0 1294 195 79 41 chr5 43342814 43343157 -159742375 - MLT1A1 LTR MaLR 0 365 10 30 0 0 0 chr5 43343321 43343351 -159742181 + AT_rich Low_complexity Low_complexity 1 30 0 274 352 38 0 chr5 43344325 43344430 -159741102 - MIR SINE MIR -68 140 32 1371 121 97 0 chr5 43344454 43344661 -159740871 + MER30 DNA MER1_type 4 230 0 388 319 39 44 chr5 43346434 43346616 -159738916 - MER5A DNA MER1_type -2 187 7 222 306 0 14 chr5 43346897 43346969 -159738563 + MIR3 SINE MIR 90 160 -48 2038 117 13 7 chr5 43347096 43347394 -159738138 + AluSg SINE Alu 1 300 -10 846 256 22 22 chr5 43347435 43347658 -159737874 + MLT1G1 LTR MaLR 3 225 -370 1006 307 95 34 chr5 43347685 43348326 -159737206 - L2 LINE L2 -556 2758 2079 1701 200 10 4 chr5 43348331 43348720 -159736812 - MER39 LTR ERV1 -7 700 271 365 335 85 18 chr5 43348802 43349083 -159736449 - L2 LINE L2 -1586 1728 1429 17588 33 0 2 chr5 43349550 43351060 -159734472 + L1PA4 LINE L1 3387 4881 -1274 2357 89 3 0 chr5 43351060 43351362 -159734170 + AluY SINE Alu 1 303 -8 17588 33 0 2 chr5 43351362 43352629 -159732903 + L1PA4 LINE L1 4881 6149 -6 207 191 0 43 chr5 43352759 43352806 -159732726 + GA-rich Low_complexity Low_complexity 1 45 0 195 186 0 0 chr5 43353099 43353142 -159732390 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1683 144 107 0 chr5 43353211 43353474 -159732058 - AluSp SINE Alu -22 291 1 1504 176 37 34 chr5 43353733 43354028 -159731504 - AluJo SINE Alu -16 296 1 511 263 126 17 chr5 43354226 43354401 -159731131 + MIR SINE MIR 9 202 -60 231 177 81 0 chr5 43354465 43354527 -159731005 + GA-rich Low_complexity Low_complexity 1 67 0 21 0 0 0 chr5 43355288 43355309 -159730223 + AT_rich Low_complexity Low_complexity 1 21 0 870 182 113 86 chr5 43356630 43356921 -159728611 + MLT1J2 LTR MaLR 7 305 -145 1659 204 76 39 chr5 43356921 43356979 -159728553 + Charlie4a DNA MER1_type 21 75 -1886 2458 76 0 0 chr5 43356979 43357281 -159728251 + AluY SINE Alu 1 302 -9 1659 204 76 39 chr5 43357281 43357684 -159727848 + Charlie4a DNA MER1_type 75 499 -9 322 244 16 114 chr5 43357699 43357822 -159727710 + MLT1J2 LTR MaLR 267 377 -73 229 265 168 34 chr5 43358947 43359270 -159726262 - L1ME4a LINE L1 -114 6007 5650 21 0 0 0 chr5 43359329 43359350 -159726182 + AT_rich Low_complexity Low_complexity 1 21 0 382 259 19 71 chr5 43359683 43359901 -159725631 + MIR3 SINE MIR 2 251 -11 343 350 50 0 chr5 43359946 43360066 -159725466 + L2 LINE L2 3187 3312 -1 271 279 0 15 chr5 43360577 43360645 -159724887 + MIR3 SINE MIR 139 205 -3 2473 123 18 39 chr5 43361564 43361946 -159723586 + THE1C LTR MaLR 1 374 -1 11483 107 9 29 chr5 43361947 43363559 -159721973 + THE1C-int LTR MaLR 1 1580 0 2523 114 13 42 chr5 43363559 43363945 -159721587 + THE1C LTR MaLR 1 375 0 1140 219 37 0 chr5 43364040 43364255 -159721277 + MER58A DNA MER1_type 2 224 0 1706 176 24 7 chr5 43364504 43364799 -159720733 - AluJo SINE Alu -10 302 3 201 354 53 18 chr5 43364981 43365094 -159720438 - MIR SINE MIR -95 167 51 234 0 0 0 chr5 43365176 43365202 -159720330 + (T)n Simple_repeat Simple_repeat 1 26 0 1334 270 94 11 chr5 43366520 43366894 -159718638 - MLT1I LTR MaLR -4 405 1 721 249 13 16 chr5 43367026 43367203 -159718329 - MER5B DNA MER1_type -4 185 1 407 279 16 39 chr5 43367211 43367234 -159718298 + MIR3 SINE MIR 19 41 -167 2075 114 3 20 chr5 43367234 43367582 -159717950 - AluSq SINE Alu 0 313 3 407 279 16 39 chr5 43367582 43367732 -159717800 + MIR3 SINE MIR 41 193 -15 257 223 116 33 chr5 43368776 43368897 -159716635 + L1ME4a LINE L1 5984 6114 -7 439 221 21 0 chr5 43368910 43369005 -159716527 + MIR SINE MIR 84 180 -82 296 272 0 12 chr5 43369008 43369089 -159716443 + MER116 DNA Mariner 1 80 0 622 230 63 11 chr5 43369246 43369420 -159716112 - L1ME1 LINE L1 -49 6117 5935 1990 123 0 3 chr5 43369781 43370105 -159715427 + AluSx SINE Alu 1 323 0 303 341 0 0 chr5 43370687 43370816 -159714716 + MIR SINE MIR 10 138 -124 292 264 60 54 chr5 43370847 43371014 -159714518 + L2 LINE L2 2897 3064 -208 1071 281 12 0 chr5 43371099 43371352 -159714180 - MIR SINE MIR -2 260 5 477 264 200 0 chr5 43371387 43371542 -159713990 - MER5A DNA MER1_type 0 189 4 720 191 79 11 chr5 43371574 43371752 -159713780 - Charlie1b DNA MER1_type -15 508 319 * 820 255 10 10 chr5 43371748 43371944 -159713588 - Charlie1b DNA MER1_type -327 196 1 293 0 27 0 chr5 43372110 43372147 -159713385 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2132 67 10 67 chr5 43372149 43372449 -159713083 - AluSp SINE Alu -30 283 1 321 203 29 14 chr5 43373120 43373189 -159712343 - L3 LINE CR1 -3 1574 1505 * 400 194 61 0 chr5 43373177 43373275 -159712257 + MER5A DNA MER1_type 9 112 -77 952 219 6 6 chr5 43373460 43373638 -159711894 + MER5B DNA MER1_type 1 178 0 2395 94 10 0 chr5 43374659 43374966 -159710566 + AluSg SINE Alu 1 310 0 24 53 0 0 chr5 43375020 43375058 -159710474 + AT_rich Low_complexity Low_complexity 1 38 0 2790 148 40 23 chr5 43375382 43375861 -159709671 - L1MB1 LINE L1 0 6168 5682 28 0 0 0 chr5 43376183 43376211 -159709321 + AT_rich Low_complexity Low_complexity 1 28 0 651 167 28 0 chr5 43376489 43376597 -159708935 - LTR8 LTR ERV1 -107 584 474 184 330 170 0 chr5 43377128 43377240 -159708292 - MIR3 SINE MIR -1 207 77 1156 156 19 28 chr5 43378171 43378383 -159707149 + L1PA16 LINE L1 5947 6156 -10 371 0 68 0 chr5 43378695 43378754 -159706778 + (TG)n Simple_repeat Simple_repeat 2 64 0 392 335 28 16 chr5 43378925 43379107 -159706425 - MIR3 SINE MIR -15 193 10 2029 138 7 13 chr5 43379805 43380109 -159705423 - AluSq SINE Alu -11 302 1 272 202 70 70 chr5 43380119 43380233 -159705299 - L1MC/D LINE L1 -1988 5820 5707 3195 234 61 17 chr5 43380844 43381902 -159703630 + L1ME3A LINE L1 4962 6077 -93 203 382 54 43 chr5 43382067 43382253 -159703279 + L2 LINE L2 3073 3260 -12 479 234 42 72 chr5 43382377 43382544 -159702988 + L1ME3A LINE L1 6003 6164 -6 717 291 113 17 chr5 43382575 43382929 -159702603 + L1MC4a LINE L1 5477 5864 -1944 211 197 0 82 chr5 43384025 43384086 -159701446 - MIR SINE MIR -137 71 16 691 268 112 22 chr5 43384101 43384325 -159701207 + MIR SINE MIR 18 261 -1 275 370 54 0 chr5 43384438 43384641 -159700891 + L3 LINE CR1 1357 1570 -7 21 36 0 0 chr5 43388384 43388412 -159697120 + AT_rich Low_complexity Low_complexity 1 28 0 831 293 63 0 chr5 43389047 43389286 -159696246 - MIR SINE MIR -1 261 8 234 243 206 28 chr5 43389771 43389878 -159695654 - MIR SINE MIR -62 146 21 3429 210 69 43 chr5 43390063 43390887 -159694645 - L1ME1 LINE L1 -5 6161 5282 2014 147 0 0 chr5 43390887 43391187 -159694345 + AluSx SINE Alu 2 301 -11 3429 210 69 43 chr5 43391187 43391551 -159693981 - L1ME1 LINE L1 -884 5282 4929 206 284 86 25 chr5 43393513 43393594 -159691938 + MER5A DNA MER1_type 97 182 -7 370 317 35 35 chr5 43393935 43394137 -159691395 + MIR SINE MIR 15 216 -46 197 268 24 61 chr5 43394135 43394217 -159691315 + L3b LINE CR1 1155 1233 -350 * 361 267 63 84 chr5 43395862 43396053 -159689479 - MLT1J2 LTR MaLR 0 450 264 276 234 6 6 chr5 43396136 43396229 -159689303 - MLT1J1 LTR MaLR -331 119 26 1506 155 39 28 chr5 43396608 43396922 -159688610 + AluJb SINE Alu 1 312 0 2573 62 0 0 chr5 43397189 43397495 -159688037 - AluY SINE Alu -5 306 1 339 308 63 31 chr5 43398309 43398468 -159687064 + MIR SINE MIR 29 192 -70 250 388 89 28 chr5 43399221 43399579 -159685953 + L2 LINE L2 2866 3245 -27 312 83 0 0 chr5 43400455 43400503 -159685029 + (TG)n Simple_repeat Simple_repeat 2 49 0 1950 266 32 42 chr5 43400651 43401248 -159684284 + L1MA8 LINE L1 469 1059 -6430 17340 175 31 19 chr5 43401325 43403705 -159681827 + L1MA8 LINE L1 1897 4246 -3464 1491 365 64 6 chr5 43403705 43404047 -159681485 - THE1B LTR MaLR -2 362 1 17340 175 31 19 chr5 43404047 43406187 -159679345 + L1MA8 LINE L1 4246 6503 -1207 2316 107 3 0 chr5 43406187 43406485 -159679047 - AluSx SINE Alu -13 299 1 17340 175 31 19 chr5 43406485 43407707 -159677825 + L1MA8 LINE L1 6503 7708 -2 937 291 86 30 chr5 43408000 43408491 -159677041 + LTR33 LTR ERVL 3 520 -1 627 162 45 0 chr5 43408798 43408909 -159676623 + L1MB1 LINE L1 6047 6162 -6 856 118 0 154 chr5 43409002 43409223 -159676309 - MER53 DNA DNA -2 187 1 236 352 16 32 chr5 43409335 43409460 -159676072 + MIR SINE MIR 22 144 -118 1237 249 97 20 chr5 43409917 43410307 -159675225 - LTR16C LTR ERVL 0 491 72 1487 167 65 36 chr5 43410531 43410834 -159674698 - AluJb SINE Alu 0 311 1 532 290 116 20 chr5 43411154 43411399 -159674133 - MIR3 SINE MIR 0 262 16 869 267 0 31 chr5 43412004 43412229 -159673303 - MER58A DNA MER1_type -3 221 4 2159 131 74 6 chr5 43413304 43413655 -159671877 - THE1C LTR MaLR 0 375 1 276 257 42 69 chr5 43413831 43413975 -159671557 - MIR SINE MIR -24 238 99 383 243 48 95 chr5 43414840 43415057 -159670475 + MIR SINE MIR 33 245 -17 1890 166 0 0 chr5 43415067 43415369 -159670163 - AluJb SINE Alu -10 302 1 711 282 125 18 chr5 43417134 43417414 -159668118 - MLT1I LTR MaLR 0 409 100 464 223 93 7 chr5 43417680 43417819 -159667713 - MIR SINE MIR -3 259 109 262 246 0 18 chr5 43417819 43417876 -159667656 - LTR16C LTR ERVL 0 491 436 475 279 92 26 chr5 43417919 43418148 -159667384 - LTR16C LTR ERVL -150 341 98 2259 40 20 20 chr5 43418559 43418857 -159666675 + AluY SINE Alu 3 300 -11 183 289 0 0 chr5 43418941 43418979 -159666553 + L2 LINE L2 3149 3186 -86 325 284 33 93 chr5 43420998 43421181 -159664351 + MIR SINE MIR 32 203 -59 316 272 0 96 chr5 43421778 43421903 -159663629 - MLT1H LTR MaLR -10 539 427 240 306 0 0 chr5 43422166 43422228 -159663304 - MLT1I LTR MaLR -290 119 58 2080 106 3 30 chr5 43422605 43422907 -159662625 - AluSp SINE Alu -19 294 1 24 32 0 0 chr5 43423183 43423214 -159662318 + AT_rich Low_complexity Low_complexity 1 31 0 204 40 0 0 chr5 43424086 43424111 -159661421 + (ATG)n Simple_repeat Simple_repeat 2 26 0 208 309 37 25 chr5 43424117 43424198 -159661334 - MIR SINE MIR -161 101 20 3030 202 119 27 chr5 43424257 43425095 -159660437 + L1MD3 LINE L1 7081 7995 0 578 268 15 82 chr5 43426440 43426492 -159659040 - MIR SINE MIR 0 262 208 1670 146 62 0 chr5 43426492 43426752 -159658780 - AluJb SINE Alu -3 309 34 578 268 15 82 chr5 43426752 43426968 -159658564 - MIR SINE MIR -54 208 12 1079 125 9 0 chr5 43427223 43427396 -159658136 + MSTB LTR MaLR 5 197 -260 682 192 26 64 chr5 43427476 43427632 -159657900 + MSTB LTR MaLR 149 298 -128 2478 228 178 63 chr5 43427642 43428176 -159657356 - L2 LINE L2 -4 3309 2838 2152 120 3 7 chr5 43428176 43428475 -159657057 - AluSx SINE Alu -14 298 1 2478 228 178 63 chr5 43428475 43429407 -159656125 - L2 LINE L2 -475 2838 1671 2108 128 10 0 chr5 43429759 43430056 -159655476 + AluSx SINE Alu 1 300 -12 531 293 63 11 chr5 43430141 43430315 -159655217 + MIR SINE MIR 24 206 -56 2055 115 37 7 chr5 43431766 43432062 -159653470 + AluSq SINE Alu 6 310 -3 2995 247 181 28 chr5 43432064 43433374 -159652158 + HAL1 LINE L1 210 1720 -787 746 122 9 0 chr5 43433684 43433791 -159651741 - AluSg/x SINE Alu -9 303 196 189 0 0 0 chr5 43433792 43433813 -159651719 + (T)n Simple_repeat Simple_repeat 1 21 0 848 214 0 7 chr5 43433825 43433979 -159651553 + FRAM SINE Alu 1 152 -24 2507 52 0 7 chr5 43433988 43434293 -159651239 + AluY SINE Alu 1 303 -8 1832 153 14 0 chr5 43435219 43435500 -159650032 + AluSx SINE Alu 1 285 -27 214 318 47 12 chr5 43436198 43436283 -159649249 + MIR3 SINE MIR 87 174 -34 947 239 59 0 chr5 43436344 43436566 -159648966 + MIR SINE MIR 25 259 -3 378 0 0 0 chr5 43436644 43436686 -159648846 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2002 110 0 39 chr5 43436700 43436982 -159648550 - AluSx SINE Alu -37 275 5 369 307 64 72 chr5 43436982 43437225 -159648307 + L2 LINE L2 2918 3160 -112 613 76 0 13 chr5 43437344 43437423 -159648109 + MER30 DNA MER1_type 1 78 -152 288 186 0 100 chr5 43437601 43437671 -159647861 + MER30 DNA MER1_type 168 230 0 451 294 75 0 chr5 43437681 43437827 -159647705 + MIR SINE MIR 68 224 -38 2020 192 90 0 chr5 43439300 43439733 -159645799 + Charlie4a DNA MER1_type 28 499 -9 916 193 5 96 chr5 43439753 43439971 -159645561 - MER58A DNA MER1_type 0 224 27 600 203 34 51 chr5 43441133 43441310 -159644222 - MER112 DNA MER1_type -70 190 17 399 227 22 138 chr5 43441496 43441765 -159643767 - MER112 DNA MER1_type -6 254 17 314 299 108 52 chr5 43441778 43442066 -159643466 - L3 LINE CR1 -54 1523 1220 188 321 136 0 chr5 43442565 43442646 -159642886 + MIR3 SINE MIR 69 160 -48 227 225 0 0 chr5 43442781 43442821 -159642711 + MIR3 SINE MIR 150 189 -19 713 203 8 0 chr5 43443077 43443200 -159642332 - AluJb SINE Alu -7 305 182 1441 126 126 50 chr5 43443202 43443480 -159642052 - AluJo SINE Alu -8 304 6 637 195 54 87 chr5 43444717 43444902 -159640630 + MIR SINE MIR 63 241 -21 1252 187 75 13 chr5 43445057 43445362 -159640170 - MER33 DNA MER1_type 0 324 1 632 250 149 16 chr5 43445415 43445623 -159639909 - MIR SINE MIR 0 262 35 204 156 67 0 chr5 43446926 43446971 -159638561 - MER5A DNA MER1_type -18 171 124 327 146 0 0 chr5 43447533 43447588 -159637944 + (CA)n Simple_repeat Simple_repeat 2 56 0 2127 96 0 57 chr5 43448078 43448392 -159637140 - AluSg SINE Alu -14 296 1 848 214 0 7 chr5 43448401 43448555 -159636977 - FRAM SINE Alu -24 152 1 1072 315 9 39 chr5 43448738 43449173 -159636359 + ERVL LTR ERVL 1345 1766 -3998 189 0 0 0 chr5 43449330 43449351 -159636181 + (GCCTG)n Simple_repeat Simple_repeat 2 22 0 797 261 88 86 chr5 43449605 43450123 -159635409 + MLT1G1 LTR MaLR 30 588 -7 2691 116 16 5 chr5 43450165 43450536 -159634996 + THE1C LTR MaLR 1 375 0 604 255 62 31 chr5 43451363 43451555 -159633977 + MIR SINE MIR 20 217 -45 208 205 0 0 chr5 43451760 43451799 -159633733 + MER91 DNA MER1_type 1 39 -151 1868 184 125 10 chr5 43451881 43452272 -159633260 - MER63B DNA MER1_type 0 436 1 569 263 129 26 chr5 43453169 43453401 -159632131 + MIR SINE MIR 7 262 0 3100 123 72 4 chr5 43454007 43454509 -159631023 - L1MA8 LINE L1 -10 6281 5746 319 211 109 54 chr5 43454914 43455061 -159630471 + MIR SINE MIR 73 227 -35 * 596 248 0 75 chr5 43455043 43455158 -159630374 + MIR SINE MIR 14 115 -147 2447 61 3 0 chr5 43455158 43455454 -159630078 - AluY SINE Alu -14 297 1 596 248 0 75 chr5 43455454 43455499 -159630033 + MIR SINE MIR 115 162 -100 440 272 99 72 chr5 43455664 43455720 -159629812 - L1ME4a LINE L1 0 6121 6068 2046 132 0 13 chr5 43455720 43456024 -159629508 + AluSx SINE Alu 1 300 -12 440 272 99 72 chr5 43456024 43456523 -159629009 - L1ME4a LINE L1 -53 6068 5551 391 280 67 64 chr5 43457009 43457291 -159628241 - L1ME4a LINE L1 -1111 5035 4753 928 281 133 0 chr5 43457663 43457948 -159627584 + MLT1I LTR MaLR 85 407 -2 450 189 186 50 chr5 43458523 43458708 -159626824 + MIR SINE MIR 19 222 -40 2215 122 0 3 chr5 43458708 43459011 -159626521 + AluSx SINE Alu 1 302 -10 450 189 186 50 chr5 43459011 43459026 -159626506 + MIR SINE MIR 222 234 -28 22 0 0 0 chr5 43459048 43459070 -159626462 + AT_rich Low_complexity Low_complexity 1 22 0 662 236 73 16 chr5 43459297 43459488 -159626044 + MIR SINE MIR 39 240 -22 248 333 43 0 chr5 43460033 43460150 -159625382 + MIR SINE MIR 84 205 -57 313 113 57 24 chr5 43461168 43461292 -159624240 + (CTATA)n Simple_repeat Simple_repeat 3 130 0 193 67 22 44 chr5 43461392 43461437 -159624095 + (CTATA)n Simple_repeat Simple_repeat 2 45 0 1581 109 53 12 chr5 43461475 43461722 -159623810 - AluSx SINE Alu -55 257 1 456 239 62 0 chr5 43462349 43462462 -159623070 - L2 LINE L2 -2 3311 3192 224 270 79 48 chr5 43462540 43462666 -159622866 - L2 LINE L2 -907 2407 2278 320 321 36 29 chr5 43463003 43463143 -159622389 + MIR3 SINE MIR 2 142 -66 707 212 47 35 chr5 43463163 43463333 -159622199 + MER5A DNA MER1_type 18 189 0 257 228 13 0 chr5 43463484 43463563 -159621969 + (TG)n Simple_repeat Simple_repeat 1 80 0 3445 117 24 22 chr5 43463861 43464365 -159621167 - MER1A DNA MER1_type -6 523 19 1420 292 70 54 chr5 43464726 43465408 -159620124 - MER115 DNA AcHobo 0 693 1 1974 142 30 0 chr5 43466685 43466981 -159618551 + AluSx SINE Alu 1 305 -7 242 287 35 0 chr5 43467665 43467752 -159617780 + MER117 DNA MER1_type 3 92 -105 298 303 153 18 chr5 43467798 43468125 -159617407 - L2 LINE L2 -850 2464 2094 277 146 0 0 chr5 43468178 43468219 -159617313 + MIR SINE MIR 111 151 -111 556 314 50 4 chr5 43468231 43468470 -159617062 + HAL1 LINE L1 2 251 -2256 245 242 81 0 chr5 43468598 43468660 -159616872 - L1ME LINE L1 -373 5793 5727 39 84 0 0 chr5 43468823 43468918 -159616614 + AT_rich Low_complexity Low_complexity 1 95 0 2204 73 28 7 chr5 43469423 43469709 -159615823 - AluY SINE Alu -19 292 1 2332 95 3 0 chr5 43469719 43470015 -159615517 - AluSx SINE Alu -15 297 1 1094 194 7 73 chr5 43470523 43470796 -159614736 - L1MD3 LINE L1 0 7995 7741 601 290 86 67 chr5 43470840 43470946 -159614586 - L1ME LINE L1 -334 5787 5685 2055 119 176 19 chr5 43470946 43471316 -159614216 - MSTA LTR MaLR 0 428 1 601 290 86 67 chr5 43471316 43471734 -159613798 - L1ME LINE L1 -436 5685 5257 29 0 0 0 chr5 43471842 43471871 -159613661 + AT_rich Low_complexity Low_complexity 1 29 0 1521 184 11 14 chr5 43471920 43472238 -159613294 + AluJo SINE Alu 4 320 0 219 291 9 55 chr5 43472406 43472516 -159613016 + L2 LINE L2 2393 2497 -817 243 200 33 17 chr5 43473466 43473526 -159612006 + LTR33A LTR ERVL 463 523 0 3034 124 63 2 chr5 43473989 43474449 -159611083 - L1MC1 LINE L1 -1 6332 5845 3405 126 21 11 chr5 43474639 43475196 -159610336 - L1MC1 LINE L1 -489 5844 5282 * 6453 80 5 12 chr5 43475179 43475364 -159610168 - L1PA14 LINE L1 0 6161 5976 3703 118 8 4 chr5 43475364 43475873 -159609659 - MER9 LTR ERVK 0 511 1 6453 80 5 12 chr5 43475873 43476571 -159608961 - L1PA14 LINE L1 -185 5976 5285 975 165 6 39 chr5 43476723 43476905 -159608627 + MER2 DNA MER2_type 170 345 0 312 265 61 48 chr5 43476929 43477076 -159608456 + MER112 DNA MER1_type 93 241 -19 2044 163 33 3 chr5 43477089 43477426 -159608106 - MER7A DNA MER2_type 0 346 2 1928 107 19 4 chr5 43477520 43477782 -159607750 - AluSq SINE Alu -47 266 1 2257 110 0 0 chr5 43477794 43478094 -159607438 - AluSc SINE Alu -9 300 1 1706 142 48 52 chr5 43479627 43479772 -159605760 + AluJb SINE Alu 1 145 -167 1936 109 3 54 chr5 43479772 43480066 -159605466 + AluSx SINE Alu 21 299 -13 1706 142 48 52 chr5 43480066 43480230 -159605302 + AluJb SINE Alu 145 309 -3 896 311 89 12 chr5 43481527 43482100 -159603432 - L1ME3A LINE L1 -230 5940 5319 757 278 80 26 chr5 43482170 43482655 -159602877 - L1ME3A LINE L1 -875 5271 4760 2192 101 14 3 chr5 43482655 43482673 -159602859 - AluSx SINE Alu -12 300 284 324 0 0 0 chr5 43482673 43482709 -159602823 + (TG)n Simple_repeat Simple_repeat 1 36 0 2192 101 14 3 chr5 43482709 43482987 -159602545 - AluSx SINE Alu -28 284 1 1119 137 0 6 chr5 43483071 43483239 -159602293 - AluSx SINE Alu -17 295 129 5139 99 4 1 chr5 43483241 43483917 -159601615 - L1PA14 LINE L1 0 6161 5484 1884 42 0 0 chr5 43483987 43484199 -159601333 - L1PA5 LINE L1 -13 6141 5930 1010 62 86 0 chr5 43484200 43484328 -159601204 - AluSx SINE Alu -173 139 1 16830 135 19 57 chr5 43584361 43584917 -159500615 - L1PA12 LINE L1 -2753 4831 4255 2163 124 13 3 chr5 43584917 43585223 -159500309 - AluSc SINE Alu 0 309 1 16830 135 19 57 chr5 43585223 43587911 -159497621 - L1PA12 LINE L1 -3329 4255 485 21 36 0 0 chr5 43588448 43588476 -159497056 + AT_rich Low_complexity Low_complexity 1 28 0 1647 214 81 37 chr5 43589136 43589571 -159495961 + MSTB2 LTR MaLR 4 457 0 201 279 101 47 chr5 43589623 43589752 -159495780 - MIR3 SINE MIR -58 150 15 219 328 78 26 chr5 43590715 43590831 -159494701 + MER5A DNA MER1_type 64 185 -4 337 230 7 149 chr5 43593329 43593477 -159492055 - MIR3 SINE MIR -3 205 79 312 27 0 0 chr5 43593932 43593969 -159491563 + (CA)n Simple_repeat Simple_repeat 2 38 0 480 316 51 0 chr5 43594109 43594267 -159491265 - MIR SINE MIR -94 168 3 207 0 0 0 chr5 43595423 43595446 -159490086 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1968 94 20 0 chr5 43595480 43595735 -159489797 - AluSq SINE Alu -53 260 1 222 327 0 0 chr5 43596480 43596532 -159489000 - L2 LINE L2 -20 3293 3242 1989 139 171 29 chr5 43596594 43596757 -159488775 + MSTA LTR MaLR 1 140 -288 2108 110 0 26 chr5 43596757 43597067 -159488465 + AluSp SINE Alu 1 302 -11 1989 139 171 29 chr5 43597067 43597278 -159488254 + MSTA LTR MaLR 140 428 0 463 312 129 58 chr5 43597665 43597816 -159487716 - L2 LINE L2 -572 2742 2603 2316 120 133 13 chr5 43597816 43598198 -159487334 - MSTA LTR MaLR 0 428 1 463 312 129 58 chr5 43598198 43598767 -159486765 - L2 LINE L2 -711 2603 1971 224 135 0 19 chr5 43598894 43598946 -159486586 + (TAAAAA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr5 43599244 43599266 -159486266 + AT_rich Low_complexity Low_complexity 1 22 0 1802 118 0 4 chr5 43599326 43599581 -159485951 + AluSx SINE Alu 1 254 -58 1430 218 104 47 chr5 43599681 43600318 -159485214 + L1MC5 LINE L1 7254 7926 -35 2268 100 3 3 chr5 43600503 43600802 -159484730 + AluSg SINE Alu 1 299 -11 1834 155 3 24 chr5 43602255 43602552 -159482980 + AluSx SINE Alu 1 291 -21 2324 185 59 27 chr5 43602980 43603423 -159482109 - MSTB2 LTR MaLR 0 457 1 250 349 0 12 chr5 43604326 43604412 -159481120 + MIR SINE MIR 20 104 -158 217 272 71 42 chr5 43604915 43605059 -159480473 + MIR3 SINE MIR 1 152 -96 203 152 0 0 chr5 43605334 43605367 -159480165 + (TG)n Simple_repeat Simple_repeat 2 34 0 467 298 16 0 chr5 43605524 43605645 -159479887 - L2 LINE L2 -8 3305 3183 781 255 33 127 chr5 43606944 43607465 -159478067 - MARNA DNA Mariner -39 547 76 21 57 0 0 chr5 43607831 43607866 -159477666 + AT_rich Low_complexity Low_complexity 1 35 0 1645 166 0 58 chr5 43607901 43608214 -159477318 - AluJb SINE Alu -17 295 1 844 134 0 0 chr5 43608737 43608856 -159476676 - AluSg/x SINE Alu -8 302 184 1026 157 0 76 chr5 43608961 43609029 -159476503 + L1PB3 LINE L1 5971 6043 -111 2164 126 0 0 chr5 43609029 43609331 -159476201 + AluSc SINE Alu 1 302 -7 1026 157 0 76 chr5 43609331 43609460 -159476072 + L1PB3 LINE L1 6043 6153 -1 266 118 39 0 chr5 43609480 43609531 -159476001 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 2181 198 73 44 chr5 43610244 43610749 -159474783 - MLT2B1 LTR ERVL 0 520 1 206 368 63 21 chr5 43611045 43611235 -159474297 + MIR3 SINE MIR 7 204 -4 187 352 113 0 chr5 43611252 43611394 -159474138 - MIR SINE MIR -16 246 89 806 334 32 16 chr5 43611826 43612432 -159473100 - L1MC4a LINE L1 -1922 5886 5276 26 74 0 0 chr5 43612539 43612593 -159472939 + AT_rich Low_complexity Low_complexity 1 54 0 400 266 102 33 chr5 43612687 43612991 -159472541 - L1MC4a LINE L1 -1444 4702 4378 264 278 153 14 chr5 43613235 43613379 -159472153 - L1MC4a LINE L1 -2409 3737 3574 517 288 116 64 chr5 43613410 43613737 -159471795 + L2 LINE L2 2384 2727 -587 2595 174 51 14 chr5 43613740 43614233 -159471299 - LTR53 LTR ERVL -8 511 1 599 315 4 22 chr5 43614242 43614496 -159471036 + L2 LINE L2 2775 3023 -290 440 330 33 19 chr5 43614571 43614841 -159470691 - L1ME3A LINE L1 -284 5886 5613 266 256 0 26 chr5 43615430 43615508 -159470024 + CT-rich Low_complexity Low_complexity 3 78 0 501 262 35 21 chr5 43615938 43616083 -159469449 + MIR3 SINE MIR 19 165 -43 2255 101 0 10 chr5 43616089 43616387 -159469145 + AluSc SINE Alu 1 295 -14 251 364 83 8 chr5 43617371 43617503 -159468029 - MIR3 SINE MIR -64 144 3 244 242 152 20 chr5 43617582 43617681 -159467851 + LTR33A LTR ERVL 412 523 0 385 312 9 0 chr5 43617732 43617841 -159467691 - MIR3 SINE MIR -35 173 64 487 319 54 0 chr5 43617916 43618101 -159467431 + MIR SINE MIR 46 240 -22 1962 119 0 0 chr5 43618513 43618781 -159466751 - AluSg SINE Alu -9 301 34 920 289 141 5 chr5 43619168 43619566 -159465966 - LTR33 LTR ERVL -63 458 7 205 446 161 15 chr5 43621031 43621497 -159464035 + L2 LINE L2 2273 2806 -508 224 167 21 21 chr5 43622368 43622416 -159463116 + CT-rich Low_complexity Low_complexity 5 52 0 207 0 0 0 chr5 43622628 43622651 -159462881 + (TG)n Simple_repeat Simple_repeat 1 23 0 586 315 86 21 chr5 43622845 43623233 -159462299 + LTR16B LTR ERVL 5 464 0 1425 112 0 23 chr5 43623363 43623578 -159461954 + AluSq SINE Alu 1 210 -103 31 26 0 0 chr5 43624264 43624302 -159461230 + AT_rich Low_complexity Low_complexity 1 38 0 2197 79 14 0 chr5 43624302 43624579 -159460953 - AluSq SINE Alu -24 289 9 232 235 35 71 chr5 43625120 43625205 -159460327 - MIR SINE MIR -3 259 178 256 319 21 11 chr5 43625376 43625470 -159460062 - MIR SINE MIR -137 125 31 695 137 114 0 chr5 43627320 43627451 -159458081 - L1MA9 LINE L1 0 6312 6167 2632 181 19 72 chr5 43627594 43628236 -159457296 - LTR9 LTR ERV1 0 612 5 1965 107 8 0 chr5 43628508 43628770 -159456762 - AluSq SINE Alu -49 264 1 1997 54 149 4 chr5 43628835 43629096 -159456436 + AluY SINE Alu 1 299 -12 22 0 0 0 chr5 43629542 43629564 -159455968 + AT_rich Low_complexity Low_complexity 1 22 0 545 242 6 30 chr5 43629586 43629612 -159455920 - L1MA10 LINE L1 -1 6333 6308 1097 264 22 32 chr5 43629612 43629983 -159455549 - L1ME1 LINE L1 -14 6152 5786 1776 181 0 22 chr5 43630393 43630708 -159454824 - AluJo SINE Alu -4 308 1 187 203 156 0 chr5 43631871 43631935 -159453597 + L2 LINE L2 2976 3049 -223 22 56 0 0 chr5 43631992 43632028 -159453504 + AT_rich Low_complexity Low_complexity 1 36 0 507 317 97 34 chr5 43632230 43632580 -159452952 - MLT1K LTR MaLR -15 573 202 221 213 43 0 chr5 43632989 43633036 -159452496 + GA-rich Low_complexity Low_complexity 4 52 0 472 170 9 18 chr5 43633739 43633851 -159451681 + GA-rich Low_complexity Low_complexity 2 112 0 2387 99 3 3 chr5 43633986 43634299 -159451233 + AluSp SINE Alu 1 313 0 1580 157 0 12 chr5 43635793 43636035 -159449497 + AluJb SINE Alu 1 239 -73 320 188 16 0 chr5 43637224 43637288 -159448244 - L2 LINE L2 -1 3312 3248 328 321 154 37 chr5 43638288 43638469 -159447063 + L2 LINE L2 1294 1452 -1862 216 0 0 0 chr5 43638469 43638493 -159447039 + (CCCCCT)n Simple_repeat Simple_repeat 2 25 0 328 321 154 37 chr5 43638493 43638899 -159446633 + L2 LINE L2 1452 1991 -1323 2512 87 0 0 chr5 43638899 43639210 -159446322 - AluSx SINE Alu -1 311 1 328 321 154 37 chr5 43639210 43639374 -159446158 + L2 LINE L2 1991 2134 -1180 2186 120 3 3 chr5 43640442 43640743 -159444789 - AluSq SINE Alu -12 301 1 2349 212 2 5 chr5 43641372 43641797 -159443735 + MLT1F LTR MaLR 1 424 -118 587 165 9 28 chr5 43641854 43641963 -159443569 + MLT1F LTR MaLR 428 534 -8 412 301 58 34 chr5 43642006 43642352 -159443180 + LTR16A1 LTR ERVL 1 444 -6 1033 331 50 15 chr5 43642512 43642908 -159442624 + ERVL LTR ERVL 4026 4435 -1329 316 272 41 33 chr5 43643001 43643171 -159442361 + ERVL LTR ERVL 5162 5335 -204 969 298 37 45 chr5 43643255 43643701 -159441831 + LTR16A LTR ERVL 8 448 -2 2815 88 3 8 chr5 43644270 43644645 -159440887 - THE1C LTR MaLR 0 375 3 483 293 80 7 chr5 43644725 43645067 -159440465 + LTR33 LTR ERVL 12 430 -91 1535 157 68 23 chr5 43645524 43645844 -159439688 + MER61B LTR ERV1 1 423 -2 190 273 193 34 chr5 43645894 43646070 -159439462 - MIR SINE MIR -12 250 47 1203 110 0 0 chr5 43647335 43647510 -159438022 - AluSg/x SINE Alu 0 305 131 224 234 0 0 chr5 43648188 43648235 -159437297 + GA-rich Low_complexity Low_complexity 1 47 0 186 43 0 0 chr5 43648833 43648856 -159436676 + (TC)n Simple_repeat Simple_repeat 1 23 0 764 183 0 0 chr5 43649912 43650038 -159435494 + MSTB1 LTR MaLR 1 126 -306 2841 153 76 25 chr5 43650041 43650085 -159435447 - MER21A LTR ERV1 0 931 891 3593 187 57 7 chr5 43650085 43650784 -159434748 + MER50 LTR ERV1 1 734 0 2841 153 76 25 chr5 43650784 43651268 -159434264 - MER21A LTR ERV1 -40 891 376 1081 172 131 0 chr5 43651273 43651494 -159434038 - MER21A LTR ERV1 -667 264 15 2205 113 0 7 chr5 43651549 43651851 -159433681 - AluSx SINE Alu -12 300 1 4019 178 35 54 chr5 43651851 43652574 -159432958 - MER21A-int LTR ERV1 -3 4188 3485 478 0 32 0 chr5 43652574 43652636 -159432896 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 4019 178 35 54 chr5 43652636 43652839 -159432693 - MER21A-int LTR ERV1 -706 3485 3280 9971 173 14 33 chr5 43652850 43653376 -159432156 - MER21A-int LTR ERV1 -1258 2933 2399 2485 40 10 3 chr5 43653376 43653676 -159431856 + AluY SINE Alu 1 302 -9 9971 173 14 33 chr5 43653676 43654955 -159430577 - MER21A-int LTR ERV1 -1792 2399 1162 2281 80 13 20 chr5 43654963 43655263 -159430269 + AluY SINE Alu 13 310 -1 6196 152 12 17 chr5 43655350 43656384 -159429148 - MER4B-int LTR ERV1 -2646 4112 3085 2758 182 32 29 chr5 43656443 43656997 -159428535 - MER21A LTR ERV1 0 931 376 1300 166 72 0 chr5 43657002 43657237 -159428295 - MER21A LTR ERV1 -667 264 13 225 0 0 0 chr5 43657246 43657271 -159428261 + (TG)n Simple_repeat Simple_repeat 2 26 0 418 127 84 0 chr5 43657282 43657353 -159428179 + MSTB1 LTR MaLR 125 201 -231 17918 57 1 3 chr5 43657366 43659574 -159425958 + L1PA3 LINE L1 4 2205 -3941 22126 40 3 2 chr5 43659674 43662405 -159423127 + L1P LINE L1 788 3519 -2627 26509 27 11 9 chr5 43662505 43666410 -159419122 + L1PA3 LINE L1 2240 6152 -3 1349 148 38 13 chr5 43666436 43666672 -159418860 + MSTB1 LTR MaLR 188 429 -3 330 254 134 8 chr5 43666731 43666865 -159418667 - MIR SINE MIR -12 250 100 2300 86 30 3 chr5 43667252 43667554 -159417978 + AluSq SINE Alu 2 311 -2 293 372 60 30 chr5 43667784 43668053 -159417479 + L2 LINE L2 2543 2819 -495 1249 173 144 14 chr5 43668053 43668399 -159417133 - MER3 DNA MER1_type 0 2624 2234 526 209 9 17 chr5 43668402 43668517 -159417015 - MER3 DNA MER1_type -53 156 43 689 208 12 121 chr5 43668565 43668805 -159416727 - MIR SINE MIR -35 227 14 2346 193 94 106 chr5 43670599 43671211 -159414321 + L1ME1 LINE L1 35 656 -5740 3682 34 0 0 chr5 43671211 43671621 -159413911 - L1PA4 LINE L1 -3 6152 5743 2346 193 94 106 chr5 43671621 43672224 -159413308 + L1ME1 LINE L1 656 1265 -5131 874 289 44 77 chr5 43672233 43672777 -159412755 + MLT1E LTR MaLR 2 527 -66 1190 127 7 76 chr5 43672849 43673124 -159412408 + AluSx SINE Alu 55 310 -2 395 203 0 0 chr5 43673126 43673200 -159412332 + MLT1E LTR MaLR 492 565 -2 3546 239 55 20 chr5 43673201 43675054 -159410478 + L1ME1 LINE L1 1287 3170 -3045 614 200 82 0 chr5 43675057 43675192 -159410340 + L1ME1 LINE L1 4744 4889 -1326 2388 229 24 44 chr5 43675197 43675796 -159409736 + L1ME1 LINE L1 5577 6163 -72 198 0 0 0 chr5 43675796 43675818 -159409714 + (CA)n Simple_repeat Simple_repeat 2 23 0 2388 229 24 44 chr5 43675818 43675881 -159409651 + L1ME1 LINE L1 6163 6226 -9 216 0 0 0 chr5 43676803 43676827 -159408705 + (T)n Simple_repeat Simple_repeat 1 24 0 421 259 160 0 chr5 43677217 43677348 -159408184 - MIR SINE MIR -102 160 9 25 0 0 0 chr5 43677523 43677548 -159407984 + AT_rich Low_complexity Low_complexity 1 25 0 354 289 113 6 chr5 43679292 43679451 -159406081 + MIR SINE MIR 72 247 -15 563 285 67 6 chr5 43679483 43679648 -159405884 + MER45A DNA AcHobo 1 175 -3 373 198 93 0 chr5 43680036 43680122 -159405410 - MER69 DNA AcHobo 0 2526 2433 297 0 0 0 chr5 43680336 43680369 -159405163 + (TA)n Simple_repeat Simple_repeat 1 33 0 2312 101 7 3 chr5 43680369 43680677 -159404855 - AluSq SINE Alu -4 309 1 304 204 29 7 chr5 43680784 43680921 -159404611 + (TA)n Simple_repeat Simple_repeat 1 140 0 319 273 140 20 chr5 43681035 43681185 -159404347 - MIR3 SINE MIR -28 180 13 27 29 0 0 chr5 43681622 43681656 -159403876 + AT_rich Low_complexity Low_complexity 1 34 0 360 225 82 110 chr5 43681876 43681921 -159403611 + MER5B DNA MER1_type 2 47 -131 1917 156 0 0 chr5 43681921 43682216 -159403316 - AluSx SINE Alu -17 295 1 360 225 82 110 chr5 43682216 43682352 -159403180 + MER5B DNA MER1_type 47 178 0 1018 194 9 65 chr5 43682613 43682845 -159402687 - MER20 DNA MER1_type 0 219 1 211 259 71 12 chr5 43684824 43684909 -159400623 + MIR3 SINE MIR 109 198 -10 271 58 0 39 chr5 43685037 43685089 -159400443 + (GA)n Simple_repeat Simple_repeat 2 51 0 309 258 123 38 chr5 43685809 43685962 -159399570 + MIR SINE MIR 30 192 -67 1760 155 121 67 chr5 43686044 43686450 -159399082 + MSTA LTR MaLR 1 428 0 1811 123 55 22 chr5 43686521 43687050 -159398482 - MER4A LTR ERV1 0 664 1 816 217 28 46 chr5 43687060 43687277 -159398255 - MIR SINE MIR -40 222 10 3044 123 108 63 chr5 43687328 43687852 -159397680 + MER4B LTR ERV1 1 555 -55 2225 110 20 0 chr5 43687852 43688151 -159397381 - AluSx SINE Alu -7 305 1 3044 123 108 63 chr5 43688151 43688210 -159397322 + MER4B LTR ERV1 555 610 0 220 284 104 49 chr5 43688504 43688687 -159396845 - L2 LINE L2 -1 3312 3120 343 198 306 0 chr5 43689056 43689167 -159396365 + MER103 DNA DNA 19 163 -3 2145 166 80 19 chr5 43689204 43689669 -159395863 - MER50 LTR ERV1 0 734 242 347 260 110 30 chr5 43689758 43689858 -159395674 - MER50 LTR ERV1 -617 117 10 593 325 148 37 chr5 43690320 43690962 -159394570 - L2 LINE L2 -534 2780 2068 2027 169 5 63 chr5 43691175 43691572 -159393960 - MLT1A2 LTR MaLR 0 374 1 407 349 39 37 chr5 43691780 43692135 -159393397 - L2 LINE L2 -1108 2206 1851 3435 109 42 35 chr5 43692177 43692779 -159392753 - MER4B LTR ERV1 0 779 1 231 254 8 134 chr5 43692998 43693132 -159392400 + L2 LINE L2 2164 2280 -1034 261 235 0 0 chr5 43693677 43693728 -159391804 - L2 LINE L2 -9 3304 3254 1868 125 4 0 chr5 43694068 43694332 -159391200 + AluSx SINE Alu 38 302 -10 734 144 60 56 chr5 43694493 43694707 -159390825 - MER106B DNA MER1_type 0 1059 27 992 144 69 0 chr5 43694838 43695011 -159390521 - MER20 DNA MER1_type 0 219 35 952 188 43 27 chr5 43695975 43696161 -159389371 + MER5A DNA MER1_type 1 189 0 574 319 27 21 chr5 43696169 43696357 -159389175 - MER5A DNA MER1_type 0 189 1 2502 42 0 13 chr5 43696508 43696816 -159388716 + AluY SINE Alu 1 304 -7 427 321 36 15 chr5 43697579 43697716 -159387816 + MER91A DNA MER1_type 4 143 -53 2005 168 7 67 chr5 43697902 43698319 -159387213 - L1MC2 LINE L1 -10 6334 5943 2050 163 6 11 chr5 43698565 43698914 -159386618 - MLT1A1 LTR MaLR -8 357 11 1005 213 40 5 chr5 43698995 43699197 -159386335 + MER3 DNA MER1_type 1 209 0 208 0 62 0 chr5 43699301 43699333 -159386199 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2243 92 0 0 chr5 43699337 43699621 -159385911 - AluSg SINE Alu -26 284 1 22 99 0 0 chr5 43699769 43699840 -159385692 + AT_rich Low_complexity Low_complexity 1 71 0 2250 113 3 0 chr5 43699868 43700168 -159385364 - AluSx SINE Alu -11 301 1 371 316 32 16 chr5 43701490 43701677 -159383855 + L2 LINE L2 3119 3308 -5 634 235 145 30 chr5 43701699 43701899 -159383633 + MIR SINE MIR 33 255 -7 202 353 60 27 chr5 43702445 43702595 -159382937 + MIR SINE MIR 47 201 -61 297 0 0 0 chr5 43702792 43702825 -159382707 + (CA)n Simple_repeat Simple_repeat 2 34 0 1598 88 0 44 chr5 43703320 43703548 -159381984 + AluY SINE Alu 84 301 -10 315 203 34 9 chr5 43704272 43704377 -159381155 + MIR SINE MIR 41 147 -69 180 316 53 42 chr5 43704588 43704683 -159380849 + L2 LINE L2 3168 3263 -9 185 286 182 13 chr5 43704760 43704837 -159380695 + MIR SINE MIR 16 105 -157 238 298 62 133 chr5 43704932 43705475 -159380057 + L2 LINE L2 2742 3270 -2 192 214 125 0 chr5 43705526 43705582 -159379950 + MIR SINE MIR 200 262 0 263 184 0 0 chr5 43706368 43706417 -159379115 + AluSp/q SINE Alu 255 303 0 23 33 0 0 chr5 43706733 43706763 -159378769 + AT_rich Low_complexity Low_complexity 1 30 0 4112 186 23 60 chr5 43707549 43708454 -159377078 - L1MA9 LINE L1 -38 6274 5425 2259 126 47 47 chr5 43708454 43708818 -159376714 - THE1B LTR MaLR 0 364 1 4112 186 23 60 chr5 43708818 43709134 -159376398 - L1MA9 LINE L1 -887 5425 5099 293 338 55 28 chr5 43709407 43709552 -159375980 - L2 LINE L2 -12 3260 3112 31 26 0 0 chr5 43709986 43710024 -159375508 + AT_rich Low_complexity Low_complexity 1 38 0 884 134 98 12 chr5 43710330 43710494 -159375038 + FRAM SINE Alu 1 176 0 823 294 46 25 chr5 43710730 43711056 -159374476 + MLT1I LTR MaLR 59 391 -18 322 330 109 40 chr5 43711075 43711396 -159374136 - L2 LINE L2 -363 2951 2609 729 267 88 5 chr5 43711396 43711613 -159373919 - MIR SINE MIR -2 260 26 215 314 117 55 chr5 43711736 43712172 -159373360 - L2 LINE L2 -823 2491 2029 449 281 46 7 chr5 43712917 43713070 -159372462 + MER103 DNA DNA 2 160 -6 490 274 74 15 chr5 43713211 43713505 -159372027 + MLT1I LTR MaLR 70 408 -1 2018 115 7 39 chr5 43713687 43713992 -159371540 + AluSx SINE Alu 1 295 -17 2339 107 3 0 chr5 43714038 43714348 -159371184 + AluSp SINE Alu 1 311 -2 412 296 59 30 chr5 43714370 43714505 -159371027 - MER5A DNA MER1_type -49 140 2 387 193 68 0 chr5 43714816 43714904 -159370628 - MLT1K LTR MaLR -10 578 485 249 330 0 28 chr5 43715236 43715345 -159370187 - MLT1K LTR MaLR -110 478 373 431 211 0 0 chr5 43716043 43716119 -159369413 + MER20 DNA MER1_type 139 214 -5 703 314 21 8 chr5 43716130 43716366 -159369166 - L2 LINE L2 -514 2800 2562 320 303 74 8 chr5 43716389 43716511 -159369021 - MIR SINE MIR -113 149 20 1737 240 128 6 chr5 43717141 43717625 -159367907 - L1ME3A LINE L1 -14 6156 5614 192 365 61 35 chr5 43717879 43717994 -159367538 + MIR3 SINE MIR 39 156 -52 * 506 324 200 16 chr5 43717991 43718361 -159367171 - L2 LINE L2 0 3272 2835 2059 131 16 7 chr5 43718401 43718707 -159366825 - AluSx SINE Alu -3 309 1 656 270 12 85 chr5 43719049 43719297 -159366235 - MIR SINE MIR 0 262 33 280 354 9 9 chr5 43719644 43719757 -159365775 - L2 LINE L2 -666 2648 2536 319 337 17 23 chr5 43719823 43719998 -159365534 + MER117 DNA MER1_type 6 179 -18 2774 139 26 12 chr5 43720028 43720446 -159365086 + MSTA LTR MaLR 5 428 0 396 219 42 42 chr5 43720697 43720816 -159364716 - MER103 DNA DNA -45 121 3 1932 113 92 11 chr5 43720992 43721274 -159364258 - AluSq SINE Alu -8 305 1 208 286 14 43 chr5 43721529 43721599 -159363933 + L2 LINE L2 3205 3272 0 695 296 62 4 chr5 43722273 43722516 -159363016 - MIR SINE MIR -4 258 2 1831 130 10 17 chr5 43722867 43723204 -159362328 - MER1B DNA MER1_type 0 339 34 970 239 127 7 chr5 43723495 43723779 -159361753 + LTR16A LTR ERVL 129 446 -4 806 265 168 19 chr5 43724003 43724472 -159361060 + L2 LINE L2 2742 3277 -36 205 295 46 81 chr5 43724474 43724647 -159360885 - L2 LINE L2 -901 2413 2247 2064 112 11 0 chr5 43724717 43724995 -159360537 + AluSx SINE Alu 1 281 -31 477 0 0 0 chr5 43724998 43725051 -159360481 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 479 223 64 38 chr5 43725171 43725328 -159360204 - MLT1K LTR MaLR -65 523 363 766 267 6 0 chr5 43725539 43725719 -159359813 - MER63A DNA MER1_type -28 182 2 314 321 53 15 chr5 43725720 43725851 -159359681 - MLT1K LTR MaLR -430 158 23 22 0 0 0 chr5 43726437 43726459 -159359073 + AT_rich Low_complexity Low_complexity 1 22 0 284 268 227 0 chr5 43726541 43726638 -159358894 + L2 LINE L2 3186 3304 -9 2205 91 17 3 chr5 43726664 43726961 -159358571 + AluSp SINE Alu 1 301 -12 2003 119 7 4 chr5 43727488 43727765 -159357767 + AluSx SINE Alu 15 292 -20 445 70 14 14 chr5 43727769 43727840 -159357692 + (TG)n Simple_repeat Simple_repeat 2 72 0 1822 134 65 0 chr5 43728031 43728307 -159357225 + AluJo SINE Alu 1 294 -18 602 265 146 18 chr5 43728695 43728914 -159356618 + MIR SINE MIR 6 252 -10 220 302 0 0 chr5 43729026 43729079 -159356453 + MIR SINE MIR 99 151 -111 220 98 146 0 chr5 43730833 43730874 -159354658 - L2 LINE L2 -3 3310 3264 403 219 0 10 chr5 43730998 43731094 -159354438 - MIR SINE MIR -49 213 119 2145 100 0 7 chr5 43731599 43731924 -159353608 + AluSg1 SINE Alu 1 323 0 359 348 78 5 chr5 43732432 43732636 -159352896 - L3 LINE CR1 -821 756 538 453 213 41 49 chr5 43733345 43733467 -159352065 + Charlie8 DNA MER1_type 12 132 -2285 279 267 30 69 chr5 43734004 43734105 -159351427 - MIR SINE MIR -76 132 36 647 233 123 36 chr5 43734123 43734342 -159351190 + MIR SINE MIR 1 238 -24 2262 52 42 3 chr5 43734946 43735233 -159350299 + AluY SINE Alu 1 298 -13 250 329 51 29 chr5 43735822 43735959 -159349573 - L2 LINE L2 -1035 2279 2140 385 311 126 30 chr5 43736009 43736501 -159349031 + L1 LINE L1 4882 5425 -751 721 251 5 10 chr5 43737431 43737626 -159347906 - MER119 DNA MER1_type -3 580 387 1018 228 65 19 chr5 43737627 43737951 -159347581 + MER2 DNA MER2_type 2 340 -5 1202 243 74 38 chr5 43737962 43738328 -159347204 - MER119 DNA MER1_type -200 383 5 204 273 99 41 chr5 43738429 43738550 -159346982 - L2 LINE L2 0 3272 3145 994 243 23 5 chr5 43738583 43738801 -159346731 - MER58A DNA MER1_type 0 224 3 455 240 142 27 chr5 43739093 43739318 -159346214 - HAL1 LINE L1 -760 1747 1497 290 238 119 20 chr5 43739479 43739630 -159345902 - HAL1 LINE L1 -1004 1503 1338 321 305 23 29 chr5 43740966 43741140 -159344392 + Charlie8 DNA MER1_type 10 182 -2235 305 361 23 23 chr5 43741825 43741955 -159343577 - MIR3 SINE MIR -76 132 3 719 263 66 99 chr5 43742414 43742991 -159342541 - HAL1 LINE L1 -1244 1263 706 574 207 36 57 chr5 43743954 43744147 -159341385 - L1ME1 LINE L1 -68 6098 5910 318 67 0 0 chr5 43745305 43745350 -159340182 + (TG)n Simple_repeat Simple_repeat 2 46 0 237 272 56 56 chr5 43745495 43745620 -159339912 - MLT1I LTR MaLR -8 401 277 358 259 30 15 chr5 43745726 43745857 -159339675 - MLT1I LTR MaLR -276 133 1 21 57 0 0 chr5 43746841 43746876 -159338656 + AT_rich Low_complexity Low_complexity 1 35 0 243 0 0 0 chr5 43747757 43747784 -159337748 + (CA)n Simple_repeat Simple_repeat 2 28 0 315 397 35 5 chr5 43749706 43749905 -159335627 + L2 LINE L2 2558 2762 -552 31 0 0 0 chr5 43751334 43751365 -159334167 + AT_rich Low_complexity Low_complexity 1 31 0 6796 60 49 12 chr5 43751365 43752271 -159333261 - L1PA7 LINE L1 -7 6147 5234 25 0 0 0 chr5 43752643 43752668 -159332864 + AT_rich Low_complexity Low_complexity 1 25 0 412 212 0 10 chr5 43752811 43752910 -159332622 - HAL1 LINE L1 -107 2400 2303 302 286 0 0 chr5 43752915 43752985 -159332547 + C-rich Low_complexity Low_complexity 3 72 0 263 342 35 0 chr5 43753137 43753251 -159332281 - HAL1 LINE L1 -505 2002 1885 1432 204 99 3 chr5 43753599 43753913 -159331619 + MER2 DNA MER2_type 1 344 0 289 256 12 0 chr5 43754001 43754087 -159331445 + L1ME LINE L1 5470 5556 -608 2211 277 103 25 chr5 43754115 43755514 -159330018 - HAL1 LINE L1 -859 1648 1 999 133 100 120 chr5 43755782 43755909 -159329623 + MER46A DNA MER2_type 1 122 -2609 1651 154 0 74 chr5 43755909 43756233 -159329299 - AluJb SINE Alu -3 309 10 999 133 100 120 chr5 43756233 43756346 -159329186 + MER46A DNA MER2_type 122 236 0 332 278 146 35 chr5 43756884 43757028 -159328504 + MER5A DNA MER1_type 30 189 0 2431 68 0 26 chr5 43759692 43760003 -159325529 + AluY SINE Alu 1 303 -8 555 243 65 8 chr5 43760067 43760335 -159325197 - L1M4 LINE L1 -1529 4617 4320 2198 120 0 0 chr5 43760993 43761292 -159324240 - AluSx SINE Alu -11 301 3 26 30 0 0 chr5 43761320 43761353 -159324179 + AT_rich Low_complexity Low_complexity 1 33 0 244 316 79 0 chr5 43762262 43762401 -159323131 + L1ME4a LINE L1 5967 6116 -5 32 86 0 0 chr5 43762782 43762863 -159322669 + AT_rich Low_complexity Low_complexity 1 81 0 1312 217 128 41 chr5 43762923 43763130 -159322402 - L1MD2 LINE L1 -2 6357 6169 396 0 0 0 chr5 43763130 43763174 -159322358 + (TG)n Simple_repeat Simple_repeat 2 45 0 1312 217 128 41 chr5 43763174 43763501 -159322031 - L1MD2 LINE L1 -190 6169 5782 204 125 0 0 chr5 43764128 43764160 -159321372 + (T)n Simple_repeat Simple_repeat 1 32 0 302 235 62 12 chr5 43764787 43764868 -159320664 + L2 LINE L2 3188 3272 0 281 172 16 0 chr5 43765698 43765762 -159319770 + (TA)n Simple_repeat Simple_repeat 1 65 0 2335 96 3 7 chr5 43766017 43766319 -159319213 + AluSp SINE Alu 1 301 -12 325 291 87 12 chr5 43766340 43766512 -159319020 + L1ME4a LINE L1 5756 5940 -181 2147 88 39 0 chr5 43766821 43767104 -159318428 - AluSg SINE Alu -16 294 1 1957 211 147 4 chr5 43767352 43767821 -159317711 - MLT1F LTR MaLR -2 540 5 910 255 41 122 chr5 43767902 43767936 -159317596 - L2 LINE L2 -4 3309 3274 1862 113 103 6 chr5 43767936 43768265 -159317267 + MER46B DNA MER2_type 1 236 0 910 255 41 122 chr5 43768265 43768771 -159316761 - L2 LINE L2 -39 3274 2813 401 316 159 29 chr5 43770026 43770447 -159315085 - L2 LINE L2 -960 2354 1879 245 299 65 25 chr5 43770501 43770702 -159314830 + L1ME4a LINE L1 5541 5749 -372 358 216 115 0 chr5 43770868 43771016 -159314516 + L1ME4a LINE L1 5957 6121 0 1610 131 71 22 chr5 43771273 43771541 -159313991 - AluSg SINE Alu -10 300 20 2133 121 14 0 chr5 43771587 43771877 -159313655 - AluSx SINE Alu -18 294 1 718 209 134 42 chr5 43775051 43775358 -159310174 + L1ME4a LINE L1 5521 5855 -266 335 298 0 0 chr5 43776338 43776422 -159309110 - MIR SINE MIR -131 131 48 272 250 118 0 chr5 43776432 43776508 -159309024 + L2 LINE L2 3201 3285 -28 23 54 0 0 chr5 43776628 43776665 -159308867 + AT_rich Low_complexity Low_complexity 1 37 0 2058 97 8 0 chr5 43777708 43777975 -159307557 + AluSg SINE Alu 31 299 -11 21 36 0 0 chr5 43778138 43778166 -159307366 + AT_rich Low_complexity Low_complexity 1 28 0 2135 135 0 6 chr5 43778554 43778865 -159306667 - AluJb SINE Alu -3 309 1 876 155 7 14 chr5 43780834 43780982 -159304550 + MER44D DNA MER2_type 13 429 -180 1534 270 173 32 chr5 43781017 43782043 -159303489 + HAL1 LINE L1 1338 2507 0 215 167 0 0 chr5 43782279 43782315 -159303217 - L2 LINE L2 -21 3251 3216 914 224 32 36 chr5 43783287 43783506 -159302026 + MER20 DNA MER1_type 1 218 -1 2147 118 0 29 chr5 43784847 43785160 -159300372 + AluSc SINE Alu 1 304 -5 31 76 0 0 chr5 43785841 43785907 -159299625 + AT_rich Low_complexity Low_complexity 1 66 0 24 0 0 0 chr5 43786126 43786150 -159299382 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr5 43787502 43787524 -159298008 + AT_rich Low_complexity Low_complexity 1 22 0 42 0 0 0 chr5 43789946 43789988 -159295544 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr5 43792970 43793006 -159292526 + AT_rich Low_complexity Low_complexity 1 36 0 2264 100 16 3 chr5 43794677 43794986 -159290546 + AluSq SINE Alu 1 313 0 225 293 88 14 chr5 43795439 43795586 -159289946 + MIR SINE MIR 46 203 -59 2183 104 0 7 chr5 43796976 43797274 -159288258 - AluSg SINE Alu -14 296 1 192 254 0 0 chr5 43797351 43797410 -159288122 + (TA)n Simple_repeat Simple_repeat 1 59 0 367 198 94 0 chr5 43798225 43798331 -159287201 + MLT1E1 LTR MaLR 168 283 -371 403 277 136 77 chr5 43801942 43802448 -159283084 + MLT1H LTR MaLR 1 536 -13 222 91 0 0 chr5 43802999 43803032 -159282500 + (ATG)n Simple_repeat Simple_repeat 2 34 0 358 283 37 133 chr5 43805728 43806103 -159279429 - L2 LINE L2 0 3272 2934 2343 35 7 14 chr5 43806384 43806692 -159278840 - AluY SINE Alu 0 306 1 21 0 0 0 chr5 43807047 43807068 -159278464 + AT_rich Low_complexity Low_complexity 1 21 0 276 212 70 11 chr5 43807100 43807192 -159278340 + HsTC2 DNA Tc2 4 1898 0 282 277 36 66 chr5 43807193 43807359 -159278173 + L2 LINE L2 3135 3295 -18 252 329 73 22 chr5 43807364 43807501 -159278031 + MIR SINE MIR 112 255 -7 1437 156 133 15 chr5 43809270 43809540 -159275992 + AluJb SINE Alu 1 302 0 1923 146 28 0 chr5 43809589 43809876 -159275656 - AluJb SINE Alu -17 295 1 1494 189 25 28 chr5 43810454 43810771 -159274761 - L1MB2 LINE L1 -2 6169 5854 1807 194 60 28 chr5 43810891 43811323 -159274209 + MLT1C LTR MaLR 22 467 0 200 267 107 13 chr5 43811354 43811429 -159274103 - MIR SINE MIR -69 139 58 216 213 0 0 chr5 43811610 43811657 -159273875 - L2 LINE L2 -5 3308 3262 333 248 72 42 chr5 43812209 43812403 -159273129 + MIR SINE MIR 3 211 -51 530 222 129 6 chr5 43813005 43813176 -159272356 + L1ME3 LINE L1 5970 6161 -1 221 81 0 27 chr5 43813565 43813602 -159271930 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 207 151 0 38 chr5 43813952 43814005 -159271527 + (TAA)n Simple_repeat Simple_repeat 1 51 0 190 220 0 20 chr5 43814113 43814163 -159271369 - MIR SINE MIR -48 214 166 895 187 6 11 chr5 43815364 43815546 -159269986 - MER5A DNA MER1_type -8 181 1 184 326 0 0 chr5 43815900 43815949 -159269583 - MIR SINE MIR -167 95 47 691 249 19 89 chr5 43816130 43816243 -159269289 - MER58A DNA MER1_type -2222 198 79 2120 108 17 3 chr5 43816243 43816538 -159268994 + AluSx SINE Alu 1 299 -13 691 249 19 89 chr5 43816538 43816563 -159268969 - MER58A DNA MER1_type -2341 79 54 2319 102 0 3 chr5 43816563 43816866 -159268666 - AluSx SINE Alu -10 302 1 691 249 19 89 chr5 43816866 43816939 -159268593 - MER58A DNA MER1_type -2366 54 1 721 251 141 73 chr5 43818349 43818816 -159266716 + MLT1L LTR MaLR 113 611 -4 324 158 0 0 chr5 43818872 43818929 -159266603 + (CA)n Simple_repeat Simple_repeat 1 57 0 2346 106 0 3 chr5 43820799 43821102 -159264430 - AluSq SINE Alu -11 302 1 248 291 55 55 chr5 43821173 43821300 -159264232 - MIR SINE MIR -63 145 19 236 268 0 0 chr5 43821810 43821866 -159263666 + A-rich Low_complexity Low_complexity 5 60 0 2241 97 0 0 chr5 43823624 43823912 -159261620 - AluSx SINE Alu -24 288 1 1942 118 39 15 chr5 43823976 43824308 -159261224 - L1MA5A LINE L1 -7 6290 5951 2280 110 0 3 chr5 43824504 43824804 -159260728 + AluSx SINE Alu 1 299 -13 286 367 24 9 chr5 43824836 43825046 -159260486 - L3 LINE CR1 -7 1570 1358 1323 161 20 91 chr5 43825227 43825295 -159260237 - MER41D LTR ERV1 -280 277 206 2297 105 0 0 chr5 43825295 43825590 -159259942 - AluSx SINE Alu -17 295 1 1323 161 20 91 chr5 43825590 43825819 -159259713 - MER41D LTR ERV1 -351 206 1 225 229 21 0 chr5 43825819 43825864 -159259668 - MLT1E1 LTR MaLR -608 46 1 286 214 28 45 chr5 43826113 43826291 -159259241 + (TATAA)n Simple_repeat Simple_repeat 3 177 0 25 0 0 0 chr5 43826302 43826327 -159259205 + AT_rich Low_complexity Low_complexity 1 25 0 321 209 81 23 chr5 43826835 43826921 -159258611 - MER103 DNA DNA -73 93 3 351 96 0 0 chr5 43826936 43826988 -159258544 + (TG)n Simple_repeat Simple_repeat 2 53 0 475 232 0 85 chr5 43829437 43829601 -159255931 - MIR SINE MIR 0 262 113 2426 81 7 0 chr5 43830441 43830739 -159254793 - AluSx SINE Alu -12 300 1 604 239 17 28 chr5 43830894 43831070 -159254462 + MER5B DNA MER1_type 5 178 0 2489 88 0 0 chr5 43832465 43832772 -159252760 + AluSg SINE Alu 1 307 -3 258 330 26 0 chr5 43833608 43833723 -159251809 + MIR SINE MIR 68 185 -77 536 198 0 45 chr5 43833802 43833913 -159251619 + MLT1I LTR MaLR 104 209 -200 376 257 37 44 chr5 43834085 43834221 -159251311 - L2 LINE L2 -2 3270 3136 197 180 20 0 chr5 43836054 43836104 -159249428 + CT-rich Low_complexity Low_complexity 1 51 0 640 245 25 80 chr5 43836679 43836916 -159248616 - MIR SINE MIR -16 246 23 502 191 223 37 chr5 43837026 43837214 -159248318 - MIR SINE MIR -38 224 2 2734 154 14 86 chr5 43837416 43837976 -159247556 + MLT2B1 LTR ERVL 1 520 0 872 124 71 41 chr5 43838489 43838658 -159246874 - Tigger3b DNA MER2_type -107 1124 951 1098 134 11 23 chr5 43838668 43838873 -159246659 + L1MA4A LINE L1 1 544 -6665 3273 247 19 1 chr5 43839004 43839679 -159245853 + L1MA4A LINE L1 1063 1749 -5460 * 6045 169 36 40 chr5 43839673 43841937 -159243595 + L1MA4A LINE L1 5155 7354 -11 5857 114 47 9 chr5 43841937 43842869 -159242663 - Tigger3b DNA MER2_type -263 968 1 600 184 217 0 chr5 43842875 43843027 -159242505 - MIR SINE MIR -66 196 12 35 24 0 0 chr5 43843028 43843070 -159242462 + AT_rich Low_complexity Low_complexity 1 42 0 180 0 0 0 chr5 43843134 43843154 -159242378 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 819 191 29 71 chr5 43843156 43843366 -159242166 - AluJo SINE Alu -20 292 92 2246 121 0 0 chr5 43843398 43843704 -159241828 - AluY SINE Alu -5 306 1 22 0 0 0 chr5 43843825 43843847 -159241685 + AT_rich Low_complexity Low_complexity 1 22 0 921 251 34 8 chr5 43845099 43845334 -159240198 + MER69 DNA AcHobo 4 244 -2282 1665 144 107 26 chr5 43845341 43845687 -159239845 + THE1C LTR MaLR 2 375 0 404 125 14 28 chr5 43845689 43845761 -159239771 + MER69 DNA AcHobo 2454 2524 -2 217 156 44 0 chr5 43845772 43845817 -159239715 + MIR SINE MIR 151 197 -65 1037 146 50 85 chr5 43845970 43846230 -159239302 + ORSL DNA AcHobo 1 251 -24 27 0 0 0 chr5 43847460 43847487 -159238045 + GC_rich Low_complexity Low_complexity 1 27 0 237 119 15 30 chr5 43847490 43847557 -159237975 + (CGGGGG)n Simple_repeat Simple_repeat 5 70 0 21 0 0 0 chr5 43847587 43847608 -159237924 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr5 43847669 43847692 -159237840 + GC_rich Low_complexity Low_complexity 1 23 0 21 104 0 0 chr5 43847930 43848007 -159237525 + GC_rich Low_complexity Low_complexity 1 77 0 412 170 71 18 chr5 43849695 43849807 -159235725 - L1MC4a LINE L1 -1974 5834 5717 404 37 19 0 chr5 43850564 43850618 -159234914 + (TA)n Simple_repeat Simple_repeat 2 56 0 848 276 75 44 chr5 43850721 43851173 -159234359 - L2 LINE L2 -12 3301 2836 247 350 57 0 chr5 43851252 43851375 -159234157 + L2 LINE L2 3184 3313 0 241 230 115 23 chr5 43853329 43853416 -159232116 - MIR3 SINE MIR -23 185 91 421 254 66 8 chr5 43853481 43853603 -159231929 + L2 LINE L2 3183 3311 -2 460 307 6 17 chr5 43854029 43854208 -159231324 + L1ME4a LINE L1 5501 5677 -444 2235 98 3 0 chr5 43854434 43854730 -159230802 - AluY SINE Alu -14 297 1 489 277 82 24 chr5 43854737 43854952 -159230580 + L1ME4a LINE L1 5710 5952 -169 324 0 0 0 chr5 43854952 43854988 -159230544 + (TG)n Simple_repeat Simple_repeat 2 37 0 489 277 82 24 chr5 43854988 43855100 -159230432 + L1ME4a LINE L1 5952 6056 -65 314 167 188 52 chr5 43855140 43855236 -159230296 + MIR SINE MIR 46 154 -108 1946 135 51 15 chr5 43856209 43856543 -159228989 + MER7A DNA MER2_type 2 345 -1 267 242 0 0 chr5 43857429 43857491 -159228041 - Charlie8 DNA MER1_type -991 1426 1365 576 270 105 84 chr5 43857495 43857877 -159227655 - Charlie8 DNA MER1_type -2017 400 11 303 270 72 13 chr5 43857921 43858073 -159227459 - L1ME4a LINE L1 -188 5933 5773 2534 74 0 0 chr5 43858348 43858659 -159226873 - AluY SINE Alu 0 311 1 362 286 40 31 chr5 43858699 43858860 -159226672 - L1ME4a LINE L1 -11 6110 5945 240 35 0 0 chr5 43858860 43858889 -159226643 + (CA)n Simple_repeat Simple_repeat 2 30 0 362 286 40 31 chr5 43858889 43858954 -159226578 - L1ME4a LINE L1 -176 5945 5882 367 61 0 0 chr5 43858956 43859005 -159226527 - Alu SINE Alu -6 294 246 182 36 0 36 chr5 43859380 43859408 -159226124 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2090 118 0 20 chr5 43859410 43859707 -159225825 - AluSq SINE Alu -20 293 3 318 232 99 49 chr5 43859941 43860083 -159225449 + L1ME4a LINE L1 5956 6104 -17 23 33 0 0 chr5 43860083 43860113 -159225419 + AT_rich Low_complexity Low_complexity 1 30 0 2092 132 7 0 chr5 43860776 43861071 -159224461 + AluSx SINE Alu 3 299 -13 1980 124 14 0 chr5 43861909 43862184 -159223348 + AluSx SINE Alu 1 279 -33 1783 107 0 50 chr5 43862184 43862464 -159223068 + LTR17 LTR ERV1 1 266 -514 1784 136 55 27 chr5 43964438 43964768 -159120764 - MER44D DNA MER2_type 0 609 1 23 0 0 0 chr5 43965425 43965448 -159120084 + AT_rich Low_complexity Low_complexity 1 23 0 187 235 0 39 chr5 43967133 43967184 -159118348 - L3 LINE CR1 -5 1572 1524 210 200 67 0 chr5 43967784 43967829 -159117703 + L2 LINE L2 3224 3271 -1 201 176 0 0 chr5 43967927 43967961 -159117571 + T-rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr5 43969787 43969808 -159115724 + AT_rich Low_complexity Low_complexity 1 21 0 2113 112 0 3 chr5 43969833 43970128 -159115404 - AluSx SINE Alu -18 294 1 330 275 63 41 chr5 43972570 43972718 -159112814 + MIR3 SINE MIR 37 187 -21 437 304 69 20 chr5 43975787 43975896 -159109636 - MIR SINE MIR -36 226 124 2047 90 0 22 chr5 43975896 43976174 -159109358 - AluSg SINE Alu -4 306 35 437 304 69 20 chr5 43976174 43976268 -159109264 - MIR SINE MIR -138 124 13 207 281 18 18 chr5 43976360 43976417 -159109115 + L2 LINE L2 3124 3180 -92 1323 232 169 23 chr5 43976864 43977480 -159108052 + LTR50 LTR ERVL 1 706 -89 406 156 130 0 chr5 43977488 43977565 -159107967 + 5S rRNA rRNA 2 88 -33 2244 77 20 17 chr5 43980194 43980492 -159105040 - AluSq SINE Alu -14 299 1 349 329 186 0 chr5 43981432 43981642 -159103890 + MIR SINE MIR 6 254 -8 1985 104 36 93 chr5 43981643 43981692 -159103840 - THE1B LTR MaLR 0 364 314 342 0 0 0 chr5 43981692 43981730 -159103802 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 831 176 0 0 chr5 43981730 43981878 -159103654 - FRAM SINE Alu -18 148 1 1985 104 36 93 chr5 43981878 43982213 -159103319 - THE1B LTR MaLR -48 316 1 2334 112 0 0 chr5 43982375 43982678 -159102854 - AluSq SINE Alu -10 303 1 410 319 0 33 chr5 43982969 43983151 -159102381 + MIR SINE MIR 28 203 -59 190 317 0 17 chr5 43983293 43983353 -159102179 + MIR SINE MIR 28 86 -176 2184 114 7 0 chr5 43983520 43983819 -159101713 - AluSq SINE Alu -12 301 1 448 275 25 17 chr5 43984068 43984188 -159101344 + MER5B DNA MER1_type 37 157 -21 255 321 23 23 chr5 43984263 43984394 -159101138 - MIR3 SINE MIR -24 184 54 2168 33 7 0 chr5 43984992 43985265 -159100267 - L1PA4 LINE L1 -263 5892 5618 2002 45 0 0 chr5 43985265 43985509 -159100023 + L1PA4 LINE L1 5911 6155 0 216 210 16 0 chr5 43985515 43985577 -159099955 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 2153 113 3 22 chr5 43985662 43985980 -159099552 - AluSx SINE Alu 0 312 1 1989 105 59 0 chr5 43988316 43988602 -159096930 - AluSg SINE Alu -7 303 1 414 288 102 19 chr5 43993504 43993709 -159091823 - L2 LINE L2 -1 3312 3091 231 169 65 65 chr5 43993838 43993915 -159091617 - MIR SINE MIR -111 151 75 408 301 68 30 chr5 43995961 43996094 -159089438 - L2 LINE L2 -20 3252 3115 1792 89 24 0 chr5 43998259 43998507 -159087025 + L1PA7 LINE L1 5901 6154 0 224 298 169 16 chr5 44000102 44000226 -159085306 - MIR SINE MIR -118 144 2 192 371 133 9 chr5 44000344 44000449 -159085083 - MIR SINE MIR -131 131 14 230 220 60 0 chr5 44000584 44000634 -159084898 + MIR SINE MIR 54 106 -156 395 217 322 0 chr5 44001228 44001343 -159084189 - MER5A DNA MER1_type -37 152 1 570 295 74 11 chr5 44002552 44002742 -159082790 - MIR SINE MIR -50 212 11 1764 142 0 47 chr5 44002971 44003295 -159082237 + AluSx SINE Alu 1 310 0 306 0 0 0 chr5 44005668 44005702 -159079830 + (CA)n Simple_repeat Simple_repeat 2 35 0 272 304 67 28 chr5 44009606 44009653 -159075879 + L1MC4a LINE L1 5636 5680 -2128 2069 89 48 20 chr5 44009653 44009945 -159075587 - AluSg1 SINE Alu -9 300 1 272 304 67 28 chr5 44009945 44010150 -159075382 + L1MC4a LINE L1 5680 5898 -1910 404 250 29 103 chr5 44010549 44010676 -159074856 - MER5A DNA MER1_type 0 189 81 2455 55 7 3 chr5 44010676 44010986 -159074546 - AluY SINE Alu 0 311 1 404 250 29 103 chr5 44010986 44011062 -159074470 - MER5A DNA MER1_type -108 81 1 1464 101 0 41 chr5 44011079 44011298 -159074234 + AluSc SINE Alu 97 306 -3 194 250 0 0 chr5 44011891 44011931 -159073601 - MIR SINE MIR -129 79 40 515 281 6 121 chr5 44012005 44012336 -159073196 + L3 LINE CR1 1036 1328 -249 396 186 133 0 chr5 44012343 44012456 -159073076 + MLT1C LTR MaLR 6 133 -334 412 332 133 15 chr5 44012555 44012751 -159072781 + MIR SINE MIR 23 241 -21 354 301 113 5 chr5 44012817 44013020 -159072512 + L1ME LINE L1 5594 5818 -344 724 240 143 10 chr5 44013343 44013539 -159071993 - MIR SINE MIR -38 224 3 1470 102 0 0 chr5 44013717 44013903 -159071629 - AluSg1 SINE Alu -123 186 1 214 164 36 0 chr5 44014204 44014259 -159071273 + (TG)n Simple_repeat Simple_repeat 2 58 0 223 240 0 20 chr5 44014916 44014966 -159070566 + CT-rich Low_complexity Low_complexity 1 49 0 237 65 0 0 chr5 44014973 44015004 -159070528 + (CA)n Simple_repeat Simple_repeat 1 31 0 456 268 51 19 chr5 44015074 44015231 -159070301 + MER63A DNA MER1_type 49 210 0 515 343 91 8 chr5 44015431 44015673 -159069859 + MIR SINE MIR 1 262 0 1393 274 44 27 chr5 44015879 44016385 -159069147 + L2 LINE L2 2555 3064 -249 1541 230 78 16 chr5 44016385 44016819 -159068713 + MLT1C LTR MaLR 7 467 0 195 215 139 25 chr5 44016826 44016905 -159068627 + L2 LINE L2 3061 3148 -165 384 239 151 71 chr5 44017392 44017632 -159067900 + L1MC5 LINE L1 7311 7530 -431 2148 119 3 0 chr5 44017632 44017925 -159067607 + AluSx SINE Alu 2 295 -17 384 239 151 71 chr5 44017925 44018262 -159067270 + L1MC5 LINE L1 7530 7934 -27 375 78 0 0 chr5 44018288 44018339 -159067193 + (TTCA)n Simple_repeat Simple_repeat 2 52 0 693 174 0 0 chr5 44019247 44019356 -159066176 + AluJb SINE Alu 179 287 -25 318 239 22 43 chr5 44019357 44019449 -159066083 - L1MC4 LINE L1 -1339 6703 6614 2190 124 28 36 chr5 44019453 44019817 -159065715 + THE1B LTR MaLR 4 364 0 198 368 26 26 chr5 44019820 44019937 -159065595 - MIR SINE MIR -62 200 84 304 127 48 0 chr5 44020884 44020947 -159064585 + GA-rich Low_complexity Low_complexity 4 69 0 213 121 0 0 chr5 44022364 44022397 -159063135 + (CATATA)n Simple_repeat Simple_repeat 6 38 0 22 80 0 0 chr5 44022404 44022454 -159063078 + AT_rich Low_complexity Low_complexity 1 50 0 1464 155 18 129 chr5 44022467 44022853 -159062679 + MER7A DNA MER2_type 1 341 -5 1765 132 7 43 chr5 44023098 44023401 -159062131 - AluSx SINE Alu -20 292 1 180 0 0 0 chr5 44024040 44024060 -159061472 + (TA)n Simple_repeat Simple_repeat 2 21 0 1868 155 0 20 chr5 44024128 44024425 -159061107 + AluJb SINE Alu 1 291 -21 321 135 0 0 chr5 44024426 44024478 -159061054 + (TA)n Simple_repeat Simple_repeat 1 52 0 232 233 47 0 chr5 44024483 44024569 -159060963 - L1MC4 LINE L1 -1339 6703 6614 241 298 0 0 chr5 44024570 44024627 -159060905 + (TA)n Simple_repeat Simple_repeat 1 57 0 313 318 0 0 chr5 44024628 44024716 -159060816 + L1MC4 LINE L1 6615 6702 -1340 322 297 41 41 chr5 44025412 44025557 -159059975 + HAL1 LINE L1 2307 2451 -56 341 316 39 124 chr5 44025857 44026212 -159059320 + L2 LINE L2 2948 3272 0 451 232 83 18 chr5 44026339 44026507 -159059025 + MER104 DNA MER2_type 2 180 0 271 0 0 0 chr5 44027496 44027526 -159058006 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 1239 106 252 0 chr5 44027526 44027752 -159057780 - AluSx SINE Alu -1 312 1 1706 215 65 70 chr5 44028077 44028634 -159056898 - MLT2B3 LTR ERVL 0 554 1 2054 98 0 0 chr5 44028757 44029022 -159056510 - AluSx SINE Alu -45 267 3 189 189 47 9 chr5 44029890 44029996 -159055536 + (TA)n Simple_repeat Simple_repeat 2 111 0 401 344 172 0 chr5 44030008 44030235 -159055297 + L3 LINE CR1 1304 1569 -8 1146 189 65 119 chr5 44030539 44030951 -159054581 + MLT1C LTR MaLR 1 467 0 195 42 0 0 chr5 44031028 44031052 -159054480 + (CA)n Simple_repeat Simple_repeat 1 24 0 494 297 21 81 chr5 44031153 44031486 -159054046 - L1MC4a LINE L1 -1962 5846 5534 1502 96 0 19 chr5 44031832 44032040 -159053492 - AluY SINE Alu -10 301 98 358 219 26 3 chr5 44033721 44033810 -159051722 + L1MC/D LINE L1 5680 5766 -400 192 406 83 0 chr5 44034286 44034419 -159051113 - MIR3 SINE MIR -2 206 63 2201 66 10 7 chr5 44034901 44035221 -159050311 - AluY SINE Alu 0 321 1 1175 302 63 2 chr5 44037767 44038178 -159047354 + L2 LINE L2 2169 2604 -710 2006 122 7 0 chr5 44038247 44038564 -159046968 + AluSc SINE Alu 1 319 0 310 395 59 9 chr5 44038601 44038861 -159046671 + L2 LINE L2 2787 3054 -259 1161 284 91 30 chr5 44038866 44039338 -159046194 - LTR33A LTR ERVL 0 523 23 280 258 45 45 chr5 44039467 44039556 -159045976 + L2 LINE L2 3221 3309 -4 33 43 0 0 chr5 44039975 44040022 -159045510 + AT_rich Low_complexity Low_complexity 1 47 0 309 291 115 64 chr5 44040225 44040459 -159045073 - L3b LINE CR1 -27 1556 1311 603 288 107 17 chr5 44041000 44041233 -159044299 - MIR SINE MIR -1 261 8 318 106 0 0 chr5 44041939 44041986 -159043546 + (TA)n Simple_repeat Simple_repeat 2 48 0 189 121 0 0 chr5 44042013 44042046 -159043486 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 184 338 97 28 chr5 44042189 44042334 -159043198 + L2 LINE L2 2907 3061 -252 381 235 181 72 chr5 44043210 44043431 -159042101 - MIR SINE MIR -10 252 8 448 258 182 0 chr5 44043431 44043563 -159041969 + MER5A DNA MER1_type 33 188 -1 2323 88 0 3 chr5 44043843 44044139 -159041393 + AluSc SINE Alu 1 295 -14 1926 138 13 7 chr5 44044973 44045278 -159040254 + AluJb SINE Alu 1 307 -5 367 313 0 0 chr5 44045388 44045487 -159040045 - L2 LINE L2 -8 3305 3207 298 245 90 75 chr5 44045524 44045712 -159039820 + L2 LINE L2 3123 3313 0 27 29 0 0 chr5 44045847 44045881 -159039651 + AT_rich Low_complexity Low_complexity 1 34 0 385 219 8 62 chr5 44046209 44046337 -159039195 + MER103 DNA DNA 2 122 -44 182 279 87 48 chr5 44046558 44046662 -159038870 - L2 LINE L2 -3 3269 3162 282 243 68 0 chr5 44046780 44046854 -159038678 - MIR SINE MIR -110 98 20 219 288 51 68 chr5 44047214 44047332 -159038200 - MIR3 SINE MIR -11 197 82 356 273 27 0 chr5 44047540 44047650 -159037882 - MIR SINE MIR -142 120 8 408 321 11 60 chr5 44047774 44048039 -159037493 - MARNA DNA Mariner -8 578 327 5076 139 25 5 chr5 44048639 44049472 -159036060 + L1PA16 LINE L1 5317 6166 0 23 33 0 0 chr5 44050014 44050044 -159035488 + AT_rich Low_complexity Low_complexity 1 30 0 195 256 215 6 chr5 44051104 44051206 -159034326 - MER5B DNA MER1_type -68 121 1 564 241 84 12 chr5 44051223 44051389 -159034143 - MER5B DNA MER1_type 0 178 1 1026 226 110 28 chr5 44052658 44052977 -159032555 - MER2 DNA MER2_type 0 345 1 232 200 0 0 chr5 44053164 44053209 -159032323 - L2 LINE L2 0 3313 3269 396 338 89 24 chr5 44053941 44054154 -159031378 + MIR SINE MIR 17 243 -19 1215 258 130 17 chr5 44054744 44055564 -159029968 - L2 LINE L2 0 3313 2411 249 316 32 42 chr5 44055829 44055924 -159029608 + MER5B DNA MER1_type 64 157 -21 399 320 28 6 chr5 44056175 44056353 -159029179 + MER117 DNA MER1_type 14 195 -2 214 178 0 22 chr5 44057732 44057777 -159027755 + (CATA)n Simple_repeat Simple_repeat 3 46 0 441 0 0 0 chr5 44057777 44057826 -159027706 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 369 58 0 0 chr5 44058644 44058696 -159026836 + (TA)n Simple_repeat Simple_repeat 2 53 0 956 260 71 57 chr5 44059769 44060441 -159025091 - L1ME1 LINE L1 -217 5949 5240 204 97 0 0 chr5 44060441 44060472 -159025060 + (TG)n Simple_repeat Simple_repeat 2 32 0 25 90 0 0 chr5 44060474 44060541 -159024991 + AT_rich Low_complexity Low_complexity 1 67 0 2542 26 7 13 chr5 44061295 44061602 -159023930 - AluY SINE Alu -6 305 1 413 123 0 31 chr5 44062518 44062583 -159022949 + AluS SINE Alu 225 287 -23 36 0 0 0 chr5 44062583 44062619 -159022913 + AT_rich Low_complexity Low_complexity 1 36 0 484 275 66 109 chr5 44062991 44063202 -159022330 - MIR SINE MIR -39 223 22 211 211 28 55 chr5 44063249 44063358 -159022174 + A-rich Low_complexity Low_complexity 3 108 0 720 138 0 166 chr5 44065931 44066148 -159019384 + MER96B DNA MER1_type? 1 181 -236 22 0 0 0 chr5 44067011 44067033 -159018499 + AT_rich Low_complexity Low_complexity 1 22 0 188 278 74 0 chr5 44067718 44067772 -159017760 + L2 LINE L2 3214 3271 -1 180 0 0 0 chr5 44067840 44067860 -159017672 + (T)n Simple_repeat Simple_repeat 1 20 0 459 301 63 0 chr5 44068103 44068246 -159017286 - MIR SINE MIR -1 261 110 400 230 0 0 chr5 44068435 44068509 -159017023 + L1ME LINE L1 11 84 -6775 28 0 0 0 chr5 44068543 44068571 -159016961 + AT_rich Low_complexity Low_complexity 1 28 0 261 132 21 79 chr5 44068577 44068767 -159016765 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 253 178 55 41 chr5 44068779 44068925 -159016607 + (TATAA)n Simple_repeat Simple_repeat 5 152 0 345 71 15 116 chr5 44068937 44069135 -159016397 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 41 21 0 0 chr5 44069135 44069183 -159016349 + AT_rich Low_complexity Low_complexity 1 48 0 6770 231 56 25 chr5 44069283 44071516 -159014016 + L1ME LINE L1 3716 6016 -941 390 325 36 0 chr5 44071659 44071853 -159013679 + L1ME LINE L1 6373 6573 -359 22 35 0 0 chr5 44072492 44072521 -159013011 + AT_rich Low_complexity Low_complexity 1 29 0 941 217 5 0 chr5 44073395 44073579 -159011953 - MER5A DNA MER1_type -3 186 2 2015 122 3 3 chr5 44074846 44075172 -159010360 + AluSq SINE Alu 1 326 0 519 230 96 86 chr5 44075203 44075304 -159010228 + MIR SINE MIR 52 151 -111 2322 102 3 0 chr5 44075304 44075609 -159009923 - AluSx SINE Alu -6 306 1 519 230 96 86 chr5 44075609 44075716 -159009816 + MIR SINE MIR 151 262 0 472 308 25 0 chr5 44075739 44075859 -159009673 + L2 LINE L2 3150 3272 0 925 198 49 21 chr5 44076001 44076244 -159009288 + LTR23 LTR ERV1 161 410 -27 406 300 15 8 chr5 44076699 44076829 -159008703 + MIR SINE MIR 31 161 -101 1749 184 3 10 chr5 44077964 44078274 -159007258 + AluJo SINE Alu 1 308 -4 1242 64 12 0 chr5 44078330 44078501 -159007031 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1720 171 4 11 chr5 44078501 44078782 -159006750 - AluJb SINE Alu -1 453 5 288 340 100 0 chr5 44078826 44078926 -159006606 + L2 LINE L2 3163 3272 0 1085 288 32 37 chr5 44078977 44079352 -159006180 + LTR16B LTR ERVL 2 374 -90 23 0 0 0 chr5 44080602 44080625 -159004907 + AT_rich Low_complexity Low_complexity 1 23 0 342 0 0 0 chr5 44080755 44080793 -159004739 + (TG)n Simple_repeat Simple_repeat 2 39 0 233 286 29 43 chr5 44081371 44081441 -159004091 + MER5A DNA MER1_type 51 119 -70 212 321 25 12 chr5 44081925 44082006 -159003526 + MIR3 SINE MIR 121 202 -6 2099 197 17 38 chr5 44082870 44083347 -159002185 - MLT1C LTR MaLR 0 467 1 1845 126 51 27 chr5 44083360 44083653 -159001879 - AluJb SINE Alu -12 300 1 188 349 36 36 chr5 44084337 44084420 -159001112 - L2 LINE L2 -2 3270 3188 188 307 34 91 chr5 44085978 44086066 -158999466 - L2 LINE L2 -89 3183 3101 237 338 150 8 chr5 44086068 44086201 -158999331 + MIR3 SINE MIR 9 160 -48 412 175 0 0 chr5 44086235 44086315 -158999217 - MER113 DNA MER1_type? -50 471 392 234 244 32 16 chr5 44086467 44086590 -158998942 - MER113 DNA MER1_type? -393 128 4 305 253 48 0 chr5 44088789 44088872 -158996660 + MIR SINE MIR 106 192 -70 2652 113 0 0 chr5 44088985 44089349 -158996183 - THE1B LTR MaLR 0 364 1 1561 71 9 0 chr5 44089737 44089947 -158995585 + L1PA7 LINE L1 5943 6154 0 270 231 0 0 chr5 44090309 44090361 -158995171 + L2 LINE L2 3221 3272 0 358 270 11 0 chr5 44091377 44091466 -158994066 - MER81 DNA DNA -24 90 1 534 236 176 7 chr5 44091483 44091631 -158993901 - MER5A DNA MER1_type -13 176 4 * 707 273 123 0 chr5 44091631 44091851 -158993681 + MIR SINE MIR 15 262 0 448 271 98 35 chr5 44092261 44092464 -158993068 + MIR SINE MIR 47 262 0 234 0 0 0 chr5 44093614 44093640 -158991892 + (A)n Simple_repeat Simple_repeat 1 26 0 614 254 68 6 chr5 44093819 44093996 -158991536 - MIR SINE MIR -65 197 10 286 358 73 28 chr5 44094420 44094599 -158990933 + MIR3 SINE MIR 19 205 -3 515 293 69 16 chr5 44145016 44145204 -158940328 - MIR SINE MIR -57 205 8 452 246 37 0 chr5 44145366 44145500 -158940032 + MIR3 SINE MIR 60 198 -10 318 26 0 0 chr5 44145707 44145746 -158939786 + (T)n Simple_repeat Simple_repeat 1 39 0 417 327 109 24 chr5 44146312 44146642 -158938890 + L2 LINE L2 2863 3220 -93 1976 116 34 27 chr5 44146993 44147285 -158938247 - AluSg SINE Alu -16 294 1 751 325 39 0 chr5 44149526 44149757 -158935775 - MIR SINE MIR -4 258 19 240 180 16 16 chr5 44150792 44150853 -158934679 + (TA)n Simple_repeat Simple_repeat 2 62 0 2361 79 0 0 chr5 44151867 44152157 -158933375 - AluSg SINE Alu -20 290 1 317 315 22 0 chr5 44153412 44153504 -158932028 + MIR SINE MIR 36 129 -79 261 0 0 0 chr5 44154472 44154501 -158931031 + (TG)n Simple_repeat Simple_repeat 1 29 0 1022 203 75 98 chr5 44154606 44154941 -158930591 + MLT2D LTR ERVL 83 409 -5 1255 275 48 18 chr5 44155033 44155470 -158930062 - LTR16A LTR ERVL 0 450 1 1257 272 81 25 chr5 44155479 44155949 -158929583 + MLT1J LTR MaLR 8 503 -8 1553 184 21 23 chr5 44155954 44156373 -158929159 + Tigger5 DNA MER2_type 2 2323 0 1954 226 149 13 chr5 44157079 44157601 -158927931 + MLT1E LTR MaLR 1 593 0 670 299 42 0 chr5 44157988 44158205 -158927327 + MIR SINE MIR 25 250 -12 960 209 6 0 chr5 44158358 44158535 -158926997 - MER5B DNA MER1_type 0 178 1 480 276 99 0 chr5 44158756 44158908 -158926624 - MIR SINE MIR -17 245 79 353 223 50 36 chr5 44160115 44160254 -158925278 - MER5B DNA MER1_type -1 177 37 1760 167 7 20 chr5 44160254 44160559 -158924973 + AluJo SINE Alu 1 301 -11 248 184 20 0 chr5 44160581 44160630 -158924902 - MER5B DNA MER1_type -128 50 1 277 318 12 0 chr5 44161059 44161144 -158924388 + CT-rich Low_complexity Low_complexity 1 86 0 458 338 36 42 chr5 44161465 44161773 -158923759 + L3 LINE CR1 340 645 -932 1459 246 96 40 chr5 44161940 44162460 -158923072 + MLT1H LTR MaLR 1 549 0 327 294 52 125 chr5 44162580 44162947 -158922585 + L2 LINE L2 2933 3272 0 1952 149 71 31 chr5 44162990 44163340 -158922192 - THE1B LTR MaLR 0 364 1 424 340 85 28 chr5 44163729 44164011 -158921521 + L3 LINE CR1 1218 1515 -62 425 281 9 0 chr5 44164259 44164373 -158921159 - L2 LINE L2 -12 3301 3187 334 248 0 48 chr5 44164439 44164544 -158920988 + LTR67 LTR ERVL 457 556 -1 21 0 0 0 chr5 44164825 44164846 -158920686 + AT_rich Low_complexity Low_complexity 1 21 0 273 325 13 40 chr5 44165878 44166029 -158919503 + MIR3 SINE MIR 56 202 -6 4058 123 59 75 chr5 44166245 44167043 -158918489 - LTR1 LTR ERV1 0 785 1 1695 100 20 15 chr5 44167216 44167687 -158917845 - MER4A LTR ERV1 0 664 35 2353 60 0 7 chr5 44169544 44169852 -158915680 + AluSx SINE Alu 1 306 0 480 226 240 14 chr5 44170028 44170236 -158915296 + MIR SINE MIR 8 262 0 775 61 0 0 chr5 44170447 44170545 -158914987 + L1PA5 LINE L1 6057 6154 0 241 182 0 0 chr5 44170545 44170589 -158914943 + Charlie2 DNA MER1_type 2819 2862 0 592 314 67 37 chr5 44171905 44172500 -158913032 + L1ME3A LINE L1 4574 5186 -960 1335 160 23 0 chr5 44172503 44172722 -158912810 + AluJb SINE Alu 83 306 -6 1205 273 116 26 chr5 44172722 44173319 -158912213 + L1ME3A LINE L1 5179 5854 -316 2266 106 0 3 chr5 44173319 44173611 -158911921 + AluSx SINE Alu 1 291 -21 1205 273 116 26 chr5 44173611 44173719 -158911813 + L1ME3A LINE L1 5854 5951 -219 1111 256 55 28 chr5 44173952 44174351 -158911181 - L1MD2 LINE L1 -10 6349 5940 2268 91 10 7 chr5 44174391 44174687 -158910845 - AluY SINE Alu -14 297 1 447 19 0 0 chr5 44174739 44174791 -158910741 + (CA)n Simple_repeat Simple_repeat 1 52 0 231 294 31 19 chr5 44175029 44175189 -158910343 - L1M4 LINE L1 -2904 3242 3081 229 228 239 0 chr5 44176267 44176359 -158909173 + LTR33 LTR ERVL 1 114 -407 301 227 121 0 chr5 44176376 44176442 -158909090 + LTR16A LTR ERVL 365 438 -12 1968 263 112 37 chr5 44176452 44177257 -158908275 - HAL1 LINE L1 -37 2470 1606 2379 78 7 105 chr5 44177711 44177833 -158907699 + L1PA13 LINE L1 5794 5926 -237 1464 136 0 0 chr5 44177833 44178031 -158907501 + AluSg/x SINE Alu 84 281 -29 2379 78 7 105 chr5 44178031 44178318 -158907214 + L1PA13 LINE L1 5926 6163 0 251 254 15 0 chr5 44178375 44178442 -158907090 + (TA)n Simple_repeat Simple_repeat 1 68 0 231 286 12 12 chr5 44178607 44178691 -158906841 - LTR33 LTR ERVL -48 473 390 2870 156 102 5 chr5 44178699 44179654 -158905878 + L1M2 LINE L1 4741 5789 -523 239 203 101 0 chr5 44179659 44179728 -158905804 + L1MCa LINE L1 1995 2070 -4356 232 161 161 0 chr5 44179738 44179794 -158905738 + L1MCa LINE L1 2006 2070 -4356 306 242 0 63 chr5 44179816 44179911 -158905621 + L1MC4 LINE L1 6615 6703 -1339 360 286 13 9 chr5 44179919 44180155 -158905377 + (CATATA)n Simple_repeat Simple_repeat 1 236 0 461 308 0 0 chr5 44180159 44180480 -158905052 + (TA)n Simple_repeat Simple_repeat 1 321 0 234 214 56 45 chr5 44180525 44180614 -158904918 - L1MC4 LINE L1 -1339 6703 6614 * 299 264 0 22 chr5 44180600 44180691 -158904841 + L1MC4 LINE L1 6614 6702 -1340 759 237 36 47 chr5 44180701 44180954 -158904578 + pTR5 LTR ERV1 743 992 -1446 5623 80 12 118 chr5 44181041 44181965 -158903567 + LTR12 LTR ERV1 1 826 0 189 269 0 0 chr5 44181965 44182032 -158903500 + (TA)n Simple_repeat Simple_repeat 1 67 0 236 344 0 0 chr5 44182066 44182156 -158903376 + L1MC4 LINE L1 6614 6703 -1339 548 380 0 0 chr5 44182163 44182391 -158903141 + (CGTG)n Simple_repeat Simple_repeat 1 228 0 2495 166 69 14 chr5 44182447 44182942 -158902590 + L1MA9 LINE L1 5778 6299 -13 24 0 0 0 chr5 44182942 44182966 -158902566 + AT_rich Low_complexity Low_complexity 1 24 0 1902 161 20 0 chr5 44182987 44183113 -158902419 + AluSx SINE Alu 1 123 -189 333 0 0 0 chr5 44183113 44183150 -158902382 + (CA)n Simple_repeat Simple_repeat 2 38 0 1902 161 20 0 chr5 44183150 44183322 -158902210 + AluSx SINE Alu 123 305 -7 837 60 0 0 chr5 44183485 44183601 -158901931 + (CCA)n Simple_repeat Simple_repeat 2 117 0 25 31 0 0 chr5 44183951 44183983 -158901549 + AT_rich Low_complexity Low_complexity 1 32 0 711 245 17 33 chr5 44184202 44184443 -158901089 + L1MC5 LINE L1 7689 7925 -36 2341 97 0 3 chr5 44185599 44185908 -158899624 - AluSc SINE Alu -1 308 1 245 304 148 22 chr5 44185919 44186054 -158899478 + MLT1I LTR MaLR 18 169 -240 233 187 77 110 chr5 44186228 44186299 -158899233 + MLT1H LTR MaLR 446 515 -34 1337 205 64 53 chr5 44186299 44186660 -158898872 + MLT1A1 LTR MaLR 1 365 0 233 187 77 110 chr5 44186660 44186679 -158898853 + MLT1H LTR MaLR 515 533 -16 1530 186 26 42 chr5 44186841 44187157 -158898375 + MLT1A1 LTR MaLR 11 584 -42 258 318 24 63 chr5 44187224 44187350 -158898182 - LTR67 LTR ERVL -338 219 99 483 237 90 32 chr5 44188182 44188338 -158897194 + MLT1J LTR MaLR 3 167 -344 273 276 17 52 chr5 44188402 44188513 -158897019 + MLT1J LTR MaLR 376 482 -29 1225 267 55 32 chr5 44188513 44189038 -158896494 + MER34 LTR ERV1 1 537 -5 290 292 169 8 chr5 44189354 44189484 -158896048 + MIR SINE MIR 29 179 -83 413 208 240 8 chr5 44189532 44189657 -158895875 - MER69 DNA AcHobo -1072 154 1 374 284 155 7 chr5 44189698 44189846 -158895686 - MER91A DNA MER1_type 0 196 27 331 346 49 43 chr5 44189859 44190021 -158895511 + MER91A DNA MER1_type 14 176 -20 2661 131 85 7 chr5 44190410 44190859 -158894673 + MER31A LTR ERV1 1 484 -1 1074 38 16 33 chr5 44191099 44191282 -158894250 + (TC)n Simple_repeat Simple_repeat 1 180 0 967 58 40 6 chr5 44191306 44191480 -158894052 + (TC)n Simple_repeat Simple_repeat 1 180 0 319 199 0 31 chr5 44191678 44191769 -158893763 - L1ME LINE L1 -567 5554 5470 584 236 158 4 chr5 44192509 44192750 -158892782 - L1ME4a LINE L1 -74 6047 5770 519 265 197 18 chr5 44192802 44193091 -158892441 + MLT1J2 LTR MaLR 44 385 -65 2224 115 0 7 chr5 44193323 44193627 -158891905 - AluSq SINE Alu -11 302 1 1937 174 0 0 chr5 44193669 44193973 -158891559 + AluJb SINE Alu 1 304 -8 42 20 0 0 chr5 44194324 44194373 -158891159 + AT_rich Low_complexity Low_complexity 1 49 0 184 327 36 0 chr5 44194383 44194438 -158891094 + L2 LINE L2 15 71 -3243 2273 113 7 0 chr5 44194451 44194751 -158890781 - AluSq SINE Alu -11 302 1 319 241 55 90 chr5 44195577 44195722 -158889810 + L2 LINE L2 3174 3313 0 240 285 181 27 chr5 44195997 44196218 -158889314 - L1MC/D LINE L1 -1898 5910 5656 2159 113 3 0 chr5 44196322 44196615 -158888917 - AluSx SINE Alu -18 294 1 2465 271 68 50 chr5 44197422 44199326 -158886206 + L1ME LINE L1 8 1971 -4109 780 179 0 15 chr5 44199336 44199470 -158886062 + FLAM_A SINE Alu 10 141 -1 572 233 20 51 chr5 44199471 44199724 -158885808 + L1ME LINE L1 1996 2240 -4021 2183 180 50 61 chr5 44200292 44200327 -158885205 + LTR45B LTR ERV1 1 35 -748 1806 108 58 11 chr5 44200327 44200605 -158884927 - L1PA15 LINE L1 0 6165 5875 2183 180 50 61 chr5 44200605 44201069 -158884463 + LTR45B LTR ERV1 35 783 0 1744 169 14 0 chr5 44201279 44201558 -158883974 + AluJb SINE Alu 1 283 -29 193 291 64 82 chr5 44201942 44202052 -158883480 - L2 LINE L2 -802 2512 2405 2287 84 10 3 chr5 44202409 44202751 -158882781 + AluY SINE Alu 1 311 0 1539 206 82 20 chr5 44202922 44203325 -158882207 - MLT1C LTR MaLR 0 467 40 2524 53 3 0 chr5 44204287 44204589 -158880943 + AluY SINE Alu 1 303 -8 307 195 81 35 chr5 44206056 44206143 -158879389 - MIR SINE MIR -134 128 38 215 241 19 0 chr5 44206190 44206244 -158879288 + (TCCA)n Simple_repeat Simple_repeat 2 56 0 189 306 139 19 chr5 44206405 44206543 -158878989 + MIR SINE MIR 14 164 -68 * 748 217 150 24 chr5 44206540 44206747 -158878785 - MIR SINE MIR -25 237 5 272 207 310 9 chr5 44206947 44207063 -158878469 - L3 LINE CR1 -109 1468 1318 271 323 111 30 chr5 44207941 44208034 -158877498 - L1MC4a LINE L1 -1904 5904 5820 1787 166 0 13 chr5 44208034 44208336 -158877196 - AluJo SINE Alu -14 298 1 271 323 111 30 chr5 44208336 44208539 -158876993 - L1MC4a LINE L1 -1988 5820 5584 293 256 128 69 chr5 44208543 44208918 -158876614 - L1MC4a LINE L1 -1174 4972 4576 558 332 9 18 chr5 44209005 44209222 -158876310 + MIR SINE MIR 42 256 -6 550 245 197 0 chr5 44209357 44209504 -158876028 - MER5A DNA MER1_type -1 188 13 202 206 0 0 chr5 44209641 44209675 -158875857 + polypyrimidine Low_complexity Low_complexity 3 36 0 438 305 58 0 chr5 44210603 44210793 -158874739 - LTR16B LTR ERVL -3 461 261 448 293 88 71 chr5 44210945 44210975 -158874557 - L1MC4a LINE L1 -1904 5904 5876 2385 133 30 25 chr5 44210975 44211337 -158874195 + THE1B LTR MaLR 1 364 0 448 293 88 71 chr5 44211337 44211942 -158873590 - L1MC4a LINE L1 -1932 5876 5258 2583 46 0 3 chr5 44211971 44212276 -158873256 - AluY SINE Alu -7 304 1 612 323 5 5 chr5 44212566 44212752 -158872780 - MIR SINE MIR -65 197 12 240 282 191 18 chr5 44213923 44214033 -158871499 - L2 LINE L2 -1 3271 3143 1558 286 55 66 chr5 44214453 44215285 -158870247 + L2 LINE L2 2120 2942 -372 303 167 0 83 chr5 44215316 44215388 -158870144 - LTR33 LTR ERVL 0 521 456 724 311 91 12 chr5 44215435 44215766 -158869766 - HsTC2a DNA Tc2 -293 451 95 1591 181 24 3 chr5 44215892 44216185 -158869347 - AluJo SINE Alu -13 299 1 948 127 48 6 chr5 44216740 44216906 -158868626 - L1MA6 LINE L1 0 6300 6128 2251 122 0 0 chr5 44216907 44217211 -158868321 - AluSx SINE Alu -8 304 1 9724 151 33 6 chr5 44217233 44219922 -158865610 - L1MA4A LINE L1 -11 6994 4238 2020 108 14 14 chr5 44219922 44220200 -158865332 - AluSq SINE Alu -19 294 17 484 235 111 0 chr5 44220200 44220353 -158865179 - L1MA4A LINE L1 -3213 3635 3466 6448 62 19 47 chr5 44220361 44221340 -158864192 - SVA Other Other -2 1384 433 5829 54 11 49 chr5 44221398 44222458 -158863074 - SVA Other Other -520 866 1 2224 100 7 0 chr5 44222509 44222799 -158862733 + AluSc SINE Alu 1 292 -17 11128 196 42 73 chr5 44222799 44226365 -158859167 - L1MA4A LINE L1 -3389 3459 2 22 0 0 0 chr5 44226603 44226625 -158858907 + AT_rich Low_complexity Low_complexity 1 22 0 616 246 140 74 chr5 44227401 44227536 -158857996 - MLT1H LTR MaLR -146 403 278 2938 79 3 0 chr5 44227536 44227890 -158857642 + THE1A LTR MaLR 1 355 0 616 246 140 74 chr5 44227890 44228132 -158857400 - MLT1H LTR MaLR -271 278 1 21 0 0 0 chr5 44228812 44228833 -158856699 + AT_rich Low_complexity Low_complexity 1 21 0 1512 70 0 11 chr5 44229497 44229684 -158855848 - AluSg/x SINE Alu -6 304 120 3933 123 40 26 chr5 44229712 44230315 -158855217 - LTR36 LTR ERV1 0 611 1 395 232 46 111 chr5 44230788 44231068 -158854464 - L1ME4a LINE L1 -91 6030 5769 505 284 128 0 chr5 44231188 44231329 -158854203 + MIR3 SINE MIR 19 177 -31 189 378 104 0 chr5 44231520 44231655 -158853877 - L2 LINE L2 0 3272 3124 368 222 60 8 chr5 44231786 44231903 -158853629 - L1ME4a LINE L1 -1 6120 5998 2577 196 27 34 chr5 44232169 44232663 -158852869 - L1MB5 LINE L1 -69 6105 5603 292 170 0 0 chr5 44232663 44232710 -158852822 - Alu SINE Alu -8 294 248 2577 196 27 34 chr5 44232710 44232981 -158852551 - L1MB5 LINE L1 -571 5603 5332 1144 133 25 36 chr5 44232981 44233211 -158852321 - AluJb SINE Alu 0 312 93 729 191 22 11 chr5 44233214 44233397 -158852135 - L1MB5 LINE L1 -813 5333 5149 189 0 0 0 chr5 44233404 44233425 -158852107 + (TTG)n Simple_repeat Simple_repeat 1 21 0 303 313 100 12 chr5 44233955 44234115 -158851417 + MIR SINE MIR 89 262 0 270 289 175 26 chr5 44235139 44235253 -158850279 + MIR3 SINE MIR 76 206 -2 2060 114 0 0 chr5 44238794 44239066 -158846466 - AluSg SINE Alu -11 299 28 21 0 0 0 chr5 44239074 44239095 -158846437 + AT_rich Low_complexity Low_complexity 1 21 0 809 241 17 0 chr5 44241290 44241464 -158844068 - MER58A DNA MER1_type -1 223 47 2078 128 0 0 chr5 44241464 44241746 -158843786 + AluSx SINE Alu 1 282 -30 820 261 73 5 chr5 44241932 44242150 -158843382 - MIR SINE MIR -29 233 1 1295 158 10 5 chr5 44242203 44242406 -158843126 + AluSx SINE Alu 1 204 -108 225 234 63 81 chr5 44242504 44242615 -158842917 + MIR SINE MIR 2 110 -152 435 275 142 18 chr5 44243614 44243848 -158841684 + MIR SINE MIR 5 262 0 862 278 93 34 chr5 44245752 44246297 -158839235 - L1ME3 LINE L1 -197 5924 5346 865 313 61 17 chr5 44246435 44247078 -158838454 - L1MB5 LINE L1 -1047 5099 4429 3498 130 23 50 chr5 44247083 44247700 -158837832 - LTR9B LTR ERV1 0 644 45 548 323 88 42 chr5 44247931 44248544 -158836988 - HAL1b LINE L1 -641 707 67 524 266 137 43 chr5 44248778 44249339 -158836193 - L1MB5 LINE L1 -2797 3349 2736 545 220 68 30 chr5 44249351 44249483 -158836049 + MER5A DNA MER1_type 9 145 -44 2472 210 60 102 chr5 44249494 44250414 -158835118 - MER65-int LTR ERV1 -3567 1304 424 839 318 33 15 chr5 44250515 44250914 -158834618 + L1PA12 LINE L1 10 415 -7166 265 338 36 7 chr5 44251293 44251432 -158834100 + L1M2 LINE L1 689 831 -6018 359 335 65 82 chr5 44251580 44251750 -158833782 + L1M2 LINE L1 901 1067 -5782 1049 284 31 25 chr5 44251960 44252411 -158833121 + L1PA12 LINE L1 1781 2326 -5258 7549 180 47 25 chr5 44252412 44254527 -158831005 + L1PA12 LINE L1 2467 4686 -2898 * 16323 167 22 9 chr5 44254524 44258114 -158827418 - L1M1 LINE L1 -743 6822 3213 2200 114 3 16 chr5 44258120 44258428 -158827104 - AluSg SINE Alu -6 304 1 7316 160 32 10 chr5 44258429 44259676 -158825856 - L1M1 LINE L1 -6275 1290 17 2291 155 63 24 chr5 44259689 44260115 -158825417 - MER65A LTR ERV1 0 445 3 6401 160 21 20 chr5 44260116 44261184 -158824348 - MER70A-int LTR ERVL -2334 2689 1621 5023 170 54 21 chr5 44261184 44262288 -158823244 - MER70A-int LTR ERVL -3832 1191 1 2170 189 25 12 chr5 44262288 44262690 -158822842 - MER70A LTR ERVL 0 472 66 364 180 34 22 chr5 44262763 44262852 -158822680 - L1ME LINE L1 -5905 165 76 197 65 32 0 chr5 44263478 44263509 -158822023 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 211 240 49 0 chr5 44264288 44264363 -158821169 - MIR SINE MIR -63 145 65 2378 80 3 0 chr5 44264381 44264669 -158820863 + AluSg SINE Alu 5 293 -17 569 313 65 5 chr5 44264680 44264894 -158820638 - MIR SINE MIR -21 241 15 473 154 154 0 chr5 44266204 44266308 -158819224 + L1 LINE L1 4124 4243 -1903 16334 214 48 41 chr5 44266308 44269897 -158815635 + L1PA16 LINE L1 101 3662 -3155 2006 112 0 4 chr5 44269897 44270164 -158815368 + AluSg SINE Alu 1 266 -44 16334 214 48 41 chr5 44270164 44272436 -158813096 + L1PA16 LINE L1 3662 5983 -834 2262 100 0 3 chr5 44272436 44272735 -158812797 + AluY SINE Alu 1 298 -13 16334 214 48 41 chr5 44272735 44272886 -158812646 + L1PA16 LINE L1 5983 6131 -686 930 226 40 9 chr5 44273269 44273495 -158812037 - MLT1B LTR MaLR 0 390 158 4654 116 58 0 chr5 44273495 44274165 -158811367 + L1PA16 LINE L1 6103 6811 -6 973 242 13 17 chr5 44275519 44275750 -158809782 + MIR SINE MIR 33 262 0 198 297 47 16 chr5 44275970 44276034 -158809498 - L2 LINE L2 -1 3271 3206 1247 269 19 65 chr5 44277022 44277486 -158808046 - MER115 DNA AcHobo 0 4031 249 520 136 0 0 chr5 44279846 44279927 -158805605 - MER53 DNA DNA 0 189 109 653 236 51 60 chr5 44280306 44280522 -158805010 - MER58C DNA MER1_type -1 214 1 1811 127 0 0 chr5 44281978 44282238 -158803294 - AluSq SINE Alu -48 265 6 21 0 0 0 chr5 44282554 44282575 -158802957 + AT_rich Low_complexity Low_complexity 1 21 0 235 260 91 0 chr5 44282784 44282861 -158802671 - L1ME LINE L1 -515 5606 5523 343 247 49 0 chr5 44283311 44283429 -158802103 + MIR3 SINE MIR 72 196 -12 2479 111 5 13 chr5 44285508 44285886 -158799646 - THE1C LTR MaLR 0 375 1 9733 96 42 63 chr5 44285886 44287500 -158798032 - THE1C-int LTR MaLR 0 1580 1 2532 102 16 8 chr5 44287500 44287872 -158797660 - THE1C LTR MaLR 0 375 1 761 193 52 57 chr5 44288698 44288937 -158796595 + L1ME LINE L1 5461 5690 -472 2062 114 119 35 chr5 44288949 44289378 -158796154 + MER4C LTR ERV1 1 465 0 1961 115 150 35 chr5 44289826 44290093 -158795439 - MER65A LTR ERV1 0 445 116 405 0 0 0 chr5 44290093 44290138 -158795394 + (TG)n Simple_repeat Simple_repeat 2 46 0 1961 115 150 35 chr5 44290138 44290269 -158795263 - MER65A LTR ERV1 -329 116 1 308 250 12 38 chr5 44290377 44290501 -158795031 - MLT1G LTR MaLR 0 586 431 183 80 0 0 chr5 44290869 44290894 -158794638 + (TTGG)n Simple_repeat Simple_repeat 4 28 0 703 243 115 13 chr5 44291366 44291601 -158793931 - MIR SINE MIR -3 259 1 206 287 79 40 chr5 44293624 44293725 -158791807 + L2 LINE L2 3156 3260 -12 1444 171 4 16 chr5 44293729 44293975 -158791557 - AluSx SINE Alu -69 243 1 2229 114 3 0 chr5 44293998 44294305 -158791227 - AluSq SINE Alu -5 308 1 441 260 27 47 chr5 44294873 44295023 -158790509 + MER5A DNA MER1_type 42 188 -1 436 282 95 21 chr5 44295301 44295542 -158789990 - L1MC5 LINE L1 -60 7901 7643 2143 70 7 3 chr5 44296217 44296504 -158789028 - AluY SINE Alu -23 288 1 21 36 0 0 chr5 44297653 44297681 -158787851 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr5 44299302 44299326 -158786206 + (A)n Simple_repeat Simple_repeat 1 24 0 36 23 0 0 chr5 44300712 44300755 -158784777 + AT_rich Low_complexity Low_complexity 1 43 0 1340 195 30 50 chr5 44301624 44301927 -158783605 - AluJo SINE Alu -15 297 1 2270 116 3 0 chr5 44302703 44303014 -158782518 + AluSx SINE Alu 1 312 0 2046 140 58 5 chr5 44303121 44303500 -158782032 - Charlie1 DNA MER1_type -6 2755 2357 26 0 0 0 chr5 44307012 44307038 -158778494 + AT_rich Low_complexity Low_complexity 1 26 0 188 229 0 83 chr5 44307310 44307358 -158778174 - L2 LINE L2 -15 3257 3214 203 213 128 0 chr5 44307769 44307816 -158777716 - MIR3 SINE MIR -48 160 108 228 181 0 191 chr5 44308098 44308192 -158777340 - MIR SINE MIR -3 259 184 579 151 40 151 chr5 44310588 44310787 -158774745 + MER104 DNA MER2_type 1 177 -3 28 29 0 0 chr5 44312753 44312788 -158772744 + AT_rich Low_complexity Low_complexity 1 35 0 620 330 43 0 chr5 44312868 44313084 -158772448 + MIR SINE MIR 20 247 -15 1501 153 122 0 chr5 44314211 44314505 -158771027 + MER46B DNA MER2_type 32 236 0 326 351 157 39 chr5 44315014 44315632 -158769900 + L2 LINE L2 2197 2887 -427 1896 142 14 3 chr5 44317127 44317423 -158768109 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr5 44317797 44317828 -158767704 + AT_rich Low_complexity Low_complexity 1 31 0 747 114 79 0 chr5 44318562 44318702 -158766830 - L1MA9 LINE L1 0 6312 6162 384 277 85 21 chr5 44319291 44319432 -158766100 - MIR SINE MIR -74 188 39 2071 118 17 91 chr5 44319860 44320265 -158765267 + THE1C LTR MaLR 1 375 0 217 235 0 0 chr5 44320678 44320729 -158764803 + (CAATT)n Simple_repeat Simple_repeat 4 54 0 23 0 0 0 chr5 44321600 44321623 -158763909 + AT_rich Low_complexity Low_complexity 1 23 0 396 328 26 5 chr5 44322486 44322675 -158762857 - L1M4 LINE L1 -1072 5074 4882 26 0 0 0 chr5 44322693 44322719 -158762813 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr5 44323410 44323432 -158762100 + AT_rich Low_complexity Low_complexity 1 22 0 217 0 61 0 chr5 44325275 44325308 -158760224 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1942 158 0 3 chr5 44325973 44326271 -158759261 - AluSx SINE Alu -14 298 2 6235 134 47 60 chr5 44327308 44327665 -158757867 + Tigger3b DNA MER2_type 1 361 -2667 1617 146 31 8 chr5 44327665 44327926 -158757606 + AluJo SINE Alu 33 299 -13 6235 134 47 60 chr5 44327926 44328137 -158757395 + Tigger3b DNA MER2_type 361 573 -2455 2281 75 10 7 chr5 44328137 44328443 -158757089 - AluSx SINE Alu -5 307 1 6235 134 47 60 chr5 44328443 44328838 -158756694 + Tigger3b DNA MER2_type 573 948 -2080 2364 67 7 0 chr5 44328838 44329137 -158756395 - AluY SINE Alu -10 301 1 6235 134 47 60 chr5 44329137 44329417 -158756115 + Tigger3b DNA MER2_type 948 1230 -1 206 309 0 85 chr5 44329534 44329628 -158755904 - MIR SINE MIR -157 105 20 2100 84 0 74 chr5 44330180 44330503 -158755029 - AluSq SINE Alu -14 299 1 2312 76 0 33 chr5 44330546 44330850 -158754682 - AluSg SINE Alu -14 296 3 26 0 0 0 chr5 44330972 44330998 -158754534 + AT_rich Low_complexity Low_complexity 1 26 0 2811 237 35 30 chr5 44331638 44332441 -158753091 + L1ME2 LINE L1 5348 6154 -10 319 260 95 85 chr5 44332501 44332701 -158752831 + L1MC4 LINE L1 7830 8031 -11 1985 102 0 0 chr5 44333222 44333476 -158752056 - AluSx SINE Alu -13 299 46 300 51 0 0 chr5 44334136 44334175 -158751357 + MADE1 DNA Mariner 8 46 -34 272 304 67 28 chr5 44336128 44336333 -158749199 - L1MC4a LINE L1 -1910 5898 5680 2069 89 48 20 chr5 44336333 44336625 -158748907 + AluSg1 SINE Alu 1 300 -9 272 304 67 28 chr5 44336625 44336672 -158748860 - L1MC4a LINE L1 -2128 5680 5636 437 0 0 19 chr5 44340588 44340642 -158744890 + (TG)n Simple_repeat Simple_repeat 2 54 0 1763 142 0 47 chr5 44343015 44343339 -158742193 - AluSx SINE Alu 0 310 1 570 295 74 11 chr5 44343568 44343758 -158741774 + MIR SINE MIR 11 212 -50 395 217 322 0 chr5 44344967 44345082 -158740450 + MER5A DNA MER1_type 1 152 -37 230 220 60 0 chr5 44345676 44345726 -158739806 - MIR SINE MIR -156 106 54 192 371 133 9 chr5 44345861 44345966 -158739566 + MIR SINE MIR 14 131 -131 224 298 169 16 chr5 44346084 44346208 -158739324 + MIR SINE MIR 2 144 -118 1792 89 24 0 chr5 44347803 44348051 -158737481 - L1PA7 LINE L1 0 6154 5901 408 301 68 30 chr5 44350114 44350247 -158735285 + L2 LINE L2 3115 3252 -20 231 169 65 65 chr5 44352294 44352371 -158733161 + MIR SINE MIR 75 151 -111 414 288 102 19 chr5 44352500 44352705 -158732827 + L2 LINE L2 3091 3312 -1 1989 105 59 0 chr5 44357612 44357898 -158727634 + AluSg SINE Alu 1 303 -7 2231 113 0 19 chr5 44360235 44360553 -158724979 + AluSx SINE Alu 1 312 0 216 210 16 0 chr5 44360638 44360700 -158724832 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 2002 45 0 0 chr5 44360706 44360951 -158724581 - L1PA4 LINE L1 0 6155 5911 2158 33 7 0 chr5 44360951 44361223 -158724309 + L1PA4 LINE L1 5619 5892 -263 255 321 23 23 chr5 44361821 44361952 -158723580 + MIR3 SINE MIR 54 184 -24 448 275 25 17 chr5 44362027 44362147 -158723385 - MER5B DNA MER1_type -21 157 37 2089 145 0 3 chr5 44362396 44362700 -158722832 + AluSq SINE Alu 1 303 -10 1985 104 36 93 chr5 44362862 44363197 -158722335 + THE1B LTR MaLR 1 314 -50 832 176 0 0 chr5 44363197 44363383 -158722149 + FRAM SINE Alu 1 50 0 1985 104 36 93 chr5 44363383 44363432 -158722100 + THE1B LTR MaLR 314 364 0 349 329 186 0 chr5 44363433 44363643 -158721889 - MIR SINE MIR -8 254 6 2244 77 20 17 chr5 44364582 44364880 -158720652 + AluSq SINE Alu 1 299 -14 406 156 130 0 chr5 44367509 44367586 -158717946 - 5S rRNA rRNA -33 88 2 1323 232 169 23 chr5 44367594 44368210 -158717322 - LTR50 LTR ERVL -89 706 1 207 281 18 18 chr5 44368657 44368714 -158716818 - L2 LINE L2 -92 3180 3124 437 304 69 20 chr5 44368807 44368901 -158716631 + MIR SINE MIR 13 101 -161 2047 90 0 22 chr5 44368901 44369179 -158716353 + AluSg SINE Alu 35 306 -4 437 304 69 20 chr5 44369179 44369288 -158716244 + MIR SINE MIR 101 226 -36 330 275 63 41 chr5 44372358 44372506 -158713026 - MIR3 SINE MIR -21 187 37 368 221 30 0 chr5 44373001 44373132 -158712400 + (TA)n Simple_repeat Simple_repeat 2 136 0 2130 109 0 3 chr5 44375302 44375596 -158709936 + AluSx SINE Alu 1 293 -19 21 0 0 0 chr5 44375620 44375641 -158709891 + AT_rich Low_complexity Low_complexity 1 21 0 201 176 0 0 chr5 44377406 44377440 -158708092 + A-rich Low_complexity Low_complexity 1 34 0 210 200 67 0 chr5 44377538 44377583 -158707949 - L2 LINE L2 -1 3271 3224 187 235 0 39 chr5 44378183 44378234 -158707298 + L3 LINE CR1 1524 1572 -5 23 0 0 0 chr5 44379919 44379942 -158705590 + AT_rich Low_complexity Low_complexity 1 23 0 1784 136 55 27 chr5 44380599 44380929 -158704603 + MER44D DNA MER2_type 1 609 0 2079 125 34 0 chr5 44385649 44385944 -158699588 - AluSx SINE Alu -7 305 1 1985 135 0 3 chr5 44389207 44389513 -158696019 - AluSx SINE Alu 0 305 1 183 42 0 0 chr5 44390889 44390913 -158694619 + (CAA)n Simple_repeat Simple_repeat 2 25 0 283 246 82 27 chr5 44391129 44391239 -158694293 + MER5A DNA MER1_type 48 163 -26 342 245 98 0 chr5 44391497 44391599 -158693933 - MIR SINE MIR -3 259 148 1284 180 150 26 chr5 44394491 44394797 -158690735 - MER2 DNA MER2_type 0 344 1 245 254 211 35 chr5 44396499 44396641 -158688891 + MIR SINE MIR 8 174 -88 341 259 218 28 chr5 44396719 44396935 -158688597 + MIR SINE MIR 6 262 0 302 181 71 0 chr5 44397115 44397233 -158688299 + (TA)n Simple_repeat Simple_repeat 2 110 -27 1637 146 60 86 chr5 44397233 44397387 -158688145 + THE1C LTR MaLR 1 157 -218 2277 103 0 7 chr5 44397387 44397689 -158687843 - AluSq SINE Alu -13 300 1 1637 146 60 86 chr5 44397689 44397874 -158687658 + THE1C LTR MaLR 157 331 -44 2028 117 7 7 chr5 44397874 44398165 -158687367 - AluSx SINE Alu -16 296 6 1637 146 60 86 chr5 44398165 44398209 -158687323 + THE1C LTR MaLR 331 375 0 302 181 71 0 chr5 44398209 44398217 -158687315 + (TA)n Simple_repeat Simple_repeat 110 137 0 2058 146 0 0 chr5 44398596 44398891 -158686641 - AluSx SINE Alu -17 295 1 444 272 41 59 chr5 44399384 44399553 -158685979 + MER5B DNA MER1_type 8 173 -5 2253 101 0 13 chr5 44400056 44400373 -158685159 - AluSq SINE Alu 0 313 1 218 338 91 0 chr5 44401721 44401798 -158683734 + MER91A DNA MER1_type 66 149 -47 21 0 0 0 chr5 44402009 44402030 -158683502 + AT_rich Low_complexity Low_complexity 1 21 0 864 254 8 54 chr5 44402399 44402517 -158683015 + MIR SINE MIR 31 134 -128 1707 178 60 97 chr5 44402517 44403000 -158682532 - MLT1C LTR MaLR -2 465 1 864 254 8 54 chr5 44403000 44403121 -158682411 + MIR SINE MIR 134 259 -3 823 266 80 0 chr5 44403417 44403654 -158681878 + MIR SINE MIR 7 262 0 382 286 36 85 chr5 44403812 44404060 -158681472 - L1MC4a LINE L1 -1754 6054 5819 1302 257 79 23 chr5 44404076 44404546 -158680986 - L1MC4a LINE L1 -2050 5758 5263 714 244 27 58 chr5 44404703 44404961 -158680571 + MIR SINE MIR 13 262 0 382 350 25 19 chr5 44405187 44405347 -158680185 - L2 LINE L2 -1 3271 3111 489 289 20 0 chr5 44405388 44405540 -158679992 + L2 LINE L2 1525 1679 -1635 276 200 89 22 chr5 44405564 44405654 -158679878 + L2 LINE L2 2152 2247 -1067 704 260 100 111 chr5 44405688 44406092 -158679440 + L2 LINE L2 2189 2596 -717 2373 53 0 0 chr5 44406092 44406404 -158679128 - AluY SINE Alu 0 312 1 704 260 100 111 chr5 44406404 44406862 -158678670 + L2 LINE L2 2596 3036 -277 1001 264 100 46 chr5 44406884 44407366 -158678166 - MLT1G1 LTR MaLR -15 580 73 400 274 78 69 chr5 44407455 44407659 -158677873 + L2 LINE L2 3095 3300 -13 283 295 61 43 chr5 44408788 44408926 -158676606 + MIR3 SINE MIR 15 153 -67 2444 124 17 0 chr5 44409092 44409446 -158676086 + MLT1B LTR MaLR 31 390 0 250 221 38 99 chr5 44410283 44410414 -158675118 - L2 LINE L2 0 3313 3191 187 224 209 0 chr5 44410427 44410494 -158675038 + L2 LINE L2 3208 3288 -25 507 265 55 72 chr5 44410627 44410808 -158674724 - MER5B DNA MER1_type 0 178 1 201 247 144 41 chr5 44411231 44411328 -158674204 - L2 LINE L2 -2 3311 3205 180 0 0 0 chr5 44411371 44411391 -158674141 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2028 192 73 51 chr5 44411755 44412245 -158673287 - MLT1D LTR MaLR -4 501 1 836 344 105 37 chr5 44412269 44412799 -158672733 - L2 LINE L2 -528 2786 2294 2021 154 152 13 chr5 44412799 44413175 -158672357 + MSTA LTR MaLR 1 428 0 9528 146 30 29 chr5 44413177 44414752 -158670780 + MSTA-int LTR MaLR 3 1580 0 1802 178 152 13 chr5 44414752 44415128 -158670404 + MSTA LTR MaLR 1 428 0 836 344 105 37 chr5 44415128 44415628 -158669904 - L2 LINE L2 -1019 2295 1681 42684 62 2 0 chr5 44415926 44422048 -158663484 - L1PA5 LINE L1 -3 6151 17 226 240 0 0 chr5 44424880 44424930 -158660602 + L2 LINE L2 3264 3313 0 673 137 170 142 chr5 44425103 44425157 -158660375 + MER20 DNA MER1_type 1 52 -167 2449 70 0 0 chr5 44425157 44425455 -158660077 + AluY SINE Alu 9 306 -5 673 137 170 142 chr5 44425455 44425612 -158659920 + MER20 DNA MER1_type 52 218 -1 355 239 37 175 chr5 44427812 44428109 -158657423 + Charlie2 DNA MER1_type 1 256 -2606 2408 200 103 65 chr5 44428172 44428805 -158656727 + Charlie2 DNA MER1_type 1902 2582 -280 611 154 0 0 chr5 44428805 44428896 -158656636 + L1MC1 LINE L1 6243 6333 0 2408 200 103 65 chr5 44428896 44429187 -158656345 + Charlie2 DNA MER1_type 2582 2861 -1 1537 191 115 19 chr5 44429390 44429704 -158655828 + MER2 DNA MER2_type 1 344 0 5539 82 26 52 chr5 44430112 44431510 -158654022 - SVA Other Other -518 1047 14 189 0 0 0 chr5 44431537 44431558 -158653974 + (GGGAGA)n Simple_repeat Simple_repeat 4 24 0 434 275 83 31 chr5 44431721 44431914 -158653618 - MLT1H LTR MaLR -322 227 25 21 57 0 0 chr5 44431946 44431981 -158653551 + AT_rich Low_complexity Low_complexity 1 35 0 22 70 0 0 chr5 44432601 44432644 -158652888 + AT_rich Low_complexity Low_complexity 1 43 0 918 228 67 12 chr5 44434772 44435026 -158650506 - MER46C DNA MER2_type -11 327 60 942 235 78 0 chr5 44435585 44435802 -158649730 + MIR SINE MIR 29 262 0 579 333 89 48 chr5 44437298 44437980 -158647552 + L2 LINE L2 2138 2847 -467 316 348 142 19 chr5 44438480 44438790 -158646742 - L2 LINE L2 -473 2841 2494 777 296 28 16 chr5 44438791 44439038 -158646494 + MIR SINE MIR 1 250 -12 321 351 34 58 chr5 44439142 44439323 -158646209 - L2 LINE L2 -925 2389 2216 2270 94 3 0 chr5 44439323 44439620 -158645912 - AluSg SINE Alu -11 299 2 321 351 34 58 chr5 44439620 44439731 -158645801 - L2 LINE L2 -1098 2216 2104 333 228 291 8 chr5 44439767 44439894 -158645638 - MLT1F LTR MaLR 0 542 380 10472 227 58 31 chr5 44440710 44442126 -158643406 - L1 LINE L1 -1416 5690 4314 1599 185 58 21 chr5 44442126 44442456 -158643076 + MER2 DNA MER2_type 1 342 -2 10472 227 58 31 chr5 44442456 44445795 -158639737 - L1 LINE L1 -2792 4314 1104 253 398 0 0 chr5 44445914 44446002 -158639530 - L2 LINE L2 -206 3066 2979 8642 139 14 0 chr5 44446575 44448771 -158636761 + L1PA11 LINE L1 3971 6170 -4 574 274 80 25 chr5 44448784 44448985 -158636547 - MIR SINE MIR -49 213 2 368 293 109 89 chr5 44450098 44450491 -158635041 - L2 LINE L2 -6 3307 2907 1747 262 119 104 chr5 44450517 44450622 -158634910 - L2 LINE L2 -467 2847 2745 266 0 0 29 chr5 44450622 44450657 -158634875 + (TTTAA)n Simple_repeat Simple_repeat 2 35 0 2207 100 3 0 chr5 44450657 44450947 -158634585 - AluSp SINE Alu -22 291 1 1747 262 119 104 chr5 44450947 44452012 -158633520 - L2 LINE L2 -568 2746 1658 356 355 41 29 chr5 44452609 44452781 -158632751 + MIR3 SINE MIR 7 180 -28 446 224 44 2 chr5 44452787 44452913 -158632619 - L1ME2 LINE L1 -1 6333 6040 2598 213 37 12 chr5 44453042 44453630 -158631902 - L1ME2 LINE L1 -128 6036 5434 270 261 70 57 chr5 44454459 44454616 -158630916 + MER117 DNA MER1_type 1 159 -38 198 143 0 0 chr5 44455821 44455856 -158629676 + (TG)n Simple_repeat Simple_repeat 1 35 0 811 271 49 26 chr5 44456208 44456452 -158629080 + MIR SINE MIR 12 262 0 522 275 75 31 chr5 44457069 44457229 -158628303 + MER91B DNA MER1_type 15 181 -9 254 330 45 62 chr5 44457429 44457605 -158627927 - MER5B DNA MER1_type -5 173 1 391 304 0 26 chr5 44457668 44457783 -158627749 + MIR3 SINE MIR 76 187 -21 21 36 0 0 chr5 44458179 44458207 -158627325 + AT_rich Low_complexity Low_complexity 1 28 0 186 320 77 0 chr5 44458636 44458714 -158626818 + MIR SINE MIR 4 87 -175 2214 115 0 7 chr5 44458931 44459236 -158626296 - AluSx SINE Alu -9 303 1 3033 181 56 3 chr5 44460898 44461471 -158624061 - MER6A DNA MER2_type -2 603 1 228 141 47 47 chr5 44461527 44461638 -158623894 + (TATAA)n Simple_repeat Simple_repeat 1 111 0 235 268 14 0 chr5 44463305 44463376 -158622156 - L1ME2 LINE L1 -860 5286 5215 292 155 35 0 chr5 44463427 44463485 -158622047 - L1MD3 LINE L1 -11 7984 7925 1655 226 52 30 chr5 44463516 44463976 -158621556 - L1MC4 LINE L1 -16 8026 7320 369 270 63 31 chr5 44463979 44464138 -158621394 - L1ME2 LINE L1 -984 5162 4999 646 250 33 0 chr5 44464154 44464338 -158621194 + L1M4 LINE L1 4066 4255 -1891 297 324 118 11 chr5 44464338 44464600 -158620932 - L1ME2 LINE L1 -3604 2542 2253 1886 167 3 0 chr5 44464676 44464982 -158620550 - AluSx SINE Alu -5 307 1 357 255 143 31 chr5 44464986 44465147 -158620385 - L2 LINE L2 -1 3312 3134 1725 218 113 73 chr5 44465288 44465907 -158619625 - L1ME1 LINE L1 -12 6223 5580 4436 235 147 11 chr5 44465907 44467792 -158617740 - L1ME1 LINE L1 -1917 4298 2171 14036 196 44 27 chr5 44467812 44472019 -158613513 - L1MA6 LINE L1 -5 6997 2720 508 217 42 0 chr5 44472036 44472156 -158613376 - L1MA6 LINE L1 -6608 241 117 * 1243 280 63 95 chr5 44472135 44472755 -158612777 - L1ME1 LINE L1 -4213 2816 2252 183 42 0 0 chr5 44472755 44472779 -158612753 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1243 280 63 95 chr5 44472779 44473368 -158612164 - L1ME1 LINE L1 -4777 2252 1646 377 290 66 50 chr5 44473559 44473862 -158611670 - L1MEd LINE L1 -4908 1211 904 274 0 73 0 chr5 44474617 44474658 -158610874 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 470 210 10 0 chr5 44474870 44474970 -158610562 - L1MA8 LINE L1 -201 6090 5990 305 278 89 58 chr5 44475884 44476075 -158609457 + L2 LINE L2 3117 3313 0 31 76 0 0 chr5 44476580 44476646 -158608886 + AT_rich Low_complexity Low_complexity 1 66 0 221 231 0 31 chr5 44476712 44476777 -158608755 + (TA)n Simple_repeat Simple_repeat 2 64 0 3128 144 16 63 chr5 44477130 44477747 -158607785 - L1PB4 LINE L1 -2 6154 5567 647 204 11 28 chr5 44477747 44477928 -158607604 + L1P LINE L1 4977 5154 -992 26 30 0 0 chr5 44478265 44478298 -158607234 + AT_rich Low_complexity Low_complexity 1 33 0 576 317 73 76 chr5 44478499 44479036 -158606496 - L1MEd LINE L1 -5050 1069 535 252 250 0 0 chr5 44479565 44479621 -158605911 - MER5B DNA MER1_type -121 57 2 22 0 0 0 chr5 44480125 44480147 -158605385 + AT_rich Low_complexity Low_complexity 1 22 0 411 209 15 26 chr5 44480561 44480686 -158604846 + L1MA4A LINE L1 5983 6122 -182 216 255 0 0 chr5 44480891 44480942 -158604590 + GA-rich Low_complexity Low_complexity 2 52 0 25 51 0 0 chr5 44481138 44481177 -158604355 + AT_rich Low_complexity Low_complexity 1 39 0 856 154 58 19 chr5 44482314 44482470 -158603062 + THE1C LTR MaLR 1 162 -213 182 308 128 34 chr5 44482658 44482775 -158602757 + MIR SINE MIR 78 205 -57 804 152 22 22 chr5 44482937 44483172 -158602360 + GA-rich Low_complexity Low_complexity 1 235 0 629 73 37 9 chr5 44483192 44483301 -158602231 + (GAAA)n Simple_repeat Simple_repeat 1 112 0 33240 51 2 1 chr5 44483301 44489446 -158596086 + L1PA5 LINE L1 2 6150 -4 204 125 0 0 chr5 44489448 44489480 -158596052 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 185 182 0 0 chr5 44490823 44490856 -158594676 - L2 LINE L2 -220 3052 3020 2166 105 0 0 chr5 44491046 44491322 -158594210 + AluSg SINE Alu 22 297 -13 2733 59 15 6 chr5 44491927 44492265 -158593267 - SVA Other Other -339 1047 707 2411 61 3 23 chr5 44492552 44492862 -158592670 - AluY SINE Alu -5 306 3 787 228 41 0 chr5 44493020 44493191 -158592341 - MER5B DNA MER1_type 0 178 1 21 36 0 0 chr5 44494205 44494233 -158591299 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr5 44494297 44494324 -158591208 + (CA)n Simple_repeat Simple_repeat 2 28 0 2404 93 0 0 chr5 44495902 44496212 -158589320 + AluY SINE Alu 1 310 -1 2259 98 7 0 chr5 44496386 44496683 -158588849 + AluSq SINE Alu 1 299 -14 1403 190 52 35 chr5 44496732 44497022 -158588510 + AluJo SINE Alu 14 308 -4 470 314 142 34 chr5 44497025 44497462 -158588070 - L1ME4a LINE L1 -59 6062 5579 494 31 16 0 chr5 44497831 44497895 -158587637 + (ATG)n Simple_repeat Simple_repeat 2 66 0 213 319 66 11 chr5 44497897 44497988 -158587544 + MIR SINE MIR 159 254 -8 447 365 19 9 chr5 44498074 44498288 -158587244 - MIR SINE MIR -40 222 7 305 250 36 0 chr5 44499378 44499462 -158586070 - L2 LINE L2 0 3272 3186 484 179 278 40 chr5 44499497 44499571 -158585961 - MER5A DNA MER1_type -1 188 133 2101 94 0 47 chr5 44499571 44499746 -158585786 - AluSq SINE Alu 0 308 152 2357 88 0 10 chr5 44499746 44500054 -158585478 - AluY SINE Alu -6 305 1 2101 94 0 47 chr5 44500054 44500200 -158585332 - AluSq SINE Alu -156 152 1 484 179 278 40 chr5 44500200 44500275 -158585257 - MER5A DNA MER1_type -56 133 2 282 288 24 56 chr5 44500440 44500565 -158584967 - MER5B DNA MER1_type 0 178 58 268 298 89 21 chr5 44500541 44500781 -158584751 - L2 LINE L2 -267 3046 2793 * 924 226 21 29 chr5 44500781 44501024 -158584508 - MLT1A1 LTR MaLR 0 365 125 627 155 9 17 chr5 44501185 44501301 -158584231 - MLT1A1 LTR MaLR -244 121 7 185 262 0 66 chr5 44501326 44501387 -158584145 - L2 LINE L2 -558 2756 2700 546 285 57 42 chr5 44502633 44503452 -158582080 - L1ME LINE L1 -504 5617 4793 2011 131 0 3 chr5 44503480 44503790 -158581742 - AluSx SINE Alu 0 309 1 369 0 0 0 chr5 44503882 44503923 -158581609 + (TG)n Simple_repeat Simple_repeat 2 42 0 1800 88 0 8 chr5 44503942 44504191 -158581341 - L1PA8A LINE L1 0 6131 5885 401 290 0 0 chr5 44504307 44504407 -158581125 - MLT1I LTR MaLR -231 178 79 290 298 35 7 chr5 44504520 44504661 -158580871 - HAL1 LINE L1 -860 1647 1503 906 249 15 0 chr5 44504822 44505027 -158580505 - MER58A DNA MER1_type -16 208 1 229 256 49 82 chr5 44505045 44505277 -158580255 - L1MEd LINE L1 -4910 1209 988 497 220 28 0 chr5 44505277 44505386 -158580146 - MER81 DNA DNA -2 112 1 229 256 49 82 chr5 44505386 44505458 -158580074 - L1MEd LINE L1 -5131 988 915 301 207 0 0 chr5 44505979 44506037 -158579495 - MER20 DNA MER1_type -61 158 101 590 187 12 102 chr5 44506056 44506222 -158579310 - MER20 DNA MER1_type -68 151 1 2240 129 0 0 chr5 44506633 44506942 -158578590 - AluSx SINE Alu -3 309 1 941 134 70 6 chr5 44507117 44507288 -158578244 + MER5A DNA MER1_type 1 182 -7 455 311 37 6 chr5 44507325 44507486 -158578046 - MER5B DNA MER1_type 0 178 13 411 293 131 15 chr5 44507602 44507800 -158577732 + MIR SINE MIR 32 252 -10 346 270 42 69 chr5 44509779 44509968 -158575564 + L1MC4 LINE L1 7853 8036 -6 4665 97 7 10 chr5 44510836 44511538 -158573994 + L1PA12 LINE L1 5427 6126 -42 286 192 0 64 chr5 44511702 44511780 -158573752 + L1PA13 LINE L1 6074 6146 -17 567 275 144 18 chr5 44512295 44512517 -158573015 - MIR SINE MIR 0 262 13 24 32 0 0 chr5 44512804 44512835 -158572697 + AT_rich Low_complexity Low_complexity 1 31 0 2258 60 0 3 chr5 44513069 44513397 -158572135 - AluY SINE Alu 0 327 1 2229 141 24 27 chr5 44515039 44515415 -158570117 - THE1C LTR MaLR 0 375 1 963 257 9 0 chr5 44515772 44515994 -158569538 + MER58A DNA MER1_type 1 224 0 1010 185 0 38 chr5 44516138 44516349 -158569183 + MER3 DNA MER1_type 4 206 -3 1949 132 7 0 chr5 44516425 44516705 -158568827 - AluSx SINE Alu -30 282 1 456 176 0 0 chr5 44516705 44516790 -158568742 - L1MB3 LINE L1 -275 5908 5824 396 0 0 0 chr5 44517343 44517387 -158568145 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 200 200 18 91 chr5 44517472 44517527 -158568005 + L2 LINE L2 3217 3267 -5 378 0 0 0 chr5 44518161 44518203 -158567329 + (TA)n Simple_repeat Simple_repeat 2 43 0 801 227 134 28 chr5 44518209 44518425 -158567107 - MIR SINE MIR -22 240 2 320 361 27 33 chr5 44518452 44518635 -158566897 - L1MC4a LINE L1 -1910 5898 5717 2259 108 0 3 chr5 44519375 44519672 -158565860 + AluSq SINE Alu 1 296 -17 17296 44 0 0 chr5 44520205 44523134 -158562398 + L1PA5 LINE L1 3223 6152 -2 231 273 0 0 chr5 44523564 44523619 -158561913 - MER91 DNA MER1_type -77 63 9 7451 190 8 12 chr5 44523939 44526282 -158559250 - L1PA15 LINE L1 -2 6163 3820 200 163 23 0 chr5 44527026 44527069 -158558463 + (TA)n Simple_repeat Simple_repeat 2 45 0 594 65 54 0 chr5 44527095 44527188 -158558344 - L1MB3 LINE L1 -2 6181 6084 501 295 145 10 chr5 44527213 44527406 -158558126 - L3 LINE CR1 -810 767 549 275 326 97 35 chr5 44528367 44528511 -158557021 - MIR SINE MIR -45 217 65 952 202 35 5 chr5 44529244 44529447 -158556085 - MER3 DNA MER1_type 0 209 1 321 26 0 0 chr5 44530202 44530240 -158555292 + (TTA)n Simple_repeat Simple_repeat 2 39 0 4704 55 5 0 chr5 44530240 44530825 -158554707 - L1PA8 LINE L1 -19 6153 5566 645 271 0 6 chr5 44531296 44531462 -158554070 + Charlie1 DNA MER1_type 1 165 -2596 * 1637 160 128 2 chr5 44531457 44531856 -158553676 + Charlie1 DNA MER1_type 2313 2761 0 5037 20 0 7 chr5 44532134 44532722 -158552810 + L1PA2 LINE L1 5566 6149 -6 310 21 21 21 chr5 44532725 44532773 -158552759 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 236 344 45 57 chr5 44533764 44533921 -158551611 + L2 LINE L2 3099 3253 -19 252 275 0 25 chr5 44533934 44534014 -158551518 - MIR SINE MIR -4 258 181 243 79 0 0 chr5 44534105 44534143 -158551389 + (T)n Simple_repeat Simple_repeat 1 38 0 354 98 0 0 chr5 44534395 44534446 -158551086 + (TG)n Simple_repeat Simple_repeat 2 52 0 308 189 14 0 chr5 44534691 44534765 -158550767 + (TA)n Simple_repeat Simple_repeat 2 76 0 1785 201 63 36 chr5 44534765 44535238 -158550294 - MLT1D LTR MaLR -19 486 1 383 247 51 51 chr5 44535282 44535460 -158550072 + MER5B DNA MER1_type 1 178 0 445 281 62 0 chr5 44535525 44535685 -158549847 + MIR SINE MIR 91 260 -2 467 295 114 44 chr5 44537700 44538131 -158547401 - L1MC4 LINE L1 -5 8037 7577 358 251 216 8 chr5 44538453 44538586 -158546946 + MER5A DNA MER1_type 26 188 -1 834 267 40 25 chr5 44539661 44540017 -158545515 - MER93b LTR ERV1 -2 401 12 203 143 0 24 chr5 44540032 44540074 -158545458 + (CATA)n Simple_repeat Simple_repeat 4 44 0 29 0 0 0 chr5 44542133 44542162 -158543370 + AT_rich Low_complexity Low_complexity 1 29 0 1413 98 24 0 chr5 44542162 44542367 -158543165 - L1PA10 LINE L1 0 6168 5959 615 335 88 20 chr5 44542907 44543203 -158542329 - L2 LINE L2 -4 3268 2953 1966 115 0 17 chr5 44543230 44543574 -158541958 - AluSq SINE Alu 0 341 3 596 273 112 8 chr5 44543973 44544240 -158541292 - MLT1J LTR MaLR -147 364 70 597 178 27 111 chr5 44544279 44544504 -158541028 - MER58C DNA MER1_type -6 209 4 184 263 171 26 chr5 44544599 44544675 -158540857 + L2 LINE L2 3186 3272 0 1899 177 0 16 chr5 44544760 44545163 -158540369 - AluJo SINE Alu 0 398 1 731 189 8 0 chr5 44546574 44546701 -158538831 + MIR SINE MIR 61 188 -74 22 88 0 0 chr5 44546727 44546784 -158538748 + AT_rich Low_complexity Low_complexity 1 57 0 582 300 85 0 chr5 44547575 44547775 -158537757 + MIR SINE MIR 14 230 -32 233 302 221 34 chr5 44547859 44548008 -158537524 + MIR3 SINE MIR 3 179 -29 1308 120 29 19 chr5 44548681 44548890 -158536642 + L1PA10 LINE L1 5955 6165 -3 1248 233 58 25 chr5 44549066 44549466 -158536066 - MLT1C LTR MaLR 0 467 55 21 0 0 0 chr5 44550022 44550043 -158535489 + AT_rich Low_complexity Low_complexity 1 21 0 4120 136 26 11 chr5 44550075 44550346 -158535186 - L1MB3 LINE L1 -2 6181 5915 2221 113 0 3 chr5 44550346 44550639 -158534893 - AluSx SINE Alu -20 292 1 4120 136 26 11 chr5 44550639 44551109 -158534423 - L1MB3 LINE L1 -268 5915 5429 261 261 267 12 chr5 44551979 44552144 -158533388 + MIR SINE MIR 5 211 -51 1819 167 0 19 chr5 44552947 44553264 -158532268 - AluJo SINE Alu -1 311 1 2364 57 40 3 chr5 44553675 44553975 -158531557 + AluY SINE Alu 1 311 0 624 239 0 0 chr5 44554435 44554552 -158530980 - FLAM_A SINE Alu -16 117 1 2289 87 3 10 chr5 44555653 44555952 -158529580 + AluSx SINE Alu 1 297 -15 235 71 48 0 chr5 44556216 44556258 -158529274 + (TG)n Simple_repeat Simple_repeat 1 44 0 634 192 148 16 chr5 44557315 44557497 -158528035 - MER20 DNA MER1_type 0 219 14 812 245 30 55 chr5 44559316 44559553 -158525979 - MIR SINE MIR -15 247 17 681 274 101 14 chr5 44559839 44560047 -158525485 - MIR SINE MIR -31 231 6 248 339 142 0 chr5 44560926 44561053 -158524479 + MIR SINE MIR 117 261 -1 1197 154 48 0 chr5 44563846 44564054 -158521478 + MER20 DNA MER1_type 1 218 -1 246 227 174 45 chr5 44565738 44565870 -158519662 - L1MC/D LINE L1 -1984 5824 5676 32 0 0 0 chr5 44566142 44566174 -158519358 + AT_rich Low_complexity Low_complexity 1 32 0 180 77 0 0 chr5 44566174 44566200 -158519332 + (CATATA)n Simple_repeat Simple_repeat 2 27 0 201 245 29 29 chr5 44566374 44566441 -158519091 + (TATATG)n Simple_repeat Simple_repeat 1 70 -32 1716 156 126 3 chr5 44566441 44566767 -158518765 - MER47A DNA MER2_type 0 366 1 201 245 29 29 chr5 44566767 44566801 -158518731 + (TATATG)n Simple_repeat Simple_repeat 69 102 0 351 328 94 16 chr5 44566988 44567180 -158518352 + MIR SINE MIR 29 235 -27 375 281 231 5 chr5 44568305 44568508 -158517024 - MIR SINE MIR 0 262 14 182 234 141 0 chr5 44568638 44568702 -158516830 + L2 LINE L2 3159 3231 -82 2135 96 51 0 chr5 44568787 44569080 -158516452 + AluSx SINE Alu 1 308 -4 327 49 0 0 chr5 44570692 44570733 -158514799 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 1877 171 10 16 chr5 44570733 44571042 -158514490 - AluJo SINE Alu -5 307 1 529 209 70 6 chr5 44571087 44571245 -158514287 - HAL1b LINE L1 -900 448 281 216 0 0 0 chr5 44574486 44574510 -158511022 + (CA)n Simple_repeat Simple_repeat 1 24 0 399 270 26 26 chr5 44576326 44576441 -158509091 - MER5A DNA MER1_type -74 115 1 2188 83 45 3 chr5 44576449 44576738 -158508794 + AluSq SINE Alu 4 304 -9 203 269 0 0 chr5 44577292 44577344 -158508188 + T-rich Low_complexity Low_complexity 3 54 0 21 57 0 0 chr5 44577405 44577440 -158508092 + AT_rich Low_complexity Low_complexity 1 35 0 629 286 42 9 chr5 44578264 44578477 -158507055 + MIR SINE MIR 17 236 -26 21 0 0 0 chr5 44578498 44578519 -158507013 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr5 44578614 44578640 -158506892 + (A)n Simple_repeat Simple_repeat 1 26 0 2075 94 0 0 chr5 44578834 44579101 -158506431 - AluSc SINE Alu -8 301 35 595 137 0 17 chr5 44579635 44579752 -158505780 + (TA)n Simple_repeat Simple_repeat 2 116 0 31 44 0 0 chr5 44580346 44580391 -158505141 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr5 44581146 44581168 -158504364 + AT_rich Low_complexity Low_complexity 1 22 0 372 303 0 80 chr5 44581325 44581513 -158504019 + MER5A DNA MER1_type 1 173 -16 854 85 0 2 chr5 44581991 44582237 -158503295 + AluSp SINE Alu 1 283 -30 633 61 0 0 chr5 44582980 44583062 -158502470 + (CA)n Simple_repeat Simple_repeat 1 82 0 532 330 215 20 chr5 44583099 44583320 -158502212 - L2 LINE L2 -399 2915 2738 726 168 0 0 chr5 44583320 44583457 -158502075 + L1MB1 LINE L1 6032 6168 0 532 330 215 20 chr5 44583457 44583783 -158501749 - L2 LINE L2 -576 2738 2261 737 174 55 101 chr5 44583890 44584109 -158501423 - MER3 DNA MER1_type 0 209 1 246 346 44 44 chr5 44584209 44584345 -158501187 + L2 LINE L2 3137 3272 0 467 332 24 100 chr5 44585170 44585550 -158499982 - L2 LINE L2 -16 3256 2906 1063 120 0 3 chr5 44585553 44585798 -158499734 + AluSx SINE Alu 1 310 0 826 243 53 28 chr5 44586028 44586275 -158499257 + MIR SINE MIR 9 261 -1 310 296 40 32 chr5 44586759 44586884 -158498648 - MIR SINE MIR -110 152 27 190 300 0 0 chr5 44586928 44586978 -158498554 + MIR SINE MIR 203 252 -10 386 299 83 7 chr5 44587055 44587199 -158498333 + MER103 DNA DNA 11 165 -1 396 307 100 7 chr5 44587826 44587976 -158497556 + MIR3 SINE MIR 39 202 -6 2387 100 3 0 chr5 44588882 44589193 -158496339 + AluSx SINE Alu 1 312 0 323 270 34 81 chr5 44590626 44590774 -158494758 + MIR3 SINE MIR 10 150 -58 5521 167 25 9 chr5 44591043 44592868 -158492664 + L1PA16 LINE L1 4313 6157 -9 2217 116 0 0 chr5 44592874 44593168 -158492364 - AluSx SINE Alu -18 294 1 1197 169 0 0 chr5 44593794 44593983 -158491549 - MER5A DNA MER1_type 0 189 1 2033 120 14 7 chr5 44594033 44594324 -158491208 - AluSx SINE Alu -17 295 3 706 342 78 33 chr5 44594384 44594870 -158490662 - L2 LINE L2 -337 2977 2470 1176 84 0 0 chr5 44595626 44595769 -158489763 - AluSq/x SINE Alu -170 143 1 261 57 0 0 chr5 44598040 44598075 -158487457 + (GA)n Simple_repeat Simple_repeat 2 36 0 524 93 40 0 chr5 44598208 44598283 -158487249 - MADE1 DNA Mariner 0 80 3 4865 162 27 25 chr5 44598363 44598870 -158486662 - L1PB4 LINE L1 0 6156 5652 2175 118 7 0 chr5 44598870 44599176 -158486356 - AluSq SINE Alu -5 308 1 4865 162 27 25 chr5 44599176 44600203 -158485329 - L1PB4 LINE L1 -504 5652 4628 1877 146 37 0 chr5 44600615 44600909 -158484623 + AluSq SINE Alu 1 305 -8 366 273 189 54 chr5 44600913 44601173 -158484359 + MER102b DNA MER1_type 38 332 -9 471 276 113 49 chr5 44602413 44602638 -158482894 + L1MC4a LINE L1 5340 5549 -2259 2307 63 14 3 chr5 44602638 44602925 -158482607 - AluSc SINE Alu -19 290 1 471 276 113 49 chr5 44602925 44603105 -158482427 + L1MC4a LINE L1 5549 5771 -2037 * 2348 194 68 20 chr5 44603074 44603635 -158481897 + L1MB8 LINE L1 5574 6161 -17 408 278 30 35 chr5 44603647 44603845 -158481687 + L1MC4a LINE L1 5734 5930 -1878 22 0 0 0 chr5 44604205 44604227 -158481305 + AT_rich Low_complexity Low_complexity 1 22 0 314 366 24 30 chr5 44604578 44604782 -158480750 - MIR SINE MIR -52 210 7 248 333 5 0 chr5 44605118 44605200 -158480332 - MIR SINE MIR -65 143 60 262 333 14 42 chr5 44605289 44605433 -158480099 - L2 LINE L2 -1504 1810 1671 214 207 0 69 chr5 44605463 44605521 -158480011 + L2 LINE L2 3218 3271 -1 185 284 86 0 chr5 44605715 44605796 -158479736 - L2 LINE L2 -1900 1414 1327 604 245 60 27 chr5 44606212 44606433 -158479099 - MIR SINE MIR -5 257 31 228 304 0 38 chr5 44608154 44608233 -158477299 + MIR SINE MIR 33 108 -154 378 304 29 0 chr5 44608819 44608957 -158476575 - MLT1K LTR MaLR -156 432 291 21 71 0 0 chr5 44609551 44609593 -158475939 + AT_rich Low_complexity Low_complexity 1 42 0 1106 147 0 6 chr5 44610400 44610570 -158474962 + AluSg SINE Alu 1 169 -141 1498 107 0 0 chr5 44610588 44610793 -158474739 + AluSg/x SINE Alu 102 306 -4 748 167 126 75 chr5 44611095 44611206 -158474326 + MER63 DNA MER1_type 1 105 -956 1633 177 0 40 chr5 44611206 44611506 -158474026 + AluJo SINE Alu 1 288 -24 748 167 126 75 chr5 44611506 44611633 -158473899 + MER63 DNA MER1_type 105 251 -810 222 254 0 0 chr5 44612141 44612200 -158473332 + (CCA)n Simple_repeat Simple_repeat 3 61 0 537 253 148 48 chr5 44612203 44612432 -158473100 - MIR SINE MIR -4 258 7 1331 288 75 57 chr5 44613569 44613702 -158471830 - L2 LINE L2 -3 3310 3181 2019 149 0 0 chr5 44613702 44613997 -158471535 + AluJo SINE Alu 1 295 -17 1331 288 75 57 chr5 44613997 44614678 -158470854 - L2 LINE L2 -132 3181 2409 2113 173 60 58 chr5 44614726 44615224 -158470308 - LTR54 LTR ERV1 -11 499 1 1597 229 234 3 chr5 44615253 44615908 -158469624 - L2 LINE L2 -942 2372 1567 333 0 0 0 chr5 44616870 44616907 -158468625 + (A)n Simple_repeat Simple_repeat 1 37 0 592 192 0 25 chr5 44616966 44617086 -158468446 + AluJb SINE Alu 5 121 -191 505 52 26 0 chr5 44617086 44617163 -158468369 + (TA)n Simple_repeat Simple_repeat 2 80 0 2287 39 89 0 chr5 44617316 44617597 -158467935 + AluY SINE Alu 2 307 -4 390 21 0 0 chr5 44617796 44617843 -158467689 + (CA)n Simple_repeat Simple_repeat 2 48 0 1062 163 6 6 chr5 44617851 44618029 -158467503 + AluJb SINE Alu 126 303 -9 24 53 0 0 chr5 44618565 44618603 -158466929 + AT_rich Low_complexity Low_complexity 1 38 0 2259 115 3 6 chr5 44619205 44619518 -158466014 + AluSx SINE Alu 1 312 0 213 245 20 0 chr5 44619701 44619750 -158465782 - L2 LINE L2 -500 2814 2765 1441 208 144 49 chr5 44620248 44620585 -158464947 - L1MC5 LINE L1 -49 7912 7609 2309 103 3 0 chr5 44620585 44620895 -158464637 - AluSq SINE Alu -2 311 1 1441 208 144 49 chr5 44620895 44621216 -158464316 - L1MC5 LINE L1 -352 7609 7191 24 53 0 0 chr5 44621538 44621576 -158463956 + AT_rich Low_complexity Low_complexity 1 38 0 539 371 91 48 chr5 44621828 44623494 -158462038 - L2 LINE L2 -587 2727 990 1215 146 0 6 chr5 44623537 44623715 -158461817 - AluSx SINE Alu -12 300 124 478 143 13 0 chr5 44623715 44623792 -158461740 + MADE1 DNA Mariner 3 80 0 402 149 0 0 chr5 44623792 44623859 -158461673 - AluSx SINE Alu -175 127 61 340 278 88 46 chr5 44624529 44625260 -158460272 - L1ME LINE L1 -656 5514 4754 22 0 0 0 chr5 44625732 44625754 -158459778 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr5 44626276 44626298 -158459234 + AT_rich Low_complexity Low_complexity 1 22 0 201 238 0 29 chr5 44627304 44627409 -158458123 + A-rich Low_complexity Low_complexity 3 104 0 29 0 0 0 chr5 44627591 44627620 -158457912 + AT_rich Low_complexity Low_complexity 1 29 0 451 276 55 7 chr5 44628312 44628457 -158457075 + MIR SINE MIR 37 188 -74 2257 100 0 0 chr5 44628646 44628945 -158456587 + AluY SINE Alu 1 299 -12 21 0 0 0 chr5 44629177 44629198 -158456334 + AT_rich Low_complexity Low_complexity 1 21 0 319 222 20 30 chr5 44629221 44629320 -158456212 + HsTC2 DNA Tc2 1795 1892 -6 329 322 0 26 chr5 44631450 44631602 -158453930 + CT-rich Low_complexity Low_complexity 1 148 0 512 59 0 0 chr5 44633714 44633782 -158451750 - Alu SINE Alu -7 303 236 29 47 0 0 chr5 44633997 44634040 -158451492 + AT_rich Low_complexity Low_complexity 1 43 0 2265 109 3 3 chr5 44634100 44634411 -158451121 - AluSp SINE Alu -2 311 1 1994 151 3 7 chr5 44634468 44634773 -158450759 - AluJo SINE Alu -6 306 3 245 309 0 0 chr5 44635429 44635523 -158450009 + (CA)n Simple_repeat Simple_repeat 1 94 0 438 53 0 0 chr5 44636222 44636279 -158449253 + (TG)n Simple_repeat Simple_repeat 1 57 0 246 333 26 0 chr5 44637007 44637085 -158448447 + MIR SINE MIR 31 110 -152 198 0 0 0 chr5 44639989 44640011 -158445521 + (T)n Simple_repeat Simple_repeat 1 22 0 27 29 0 0 chr5 44640197 44640231 -158445301 + AT_rich Low_complexity Low_complexity 1 34 0 27 29 0 0 chr5 44640476 44640510 -158445022 + AT_rich Low_complexity Low_complexity 1 34 0 480 244 15 134 chr5 44640564 44640765 -158444767 + MER5B DNA MER1_type 2 178 0 230 234 0 0 chr5 44640893 44640940 -158444592 + CT-rich Low_complexity Low_complexity 2 48 0 249 33 0 0 chr5 44640940 44640970 -158444562 + (CA)n Simple_repeat Simple_repeat 1 30 0 29 28 0 0 chr5 44641835 44641871 -158443661 + AT_rich Low_complexity Low_complexity 1 36 0 348 348 33 17 chr5 44642565 44642746 -158442786 + MER5A DNA MER1_type 6 189 0 1819 164 0 19 chr5 44642988 44643299 -158442233 + AluJo SINE Alu 1 305 -7 256 213 49 0 chr5 44644380 44644441 -158441091 - MER5A DNA MER1_type -108 81 18 652 282 125 35 chr5 44644979 44645298 -158440234 - LTR16C LTR ERVL -69 422 75 190 378 18 18 chr5 44645554 44645665 -158439867 + L2 LINE L2 2599 2709 -605 2084 135 3 0 chr5 44645796 44646093 -158439439 + AluSx SINE Alu 1 298 -14 26 30 0 0 chr5 44650885 44650918 -158434614 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr5 44652436 44652460 -158433072 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr5 44652893 44652916 -158432616 + AT_rich Low_complexity Low_complexity 1 23 0 250 264 120 35 chr5 44654904 44655018 -158430514 + MIR SINE MIR 57 185 -23 24 0 0 0 chr5 44655833 44655857 -158429675 + AT_rich Low_complexity Low_complexity 1 24 0 244 271 0 0 chr5 44655919 44655967 -158429565 + L2 LINE L2 1370 1417 -1897 1486 192 42 3 chr5 44655968 44656255 -158429277 + AluJb SINE Alu 1 298 -14 242 293 84 37 chr5 44656613 44656804 -158428728 + L2 LINE L2 1565 1764 -1550 1061 285 79 36 chr5 44656834 44657279 -158428253 + LTR16B LTR ERVL 1 464 0 277 370 29 7 chr5 44657282 44657420 -158428112 + MER5B DNA MER1_type 34 174 -4 225 294 73 51 chr5 44657511 44657688 -158427844 + L2 LINE L2 2303 2483 -831 21 0 0 0 chr5 44657787 44657808 -158427724 + AT_rich Low_complexity Low_complexity 1 21 0 377 298 61 0 chr5 44657879 44658010 -158427522 - L2 LINE L2 -1336 1978 1840 383 322 112 19 chr5 44658031 44658289 -158427243 - LTR16A LTR ERVL -21 429 148 2324 86 0 0 chr5 44658847 44659139 -158426393 + AluY SINE Alu 1 292 -19 1792 141 11 4 chr5 44659191 44659468 -158426064 - AluJb SINE Alu -23 289 11 599 276 149 69 chr5 44659501 44659767 -158425765 - Charlie8 DNA MER1_type -1916 501 258 1027 272 78 36 chr5 44659767 44660264 -158425268 + LTR33 LTR ERVL 1 518 -3 599 276 149 69 chr5 44660264 44660461 -158425071 - Charlie8 DNA MER1_type -2159 258 1 1135 178 85 27 chr5 44661417 44661430 -158424102 - LTR16A1 LTR ERVL 0 457 446 1213 181 30 124 chr5 44661430 44661833 -158423699 - MLT1A1 LTR MaLR 0 365 1 1135 178 85 27 chr5 44661833 44662077 -158423455 - LTR16A1 LTR ERVL -11 446 185 2313 88 0 16 chr5 44662088 44662394 -158423138 + AluSg SINE Alu 1 301 -9 206 230 0 61 chr5 44662696 44662844 -158422688 + (TTTAA)n Simple_repeat Simple_repeat 3 141 0 3839 130 12 20 chr5 44663020 44663043 -158422489 + L1MA4A LINE L1 5664 5686 -617 1581 152 56 26 chr5 44663043 44663346 -158422186 + AluJo SINE Alu 1 312 0 3839 130 12 20 chr5 44663346 44663961 -158421571 + L1MA4A LINE L1 5686 6297 -6 588 266 47 34 chr5 44664010 44664243 -158421289 - MARNA DNA Mariner -168 418 183 24 0 0 0 chr5 44664279 44664303 -158421229 + AT_rich Low_complexity Low_complexity 1 24 0 2274 112 0 3 chr5 44664593 44664905 -158420627 - AluSx SINE Alu -1 311 1 331 276 14 28 chr5 44664996 44665141 -158420391 - L1M4 LINE L1 -417 5767 5625 333 237 26 9 chr5 44665197 44665311 -158420221 - L1M4 LINE L1 -1035 5111 4996 937 212 47 0 chr5 44665412 44665605 -158419927 - AluJo SINE Alu -110 202 1 275 134 16 45 chr5 44665637 44665703 -158419829 + Alu SINE Alu 246 289 -13 333 273 64 67 chr5 44665760 44666639 -158418893 - L1MEd LINE L1 -5154 965 40 2445 70 3 0 chr5 44666742 44667043 -158418489 - AluY SINE Alu -9 302 1 3206 179 13 4 chr5 44668052 44668609 -158416923 + MER68 LTR ERV1 1 562 0 628 302 90 14 chr5 44668612 44668824 -158416708 + MLT2E LTR ERVL 36 263 -365 1986 142 67 20 chr5 44668833 44669179 -158416353 - THE1C LTR MaLR 0 375 14 13985 170 26 22 chr5 44669678 44673503 -158412029 - L1MA4A LINE L1 -6 6999 3154 680 207 0 8 chr5 44673503 44673624 -158411908 - FLAM_C SINE Alu -13 120 1 13985 170 26 22 chr5 44673624 44673894 -158411638 - L1MA4A LINE L1 -3851 3154 2887 7523 207 122 5 chr5 44673890 44675475 -158410057 - L1MA4A LINE L1 -5078 1771 2 * 583 323 84 37 chr5 44675482 44675885 -158409647 - L1MEd LINE L1 -4701 1430 1009 1188 233 28 6 chr5 44675951 44676269 -158409263 - L1ME1 LINE L1 -3 6232 5908 2291 94 0 19 chr5 44676270 44676577 -158408955 + AluSg SINE Alu 1 301 -9 1341 97 0 0 chr5 44676577 44676752 -158408780 + AluSp SINE Alu 134 308 -5 2258 244 45 13 chr5 44676752 44677784 -158407748 - L1ME1 LINE L1 -314 5921 4849 2108 136 33 14 chr5 44677784 44678152 -158407380 + THE1C LTR MaLR 1 375 0 2258 244 45 13 chr5 44678152 44678322 -158407210 - L1ME1 LINE L1 -1386 4849 4686 608 265 17 9 chr5 44678325 44678555 -158406977 - L1ME1 LINE L1 -2704 3511 3280 265 302 79 101 chr5 44678534 44678987 -158406545 - L1ME1 LINE L1 -5089 1307 845 * 2307 107 0 0 chr5 44678987 44679286 -158406246 - AluSg SINE Alu -11 299 1 265 302 79 101 chr5 44679286 44680124 -158405408 - L1ME1 LINE L1 -5551 845 45 586 274 79 27 chr5 44680160 44680452 -158405080 - L1MEd LINE L1 -5291 828 522 228 200 0 0 chr5 44680647 44680697 -158404835 + A-rich Low_complexity Low_complexity 1 50 0 2144 228 116 60 chr5 44680699 44681347 -158404185 + Charlie7 DNA MER1_type 109 719 -1893 1341 225 39 3 chr5 44681347 44681514 -158404018 - AluJo SINE Alu -13 299 116 213 39 0 0 chr5 44681514 44681540 -158403992 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1341 225 39 3 chr5 44681540 44681657 -158403875 - AluJo SINE Alu -196 116 5 2144 228 116 60 chr5 44681657 44682969 -158402563 + Charlie7 DNA MER1_type 719 2341 -271 283 287 0 21 chr5 44683274 44683368 -158402164 - L1ME4a LINE L1 -67 6054 5963 189 347 40 32 chr5 44684611 44684735 -158400797 + L3b LINE CR1 1287 1411 -172 229 268 148 55 chr5 44685166 44685550 -158399982 - L1ME4a LINE L1 -8 6113 5694 335 336 38 30 chr5 44685617 44685748 -158399784 - L2 LINE L2 0 3313 3182 612 0 0 0 chr5 44685836 44685904 -158399628 + (TG)n Simple_repeat Simple_repeat 2 69 0 36 62 0 0 chr5 44686685 44686749 -158398783 + GC_rich Low_complexity Low_complexity 1 64 0 357 208 76 145 chr5 44686921 44687224 -158398308 - L1M2 LINE L1 -5894 955 674 523 322 58 33 chr5 44689479 44689721 -158395811 + MIR SINE MIR 9 256 -6 29 70 0 0 chr5 44690528 44690585 -158394947 + AT_rich Low_complexity Low_complexity 1 57 0 2756 10 0 13 chr5 44690696 44691005 -158394527 - AluYb8 SINE Alu -13 305 1 202 323 31 55 chr5 44691370 44691497 -158394035 - L2 LINE L2 -630 2684 2561 189 248 147 115 chr5 44692116 44692273 -158393259 - MIR SINE MIR -32 230 69 209 351 59 86 chr5 44692920 44693259 -158392273 + L2 LINE L2 2891 3220 -52 203 277 239 23 chr5 44693346 44693476 -158392056 - L2 LINE L2 -834 2480 2323 2091 169 96 0 chr5 44693718 44694102 -158391430 + MSTA LTR MaLR 8 428 0 9739 157 12 5 chr5 44694102 44695741 -158389791 + MSTA-int LTR MaLR 1 1651 0 2094 168 75 0 chr5 44695741 44696139 -158389393 + MSTA LTR MaLR 1 428 0 270 146 21 0 chr5 44696238 44696286 -158389246 + MIR SINE MIR 94 142 -120 21 0 0 0 chr5 44697201 44697222 -158388310 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr5 44697424 44697445 -158388087 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr5 44698657 44698678 -158386854 + AT_rich Low_complexity Low_complexity 1 21 0 372 312 107 51 chr5 44699698 44699932 -158385600 - L3 LINE CR1 -23 1554 1308 235 280 0 0 chr5 44700028 44700078 -158385454 - L2 LINE L2 -7 3306 3257 322 303 78 37 chr5 44700141 44700359 -158385173 - MIR SINE MIR -27 235 9 315 299 184 25 chr5 44701160 44701361 -158384171 + MIR SINE MIR 1 233 -29 991 194 37 40 chr5 44701656 44701929 -158383603 - L1ME3A LINE L1 -5 6165 5894 278 152 0 0 chr5 44701925 44701971 -158383561 + L1ME3 LINE L1 5920 5965 -197 * 185 369 0 0 chr5 44704109 44704174 -158381358 - L2 LINE L2 0 3272 3208 942 274 133 39 chr5 44704241 44704518 -158381014 + L2 LINE L2 2809 3059 -254 1782 160 3 28 chr5 44704518 44704837 -158380695 - AluJb SINE Alu 0 312 2 942 274 133 39 chr5 44704837 44705019 -158380513 + L2 LINE L2 3059 3311 -2 469 355 150 15 chr5 44705020 44705426 -158380106 + L2 LINE L2 2228 2688 -626 434 280 93 33 chr5 44705559 44705773 -158379759 - L2 LINE L2 -7 3306 3080 335 288 208 15 chr5 44705836 44706100 -158379432 - L2 LINE L2 -339 2975 2661 24 0 0 0 chr5 44706755 44706779 -158378753 + AT_rich Low_complexity Low_complexity 1 24 0 1433 88 0 5 chr5 44707092 44707284 -158378248 - AluSg/x SINE Alu -13 299 109 2539 30 7 3 chr5 44707284 44707580 -158377952 - AluY SINE Alu -14 297 1 221 180 200 0 chr5 44707616 44707666 -158377866 - L2 LINE L2 -3 3310 3251 249 248 144 32 chr5 44707756 44707881 -158377651 - MER117 DNA MER1_type -53 144 6 1405 230 42 3 chr5 44708744 44708826 -158376706 - Tigger5 DNA MER2_type -2019 304 227 1598 161 18 26 chr5 44708826 44709099 -158376433 - AluJo SINE Alu -41 271 1 1405 230 42 3 chr5 44709099 44709303 -158376229 - Tigger5 DNA MER2_type -2096 227 7 2101 97 7 20 chr5 44709425 44709724 -158375808 - AluSx SINE Alu -17 295 1 250 360 24 0 chr5 44709774 44709899 -158375633 + MIR SINE MIR 104 231 -31 360 283 17 23 chr5 44709945 44710118 -158375414 - L1ME3A LINE L1 -396 5774 5603 225 154 0 0 chr5 44710122 44710161 -158375371 + (TG)n Simple_repeat Simple_repeat 1 39 0 730 205 36 98 chr5 44710281 44710555 -158374977 - L1MC5 LINE L1 -44 7917 7666 2055 133 7 3 chr5 44710555 44710864 -158374668 + AluSx SINE Alu 1 310 -2 730 205 36 98 chr5 44710864 44710925 -158374607 - L1MC5 LINE L1 -295 7666 7603 215 106 43 0 chr5 44710974 44711021 -158374511 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 553 246 71 54 chr5 44711134 44711484 -158374048 - L1MEd LINE L1 -4862 1257 902 769 271 41 23 chr5 44711602 44711820 -158373712 + MER58A DNA MER1_type 1 222 -2 322 290 141 75 chr5 44712038 44712372 -158373160 - L1MEd LINE L1 -5504 615 260 2353 190 55 11 chr5 44712441 44712944 -158372588 - MER68 LTR ERV1 -2 603 1 373 272 48 0 chr5 44712983 44713086 -158372446 - MER5A DNA MER1_type -78 111 4 331 225 95 122 chr5 44713377 44713599 -158371933 + MER46C DNA MER2_type 1 216 -122 2240 109 15 18 chr5 44713674 44714012 -158371520 + MER1B DNA MER1_type 1 337 0 1502 178 6 55 chr5 44714797 44715123 -158370409 - AluJo SINE Alu -2 310 1 324 0 0 0 chr5 44715126 44715162 -158370370 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 366 200 154 9 chr5 44716911 44717021 -158368511 - L1ME3A LINE L1 0 6170 6045 4006 130 61 38 chr5 44717048 44717163 -158368369 - L1MA6 LINE L1 0 6300 6189 1914 137 158 21 chr5 44717163 44717536 -158367996 - MSTC LTR MaLR -4 424 1 4006 130 61 38 chr5 44717536 44718227 -158367305 - L1MA6 LINE L1 -111 6189 5476 429 152 0 0 chr5 44718228 44718294 -158367238 - AluJ/FRAM SINE Alu -26 286 221 247 111 89 0 chr5 44718295 44718340 -158367192 - L1MA6 LINE L1 -808 5489 5441 305 240 0 83 chr5 44718409 44718505 -158367027 - L2 LINE L2 -1 3312 3225 546 233 83 47 chr5 44718643 44718836 -158366696 + MIR SINE MIR 19 218 -44 247 237 17 17 chr5 44719029 44719088 -158366444 - MER5A DNA MER1_type -7 182 124 192 277 0 31 chr5 44719045 44719110 -158366422 + MER5A DNA MER1_type 35 97 -92 * 861 145 0 7 chr5 44719223 44719361 -158366171 - FRAM SINE Alu -7 169 33 218 360 68 14 chr5 44719479 44719626 -158365906 + L2 LINE L2 2368 2522 -792 377 281 33 25 chr5 44720067 44720188 -158365344 - L2 LINE L2 -5 3308 3187 29 28 0 0 chr5 44720472 44720508 -158365024 + AT_rich Low_complexity Low_complexity 1 36 0 34 96 0 0 chr5 44720594 44720698 -158364834 + AT_rich Low_complexity Low_complexity 1 104 0 20945 33 5 0 chr5 44720710 44724105 -158361427 - L1PA4 LINE L1 -3 6152 2815 34353 46 2 2 chr5 44724205 44728466 -158357066 - L1P LINE L1 -1882 4264 1 943 175 35 5 chr5 44728948 44729148 -158356384 - L1PA16 LINE L1 -3 6163 5958 2111 113 0 30 chr5 44729234 44729535 -158355997 + AluSg SINE Alu 1 292 -18 288 314 48 0 chr5 44729676 44729781 -158355751 + MER94 DNA DNA 16 125 -9 1236 218 23 0 chr5 44730056 44730322 -158355210 - L1MCa LINE L1 -6135 291 20 464 318 150 13 chr5 44730496 44730729 -158354803 + L3 LINE CR1 1230 1494 -83 322 272 98 11 chr5 44732063 44732155 -158353377 - L2 LINE L2 -15 3298 3199 359 335 95 20 chr5 44732941 44733141 -158352391 - MIR SINE MIR 0 262 48 821 221 88 32 chr5 44733558 44733878 -158351654 - L1ME2 LINE L1 -9 6165 5811 897 163 0 0 chr5 44733897 44734044 -158351488 - FRAM SINE Alu -30 146 1 1795 221 101 21 chr5 44734047 44734313 -158351219 - L1ME2 LINE L1 -343 5821 5578 2837 10 0 0 chr5 44734313 44734622 -158350910 + AluYa5 SINE Alu 1 309 -2 1795 221 101 21 chr5 44734622 44734968 -158350564 - L1ME2 LINE L1 -586 5578 5163 21 0 0 0 chr5 44735293 44735314 -158350218 + AT_rich Low_complexity Low_complexity 1 21 0 2277 91 3 3 chr5 44735772 44736069 -158349463 - AluSp SINE Alu -16 297 1 924 168 0 46 chr5 44736410 44736606 -158348926 - AluJb SINE Alu 0 312 129 1542 202 22 28 chr5 44736923 44737284 -158348248 + MLT1A1 LTR MaLR 1 359 -6 280 230 27 14 chr5 44737315 44737389 -158348143 + MER58B DNA MER1_type 230 304 -37 465 238 39 61 chr5 44737734 44737915 -158347617 + L2 LINE L2 3133 3309 -4 2282 138 12 3 chr5 44738508 44738842 -158346690 + MER1B DNA MER1_type 1 337 -2 289 179 18 18 chr5 44739286 44739342 -158346190 + MER58 DNA MER1_type 1 56 -159 264 272 62 36 chr5 44739361 44739556 -158345976 - L1MCa LINE L1 -4822 1604 1405 433 268 30 83 chr5 44739580 44739916 -158345616 - L1MCa LINE L1 -4783 1645 1328 258 276 14 2 chr5 44740408 44740508 -158345024 - L1MCa LINE L1 -5045 1383 1242 1952 161 31 6 chr5 44740511 44740860 -158344672 - MER47A DNA MER2_type -7 359 2 1533 160 45 120 chr5 44740979 44741405 -158344127 - MSTD LTR MaLR -2 394 1 13561 132 50 20 chr5 44742074 44744400 -158341132 - Tigger1 DNA MER2_type 0 2418 24 437 236 19 19 chr5 44744803 44744909 -158340623 + MER5A DNA MER1_type 4 109 -80 1146 184 61 19 chr5 44745725 44746035 -158339497 - MER33 DNA MER1_type -1 323 1 399 304 23 18 chr5 44746320 44746491 -158339041 + CT-rich Low_complexity Low_complexity 1 172 0 183 273 0 23 chr5 44746932 44746976 -158338556 + L2 LINE L2 3209 3251 -21 1134 200 5 14 chr5 44747124 44747344 -158338188 - MER20 DNA MER1_type 0 219 2 1811 157 61 0 chr5 44748594 44748888 -158336644 - MER7A DNA MER2_type -36 310 1 252 250 0 0 chr5 44748929 44748985 -158336547 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 284 363 78 16 chr5 44749623 44749879 -158335653 - MLT1K LTR MaLR -36 552 281 1781 112 18 185 chr5 44750326 44750774 -158334758 - THE1C LTR MaLR 0 375 3 10549 101 14 31 chr5 44750776 44752384 -158333148 - THE1C-int LTR MaLR 0 1580 1 1586 134 64 55 chr5 44752384 44752803 -158332729 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr5 44753989 44754012 -158331520 + AT_rich Low_complexity Low_complexity 1 23 0 428 250 9 35 chr5 44754294 44754410 -158331122 + MIR SINE MIR 28 140 -122 22 0 0 0 chr5 44754865 44754887 -158330645 + AT_rich Low_complexity Low_complexity 1 22 0 200 240 8 47 chr5 44754910 44755039 -158330493 + (TATAA)n Simple_repeat Simple_repeat 5 128 0 1901 163 62 19 chr5 44755264 44755638 -158329894 + MLT1B LTR MaLR 1 390 0 528 93 0 0 chr5 44755997 44756072 -158329460 + (TCCCC)n Simple_repeat Simple_repeat 5 79 0 706 285 100 56 chr5 44757041 44757666 -158327866 + L1MEc LINE L1 802 1398 -4817 2336 81 3 0 chr5 44757666 44757961 -158327571 + AluSp SINE Alu 1 296 -17 2200 89 0 23 chr5 44757971 44758273 -158327259 + AluSx SINE Alu 1 295 -17 706 285 100 56 chr5 44758273 44758626 -158326906 + L1MEc LINE L1 1406 1663 -4552 1984 242 142 44 chr5 44760268 44760319 -158325213 - L1ME3 LINE L1 -30 6412 6367 180 0 0 0 chr5 44760319 44760339 -158325193 + (TA)n Simple_repeat Simple_repeat 1 20 0 1984 242 142 44 chr5 44760339 44762234 -158323298 - L1ME3 LINE L1 -75 6367 4277 612 289 47 30 chr5 44762243 44762648 -158322884 - L1ME3 LINE L1 -2324 4102 3691 * 768 255 63 12 chr5 44762617 44762950 -158322582 - L1ME3 LINE L1 -3653 2773 2424 269 237 139 35 chr5 44763056 44763229 -158322303 - L1ME3 LINE L1 -4176 2431 2241 388 309 96 45 chr5 44763411 44763686 -158321846 - L1ME3 LINE L1 -5082 1525 1217 2071 105 6 19 chr5 44763686 44764001 -158321531 - AluSx SINE Alu -1 311 1 388 309 96 45 chr5 44764001 44764171 -158321361 - L1ME3 LINE L1 -5390 1217 1057 435 173 0 0 chr5 44764248 44764329 -158321203 + AluS SINE Alu 1 81 -232 2180 104 0 13 chr5 44765326 44765642 -158319890 - AluSx SINE Alu 0 312 1 236 208 19 0 chr5 44765705 44765758 -158319774 - L1ME3 LINE L1 -5473 953 900 1301 137 0 5 chr5 44765888 44766078 -158319454 + AluSx SINE Alu 1 189 -123 234 333 33 17 chr5 44766421 44766541 -158318991 - L1ME3 LINE L1 -5981 626 505 28 48 0 0 chr5 44767663 44767705 -158317827 + AT_rich Low_complexity Low_complexity 1 42 0 1535 216 106 30 chr5 44768653 44768791 -158316741 - Charlie1b DNA MER1_type -2292 469 343 189 0 0 0 chr5 44768791 44768812 -158316720 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2531 90 22 20 chr5 44768812 44769214 -158316318 - L1PB2 LINE L1 -9 6142 5740 1535 216 106 30 chr5 44769214 44769509 -158316023 - Charlie1b DNA MER1_type -2417 344 2 297 0 0 0 chr5 44769921 44769954 -158315578 + (T)n Simple_repeat Simple_repeat 1 33 0 1568 139 51 83 chr5 44769978 44770177 -158315355 - MER46B DNA MER2_type -2495 236 178 2267 64 0 27 chr5 44770177 44770473 -158315059 - AluY SINE Alu -23 288 1 1568 139 51 83 chr5 44770473 44770646 -158314886 - MER46B DNA MER2_type -2553 178 1 28 0 0 0 chr5 44770649 44770677 -158314855 + AT_rich Low_complexity Low_complexity 1 28 0 197 241 74 0 chr5 44771138 44771192 -158314340 - MIR SINE MIR -110 98 41 477 248 64 28 chr5 44771769 44771910 -158313622 - MIR3 SINE MIR -13 195 50 484 57 0 101 chr5 44773486 44773805 -158311727 + (TA)n Simple_repeat Simple_repeat 1 286 0 226 189 54 27 chr5 44773807 44773881 -158311651 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 8115 80 19 3 chr5 44773881 44775765 -158309767 - L1PA7 LINE L1 -3 6151 4232 13408 101 18 2 chr5 44775765 44777733 -158307799 + L1PA7 LINE L1 2234 4233 -1913 1590 159 107 20 chr5 44777974 44778319 -158307213 - THE1C LTR MaLR 0 375 1 2386 77 0 3 chr5 44778378 44778675 -158306857 + AluSx SINE Alu 1 296 -16 1212 145 30 0 chr5 44779025 44779225 -158306307 - MER2 DNA MER2_type -139 206 1 1859 76 50 29 chr5 44779264 44779541 -158305991 + AluSc SINE Alu 1 283 -26 2280 83 3 16 chr5 44780380 44780693 -158304839 - AluSc SINE Alu 0 309 1 302 294 126 14 chr5 44780854 44780997 -158304535 + L1M4 LINE L1 4088 4246 -1900 670 236 123 14 chr5 44781195 44781407 -158304125 + L1ME2 LINE L1 5930 6164 0 343 192 10 10 chr5 44781515 44781614 -158303918 + (TA)n Simple_repeat Simple_repeat 1 99 0 237 304 80 0 chr5 44782033 44782145 -158303387 + L1P LINE L1 5245 5365 -781 21 0 0 0 chr5 44782534 44782555 -158302977 + AT_rich Low_complexity Low_complexity 1 21 0 1777 181 0 3 chr5 44783508 44783812 -158301720 - AluJb SINE Alu -9 303 1 394 285 94 40 chr5 44784050 44784401 -158301131 + L1MEc LINE L1 782 1151 -5245 861 221 77 31 chr5 44784609 44784831 -158300701 + MLT1F LTR MaLR 257 488 -54 261 255 69 0 chr5 44784849 44784951 -158300581 + L1MEc LINE L1 1712 1820 -4576 703 206 0 30 chr5 44785080 44785211 -158300321 + FRAM SINE Alu 20 146 -30 240 247 11 22 chr5 44785217 44785306 -158300226 + L1M4 LINE L1 4263 4350 -1796 496 199 122 39 chr5 44785342 44785498 -158300034 + L1ME3A LINE L1 5931 6099 -71 1937 88 51 11 chr5 44786509 44786782 -158298750 + AluSx SINE Alu 22 305 -7 1109 244 153 11 chr5 44786986 44787500 -158298032 - MLT1E2 LTR MaLR 0 624 14 384 288 91 59 chr5 44788245 44788521 -158297011 - L1MEc LINE L1 -5082 1525 1234 2197 101 0 19 chr5 44788521 44788839 -158296693 - AluSx SINE Alu 0 312 1 384 288 91 59 chr5 44788839 44788902 -158296630 - L1MEc LINE L1 -5373 1234 1175 236 208 19 0 chr5 44788902 44788955 -158296577 - L1MEc LINE L1 -5473 953 900 1266 136 0 11 chr5 44789085 44789276 -158296256 + AluSx SINE Alu 1 189 -123 234 333 33 17 chr5 44789620 44789740 -158295792 - L1MEc LINE L1 -5981 626 505 28 48 0 0 chr5 44790862 44790904 -158294628 + AT_rich Low_complexity Low_complexity 1 42 0 1504 216 106 30 chr5 44791852 44791990 -158293542 - Charlie1b DNA MER1_type -2292 469 343 189 0 0 0 chr5 44791990 44792011 -158293521 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2557 87 22 20 chr5 44792011 44792413 -158293119 - L1PB2 LINE L1 -9 6142 5740 1504 216 106 30 chr5 44792413 44792708 -158292824 - Charlie1b DNA MER1_type -2417 344 2 414 0 0 0 chr5 44793127 44793173 -158292359 + (T)n Simple_repeat Simple_repeat 1 46 0 1546 139 51 83 chr5 44793197 44793396 -158292136 - MER46B DNA MER2_type -2495 236 178 2278 68 0 27 chr5 44793396 44793692 -158291840 - AluY SINE Alu -23 288 1 1546 139 51 83 chr5 44793692 44793865 -158291667 - MER46B DNA MER2_type -2553 178 1 28 0 0 0 chr5 44793868 44793896 -158291636 + AT_rich Low_complexity Low_complexity 1 28 0 202 241 74 0 chr5 44794357 44794411 -158291121 - MIR SINE MIR -110 98 41 468 234 64 28 chr5 44794988 44795129 -158290403 - MIR3 SINE MIR -13 195 50 441 59 0 103 chr5 44796701 44797044 -158288488 + (TA)n Simple_repeat Simple_repeat 1 307 0 206 147 7 84 chr5 44797056 44797199 -158288333 + (TA)n Simple_repeat Simple_repeat 1 132 0 8146 78 19 3 chr5 44797199 44799083 -158286449 - L1PA7 LINE L1 -3 6151 4232 16051 46 17 3 chr5 44799083 44801243 -158284289 + L1P LINE L1 2234 4423 -1723 357 59 0 0 chr5 44801343 44801394 -158284138 + L1M4 LINE L1 5134 5184 -962 599 199 23 0 chr5 44801403 44801534 -158283998 + L1MA10 LINE L1 6191 6324 -10 1028 150 12 0 chr5 44801573 44801740 -158283792 - AluJ SINE Alu -16 296 128 1367 202 35 39 chr5 44801776 44802218 -158283314 + L1MA9 LINE L1 5189 5631 -681 1865 116 60 28 chr5 44802218 44802502 -158283030 + AluSx SINE Alu 1 293 -19 1367 202 35 39 chr5 44802502 44802608 -158282924 + L1MA9 LINE L1 5631 6156 -156 830 128 0 8 chr5 44802772 44802897 -158282635 - AluJ SINE Alu -188 124 1 233 331 105 0 chr5 44803060 44803184 -158282348 - L2 LINE L2 -2823 491 355 1677 164 35 3 chr5 44803525 44803811 -158281721 - AluJo SINE Alu -17 295 1 27 0 0 0 chr5 44804108 44804135 -158281397 + AT_rich Low_complexity Low_complexity 1 27 0 487 311 164 39 chr5 44804297 44805167 -158280365 + L2 LINE L2 515 1493 -1821 685 188 43 0 chr5 44805215 44805353 -158280179 + MLT1D LTR MaLR 10 153 -352 13521 75 11 18 chr5 44805460 44807363 -158278169 + L1P LINE L1 826 2714 -3432 3025 234 33 30 chr5 44808575 44809705 -158275827 - L1 LINE L1 -2628 3518 2386 1527 220 57 34 chr5 44809951 44810410 -158275122 + L1MC4a LINE L1 7320 8026 -16 268 172 35 0 chr5 44810441 44810499 -158275033 + L1MD3 LINE L1 7925 7984 -11 7899 47 17 2 chr5 44811034 44812083 -158273449 - L1P LINE L1 -1241 4905 3841 7316 195 35 33 chr5 44812202 44814093 -158271439 + L1 LINE L1 2981 4876 -1270 14752 66 3 6 chr5 44819394 44821403 -158264129 + L1P LINE L1 819 2822 -3324 21 36 0 0 chr5 44823752 44823780 -158261752 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr5 44824150 44824172 -158261360 + AT_rich Low_complexity Low_complexity 1 22 0 249 284 0 0 chr5 44830028 44830102 -158255430 + T-rich Low_complexity Low_complexity 2 75 0 32 67 0 0 chr5 44833195 44833255 -158252277 + AT_rich Low_complexity Low_complexity 1 60 0 23 33 0 0 chr5 44833379 44833409 -158252123 + AT_rich Low_complexity Low_complexity 1 30 0 780 228 41 0 chr5 44836324 44836495 -158249037 - MER5B DNA MER1_type 0 178 1 225 0 0 0 chr5 44837604 44837629 -158247903 + (CA)n Simple_repeat Simple_repeat 2 26 0 2461 81 0 0 chr5 44839207 44839514 -158246018 + AluY SINE Alu 1 307 -4 472 142 236 68 chr5 44839523 44839671 -158245861 + MER20 DNA MER1_type 46 218 -1 276 242 40 166 chr5 44841871 44842148 -158243384 + Charlie2 DNA MER1_type 1 242 -2620 2031 197 103 65 chr5 44842238 44842864 -158242668 + Charlie2 DNA MER1_type 1909 2583 -279 563 154 0 0 chr5 44842864 44842955 -158242577 + L1MC1 LINE L1 6243 6333 0 2031 197 103 65 chr5 44842955 44843246 -158242286 + Charlie2 DNA MER1_type 2583 2861 -1 1389 207 108 13 chr5 44843449 44843763 -158241769 + MER2 DNA MER2_type 1 344 0 3498 95 24 51 chr5 44844170 44844802 -158240730 - SVA Other Other -339 1047 433 695 183 9 18 chr5 44845041 44845269 -158240263 + CT-rich Low_complexity Low_complexity 1 225 0 807 154 58 19 chr5 44845736 44845892 -158239640 - THE1C LTR MaLR -213 162 1 25 51 0 0 chr5 44847030 44847069 -158238463 + AT_rich Low_complexity Low_complexity 1 39 0 216 255 0 0 chr5 44847265 44847316 -158238216 + CT-rich Low_complexity Low_complexity 2 52 0 381 207 9 20 chr5 44847535 44847646 -158237886 - L1MA4A LINE L1 -201 6102 5976 22 0 0 0 chr5 44848060 44848082 -158237450 + AT_rich Low_complexity Low_complexity 1 22 0 244 250 0 0 chr5 44848586 44848642 -158236890 + MER5B DNA MER1_type 2 57 -121 581 315 73 76 chr5 44849170 44849707 -158235825 + L1MEd LINE L1 535 1069 -5050 26 30 0 0 chr5 44849910 44849943 -158235589 + AT_rich Low_complexity Low_complexity 1 33 0 738 239 0 5 chr5 44850215 44850416 -158235116 - L1P LINE L1 -989 5157 4958 3064 148 16 63 chr5 44850416 44851013 -158234519 + L1PB4 LINE L1 5567 6154 -2 334 295 0 18 chr5 44851360 44851526 -158234006 - L1MCa LINE L1 -5239 1187 1025 280 285 70 50 chr5 44851718 44852020 -158233512 - L1MEd LINE L1 -4908 1211 904 238 0 81 0 chr5 44852775 44852812 -158232720 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 441 210 10 0 chr5 44853024 44853124 -158232408 - L1MA8 LINE L1 -201 6090 5990 281 278 89 58 chr5 44854038 44854229 -158231303 + L2 LINE L2 3117 3313 0 31 76 0 0 chr5 44854734 44854800 -158230732 + AT_rich Low_complexity Low_complexity 1 66 0 221 231 0 31 chr5 44854866 44854931 -158230601 + (TA)n Simple_repeat Simple_repeat 1 63 0 545 321 110 51 chr5 44857875 44858527 -158227005 + L2 LINE L2 2157 2847 -467 1103 156 29 37 chr5 44858986 44859230 -158226302 + L1MB5 LINE L1 5929 6170 -4 1821 102 25 4 chr5 44860634 44860955 -158224577 + AluSg SINE Alu 1 327 0 1619 159 4 8 chr5 44861480 44861737 -158223795 + AluJo SINE Alu 45 300 -12 2285 90 0 17 chr5 44861760 44862060 -158223472 + AluY SINE Alu 1 295 -16 2283 103 0 7 chr5 44862074 44862375 -158223157 + AluSq SINE Alu 5 303 -10 607 130 0 0 chr5 44862391 44862483 -158223049 + AluSg/x SINE Alu 211 302 -8 936 153 23 34 chr5 44862561 44862737 -158222795 - AluJb SINE Alu -9 303 130 367 176 186 29 chr5 44864249 44864351 -158221181 + MER2 DNA MER2_type 225 342 -3 1785 78 22 19 chr5 44864748 44865018 -158220514 - SVA Other Other -339 1047 777 606 278 0 0 chr5 44865330 44865643 -158219889 + (TGAA)n Simple_repeat Simple_repeat 1 313 0 602 238 4 0 chr5 44865663 44865951 -158219581 + (TGAA)n Simple_repeat Simple_repeat 1 289 0 * 750 211 0 0 chr5 44865918 44866098 -158219434 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 2145 147 0 0 chr5 44866901 44867201 -158218331 - AluSx SINE Alu -12 300 1 466 179 12 0 chr5 44867202 44867286 -158218246 - MIR SINE MIR -115 147 63 210 118 0 0 chr5 44867292 44867326 -158218206 + (A)n Simple_repeat Simple_repeat 1 34 0 2027 148 0 3 chr5 44867337 44867640 -158217892 + AluJb SINE Alu 2 303 -9 2335 81 3 10 chr5 44867640 44867948 -158217584 + AluY SINE Alu 1 306 -5 1068 147 29 0 chr5 44867968 44868138 -158217394 + AluSg/x SINE Alu 135 309 -1 293 253 0 44 chr5 44868145 44868236 -158217296 - MER3 DNA MER1_type -122 87 1 1654 133 68 28 chr5 44868945 44869269 -158216263 + MER44D DNA MER2_type 1 607 -2 937 235 78 0 chr5 44870668 44870885 -158214647 + MIR SINE MIR 29 262 0 293 336 38 53 chr5 44872501 44872632 -158212900 - MER5B DNA MER1_type -49 129 1 213 280 172 21 chr5 44873054 44873147 -158212385 - L2 LINE L2 -2 3311 3205 1728 191 82 48 chr5 44873571 44874048 -158211484 - MLT1D LTR MaLR -7 498 6 574 335 101 38 chr5 44874075 44874600 -158210932 - L2 LINE L2 -528 2786 2229 716 178 115 73 chr5 44874600 44874887 -158210645 + MSTA LTR MaLR 1 299 -129 2192 119 0 0 chr5 44875535 44875829 -158209703 - AluSx SINE Alu -17 295 2 411 237 32 50 chr5 44875850 44876069 -158209463 - L1MC5 LINE L1 -436 7525 7311 195 215 139 25 chr5 44876556 44876635 -158208897 - L2 LINE L2 -165 3148 3061 1176 241 53 16 chr5 44876642 44876965 -158208567 - MLT1C LTR MaLR 0 467 133 194 250 0 0 chr5 44877627 44877667 -158207865 - MIR SINE MIR -129 79 40 515 281 6 121 chr5 44877741 44878072 -158207460 + L3 LINE CR1 1036 1328 -249 396 186 133 0 chr5 44878079 44878192 -158207340 + MLT1C LTR MaLR 6 133 -334 412 332 133 15 chr5 44878291 44878487 -158207045 + MIR SINE MIR 23 241 -21 354 301 113 5 chr5 44878553 44878756 -158206776 + L1ME LINE L1 5594 5818 -344 724 240 143 10 chr5 44879080 44879276 -158206256 - MIR SINE MIR -38 224 3 1470 102 0 0 chr5 44879454 44879640 -158205892 - AluSg1 SINE Alu -123 186 1 214 164 36 0 chr5 44879941 44879996 -158205536 + (TG)n Simple_repeat Simple_repeat 2 58 0 223 240 0 20 chr5 44880654 44880704 -158204828 + CT-rich Low_complexity Low_complexity 1 49 0 237 65 0 0 chr5 44880711 44880742 -158204790 + (CA)n Simple_repeat Simple_repeat 1 31 0 456 268 51 19 chr5 44880812 44880969 -158204563 + MER63A DNA MER1_type 49 210 0 515 343 91 8 chr5 44881169 44881411 -158204121 + MIR SINE MIR 1 262 0 1393 274 44 27 chr5 44881617 44882123 -158203409 + L2 LINE L2 2555 3064 -249 324 216 167 10 chr5 44882123 44882225 -158203307 + MLT1C LTR MaLR 7 124 -343 246 221 21 21 chr5 44882330 44882425 -158203107 + L1MC5 LINE L1 7840 7934 -27 375 78 0 0 chr5 44882451 44882502 -158203030 + (TTCA)n Simple_repeat Simple_repeat 2 52 0 693 174 0 0 chr5 44883410 44883519 -158202013 + AluJb SINE Alu 179 287 -25 318 239 22 43 chr5 44883520 44883612 -158201920 - L1MC4 LINE L1 -1339 6703 6614 2204 121 28 36 chr5 44883616 44883980 -158201552 + THE1B LTR MaLR 4 364 0 198 368 26 26 chr5 44883983 44884100 -158201432 - MIR SINE MIR -62 200 84 304 127 48 0 chr5 44886618 44886681 -158198851 + GA-rich Low_complexity Low_complexity 4 69 0 213 121 0 0 chr5 44888098 44888131 -158197401 + (CATATA)n Simple_repeat Simple_repeat 6 38 0 22 80 0 0 chr5 44888138 44888188 -158197344 + AT_rich Low_complexity Low_complexity 1 50 0 1494 156 18 127 chr5 44888201 44888586 -158196946 + MER7A DNA MER2_type 1 341 -5 1814 132 3 43 chr5 44888831 44889135 -158196397 - AluSx SINE Alu -20 292 1 180 0 0 0 chr5 44889774 44889794 -158195738 + (TA)n Simple_repeat Simple_repeat 2 21 0 1868 155 0 20 chr5 44889863 44890160 -158195372 + AluJb SINE Alu 1 291 -21 321 135 0 0 chr5 44890161 44890213 -158195319 + (TA)n Simple_repeat Simple_repeat 1 52 0 232 233 47 0 chr5 44890218 44890304 -158195228 - L1MC4 LINE L1 -1339 6703 6614 241 298 0 0 chr5 44890305 44890362 -158195170 + (TA)n Simple_repeat Simple_repeat 2 58 0 313 318 0 0 chr5 44890363 44890451 -158195081 + L1MC4 LINE L1 6615 6702 -1340 322 297 41 41 chr5 44891146 44891291 -158194241 + HAL1 LINE L1 2307 2451 -56 341 316 39 124 chr5 44891591 44891946 -158193586 + L2 LINE L2 2948 3272 0 468 232 83 18 chr5 44892073 44892241 -158193291 + MER104 DNA MER2_type 2 180 0 1239 106 252 0 chr5 44893229 44893485 -158192047 - AluSx SINE Alu 0 313 1 1706 215 65 70 chr5 44893810 44894367 -158191165 - MLT2B3 LTR ERVL 0 554 1 2054 98 0 0 chr5 44894490 44894755 -158190777 - AluSx SINE Alu -45 267 3 189 189 47 9 chr5 44895623 44895729 -158189803 + (TA)n Simple_repeat Simple_repeat 2 111 0 401 344 172 0 chr5 44895741 44895968 -158189564 + L3 LINE CR1 1304 1569 -8 1146 189 65 119 chr5 44896272 44896684 -158188848 + MLT1C LTR MaLR 1 467 0 195 42 0 0 chr5 44896761 44896785 -158188747 + (CA)n Simple_repeat Simple_repeat 1 24 0 494 297 21 81 chr5 44896886 44897219 -158188313 - L1MC4a LINE L1 -1962 5846 5534 1502 96 0 19 chr5 44897565 44897773 -158187759 - AluY SINE Alu -10 301 98 358 219 26 3 chr5 44898910 44898999 -158186533 + L1MC/D LINE L1 5680 5766 -400 192 406 83 0 chr5 44899476 44899609 -158185923 - MIR3 SINE MIR -2 206 63 2201 66 10 7 chr5 44900091 44900411 -158185121 - AluY SINE Alu 0 321 1 1175 302 63 2 chr5 44902957 44903368 -158182164 + L2 LINE L2 2169 2604 -710 2006 122 7 0 chr5 44903437 44903754 -158181778 + AluSc SINE Alu 1 319 0 310 395 59 9 chr5 44903791 44904051 -158181481 + L2 LINE L2 2787 3054 -259 1161 284 91 30 chr5 44904056 44904528 -158181004 - LTR33A LTR ERVL 0 523 23 280 258 45 45 chr5 44904657 44904746 -158180786 + L2 LINE L2 3221 3309 -4 33 43 0 0 chr5 44905165 44905212 -158180320 + AT_rich Low_complexity Low_complexity 1 47 0 309 291 115 64 chr5 44905415 44905649 -158179883 - L3b LINE CR1 -27 1556 1311 603 288 107 17 chr5 44906190 44906423 -158179109 - MIR SINE MIR -1 261 8 318 106 0 0 chr5 44907129 44907176 -158178356 + (TA)n Simple_repeat Simple_repeat 2 48 0 189 121 0 0 chr5 44907203 44907236 -158178296 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 184 338 97 28 chr5 44907379 44907524 -158178008 + L2 LINE L2 2907 3061 -252 381 235 181 72 chr5 44908400 44908621 -158176911 - MIR SINE MIR -10 252 8 448 258 182 0 chr5 44908621 44908753 -158176779 + MER5A DNA MER1_type 33 188 -1 2323 88 0 3 chr5 44909033 44909329 -158176203 + AluSc SINE Alu 1 295 -14 1961 138 13 3 chr5 44910163 44910467 -158175065 + AluJb SINE Alu 1 307 -5 367 313 0 0 chr5 44910577 44910676 -158174856 - L2 LINE L2 -8 3305 3207 298 245 90 75 chr5 44910713 44910901 -158174631 + L2 LINE L2 3123 3313 0 27 29 0 0 chr5 44911036 44911070 -158174462 + AT_rich Low_complexity Low_complexity 1 34 0 385 219 8 62 chr5 44911398 44911526 -158174006 + MER103 DNA DNA 2 122 -44 182 279 87 48 chr5 44911747 44911851 -158173681 - L2 LINE L2 -3 3269 3162 282 243 68 0 chr5 44911969 44912043 -158173489 - MIR SINE MIR -110 98 20 248 297 42 59 chr5 44912403 44912521 -158173011 - MIR3 SINE MIR -11 197 82 510 275 14 0 chr5 44912626 44912768 -158172764 - MIR SINE MIR -111 151 8 408 321 11 60 chr5 44912892 44913157 -158172375 - MARNA DNA Mariner -8 578 327 5076 139 25 5 chr5 44913757 44914590 -158170942 + L1PA16 LINE L1 5317 6166 0 23 33 0 0 chr5 44915132 44915162 -158170370 + AT_rich Low_complexity Low_complexity 1 30 0 195 256 215 6 chr5 44916221 44916323 -158169209 - MER5B DNA MER1_type -68 121 1 564 241 84 12 chr5 44916340 44916506 -158169026 - MER5B DNA MER1_type 0 178 1 1026 226 110 28 chr5 44917770 44918089 -158167443 - MER2 DNA MER2_type 0 345 1 232 200 0 0 chr5 44918276 44918321 -158167211 - L2 LINE L2 0 3313 3269 425 341 90 14 chr5 44919053 44919264 -158166268 + MIR SINE MIR 17 243 -19 1215 258 130 17 chr5 44919854 44920674 -158164858 - L2 LINE L2 0 3313 2411 249 316 32 42 chr5 44920939 44921034 -158164498 + MER5B DNA MER1_type 64 157 -21 399 320 28 6 chr5 44921285 44921463 -158164069 + MER117 DNA MER1_type 14 195 -2 214 178 0 22 chr5 44922914 44922959 -158162573 + (CATA)n Simple_repeat Simple_repeat 3 46 0 441 0 0 0 chr5 44922959 44923008 -158162524 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 369 58 0 0 chr5 44923811 44923863 -158161669 + (TA)n Simple_repeat Simple_repeat 2 53 0 943 260 71 57 chr5 44924936 44925608 -158159924 - L1ME1 LINE L1 -217 5949 5240 204 97 0 0 chr5 44925608 44925639 -158159893 + (TG)n Simple_repeat Simple_repeat 2 32 0 25 90 0 0 chr5 44925641 44925708 -158159824 + AT_rich Low_complexity Low_complexity 1 67 0 2542 26 7 13 chr5 44926462 44926769 -158158763 - AluY SINE Alu -6 305 1 413 123 0 31 chr5 44927685 44927750 -158157782 + AluS SINE Alu 224 286 -23 36 0 0 0 chr5 44927750 44927786 -158157746 + AT_rich Low_complexity Low_complexity 1 36 0 484 275 66 109 chr5 44928158 44928369 -158157163 - MIR SINE MIR -39 223 22 217 191 27 64 chr5 44928416 44928526 -158157006 + A-rich Low_complexity Low_complexity 3 108 0 720 138 0 166 chr5 44931096 44931313 -158154219 + MER96B DNA MER1_type? 1 181 -236 22 0 0 0 chr5 44932175 44932197 -158153335 + AT_rich Low_complexity Low_complexity 1 22 0 188 278 74 0 chr5 44932882 44932936 -158152596 + L2 LINE L2 3214 3271 -1 189 0 0 0 chr5 44933004 44933025 -158152507 + (T)n Simple_repeat Simple_repeat 1 21 0 459 301 63 0 chr5 44933268 44933411 -158152121 - MIR SINE MIR -1 261 110 400 230 0 0 chr5 44933600 44933674 -158151858 + L1ME LINE L1 11 84 -6775 28 0 0 0 chr5 44933708 44933736 -158151796 + AT_rich Low_complexity Low_complexity 1 28 0 221 134 62 27 chr5 44933741 44933853 -158151679 + (TATAA)n Simple_repeat Simple_repeat 5 120 0 363 110 68 49 chr5 44933865 44934028 -158151504 + (TATAA)n Simple_repeat Simple_repeat 4 169 0 213 125 14 42 chr5 44934074 44934146 -158151386 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 21 0 0 0 chr5 44934146 44934167 -158151365 + AT_rich Low_complexity Low_complexity 1 21 0 219 125 78 0 chr5 44934168 44934232 -158151300 + (TA)n Simple_repeat Simple_repeat 1 69 0 277 107 36 24 chr5 44934273 44934357 -158151175 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 4153 229 25 37 chr5 44934364 44935331 -158150201 + L1ME LINE L1 96 1050 -5809 * 7961 230 51 22 chr5 44935321 44937790 -158147742 + L1ME LINE L1 3477 6016 -941 390 325 36 0 chr5 44937933 44938127 -158147405 + L1ME LINE L1 6373 6573 -359 22 35 0 0 chr5 44938767 44938796 -158146736 + AT_rich Low_complexity Low_complexity 1 29 0 941 217 5 0 chr5 44939670 44939854 -158145678 - MER5A DNA MER1_type -3 186 2 2015 122 3 3 chr5 44941119 44941448 -158144084 + AluSq SINE Alu 1 329 0 519 230 96 86 chr5 44941479 44941580 -158143952 + MIR SINE MIR 52 151 -111 2335 98 3 0 chr5 44941580 44941885 -158143647 - AluSx SINE Alu -6 306 1 519 230 96 86 chr5 44941885 44941992 -158143540 + MIR SINE MIR 151 262 0 472 308 25 0 chr5 44942015 44942135 -158143397 + L2 LINE L2 3150 3272 0 945 194 46 21 chr5 44942277 44942514 -158143018 + LTR23 LTR ERV1 161 403 -34 402 300 15 8 chr5 44942971 44943101 -158142431 + MIR SINE MIR 31 161 -101 1744 184 3 10 chr5 44944236 44944546 -158140986 + AluJo SINE Alu 1 308 -4 1142 65 5 32 chr5 44944600 44944620 -158140912 + (TTTC)n Simple_repeat Simple_repeat 1 199 0 1142 65 5 32 chr5 44944620 44944805 -158140727 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1849 173 0 19 chr5 44944867 44945180 -158140352 - AluJb SINE Alu -1 311 5 288 340 100 0 chr5 44945224 44945324 -158140208 + L2 LINE L2 3163 3272 0 1085 288 32 37 chr5 44945375 44945750 -158139782 + LTR16B LTR ERVL 2 374 -90 23 0 0 0 chr5 44947000 44947023 -158138509 + AT_rich Low_complexity Low_complexity 1 23 0 288 0 0 0 chr5 44947153 44947185 -158138347 + (TG)n Simple_repeat Simple_repeat 2 33 0 233 286 29 43 chr5 44947763 44947833 -158137699 + MER5A DNA MER1_type 51 119 -70 212 321 25 12 chr5 44948317 44948398 -158137134 + MIR3 SINE MIR 121 202 -6 2099 197 17 38 chr5 44949262 44949739 -158135793 - MLT1C LTR MaLR 0 467 1 1845 126 51 27 chr5 44949752 44950045 -158135487 - AluJb SINE Alu -12 300 1 188 349 36 36 chr5 44950729 44950812 -158134720 - L2 LINE L2 -2 3270 3188 188 307 34 91 chr5 44952370 44952458 -158133074 - L2 LINE L2 -89 3183 3101 237 338 150 8 chr5 44952460 44952593 -158132939 + MIR3 SINE MIR 9 160 -48 412 175 0 0 chr5 44952627 44952707 -158132825 - MER113 DNA MER1_type? -50 471 392 234 244 32 16 chr5 44952859 44952982 -158132550 - MER113 DNA MER1_type? -393 128 4 305 253 48 0 chr5 44955181 44955264 -158130268 + MIR SINE MIR 106 192 -70 2652 113 0 0 chr5 44955377 44955741 -158129791 - THE1B LTR MaLR 0 364 1 1561 71 9 0 chr5 44956130 44956340 -158129192 + L1PA7 LINE L1 5943 6154 0 270 231 0 0 chr5 44956702 44956754 -158128778 + L2 LINE L2 3221 3272 0 358 270 11 0 chr5 44957770 44957859 -158127673 - MER81 DNA DNA -24 90 1 534 236 176 7 chr5 44957876 44958024 -158127508 - MER5A DNA MER1_type -13 176 4 * 707 273 123 0 chr5 44958024 44958244 -158127288 + MIR SINE MIR 15 262 0 446 253 121 18 chr5 44958692 44958858 -158126674 + MIR SINE MIR 80 262 0 185 344 57 38 chr5 44959574 44959731 -158125801 + MIR SINE MIR 99 258 -4 614 254 68 6 chr5 44960206 44960383 -158125149 - MIR SINE MIR -65 197 10 286 358 73 28 chr5 44960807 44960986 -158124546 + MIR3 SINE MIR 19 205 -3 2112 143 0 0 chr5 44961590 44961890 -158123642 - AluSx SINE Alu -12 300 1 227 311 100 65 chr5 44961938 44962337 -158123195 + L2 LINE L2 2829 3241 -72 194 293 57 52 chr5 44962454 44962597 -158122935 - MIR SINE MIR -64 144 25 210 310 60 10 chr5 44963025 44963125 -158122407 - MER5A DNA MER1_type -5 184 80 * 319 279 53 17 chr5 44963044 44963185 -158122347 + MER5A DNA MER1_type 29 178 0 225 211 0 0 chr5 44963342 44963394 -158122138 + (TATG)n Simple_repeat Simple_repeat 3 54 0 389 129 14 0 chr5 44963494 44963564 -158121968 + (TA)n Simple_repeat Simple_repeat 2 72 0 27 81 0 0 chr5 44964566 44964628 -158120904 + AT_rich Low_complexity Low_complexity 1 62 0 35 24 0 0 chr5 44964653 44964695 -158120837 + AT_rich Low_complexity Low_complexity 1 42 0 6197 93 16 0 chr5 44966119 44967206 -158118326 - L1PA13 LINE L1 -7 6156 5083 677 229 46 102 chr5 44967754 44968125 -158117407 + LTR16A1 LTR ERVL 108 457 0 575 235 71 46 chr5 44968405 44968728 -158116804 - L1ME4a LINE L1 -16 6105 5775 2064 131 0 22 chr5 44970771 44971083 -158114449 - AluSx SINE Alu -7 305 1 1783 128 109 0 chr5 44971593 44971858 -158113674 + AluSg SINE Alu 1 294 -16 2252 88 3 7 chr5 44973242 44973536 -158111996 + AluSq SINE Alu 1 293 -20 370 299 0 0 chr5 44973543 44973640 -158111892 + L1MC4 LINE L1 6614 6710 -1332 318 241 141 55 chr5 44974167 44974457 -158111075 + Charlie4a DNA MER1_type 193 507 -1 432 263 42 0 chr5 44975948 44976043 -158109489 + L2 LINE L2 3168 3266 -6 458 342 107 16 chr5 44976230 44976540 -158108992 + L3 LINE CR1 699 1036 -541 704 302 112 65 chr5 44976629 44977347 -158108185 - L2 LINE L2 -15 3298 2311 803 149 0 0 chr5 44978023 44978164 -158107368 + L1MA5 LINE L1 6159 6299 -1 2168 121 0 7 chr5 44978639 44978937 -158106595 - AluSg SINE Alu -14 296 1 405 304 32 19 chr5 44980710 44980868 -158104664 - MIR SINE MIR -15 247 88 2101 114 27 23 chr5 44981603 44981902 -158103630 + AluSg SINE Alu 1 300 -10 309 275 288 0 chr5 44982235 44982395 -158103137 - MIR SINE MIR -46 216 11 381 285 73 67 chr5 44982776 44982955 -158102577 - MIR SINE MIR -57 205 26 678 313 83 44 chr5 44983126 44983612 -158101920 - L2 LINE L2 -845 2469 1956 1641 164 38 3 chr5 44983612 44983899 -158101633 + AluJo SINE Alu 1 297 -15 678 313 83 44 chr5 44983899 44983977 -158101555 - L2 LINE L2 -1358 1956 1883 1088 314 30 10 chr5 44984166 44984570 -158100962 - L2 LINE L2 -390 2924 2513 399 300 111 0 chr5 44984662 44984842 -158100690 - L2 LINE L2 -1577 1737 1538 1350 87 0 0 chr5 44984989 44985161 -158100371 - AluSq SINE Alu -6 307 136 1224 158 48 5 chr5 44985159 44985368 -158100164 - AluJb SINE Alu -94 218 1 * 198 294 39 39 chr5 44985383 44985485 -158100047 + L2 LINE L2 1966 2067 -1247 324 70 0 0 chr5 44985518 44985561 -158099971 + (TA)n Simple_repeat Simple_repeat 2 44 0 225 0 0 0 chr5 44985560 44985585 -158099947 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 1068 92 0 0 chr5 44985618 44985749 -158099783 - AluSq SINE Alu -182 131 1 1483 62 0 0 chr5 44986091 44986270 -158099262 - AluY SINE Alu -3 308 130 405 330 58 6 chr5 44986501 44986674 -158098858 + L3 LINE CR1 1281 1462 -115 335 313 126 42 chr5 44986695 44986909 -158098623 - MIR SINE MIR -30 232 1 315 333 121 34 chr5 44988285 44988780 -158096752 + L2 LINE L2 1932 2469 -845 2200 123 7 0 chr5 44991363 44991663 -158093869 + AluSx SINE Alu 1 302 -10 533 266 79 86 chr5 44994864 44995168 -158090364 + MLT1I LTR MaLR 82 383 -26 1042 279 77 25 chr5 44995591 44995956 -158089576 - LTR16B LTR ERVL -45 419 36 640 257 7 7 chr5 44995966 44996114 -158089418 - MIR SINE MIR -59 203 56 2295 110 0 0 chr5 44996632 44996924 -158088608 + AluSc SINE Alu 1 292 -17 351 0 0 0 chr5 44997043 44997082 -158088450 + (CA)n Simple_repeat Simple_repeat 1 39 0 523 289 34 0 chr5 44997097 44997246 -158088286 + LTR16B LTR ERVL 153 306 -158 5262 22 3 0 chr5 44997773 44998466 -158087066 - L1P1 LINE L1 -723 5432 4739 4107 44 0 0 chr5 44998466 44998965 -158086567 + L1PA4 LINE L1 5653 6152 -3 2081 124 0 7 chr5 45000125 45000424 -158085108 - AluSx SINE Alu -15 297 1 544 166 40 73 chr5 45000982 45001133 -158084399 + FRAM SINE Alu 1 146 -30 1860 117 21 7 chr5 45001651 45001933 -158083599 - AluSx SINE Alu -16 296 11 190 173 19 77 chr5 45002925 45002977 -158082555 + L2 LINE L2 3214 3262 -10 404 294 190 5 chr5 45003253 45003437 -158082095 + MIR SINE MIR 1 218 -44 35 54 0 0 chr5 45003441 45003497 -158082035 + AT_rich Low_complexity Low_complexity 1 56 0 303 291 189 8 chr5 45003542 45003669 -158081863 + MIR SINE MIR 2 151 -111 239 178 219 0 chr5 45003715 45003788 -158081744 - LTR33 LTR ERVL -9 512 424 308 263 17 42 chr5 45003923 45004041 -158081491 - LTR33 LTR ERVL -405 116 2 224 200 73 0 chr5 45004042 45004097 -158081435 + MIR SINE MIR 204 262 0 2089 271 52 54 chr5 45004457 45005605 -158079927 + L2 LINE L2 2109 3266 -47 251 299 37 0 chr5 45006283 45006390 -158079142 + MER103 DNA DNA 3 113 -53 246 221 13 65 chr5 45006495 45006572 -158078960 - MIR SINE MIR -73 189 117 1331 208 44 28 chr5 45006691 45007078 -158078454 - MLT1C LTR MaLR -12 378 9 421 328 89 32 chr5 45007613 45007718 -158077814 + MIR SINE MIR 2 100 -162 1976 128 7 0 chr5 45007718 45008000 -158077532 + AluSq SINE Alu 29 312 -1 421 328 89 32 chr5 45008000 45008141 -158077391 + MIR SINE MIR 100 262 0 377 200 0 48 chr5 45008950 45009075 -158076457 + MER113 DNA MER1_type? 65 183 -338 396 273 147 0 chr5 45009350 45009500 -158076032 + MLT1I LTR MaLR 232 403 -6 392 269 55 28 chr5 45009905 45010050 -158075482 - MIR SINE MIR -2 260 112 2256 93 22 29 chr5 45010079 45010391 -158075141 + AluSg SINE Alu 1 310 0 429 347 20 0 chr5 45011334 45011484 -158074048 + MER91A DNA MER1_type 1 153 -43 180 0 0 0 chr5 45011502 45011522 -158074010 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 1504 80 5 0 chr5 45011555 45011754 -158073778 - L1PA8 LINE L1 0 6172 5973 385 85 0 0 chr5 45011755 45011814 -158073718 + L1PA8 LINE L1 5894 5952 -179 523 300 21 52 chr5 45012156 45012483 -158073049 + MLT1K LTR MaLR 247 563 -25 480 213 0 0 chr5 45012731 45012853 -158072679 + (TA)n Simple_repeat Simple_repeat 2 123 0 301 306 85 76 chr5 45013362 45013611 -158071921 + L2 LINE L2 2732 2980 -292 185 35 69 0 chr5 45013742 45013771 -158071761 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 715 270 119 4 chr5 45013856 45014082 -158071450 + MIR SINE MIR 11 262 0 207 114 0 0 chr5 45015348 45015383 -158070149 + (TC)n Simple_repeat Simple_repeat 2 36 0 310 321 73 34 chr5 45018158 45018635 -158066897 + HAL1 LINE L1 1224 1719 -788 2006 220 51 64 chr5 45018956 45019531 -158066001 + L1ME1 LINE L1 1159 1740 -4800 1844 74 0 4 chr5 45019531 45019762 -158065770 + AluY SINE Alu 1 230 -81 2006 220 51 64 chr5 45019762 45019778 -158065754 + L1ME1 LINE L1 1740 1755 -4785 243 61 0 0 chr5 45019778 45019811 -158065721 + (CA)n Simple_repeat Simple_repeat 2 34 0 2006 220 51 64 chr5 45019811 45019999 -158065533 + L1ME1 LINE L1 1755 1929 -4611 * 4194 254 108 22 chr5 45019986 45020410 -158065122 + L1ME1 LINE L1 3533 3919 -2621 2621 52 0 3 chr5 45020410 45020720 -158064812 - AluY SINE Alu -2 309 1 4194 254 108 22 chr5 45020720 45021506 -158064026 + L1ME1 LINE L1 3919 4635 -1905 2499 55 3 3 chr5 45021506 45021814 -158063718 + AluY SINE Alu 1 308 -3 4194 254 108 22 chr5 45021814 45022686 -158062846 + L1ME1 LINE L1 4635 5797 -743 1736 225 116 58 chr5 45022692 45023362 -158062170 + L1ME1 LINE L1 5849 6557 -3 576 287 130 4 chr5 45023483 45023713 -158061819 - MIR SINE MIR -2 260 2 243 103 0 0 chr5 45024320 45024359 -158061173 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 520 148 19 0 chr5 45024496 45024604 -158060928 - L1MB1 LINE L1 0 6168 6059 2257 96 0 3 chr5 45025456 45025748 -158059784 - AluSc SINE Alu -18 291 1 1977 114 0 0 chr5 45027084 45027356 -158058176 - AluSg SINE Alu -3 307 36 654 271 83 29 chr5 45027434 45027784 -158057748 + MLT1L LTR MaLR 3 371 -244 369 239 161 15 chr5 45027828 45027958 -158057574 + MLT1L LTR MaLR 463 611 -4 545 30 0 0 chr5 45028736 45028803 -158056729 - L1PA5 LINE L1 -6 6148 6082 454 284 47 42 chr5 45030586 45030815 -158054717 + MIR SINE MIR 19 247 -15 453 61 0 184 chr5 45031006 45031104 -158054428 - MADE1 DNA Mariner 0 80 1 3300 180 23 73 chr5 45031292 45032118 -158053414 + LTR1 LTR ERV1 1 785 0 360 299 31 8 chr5 45032147 45032274 -158053258 - MIR SINE MIR 0 262 133 359 265 106 44 chr5 45033825 45034083 -158051449 - MER110A LTR ERV1 0 468 229 425 310 55 7 chr5 45035202 45035347 -158050185 + MIR SINE MIR 83 234 -28 25 75 0 0 chr5 45035365 45035418 -158050114 + AT_rich Low_complexity Low_complexity 1 53 0 24 77 0 0 chr5 45037038 45037090 -158048442 + AT_rich Low_complexity Low_complexity 1 52 0 586 283 35 0 chr5 45037143 45037316 -158048216 + MIR SINE MIR 54 232 -30 251 149 43 0 chr5 45037326 45037373 -158048159 - MIR SINE MIR -31 231 183 30 0 0 0 chr5 45037373 45037403 -158048129 + AT_rich Low_complexity Low_complexity 1 30 0 2080 112 0 0 chr5 45037422 45037699 -158047833 - AluSq SINE Alu 0 313 37 495 0 0 0 chr5 45037746 45037801 -158047731 + (GGAA)n Simple_repeat Simple_repeat 4 58 0 248 0 31 0 chr5 45037805 45037837 -158047695 + (GA)n Simple_repeat Simple_repeat 2 34 0 6518 159 23 26 chr5 45038394 45044654 -158040878 - L1PA10 LINE L1 0 6483 4 457 310 182 5 chr5 45044866 45045069 -158040463 - MIR SINE MIR -9 253 15 519 281 39 39 chr5 45045402 45045580 -158039952 + MER5A DNA MER1_type 12 189 0 363 287 93 20 chr5 45045595 45045745 -158039787 + MER5B DNA MER1_type 8 168 -10 334 290 95 9 chr5 45046011 45046242 -158039290 - L1ME4a LINE L1 -96 6025 5775 2086 98 0 64 chr5 45046425 45046601 -158038931 - AluSg1 SINE Alu -2 307 160 2309 71 3 0 chr5 45046601 45046897 -158038635 - AluY SINE Alu -14 297 1 2086 98 0 64 chr5 45046897 45047048 -158038484 - AluSg1 SINE Alu -149 160 1 2102 126 3 7 chr5 45047343 45047636 -158037896 - AluSx SINE Alu -15 297 6 418 292 59 42 chr5 45047673 45047909 -158037623 - L1ME4a LINE L1 -869 5277 5038 221 246 0 0 chr5 45048152 45048209 -158037323 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 1789 174 112 45 chr5 45048226 45048698 -158036834 - MLT1D LTR MaLR -1 504 1 40 0 0 0 chr5 45048773 45048813 -158036719 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr5 45049569 45049591 -158035941 + AT_rich Low_complexity Low_complexity 1 22 0 2430 186 12 47 chr5 45049725 45050350 -158035182 - L1MC1 LINE L1 0 6333 5776 1481 194 150 9 chr5 45050350 45050696 -158034836 - MSTD LTR MaLR -1 395 1 2430 186 12 47 chr5 45050696 45051279 -158034253 - L1MC1 LINE L1 -557 5776 5175 344 277 94 35 chr5 45052378 45052580 -158032952 + ERVL LTR ERVL 1926 2139 -3625 2127 98 18 0 chr5 45052852 45053138 -158032394 + AluSp SINE Alu 13 303 -10 399 252 84 7 chr5 45053155 45053298 -158032234 - MIR SINE MIR -56 206 53 186 263 85 51 chr5 45053361 45053386 -158032146 - L2 LINE L2 -1879 1435 1412 189 0 0 0 chr5 45053386 45053407 -158032125 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 186 263 85 51 chr5 45053407 45053499 -158032033 - L2 LINE L2 -1902 1412 1314 490 306 28 22 chr5 45053519 45053636 -158031896 + MER5A DNA MER1_type 9 129 -60 2169 68 26 0 chr5 45053636 45053902 -158031630 - AluY SINE Alu -14 297 25 490 306 28 22 chr5 45053902 45053964 -158031568 + MER5A DNA MER1_type 129 189 0 410 307 59 12 chr5 45054120 45054450 -158031082 + MLT1L LTR MaLR 202 607 -8 180 357 152 34 chr5 45054639 45054967 -158030565 - L2 LINE L2 -2281 1033 667 307 324 81 49 chr5 45055028 45055213 -158030319 - L2 LINE L2 -216 3056 2866 2237 56 0 28 chr5 45055345 45055629 -158029903 - AluY SINE Alu 0 311 36 694 127 43 0 chr5 45055673 45055885 -158029647 + CT-rich Low_complexity Low_complexity 1 221 0 811 168 6 6 chr5 45056068 45056145 -158029387 + CT-rich Low_complexity Low_complexity 3 79 -96 2022 127 10 7 chr5 45056145 45056452 -158029080 - AluSx SINE Alu -4 308 1 811 168 6 6 chr5 45056452 45056500 -158029032 + CT-rich Low_complexity Low_complexity 79 126 -49 2251 88 3 16 chr5 45056500 45056805 -158028727 - AluY SINE Alu -6 305 5 811 168 6 6 chr5 45056805 45056851 -158028681 + CT-rich Low_complexity Low_complexity 125 175 0 304 146 0 0 chr5 45056851 45056899 -158028633 + (TTTC)n Simple_repeat Simple_repeat 4 51 0 400 208 13 0 chr5 45057458 45057535 -158027997 + MER67A LTR ERV1 11 88 -455 819 233 112 75 chr5 45057655 45058035 -158027497 + MER67B LTR ERV1 83 350 -335 2369 107 0 0 chr5 45058035 45058344 -158027188 + AluSg1 SINE Alu 1 309 0 819 233 112 75 chr5 45058344 45058400 -158027132 + MER67B LTR ERV1 350 403 -282 * 915 244 19 26 chr5 45058369 45058640 -158026892 + MER67A LTR ERV1 275 543 0 2268 92 0 7 chr5 45060977 45061281 -158024251 - AluSx SINE Alu -10 302 1 244 206 95 0 chr5 45061294 45061357 -158024175 + MIR3 SINE MIR 137 205 -3 2051 130 7 3 chr5 45061756 45062055 -158023477 - AluSq SINE Alu -13 300 1 315 293 14 71 chr5 45062334 45062631 -158022901 - MER97c DNA MER1_type? -42 1048 769 24 0 0 0 chr5 45062781 45062805 -158022727 + AT_rich Low_complexity Low_complexity 1 24 0 2073 113 7 3 chr5 45062817 45063109 -158022423 + AluSg SINE Alu 12 304 -6 790 153 39 74 chr5 45063157 45063347 -158022185 - L1MC3 LINE L1 -11 7774 7592 2263 81 3 13 chr5 45063347 45063657 -158021875 - AluY SINE Alu -4 307 1 790 153 39 74 chr5 45063657 45063695 -158021837 - L1MC3 LINE L1 -193 7592 7554 286 150 9 168 chr5 45063837 45063950 -158021582 + MER97c DNA MER1_type? 454 548 -542 929 211 76 40 chr5 45063950 45064253 -158021279 - MER97b DNA MER1_type? -657 396 83 2061 109 29 0 chr5 45064263 45064576 -158020956 - L1PB2 LINE L1 -2 6149 5828 1155 188 0 0 chr5 45064649 45064856 -158020676 + MER52A LTR ERV1 1278 1484 -271 2532 104 60 52 chr5 45064859 45064937 -158020595 - L1PB2 LINE L1 -312 5839 5763 2158 108 3 43 chr5 45064937 45065261 -158020271 - AluSx SINE Alu -1 311 1 2532 104 60 52 chr5 45065261 45065662 -158019870 - L1PB2 LINE L1 -388 5763 5356 5912 181 156 55 chr5 45066059 45067648 -158017884 - MER52A LTR ERV1 0 1755 7 2084 150 7 3 chr5 45068663 45068970 -158016562 - AluSx SINE Alu -2 310 3 268 298 36 0 chr5 45069253 45069337 -158016195 - MIR SINE MIR -112 150 64 955 292 121 15 chr5 45069542 45070044 -158015488 + MLT1G1 LTR MaLR 24 582 -13 405 287 15 55 chr5 45070957 45071074 -158014458 - LTR16C LTR ERVL -18 473 366 2159 135 30 28 chr5 45071074 45071436 -158014096 - THE1B LTR MaLR -1 363 1 405 287 15 55 chr5 45071436 45071520 -158014012 - LTR16C LTR ERVL -125 366 280 26 0 0 0 chr5 45072002 45072028 -158013504 + AT_rich Low_complexity Low_complexity 1 26 0 2470 54 0 17 chr5 45072099 45072396 -158013136 + AluY SINE Alu 3 294 -17 705 265 85 13 chr5 45072643 45072949 -158012583 - MER45B DNA AcHobo 0 1040 713 512 285 4 32 chr5 45073019 45073257 -158012275 - MER45C DNA AcHobo -178 775 495 315 65 0 0 chr5 45073276 45073322 -158012210 - MADE1 DNA Mariner 0 80 35 681 343 120 9 chr5 45073635 45074067 -158011465 + L3 LINE CR1 1008 1487 -90 1620 216 120 2 chr5 45074213 45074629 -158010903 - MLT1C LTR MaLR 0 467 3 236 370 10 0 chr5 45074656 45074756 -158010776 + MIR SINE MIR 47 147 -61 210 37 0 0 chr5 45075089 45075116 -158010416 + (CA)n Simple_repeat Simple_repeat 2 28 0 2557 206 29 32 chr5 45075439 45075859 -158009673 + L1MB8 LINE L1 4666 5086 -1098 240 35 0 0 chr5 45075859 45075888 -158009644 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2557 206 29 32 chr5 45075888 45075900 -158009632 + L1MB8 LINE L1 5086 5097 -1087 2356 158 36 32 chr5 45075900 45076405 -158009127 - L1MA7 LINE L1 -3 6288 5782 2557 206 29 32 chr5 45076405 45076882 -158008650 + L1MB8 LINE L1 5097 5569 -615 2382 90 0 3 chr5 45076882 45077182 -158008350 + AluSc SINE Alu 1 299 -10 2557 206 29 32 chr5 45077182 45077442 -158008090 + L1MB8 LINE L1 5569 5828 -356 899 199 0 6 chr5 45077444 45077605 -158007927 - MER8 DNA MER2_type -1 238 79 1795 183 0 19 chr5 45077643 45078009 -158007523 + L1MB8 LINE L1 5818 6176 -2 208 350 72 0 chr5 45078075 45078172 -158007360 - L2 LINE L2 -236 3036 2933 480 207 95 99 chr5 45078199 45078421 -158007111 + MLT1E1 LTR MaLR 1 221 -433 244 284 0 0 chr5 45079249 45079330 -158006202 + T-rich Low_complexity Low_complexity 1 81 0 3298 179 82 10 chr5 45079341 45080024 -158005508 - MER44D DNA MER2_type 0 605 2 1610 164 124 13 chr5 45080520 45080941 -158004591 + MLT2B2 LTR ERVL 1 515 0 30 0 0 0 chr5 45081028 45081058 -158004474 + AT_rich Low_complexity Low_complexity 1 30 0 321 276 52 30 chr5 45082837 45082971 -158002561 + MIR SINE MIR 33 169 -93 213 333 46 35 chr5 45082960 45083047 -158002485 + L2 LINE L2 3146 3233 -39 * 26 64 0 0 chr5 45083107 45083154 -158002378 + AT_rich Low_complexity Low_complexity 1 47 0 1305 118 35 0 chr5 45083258 45083461 -158002071 + MER2 DNA MER2_type 1 210 -135 200 259 19 37 chr5 45084604 45084658 -158000874 + L3 LINE CR1 1514 1566 -11 1055 252 5 0 chr5 45084663 45084885 -158000647 - MER58A DNA MER1_type -1 223 1 25 0 0 0 chr5 45085061 45085086 -158000446 + AT_rich Low_complexity Low_complexity 1 25 0 1127 303 24 0 chr5 45085305 45085678 -157999854 + MLT1J LTR MaLR 1 382 -129 228 275 125 25 chr5 45086369 45086449 -157999083 - L2 LINE L2 -1 3271 3184 257 324 0 0 chr5 45086566 45086634 -157998898 + MER110-int LTR ERV1 3810 3877 -2924 747 322 31 44 chr5 45086722 45087306 -157998226 + MER110-int LTR ERV1 2102 2692 -4845 434 34 34 0 chr5 45087306 45087365 -157998167 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 747 322 31 44 chr5 45087365 45088112 -157997420 + MER110-int LTR ERV1 2692 6137 -1400 1824 129 0 66 chr5 45088197 45088534 -157996998 + AluSq SINE Alu 1 317 0 3148 149 19 0 chr5 45089132 45089662 -157995870 - L1PA16 LINE L1 0 6166 5627 1170 148 10 1 chr5 45089662 45089903 -157995629 + L1 LINE L1 5177 5420 -743 1471 165 22 41 chr5 45090001 45090316 -157995216 + MER39 LTR ERV1 395 703 -4 353 247 0 10 chr5 45090341 45090438 -157995094 + MER57A LTR ERV1 302 397 -6 203 371 57 44 chr5 45090526 45090774 -157994758 + L2 LINE L2 2804 3054 -218 1617 154 65 31 chr5 45091622 45091973 -157993559 + THE1C LTR MaLR 1 363 -12 470 349 89 7 chr5 45092028 45092297 -157993235 - L2 LINE L2 -362 2952 2662 255 214 51 20 chr5 45092438 45092536 -157992996 + (TAAAG)n Simple_repeat Simple_repeat 3 103 0 528 301 89 37 chr5 45093320 45093566 -157991966 - MIR SINE MIR -1 261 3 2066 130 3 3 chr5 45094194 45094486 -157991046 - AluSg SINE Alu -18 292 1 2261 110 0 10 chr5 45094616 45094926 -157990606 - AluSx SINE Alu -5 307 1 291 378 28 7 chr5 45095078 45095221 -157990311 + MIR3 SINE MIR 32 177 -31 364 348 22 0 chr5 45095918 45096056 -157989476 - MIR SINE MIR -65 197 57 1173 176 100 25 chr5 45096916 45097155 -157988377 - AluJo SINE Alu -55 257 1 5635 81 0 116 chr5 45097558 45098492 -157987040 - LTR12 LTR ERV1 0 826 1 1692 100 0 8 chr5 45098618 45098868 -157986664 - HUERS-P3b LTR ERV1 -2458 4960 4713 783 73 0 0 chr5 45098859 45098955 -157986577 - HUERS-P3b LTR ERV1 -3544 3874 3779 * 5331 65 24 1 chr5 45098955 45099755 -157985777 + HUERS-P3 LTR ERV1 4928 5822 -1596 1340 91 5 16 chr5 45099754 45099940 -157985592 + HUERS-P3 LTR ERV1 5961 6144 -1274 * 1357 145 10 0 chr5 45099933 45100140 -157985392 + HUERS-P3 LTR ERV1 8710 8918 -1 2426 137 46 14 chr5 45100140 45100655 -157984877 + LTR9B LTR ERV1 1 560 -84 237 151 0 0 chr5 45100655 45100708 -157984824 + A-rich Low_complexity Low_complexity 1 53 0 541 317 28 0 chr5 45101872 45102014 -157983518 - L2 LINE L2 0 3313 3168 22 56 0 0 chr5 45103187 45103223 -157982309 + AT_rich Low_complexity Low_complexity 1 36 0 4141 190 41 31 chr5 45103446 45103940 -157981592 + L1MB2 LINE L1 4981 5468 -703 188 33 0 33 chr5 45103940 45103970 -157981562 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4141 190 41 31 chr5 45103970 45104314 -157981218 + L1MB2 LINE L1 5468 5807 -364 2196 109 0 0 chr5 45104314 45104632 -157980900 + AluSq SINE Alu 1 318 0 4141 190 41 31 chr5 45104632 45104965 -157980567 + L1MB2 LINE L1 5807 6168 -3 23 0 0 0 chr5 45105602 45105625 -157979907 + AT_rich Low_complexity Low_complexity 1 23 0 1593 196 61 61 chr5 45106086 45106546 -157978986 + MER31B LTR ERV1 1 460 -6 2432 147 57 2 chr5 45106554 45106959 -157978573 - LOR1b LTR ERV1 0 461 29 213 39 0 0 chr5 45106959 45106985 -157978547 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2432 147 57 2 chr5 45106985 45107016 -157978516 - LOR1b LTR ERV1 -432 29 1 1484 229 10 3 chr5 45107430 45107727 -157977805 - AluJo SINE Alu -3 299 1 982 244 30 0 chr5 45107744 45107945 -157977587 + MER58A DNA MER1_type 4 210 -14 1349 210 271 39 chr5 45109284 45109529 -157976003 + MER52A LTR ERV1 3 190 -1565 1730 123 19 8 chr5 45109529 45109789 -157975743 + AluSq SINE Alu 43 305 -8 1349 210 271 39 chr5 45109789 45110009 -157975523 + MER52A LTR ERV1 190 1231 -524 476 188 54 120 chr5 45110082 45110363 -157975169 + LTR28 LTR ERV1 532 716 -304 * 1669 232 51 62 chr5 45110343 45110890 -157974642 + MER52A LTR ERV1 1213 1753 -2 217 254 17 0 chr5 45110940 45110999 -157974533 + A-rich Low_complexity Low_complexity 4 63 0 617 224 88 65 chr5 45111144 45111437 -157974095 - Charlie7 DNA MER1_type -388 2224 1925 1194 217 278 15 chr5 45111437 45111484 -157974048 - MLT2B1 LTR ERVL -2 518 485 1984 146 18 15 chr5 45111484 45111827 -157973705 + MER2 DNA MER2_type 1 344 0 1194 217 278 15 chr5 45111827 45112072 -157973460 - MLT2B1 LTR ERVL -35 485 306 2834 13 0 6 chr5 45112072 45112389 -157973143 + AluYb8 SINE Alu 1 315 -3 1194 217 278 15 chr5 45112389 45112505 -157973027 - MLT2B1 LTR ERVL -214 306 1 622 286 18 9 chr5 45112522 45112742 -157972790 - Charlie7 DNA MER1_type -706 1906 1685 335 113 0 50 chr5 45112847 45112927 -157972605 + (TA)n Simple_repeat Simple_repeat 1 76 0 500 236 81 47 chr5 45112927 45113284 -157972248 - Charlie7 DNA MER1_type -2168 444 8 204 300 0 43 chr5 45113338 45113408 -157972124 + MER5A DNA MER1_type 59 125 -64 1074 265 48 19 chr5 45114082 45114391 -157971141 + MLT1J2 LTR MaLR 3 320 -130 449 248 38 0 chr5 45114896 45115029 -157970503 - L1MC4 LINE L1 -400 7642 7505 295 191 234 7 chr5 45115152 45115293 -157970239 - L1ME4a LINE L1 -153 5968 5796 2043 94 7 10 chr5 45115293 45115592 -157969940 - L1PB1 LINE L1 -1 6150 5853 394 302 102 25 chr5 45117616 45117927 -157967605 - MLT1J LTR MaLR -130 381 1 363 343 65 12 chr5 45117945 45118114 -157967418 + MIR SINE MIR 82 259 -3 1607 303 70 20 chr5 45118564 45119162 -157966370 - MLT2E LTR ERVL 0 628 1 24 53 0 0 chr5 45119239 45119277 -157966255 + AT_rich Low_complexity Low_complexity 1 38 0 726 272 72 79 chr5 45119297 45119768 -157965764 + LTR37B LTR ERV1 1 468 0 884 210 119 18 chr5 45120353 45120572 -157964960 - MLT1D LTR MaLR -264 241 1 228 198 21 19 chr5 45121097 45121160 -157964372 + MIR SINE MIR 92 144 -64 21 0 0 0 chr5 45121787 45121808 -157963724 + AT_rich Low_complexity Low_complexity 1 21 0 486 335 35 13 chr5 45122411 45122641 -157962891 + MER110 LTR ERV1 257 491 0 1929 113 88 0 chr5 45122864 45123147 -157962385 - AluSq SINE Alu -1 312 5 1889 156 3 10 chr5 45123162 45123476 -157962056 - AluJb SINE Alu 0 312 1 303 293 32 49 chr5 45123488 45123611 -157961921 - MIR SINE MIR -110 152 32 312 111 0 0 chr5 45124281 45124335 -157961197 + (GA)n Simple_repeat Simple_repeat 1 54 0 493 246 25 17 chr5 45124580 45124698 -157960834 - AluJo SINE Alu -109 203 85 2200 141 0 0 chr5 45125584 45125896 -157959636 + AluSx SINE Alu 1 312 0 31 0 0 0 chr5 45126552 45126583 -157958949 + AT_rich Low_complexity Low_complexity 1 31 0 2232 94 0 7 chr5 45126980 45127278 -157958254 + AluSq SINE Alu 1 296 -17 869 336 55 22 chr5 45128477 45128879 -157956653 + L2 LINE L2 133 547 -2767 1805 179 24 15 chr5 45129304 45129644 -157955888 - MER2 DNA MER2_type 0 344 2 633 228 0 37 chr5 45130080 45130216 -157955316 - FLAM_A SINE Alu 0 133 3 1270 193 22 58 chr5 45130477 45130788 -157954744 + L1MB2 LINE L1 4070 4369 -1777 3110 196 34 17 chr5 45130788 45131499 -157954033 + L1MB2 LINE L1 5447 6169 -2 2197 90 3 10 chr5 45131564 45131863 -157953669 + AluY SINE Alu 2 298 -13 41549 56 10 1 chr5 45132031 45138123 -157947409 - L1PA5 LINE L1 -5 6149 1 416 183 0 0 chr5 45138382 45138464 -157947068 - L1MC2 LINE L1 -132 6212 6131 * 514 214 29 29 chr5 45138463 45138603 -157946929 + L1MC2 LINE L1 6197 6336 -8 2488 70 0 0 chr5 45140333 45140633 -157944899 - AluY SINE Alu -11 300 1 196 368 0 0 chr5 45140832 45140889 -157944643 - L2 LINE L2 -33 3239 3183 644 291 109 18 chr5 45141049 45141324 -157944208 - LTR16A LTR ERVL -148 302 3 399 297 88 96 chr5 45141940 45142840 -157942692 - HERV16 LTR ERVL -548 4448 3562 430 327 13 0 chr5 45142856 45143012 -157942520 - HERV16 LTR ERVL -2727 2269 2112 30 59 0 0 chr5 45145887 45145938 -157939594 + AT_rich Low_complexity Low_complexity 1 51 0 253 357 80 0 chr5 45147257 45147369 -157938163 - MIR SINE MIR -67 141 21 651 267 104 59 chr5 45148205 45148542 -157936990 - L2 LINE L2 -12 3301 2950 468 307 97 64 chr5 45148575 45149060 -157936472 - L2 LINE L2 -443 2871 2371 583 338 84 10 chr5 45149066 45149362 -157936170 - L2 LINE L2 -8 3305 2988 1673 302 90 51 chr5 45149412 45149626 -157935906 - L2 LINE L2 -1022 2292 2088 2352 110 0 0 chr5 45149626 45149934 -157935598 + AluSc SINE Alu 1 308 -1 1673 302 90 51 chr5 45149934 45150218 -157935314 - L2 LINE L2 -1226 2088 1817 288 0 0 0 chr5 45150218 45150250 -157935282 + (TG)n Simple_repeat Simple_repeat 1 32 0 1673 302 90 51 chr5 45150250 45151115 -157934417 - L2 LINE L2 -1497 1817 836 2200 141 0 0 chr5 45151427 45151739 -157933793 - AluSx SINE Alu 0 312 1 1033 218 15 10 chr5 45152625 45152831 -157932701 + AluJb SINE Alu 85 291 -21 24 32 0 0 chr5 45153190 45153221 -157932311 + AT_rich Low_complexity Low_complexity 1 31 0 2374 82 7 0 chr5 45153482 45153787 -157931745 + AluSc SINE Alu 1 307 -2 24 0 0 0 chr5 45155077 45155101 -157930431 + AT_rich Low_complexity Low_complexity 1 24 0 1136 178 49 13 chr5 45155148 45155373 -157930159 - MER46A DNA MER2_type -3 233 1 673 251 87 19 chr5 45155744 45155951 -157929581 - MIR SINE MIR -5 257 37 4484 122 55 87 chr5 45158224 45158424 -157927108 - L1MA9 LINE L1 -6 6306 6101 310 102 41 0 chr5 45158424 45158473 -157927059 - MADE1 DNA Mariner -29 51 1 315 0 0 0 chr5 45158473 45158508 -157927024 + (TTA)n Simple_repeat Simple_repeat 1 35 0 4484 122 55 87 chr5 45158508 45159213 -157926319 - L1MA9 LINE L1 -209 6103 5382 2501 223 35 20 chr5 45159210 45159866 -157925666 + L1MA9 LINE L1 4738 5403 -743 * 25 31 0 0 chr5 45160982 45161014 -157924518 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr5 45161337 45161360 -157924172 + AT_rich Low_complexity Low_complexity 1 23 0 375 271 85 27 chr5 45161477 45161665 -157923867 - HAL1 LINE L1 -124 2383 2185 840 231 138 80 chr5 45161878 45162599 -157922933 + L1ME LINE L1 4529 5321 -843 2118 80 42 0 chr5 45162599 45162886 -157922646 - AluSc SINE Alu -5 304 6 840 231 138 80 chr5 45162886 45163098 -157922434 + L1ME LINE L1 5321 5519 -645 544 255 34 0 chr5 45163246 45163395 -157922137 - LTR33 LTR ERVL -365 156 3 26 0 0 0 chr5 45164117 45164143 -157921389 + AT_rich Low_complexity Low_complexity 1 26 0 7102 113 14 44 chr5 45164195 45165354 -157920178 - Tigger1 DNA MER2_type -4 2414 1291 7332 158 24 18 chr5 45168371 45169673 -157915859 - Tigger1 DNA MER2_type -1109 1309 1 283 301 38 49 chr5 45169715 45169898 -157915634 - L1ME LINE L1 -420 5701 5521 288 358 114 46 chr5 45170000 45170564 -157914968 + L2 LINE L2 2496 3088 -225 702 284 143 39 chr5 45170723 45171212 -157914320 + Charlie2a DNA MER1_type 326 865 -1997 34 65 0 0 chr5 45171817 45171879 -157913653 + AT_rich Low_complexity Low_complexity 1 62 0 1472 169 117 4 chr5 45172198 45172464 -157913068 + AluSx SINE Alu 1 296 -16 227 333 99 7 chr5 45173017 45173158 -157912374 + MIR3 SINE MIR 38 191 -17 308 171 0 26 chr5 45173506 45173582 -157911950 - L1MB7 LINE L1 -2 6182 6109 951 272 99 35 chr5 45174295 45174863 -157910669 + L1M4 LINE L1 1508 2159 -4485 1395 259 128 7 chr5 45174942 45175743 -157909789 + L1M4 LINE L1 2346 3232 -3412 245 221 16 98 chr5 45175745 45175867 -157909665 + L1M4 LINE L1 5028 5139 -1505 1814 76 34 11 chr5 45176026 45176290 -157909242 - AluY SINE Alu -41 270 1 2254 92 0 3 chr5 45177790 45178093 -157907439 - AluY SINE Alu -9 302 1 2048 53 7 25 chr5 45178719 45179004 -157906528 + L1P LINE L1 4 283 -5863 14547 43 68 4 chr5 45179131 45181013 -157904519 - L1P LINE L1 -3762 2384 383 658 249 84 4 chr5 45181144 45181451 -157904081 - L1M4 LINE L1 -5143 1399 1070 436 105 186 0 chr5 45181455 45181541 -157903991 - AluSg/x SINE Alu 0 312 211 284 333 8 16 chr5 45181757 45181880 -157903652 - L1M4 LINE L1 -5668 874 753 257 0 30 0 chr5 45182144 45182177 -157903355 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 230 250 78 55 chr5 45182290 45182418 -157903114 - L1M4 LINE L1 -6304 238 108 309 133 0 0 chr5 45182421 45182466 -157903066 + MER85 DNA T2_type 95 139 0 21 0 0 0 chr5 45182589 45182610 -157902922 + AT_rich Low_complexity Low_complexity 1 21 0 2467 124 11 102 chr5 45182895 45183364 -157902168 - MSTA LTR MaLR 0 428 3 779 176 0 0 chr5 45183784 45183920 -157901612 + FLAM_C SINE Alu 8 143 0 384 262 103 0 chr5 45184120 45184227 -157901305 - MIR SINE MIR -88 174 57 21 36 0 0 chr5 45184261 45184289 -157901243 + AT_rich Low_complexity Low_complexity 1 28 0 2174 115 7 0 chr5 45184301 45184597 -157900935 + AluSg SINE Alu 3 300 -10 205 106 21 43 chr5 45184636 45184683 -157900849 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 24 0 0 0 chr5 45186058 45186082 -157899450 + AT_rich Low_complexity Low_complexity 1 24 0 679 240 258 0 chr5 45186130 45186244 -157899288 - L1MD2 LINE L1 -97 6262 6179 207 0 0 0 chr5 45186244 45186267 -157899265 + (TG)n Simple_repeat Simple_repeat 2 24 0 679 240 258 0 chr5 45186267 45186423 -157899109 - L1MD2 LINE L1 -180 6179 5922 618 313 83 13 chr5 45186718 45187018 -157898514 + Charlie2 DNA MER1_type 1 321 -2461 2652 232 46 24 chr5 45187025 45187837 -157897695 + Charlie2 DNA MER1_type 1857 2695 -167 1020 201 55 109 chr5 45187837 45188221 -157897311 - MLT1A1 LTR MaLR -2 363 1 2652 232 46 24 chr5 45188221 45188359 -157897173 + Charlie2 DNA MER1_type 2695 2828 -34 28 0 0 0 chr5 45188486 45188514 -157897018 + AT_rich Low_complexity Low_complexity 1 28 0 1085 140 5 42 chr5 45188656 45188764 -157896768 - MSTB1 LTR MaLR 0 432 333 1763 139 78 36 chr5 45188764 45189124 -157896408 + THE1C LTR MaLR 1 375 0 1085 140 5 42 chr5 45189124 45189208 -157896324 - MSTB1 LTR MaLR -99 333 247 540 161 0 0 chr5 45189215 45189302 -157896230 - AluJ/FLAM SINE Alu -225 87 1 1039 204 53 41 chr5 45189302 45189547 -157895985 - MSTB1 LTR MaLR -184 248 1 29 47 0 0 chr5 45189703 45189746 -157895786 + AT_rich Low_complexity Low_complexity 1 43 0 6476 241 64 69 chr5 45189856 45190504 -157895028 + L1M4c LINE L1 11 661 -5723 1539 205 28 3 chr5 45190504 45190792 -157894740 + AluJo SINE Alu 1 295 -17 1503 196 3 29 chr5 45190792 45191104 -157894428 + AluJo SINE Alu 1 304 -8 6476 241 64 69 chr5 45191104 45192403 -157893129 + L1M4c LINE L1 660 1947 -4437 2285 137 17 3 chr5 45192403 45192762 -157892770 + THE1B LTR MaLR 1 364 0 6476 241 64 69 chr5 45192762 45193249 -157892283 + L1M4c LINE L1 1947 2435 -3949 394 278 216 6 chr5 45193411 45193573 -157891959 - MIR SINE MIR 0 262 67 21 0 0 0 chr5 45194283 45194304 -157891228 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr5 45194442 45194471 -157891061 + AT_rich Low_complexity Low_complexity 1 29 0 407 141 207 83 chr5 45195116 45195188 -157890344 + L1MB2 LINE L1 6033 6095 -76 2349 99 0 0 chr5 45195188 45195490 -157890042 + AluSq SINE Alu 1 302 -11 407 141 207 83 chr5 45195490 45195538 -157889994 + L1MB2 LINE L1 6095 6168 -3 416 245 0 31 chr5 45195711 45195809 -157889723 + L2 LINE L2 3202 3296 -17 23 54 0 0 chr5 45195850 45195887 -157889645 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr5 45195955 45195975 -157889557 + (T)n Simple_repeat Simple_repeat 1 20 0 2227 116 7 0 chr5 45196235 45196545 -157888987 + AluSq SINE Alu 2 313 0 525 273 104 44 chr5 45196865 45197118 -157888414 - Zaphod DNA AcHobo -10 4021 3716 22 0 0 0 chr5 45197118 45197140 -157888392 + AT_rich Low_complexity Low_complexity 1 22 0 525 273 104 44 chr5 45197140 45197249 -157888283 - Zaphod DNA AcHobo -315 3716 3615 372 158 75 68 chr5 45197269 45197547 -157887985 - Zaphod DNA AcHobo -3046 985 706 23 0 0 0 chr5 45198130 45198153 -157887379 + AT_rich Low_complexity Low_complexity 1 23 0 184 316 35 18 chr5 45200202 45200259 -157885273 + MIR SINE MIR 21 78 -184 423 38 0 0 chr5 45200268 45200321 -157885211 + (TG)n Simple_repeat Simple_repeat 2 54 0 216 302 179 9 chr5 45200322 45200428 -157885104 + MIR SINE MIR 129 252 -10 2231 101 3 3 chr5 45200471 45200779 -157884753 + AluSx SINE Alu 1 308 -4 314 304 9 9 chr5 45200892 45201007 -157884525 + GA-rich Low_complexity Low_complexity 2 116 0 227 170 0 19 chr5 45201331 45201384 -157884148 + (TTA)n Simple_repeat Simple_repeat 1 52 0 3513 244 57 15 chr5 45201430 45202692 -157882840 + L1MCb LINE L1 1 1317 -4849 527 250 86 0 chr5 45202780 45202920 -157882612 + FRAM SINE Alu 1 152 -14 28 0 0 0 chr5 45202923 45202951 -157882581 + AT_rich Low_complexity Low_complexity 1 28 0 1237 246 85 14 chr5 45203040 45203406 -157882126 + L1M4 LINE L1 3718 4109 -2037 243 0 0 0 chr5 45203407 45203434 -157882098 + (A)n Simple_repeat Simple_repeat 1 27 0 478 271 0 0 chr5 45203444 45203551 -157881981 - FLAM_A SINE Alu -26 116 10 284 258 0 0 chr5 45203557 45203623 -157881909 + L1M4 LINE L1 4097 4162 -1984 280 243 63 9 chr5 45203892 45204003 -157881529 - L1MC4 LINE L1 -824 7218 7102 585 263 0 0 chr5 45204085 45204203 -157881329 - MER45C DNA AcHobo -835 118 1 611 261 8 8 chr5 45205006 45205136 -157880396 + MER45A DNA AcHobo 11 140 -38 2445 73 0 6 chr5 45205186 45205499 -157880033 + AluY SINE Alu 1 311 0 1396 178 44 18 chr5 45206600 45206875 -157878657 - MLT1C LTR MaLR -183 284 3 2567 193 13 28 chr5 45207620 45208155 -157877377 - L1PA16 LINE L1 -1 6165 5639 * 4056 202 13 13 chr5 45208152 45209051 -157876481 + L1 LINE L1 4066 4964 -1182 2536 68 3 0 chr5 45209065 45209374 -157876158 - AluSp SINE Alu -3 310 1 782 231 118 25 chr5 45209374 45209800 -157875732 - Charlie2 DNA MER1_type -386 2476 2008 366 181 0 0 chr5 45209799 45209871 -157875661 + Charlie2 DNA MER1_type 1938 2009 -853 * 23 0 0 0 chr5 45210563 45210586 -157874946 + AT_rich Low_complexity Low_complexity 1 23 0 1898 126 42 3 chr5 45211029 45211315 -157874217 + AluSx SINE Alu 1 297 -15 284 288 131 50 chr5 45211331 45211379 -157874153 + MIR3 SINE MIR 4 47 -161 1641 198 33 17 chr5 45211379 45211535 -157873997 - MLT1A1 LTR MaLR 0 365 213 1832 166 31 0 chr5 45211535 45211824 -157873708 - AluSx SINE Alu -14 298 1 1641 198 33 17 chr5 45211824 45212026 -157873506 - MLT1A1 LTR MaLR -152 213 1 284 288 131 50 chr5 45212026 45212137 -157873395 + MIR3 SINE MIR 47 176 -32 270 248 40 84 chr5 45212470 45212672 -157872860 - HAL1b LINE L1 -3 1345 1153 5127 143 21 13 chr5 45212723 45213594 -157871938 - L1PA15 LINE L1 -6 6159 5282 511 283 21 11 chr5 45213701 45213892 -157871640 - HAL1b LINE L1 -630 718 526 428 358 51 32 chr5 45214065 45214378 -157871154 - HAL1b LINE L1 -927 421 103 342 357 94 9 chr5 45215798 45216022 -157869510 - L1MC4a LINE L1 -1734 6074 5832 4017 114 15 5 chr5 45216038 45216652 -157868880 - L1PA13 LINE L1 -6 6157 5538 728 94 0 0 chr5 45216652 45216748 -157868784 + L1PA12 LINE L1 6 101 -7480 248 304 120 0 chr5 45216746 45216871 -157868661 - L1MC4a LINE L1 -1985 5823 5684 * 524 257 61 37 chr5 45216888 45217012 -157868520 - L1MC4a LINE L1 -2239 5569 5436 3316 176 7 10 chr5 45217012 45217619 -157867913 - MER6A DNA MER2_type 0 605 1 524 257 61 37 chr5 45217619 45217708 -157867824 - L1MC4a LINE L1 -2372 5436 5351 557 106 0 0 chr5 45218990 45219075 -157866457 + Alu SINE Alu 225 309 0 531 351 144 3 chr5 45219075 45219465 -157866067 - L2 LINE L2 -1494 1820 1376 189 0 0 0 chr5 45219608 45219629 -157865903 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 198 0 0 0 chr5 45219628 45219650 -157865882 + (TA)n Simple_repeat Simple_repeat 1 22 0 234 0 0 0 chr5 45221129 45221155 -157864377 + (TTG)n Simple_repeat Simple_repeat 2 27 0 948 236 102 38 chr5 45221217 45221590 -157863942 - MLT2C1 LTR ERVL 0 397 1 238 314 81 16 chr5 45222989 45223113 -157862419 - MARNA DNA Mariner -81 505 374 450 313 28 28 chr5 45223507 45223721 -157861811 + MLT1I LTR MaLR 19 232 -177 2284 50 14 0 chr5 45224960 45225239 -157860293 + AluY SINE Alu 1 283 -28 373 181 42 0 chr5 45225907 45225978 -157859554 - Charlie7 DNA MER1_type -614 1998 1925 915 224 18 7 chr5 45225978 45226025 -157859507 - MLT2B2 LTR ERVL -2 513 468 1984 146 18 15 chr5 45226025 45226368 -157859164 + MER2 DNA MER2_type 1 344 0 915 224 18 7 chr5 45226368 45226600 -157858932 - MLT2B2 LTR ERVL -47 468 144 2387 46 0 0 chr5 45226613 45226896 -157858636 + AluY SINE Alu 1 283 -28 1861 205 8 13 chr5 45227667 45228058 -157857474 - MLT1B LTR MaLR 0 390 2 1746 171 129 3 chr5 45228144 45228524 -157857008 - MER63B DNA MER1_type -8 428 1 404 288 129 6 chr5 45228748 45228911 -157856621 + MIR SINE MIR 49 231 -31 1132 287 35 39 chr5 45229284 45229744 -157855788 + LTR16B LTR ERVL 3 460 -4 2335 318 55 41 chr5 45230021 45230578 -157854954 + HERV16 LTR ERVL 299 846 -4150 2126 124 0 0 chr5 45230578 45230860 -157854672 + AluSx SINE Alu 1 282 -30 2335 318 55 41 chr5 45230860 45230873 -157854659 + HERV16 LTR ERVL 846 857 -4139 195 42 0 0 chr5 45230873 45230897 -157854635 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2335 318 55 41 chr5 45230897 45231577 -157853955 + HERV16 LTR ERVL 857 1568 -3428 342 274 57 63 chr5 45231764 45231939 -157853593 - MERVL LTR ERVL -1179 4306 4136 660 287 40 60 chr5 45232019 45232367 -157853165 - MERVL LTR ERVL -1303 3693 3353 1087 307 41 14 chr5 45232423 45232859 -157852673 - LTR16B LTR ERVL -14 450 3 301 247 86 0 chr5 45232909 45233002 -157852530 + MER103 DNA DNA 57 157 -9 28 0 0 0 chr5 45233443 45233471 -157852061 + AT_rich Low_complexity Low_complexity 1 28 0 1864 234 16 59 chr5 45234846 45235808 -157849724 - L1ME1 LINE L1 -123 6043 5017 1829 161 49 23 chr5 45235808 45236157 -157849375 + MER46B DNA MER2_type 4 236 0 1864 234 16 59 chr5 45236157 45236326 -157849206 - L1ME1 LINE L1 -1149 5017 4842 1813 230 4 32 chr5 45236356 45236817 -157848715 - L1ME LINE L1 -458 5708 5261 1742 259 58 37 chr5 45236787 45237495 -157848037 - L1ME1 LINE L1 -1309 4837 4115 * 1974 96 54 7 chr5 45237798 45238078 -157847454 + AluSg SINE Alu 1 293 -17 304 359 41 21 chr5 45238906 45239051 -157846481 + MIR SINE MIR 53 200 -62 201 323 42 21 chr5 45240948 45241044 -157844488 + L2 LINE L2 2920 3017 -255 229 262 0 0 chr5 45241721 45241782 -157843750 - Charlie7 DNA MER1_type -2136 476 416 1363 207 126 24 chr5 45241799 45242171 -157843361 + MER66A LTR ERV1 29 438 -40 232 348 36 0 chr5 45242207 45242319 -157843213 - Charlie7 DNA MER1_type -2239 373 258 1630 281 16 21 chr5 45242326 45242810 -157842722 - MLT1H1 LTR MaLR -5 550 69 1861 131 4 0 chr5 45243627 45243886 -157841646 + AluSx SINE Alu 1 260 -52 1735 162 107 23 chr5 45243901 45244247 -157841285 - THE1C LTR MaLR 0 375 1 254 350 107 13 chr5 45245778 45246087 -157839445 + L1MC/D LINE L1 5282 5619 -2189 768 186 87 0 chr5 45246201 45246373 -157839159 + L1MA4 LINE L1 6108 6294 -6 801 146 85 38 chr5 45246385 45246452 -157839080 - MER96B DNA MER1_type? -47 370 308 2135 104 3 22 chr5 45246452 45246769 -157838763 + AluY SINE Alu 1 311 0 801 146 85 38 chr5 45246769 45246913 -157838619 - MER96B DNA MER1_type? -109 308 149 260 200 0 0 chr5 45246921 45246966 -157838566 + MER96B DNA MER1_type? 373 417 0 234 0 0 0 chr5 45247501 45247527 -157838005 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 595 229 57 69 chr5 45247807 45247982 -157837550 + MER5B DNA MER1_type 1 173 -5 231 243 14 29 chr5 45248018 45248088 -157837444 + MER5A DNA MER1_type 39 107 -82 344 249 11 102 chr5 45249268 45249405 -157836127 - FLAM_A SINE Alu -29 104 1 278 336 90 27 chr5 45251055 45251311 -157834221 + L2 LINE L2 2391 2662 -652 3131 198 29 89 chr5 45251778 45252806 -157832726 - LTR5 LTR ERVK 0 969 4 1287 273 114 12 chr5 45252970 45253749 -157831783 + L2 LINE L2 2480 3312 -1 236 275 38 25 chr5 45253785 45253865 -157831667 + MIR3 SINE MIR 125 205 -3 927 237 119 58 chr5 45254068 45254537 -157830995 + LTR33 LTR ERVL 6 503 -18 1937 164 6 6 chr5 45254611 45254923 -157830609 + AluJo SINE Alu 1 312 0 2301 104 3 0 chr5 45256574 45256881 -157828651 + AluSg SINE Alu 1 308 -2 2196 122 0 0 chr5 45256939 45257242 -157828290 + AluSc SINE Alu 1 303 -6 714 143 23 8 chr5 45257291 45257424 -157828108 + L1MB3 LINE L1 6041 6175 -8 1808 164 14 0 chr5 45257785 45258077 -157827455 + AluJb SINE Alu 12 307 -5 4374 192 36 8 chr5 45258121 45259049 -157826483 + L1P4 LINE L1 4379 5332 -814 443 136 0 144 chr5 45259051 45259132 -157826400 + MER50 LTR ERV1 498 558 -176 2169 90 4 0 chr5 45259132 45259437 -157826095 - AluSx SINE Alu 0 310 5 443 136 0 144 chr5 45259437 45259479 -157826053 + MER50 LTR ERV1 558 604 -130 2124 129 26 6 chr5 45259484 45259826 -157825706 + L1P4 LINE L1 5317 5665 -500 193 303 30 0 chr5 45261910 45261976 -157823556 - MIR SINE MIR -1 261 194 815 196 0 7 chr5 45261985 45262133 -157823399 - FRAM SINE Alu -27 149 3 342 0 0 0 chr5 45262135 45262173 -157823359 + (TG)n Simple_repeat Simple_repeat 1 38 0 273 250 40 13 chr5 45262319 45262395 -157823137 - HAL1b LINE L1 -439 909 832 312 227 10 21 chr5 45262510 45262607 -157822925 - HAL1b LINE L1 -507 841 746 363 264 0 0 chr5 45262636 45262723 -157822809 - HAL1 LINE L1 -343 2164 2078 1768 182 16 65 chr5 45263506 45263890 -157821642 + MLT1A1 LTR MaLR 1 365 0 1147 200 111 51 chr5 45264026 45264341 -157821191 - MLT1D LTR MaLR 0 505 172 341 248 20 30 chr5 45264592 45264693 -157820839 - MIR SINE MIR -134 128 29 740 239 68 56 chr5 45264845 45265096 -157820436 + MIR SINE MIR 9 262 0 2170 147 48 17 chr5 45265735 45266088 -157819444 + THE1B LTR MaLR 1 364 0 3280 86 22 12 chr5 45266088 45266579 -157818953 + THE1B-int LTR MaLR 1 496 -1084 7973 165 60 17 chr5 45266732 45268208 -157817324 + MLT1A1-int LTR MaLR 113 1651 0 2788 138 23 28 chr5 45268208 45268636 -157816896 + MSTB LTR MaLR 1 426 0 392 157 48 24 chr5 45268658 45268741 -157816791 - L1M4 LINE L1 -1232 4914 4830 363 222 24 32 chr5 45268888 45269014 -157816518 + CT-rich Low_complexity Low_complexity 4 128 0 322 271 198 44 chr5 45269027 45269300 -157816232 - HAL1 LINE L1 -1312 1195 881 22 56 0 0 chr5 45269901 45269937 -157815595 + AT_rich Low_complexity Low_complexity 1 36 0 471 304 93 12 chr5 45270470 45270631 -157814901 + MER91A DNA MER1_type 1 174 -22 230 325 13 26 chr5 45270641 45270718 -157814814 + MER91A DNA MER1_type 121 196 0 1366 127 71 24 chr5 45271168 45271420 -157814112 - MSTA LTR MaLR -164 264 1 1110 165 12 22 chr5 45271420 45271629 -157813903 - L1MC/D LINE L1 -545 5626 5419 263 305 191 0 chr5 45272604 45272735 -157812797 + MIR3 SINE MIR 33 188 -20 509 281 20 7 chr5 45274223 45274376 -157811156 - MER103 DNA DNA 0 166 12 2224 127 3 0 chr5 45274460 45274768 -157810764 + AluSx SINE Alu 1 309 -3 28 0 0 0 chr5 45274894 45274922 -157810610 + AT_rich Low_complexity Low_complexity 1 28 0 386 0 0 0 chr5 45275200 45275244 -157810288 - MADE1 DNA Mariner 0 80 37 341 91 169 0 chr5 45275996 45276073 -157809459 + AluSc SINE Alu 203 292 -7 234 0 0 0 chr5 45277962 45277988 -157807544 + (T)n Simple_repeat Simple_repeat 1 26 0 316 265 24 12 chr5 45279379 45279462 -157806070 + MIR SINE MIR 28 111 -151 2208 108 7 0 chr5 45279593 45279888 -157805644 + AluSp SINE Alu 1 297 -16 1669 147 82 0 chr5 45280136 45280428 -157805104 - L1MC1 LINE L1 -30 6303 5988 187 295 180 0 chr5 45281592 45281653 -157803879 + MER5B DNA MER1_type 51 122 -56 342 298 147 23 chr5 45281802 45282020 -157803512 + MIR SINE MIR 10 254 -8 2130 119 0 3 chr5 45282028 45282323 -157803209 + AluSg1 SINE Alu 1 294 -15 697 279 60 4 chr5 45282665 45282898 -157802634 - MLT1L LTR MaLR -2 613 368 2684 38 0 13 chr5 45282954 45283269 -157802263 + AluY SINE Alu 1 311 0 477 240 40 32 chr5 45283269 45283394 -157802138 - MLT1L LTR MaLR -338 277 152 447 306 37 0 chr5 45283422 45283530 -157802002 + L2 LINE L2 3161 3272 0 1369 164 61 24 chr5 45284224 45284517 -157801015 + AluJo SINE Alu 9 312 0 302 215 153 62 chr5 45284636 45284829 -157800703 - L1ME4a LINE L1 -4 6117 5943 1740 154 27 13 chr5 45284829 45285127 -157800405 - AluJb SINE Alu -10 302 1 302 215 153 62 chr5 45285127 45285327 -157800205 - L1ME4a LINE L1 -178 5943 5652 356 203 0 0 chr5 45285531 45285600 -157799932 + AluJ/FLAM SINE Alu 1 69 -233 243 231 0 0 chr5 45285629 45285681 -157799851 + G-rich Low_complexity Low_complexity 1 52 0 830 180 111 11 chr5 45285684 45285873 -157799659 + MER50 LTR ERV1 33 240 -494 * 1930 115 7 7 chr5 45285856 45286135 -157799397 + MER50 LTR ERV1 433 711 -23 258 267 0 0 chr5 45286136 45286196 -157799336 + FLAM_A SINE Alu 67 126 -7 181 326 132 16 chr5 45286453 45286582 -157798950 + MIR SINE MIR 3 146 -116 272 279 196 13 chr5 45286614 45286772 -157798760 - MIR SINE MIR -54 208 22 953 166 44 57 chr5 45286920 45287149 -157798383 - MER96B DNA MER1_type? 0 417 192 41 87 0 0 chr5 45287964 45288068 -157797464 + AT_rich Low_complexity Low_complexity 1 104 0 2202 96 17 3 chr5 45288074 45288376 -157797156 + AluSx SINE Alu 1 306 -6 662 281 81 37 chr5 45288621 45288967 -157796565 - MLT1J2 LTR MaLR -36 410 19 425 315 13 34 chr5 45288990 45289228 -157796304 + L1MC4a LINE L1 5694 5926 -1882 394 238 70 75 chr5 45289228 45289455 -157796077 + L1MC4a LINE L1 5711 5936 -1872 261 206 0 48 chr5 45289898 45289961 -157795571 + MLT1J2 LTR MaLR 38 97 -353 241 263 30 61 chr5 45290177 45290276 -157795256 - L2 LINE L2 -12 3260 3165 1658 193 52 60 chr5 45290384 45290726 -157794806 - MLT2B1 LTR ERVL -139 381 41 4306 61 322 0 chr5 45290726 45291351 -157794181 + LTR12 LTR ERV1 1 826 0 1658 193 52 60 chr5 45291351 45291392 -157794140 - MLT2B1 LTR ERVL -479 41 1 628 267 107 15 chr5 45293247 45293453 -157792079 + MIR SINE MIR 23 247 -15 183 393 9 0 chr5 45293502 45293609 -157791923 - L2 LINE L2 -642 2672 2565 467 308 128 73 chr5 45294196 45294663 -157790869 + MLT1K LTR MaLR 96 588 0 676 209 310 45 chr5 45295483 45295751 -157789781 + MLT1D LTR MaLR 1 339 -166 * 2195 148 36 44 chr5 45295738 45295781 -157789751 - MLT2D LTR ERVL -6 408 366 297 0 0 0 chr5 45295781 45295814 -157789718 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 2195 148 36 44 chr5 45295814 45295953 -157789579 - MLT2D LTR ERVL -48 366 227 2285 109 6 3 chr5 45295953 45296265 -157789267 + AluSp SINE Alu 1 313 0 2195 148 36 44 chr5 45296265 45296492 -157789040 - MLT2D LTR ERVL -187 227 1 673 186 161 47 chr5 45297261 45297372 -157788160 + Charlie4a DNA MER1_type 126 223 -1738 2334 89 0 7 chr5 45297372 45297674 -157787858 + AluSx SINE Alu 1 300 -12 673 186 161 47 chr5 45297674 45297841 -157787691 + Charlie4a DNA MER1_type 223 436 -72 894 164 0 0 chr5 45297846 45297980 -157787552 + AluJo SINE Alu 1 134 -178 414 149 27 14 chr5 45297980 45298054 -157787478 + Charlie4a DNA MER1_type 431 505 -3 2061 144 99 9 chr5 45298786 45299120 -157786412 - MLT1A1 LTR MaLR -1 364 1 645 252 110 8 chr5 45299907 45300125 -157785407 - MIR SINE MIR -11 251 15 2386 119 9 9 chr5 45300169 45300506 -157785026 - MER1B DNA MER1_type 0 337 1 679 217 84 110 chr5 45302220 45302499 -157783033 + L1MC4a LINE L1 5581 5866 -255 1830 158 3 10 chr5 45302499 45302790 -157782742 + AluJb SINE Alu 1 289 -23 207 0 0 0 chr5 45302792 45302815 -157782717 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 234 0 0 0 chr5 45302814 45302840 -157782692 + (TA)n Simple_repeat Simple_repeat 1 26 0 679 217 84 110 chr5 45302815 45302926 -157782606 + L1MC4a LINE L1 5867 5945 -176 231 36 0 0 chr5 45302931 45302959 -157782573 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1153 172 21 0 chr5 45302961 45303153 -157782379 - AluJo SINE Alu -30 282 87 21 36 0 0 chr5 45303153 45303181 -157782351 + AT_rich Low_complexity Low_complexity 1 28 0 451 307 40 28 chr5 45303181 45303357 -157782175 + MER5A DNA MER1_type 12 189 0 967 179 5 32 chr5 45303445 45303635 -157781897 - AluJo SINE Alu -2 310 126 2029 118 6 53 chr5 45303777 45304098 -157781434 + AluSx SINE Alu 1 306 -6 406 280 48 8 chr5 45304162 45304287 -157781245 - L2 LINE L2 -1 3312 3183 210 275 73 46 chr5 45304311 45304420 -157781112 - L2 LINE L2 -249 3064 2953 496 254 14 22 chr5 45305739 45305877 -157779655 + MER5A DNA MER1_type 52 188 -1 653 295 36 10 chr5 45306055 45306248 -157779284 - MER115 DNA AcHobo -438 255 58 2628 34 7 0 chr5 45306745 45307043 -157778489 - AluY SINE Alu -11 300 1 30 77 0 0 chr5 45307938 45308003 -157777529 + AT_rich Low_complexity Low_complexity 1 65 0 316 115 39 0 chr5 45308037 45308089 -157777443 - MER116 DNA Mariner 0 80 27 368 130 14 0 chr5 45309916 45309985 -157775547 + CT-rich Low_complexity Low_complexity 1 70 0 24 0 0 0 chr5 45311136 45311160 -157774372 + AT_rich Low_complexity Low_complexity 1 24 0 252 236 0 0 chr5 45311330 45311419 -157774113 + T-rich Low_complexity Low_complexity 1 89 0 351 279 72 72 chr5 45311490 45311852 -157773680 - L1M3c LINE L1 -4591 1550 1189 322 319 72 42 chr5 45311923 45312089 -157773443 + MIR SINE MIR 9 179 -83 241 194 65 0 chr5 45313207 45313269 -157772263 + (CAGAGA)n Simple_repeat Simple_repeat 2 67 0 250 234 78 0 chr5 45314131 45314195 -157771337 + MIR SINE MIR 36 104 -104 1712 207 30 22 chr5 45314422 45314784 -157770748 - MLT1A1 LTR MaLR 0 365 1 273 164 0 36 chr5 45314978 45315033 -157770499 - MIR3 SINE MIR -48 160 108 1885 149 7 13 chr5 45315427 45315736 -157769796 + AluJb SINE Alu 1 307 -5 1757 199 30 38 chr5 45315800 45316193 -157769339 - MLT1B LTR MaLR 0 390 1 7698 184 114 20 chr5 45316417 45318017 -157767515 + MER52A LTR ERV1 6 1755 0 2634 154 90 0 chr5 45318172 45318489 -157767043 + L1MB2 LINE L1 5450 5826 -345 180 0 0 0 chr5 45318489 45318509 -157767023 + (TA)n Simple_repeat Simple_repeat 1 20 0 2634 154 90 0 chr5 45318509 45318670 -157766862 + L1MB2 LINE L1 5826 5971 -200 1647 209 3 3 chr5 45318670 45318962 -157766570 + AluJo SINE Alu 1 292 -20 322 65 0 0 chr5 45318978 45319024 -157766508 - L1PA7 LINE L1 -4 6150 6105 293 286 0 14 chr5 45319126 45319196 -157766336 - MER5B DNA MER1_type -109 69 1 2043 113 3 7 chr5 45319399 45319706 -157765826 + AluSx SINE Alu 2 307 0 2444 121 39 17 chr5 45319776 45320132 -157765400 - THE1B LTR MaLR 0 364 1 4879 87 0 11 chr5 45320132 45320787 -157764745 - THE1B-int LTR MaLR 0 1580 933 468 215 0 9 chr5 45322244 45322351 -157763181 - AluSp/q SINE Alu 0 313 208 190 315 27 0 chr5 45323071 45323144 -157762388 + L2 LINE L2 3192 3266 -47 1719 154 39 0 chr5 45324463 45324742 -157760790 - AluJo SINE Alu 0 312 23 699 266 58 11 chr5 45324742 45325020 -157760512 + L1MC4a LINE L1 5597 5887 -1921 1905 123 28 14 chr5 45325049 45325334 -157760198 + AluSx SINE Alu 1 289 -23 329 279 37 37 chr5 45325710 45325846 -157759686 - LTR67 LTR ERVL -266 291 156 974 231 15 132 chr5 45326833 45327357 -157758175 - LTR67 LTR ERVL 0 557 95 269 230 115 30 chr5 45327589 45327754 -157757778 - L1ME4a LINE L1 -4 6117 5939 1643 168 68 0 chr5 45328145 45328425 -157757107 + AluJo SINE Alu 1 299 -13 228 219 171 8 chr5 45328436 45328559 -157756973 - L1ME4a LINE L1 -844 5302 5160 251 261 149 30 chr5 45328689 45328823 -157756709 + L2 LINE L2 2366 2515 -799 1674 117 0 0 chr5 45328926 45329148 -157756384 - AluSx SINE Alu -90 222 1 415 274 134 24 chr5 45329731 45330402 -157755130 + L1MC5 LINE L1 7098 7671 -290 715 195 76 22 chr5 45330402 45330587 -157754945 + LTR41 LTR ERVL 1 195 -578 2183 92 0 42 chr5 45331045 45331351 -157754181 - AluSg SINE Alu -17 293 1 296 24 0 24 chr5 45331383 45331425 -157754107 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 619 206 122 23 chr5 45331433 45331564 -157753968 - FRAM SINE Alu -32 144 1 1678 149 41 30 chr5 45331574 45331869 -157753663 - AluJb SINE Alu -14 298 1 396 153 14 0 chr5 45331869 45331941 -157753591 + LTR41 LTR ERVL 700 772 -1 493 223 69 8 chr5 45331946 45332076 -157753456 + L1MC4 LINE L1 7781 7918 -124 228 280 17 59 chr5 45332107 45332225 -157753307 + L1MC4 LINE L1 7904 8016 -26 1731 157 7 27 chr5 45332242 45332535 -157752997 + AluJb SINE Alu 1 287 -25 215 159 23 0 chr5 45333332 45333376 -157752156 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 264 269 184 18 chr5 45333400 45333709 -157751823 + LTR16A1 LTR ERVL 55 457 0 381 228 53 132 chr5 45333959 45334187 -157751345 - L1ME4a LINE L1 -1353 4793 4584 1523 154 82 18 chr5 45334261 45334541 -157750991 - AluJo SINE Alu -14 298 1 495 0 0 0 chr5 45334957 45335012 -157750520 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 2313 101 0 0 chr5 45335310 45335606 -157749926 - AluSx SINE Alu -16 296 1 25 0 0 0 chr5 45335658 45335683 -157749849 + AT_rich Low_complexity Low_complexity 1 25 0 1534 108 0 0 chr5 45335759 45335962 -157749570 - AluY SINE Alu -21 290 88 2262 96 7 7 chr5 45337139 45337440 -157748092 - AluSq SINE Alu -12 301 1 597 260 33 69 chr5 45337440 45337744 -157747788 - MER97c DNA MER1_type? -30 1060 768 2040 224 94 4 chr5 45338060 45338561 -157746971 - MER97b DNA MER1_type? -448 605 60 350 74 147 0 chr5 45338798 45338893 -157746639 + L1P4 LINE L1 5379 5487 -687 369 127 0 0 chr5 45339177 45339232 -157746300 - Alu SINE Alu -248 55 1 22 35 0 0 chr5 45339569 45339598 -157745934 + AT_rich Low_complexity Low_complexity 1 29 0 1970 153 0 0 chr5 45339598 45339892 -157745640 - AluSx SINE Alu -18 294 1 2176 256 51 47 chr5 45340014 45341569 -157743963 - L1ME2 LINE L1 -19 6145 4497 2844 136 23 21 chr5 45341672 45342099 -157743433 - MSTA LTR MaLR 0 428 1 226 353 26 33 chr5 45343632 45343785 -157741747 - MIR3 SINE MIR -23 185 34 308 283 8 25 chr5 45343820 45343940 -157741592 - HERV16 LTR ERVL -292 4704 4587 874 289 21 7 chr5 45343992 45344272 -157741260 - HERV16 LTR ERVL -4695 301 18 375 303 34 62 chr5 45344361 45344569 -157740963 - LTR16A LTR ERVL -216 234 33 402 108 0 0 chr5 45345213 45345278 -157740254 + (TG)n Simple_repeat Simple_repeat 2 66 0 434 220 152 40 chr5 45346322 45346645 -157738887 - HAL1b LINE L1 -26 1322 964 771 274 69 33 chr5 45346695 45347118 -157738414 - HAL1b LINE L1 -451 897 460 2121 132 58 28 chr5 45347118 45347482 -157738050 + THE1C LTR MaLR 1 375 0 2701 134 9 9 chr5 45347484 45347908 -157737624 + THE1C-int LTR MaLR 3 426 -1154 1221 175 57 39 chr5 45347947 45348227 -157737305 + THE1C LTR MaLR 91 375 0 2546 167 53 13 chr5 45349184 45349633 -157735899 + MLT1C LTR MaLR 1 467 0 26 30 0 0 chr5 45352093 45352126 -157733406 + AT_rich Low_complexity Low_complexity 1 33 0 5531 153 30 39 chr5 45352842 45353326 -157732206 - L1MA5A LINE L1 -8 6289 5802 240 35 0 0 chr5 45353326 45353355 -157732177 + (TATG)n Simple_repeat Simple_repeat 4 32 0 5531 153 30 39 chr5 45353355 45354490 -157731042 - L1MA5A LINE L1 -495 5802 4702 234 0 0 0 chr5 45354490 45354516 -157731016 + (TG)n Simple_repeat Simple_repeat 1 26 0 5531 153 30 39 chr5 45354516 45354996 -157730536 - L1MA5A LINE L1 -1595 4702 4219 5120 105 21 3 chr5 45355678 45356432 -157729100 - L1PA11 LINE L1 -1 6173 5406 396 297 159 47 chr5 45356451 45356791 -157728741 - LTR16C LTR ERVL 0 491 114 254 349 114 30 chr5 45357838 45357924 -157727608 - L2 LINE L2 -2 3270 3193 2758 88 0 6 chr5 45357924 45358286 -157727246 - THE1B LTR MaLR -2 362 3 254 349 114 30 chr5 45358286 45358791 -157726741 - L2 LINE L2 -79 3193 2587 22 56 0 0 chr5 45358850 45358886 -157726646 + AT_rich Low_complexity Low_complexity 1 36 0 2355 88 20 0 chr5 45360296 45360601 -157724931 - AluY SINE Alu 0 311 1 512 333 91 21 chr5 45360796 45361135 -157724397 - L3 LINE CR1 -171 1406 1044 23 68 0 0 chr5 45361331 45361375 -157724157 + AT_rich Low_complexity Low_complexity 1 44 0 180 176 0 0 chr5 45361382 45361416 -157724116 + T-rich Low_complexity Low_complexity 1 34 0 461 330 105 72 chr5 45361423 45362361 -157723171 - L2 LINE L2 -32 3240 2266 610 356 134 27 chr5 45362859 45363673 -157721859 - L3 LINE CR1 -248 1329 429 264 148 25 49 chr5 45363784 45363865 -157721667 + A-rich Low_complexity Low_complexity 4 82 0 413 266 144 21 chr5 45364392 45364719 -157720813 - L1ME4a LINE L1 -230 5891 5525 207 188 0 0 chr5 45364760 45364808 -157720724 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 372 300 9 27 chr5 45365053 45365163 -157720369 + L2 LINE L2 2636 2743 -571 249 312 128 28 chr5 45365468 45365609 -157719923 + L2 LINE L2 3118 3272 0 225 364 66 20 chr5 45366596 45366794 -157718738 + MIR SINE MIR 6 212 -50 205 271 14 57 chr5 45366916 45366986 -157718546 + L3 LINE CR1 317 383 -1194 335 91 0 18 chr5 45367422 45367477 -157718055 - MLT2A2 LTR ERVL 0 453 400 483 73 0 0 chr5 45367480 45367548 -157717984 + (TA)n Simple_repeat Simple_repeat 1 68 0 224 327 0 0 chr5 45367548 45367603 -157717929 + L2 LINE L2 3213 3267 -5 405 121 36 0 chr5 45367724 45367807 -157717725 + (TA)n Simple_repeat Simple_repeat 2 87 0 2624 86 70 3 chr5 45367812 45368186 -157717346 - MLT2A1 LTR ERVL -45 399 1 2001 151 0 0 chr5 45369245 45369550 -157715982 - AluSx SINE Alu -7 305 1 283 306 121 40 chr5 45369752 45369876 -157715656 + L2 LINE L2 3175 3308 -5 247 255 0 0 chr5 45369961 45370012 -157715520 + (CA)n Simple_repeat Simple_repeat 2 52 0 303 256 217 31 chr5 45370718 45370847 -157714685 - MIR SINE MIR -102 160 8 338 94 19 0 chr5 45370920 45370973 -157714559 - L1PA13 LINE L1 -4570 2217 2164 521 253 230 20 chr5 45370973 45371269 -157714263 - MER31B LTR ERV1 -108 358 1 251 286 48 0 chr5 45371535 45371598 -157713934 - MIR3 SINE MIR -13 195 130 22 0 0 0 chr5 45371817 45371839 -157713693 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr5 45372018 45372060 -157713472 + AT_rich Low_complexity Low_complexity 1 42 0 5346 130 9 14 chr5 45373458 45375396 -157710136 - L1PA15 LINE L1 -13 6152 4220 774 314 51 40 chr5 45376404 45376992 -157708540 - L2 LINE L2 -126 3187 2576 2322 268 106 20 chr5 45376992 45377749 -157707783 - L2 LINE L2 -1756 1558 737 274 320 0 0 chr5 45377834 45377912 -157707620 - L2 LINE L2 -2801 513 436 350 130 58 0 chr5 45378027 45378096 -157707436 - L1PA16 LINE L1 -6 6160 6088 1252 164 2 8 chr5 45378096 45378314 -157707218 - L1MC/D LINE L1 -585 5581 5386 * 9136 199 40 19 chr5 45378308 45380052 -157705480 - L1PA16 LINE L1 -2 6164 4458 1964 116 4 4 chr5 45380052 45380327 -157705205 + AluSx SINE Alu 1 275 -37 509 44 15 0 chr5 45380331 45380399 -157705133 + (GAAA)n Simple_repeat Simple_repeat 3 71 0 9136 199 40 19 chr5 45380399 45381881 -157703651 - L1PA16 LINE L1 -1710 4456 2864 393 258 158 8 chr5 45382170 45382290 -157703242 - L2 LINE L2 0 3313 3176 369 282 43 17 chr5 45382474 45382591 -157702941 - MIR3 SINE MIR -49 159 40 221 152 43 0 chr5 45383788 45383834 -157701698 + T-rich Low_complexity Low_complexity 2 49 0 548 289 100 21 chr5 45384462 45384701 -157700831 - MIR SINE MIR -2 260 3 1762 171 61 3 chr5 45385239 45385584 -157699948 - MLT1A1 LTR MaLR 0 365 1 641 321 123 17 chr5 45386165 45386514 -157699018 + MLT1J2 LTR MaLR 58 443 -7 603 217 30 42 chr5 45386992 45387158 -157698374 + MLT1D LTR MaLR 1 164 -341 799 223 10 17 chr5 45387406 45387606 -157697926 + MLT1D LTR MaLR 208 401 -104 1268 212 111 55 chr5 45388066 45388206 -157697326 + L1ME2 LINE L1 5562 5693 -471 261 0 0 0 chr5 45388206 45388235 -157697297 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1828 117 4 18 chr5 45388240 45388521 -157697011 - AluSp SINE Alu -32 281 5 1268 212 111 55 chr5 45388521 45388851 -157696681 + L1ME2 LINE L1 5696 6065 -99 293 360 120 42 chr5 45390167 45390336 -157695196 + L3 LINE CR1 357 511 -1066 2344 127 16 24 chr5 45390336 45390714 -157694818 - THE1C LTR MaLR 0 375 1 293 360 120 42 chr5 45390714 45390952 -157694580 + L3 LINE CR1 511 796 -781 374 335 75 28 chr5 45391072 45391326 -157694206 + L3 LINE CR1 821 1086 -491 180 379 85 29 chr5 45392518 45392790 -157692742 + L2 LINE L2 2564 2850 -464 832 230 123 12 chr5 45393017 45393289 -157692243 - L1ME3A LINE L1 -282 5880 5581 1623 199 101 58 chr5 45393307 45393717 -157691815 + MLT1E2 LTR MaLR 120 511 -115 207 0 0 0 chr5 45393717 45393740 -157691792 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2067 125 0 0 chr5 45393749 45394044 -157691488 - AluSx SINE Alu -17 295 1 1623 199 101 58 chr5 45394044 45394106 -157691426 + MLT1E2 LTR MaLR 518 623 -3 569 267 67 0 chr5 45394108 45394288 -157691244 - L1ME LINE L1 -551 6013 5822 198 0 0 0 chr5 45394893 45394915 -157690617 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 1061 222 61 84 chr5 45395434 45396005 -157689527 - L1ME LINE L1 -4160 2380 1823 1144 195 158 17 chr5 45397835 45398132 -157687400 + MER2 DNA MER2_type 7 345 0 442 338 58 58 chr5 45398204 45398583 -157686949 - L1M4 LINE L1 -2162 3984 3606 1034 191 149 40 chr5 45398843 45399172 -157686360 + MLT1A1 LTR MaLR 1 365 0 1750 147 13 36 chr5 45402153 45402460 -157683072 - AluJo SINE Alu -12 300 1 2147 113 17 0 chr5 45402822 45403114 -157682418 + AluSq SINE Alu 4 300 -13 674 245 64 64 chr5 45403571 45403820 -157681712 + MIR SINE MIR 1 249 -13 1386 113 5 54 chr5 45404020 45404284 -157681248 - AluSq SINE Alu 0 327 75 189 250 45 0 chr5 45404469 45404513 -157681019 - MIR SINE MIR -118 144 99 1980 129 0 4 chr5 45405272 45405580 -157679952 - AluSc SINE Alu 0 307 1 274 324 39 29 chr5 45406781 45406883 -157678649 + L2 LINE L2 3196 3298 -15 1816 153 10 75 chr5 45407636 45408023 -157677509 + MLT1B LTR MaLR 29 390 0 185 389 0 0 chr5 45408899 45408953 -157676579 - MIR SINE MIR -156 106 53 240 35 0 0 chr5 45408970 45408999 -157676533 + (TTA)n Simple_repeat Simple_repeat 3 31 0 1499 207 66 16 chr5 45411957 45412320 -157673212 + MLT1D LTR MaLR 1 381 -124 2248 98 3 13 chr5 45412593 45412898 -157672634 - AluSg SINE Alu -8 302 1 260 223 148 94 chr5 45413060 45413200 -157672332 - LTR33A LTR ERVL 0 523 366 4431 49 16 0 chr5 45413200 45413778 -157671754 + L1PA5 LINE L1 5578 6164 0 260 223 148 94 chr5 45413778 45413838 -157671694 - LTR33A LTR ERVL -157 366 311 * 537 305 75 0 chr5 45413827 45414014 -157671518 - LTR33A LTR ERVL -316 207 7 205 241 86 0 chr5 45415638 45415696 -157669836 - L2 LINE L2 -87 3226 3164 947 211 11 79 chr5 45415710 45415990 -157669542 + MLT1B LTR MaLR 1 261 -129 533 154 0 0 chr5 45415994 45416072 -157669460 + AluJb SINE Alu 7 84 -228 13256 93 10 0 chr5 45416072 45417892 -157667640 + L1PA5 LINE L1 1 1839 -4307 10902 46 5 0 chr5 45417896 45420012 -157665520 + L1PA5 LINE L1 4021 6146 -8 1052 188 4 52 chr5 45420042 45420292 -157665240 + AluJb SINE Alu 75 312 0 657 201 60 0 chr5 45420302 45420436 -157665096 + MLT1B LTR MaLR 249 390 0 213 354 13 0 chr5 45422236 45422315 -157663217 + MIR SINE MIR 72 151 -57 21 71 0 0 chr5 45422441 45422483 -157663049 + AT_rich Low_complexity Low_complexity 1 42 0 255 290 32 58 chr5 45423082 45423237 -157662295 + L1MEd LINE L1 1100 1250 -4869 244 313 42 0 chr5 45423208 45423304 -157662228 + L1PBa LINE L1 1314 1413 -1077 * 226 259 0 0 chr5 45423392 45423446 -157662086 + L1PBa LINE L1 1690 1743 -4387 2117 103 0 58 chr5 45423660 45423971 -157661561 + AluSx SINE Alu 1 293 -19 23 0 0 0 chr5 45423974 45423997 -157661535 + AT_rich Low_complexity Low_complexity 1 23 0 1102 162 14 48 chr5 45424305 45424515 -157661017 + AluJb SINE Alu 27 229 -83 6315 28 0 0 chr5 45424656 45425407 -157660125 - L1PA3 LINE L1 -876 5270 4520 7448 24 2 6 chr5 45425407 45426287 -157659245 + L1PA3 LINE L1 5273 6155 0 2052 135 0 0 chr5 45426405 45426687 -157658845 + AluSx SINE Alu 1 282 -30 243 0 0 0 chr5 45426689 45426716 -157658816 + (TC)n Simple_repeat Simple_repeat 2 28 0 342 0 0 0 chr5 45426716 45426754 -157658778 + (CA)n Simple_repeat Simple_repeat 1 38 0 2213 112 3 3 chr5 45427363 45427675 -157657857 + AluSx SINE Alu 1 312 0 369 277 128 14 chr5 45428364 45428512 -157657020 + MIR SINE MIR 85 249 -13 743 174 30 0 chr5 45429565 45429697 -157655835 + AluJo SINE Alu 1 136 -176 269 292 5 108 chr5 45430424 45430609 -157654923 + MIR SINE MIR 69 234 -28 8619 138 19 11 chr5 45430749 45432158 -157653374 - Tigger1 DNA MER2_type -998 1420 1 383 61 0 0 chr5 45432300 45432349 -157653183 - Tigger1 DNA MER2_type -2004 414 366 296 383 0 7 chr5 45432885 45433034 -157652498 - MIR SINE MIR -49 213 66 255 31 0 0 chr5 45433063 45433095 -157652437 + (TG)n Simple_repeat Simple_repeat 2 33 0 2271 95 3 3 chr5 45435115 45435420 -157650112 + AluSc SINE Alu 2 306 -3 194 162 27 122 chr5 45435727 45435801 -157649731 - L2 LINE L2 -1280 2034 1968 370 73 0 0 chr5 45436180 45436235 -157649297 - MER73 LTR ERVL -589 55 1 1459 247 25 11 chr5 45436235 45436595 -157648937 + L1MC4 LINE L1 6691 7055 -987 637 253 118 19 chr5 45436607 45437174 -157648358 + L1MC4 LINE L1 7160 7710 -98 1712 156 75 28 chr5 45438659 45439017 -157646515 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr5 45439122 45439145 -157646387 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr5 45439565 45439592 -157645940 + AT_rich Low_complexity Low_complexity 1 27 0 874 294 124 21 chr5 45439855 45440274 -157645258 - HERV16 LTR ERVL -4131 865 404 876 240 35 143 chr5 45440652 45441136 -157644396 - LTR16A1 LTR ERVL 0 457 26 310 298 18 9 chr5 45441143 45441257 -157644275 + MER94 DNA DNA 20 134 0 337 175 194 0 chr5 45442240 45442291 -157643241 - L1MA10 LINE L1 -8 6326 6276 428 231 36 98 chr5 45442291 45442568 -157642964 - L1ME1 LINE L1 -67 6099 5840 26 50 0 0 chr5 45442701 45442741 -157642791 + AT_rich Low_complexity Low_complexity 1 40 0 1197 227 14 15 chr5 45442844 45443313 -157642219 + L1ME LINE L1 5077 5545 -621 434 351 105 61 chr5 45443853 45444652 -157640880 + L2 LINE L2 2430 3272 0 1820 152 71 0 chr5 45444826 45445149 -157640383 + MER7A DNA MER2_type 2 345 -1 352 276 68 23 chr5 45446370 45446591 -157638941 - L1MA8 LINE L1 -4 6287 6057 2155 120 0 13 chr5 45447312 45447628 -157637904 + AluSx SINE Alu 1 312 0 249 279 110 55 chr5 45447653 45447961 -157637571 + L1MEd LINE L1 930 1254 -4865 2297 128 19 3 chr5 45448141 45448488 -157637044 - L1PB1 LINE L1 -5 6146 5791 267 31 0 0 chr5 45448488 45448520 -157637012 + (TG)n Simple_repeat Simple_repeat 2 33 0 2297 128 19 3 chr5 45448520 45448531 -157637001 - L1PB1 LINE L1 -360 5791 5782 214 200 0 29 chr5 45448531 45448601 -157636931 + (TA)n Simple_repeat Simple_repeat 1 68 0 2434 105 20 26 chr5 45448601 45448709 -157636823 - L1PB1 LINE L1 -360 5791 5684 1982 132 66 33 chr5 45448709 45449072 -157636460 - THE1C LTR MaLR 0 375 1 2434 105 20 26 chr5 45449072 45449354 -157636178 - L1PB1 LINE L1 -467 5684 5403 187 430 20 7 chr5 45450028 45450177 -157635355 - L2 LINE L2 -188 3084 2934 21 36 0 0 chr5 45450244 45450272 -157635260 + AT_rich Low_complexity Low_complexity 1 28 0 187 313 31 0 chr5 45450300 45450364 -157635168 + L3b LINE CR1 1429 1494 -89 959 197 138 84 chr5 45450410 45450780 -157634752 - MLT1B LTR MaLR 0 390 1 30 77 0 0 chr5 45451581 45451646 -157633886 + AT_rich Low_complexity Low_complexity 1 65 0 491 227 153 7 chr5 45452202 45452352 -157633180 + Charlie1 DNA MER1_type 7 178 -2583 * 1799 222 32 7 chr5 45452346 45452783 -157632749 + Charlie1 DNA MER1_type 2055 2502 -259 25 31 0 0 chr5 45453106 45453138 -157632394 + AT_rich Low_complexity Low_complexity 1 32 0 1960 107 64 4 chr5 45453229 45453510 -157632022 - AluSq SINE Alu -15 298 1 185 308 0 55 chr5 45455357 45455448 -157630084 + L2 LINE L2 2932 3017 -255 2257 100 3 0 chr5 45455810 45456110 -157629422 + AluSc SINE Alu 1 301 -8 193 238 24 0 chr5 45456274 45456316 -157629216 - MIR3 SINE MIR -50 158 116 183 42 0 0 chr5 45456389 45456413 -157629119 + (CA)n Simple_repeat Simple_repeat 2 25 0 2316 102 7 0 chr5 45458215 45458520 -157627012 + AluSx SINE Alu 1 307 -5 441 0 0 0 chr5 45458565 45458614 -157626918 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 233 221 0 128 chr5 45458974 45459060 -157626472 - MIR SINE MIR -118 144 70 219 69 0 0 chr5 45459133 45459162 -157626370 + (CA)n Simple_repeat Simple_repeat 2 30 0 287 271 0 0 chr5 45459322 45459392 -157626140 + MER112 DNA MER1_type 179 248 -12 868 250 18 5 chr5 45459587 45459811 -157625721 + L1PA10 LINE L1 9 235 -5640 4655 220 1 32 chr5 45459812 45461035 -157624497 + L1PA10 LINE L1 356 2326 -4135 18361 144 7 13 chr5 45461035 45464952 -157620580 + L1PA10 LINE L1 2528 6482 -1 2441 123 17 3 chr5 45465496 45465855 -157619677 + THE1B LTR MaLR 1 364 0 183 129 0 0 chr5 45465895 45465926 -157619606 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr5 45465926 45465955 -157619577 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr5 45466805 45466828 -157618704 + AT_rich Low_complexity Low_complexity 1 23 0 228 237 15 30 chr5 45467167 45467298 -157618234 + (TA)n Simple_repeat Simple_repeat 1 129 0 1129 181 157 35 chr5 45468351 45468701 -157616831 + MSTB LTR MaLR 22 426 0 236 340 113 16 chr5 45469265 45469450 -157616082 + L2 LINE L2 2554 2756 -558 * 979 265 13 4 chr5 45469449 45469679 -157615853 - MIR SINE MIR -29 233 2 727 361 89 11 chr5 45469679 45470186 -157615346 + L2 LINE L2 2722 3269 -44 28 0 0 0 chr5 45470204 45470232 -157615300 + AT_rich Low_complexity Low_complexity 1 28 0 26 74 0 0 chr5 45470283 45470337 -157615195 + AT_rich Low_complexity Low_complexity 1 54 0 396 273 224 0 chr5 45471248 45471391 -157614141 + MER5A DNA MER1_type 9 183 -6 660 299 80 34 chr5 45472276 45472510 -157613022 - MLT1I LTR MaLR -19 390 135 294 29 0 0 chr5 45472510 45472545 -157612987 + (TA)n Simple_repeat Simple_repeat 1 35 0 660 299 80 34 chr5 45472545 45472634 -157612898 - MLT1I LTR MaLR -274 135 52 233 397 30 15 chr5 45473567 45473698 -157611834 + MIR3 SINE MIR 40 172 -36 2401 87 0 3 chr5 45476403 45476714 -157608818 - AluY SINE Alu -1 310 1 1685 239 117 46 chr5 45477944 45478621 -157606911 + MER50 LTR ERV1 10 734 0 299 256 105 0 chr5 45480025 45480111 -157605421 + MLT1I LTR MaLR 311 405 -4 346 341 49 40 chr5 45480208 45480431 -157605101 - L2 LINE L2 -19 3253 3029 284 113 75 0 chr5 45480432 45480485 -157605047 - MLT2A1 LTR ERVL 0 444 388 341 155 54 0 chr5 45480488 45480617 -157604915 + (TA)n Simple_repeat Simple_repeat 1 136 0 2596 89 45 11 chr5 45480619 45481000 -157604532 - MLT2A1 LTR ERVL -48 396 3 19737 79 8 5 chr5 45481002 45484716 -157600816 - HERVL-A1 LTR ERVL 0 5654 1868 327 108 50 36 chr5 45484716 45484855 -157600677 + (TA)n Simple_repeat Simple_repeat 1 141 0 272 192 62 27 chr5 45484857 45485003 -157600529 + (TATAA)n Simple_repeat Simple_repeat 2 152 0 359 124 65 20 chr5 45485003 45485156 -157600376 + (TA)n Simple_repeat Simple_repeat 2 161 0 2522 118 46 8 chr5 45485156 45485545 -157599987 - MLT2A1 LTR ERVL -40 404 1 327 304 0 36 chr5 45485856 45485968 -157599564 + MER5A DNA MER1_type 69 176 -13 2449 104 30 3 chr5 45486241 45486606 -157598926 - THE1C LTR MaLR 0 375 1 2253 158 54 15 chr5 45488242 45488652 -157596880 + MSTB LTR MaLR 1 426 0 1900 187 0 3 chr5 45488652 45488999 -157596533 + MSTB-int LTR MaLR 1 346 -1305 1392 107 0 0 chr5 45489001 45489198 -157596334 + MER107 DNA MER1_type 1 197 0 6833 195 22 15 chr5 45489199 45489252 -157596280 + MSTB-int LTR MaLR 349 400 -1251 2162 113 0 3 chr5 45489252 45489536 -157595996 + AluSq SINE Alu 13 295 -18 6833 195 22 15 chr5 45489536 45490770 -157594762 + MSTB-int LTR MaLR 400 1645 -6 2254 189 19 12 chr5 45490776 45491199 -157594333 + MSTB LTR MaLR 1 426 0 14430 145 29 18 chr5 45492305 45494753 -157590779 + Tigger2 DNA MER2_type 1 2474 -244 353 273 47 16 chr5 45496119 45496247 -157589285 - LTR33A LTR ERVL 0 523 392 312 269 52 45 chr5 45496533 45496667 -157588865 - LTR50 LTR ERVL -636 159 25 2335 80 0 3 chr5 45496768 45497079 -157588453 - AluY SINE Alu -1 310 1 2406 112 60 5 chr5 45498597 45498980 -157586552 + MLT2A1 LTR ERVL 1 404 -40 316 211 105 0 chr5 45498981 45499057 -157586475 - L1MC4 LINE L1 -1350 6692 6609 218 59 78 20 chr5 45499057 45499108 -157586424 + (TA)n Simple_repeat Simple_repeat 1 54 0 583 115 29 23 chr5 45499111 45499285 -157586247 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 446 140 10 30 chr5 45499288 45499388 -157586144 + (TA)n Simple_repeat Simple_repeat 2 99 0 42 58 0 29 chr5 45500106 45500209 -157585323 + AT_rich Low_complexity Low_complexity 1 100 0 763 53 18 44 chr5 45500945 45501059 -157584473 + AluY SINE Alu 96 206 -105 667 296 83 37 chr5 45502009 45502243 -157583289 - MLT1I LTR MaLR -19 390 135 603 0 0 0 chr5 45502243 45502310 -157583222 + (TA)n Simple_repeat Simple_repeat 2 68 0 667 296 83 37 chr5 45502310 45502399 -157583133 - MLT1I LTR MaLR -274 135 52 1457 181 70 24 chr5 45502785 45503083 -157582449 + MER2 DNA MER2_type 34 345 0 231 208 0 0 chr5 45503083 45503128 -157582404 + MLT2B1 LTR ERVL 474 518 -2 2461 225 31 54 chr5 45503133 45503805 -157581727 + MLT-int LTR MaLR 2 658 -1077 463 299 7 29 chr5 45503899 45504036 -157581496 + MLT-int LTR MaLR 1303 1436 -299 2788 163 29 36 chr5 45504036 45504624 -157580908 - L1PB4 LINE L1 -1 6155 5572 1177 184 33 8 chr5 45504632 45504991 -157580541 - L1PB4 LINE L1 -748 5398 5083 * 1522 197 11 4 chr5 45504985 45505264 -157580268 + MLT1A1-int LTR MaLR 1448 1728 -7 1295 204 12 23 chr5 45505316 45505631 -157579901 + MLT1A1 LTR MaLR 21 365 0 234 334 14 24 chr5 45505645 45505744 -157579788 + MER5A DNA MER1_type 74 172 -6 309 291 82 51 chr5 45506081 45506239 -157579293 - L1ME4a LINE L1 -197 5924 5762 256 330 62 6 chr5 45506301 45506477 -157579055 + L1M4 LINE L1 5368 5553 -625 253 273 27 27 chr5 45506934 45507044 -157578488 - HAL1 LINE L1 -145 2362 2253 439 319 77 93 chr5 45509184 45510142 -157575390 - L2 LINE L2 -1480 1834 892 330 310 121 0 chr5 45511215 45511331 -157574201 - L2 LINE L2 0 3313 3184 260 284 26 116 chr5 45511400 45511478 -157574054 - MIR SINE MIR -59 203 120 1465 178 75 0 chr5 45511478 45511759 -157573773 + AluJo SINE Alu 1 302 0 260 284 26 116 chr5 45511759 45511870 -157573662 - MIR SINE MIR -142 120 31 194 327 53 44 chr5 45513181 45513294 -157572238 - MIR3 SINE MIR -26 182 69 297 197 0 33 chr5 45513480 45513541 -157571991 - MIR3 SINE MIR -49 159 101 220 292 216 18 chr5 45513917 45514088 -157571444 + L2 LINE L2 2434 2638 -676 337 242 75 33 chr5 45514863 45514983 -157570549 + MIR SINE MIR 9 133 -129 440 315 183 0 chr5 45515007 45515220 -157570312 - MIR SINE MIR -2 260 9 1535 167 36 42 chr5 45515347 45515653 -157569879 + AluJb SINE Alu 1 304 -8 193 250 16 31 chr5 45515878 45515942 -157569590 - MIR SINE MIR -93 169 107 2140 241 70 42 chr5 45517396 45518035 -157567497 + MER21B LTR ERV1 147 803 -60 235 238 36 36 chr5 45518717 45518801 -157566731 + GA-rich Low_complexity Low_complexity 3 86 0 189 303 0 30 chr5 45518855 45518921 -157566611 - MIR SINE MIR -100 162 99 206 333 12 37 chr5 45519430 45519511 -157566021 - L2 LINE L2 -1 3312 3234 3802 105 52 12 chr5 45519882 45520475 -157565057 - L1PB1 LINE L1 -1 6150 5534 11576 232 49 32 chr5 45520475 45521321 -157564211 - L1M2 LINE L1 -655 5721 4891 275 64 0 21 chr5 45521321 45521368 -157564164 + (TA)n Simple_repeat Simple_repeat 2 47 0 11576 232 49 32 chr5 45521368 45522573 -157562959 - L1M2 LINE L1 -1485 4891 3708 2191 85 0 3 chr5 45522573 45522855 -157562677 - AluY SINE Alu -11 300 20 11576 232 49 32 chr5 45522855 45523783 -157561749 - L1M2 LINE L1 -2668 3708 2797 1828 135 40 0 chr5 45523783 45524057 -157561475 + AluSq SINE Alu 2 286 -27 333 0 0 0 chr5 45524061 45524098 -157561434 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 11576 232 49 32 chr5 45524098 45526927 -157558605 - L1M2 LINE L1 -3581 2795 14 208 213 43 21 chr5 45526963 45527010 -157558522 + MIR3 SINE MIR 116 163 -45 * 408 326 74 37 chr5 45527007 45527249 -157558283 - MIR SINE MIR 0 262 12 25 65 0 0 chr5 45528006 45528052 -157557480 + AT_rich Low_complexity Low_complexity 1 46 0 1986 233 52 22 chr5 45528389 45528891 -157556641 - LTR53 LTR ERVL -2 517 1 23 33 0 0 chr5 45529000 45529030 -157556502 + AT_rich Low_complexity Low_complexity 1 30 0 9505 40 1 70 chr5 45529113 45530631 -157554901 - L1PA5 LINE L1 -607 5547 4135 4980 39 0 0 chr5 45530631 45531222 -157554310 + L1PA5 LINE L1 5560 6151 -3 1358 271 95 45 chr5 45531937 45532026 -157553506 + L1ME LINE L1 1315 1398 -4998 189 74 0 0 chr5 45532026 45532053 -157553479 + (CA)n Simple_repeat Simple_repeat 2 28 0 1358 271 95 45 chr5 45532053 45532869 -157552663 + L1ME LINE L1 1398 2281 -4115 1995 106 3 11 chr5 45532869 45533189 -157552343 + AluSc SINE Alu 2 319 0 1358 271 95 45 chr5 45533189 45533315 -157552217 + L1ME LINE L1 2281 2399 -3997 * 1835 269 67 12 chr5 45533307 45533575 -157551957 + L1ME LINE L1 2301 2553 -3662 312 27 0 0 chr5 45533575 45533612 -157551920 + (CA)n Simple_repeat Simple_repeat 2 38 0 1835 269 67 12 chr5 45533612 45534076 -157551456 + L1ME LINE L1 2553 3073 -3142 861 69 9 0 chr5 45534079 45534226 -157551306 + AluY SINE Alu 175 322 0 323 291 24 20 chr5 45534227 45534478 -157551054 + L1ME LINE L1 3076 3327 -2888 1115 231 62 52 chr5 45534652 45535038 -157550494 + MLT1B LTR MaLR 1 390 0 3114 198 53 4 chr5 45535038 45535721 -157549811 + MLT1B-int LTR MaLR 1 716 -655 744 224 149 13 chr5 45536086 45536400 -157549132 + MLT1B-int LTR MaLR 1308 1735 0 1396 197 39 75 chr5 45536400 45536795 -157548737 + MLT1B LTR MaLR 1 365 0 851 230 22 55 chr5 45536795 45537069 -157548463 + L1ME LINE L1 4584 4848 -1367 943 450 54 9 chr5 45537070 45537403 -157548129 - MLT1A1 LTR MaLR -1 364 17 1652 239 61 76 chr5 45537417 45538471 -157547061 + L1ME LINE L1 4846 5888 -347 * 4106 166 18 6 chr5 45538467 45539602 -157545930 - L1PA16 LINE L1 -248 5918 4773 1417 206 64 87 chr5 45539602 45540073 -157545459 - MER66A LTR ERV1 0 478 97 3526 221 17 14 chr5 45540140 45541025 -157544507 - L1 LINE L1 -1371 4775 3888 1937 143 29 0 chr5 45541025 45541305 -157544227 - AluSx SINE Alu -24 288 1 2162 96 16 3 chr5 45541316 45541619 -157543913 - AluY SINE Alu -4 307 1 1404 250 26 11 chr5 45541629 45542097 -157543435 - L1PA16 LINE L1 -2547 3599 3125 1309 177 69 134 chr5 45542776 45542931 -157542601 + MSTD LTR MaLR 6 169 -227 2081 123 0 0 chr5 45542931 45543231 -157542301 + AluSg1 SINE Alu 1 300 -9 1309 177 69 134 chr5 45543231 45543493 -157542039 + MSTD LTR MaLR 169 396 0 279 305 39 29 chr5 45543640 45543777 -157541755 - MIR SINE MIR -13 195 58 182 62 31 0 chr5 45543903 45543935 -157541597 + (TTTTTG)n Simple_repeat Simple_repeat 1 33 0 1213 188 58 0 chr5 45544223 45544446 -157541086 + MER46A DNA MER2_type 1 236 0 2905 83 76 102 chr5 45544644 45545172 -157540360 - THE1B-int LTR MaLR -1066 514 1 2280 137 14 14 chr5 45545172 45545536 -157539996 - THE1B LTR MaLR 0 364 1 352 122 171 6 chr5 45545640 45545743 -157539789 - L1MA8 LINE L1 -81 6231 6113 * 447 135 153 5 chr5 45545741 45545847 -157539685 + L1MA8 LINE L1 6180 6286 -5 870 257 101 3 chr5 45545877 45546165 -157539367 - Charlie1 DNA MER1_type -268 2493 2178 333 47 0 0 chr5 45546167 45546210 -157539322 + (CA)n Simple_repeat Simple_repeat 2 44 0 246 211 11 95 chr5 45546295 45546390 -157539142 - MER112 DNA MER1_type -173 87 1 30 0 0 0 chr5 45546448 45546478 -157539054 + AT_rich Low_complexity Low_complexity 1 30 0 274 290 186 8 chr5 45546497 45546621 -157538911 + MLT1J2 LTR MaLR 1 146 -304 282 187 41 6 chr5 45546647 45546799 -157538733 + CT-rich Low_complexity Low_complexity 1 157 0 384 276 99 11 chr5 45547049 45547230 -157538302 + L1ME3A LINE L1 5767 5963 -207 715 163 0 57 chr5 45548093 45548234 -157537298 + AluJo/FLAM SINE Alu 1 133 -169 295 163 0 0 chr5 45548234 45548283 -157537249 + AluSg/x SINE Alu 136 184 -118 1249 135 14 24 chr5 45548287 45548495 -157537037 + AluSp SINE Alu 101 306 -7 279 0 0 0 chr5 45548495 45548526 -157537006 + (GA)n Simple_repeat Simple_repeat 1 31 0 369 43 0 0 chr5 45548537 45548584 -157536948 + (AATAG)n Simple_repeat Simple_repeat 1 47 0 414 142 43 21 chr5 45548640 45548693 -157536839 + GA-rich Low_complexity Low_complexity 2 52 -93 225 0 0 0 chr5 45548693 45548718 -157536814 + (TG)n Simple_repeat Simple_repeat 1 25 0 414 142 43 21 chr5 45548718 45548805 -157536727 + GA-rich Low_complexity Low_complexity 52 145 0 23 33 0 0 chr5 45549374 45549404 -157536128 + AT_rich Low_complexity Low_complexity 1 30 0 253 113 0 38 chr5 45549493 45549546 -157535986 + (GAA)n Simple_repeat Simple_repeat 1 51 0 229 255 184 0 chr5 45549567 45549665 -157535867 - MIR SINE MIR -24 238 123 453 19 0 0 chr5 45549788 45549842 -157535690 + (CA)n Simple_repeat Simple_repeat 2 55 0 244 263 13 39 chr5 45549991 45550082 -157535450 - MER5A DNA MER1_type -11 178 79 203 239 0 60 chr5 45550252 45550319 -157535213 - L2 LINE L2 -1 3271 3209 258 323 70 38 chr5 45550506 45550664 -157534868 - MIR SINE MIR -36 226 64 1137 117 6 6 chr5 45551255 45551435 -157534097 - L1MA3 LINE L1 -468 5837 5658 1729 184 0 25 chr5 45551871 45552191 -157533341 + AluJb SINE Alu 1 312 0 198 354 30 56 chr5 45553313 45553511 -157532021 - L2 LINE L2 -553 2761 2569 182 353 163 32 chr5 45554183 45554983 -157530549 - L2 LINE L2 -849 2465 1562 1266 234 21 14 chr5 45555702 45556038 -157529494 + MSTD LTR MaLR 1 395 -1 284 306 82 41 chr5 45556334 45556481 -157529051 - MIR SINE MIR -41 221 69 1408 122 10 5 chr5 45556534 45556739 -157528793 - AluSc SINE Alu -7 302 97 400 335 141 15 chr5 45557228 45557434 -157528098 + MIR SINE MIR 26 257 -5 1712 230 71 9 chr5 45558661 45559096 -157526436 - MLT1C LTR MaLR 0 467 6 218 321 37 0 chr5 45559099 45559180 -157526352 + MIR SINE MIR 176 259 -3 430 152 0 25 chr5 45559948 45560027 -157525505 + L1MB1 LINE L1 5798 5874 -294 195 100 0 0 chr5 45560284 45560314 -157525218 + (T)n Simple_repeat Simple_repeat 1 30 0 1853 199 58 12 chr5 45560706 45561118 -157524414 + MSTB1 LTR MaLR 1 431 -1 26 0 0 0 chr5 45561188 45561214 -157524318 + AT_rich Low_complexity Low_complexity 1 26 0 4534 109 11 48 chr5 45563418 45564132 -157521400 + LTR12 LTR ERV1 1 688 0 23 54 0 0 chr5 45564252 45564289 -157521243 + AT_rich Low_complexity Low_complexity 1 37 0 1225 78 0 6 chr5 45564452 45564618 -157520914 + L1PA4 LINE L1 5970 6134 -21 1051 31 0 0 chr5 45565507 45565634 -157519898 - L1PA5 LINE L1 0 6154 6028 247 241 19 0 chr5 45565820 45565874 -157519658 - MER5B DNA MER1_type -1 177 123 688 213 119 0 chr5 45565880 45566040 -157519492 + MLT2B1 LTR ERVL 1 179 -341 717 216 11 60 chr5 45566253 45566438 -157519094 + MER5B DNA MER1_type 3 178 0 205 414 0 0 chr5 45566440 45566527 -157519005 - MIR3 SINE MIR -50 158 72 304 281 65 54 chr5 45566926 45567111 -157518421 + LTR16C LTR ERVL 305 491 0 536 335 89 58 chr5 45568000 45568456 -157517076 - L2 LINE L2 -1 3312 2840 2268 101 3 0 chr5 45568456 45568752 -157516780 + AluSq SINE Alu 3 299 -14 536 335 89 58 chr5 45568752 45568928 -157516604 - L2 LINE L2 -473 2840 2671 840 228 140 19 chr5 45568992 45569299 -157516233 - LTR37A LTR ERV1 -50 376 33 2887 116 16 5 chr5 45570047 45570496 -157515036 + L1PA13 LINE L1 5708 6161 -2 1261 237 124 41 chr5 45572183 45572453 -157513079 + MLT2F LTR ERVL 1 247 -416 504 0 0 0 chr5 45572453 45572509 -157513023 + (TG)n Simple_repeat Simple_repeat 2 57 0 1261 237 124 41 chr5 45572509 45572758 -157512774 + MLT2F LTR ERVL 247 609 -54 230 224 0 0 chr5 45572801 45572850 -157512682 + MLT2F LTR ERVL 615 663 0 832 243 79 16 chr5 45573574 45573879 -157511653 - MER33 DNA MER1_type 0 324 1 392 333 43 29 chr5 45574668 45574802 -157510730 - MIR SINE MIR -1 261 121 2345 100 0 0 chr5 45574802 45575102 -157510430 + AluSg SINE Alu 1 300 -10 392 333 43 29 chr5 45575102 45575174 -157510358 - MIR SINE MIR -141 121 52 1236 207 73 50 chr5 45575313 45575670 -157509862 - MLT1A1 LTR MaLR 0 365 1 450 258 65 38 chr5 45575697 45575883 -157509649 + MLT1J LTR MaLR 68 258 -253 207 273 55 0 chr5 45576040 45576095 -157509437 - MIR SINE MIR -87 175 118 180 317 50 0 chr5 45576646 45576706 -157508826 + L3 LINE CR1 1403 1465 -112 346 339 81 6 chr5 45577241 45577415 -157508117 - MIR SINE MIR -56 206 20 630 102 0 0 chr5 45578417 45578505 -157507027 + AluSg SINE Alu 1 88 -222 603 335 50 48 chr5 45579165 45579695 -157505837 + L2 LINE L2 2726 3258 -55 350 183 158 24 chr5 45579708 45579790 -157505742 + MSTD LTR MaLR 1 93 -335 832 206 146 73 chr5 45579969 45580216 -157505316 + MSTD LTR MaLR 108 394 -2 6932 220 68 32 chr5 45580218 45581893 -157503639 + MSTD-int LTR MaLR 1 1735 0 865 217 48 14 chr5 45581919 45582186 -157503346 + MSTD LTR MaLR 76 383 -5 237 257 54 27 chr5 45583976 45584050 -157501482 + MER81 DNA DNA 39 114 0 200 329 112 7 chr5 45584210 45584362 -157501170 - MIR SINE MIR -11 251 84 2306 66 0 60 chr5 45585018 45585335 -157500197 - AluSx SINE Alu -14 298 1 588 273 169 43 chr5 45586032 45586358 -157499174 + MLT1J2 LTR MaLR 69 435 -15 403 357 126 36 chr5 45586510 45586843 -157498689 + L2 LINE L2 2906 3268 -4 1655 214 43 0 chr5 45587145 45587495 -157498037 + MLT1A1 LTR MaLR 1 365 0 2332 234 70 19 chr5 45588042 45588252 -157497280 - MLT1F1 LTR MaLR 0 567 369 2322 229 33 52 chr5 45588252 45588951 -157496581 - MER76 LTR ERV -2 686 1 2332 234 70 19 chr5 45588951 45589279 -157496253 - MLT1F1 LTR MaLR -198 369 1 280 337 56 0 chr5 45590372 45590461 -157495071 + L2 LINE L2 3137 3230 -42 24 0 0 0 chr5 45590684 45590708 -157494824 + AT_rich Low_complexity Low_complexity 1 24 0 310 293 141 54 chr5 45590783 45591025 -157494507 - L2 LINE L2 -36 3277 3015 1138 142 0 12 chr5 45591219 45591388 -157494144 - FRAM SINE Alu -11 165 1 253 274 39 49 chr5 45591589 45591691 -157493841 + L1MDa LINE L1 130 230 -6310 2074 239 44 53 chr5 45592118 45592144 -157493388 + L1MDa LINE L1 861 886 -5657 1523 221 29 32 chr5 45592144 45592519 -157493013 - MLT1A2 LTR MaLR 0 374 1 2074 239 44 53 chr5 45592519 45592910 -157492622 + L1MDa LINE L1 886 1272 -5271 270 0 0 0 chr5 45592910 45592940 -157492592 + (TA)n Simple_repeat Simple_repeat 1 30 0 2074 239 44 53 chr5 45592940 45593223 -157492309 + L1MDa LINE L1 1272 1556 -4987 4513 177 38 9 chr5 45593259 45593558 -157491974 + L1MB3 LINE L1 5167 5456 -727 180 0 0 0 chr5 45593558 45593578 -157491954 + (CA)n Simple_repeat Simple_repeat 1 20 0 4513 177 38 9 chr5 45593578 45594254 -157491278 + L1MB3 LINE L1 5456 6172 -11 2811 250 85 16 chr5 45594273 45595650 -157489882 + L1MDa LINE L1 1585 3055 -3485 1039 98 35 29 chr5 45595650 45595823 -157489709 + L1MA1 LINE L1 5881 6054 -248 231 281 0 0 chr5 45595818 45595875 -157489657 + L1MDa LINE L1 3088 3144 -3396 * 816 261 19 0 chr5 45595915 45596126 -157489406 + L1MDa LINE L1 4404 4618 -1922 807 235 166 11 chr5 45596120 45596221 -157489311 - L1MD2 LINE L1 -104 6255 6171 * 192 40 0 0 chr5 45596221 45596246 -157489286 + (TG)n Simple_repeat Simple_repeat 2 26 0 807 235 166 11 chr5 45596246 45596421 -157489111 - L1MD2 LINE L1 -188 6171 5936 495 108 14 5 chr5 45596421 45596559 -157488973 + MER4A-int LTR ERV1 603 807 -5791 360 43 0 0 chr5 45596576 45596622 -157488910 + (CA)n Simple_repeat Simple_repeat 1 46 0 269 189 0 38 chr5 45596691 45596744 -157488788 + LTR49 LTR ERV1 263 313 -282 6448 110 34 48 chr5 45596744 45597903 -157487629 + MER4A-int LTR ERV1 503 1448 -3567 1972 148 0 7 chr5 45597903 45598206 -157487326 - AluSq SINE Alu -11 302 2 6448 110 34 48 chr5 45598206 45598406 -157487126 + MER4A-int LTR ERV1 1448 1649 -3366 1227 153 127 0 chr5 45598407 45598635 -157486897 - LTR8 LTR ERV1 -434 257 1 3605 114 85 17 chr5 45598635 45599147 -157486385 + MER4A-int LTR ERV1 2737 3416 -3182 198 71 0 0 chr5 45599147 45599175 -157486357 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3605 114 85 17 chr5 45599175 45599466 -157486066 + MER4A-int LTR ERV1 3416 3686 -2912 * 15660 110 59 19 chr5 45599460 45600245 -157485287 + MER4A-int LTR ERV1 3837 4589 -2009 2333 82 7 0 chr5 45600245 45600537 -157484995 - AluY SINE Alu -15 296 3 15660 110 59 19 chr5 45600537 45602406 -157483126 + MER4A-int LTR ERV1 4589 6596 -2 525 153 20 20 chr5 45602410 45602508 -157483024 + MER4A LTR ERV1 1 98 -566 1682 139 11 78 chr5 45602508 45602878 -157482654 + MER4A LTR ERV1 261 664 0 201 365 84 28 chr5 45602931 45603180 -157482352 - L2 LINE L2 -1022 2292 2030 454 250 109 68 chr5 45603769 45604017 -157481515 - MIR SINE MIR -1 261 4 899 269 150 37 chr5 45604841 45605302 -157480230 - LTR33A LTR ERVL -9 514 2 224 239 0 0 chr5 45606073 45606119 -157479413 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 893 291 12 53 chr5 45606129 45606448 -157479084 - MER93a LTR ERV1 -4 398 93 23 33 0 0 chr5 45606625 45606655 -157478877 + AT_rich Low_complexity Low_complexity 1 30 0 283 266 74 35 chr5 45606657 45606860 -157478672 - L1ME LINE L1 -297 5824 5614 293 315 85 12 chr5 45606984 45607149 -157478383 - MLT1I LTR MaLR -199 210 34 2437 171 32 45 chr5 45608291 45608852 -157476680 + MER41A LTR ERV1 1 554 0 250 296 0 34 chr5 45609058 45609146 -157476386 + A-rich Low_complexity Low_complexity 1 85 0 1281 248 118 25 chr5 45610233 45610260 -157475272 + L1M4 LINE L1 3563 3586 -2560 2454 60 0 17 chr5 45610260 45610560 -157474972 - AluY SINE Alu -16 295 1 1281 248 118 25 chr5 45610560 45611226 -157474306 + L1M4 LINE L1 3586 4321 -1825 284 77 0 0 chr5 45611227 45611266 -157474266 - Alu SINE Alu -264 39 1 3451 184 24 42 chr5 45611689 45612477 -157473055 + LTR1 LTR ERV1 12 785 0 7160 89 8 19 chr5 45612554 45613622 -157471910 + MER11C LTR ERVK 1 1057 -14 48527 86 10 2 chr5 45613661 45620376 -157465156 + HERVK11 LTR ERVK 1 6765 -1188 7742 58 0 2 chr5 45620363 45621362 -157464170 + HERVK11 LTR ERVK 6957 7953 0 * 7414 88 5 9 chr5 45621362 45622424 -157463108 + MER11C LTR ERVK 1 1057 -14 943 206 150 14 chr5 45622474 45622760 -157462772 + LTR36 LTR ERV1 54 378 -233 297 322 84 30 chr5 45622785 45622987 -157462545 + MIR SINE MIR 2 214 -48 309 89 0 0 chr5 45623334 45623379 -157462153 + (CA)n Simple_repeat Simple_repeat 2 46 0 951 225 151 73 chr5 45623379 45623842 -157461690 + MLT1D LTR MaLR 2 500 -5 396 0 0 0 chr5 45623842 45623886 -157461646 + (CA)n Simple_repeat Simple_repeat 2 45 0 228 35 0 0 chr5 45623885 45623914 -157461618 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 204 67 0 0 chr5 45623913 45623943 -157461589 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 2719 13 0 10 chr5 45624581 45624887 -157460645 + AluYa5 SINE Alu 1 303 -8 361 332 40 35 chr5 45625315 45625541 -157459991 + MIR SINE MIR 23 249 -13 939 203 14 48 chr5 45625783 45626037 -157459495 - MLT1A2 LTR MaLR -3 502 131 415 137 0 0 chr5 45626048 45626121 -157459411 - MER4E LTR ERV1 0 779 707 3158 135 37 0 chr5 45626151 45626743 -157458789 - MER4B LTR ERV1 0 779 1 13002 119 25 33 chr5 45626743 45628076 -157457456 - MER4B-int LTR ERV1 0 6758 5415 2774 13 0 0 chr5 45628076 45628378 -157457154 + AluY SINE Alu 1 302 -9 13002 119 25 33 chr5 45628378 45629854 -157455678 - MER4B-int LTR ERV1 -1343 5415 3883 1257 158 8 22 chr5 45629854 45630343 -157455189 + MER4A LTR ERV1 1 550 -114 452 238 113 19 chr5 45630343 45630503 -157455029 + LTR28 LTR ERV1 1 175 -845 230 268 14 0 chr5 45630530 45630601 -157454931 + LTR1 LTR ERV1 119 190 -595 * 1880 199 130 18 chr5 45630568 45631138 -157454394 + LTR28 LTR ERV1 298 1010 -10 2454 204 82 79 chr5 45631150 45632046 -157453486 + LTR28-int LTR ERV1 2 4061 -1156 306 153 0 34 chr5 45632046 45632105 -157453427 + LTR28 LTR ERV1 964 1020 0 * 809 99 0 0 chr5 45632105 45632215 -157453317 + MER4B LTR ERV1 492 601 -9 6400 138 32 7 chr5 45632218 45633356 -157452176 - MER4B-int LTR ERV1 -2864 3894 2729 355 118 0 0 chr5 45633356 45633407 -157452125 + MER30 DNA MER1_type 1 51 -179 771 146 0 0 chr5 45633407 45633537 -157451995 + (GAA)n Simple_repeat Simple_repeat 1 130 0 720 142 179 0 chr5 45633539 45633701 -157451831 + MER30 DNA MER1_type 39 229 -1 4924 130 16 39 chr5 45633702 45634735 -157450797 - MER4B-int LTR ERV1 -4026 2732 1723 28098 122 14 57 chr5 45634735 45641159 -157444373 - L1PA7 LINE L1 -4 6150 12 3770 149 50 72 chr5 45641175 45642335 -157443197 - MER4B-int LTR ERV1 -5324 1434 492 1584 131 50 28 chr5 45642332 45642615 -157442917 - MER4B-int LTR ERV1 -6469 289 1 * 3047 144 39 2 chr5 45642615 45643205 -157442327 - MER4B LTR ERV1 0 779 3 492 206 0 0 chr5 45643206 45643298 -157442234 - MLT1A2 LTR MaLR -279 95 4 207 302 38 36 chr5 45644423 45644506 -157441026 + MIR SINE MIR 74 155 -58 242 56 28 0 chr5 45644553 45644589 -157440943 + (TAGA)n Simple_repeat Simple_repeat 3 39 0 367 355 59 0 chr5 45645020 45645189 -157440343 + MIR SINE MIR 84 262 0 525 288 28 33 chr5 45646547 45646759 -157438773 + MER20 DNA MER1_type 5 215 -4 536 197 23 0 chr5 45647075 45647207 -157438325 + CT-rich Low_complexity Low_complexity 5 139 0 784 184 0 29 chr5 45647238 45647374 -157438158 - FLAM_C SINE Alu 0 133 2 674 201 7 0 chr5 45648020 45648159 -157437373 - L1 LINE L1 -950 5196 5057 28 91 0 0 chr5 45649133 45649210 -157436322 + AT_rich Low_complexity Low_complexity 1 77 0 21 36 0 0 chr5 45649778 45649806 -157435726 + AT_rich Low_complexity Low_complexity 1 28 0 508 293 6 12 chr5 45653466 45653633 -157431899 - MER63A DNA MER1_type -1 209 44 327 174 452 9 chr5 45653801 45653916 -157431616 + MER5A DNA MER1_type 17 182 -7 2607 62 0 0 chr5 45653939 45654247 -157431285 - AluY SINE Alu -3 308 1 294 29 0 0 chr5 45654270 45654305 -157431227 + (TG)n Simple_repeat Simple_repeat 2 36 0 1448 211 93 39 chr5 45654305 45654736 -157430796 + MSTB2 LTR MaLR 4 457 0 256 185 19 0 chr5 45656709 45656763 -157428769 + L1MC4 LINE L1 6658 6712 -1330 351 167 32 16 chr5 45656800 45656926 -157428606 + (TA)n Simple_repeat Simple_repeat 1 128 0 756 265 62 0 chr5 45660156 45660367 -157425165 + MER58A DNA MER1_type 1 224 0 320 275 69 38 chr5 45660530 45660661 -157424871 + LTR33 LTR ERVL 44 178 -343 6053 136 38 15 chr5 45661979 45663367 -157422165 + L1MA6 LINE L1 4877 6298 -2 2050 117 3 3 chr5 45663581 45663864 -157421668 + AluSg SINE Alu 1 283 -27 345 318 16 44 chr5 45663991 45664164 -157421368 + MIR SINE MIR 31 199 -9 4586 126 19 0 chr5 45665064 45665802 -157419730 + L1MA4A LINE L1 5542 6293 -10 1420 119 15 50 chr5 45666752 45666911 -157418621 - L1MA3 LINE L1 0 6305 6157 2768 7 0 0 chr5 45666911 45667209 -157418323 - AluYa5 SINE Alu -13 298 1 1420 119 15 50 chr5 45667209 45667310 -157418222 - L1MA3 LINE L1 -148 6157 6054 930 124 71 6 chr5 45667659 45667828 -157417704 - Tigger2 DNA MER2_type -55 2663 2484 1202 297 112 55 chr5 45667828 45668685 -157416847 - HAL1 LINE L1 -1268 1239 315 1620 197 11 27 chr5 45668685 45669056 -157416476 + MLT1A1 LTR MaLR 1 365 0 1202 297 112 55 chr5 45669056 45669202 -157416330 - HAL1 LINE L1 -2192 315 179 2325 89 0 0 chr5 45669318 45669611 -157415921 - AluY SINE Alu -18 293 1 2159 125 21 3 chr5 45669889 45670226 -157415306 - Tigger2 DNA MER2_type -236 2482 2140 1918 111 29 4 chr5 45670383 45670663 -157414869 + AluSx SINE Alu 1 287 -25 21 36 0 0 chr5 45670663 45670691 -157414841 + AT_rich Low_complexity Low_complexity 1 28 0 756 321 141 5 chr5 45670832 45671228 -157414304 - LTR16A LTR ERVL 0 450 1 2215 101 3 10 chr5 45671851 45672159 -157413373 - AluSx SINE Alu -6 306 1 1624 220 31 3 chr5 45673096 45673451 -157412081 + MLT1A1 LTR MaLR 1 365 0 751 323 82 19 chr5 45674425 45674744 -157410788 + L1PA16 LINE L1 -593 4294967041 -6448 268 245 166 36 chr5 45674991 45675130 -157410402 + L1PA16 LINE L1 769 925 -5268 11868 211 23 56 chr5 45675850 45677291 -157408241 + L1PA16 LINE L1 803 2289 -3934 247 200 0 71 chr5 45677291 45677361 -157408171 - AluJb SINE Alu -78 224 160 11868 211 23 56 chr5 45677361 45679691 -157405841 + L1PA16 LINE L1 2289 4359 -1864 534 16 0 0 chr5 45679691 45679754 -157405778 + (CA)n Simple_repeat Simple_repeat 2 64 0 11868 211 23 56 chr5 45679754 45681560 -157403972 + L1PA16 LINE L1 4359 6222 -1 360 371 104 9 chr5 45682841 45683062 -157402470 - L2 LINE L2 0 3272 3031 2555 151 20 36 chr5 45683319 45683817 -157401715 + LTR2B LTR ERV1 1 490 0 12955 136 39 17 chr5 45685824 45687993 -157397539 - Tigger1 DNA MER2_type 0 2418 202 13204 104 5 8 chr5 45687993 45688484 -157397048 + L1P LINE L1 2708 3199 -2947 1953 134 0 4 chr5 45688484 45688791 -157396741 - AluSg SINE Alu 0 311 6 13204 104 5 8 chr5 45688791 45690248 -157395284 + L1P LINE L1 3199 4651 -1495 341 167 0 0 chr5 45690240 45690312 -157395220 + L1P LINE L1 3223 3294 -2852 * 6514 76 11 8 chr5 45690313 45691177 -157394355 + L1PA7 LINE L1 4657 5529 -625 2771 13 0 0 chr5 45691177 45691481 -157394051 - AluYa5 SINE Alu -7 304 1 6514 76 11 8 chr5 45691481 45692108 -157393424 + L1PA7 LINE L1 5529 6152 -2 228 211 18 0 chr5 45692161 45692218 -157393314 + L1MC4 LINE L1 7905 7962 -80 902 72 16 8 chr5 45692259 45692384 -157393148 - L1PA10 LINE L1 -4 6164 6039 1179 257 136 33 chr5 45692394 45693172 -157392360 + L1ME3 LINE L1 4277 4973 -1189 2169 96 0 7 chr5 45693172 45693463 -157392069 - AluSc SINE Alu -18 291 3 1179 257 136 33 chr5 45693463 45694142 -157391390 + L1ME3 LINE L1 4973 5872 -290 316 328 77 34 chr5 45694453 45694718 -157390814 + L1ME LINE L1 5511 5798 -444 202 100 0 60 chr5 45694724 45694774 -157390758 + (TTA)n Simple_repeat Simple_repeat 3 49 0 242 265 0 0 chr5 45694836 45694885 -157390647 + polypurine Low_complexity Low_complexity 4 52 0 25 65 0 0 chr5 45694939 45694985 -157390547 + AT_rich Low_complexity Low_complexity 1 46 0 452 319 101 42 chr5 45695096 45695642 -157389890 + L1ME4a LINE L1 5317 5894 -227 2278 115 0 3 chr5 45695747 45696059 -157389473 - AluSx SINE Alu -1 311 1 1618 119 56 7 chr5 45697481 45697783 -157387749 + L1MA7 LINE L1 5972 6288 -3 2348 192 113 8 chr5 45697887 45698392 -157387140 + MER74A LTR ERVL 1 558 0 37 62 0 0 chr5 45698615 45698680 -157386852 + AT_rich Low_complexity Low_complexity 1 65 0 806 281 33 5 chr5 45698868 45699078 -157386454 + MER58A DNA MER1_type 6 221 -3 243 0 0 0 chr5 45699110 45699137 -157386395 + (TATAA)n Simple_repeat Simple_repeat 4 30 0 194 79 0 53 chr5 45699618 45699656 -157385876 + (GGA)n Simple_repeat Simple_repeat 3 38 0 1951 115 21 3 chr5 45700162 45700450 -157385082 + AluSq SINE Alu 1 293 -20 244 333 7 37 chr5 45702001 45702136 -157383396 - L1ME LINE L1 -304 5817 5687 552 295 98 27 chr5 45702171 45702395 -157383137 - MIR SINE MIR -21 241 2 365 326 67 19 chr5 45703532 45703721 -157381811 + MIR SINE MIR 32 221 -41 387 278 37 62 chr5 45704404 45704566 -157380966 + MER5B DNA MER1_type 19 176 -2 1792 111 0 0 chr5 45705540 45705775 -157379757 - AluSq SINE Alu -78 235 1 197 291 36 0 chr5 45705838 45705893 -157379639 + L2 LINE L2 3216 3272 0 637 322 105 42 chr5 45706207 45706713 -157378819 + MLT1H LTR MaLR 12 549 0 1873 223 49 10 chr5 45706730 45707219 -157378313 - L1 LINE L1 -3213 2933 2426 225 308 88 22 chr5 45707578 45707669 -157377863 - L2 LINE L2 -8 3264 3168 1230 263 65 31 chr5 45707716 45708195 -157377337 - Charlie4a DNA MER1_type -13 495 1 436 262 78 0 chr5 45708434 45708575 -157376957 + MER112 DNA MER1_type 109 260 0 1731 161 50 7 chr5 45709644 45709943 -157375589 + AluSx SINE Alu 1 312 0 363 289 0 0 chr5 45710194 45710284 -157375248 - L2 LINE L2 -1 3312 3223 287 299 123 10 chr5 45710613 45710751 -157374781 - MIR SINE MIR -62 146 45 2385 224 31 56 chr5 45710795 45711434 -157374098 + MLT1E2 LTR MaLR 1 623 -3 238 319 67 7 chr5 45712124 45712259 -157373273 - L1ME LINE L1 -390 5731 5589 2239 98 3 3 chr5 45712363 45712668 -157372864 + AluSc SINE Alu 1 305 -4 257 301 222 26 chr5 45713780 45713933 -157371599 + MER5A DNA MER1_type 6 188 -1 307 303 124 6 chr5 45713969 45714120 -157371412 - MER5A DNA MER1_type -14 175 4 207 167 0 0 chr5 45714559 45714601 -157370931 + (TTG)n Simple_repeat Simple_repeat 1 42 0 195 129 0 0 chr5 45715001 45715032 -157370500 + (CA)n Simple_repeat Simple_repeat 1 31 0 855 219 28 11 chr5 45715208 45715385 -157370147 + MLT1H LTR MaLR 1 180 -369 330 216 17 121 chr5 45715385 45715501 -157370031 - ORSL DNA AcHobo 0 275 172 1582 199 0 34 chr5 45715502 45715799 -157369733 + AluJb SINE Alu 2 288 -24 768 275 169 13 chr5 45715986 45716299 -157369233 + MLT1H LTR MaLR 188 549 0 259 281 31 31 chr5 45716431 45716527 -157369005 + L1MEd LINE L1 1158 1253 -4866 2671 143 39 12 chr5 45716860 45717344 -157368188 + L1MA7 LINE L1 5336 5832 -459 900 96 0 0 chr5 45717344 45717459 -157368073 + AluSp/q SINE Alu 175 289 -24 2739 137 0 38 chr5 45717459 45717956 -157367576 + L1MA7 LINE L1 5814 6291 0 336 158 40 79 chr5 45718012 45718113 -157367419 - L1MC4 LINE L1 -1 8041 7945 693 307 44 16 chr5 45718490 45718855 -157366677 - HAL1 LINE L1 -281 2226 1852 228 290 110 30 chr5 45718874 45718974 -157366558 + L2 LINE L2 3163 3270 -2 589 327 88 0 chr5 45719868 45720073 -157365459 + MIR SINE MIR 9 231 -31 413 308 38 32 chr5 45720362 45720547 -157364985 - MIR3 SINE MIR -2 206 21 180 0 0 0 chr5 45720703 45720723 -157364809 + (CATATA)n Simple_repeat Simple_repeat 3 22 0 2094 128 13 0 chr5 45721176 45721480 -157364052 + AluSx SINE Alu 4 311 -1 355 224 33 59 chr5 45722402 45722554 -157362978 - L1MC5 LINE L1 -50 7911 7764 198 0 0 0 chr5 45722575 45722597 -157362935 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1630 193 11 4 chr5 45722599 45722879 -157362653 - AluJo SINE Alu -29 283 2 31 68 0 0 chr5 45722908 45722967 -157362565 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr5 45723994 45724015 -157361517 + AT_rich Low_complexity Low_complexity 1 21 0 262 239 15 0 chr5 45724017 45724084 -157361448 - L1MC5 LINE L1 -399 7562 7495 699 90 156 0 chr5 45724093 45724215 -157361317 + L1MA8 LINE L1 6147 6287 -4 1531 243 47 67 chr5 45724243 45724946 -157360586 - L1MC5 LINE L1 -451 7510 6822 219 263 0 0 chr5 45724998 45725055 -157360477 + (TA)n Simple_repeat Simple_repeat 1 57 0 1351 199 107 0 chr5 45726070 45726342 -157359190 - MLT1D LTR MaLR 0 505 205 364 157 14 43 chr5 45726341 45726411 -157359121 - MLT1D LTR MaLR -435 70 3 * 375 226 58 58 chr5 45726415 45726552 -157358980 - MIR SINE MIR -21 241 105 3243 206 72 3 chr5 45727134 45727818 -157357714 - MER44D DNA MER2_type 0 605 3 5188 152 13 9 chr5 45727835 45728190 -157357342 - L1PB4 LINE L1 -15 6141 5789 438 20 0 0 chr5 45728190 45728241 -157357291 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 5188 152 13 9 chr5 45728241 45728613 -157356919 - L1PB4 LINE L1 -367 5789 5407 1918 186 103 3 chr5 45728613 45729000 -157356532 + MSTB LTR MaLR 1 426 0 5188 152 13 9 chr5 45729000 45729209 -157356323 - L1PB4 LINE L1 -749 5407 5200 629 251 17 29 chr5 45729900 45730075 -157355457 + MLT1H1 LTR MaLR 383 555 0 1113 296 64 14 chr5 45730148 45730570 -157354962 - MLT1J2 LTR MaLR -7 443 1 259 318 64 0 chr5 45731355 45731465 -157354067 - MER117 DNA MER1_type -56 141 25 534 331 104 21 chr5 45731520 45731807 -157353725 - L2 LINE L2 -7 3265 2955 2343 85 0 16 chr5 45732295 45732602 -157352930 - AluSc SINE Alu -7 302 1 30 0 0 0 chr5 45733390 45733420 -157352112 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr5 45733562 45733594 -157351938 + AT_rich Low_complexity Low_complexity 1 32 0 2511 112 0 32 chr5 45734775 45734815 -157350717 - THE1B LTR MaLR 0 364 324 2211 64 26 51 chr5 45734815 45735127 -157350405 + AluY SINE Alu 1 304 -7 2511 112 0 32 chr5 45735127 45735461 -157350071 - THE1B LTR MaLR -40 324 2 268 318 0 0 chr5 45736563 45736673 -157348859 + A-rich Low_complexity Low_complexity 1 110 0 189 0 0 0 chr5 45738029 45738050 -157347482 + (GGCTG)n Simple_repeat Simple_repeat 1 21 0 2416 243 71 8 chr5 45738370 45738958 -157346574 - MLT1E2 LTR MaLR 0 626 2 946 260 180 17 chr5 45739795 45740211 -157345321 + MLT1F1 LTR MaLR 74 557 -10 2225 110 0 0 chr5 45740401 45740700 -157344832 + AluY SINE Alu 1 299 -12 192 382 0 0 chr5 45740835 45740890 -157344642 + MIR SINE MIR 40 94 -114 353 298 91 50 chr5 45741157 45741608 -157343924 + L1ME1 LINE L1 5333 5797 -553 894 184 6 12 chr5 45741732 45741895 -157343637 + AluJo SINE Alu 125 286 -26 2123 106 3 3 chr5 45742348 45742655 -157342877 - AluSg SINE Alu 0 307 1 604 113 130 9 chr5 45743704 45743819 -157341713 - MSTC LTR MaLR 0 428 300 237 300 126 57 chr5 45743938 45744168 -157341364 + L2 LINE L2 3068 3313 0 1481 205 3 24 chr5 45744374 45744672 -157340860 - AluJo SINE Alu -20 292 1 858 157 59 39 chr5 45744672 45744876 -157340656 - MER3 DNA MER1_type 0 209 2 1256 137 0 81 chr5 45744909 45745143 -157340389 - AluSc SINE Alu -4 305 91 424 103 39 13 chr5 45745742 45745820 -157339712 + MADE1 DNA Mariner 1 80 0 381 43 0 0 chr5 45746369 45746416 -157339116 + (TG)n Simple_repeat Simple_repeat 2 48 0 273 286 167 0 chr5 45747800 45747926 -157337606 + MIR3 SINE MIR 55 201 -7 1134 248 30 21 chr5 45749062 45749401 -157336131 + L1ME1 LINE L1 5808 6149 -17 1442 253 100 42 chr5 45749951 45750453 -157335079 + MLT1F LTR MaLR 12 542 0 726 253 70 38 chr5 45750741 45751213 -157334319 + MLT1H1 LTR MaLR 1 524 -31 1225 89 0 0 chr5 45751352 45751510 -157334022 - AluY SINE Alu -7 304 147 1993 117 0 32 chr5 45753798 45754100 -157331432 + AluSx SINE Alu 9 301 0 558 67 0 0 chr5 45754358 45754433 -157331099 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 2619 216 16 46 chr5 45754486 45755156 -157330376 + MER82 DNA MER2_type 3 652 -1 180 0 0 0 chr5 45755187 45755207 -157330325 + (TG)n Simple_repeat Simple_repeat 1 20 0 370 231 22 22 chr5 45755208 45755299 -157330233 + MLT1A1 LTR MaLR 26 116 -249 4426 192 50 7 chr5 45755315 45756142 -157329390 + L1MA2 LINE L1 17 878 -6687 * 15771 158 15 10 chr5 45756127 45760980 -157324552 + L1MA2 LINE L1 2806 7685 -38 234 158 0 0 chr5 45760993 45761031 -157324501 - L1M1 LINE L1 -443 5862 5825 * 274 51 0 0 chr5 45761030 45761069 -157324463 + L1MA3 LINE L1 6266 6304 -1 643 214 55 39 chr5 45761105 45761287 -157324245 + MLT1A1 LTR MaLR 170 354 -11 5374 136 17 25 chr5 45761742 45762581 -157322951 - L1PA15 LINE L1 -8 6157 5315 2598 80 119 5 chr5 45762581 45762983 -157322549 - LTR7 LTR ERV1 -2 448 1 5374 136 17 25 chr5 45762983 45763601 -157321931 - L1PA15 LINE L1 -850 5315 4693 374 385 91 23 chr5 45763902 45764330 -157321202 + L2 LINE L2 2852 3308 -5 372 270 133 52 chr5 45764559 45764792 -157320740 - MER110A LTR ERV1 0 468 217 255 61 0 0 chr5 45764819 45764852 -157320680 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 263 221 39 0 chr5 45765624 45765701 -157319831 - MER116 DNA Mariner 0 80 1 224 254 142 65 chr5 45765701 45765870 -157319662 - MIR3 SINE MIR -14 194 13 32 57 0 0 chr5 45766623 45766676 -157318856 + AT_rich Low_complexity Low_complexity 1 53 0 344 269 87 20 chr5 45766704 45766853 -157318679 + L1ME LINE L1 5491 5645 -519 445 257 28 73 chr5 45767135 45767195 -157318337 - L1ME1 LINE L1 -6 6160 6099 2829 16 0 0 chr5 45767195 45767507 -157318025 - AluYb8 SINE Alu -6 312 1 445 257 28 73 chr5 45767507 45767680 -157317852 - L1ME1 LINE L1 -67 6099 5938 242 220 0 34 chr5 45767800 45767859 -157317673 + LTR33A LTR ERVL 62 118 -405 2682 263 14 41 chr5 45767924 45768706 -157316826 - L1M4 LINE L1 -5774 768 8 22 35 0 0 chr5 45768947 45768976 -157316556 + AT_rich Low_complexity Low_complexity 1 29 0 2312 76 0 10 chr5 45769427 45769718 -157315814 + AluY SINE Alu 1 288 -23 180 0 0 0 chr5 45769725 45769745 -157315787 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 281 81 0 0 chr5 45770214 45770251 -157315281 - HSMAR1 DNA Mariner 0 1287 1251 855 354 85 44 chr5 45771154 45771606 -157313926 - L2 LINE L2 -675 2639 2207 1961 143 3 0 chr5 45771606 45771906 -157313626 + AluSx SINE Alu 1 301 -11 855 354 85 44 chr5 45771906 45772391 -157313141 - L2 LINE L2 -1107 2207 1663 894 174 52 19 chr5 45772415 45772627 -157312905 + L1MA6 LINE L1 6082 6300 0 949 67 17 34 chr5 45772698 45772892 -157312640 + (GAAA)n Simple_repeat Simple_repeat 1 365 0 949 67 17 34 chr5 45772892 45773070 -157312462 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 1518 216 111 23 chr5 45773242 45773593 -157311939 + MLT2B1 LTR ERVL 1 382 -138 525 55 0 0 chr5 45773628 45773701 -157311831 + (GA)n Simple_repeat Simple_repeat 2 74 0 1101 267 63 31 chr5 45773710 45774155 -157311377 + L1ME3 LINE L1 1489 1947 -4449 516 296 79 32 chr5 45774176 45774549 -157310983 + L1ME3 LINE L1 5065 5457 -758 414 324 73 21 chr5 45774667 45774954 -157310578 + L1ME3 LINE L1 5595 5896 -335 2153 165 43 30 chr5 45776506 45777051 -157308481 + MLT2A2 LTR ERVL 1 554 0 1405 200 23 42 chr5 45778513 45778823 -157306709 + AluJb SINE Alu 1 304 -8 636 316 34 17 chr5 45778929 45779163 -157306369 + MIR SINE MIR 13 250 -12 969 149 12 0 chr5 45779479 45779640 -157305892 + U1 snRNA snRNA 1 163 -2 287 250 33 100 chr5 45780623 45780743 -157304789 + MIR3 SINE MIR 82 193 -15 252 0 0 0 chr5 45781571 45781599 -157303933 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 484 232 219 0 chr5 45782886 45783041 -157302491 + MER5A DNA MER1_type 1 189 0 2300 110 36 3 chr5 45783117 45783473 -157302059 - L1PB1 LINE L1 -1 6150 5783 467 59 30 40 chr5 45783474 45783575 -157301957 + (TA)n Simple_repeat Simple_repeat 2 101 0 199 0 0 61 chr5 45783666 45783699 -157301833 + (TA)n Simple_repeat Simple_repeat 1 31 0 505 172 9 38 chr5 45783699 45783806 -157301726 - L1PB1 LINE L1 -377 5777 5678 * 1061 113 5 0 chr5 45783747 45783918 -157301614 + L1PB1 LINE L1 5528 5704 -447 303 348 11 26 chr5 45784988 45785168 -157300364 + MER5A DNA MER1_type 7 173 -5 961 244 162 42 chr5 45785380 45785811 -157299721 - MLT1D LTR MaLR -22 483 1 286 346 60 17 chr5 45787056 45787236 -157298296 - MIR3 SINE MIR -36 172 7 36 23 0 0 chr5 45788013 45788056 -157297476 + AT_rich Low_complexity Low_complexity 1 43 0 897 205 0 0 chr5 45789580 45789741 -157295791 + AluSg/x SINE Alu 137 297 -15 21 0 0 0 chr5 45789748 45789769 -157295763 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr5 45789977 45790005 -157295527 + AT_rich Low_complexity Low_complexity 1 28 0 2024 175 2 53 chr5 45791446 45791857 -157293675 - MLT1B LTR MaLR 0 390 1 486 279 105 8 chr5 45792218 45792503 -157293029 + L1ME LINE L1 5256 5575 -595 772 321 138 32 chr5 45792709 45793239 -157292293 - L3 LINE CR1 -265 1312 727 195 139 0 0 chr5 45793274 45793310 -157292222 + (TG)n Simple_repeat Simple_repeat 1 36 0 247 260 0 0 chr5 45793318 45793395 -157292137 + (TA)n Simple_repeat Simple_repeat 1 77 0 22 0 0 0 chr5 45793741 45793763 -157291769 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr5 45794055 45794078 -157291454 + AT_rich Low_complexity Low_complexity 1 23 0 391 286 20 14 chr5 45794105 45794252 -157291280 - MER103 DNA DNA -16 150 3 184 290 140 11 chr5 45794312 45794405 -157291127 - L2 LINE L2 -769 2545 2441 263 313 28 16 chr5 45795365 45795485 -157290047 + MIR SINE MIR 36 153 -64 1101 295 57 26 chr5 45797350 45797774 -157287758 + LTR16C LTR ERVL 53 489 -2 187 337 92 0 chr5 45797779 45797877 -157287655 - L2 LINE L2 -30 3283 3177 904 355 37 9 chr5 45798273 45798622 -157286910 - LTR16A LTR ERVL -26 424 66 333 212 24 35 chr5 45799521 45799606 -157285926 + MIR3 SINE MIR 118 201 -7 604 203 65 54 chr5 45799966 45800190 -157285342 - LTR45 LTR ERV1 -8 609 302 1655 180 76 59 chr5 45800548 45800613 -157284919 - MLT2B1 LTR ERVL -8 512 450 228 100 0 0 chr5 45800613 45800653 -157284879 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1655 180 76 59 chr5 45800653 45800675 -157284857 - MLT2B1 LTR ERVL -70 450 430 2126 143 0 6 chr5 45800675 45800989 -157284543 - AluSx SINE Alu 0 312 1 1655 180 76 59 chr5 45800989 45801351 -157284181 - MLT2B1 LTR ERVL -90 430 1 622 333 95 26 chr5 45801649 45802112 -157283420 + L2 LINE L2 1958 2452 -862 2425 88 0 0 chr5 45803617 45803923 -157281609 - AluSq SINE Alu -7 306 1 25 95 0 0 chr5 45804600 45804674 -157280858 + AT_rich Low_complexity Low_complexity 1 74 0 372 315 91 59 chr5 45804873 45805531 -157280001 - L1MC4a LINE L1 -1875 5933 5255 22 56 0 0 chr5 45805616 45805652 -157279880 + AT_rich Low_complexity Low_complexity 1 36 0 31870 89 9 7 chr5 45806660 45807633 -157277899 - L1PA6 LINE L1 0 6154 5184 207 0 0 0 chr5 45807633 45807656 -157277876 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 31870 89 9 7 chr5 45807656 45812102 -157273430 - L1PA6 LINE L1 -970 5184 724 396 319 65 35 chr5 45813430 45813599 -157271933 - LTR16C LTR ERVL -167 324 151 21 36 0 0 chr5 45813926 45813954 -157271578 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr5 45814046 45814077 -157271455 + AT_rich Low_complexity Low_complexity 1 31 0 753 371 75 1 chr5 45814364 45814803 -157270729 + L2 LINE L2 2592 3065 -207 180 353 0 0 chr5 45815100 45815168 -157270364 - L2 LINE L2 -961 2353 2286 * 863 305 8 30 chr5 45815153 45815415 -157270117 + MIR SINE MIR 7 262 0 2299 114 0 0 chr5 45815431 45815730 -157269802 - AluSx SINE Alu -13 299 1 1864 150 10 7 chr5 45817360 45817666 -157267866 - AluJo SINE Alu -5 307 1 180 97 0 0 chr5 45817810 45817841 -157267691 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 211 294 0 0 chr5 45820651 45820719 -157264813 + T-rich Low_complexity Low_complexity 1 68 0 409 322 17 0 chr5 45821522 45821640 -157263892 + L2 LINE L2 3151 3270 -2 186 71 0 0 chr5 45821894 45821922 -157263610 + (TC)n Simple_repeat Simple_repeat 2 29 0 308 259 55 34 chr5 45822968 45823100 -157262432 + MIR SINE MIR 8 146 -62 255 61 0 0 chr5 45823473 45823506 -157262026 + (TATG)n Simple_repeat Simple_repeat 3 35 0 2199 162 6 3 chr5 45823506 45823871 -157261661 - MER47A DNA MER2_type 0 366 1 252 272 12 0 chr5 45823901 45823982 -157261550 + (TA)n Simple_repeat Simple_repeat 2 83 0 378 265 13 40 chr5 45824063 45824214 -157261318 - MER103 DNA DNA -4 162 16 1183 176 19 159 chr5 45824312 45824726 -157260806 + MLT1A1 LTR MaLR 5 360 -5 22 0 0 0 chr5 45825554 45825576 -157259956 + AT_rich Low_complexity Low_complexity 1 22 0 439 276 148 35 chr5 45825618 45825908 -157259624 + L1MEd LINE L1 844 1166 -4953 1163 288 44 28 chr5 45825922 45826504 -157259028 + L2 LINE L2 2714 3309 -4 284 325 48 32 chr5 45826745 45826871 -157258661 - MIR SINE MIR -112 150 23 612 203 65 0 chr5 45827206 45827329 -157258203 + MLT1L LTR MaLR 149 279 -336 275 280 32 21 chr5 45827880 45827973 -157257559 - MIR SINE MIR -83 125 32 336 261 33 11 chr5 45828035 45828127 -157257405 - MIR SINE MIR -83 125 32 584 330 27 21 chr5 45828670 45828858 -157256674 + MIR SINE MIR 1 189 -73 393 231 99 16 chr5 45828870 45828991 -157256541 + MIR SINE MIR 132 262 0 240 335 90 57 chr5 45829035 45829369 -157256163 - L2 LINE L2 -23 3290 2946 1832 167 0 0 chr5 45830053 45830346 -157255186 + AluSx SINE Alu 1 293 -19 348 250 45 30 chr5 45831157 45831289 -157254243 + L1MEd LINE L1 1021 1154 -4965 267 275 92 37 chr5 45831389 45831498 -157254034 - L2 LINE L2 -5 3308 3194 1376 223 7 4 chr5 45832644 45832917 -157252615 - AluJo SINE Alu -23 289 16 1851 143 61 30 chr5 45833139 45833502 -157252030 - THE1C LTR MaLR 0 375 2 301 302 69 48 chr5 45834460 45834649 -157250883 + MIR SINE MIR 14 206 -56 22 35 0 0 chr5 45834664 45834693 -157250839 + AT_rich Low_complexity Low_complexity 1 29 0 808 279 79 0 chr5 45834818 45835047 -157250485 + MIR SINE MIR 6 252 -10 2861 112 11 20 chr5 45835555 45835993 -157249539 - MER57B LTR ERV1 0 434 1 1487 113 121 0 chr5 45835993 45836224 -157249308 - MER57B-int LTR ERV1 0 7537 7279 733 132 23 23 chr5 45836224 45836353 -157249179 - LTR54B LTR ERV1 -367 131 3 6892 123 54 10 chr5 45836359 45838095 -157247437 - MER57B-int LTR ERV1 -486 7330 5309 5634 147 44 28 chr5 45838100 45839765 -157245767 - MER57B-int LTR ERV1 -1720 3836 2186 252 137 59 0 chr5 45839761 45839812 -157245720 - MER57B-int LTR ERV1 -3726 2220 2167 * 4331 161 79 10 chr5 45839808 45841247 -157244285 - MER57B-int LTR ERV1 -2904 1976 288 * 4413 134 21 8 chr5 45841241 45841907 -157243625 - MER57B-int LTR ERV1 -6862 675 1 2774 105 26 26 chr5 45841911 45842340 -157243192 - MER57B LTR ERV1 -4 430 2 246 95 0 0 chr5 45842436 45842478 -157243054 + (TGGA)n Simple_repeat Simple_repeat 2 43 0 6344 152 53 9 chr5 45843608 45844787 -157240745 - Tigger3b DNA MER2_type 0 1231 1 704 212 92 48 chr5 45845391 45845683 -157239849 + L1MDa LINE L1 1295 1599 -4941 635 259 0 0 chr5 45845685 45845816 -157239716 + FLAM_A SINE Alu 1 131 -2 35936 98 11 9 chr5 45845824 45851964 -157233568 + L1PA6 LINE L1 3 6153 -1 3031 133 14 9 chr5 45851960 45852542 -157232990 + L1PB1 LINE L1 5098 5792 -359 * 182 36 0 36 chr5 45852542 45852570 -157232962 + (TCTA)n Simple_repeat Simple_repeat 3 29 0 3031 133 14 9 chr5 45852570 45852932 -157232600 + L1PB1 LINE L1 5792 6151 0 1036 214 36 16 chr5 45852933 45853185 -157232347 + L1M4 LINE L1 4692 4948 -1198 429 292 34 6 chr5 45853202 45853380 -157232152 + L1M4 LINE L1 5084 5266 -880 3379 240 45 13 chr5 45853385 45854440 -157231092 + L1M4 LINE L1 3067 4154 -1992 806 144 11 249 chr5 45854413 45854795 -157230737 + L1MB8 LINE L1 5643 5933 -245 * 302 336 42 21 chr5 45855720 45855863 -157229669 - L2 LINE L2 -1 3312 3167 284 304 138 73 chr5 45857423 45857792 -157227740 - L2 LINE L2 0 3313 2921 327 93 27 53 chr5 45857800 45857875 -157227657 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 7377 252 28 43 chr5 45857894 45860318 -157225214 + L1MA4A LINE L1 2 2388 -4461 9888 185 68 22 chr5 45860335 45862001 -157223531 + L1MA4A LINE L1 3308 5151 -1821 1493 190 17 48 chr5 45862001 45862290 -157223242 + AluJo SINE Alu 1 280 -32 9888 185 68 22 chr5 45862290 45863409 -157222123 + L1MA4A LINE L1 5151 6217 -755 1242 141 141 0 chr5 45863416 45863664 -157221868 + L1MA4A LINE L1 6341 6623 -382 6687 175 101 35 chr5 45863951 45865522 -157220010 + MER52A LTR ERV1 1 1753 -2 279 296 23 0 chr5 45865581 45865669 -157219863 - MIR SINE MIR -12 250 161 4215 98 27 27 chr5 45865683 45866318 -157219214 - MER41B LTR ERV1 0 635 1 299 167 0 0 chr5 45866644 45866692 -157218840 + Alu SINE Alu 234 281 -21 239 220 34 17 chr5 45867394 45867453 -157218079 + GA-rich Low_complexity Low_complexity 4 63 0 328 350 64 9 chr5 45867579 45867799 -157217733 - MIR SINE MIR -1 261 30 2339 97 0 7 chr5 45867949 45868249 -157217283 - AluSg SINE Alu -12 298 1 315 71 0 0 chr5 45868313 45868355 -157217177 + (CA)n Simple_repeat Simple_repeat 1 42 0 413 307 118 64 chr5 45869699 45870165 -157215367 + L1MEd LINE L1 478 968 -5237 1319 274 148 58 chr5 45870225 45871555 -157213977 + HAL1 LINE L1 15 1464 -1043 290 278 37 9 chr5 45871993 45872101 -157213431 + MER114 LTR ERV 2 112 -536 204 289 0 19 chr5 45872168 45872220 -157213312 - L2 LINE L2 -2 3311 3261 2242 94 3 0 chr5 45872268 45872555 -157212977 + AluSx SINE Alu 24 311 -1 2766 133 4 20 chr5 45872562 45873014 -157212518 - L1PA15 LINE L1 -16 6149 5705 7737 171 26 13 chr5 45873014 45873769 -157211763 + ERVL-D LTR ERVL 2223 3006 -2758 2465 122 89 0 chr5 45873769 45874162 -157211370 + MSTA LTR MaLR 1 428 0 7737 171 26 13 chr5 45874162 45874853 -157210679 + ERVL-D LTR ERVL 3006 3687 -2077 7222 172 28 15 chr5 45874842 45876207 -157209325 + ERVL-D LTR ERVL 4374 5755 -9 * 1021 174 11 0 chr5 45876209 45876393 -157209139 + MLT2D LTR ERVL 1 186 -228 411 68 0 0 chr5 45876408 45876467 -157209065 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 331 102 0 0 chr5 45876468 45876517 -157209015 + MLT2C2 LTR ERVL 413 461 -3 278 310 40 10 chr5 45876531 45876631 -157208901 + L1ME3A LINE L1 5963 6065 -105 279 271 75 28 chr5 45876737 45876951 -157208581 + L1MEd LINE L1 1051 1274 -4931 814 219 71 30 chr5 45877027 45877202 -157208330 - MSTD LTR MaLR -2 394 228 2399 137 39 0 chr5 45877202 45877561 -157207971 - THE1C LTR MaLR 0 375 3 814 219 71 30 chr5 45877561 45877730 -157207802 - MSTD LTR MaLR -168 228 1 2840 235 77 21 chr5 45877735 45878463 -157207069 - MSTD-int LTR MaLR -6 1729 961 * 3655 197 18 12 chr5 45878441 45879211 -157206321 - MSTD-int LTR MaLR -959 776 2 958 204 65 27 chr5 45879212 45879549 -157205983 - MSTD LTR MaLR 0 396 6 4879 179 13 14 chr5 45879643 45880983 -157204549 + L1PA16 LINE L1 4221 5554 -612 2295 144 52 25 chr5 45880984 45881427 -157204105 + L1PA16 LINE L1 5710 6164 -2 304 293 92 24 chr5 45881428 45881592 -157203940 + L1MEd LINE L1 1546 1720 -4676 1695 181 48 0 chr5 45882528 45882703 -157202829 - AluJo SINE Alu -3 309 113 297 0 0 0 chr5 45882703 45882736 -157202796 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1695 181 48 0 chr5 45882736 45882853 -157202679 - AluJo SINE Alu -199 113 3 462 277 25 43 chr5 45883068 45883303 -157202229 - L1MDa LINE L1 -2045 4495 4265 332 304 64 8 chr5 45883488 45883613 -157201919 - L1MDa LINE L1 -2381 4159 4028 403 268 25 46 chr5 45883691 45883930 -157201602 - L1MDa LINE L1 -3625 2915 2682 328 293 41 34 chr5 45883939 45884086 -157201446 - L1MDa LINE L1 -3942 2598 2451 313 257 89 10 chr5 45884079 45884180 -157201352 - L1MDa LINE L1 -4941 1589 1481 * 510 170 11 0 chr5 45884255 45884349 -157201183 - L1MDa LINE L1 -5987 543 449 233 348 22 22 chr5 45884387 45884479 -157201053 + MIR SINE MIR 41 132 -76 2146 115 0 3 chr5 45884550 45884846 -157200686 - AluSc SINE Alu -2 307 13 199 227 134 62 chr5 45884962 45885059 -157200473 + MIR SINE MIR 34 137 -71 588 248 96 54 chr5 45885586 45885900 -157199632 - LTR16A1 LTR ERVL -130 327 1 22 0 0 0 chr5 45886754 45886776 -157198756 + AT_rich Low_complexity Low_complexity 1 22 0 760 168 0 8 chr5 45886776 45886901 -157198631 - AluJb SINE Alu -188 124 1 504 332 25 25 chr5 45887076 45887314 -157198218 - MIR SINE MIR 0 262 25 228 86 0 0 chr5 45888222 45888257 -157197275 + (A)n Simple_repeat Simple_repeat 1 35 0 400 100 143 0 chr5 45888404 45888474 -157197058 - MADE1 DNA Mariner 0 80 1 298 302 149 18 chr5 45888722 45888944 -157196588 + MER102a DNA MER1_type 62 312 -18 1561 163 33 118 chr5 45889707 45890106 -157195426 - MLT1A1 LTR MaLR 0 365 1 218 269 215 0 chr5 45890373 45890466 -157195066 - L2 LINE L2 0 3272 3160 493 225 246 0 chr5 45890576 45890714 -157194818 - MER5A DNA MER1_type 0 189 18 218 293 17 0 chr5 45891442 45891500 -157194032 - MER5B DNA MER1_type -46 132 74 1324 191 71 76 chr5 45893256 45893623 -157191909 + MLT1A1 LTR MaLR 1 365 0 198 325 26 44 chr5 45893801 45893915 -157191617 + MIR SINE MIR 99 210 -52 1055 173 66 0 chr5 45894054 45894251 -157191281 + MER6B DNA MER2_type 1 210 0 422 316 65 36 chr5 45896303 45896471 -157189061 - MER5A DNA MER1_type -5 184 12 839 199 0 75 chr5 45896510 45896696 -157188836 + MER5A DNA MER1_type 3 174 -15 1258 172 52 26 chr5 45896705 45897013 -157188519 + MER33 DNA MER1_type 9 324 0 951 218 69 0 chr5 45897043 45897245 -157188287 + MER20 DNA MER1_type 1 216 -3 465 243 24 89 chr5 45897263 45897432 -157188100 + MER5B DNA MER1_type 20 177 -1 278 211 18 0 chr5 45897500 45897557 -157187975 - MER5A DNA MER1_type -108 81 24 2320 91 17 0 chr5 45897953 45898251 -157187281 + AluSg SINE Alu 1 303 -7 295 275 86 94 chr5 45898586 45898819 -157186713 + L2 LINE L2 3079 3309 -4 323 345 30 12 chr5 45899010 45899175 -157186357 - L2 LINE L2 -420 2894 2727 352 311 155 20 chr5 45899375 45899523 -157186009 + MER5A DNA MER1_type 22 189 0 869 273 34 72 chr5 45899955 45900369 -157185163 + L2 LINE L2 2911 3308 -5 590 304 109 9 chr5 45900392 45900612 -157184920 + MIR SINE MIR 2 243 -19 405 309 71 36 chr5 45900812 45900980 -157184552 - MIR3 SINE MIR -11 197 24 358 328 86 40 chr5 45901046 45901220 -157184312 - MIR3 SINE MIR -11 197 16 448 275 65 30 chr5 45903067 45903267 -157182265 + MIR SINE MIR 1 207 -55 346 304 12 71 chr5 45904864 45905032 -157180500 + MER5A DNA MER1_type 17 174 -15 205 276 146 60 chr5 45905024 45905209 -157180323 + L3b LINE CR1 1149 1349 -234 * 207 0 0 0 chr5 45905742 45905765 -157179767 + (A)n Simple_repeat Simple_repeat 1 23 0 882 179 92 5 chr5 45905940 45906135 -157179397 - MER20 DNA MER1_type -1 218 7 575 304 119 5 chr5 45906593 45906794 -157178738 + MIR SINE MIR 25 248 -14 283 301 57 24 chr5 45907371 45907494 -157178038 + L2 LINE L2 2941 3067 -205 309 317 50 17 chr5 45907666 45907786 -157177746 + L2 LINE L2 3189 3312 -1 22 56 0 0 chr5 45907986 45908022 -157177510 + AT_rich Low_complexity Low_complexity 1 36 0 258 294 65 11 chr5 45908045 45908137 -157177395 - MIR SINE MIR -48 214 118 305 137 0 0 chr5 45908613 45908664 -157176868 + MADE1 DNA Mariner 30 80 0 246 81 0 0 chr5 45909123 45909160 -157176372 + (TG)n Simple_repeat Simple_repeat 2 38 0 320 296 25 54 chr5 45909213 45909527 -157176005 - L1ME4a LINE L1 -218 5903 5599 1564 173 30 12 chr5 45909747 45910112 -157175420 + MER47B DNA MER2_type 1 418 0 609 304 59 32 chr5 45910112 45910220 -157175312 - LTR16C LTR ERVL -56 435 331 433 278 9 17 chr5 45910220 45910335 -157175197 + MER81 DNA DNA 1 114 0 609 304 59 32 chr5 45910335 45910564 -157174968 - LTR16C LTR ERVL -160 331 89 236 220 20 50 chr5 45911027 45911127 -157174405 + (TA)n Simple_repeat Simple_repeat 2 98 0 1040 99 0 0 chr5 45911174 45911326 -157174206 - L1MA4 LINE L1 -69 6231 6080 252 310 28 0 chr5 45912076 45912147 -157173385 - MIR SINE MIR -55 153 81 333 283 0 20 chr5 45912651 45912750 -157172782 - L1MC4 LINE L1 -1334 6708 6612 300 294 11 11 chr5 45912671 45912763 -157172769 + L1MC4 LINE L1 6612 6703 -1339 * 231 36 0 0 chr5 45913415 45913443 -157172089 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1330 134 222 57 chr5 45913779 45913930 -157171602 + MSTA LTR MaLR 1 126 -302 2021 118 0 4 chr5 45913930 45914252 -157171280 - AluSg SINE Alu 0 321 1 1330 134 222 57 chr5 45914252 45914450 -157171082 + MSTA LTR MaLR 126 409 -19 1941 166 3 0 chr5 45917658 45917953 -157167579 + AluJb SINE Alu 1 296 -16 1683 226 100 36 chr5 45918335 45918857 -157166675 + MLT1H1 LTR MaLR 1 555 0 256 363 44 0 chr5 45919101 45919192 -157166340 - L2 LINE L2 -9 3263 3169 1263 228 100 6 chr5 45919257 45919568 -157165964 - MER58B DNA MER1_type 0 341 2 2100 182 37 47 chr5 45921659 45922169 -157163363 + MLT1D LTR MaLR 1 505 0 694 181 0 55 chr5 45922399 45922526 -157163006 + FLAM_A SINE Alu 1 120 -13 197 0 0 67 chr5 45922533 45922563 -157162969 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 738 261 31 15 chr5 45922739 45922934 -157162598 + MIR SINE MIR 40 237 -25 209 309 118 62 chr5 45923246 45923424 -157162108 + MER5A DNA MER1_type 2 189 0 218 313 0 60 chr5 45924321 45924404 -157161128 - MER5A DNA MER1_type -105 84 7 288 0 0 0 chr5 45924921 45924953 -157160579 + (TGG)n Simple_repeat Simple_repeat 3 34 0 525 309 121 53 chr5 45925437 45925851 -157159681 - L1ME4a LINE L1 -218 5903 5462 322 300 50 10 chr5 45926110 45926210 -157159322 - MIR SINE MIR 0 262 159 1616 240 62 5 chr5 45926215 45926652 -157158880 + MLT1C LTR MaLR 6 467 0 354 254 144 0 chr5 45926675 45926791 -157158741 - MIR SINE MIR -72 136 4 2185 166 48 52 chr5 45926808 45927290 -157158242 - LTR26B LTR ERV1 0 531 52 35463 91 12 7 chr5 45927292 45933397 -157152135 - L1PA6 LINE L1 -7 6147 11 431 310 39 19 chr5 45933444 45933599 -157151933 + MIR3 SINE MIR 36 193 -15 267 288 71 65 chr5 45934103 45934273 -157151259 - MIR SINE MIR 0 262 92 225 229 205 12 chr5 45934264 45934347 -157151185 - L2 LINE L2 0 3272 3174 * 3593 110 8 4 chr5 45935313 45935822 -157149710 + MER9 LTR ERVK 1 511 0 621 40 0 0 chr5 45936446 45936522 -157149010 + (GGAA)n Simple_repeat Simple_repeat 3 78 0 1454 168 42 54 chr5 45936982 45937316 -157148216 + MER2 DNA MER2_type 1 330 -15 1814 150 0 41 chr5 45937341 45937635 -157147897 - AluJo SINE Alu -30 282 1 373 317 126 13 chr5 45938153 45938383 -157147149 - MIR SINE MIR -5 257 2 207 328 206 13 chr5 45938727 45938965 -157146567 + L2 LINE L2 2682 2965 -349 189 107 0 0 chr5 45939429 45939457 -157146075 + (CA)n Simple_repeat Simple_repeat 1 28 0 265 261 269 8 chr5 45942436 45942566 -157142966 + L3 LINE CR1 1250 1413 -164 333 315 0 0 chr5 45994153 45994245 -157091287 - L1MC4 LINE L1 -1337 6705 6614 * 337 261 0 22 chr5 45994167 45994259 -157091273 + L1MC4 LINE L1 6614 6703 -1339 7543 186 11 13 chr5 45994261 45996248 -157089284 - L1P5 LINE L1 -564 5587 3611 185 423 32 0 chr5 45997560 45997683 -157087849 - L3 LINE CR1 -23 1554 1428 284 197 0 84 chr5 45997711 45997727 -157087805 + MIR SINE MIR 195 211 -51 2078 117 71 31 chr5 45997727 45998077 -157087455 - THE1B LTR MaLR 0 364 1 284 197 0 84 chr5 45998077 45998131 -157087401 + MIR SINE MIR 211 259 -3 1820 51 21 0 chr5 45999235 45999472 -157086060 - L1PB1 LINE L1 0 6151 5910 1729 169 3 7 chr5 46000659 46000943 -157084589 + AluJb SINE Alu 1 283 -29 2436 126 17 0 chr5 46001527 46001885 -157083647 + THE1B LTR MaLR 1 364 0 455 175 25 0 chr5 46001989 46002069 -157083463 + L1PB4 LINE L1 6057 6138 -18 12171 57 2 0 chr5 46002154 46004474 -157081058 - L1PA6 LINE L1 -6 6148 3816 695 191 37 56 chr5 46004574 46004736 -157080796 - MIR SINE MIR -10 252 94 553 291 133 40 chr5 46004788 46005111 -157080421 - L3 LINE CR1 -7 1570 1218 189 268 54 0 chr5 46005132 46005188 -157080344 + L2 LINE L2 2695 2753 -561 809 238 133 47 chr5 46005239 46005601 -157079931 - MLT1J1 LTR MaLR -47 399 7 215 390 112 4 chr5 46005608 46005857 -157079675 + L2 LINE L2 2821 3096 -176 29 47 0 0 chr5 46005887 46005930 -157079602 + AT_rich Low_complexity Low_complexity 1 43 0 208 333 83 49 chr5 46006011 46006155 -157079377 + L2 LINE L2 2598 2746 -568 512 315 0 14 chr5 46006181 46006324 -157079208 - MER5A DNA MER1_type -48 141 1 221 374 26 0 chr5 46006426 46006541 -157078991 + L2 LINE L2 2933 3050 -222 4836 184 14 29 chr5 46006850 46007839 -157077693 + MER21-int LTR ERV1 2912 3885 -306 7860 106 15 0 chr5 46007939 46009098 -157076434 - L1P3 LINE L1 -5285 1176 1 23 0 0 0 chr5 46009472 46009495 -157076037 + AT_rich Low_complexity Low_complexity 1 23 0 4060 93 17 21 chr5 46009496 46009849 -157075683 - L1PB1 LINE L1 -15 6136 5786 2239 115 0 31 chr5 46009849 46010170 -157075362 - AluSq SINE Alu -2 311 1 4060 93 17 21 chr5 46010170 46010420 -157075112 - L1PB1 LINE L1 -365 5786 5536 181 211 0 96 chr5 46010826 46010878 -157074654 + L2 LINE L2 3221 3267 -5 204 274 119 36 chr5 46011082 46011166 -157074366 - MER5A DNA MER1_type -6 183 93 * 924 196 82 14 chr5 46011107 46011326 -157074206 + MIR SINE MIR 8 241 -21 298 379 8 0 chr5 46011995 46012119 -157073413 + MIR3 SINE MIR 51 175 -33 288 333 28 9 chr5 46012678 46012786 -157072746 + MIR3 SINE MIR 68 177 -31 838 18 0 0 chr5 46013121 46013230 -157072302 - L1P LINE L1 -752 5403 5295 * 3835 11 0 2 chr5 46013228 46013665 -157071867 + L1PA3 LINE L1 5395 5830 -325 1916 181 40 32 chr5 46013917 46014458 -157071074 + MLT2A2 LTR ERVL 1 553 -1 416 289 91 50 chr5 46015642 46015862 -157069670 - MLT1L LTR MaLR 0 615 406 2176 103 0 17 chr5 46015862 46016162 -157069370 + AluSx SINE Alu 1 295 -17 416 289 91 50 chr5 46016162 46016346 -157069186 - MLT1L LTR MaLR -209 406 120 252 59 0 0 chr5 46016520 46016554 -157068978 + (CA)n Simple_repeat Simple_repeat 2 35 0 256 300 0 0 chr5 46017603 46017663 -157067869 + MIR SINE MIR 90 149 -59 2194 105 3 0 chr5 46017939 46018234 -157067298 + AluSg1 SINE Alu 1 296 -13 202 232 0 36 chr5 46018497 46018553 -157066979 + (TCTCTG)n Simple_repeat Simple_repeat 6 59 0 225 151 38 0 chr5 46019120 46019173 -157066359 + (TATAG)n Simple_repeat Simple_repeat 2 56 0 213 304 142 20 chr5 46019818 46019966 -157065566 - L2 LINE L2 -4 3309 3144 835 32 16 58 chr5 46020324 46020512 -157065020 + (TA)n Simple_repeat Simple_repeat 1 180 0 2935 60 21 8 chr5 46020512 46020896 -157064636 - MLT2A1 LTR ERVL -55 389 1 664 105 11 0 chr5 46020896 46020991 -157064541 + MER21A LTR ERV1 481 576 -355 2347 272 77 52 chr5 46021038 46022201 -157063331 + L1PBa LINE L1 412 1603 -5260 1434 149 23 0 chr5 46022201 46022422 -157063110 + AluJb SINE Alu 81 306 -6 2175 128 8 14 chr5 46022422 46022812 -157062720 + L1PB3 LINE L1 692 1079 -5125 7421 202 37 76 chr5 46022828 46024234 -157061298 + L1PB3 LINE L1 3169 4437 -1778 384 22 0 0 chr5 46024234 46024279 -157061253 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 7421 202 37 76 chr5 46024279 46025232 -157060300 + L1PB3 LINE L1 4437 5426 -789 5102 134 10 4 chr5 46025504 46026311 -157059221 + L1PB3 LINE L1 5395 6206 -5 554 148 20 10 chr5 46026687 46026788 -157058744 + MLT1F1 LTR MaLR 1 102 -465 3312 20 2 8 chr5 46026890 46027283 -157058249 + L1PA3 LINE L1 5765 6155 0 579 281 51 23 chr5 46027598 46027815 -157057717 - L2 LINE L2 0 3313 3091 452 312 51 13 chr5 46027841 46027998 -157057534 - MIR3 SINE MIR -39 169 7 228 122 0 0 chr5 46028730 46028771 -157056761 + (GA)n Simple_repeat Simple_repeat 1 41 0 2480 147 19 23 chr5 46029713 46030141 -157055391 - MSTB LTR MaLR 0 426 1 497 268 115 13 chr5 46031008 46031165 -157054367 + MER5B DNA MER1_type 1 173 -5 210 37 0 0 chr5 46031328 46031355 -157054177 + (TTA)n Simple_repeat Simple_repeat 2 28 0 248 331 91 19 chr5 46031574 46031728 -157053804 - L2 LINE L2 -817 2497 2333 508 300 83 0 chr5 46032021 46032201 -157053331 + L2 LINE L2 3119 3313 0 522 249 140 64 chr5 46032214 46032395 -157053137 - MIR SINE MIR -63 145 1 233 258 0 65 chr5 46033029 46033091 -157052441 - MIR SINE MIR -56 152 95 380 274 35 0 chr5 46034292 46034405 -157051127 + MER94 DNA DNA 1 117 -17 21 0 0 0 chr5 46034875 46034896 -157050636 + AT_rich Low_complexity Low_complexity 1 21 0 225 273 26 26 chr5 46034970 46035047 -157050485 + L2 LINE L2 3154 3230 -42 498 108 0 0 chr5 46035066 46035140 -157050392 + (TA)n Simple_repeat Simple_repeat 1 74 0 968 198 0 135 chr5 46035153 46035472 -157050060 - AluJo SINE Alu -33 279 4 492 62 0 0 chr5 46035663 46035727 -157049805 + (TA)n Simple_repeat Simple_repeat 1 64 0 1661 123 0 126 chr5 46035728 46036061 -157049471 - AluJb SINE Alu -21 291 1 235 244 78 33 chr5 46036323 46036413 -157049119 - MIR SINE MIR -123 139 46 576 256 91 22 chr5 46037194 46037424 -157048108 + MER112 DNA MER1_type 2 247 -13 1725 237 64 51 chr5 46037684 46038384 -157047148 + HsTC2a DNA Tc2 4 712 -32 2842 223 78 9 chr5 46038387 46039121 -157046411 + L1ME1 LINE L1 5397 6334 0 2189 123 0 0 chr5 46039130 46039431 -157046101 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr5 46039794 46039816 -157045716 + AT_rich Low_complexity Low_complexity 1 22 0 400 240 77 29 chr5 46040143 46040247 -157045285 + MIR SINE MIR 78 186 -76 22 0 0 0 chr5 46040548 46040570 -157044962 + AT_rich Low_complexity Low_complexity 1 22 0 737 76 0 0 chr5 46041575 46041723 -157043809 + L1PA8 LINE L1 6066 6213 0 472 226 161 19 chr5 46043656 46043811 -157041721 + MER5B DNA MER1_type 2 178 0 2102 114 3 3 chr5 46044074 46044371 -157041161 - AluJb SINE Alu -13 299 3 298 260 0 14 chr5 46044821 46044894 -157040638 + L2 LINE L2 3242 3313 0 2115 146 30 30 chr5 46045637 46046001 -157039531 + THE1B LTR MaLR 1 364 0 342 355 36 68 chr5 46046869 46047120 -157038412 + L2 LINE L2 3001 3243 -29 406 326 14 14 chr5 46047242 46047380 -157038152 - MIR3 SINE MIR -60 148 11 1663 167 0 20 chr5 46047950 46048271 -157037261 + AluSx SINE Alu 1 315 0 21 0 0 0 chr5 46048895 46048916 -157036616 + AT_rich Low_complexity Low_complexity 1 21 0 1848 116 8 0 chr5 46049662 46049912 -157035620 - AluSg SINE Alu -58 252 1 183 156 0 0 chr5 46050227 46050259 -157035273 + (CA)n Simple_repeat Simple_repeat 1 32 0 1519 186 14 26 chr5 46051107 46051456 -157034076 - L1MA10 LINE L1 -3 6331 5987 24 0 0 0 chr5 46051587 46051611 -157033921 + AT_rich Low_complexity Low_complexity 1 24 0 3091 45 3 0 chr5 46051611 46051991 -157033541 - L1PA4 LINE L1 -3 6152 5772 18915 37 2 0 chr5 46051991 46054381 -157031151 + L1P2 LINE L1 3072 5466 -689 24 0 0 0 chr5 46054381 46054405 -157031127 + AT_rich Low_complexity Low_complexity 1 24 0 2472 8 0 0 chr5 46054405 46054670 -157030862 + AluYa5 SINE Alu 36 300 -11 1454 146 40 4 chr5 46055014 46055261 -157030271 - Tigger2 DNA MER2_type 0 2718 2463 1936 105 105 0 chr5 46055306 46055573 -157029959 - AluSg SINE Alu -13 297 3 4136 158 35 4 chr5 46055579 46056313 -157029219 - Tigger2 DNA MER2_type -1946 772 16 1690 161 61 26 chr5 46056310 46056652 -157028880 - MLT1B LTR MaLR -9 381 28 * 10427 102 9 2 chr5 46056726 46061731 -157023801 - L1PA7 LINE L1 -1 6153 957 288 0 0 0 chr5 46062569 46062601 -157022931 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 513 130 0 0 chr5 46062611 46062680 -157022852 - FRAM SINE Alu -39 137 69 1969 144 7 3 chr5 46062702 46063007 -157022525 + AluSx SINE Alu 1 306 -6 272 389 70 13 chr5 46063698 46063927 -157021605 + MIR SINE MIR 8 249 -13 2177 117 3 3 chr5 46064107 46064405 -157021127 - AluSx SINE Alu -14 298 1 21 57 0 0 chr5 46064874 46064909 -157020623 + AT_rich Low_complexity Low_complexity 1 35 0 2715 73 6 3 chr5 46065039 46065393 -157020139 + THE1A LTR MaLR 1 355 0 22 35 0 0 chr5 46066174 46066203 -157019329 + AT_rich Low_complexity Low_complexity 1 29 0 581 262 175 55 chr5 46066246 46066738 -157018794 - MLT1H1 LTR MaLR 0 555 5 213 328 0 0 chr5 46066944 46067002 -157018530 - MIR3 SINE MIR -3 205 148 252 0 0 0 chr5 46069516 46069544 -157015988 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 743 174 90 2 chr5 46069677 46069962 -157015570 + MLT1A2 LTR MaLR 5 374 0 2247 286 130 24 chr5 46070413 46071762 -157013770 + L2 LINE L2 1773 3279 -34 1641 195 26 3 chr5 46072122 46072424 -157013108 - AluJb SINE Alu -3 309 1 446 278 74 6 chr5 46072441 46072603 -157012929 + Charlie8 DNA MER1_type 73 245 -2172 329 209 15 0 chr5 46072679 46072746 -157012786 + Charlie8 DNA MER1_type 1349 1416 -1001 515 295 27 0 chr5 46072992 46073141 -157012391 + MIR SINE MIR 20 172 -90 916 66 0 0 chr5 46073286 46073407 -157012125 + L1PA3 LINE L1 6035 6155 0 1974 138 28 0 chr5 46073601 46073890 -157011642 + AluSx SINE Alu 1 297 -15 282 408 85 23 chr5 46073916 46074436 -157011096 + L2 LINE L2 2425 2976 -338 184 279 128 35 chr5 46074593 46074679 -157010853 + MIR3 SINE MIR 9 102 -106 2199 122 0 7 chr5 46074927 46075231 -157010301 - AluSx SINE Alu -9 303 2 2036 135 0 0 chr5 46076074 46076362 -157009170 - AluSx SINE Alu -24 288 1 21 89 0 0 chr5 46076609 46076665 -157008867 + AT_rich Low_complexity Low_complexity 1 56 0 5834 104 36 5 chr5 46076852 46078068 -157007464 + L1PA11 LINE L1 4922 6174 0 300 221 44 0 chr5 46078229 46078297 -157007235 + L2 LINE L2 3242 3312 -1 2391 82 0 0 chr5 46078745 46079039 -157006493 + AluY SINE Alu 1 294 -17 730 236 169 0 chr5 46080128 46080323 -157005209 - MIR SINE MIR -5 257 30 258 32 0 0 chr5 46080488 46080519 -157005013 + (TATG)n Simple_repeat Simple_repeat 1 31 0 295 194 49 70 chr5 46080549 46080667 -157004865 + MLT1D LTR MaLR 5 107 -406 40838 34 21 1 chr5 46080681 46086712 -156998820 - L1PA2 LINE L1 -2 6153 1 1372 212 40 50 chr5 46086736 46087133 -156998399 + MLT1D LTR MaLR 113 505 0 2078 154 0 0 chr5 46087873 46088179 -156997353 + AluSx SINE Alu 1 306 -6 1052 150 5 10 chr5 46088198 46088398 -156997134 + L1PBa LINE L1 2 200 -6663 9727 144 46 8 chr5 46088400 46090525 -156995007 + L1PBa LINE L1 636 3068 -3794 2321 104 0 0 chr5 46090525 46090823 -156994709 + AluSg SINE Alu 1 298 -12 9727 144 46 8 chr5 46090823 46092124 -156993408 + L1PBa LINE L1 3068 4318 -2544 19249 122 24 22 chr5 46092226 46095547 -156989985 - L1P LINE L1 -2809 3337 11 1595 241 69 33 chr5 46096678 46097276 -156988256 + L1ME3A LINE L1 5540 6158 -12 944 195 126 58 chr5 46097354 46097631 -156987901 + AluJo SINE Alu 1 296 -6 351 290 0 21 chr5 46098784 46098877 -156986655 - MIR SINE MIR -102 106 16 390 277 54 0 chr5 46099343 46099473 -156986059 - L2 LINE L2 -1 3312 3176 998 189 16 0 chr5 46099687 46099872 -156985660 + MER5A DNA MER1_type 1 188 -1 323 320 21 72 chr5 46100756 46100950 -156984582 + L1ME LINE L1 5577 5760 -361 338 242 161 48 chr5 46102717 46102903 -156982629 + MIR SINE MIR 44 250 -12 291 269 0 0 chr5 46104371 46104449 -156981083 + MIR SINE MIR 185 262 0 24 77 0 0 chr5 46104532 46104584 -156980948 + AT_rich Low_complexity Low_complexity 1 52 0 227 273 105 17 chr5 46105559 46105731 -156979801 - L1ME4a LINE L1 -167 5954 5768 293 304 27 14 chr5 46105977 46106197 -156979335 + L1ME4a LINE L1 5556 5778 -343 315 308 109 6 chr5 46106279 46106435 -156979097 + L1ME4a LINE L1 5922 6093 -28 269 318 23 39 chr5 46106555 46106684 -156978848 - L2 LINE L2 -222 3050 2924 193 347 104 18 chr5 46106721 46106889 -156978643 - L2 LINE L2 -1342 1972 1820 1641 79 0 0 chr5 46106889 46107104 -156978428 + L1PA8 LINE L1 5955 6169 -3 193 347 104 18 chr5 46107104 46107272 -156978260 - L2 LINE L2 -1494 1820 1607 3837 178 17 20 chr5 46108631 46109491 -156976041 - L1MA8 LINE L1 -863 5283 4426 3798 160 74 13 chr5 46109489 46110326 -156975206 + L1MA8 LINE L1 5282 6169 -122 * 5433 130 43 6 chr5 46110512 46111623 -156973909 + L1MA8 LINE L1 5130 6284 -7 613 242 21 155 chr5 46111831 46112219 -156973313 + L3 LINE CR1 1108 1443 -134 1525 147 11 29 chr5 46112336 46112615 -156972917 - L1MC1 LINE L1 -2 6331 6058 360 316 22 29 chr5 46112618 46112754 -156972778 + MER5A DNA MER1_type 51 185 -4 215 361 0 0 chr5 46112746 46112807 -156972725 + L3 LINE CR1 1516 1576 -1 * 753 253 6 11 chr5 46112907 46113089 -156972443 - MIR SINE MIR -70 192 12 695 275 77 32 chr5 46113536 46113783 -156971749 + MIR SINE MIR 3 260 -2 23 0 0 0 chr5 46114569 46114592 -156970940 + AT_rich Low_complexity Low_complexity 1 23 0 1236 276 74 19 chr5 46116064 46116632 -156968900 + L1ME3A LINE L1 5309 5907 -263 2102 127 3 22 chr5 46116817 46117132 -156968400 + AluSx SINE Alu 1 309 -3 5671 114 3 0 chr5 46117838 46118516 -156967016 - L1PA15 LINE L1 0 6165 5490 189 0 0 0 chr5 46118516 46118537 -156966995 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5671 114 3 0 chr5 46118537 46118560 -156966972 - L1PA15 LINE L1 -675 5490 5469 1655 95 0 5 chr5 46118560 46118770 -156966762 - AluSq SINE Alu -99 214 6 5671 114 3 0 chr5 46118770 46119201 -156966331 - L1PA15 LINE L1 -696 5469 5058 2897 202 33 5 chr5 46119206 46119851 -156965681 - L1PA15 LINE L1 -1336 4810 4148 2025 110 3 17 chr5 46119935 46120226 -156965306 - AluSx SINE Alu -15 297 11 1664 101 0 22 chr5 46120517 46120745 -156964787 + AluSg/x SINE Alu 84 306 -6 1402 321 144 21 chr5 46122040 46122146 -156963386 + L2 LINE L2 189 281 -3033 1856 184 114 26 chr5 46122146 46122575 -156962957 + MLT1C LTR MaLR 1 467 0 1402 321 144 21 chr5 46122575 46123400 -156962132 + L2 LINE L2 281 1234 -2080 3259 299 157 15 chr5 46123413 46125104 -156960428 + L2 LINE L2 579 2509 -805 510 115 0 13 chr5 46126756 46126834 -156958698 - Tigger2 DNA MER2_type -2641 77 1 392 250 0 0 chr5 46126836 46126920 -156958612 - MIR SINE MIR -67 195 112 * 472 216 31 0 chr5 46126919 46127016 -156958516 + MER5A DNA MER1_type 13 112 -77 348 24 0 0 chr5 46127263 46127304 -156958228 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 357 359 0 18 chr5 46127362 46127529 -156958003 - MIR3 SINE MIR 0 208 45 1173 193 103 53 chr5 46128399 46128782 -156956750 + MLT2B1 LTR ERVL 1 363 -157 231 36 0 0 chr5 46128782 46128810 -156956722 + (TG)n Simple_repeat Simple_repeat 1 28 0 501 17 0 0 chr5 46128810 46128868 -156956664 + (TA)n Simple_repeat Simple_repeat 2 59 0 1173 193 103 53 chr5 46128868 46128920 -156956612 + MLT2B1 LTR ERVL 362 503 -17 610 271 111 69 chr5 46129763 46130302 -156955230 + L1M4 LINE L1 2740 3301 -2845 2270 75 0 50 chr5 46130484 46130802 -156954730 + AluY SINE Alu 1 302 -9 2748 56 0 0 chr5 46132347 46132689 -156952843 + L1PA5 LINE L1 5809 6150 -4 222 271 51 93 chr5 46132942 46133060 -156952472 - L2 LINE L2 -10 3303 3191 182 232 53 42 chr5 46134022 46134117 -156951415 + L2 LINE L2 1633 1728 -1586 422 253 0 10 chr5 46134402 46134501 -156951031 + Charlie2b DNA MER1_type 1041 1138 -1644 1146 225 106 26 chr5 46134574 46135218 -156950314 + Charlie2b DNA MER1_type 2080 2774 -8 289 279 51 46 chr5 46136116 46136268 -156949264 + LTR16A1 LTR ERVL 328 456 -1 259 372 54 27 chr5 46137003 46137261 -156948271 + HERV16 LTR ERVL 711 975 -4021 716 40 0 40 chr5 46137453 46137553 -156947979 + L1PA10 LINE L1 6069 6164 -4 2393 316 58 37 chr5 46137972 46139227 -156946305 + HERV16 LTR ERVL 3523 4804 -960 301 176 0 0 chr5 46139782 46139833 -156945699 - L1MC4 LINE L1 -1337 6705 6655 303 194 60 0 chr5 46139834 46139901 -156945631 - L1ME3 LINE L1 -11 6151 6081 426 352 87 5 chr5 46140018 46140237 -156945295 + L2 LINE L2 2570 2806 -508 248 360 118 55 chr5 46140253 46140542 -156944990 + L2 LINE L2 2966 3272 0 875 163 0 0 chr5 46140612 46140753 -156944779 + AluJb SINE Alu 1 141 -171 214 83 0 42 chr5 46140770 46140818 -156944714 + (TAAAAA)n Simple_repeat Simple_repeat 3 48 0 421 238 54 27 chr5 46142519 46142666 -156942866 - MIR SINE MIR -66 196 46 483 292 35 12 chr5 46142697 46142868 -156942664 + MER5B DNA MER1_type 4 178 0 391 294 199 15 chr5 46143296 46143623 -156941909 - L2 LINE L2 -1042 2272 1886 9816 169 48 53 chr5 46143939 46147646 -156937886 + L1MA3 LINE L1 3500 5731 -574 225 267 0 17 chr5 46147646 46147706 -156937826 + MLT1F1 LTR MaLR 49 107 -460 9816 169 48 53 chr5 46147706 46148279 -156937253 + L1MA3 LINE L1 5731 6305 0 851 202 125 77 chr5 46149136 46149537 -156935995 + Charlie4a DNA MER1_type 83 502 -6 2312 80 0 3 chr5 46151366 46151667 -156933865 + AluY SINE Alu 1 300 -11 429 109 0 0 chr5 46151865 46151929 -156933603 + MSTA LTR MaLR 365 428 0 763 308 89 21 chr5 46151978 46152704 -156932828 - L2 LINE L2 -13 3300 2515 1856 111 63 0 chr5 46153182 46153462 -156932070 - AluSc SINE Alu 0 309 14 207 276 153 55 chr5 46153589 46153752 -156931780 + MER5A DNA MER1_type 7 185 -4 1189 183 139 33 chr5 46153852 46154125 -156931407 - AluJb SINE Alu 0 302 1 541 283 13 0 chr5 46154358 46154510 -156931022 + L1ME3A LINE L1 6007 6160 -10 579 246 52 72 chr5 46154586 46154881 -156930651 + L1ME LINE L1 5480 5788 -378 26 50 0 0 chr5 46155035 46155075 -156930457 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr5 46155087 46155110 -156930422 + AT_rich Low_complexity Low_complexity 1 23 0 227 184 0 0 chr5 46155177 46155215 -156930317 + U6 snRNA snRNA 2 39 -68 3182 61 2 9 chr5 46155255 46155679 -156929853 + L1PA8 LINE L1 5749 6169 -3 6888 25 0 0 chr5 46155693 46156507 -156929025 - L1PA3 LINE L1 -1066 5080 4267 7638 31 0 0 chr5 46156507 46157578 -156927954 + L1PA3 LINE L1 5085 6155 0 531 251 151 22 chr5 46157858 46158037 -156927495 - MIR SINE MIR -1 261 60 1981 126 27 10 chr5 46158098 46158391 -156927141 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr5 46158484 46158505 -156927027 + AT_rich Low_complexity Low_complexity 1 21 0 248 217 63 147 chr5 46158912 46159055 -156926477 - MIR3 SINE MIR -49 159 29 1774 147 0 39 chr5 46159495 46159804 -156925728 - AluJo SINE Alu 0 306 9 366 200 9 19 chr5 46160438 46160543 -156924989 + CT-rich Low_complexity Low_complexity 3 106 0 776 156 35 0 chr5 46161159 46161300 -156924232 + L1PA14 LINE L1 6015 6160 -1 5411 57 0 0 chr5 46362159 46362860 -156722672 + L1PA5 LINE L1 5446 6146 -8 3240 202 35 46 chr5 46362877 46363869 -156721663 + L1ME1 LINE L1 5189 6165 -1 22 56 0 0 chr5 46366376 46366412 -156719120 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr5 46366797 46366818 -156718714 + AT_rich Low_complexity Low_complexity 1 21 0 919 223 57 40 chr5 46368664 46368717 -156716815 - MIR SINE MIR -10 252 201 2457 86 0 0 chr5 46368717 46369018 -156716514 + AluSq SINE Alu 1 301 -12 919 223 57 40 chr5 46369018 46369211 -156716321 - MIR SINE MIR -61 201 2 940 216 19 10 chr5 46369248 46369456 -156716076 - MER20 DNA MER1_type -9 210 1 2274 85 10 3 chr5 46369552 46369845 -156715687 + AluSq SINE Alu 1 295 -18 1636 148 63 25 chr5 46369915 46370199 -156715333 + AluSx SINE Alu 11 305 -7 2077 113 10 3 chr5 46370230 46370522 -156715010 + AluSg SINE Alu 1 294 -16 1124 142 11 11 chr5 46370522 46370698 -156714834 + AluSg/x SINE Alu 134 309 -3 4157 177 42 17 chr5 46370862 46372224 -156713308 - L1MB8 LINE L1 -37 6141 4747 1622 264 25 29 chr5 46372361 46373066 -156712466 + L1M3d LINE L1 1 511 -5380 * 2865 163 69 23 chr5 46373055 46373437 -156712095 + L1MB1 LINE L1 4674 5037 -1158 235 0 28 28 chr5 46373437 46373473 -156712059 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 2865 163 69 23 chr5 46373473 46373849 -156711683 + L1MB1 LINE L1 5037 5452 -743 906 75 8 0 chr5 46373853 46373973 -156711559 + AluSg/x SINE Alu 162 282 -28 6871 49 19 162 chr5 46373973 46375219 -156710313 + SVA Other Other 316 1383 -3 21 0 0 0 chr5 46375272 46375293 -156710239 + AT_rich Low_complexity Low_complexity 1 21 0 2560 160 46 14 chr5 46375293 46375347 -156710185 + L1MB1 LINE L1 5439 5490 -678 2268 110 0 0 chr5 46375347 46375648 -156709884 + AluSx SINE Alu 1 301 -11 2560 160 46 14 chr5 46375648 46376112 -156709420 + L1MB1 LINE L1 5490 5974 -194 2157 123 0 0 chr5 46376113 46376423 -156709109 + AluSg SINE Alu 1 310 0 2160 112 20 3 chr5 46376613 46376907 -156708625 - AluSx SINE Alu -13 299 1 768 189 8 0 chr5 46376914 46377046 -156708486 - FLAM_C SINE Alu 0 133 1 2591 43 3 0 chr5 46377544 46377844 -156707688 - AluY SINE Alu -10 301 1 309 167 24 12 chr5 46377903 46377987 -156707545 + (TA)n Simple_repeat Simple_repeat 2 86 0 31 0 0 0 chr5 46378407 46378438 -156707094 + AT_rich Low_complexity Low_complexity 1 31 0 2169 123 7 7 chr5 46379758 46380066 -156705466 + AluSx SINE Alu 1 308 -4 302 24 48 0 chr5 46380734 46380776 -156704756 + (TTAGGG)n Simple_repeat Simple_repeat 4 47 0 2002 127 0 3 chr5 46381447 46381764 -156703768 - AluSx SINE Alu 0 316 1 1149 80 53 84 chr5 46382175 46382400 -156703132 - L1MB3 LINE L1 -3 6180 5963 26 64 0 0 chr5 46382661 46382708 -156702824 + AT_rich Low_complexity Low_complexity 1 47 0 2035 124 50 16 chr5 46383148 46383511 -156702021 - THE1C LTR MaLR 0 375 1 1614 154 59 26 chr5 46383809 46384082 -156701450 - AluJo SINE Alu -30 282 1 2138 88 10 30 chr5 46384377 46384673 -156700859 - AluSx SINE Alu -22 290 1 745 192 19 13 chr5 46385068 46385224 -156700308 - MER58A DNA MER1_type -22 202 46 286 270 111 9 chr5 46385365 46385506 -156700026 + MER20B DNA MER1_type 56 213 -6 205 250 0 0 chr5 46385652 46385696 -156699836 + (CA)n Simple_repeat Simple_repeat 1 44 0 597 338 125 36 chr5 46386453 46387242 -156698290 - L2 LINE L2 -2 3311 2456 1100 301 183 8 chr5 46387424 46388041 -156697491 - L2 LINE L2 -1208 2106 1382 648 251 137 23 chr5 46388434 46388653 -156696879 - MIR SINE MIR -11 251 8 1901 153 0 13 chr5 46388777 46389077 -156696455 + AluSx SINE Alu 1 296 -16 2885 236 38 23 chr5 46389343 46389893 -156695639 - L1ME1 LINE L1 -5 6230 5654 2121 101 0 11 chr5 46389893 46390362 -156695170 + AluSx SINE Alu 1 466 0 2885 236 38 23 chr5 46390362 46390796 -156694736 - L1ME1 LINE L1 -581 5654 5228 1142 244 30 33 chr5 46390803 46391142 -156694390 - L1ME1 LINE L1 -1290 4925 4586 2547 135 61 10 chr5 46391142 46391549 -156693983 + MSTA LTR MaLR 1 428 0 1142 244 30 33 chr5 46391549 46391700 -156693832 - L1ME1 LINE L1 -1629 4586 4436 938 269 72 28 chr5 46391800 46392231 -156693301 - L1ME1 LINE L1 -4402 1994 1545 493 331 70 21 chr5 46392247 46392631 -156692901 + LTR16B LTR ERVL 62 464 0 1598 281 75 38 chr5 46392632 46393453 -156692079 - L1ME1 LINE L1 -5319 1077 215 2137 128 0 3 chr5 46393453 46393757 -156691775 + AluSx SINE Alu 1 303 -9 1598 281 75 38 chr5 46393757 46393886 -156691646 - L1ME1 LINE L1 -6181 215 92 182 36 0 36 chr5 46394063 46394091 -156691441 + (TAA)n Simple_repeat Simple_repeat 3 29 0 700 317 75 0 chr5 46394091 46394318 -156691214 - MIR SINE MIR -14 248 5 596 316 85 54 chr5 46394688 46395112 -156690420 - L2 LINE L2 -13 3300 2864 2112 128 0 3 chr5 46395238 46395527 -156690005 + AluSx SINE Alu 2 289 -23 21 0 0 0 chr5 46396234 46396255 -156689277 + AT_rich Low_complexity Low_complexity 1 21 0 563 247 123 34 chr5 46396691 46397164 -156688368 + L1MC4 LINE L1 7276 7914 -128 206 216 0 0 chr5 46397166 46397203 -156688329 + (TG)n Simple_repeat Simple_repeat 2 38 0 687 266 6 12 chr5 46397272 46397445 -156688087 - AluJb SINE Alu -12 300 129 195 42 0 0 chr5 46397478 46397502 -156688030 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 842 211 0 0 chr5 46397502 46397663 -156687869 - AluJo SINE Alu -32 280 120 408 321 24 0 chr5 46397728 46397896 -156687636 - L1 LINE L1 -1093 5053 4882 268 274 0 0 chr5 46397938 46398000 -156687532 + A-rich Low_complexity Low_complexity 1 62 0 2259 88 7 3 chr5 46398810 46399105 -156686427 - AluSp SINE Alu -17 296 1 1744 214 62 71 chr5 46399118 46399578 -156685954 + L1MC5 LINE L1 7116 7578 -383 2189 115 0 3 chr5 46399578 46399874 -156685658 - AluSq SINE Alu -18 295 1 1744 214 62 71 chr5 46399874 46399946 -156685586 + L1MC5 LINE L1 7578 7649 -312 2045 135 7 0 chr5 46399946 46400242 -156685290 - AluSx SINE Alu -13 299 2 1744 214 62 71 chr5 46400242 46400525 -156685007 + L1MC5 LINE L1 7649 7925 -36 1865 108 126 0 chr5 46400600 46400869 -156684663 + AluSx SINE Alu 1 303 -9 200 186 0 51 chr5 46401182 46401241 -156684291 + A-rich Low_complexity Low_complexity 3 58 0 14129 125 26 17 chr5 46401377 46401556 -156683976 - Tigger1 DNA MER2_type 0 2418 2242 2426 92 0 0 chr5 46401556 46401851 -156683681 + AluSg SINE Alu 2 296 -14 14129 125 26 17 chr5 46401851 46402035 -156683497 - Tigger1 DNA MER2_type -176 2242 2061 1506 183 48 35 chr5 46402035 46402324 -156683208 + AluJb SINE Alu 1 293 -19 14129 125 26 17 chr5 46402324 46403424 -156682108 - Tigger1 DNA MER2_type -357 2061 920 2433 85 0 3 chr5 46403424 46403731 -156681801 + AluSc SINE Alu 1 306 -3 14129 125 26 17 chr5 46403731 46404650 -156680882 - Tigger1 DNA MER2_type -1498 920 11 2324 106 3 3 chr5 46404830 46405142 -156680390 + AluSx SINE Alu 1 312 0 225 352 64 54 chr5 46405990 46406382 -156679150 - L2 LINE L2 -1738 1576 1181 737 198 71 61 chr5 46408268 46408480 -156677052 - MER20 DNA MER1_type -5 214 1 1912 200 86 103 chr5 46408498 46408706 -156676826 + Charlie1a DNA MER1_type 31 241 -2520 1836 121 89 0 chr5 46408706 46408988 -156676544 + AluJb SINE Alu 1 307 -5 1912 200 86 103 chr5 46408988 46409595 -156675937 + Charlie1a DNA MER1_type 241 832 -623 502 260 80 7 chr5 46409596 46409746 -156675786 + MLT1F LTR MaLR 1 161 -381 245 236 65 106 chr5 46409746 46409869 -156675663 + L1ME3A LINE L1 6029 6146 -24 2122 105 6 25 chr5 46410718 46411033 -156674499 - AluSq SINE Alu -4 309 1 302 297 135 11 chr5 46412911 46413177 -156672355 + L1MC4 LINE L1 7620 7918 -124 201 273 0 0 chr5 46413184 46413239 -156672293 + (TA)n Simple_repeat Simple_repeat 1 55 0 2096 104 10 3 chr5 46413736 46414025 -156671507 + AluSg SINE Alu 1 291 -19 559 280 90 5 chr5 46415095 46415284 -156670248 - MIR3 SINE MIR -1 207 3 781 146 0 24 chr5 46415696 46415819 -156669713 - FLAM_C SINE Alu -20 123 4 709 312 52 12 chr5 46417360 46417610 -156667922 - MIR SINE MIR 0 262 3 303 241 71 7 chr5 46417686 46417827 -156667705 + L1ME4a LINE L1 5971 6120 -1 225 155 84 28 chr5 46418254 46418325 -156667207 + MER116 DNA Mariner 1 75 -5 1560 162 9 70 chr5 46418461 46418789 -156666743 + AluJo SINE Alu 2 309 -3 732 157 0 0 chr5 46418802 46418910 -156666622 - FLAM_C SINE Alu -30 113 6 343 282 106 47 chr5 46418924 46419179 -156666353 - L1ME4a LINE L1 -1 6120 5851 35 54 0 0 chr5 46420229 46420285 -156665247 + AT_rich Low_complexity Low_complexity 1 56 0 180 0 0 0 chr5 46421622 46421642 -156663890 + (A)n Simple_repeat Simple_repeat 1 20 0 1852 164 0 16 chr5 46421915 46422226 -156663306 + AluSx SINE Alu 1 306 -6 2114 108 27 0 chr5 46422334 46422631 -156662901 - AluSx SINE Alu -7 305 1 67 42 0 0 chr5 46422670 46422765 -156662767 + AT_rich Low_complexity Low_complexity 1 95 0 22 35 0 0 chr5 46422933 46422962 -156662570 + AT_rich Low_complexity Low_complexity 1 29 0 1721 168 14 0 chr5 46422963 46423248 -156662284 + AluJo SINE Alu 1 289 -23 389 263 215 19 chr5 46423948 46424157 -156661375 - L2 LINE L2 -1 3312 3063 1643 183 7 3 chr5 46424387 46424672 -156660860 - AluJb SINE Alu -26 286 1 307 276 130 48 chr5 46425197 46425552 -156659980 + HAL1 LINE L1 2 385 -2122 684 286 136 40 chr5 46425594 46426247 -156659285 + HAL1 LINE L1 480 1195 -1312 198 0 0 0 chr5 46426290 46426312 -156659220 + (T)n Simple_repeat Simple_repeat 1 22 0 193 304 29 0 chr5 46426582 46426651 -156658881 + MIR3 SINE MIR 123 193 -15 406 307 62 34 chr5 46426846 46427022 -156658510 + MIR3 SINE MIR 22 202 -6 1739 288 131 4 chr5 46427286 46428263 -156657269 - L2 LINE L2 0 3313 2202 2400 87 0 0 chr5 46428757 46429055 -156656477 - AluSq SINE Alu -15 298 1 1977 118 7 36 chr5 46429394 46429533 -156655999 + AluSx SINE Alu 1 143 -169 2320 91 0 3 chr5 46429533 46429840 -156655692 + AluSq SINE Alu 1 306 -7 1977 118 7 36 chr5 46429840 46430004 -156655528 + AluSx SINE Alu 143 295 -17 332 248 39 31 chr5 46430277 46430406 -156655126 - L1ME1 LINE L1 -22 6144 6015 1824 159 0 43 chr5 46430515 46430841 -156654691 - AluJb SINE Alu 0 312 1 11402 127 32 31 chr5 46430947 46433030 -156652502 - Ricksha_c DNA DNA -13 2033 8 1039 247 157 22 chr5 46433056 46433558 -156651974 + HAL1 LINE L1 1648 2217 -290 221 266 89 13 chr5 46434082 46434161 -156651371 - L2 LINE L2 0 3272 3188 2284 82 3 10 chr5 46435221 46435514 -156650018 + AluSg SINE Alu 1 291 -19 525 288 45 49 chr5 46435633 46435876 -156649656 + MIR SINE MIR 21 262 0 581 206 71 8 chr5 46436497 46436623 -156648909 - MIR SINE MIR -109 153 20 327 73 0 55 chr5 46436823 46436878 -156648654 - L2 LINE L2 0 3313 3262 2203 80 0 11 chr5 46436969 46437287 -156648245 - AluSq SINE Alu 0 315 1 1323 221 47 55 chr5 46437399 46437585 -156647947 + MLT1C LTR MaLR 11 197 -270 342 0 0 0 chr5 46437585 46437623 -156647909 + (GA)n Simple_repeat Simple_repeat 2 39 0 1323 221 47 55 chr5 46437623 46437716 -156647816 + MLT1C LTR MaLR 197 289 -178 2359 94 0 0 chr5 46437716 46438013 -156647519 + AluSx SINE Alu 1 297 -15 1323 221 47 55 chr5 46438013 46438184 -156647348 + MLT1C LTR MaLR 289 458 -9 925 156 7 7 chr5 46438201 46438401 -156647131 + L1MDb LINE L1 1141 1634 -4693 1819 159 3 52 chr5 46438401 46438728 -156646804 + AluSx SINE Alu 1 311 -1 1287 241 48 22 chr5 46438728 46438925 -156646607 + L1MA6 LINE L1 2983 3173 -4392 2259 81 3 0 chr5 46438925 46439238 -156646294 + AluSp SINE Alu 1 314 0 1287 241 48 22 chr5 46439238 46439817 -156645715 + L1MA6 LINE L1 3173 3785 -3780 2597 173 23 19 chr5 46439817 46440309 -156645223 + L1MA6 LINE L1 6114 6610 -955 1999 118 10 0 chr5 46440309 46440597 -156644935 + AluSg SINE Alu 19 309 -1 2597 173 23 19 chr5 46440597 46440670 -156644862 + L1MA6 LINE L1 6610 6681 -884 2177 139 0 0 chr5 46440670 46440979 -156644553 + AluJb SINE Alu 1 309 -3 1761 141 32 0 chr5 46440979 46441292 -156644240 + L1MA6 LINE L1 6784 7106 -604 1766 165 46 14 chr5 46441295 46441665 -156643867 + L1MA6 LINE L1 7335 7716 -3 2381 83 0 3 chr5 46442264 46442586 -156642946 - AluSc SINE Alu 0 309 1 336 284 193 0 chr5 46442642 46442802 -156642730 - MIR3 SINE MIR -65 197 3 307 252 41 81 chr5 46443514 46443637 -156641895 - L1ME3A LINE L1 -88 6082 5965 487 264 174 35 chr5 46443922 46444289 -156641243 - L1MC4a LINE L1 -1867 5941 5524 260 356 0 0 chr5 46444286 46444418 -156641114 - L1ME3A LINE L1 -217 5953 5822 * 2362 101 0 16 chr5 46444528 46444844 -156640688 + AluSq SINE Alu 1 311 -2 2213 93 7 3 chr5 46445576 46445865 -156639667 + AluSq SINE Alu 9 298 -15 2139 152 13 9 chr5 46445865 46446494 -156639038 - L1PB1 LINE L1 -624 5527 4898 3843 107 40 16 chr5 46446494 46446749 -156638783 + L1PB1 LINE L1 5512 5759 -392 468 51 0 0 chr5 46446749 46446808 -156638724 + (CA)n Simple_repeat Simple_repeat 2 60 0 3843 107 40 16 chr5 46446808 46447174 -156638358 + L1PB1 LINE L1 5759 6150 -1 231 214 0 0 chr5 46447442 46447484 -156638048 + MLT1L LTR MaLR 569 610 -5 2268 109 3 6 chr5 46447807 46448120 -156637412 + AluSx SINE Alu 1 312 0 839 108 0 0 chr5 46448867 46448987 -156636545 - L1PB3 LINE L1 -2 6152 6033 180 0 0 0 chr5 46449633 46449653 -156635879 + (CCCCCA)n Simple_repeat Simple_repeat 4 23 0 230 214 43 0 chr5 46449972 46450042 -156635490 + G-rich Low_complexity Low_complexity 4 76 0 225 283 17 0 chr5 46451981 46452041 -156633491 - L3 LINE CR1 -2 1575 1515 6546 71 20 36 chr5 46452160 46453339 -156632193 + SVA Other Other 432 1383 -3 27 0 0 0 chr5 46453339 46453366 -156632166 + AT_rich Low_complexity Low_complexity 1 27 0 1550 192 3 20 chr5 46453805 46454102 -156631430 - AluJo SINE Alu -20 292 1 2208 131 3 0 chr5 46454148 46454453 -156631079 + AluSp SINE Alu 1 306 -7 277 213 16 0 chr5 46454746 46454807 -156630725 - L3 LINE CR1 -561 1016 955 203 338 62 0 chr5 46454825 46454905 -156630627 - L2 LINE L2 -20 3293 3209 1141 202 0 31 chr5 46454947 46455175 -156630357 + AluJo SINE Alu 84 304 -8 2052 146 3 3 chr5 46455313 46455621 -156629911 + AluJb SINE Alu 3 310 -2 2160 112 7 3 chr5 46455621 46455916 -156629616 + AluSx SINE Alu 1 296 -16 2274 90 7 0 chr5 46456007 46456306 -156629226 + AluSx SINE Alu 1 301 -11 2303 100 0 0 chr5 46456884 46457184 -156628348 - AluY SINE Alu -11 300 1 2338 88 0 7 chr5 46457284 46457591 -156627941 + AluSc SINE Alu 1 305 -4 1123 133 0 0 chr5 46457685 46457873 -156627659 + L1MA4A LINE L1 6109 6296 -7 21 0 0 0 chr5 46457876 46457897 -156627635 + AT_rich Low_complexity Low_complexity 1 21 0 1544 179 18 7 chr5 46458186 46458465 -156627067 - AluJb SINE Alu -30 282 1 2189 102 0 3 chr5 46458554 46458848 -156626684 - AluSg SINE Alu -6 304 12 2065 95 27 20 chr5 46459376 46459670 -156625862 + AluY SINE Alu 1 296 -15 1977 150 3 0 chr5 46460261 46460567 -156624965 - AluSx SINE Alu -5 307 1 1149 163 24 20 chr5 46460578 46460830 -156624702 - L1MC3 LINE L1 0 7785 7533 285 51 0 0 chr5 46460830 46460869 -156624663 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1967 108 4 11 chr5 46460877 46461154 -156624378 - AluSg SINE Alu -35 275 1 1255 193 84 36 chr5 46461170 46461502 -156624030 + MLT1A1 LTR MaLR 1 348 -17 3417 196 31 29 chr5 46461576 46462306 -156623226 - MER21B LTR ERV1 -113 750 19 331 321 15 22 chr5 46462325 46462459 -156623073 - L1MC4 LINE L1 -1296 6746 6614 2404 66 3 0 chr5 46462464 46462752 -156622780 - AluSp SINE Alu -24 289 1 4413 145 37 90 chr5 46462804 46463732 -156621800 - L1MC3 LINE L1 -265 7520 6544 2252 141 28 17 chr5 46463732 46464093 -156621439 - MLT1A1 LTR MaLR 0 365 1 4413 145 37 90 chr5 46464093 46464484 -156621048 - L1MC3 LINE L1 -1241 6544 6134 1968 146 0 13 chr5 46464484 46464799 -156620733 - AluJb SINE Alu -1 311 1 2430 78 3 7 chr5 46464808 46465114 -156620418 - AluSp SINE Alu -8 305 1 4413 145 37 90 chr5 46465114 46465222 -156620310 - L1MC3 LINE L1 -1659 6126 6014 2788 163 59 0 chr5 46465222 46465712 -156619820 - LTR53 LTR ERVL 0 519 1 4413 145 37 90 chr5 46465712 46465742 -156619790 - L1MC3 LINE L1 -1771 6014 5984 1909 171 0 3 chr5 46465742 46466041 -156619491 - AluJb SINE Alu -14 298 1 4413 145 37 90 chr5 46466041 46466340 -156619192 - L1MC3 LINE L1 -1801 5984 5840 2243 106 0 7 chr5 46466508 46466801 -156618731 - AluSc SINE Alu -18 291 1 1836 193 37 3 chr5 46466948 46467301 -156618231 + MLT1A1 LTR MaLR 1 365 0 1597 224 47 62 chr5 46467601 46468154 -156617378 - HAL1 LINE L1 -440 2067 1523 309 156 177 0 chr5 46468166 46468263 -156617269 - L1ME1 LINE L1 0 6184 6072 255 170 0 0 chr5 46468266 46468313 -156617219 + (TA)n Simple_repeat Simple_repeat 2 48 0 844 150 23 0 chr5 46468318 46468451 -156617081 - AluJb SINE Alu -176 136 1 357 222 0 127 chr5 46468452 46468494 -156617038 - L1ME1 LINE L1 -48 6118 6072 2320 100 10 0 chr5 46468494 46468803 -156616729 + AluSp SINE Alu 1 312 -1 357 222 0 127 chr5 46468803 46468886 -156616646 - L1ME1 LINE L1 -94 6072 6009 334 158 0 0 chr5 46468882 46468939 -156616593 - L1MC4 LINE L1 -2075 5967 5911 * 553 186 0 0 chr5 46468940 46469026 -156616506 + AluSx SINE Alu 2 87 -226 2176 112 7 0 chr5 46469026 46469320 -156616212 + AluSx SINE Alu 1 296 -16 1666 113 0 21 chr5 46469321 46469560 -156615972 + AluSx SINE Alu 74 307 -3 2299 173 77 62 chr5 46469567 46469896 -156615636 - L1ME1 LINE L1 -258 5908 5565 2898 95 28 5 chr5 46469896 46470329 -156615203 - L1PB2 LINE L1 -1 6150 5708 2299 173 77 62 chr5 46470329 46470582 -156614950 - L1ME1 LINE L1 -601 5565 5317 2448 62 0 33 chr5 46470597 46470903 -156614629 + AluY SINE Alu 1 296 -15 584 126 136 0 chr5 46470905 46471008 -156614524 - AluSc SINE Alu 0 309 193 786 186 122 30 chr5 46471035 46471272 -156614260 - L1ME1 LINE L1 -904 5242 4984 26 0 0 0 chr5 46471296 46471322 -156614210 + AT_rich Low_complexity Low_complexity 1 26 0 1085 178 38 2 chr5 46471388 46471610 -156613922 - L1ME1 LINE L1 -1181 4965 4740 180 0 0 0 chr5 46471623 46471643 -156613889 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2425 81 19 3 chr5 46471746 46472053 -156613479 - AluSq SINE Alu -1 312 1 1758 104 65 11 chr5 46472059 46472319 -156613213 - AluSq SINE Alu -39 274 1 1921 171 13 0 chr5 46472354 46472658 -156612874 - AluJb SINE Alu 0 312 5 373 115 0 0 chr5 46473176 46473228 -156612304 - MLT1A1 LTR MaLR -2 363 312 2236 169 61 2 chr5 46473230 46473626 -156611906 - MSTB LTR MaLR -4 422 4 794 175 31 135 chr5 46473647 46474026 -156611506 - MLT1A1 LTR MaLR -38 358 21 1030 202 112 25 chr5 46474029 46474122 -156611410 + MSTD LTR MaLR 2 85 -311 2026 139 3 3 chr5 46474122 46474424 -156611108 + AluSx SINE Alu 1 302 -10 1030 202 112 25 chr5 46474424 46474658 -156610874 + MSTD LTR MaLR 85 396 0 2407 85 3 7 chr5 46474714 46475020 -156610512 + AluSp SINE Alu 1 305 -8 675 239 100 17 chr5 46475263 46475493 -156610039 + LTR41 LTR ERVL 521 769 -4 2062 128 0 3 chr5 46475642 46475932 -156609600 - AluSx SINE Alu -23 289 1 2150 96 7 7 chr5 46476350 46476632 -156608900 - AluSg SINE Alu -28 282 1 1983 129 14 10 chr5 46477244 46477539 -156607993 - AluSx SINE Alu -16 296 1 27 29 0 0 chr5 46477863 46477897 -156607635 + AT_rich Low_complexity Low_complexity 1 34 0 1702 154 28 18 chr5 46478320 46478605 -156606927 - AluJb SINE Alu -23 289 2 906 159 92 0 chr5 46479260 46479423 -156606109 - AluSg/x SINE Alu -17 293 116 326 280 28 9 chr5 46479883 46479990 -156605542 + L2 LINE L2 3204 3312 -1 239 240 115 31 chr5 46480324 46480420 -156605112 + L2 LINE L2 3209 3312 -1 1770 89 0 13 chr5 46481267 46481502 -156604030 - AluSp SINE Alu -81 232 1 719 175 0 0 chr5 46481832 46481946 -156603586 + AluJb SINE Alu 5 118 -194 2181 120 3 0 chr5 46482004 46482296 -156603236 - AluSc SINE Alu -16 293 1 1232 124 10 161 chr5 46482467 46482758 -156602774 + AluYb8 SINE Alu 1 247 -71 501 178 22 0 chr5 46484753 46484843 -156600689 + MER20 DNA MER1_type 107 198 -21 1220 174 12 21 chr5 46485331 46485573 -156599959 + AluJb SINE Alu 64 303 -9 192 158 0 0 chr5 46486988 46487026 -156598506 + (CTG)n Simple_repeat Simple_repeat 1 38 0 1813 144 3 19 chr5 46487438 46487751 -156597781 + AluJb SINE Alu 1 308 -4 531 215 69 24 chr5 46487751 46487873 -156597659 - MLT1D LTR MaLR -129 376 266 1681 154 55 33 chr5 46487873 46488203 -156597329 - MER44D DNA MER2_type -2 607 1 531 215 69 24 chr5 46488203 46488229 -156597303 - MLT1D LTR MaLR -239 266 243 416 204 97 0 chr5 46488268 46488361 -156597171 - AluSg SINE Alu -181 129 28 520 218 58 78 chr5 46488362 46488568 -156596964 - MLT1D LTR MaLR -302 203 2 2169 102 3 16 chr5 46488880 46489185 -156596347 - AluSx SINE Alu -11 301 1 440 66 79 0 chr5 46489439 46489515 -156596017 - Tigger7 DNA MER2_type -95 2392 2311 678 116 11 0 chr5 46489516 46489611 -156595921 + AluS SINE Alu 2 97 -216 2441 72 3 0 chr5 46489835 46490128 -156595404 - AluSp SINE Alu -19 294 1 811 129 73 0 chr5 46490152 46490276 -156595256 + AluJo/FLAM SINE Alu 1 133 -179 1737 174 3 14 chr5 46490279 46490572 -156594960 + AluJo SINE Alu 13 302 -10 446 149 107 38 chr5 46490873 46491088 -156594444 + L1MA7 LINE L1 5961 6291 0 1433 159 17 21 chr5 46491180 46491413 -156594119 - AluJo SINE Alu -80 232 1 357 275 92 84 chr5 46491589 46491960 -156593572 - L1ME3A LINE L1 -233 5937 5693 26 74 0 0 chr5 46491972 46492026 -156593506 + AT_rich Low_complexity Low_complexity 1 54 0 685 254 115 72 chr5 46492035 46492135 -156593397 - L1MC4a LINE L1 -70 6051 5957 184 57 29 29 chr5 46492135 46492170 -156593362 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 685 254 115 72 chr5 46492170 46492572 -156592960 - L1MC4a LINE L1 -164 5957 5527 196 241 38 51 chr5 46492576 46492655 -156592877 - L2 LINE L2 -186 3086 3009 2277 118 0 0 chr5 46494266 46494572 -156590960 + AluSq SINE Alu 1 306 -7 1791 154 39 0 chr5 46495762 46496041 -156589491 - AluJb SINE Alu -22 290 1 1971 143 84 84 chr5 46496237 46496376 -156589156 - MLT1C LTR MaLR 0 467 329 2190 114 10 0 chr5 46496376 46496675 -156588857 - AluSx SINE Alu -8 304 3 1971 143 84 84 chr5 46496675 46496998 -156588534 - MLT1C LTR MaLR -137 330 5 23 0 0 0 chr5 46497056 46497079 -156588453 + AT_rich Low_complexity Low_complexity 1 23 0 375 106 0 17 chr5 46497250 46497322 -156588210 - AluJb SINE Alu -188 114 65 265 223 128 21 chr5 46497324 46497418 -156588114 - MLT1I LTR MaLR -25 384 281 261 175 48 14 chr5 46497393 46497505 -156588027 - MLT1H LTR MaLR -104 445 256 * 2463 87 0 0 chr5 46497525 46497824 -156587708 - AluSx SINE Alu -13 299 1 576 200 111 93 chr5 46497887 46497956 -156587576 - MLT1H LTR MaLR -318 231 165 1682 191 90 40 chr5 46497956 46498401 -156587131 - MLT1C LTR MaLR 0 467 1 576 200 111 93 chr5 46498401 46498556 -156586976 - MLT1H LTR MaLR -384 165 3 1413 266 128 35 chr5 46498917 46499719 -156585813 - L1ME LINE L1 -4448 1632 715 1893 154 3 23 chr5 46499719 46500024 -156585508 - AluJb SINE Alu -13 299 1 1413 266 128 35 chr5 46500024 46500325 -156585207 - L1ME LINE L1 -5365 715 443 1956 108 63 28 chr5 46500519 46500805 -156584727 - AluSq SINE Alu -17 296 1 1761 165 7 20 chr5 46501202 46501499 -156584033 + AluJb SINE Alu 1 293 -19 2397 84 0 7 chr5 46501641 46501949 -156583583 + AluSc SINE Alu 1 306 -3 2149 96 16 32 chr5 46501949 46502262 -156583270 + AluSx SINE Alu 1 309 -3 24 32 0 0 chr5 46502294 46502325 -156583207 + AT_rich Low_complexity Low_complexity 1 31 0 414 283 50 30 chr5 46502362 46502560 -156582972 + L1MC4a LINE L1 5732 5933 -1875 2154 110 14 3 chr5 46502567 46502858 -156582674 + AluSx SINE Alu 1 294 -18 1797 135 23 0 chr5 46503056 46503316 -156582216 + AluSx SINE Alu 1 266 -46 1241 173 153 4 chr5 46503377 46503631 -156581901 + AluJo SINE Alu 1 292 -20 2263 108 3 0 chr5 46506107 46506404 -156579128 - AluSp SINE Alu -15 298 1 1739 123 54 90 chr5 46506900 46507062 -156578470 + THE1C LTR MaLR 1 167 -208 1944 165 7 0 chr5 46507062 46507359 -156578173 - AluSx SINE Alu -13 299 1 1739 123 54 90 chr5 46507359 46507543 -156577989 + THE1C LTR MaLR 167 334 -41 2256 97 0 17 chr5 46507543 46507843 -156577689 - AluSg SINE Alu -15 295 1 1739 123 54 90 chr5 46507843 46507884 -156577648 + THE1C LTR MaLR 334 375 0 6628 21 12 8 chr5 46507985 46508762 -156576770 - L1PA2 LINE L1 0 6155 5376 21 0 0 0 chr5 46508920 46508941 -156576591 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr5 46509093 46509114 -156576418 + AT_rich Low_complexity Low_complexity 1 21 0 2283 92 7 7 chr5 46509313 46509616 -156575916 - AluSx SINE Alu -9 303 1 656 267 61 0 chr5 46509821 46509986 -156575546 - LTR33 LTR ERVL -344 177 3 191 314 14 0 chr5 46510036 46510106 -156575426 - L2 LINE L2 -1 3312 3242 1600 160 80 3 chr5 46510227 46510515 -156575017 + AluJo SINE Alu 1 310 -2 2071 96 25 11 chr5 46510527 46510807 -156574725 - AluSx SINE Alu -15 297 14 2090 135 0 3 chr5 46511037 46511349 -156574183 + AluSx SINE Alu 1 311 -1 745 113 0 0 chr5 46511487 46511593 -156573939 - FLAM_C SINE Alu -36 107 2 21 57 0 0 chr5 46511648 46511683 -156573849 + AT_rich Low_complexity Low_complexity 1 35 0 421 273 68 74 chr5 46512104 46512497 -156573035 - MLT1J LTR MaLR -43 468 38 1705 180 0 4 chr5 46512551 46512849 -156572683 + AluJb SINE Alu 12 308 0 414 202 0 22 chr5 46513091 46513180 -156572352 + MER65A LTR ERV1 1 87 -358 2403 83 0 3 chr5 46513181 46513481 -156572051 + AluSx SINE Alu 1 299 -13 764 142 8 0 chr5 46513502 46513622 -156571910 + AluSq/x SINE Alu 4 124 -189 2092 151 60 5 chr5 46513623 46513993 -156571539 + MER65A LTR ERV1 56 445 0 2160 98 3 64 chr5 46514104 46514432 -156571100 - AluSg SINE Alu -2 308 1 1653 109 27 16 chr5 46514443 46514700 -156570832 - AluSx SINE Alu -3 309 50 2416 77 3 13 chr5 46514724 46515034 -156570498 - AluY SINE Alu -4 307 1 2154 116 3 7 chr5 46515084 46515385 -156570147 + AluSx SINE Alu 1 300 -12 404 268 31 16 chr5 46515392 46515519 -156570013 - MER5A DNA MER1_type 0 189 61 803 142 24 8 chr5 46515538 46515665 -156569867 - AluJo SINE Alu -177 135 7 4608 92 58 59 chr5 46515894 46516947 -156568585 + MER11A LTR ERVK 1 1266 0 2131 112 7 3 chr5 46517364 46517650 -156567882 + AluSx SINE Alu 1 287 -25 975 299 70 19 chr5 46518364 46518776 -156566756 + LTR16B LTR ERVL 32 464 0 756 205 141 91 chr5 46518961 46519224 -156566308 - LTR1B LTR ERV1 -237 589 314 3874 95 40 0 chr5 46519429 46519957 -156565575 + MER41A LTR ERV1 6 554 0 293 234 37 37 chr5 46519958 46520065 -156565467 - LTR1B LTR ERV1 -681 145 39 1891 148 3 3 chr5 46520127 46520434 -156565098 - AluSx SINE Alu 0 307 1 360 200 120 0 chr5 46520556 46520631 -156564901 + LTR8 LTR ERV1 1 84 -607 2013 140 13 10 chr5 46520639 46520946 -156564586 - AluSx SINE Alu -4 308 1 295 222 242 33 chr5 46521014 46521167 -156564365 - MER5A DNA MER1_type -1 188 4 670 233 23 17 chr5 46521178 46521354 -156564178 - MER5B DNA MER1_type 0 178 2 2307 110 3 0 chr5 46521359 46521659 -156563873 + AluSx SINE Alu 1 301 -11 295 250 10 30 chr5 46521746 46521846 -156563686 + GA-rich Low_complexity Low_complexity 2 99 0 4182 155 11 16 chr5 46522267 46522969 -156562563 - LTR34 LTR ERV1 0 699 1 767 215 98 107 chr5 46522977 46523149 -156562383 - LTR8A LTR ERV1 -4 723 551 1862 159 0 13 chr5 46523149 46523451 -156562081 - AluJb SINE Alu -13 299 2 767 215 98 107 chr5 46523451 46523719 -156561813 - LTR8A LTR ERV1 -176 551 287 346 135 0 0 chr5 46523766 46523818 -156561714 + AluSx SINE Alu 1 52 -248 2717 140 46 64 chr5 46523818 46524317 -156561215 + LTR2B LTR ERV1 1 490 0 1730 119 4 0 chr5 46524317 46524561 -156560971 + AluSx SINE Alu 49 293 -19 1889 165 23 0 chr5 46524747 46525050 -156560482 + AluSx SINE Alu 1 310 -2 641 311 106 49 chr5 46525514 46526061 -156559471 + L2 LINE L2 2117 2694 -620 991 183 12 0 chr5 46526108 46526272 -156559260 + FRAM SINE Alu 1 158 -18 2403 101 0 0 chr5 46526276 46526608 -156558924 + AluSc SINE Alu 1 332 0 310 282 50 54 chr5 46526655 46526914 -156558618 - L1MC5 LINE L1 -64 7897 7640 624 277 25 9 chr5 46527033 46527262 -156558270 - L1MC5 LINE L1 -398 7410 7269 1794 163 7 3 chr5 46527422 46527742 -156557790 + AluJb SINE Alu 1 321 0 2182 103 4 0 chr5 46527916 46528197 -156557335 + AluSq SINE Alu 2 283 -30 1966 121 4 4 chr5 46528197 46528477 -156557055 + AluSg SINE Alu 24 303 -7 24 0 0 0 chr5 46528486 46528510 -156557022 + AT_rich Low_complexity Low_complexity 1 24 0 403 194 0 0 chr5 46528921 46528988 -156556544 + MER5A DNA MER1_type 9 75 -114 2032 154 118 90 chr5 46529000 46529533 -156555999 - LTR10A LTR ERV1 -61 548 1 2167 105 3 3 chr5 46529701 46530006 -156555526 - AluY SINE Alu -6 305 1 2256 93 3 3 chr5 46530410 46530701 -156554831 + AluSx SINE Alu 1 291 -21 233 326 80 7 chr5 46530721 46530859 -156554673 - MIR SINE MIR -26 236 89 4734 54 2 24 chr5 46531388 46531446 -156554086 - LTR8 LTR ERV1 -108 583 525 2227 116 3 0 chr5 46531446 46531757 -156553775 - AluSx SINE Alu 0 312 1 4734 54 2 24 chr5 46531757 46532294 -156553238 - LTR8 LTR ERV1 -166 525 1 309 50 0 0 chr5 46532294 46532334 -156553198 - HUERS-P1 LTR ERV1 0 6263 6224 344 325 67 34 chr5 46532391 46532502 -156553030 + L1MC/D LINE L1 5492 5598 -574 2186 134 0 0 chr5 46532502 46532807 -156552725 + AluSx SINE Alu 1 305 -7 344 325 67 34 chr5 46532807 46532990 -156552542 + L1MC/D LINE L1 5598 5806 -366 2423 82 76 0 chr5 46532992 46533322 -156552210 + THE1A LTR MaLR 1 355 0 11699 98 10 1 chr5 46533322 46534888 -156550644 + THE1A-int LTR MaLR 1 1580 0 2291 98 76 0 chr5 46534888 46535216 -156550316 + THE1A LTR MaLR 1 353 -2 478 339 45 22 chr5 46535664 46535888 -156549644 - MIR SINE MIR 0 262 34 265 267 0 0 chr5 46535965 46536025 -156549507 + MIR SINE MIR 194 253 -9 2032 147 10 0 chr5 46536043 46536349 -156549183 - AluSx SINE Alu -3 309 1 476 248 0 0 chr5 46536479 46536584 -156548948 + L2 LINE L2 3195 3299 -14 1793 172 11 0 chr5 46536807 46537092 -156548440 + AluSx SINE Alu 1 288 -24 2249 109 3 3 chr5 46537120 46537422 -156548110 - AluSq SINE Alu -11 302 1 2391 101 0 0 chr5 46537433 46537740 -156547792 - AluSq SINE Alu -6 307 1 1774 159 13 22 chr5 46537744 46538059 -156547473 - AluJo SINE Alu 0 312 1 2378 168 21 14 chr5 46538379 46538801 -156546731 + MSTB LTR MaLR 1 425 -1 852 285 44 4 chr5 46539844 46540114 -156545418 - L2 LINE L2 -1727 1587 1307 1912 163 7 0 chr5 46540484 46540778 -156544754 - AluSx SINE Alu -16 296 1 607 262 226 0 chr5 46540921 46541196 -156544336 - L2 LINE L2 -1776 1538 1202 342 115 0 0 chr5 46541409 46541470 -156544062 + (TC)n Simple_repeat Simple_repeat 1 61 0 243 140 0 0 chr5 46541469 46541519 -156544013 + (CA)n Simple_repeat Simple_repeat 1 50 0 * 2294 102 10 0 chr5 46541575 46541878 -156543654 - AluSq SINE Alu -7 306 1 6182 217 32 33 chr5 46541995 46542458 -156543074 + L1M4 LINE L1 3577 4039 -2107 2483 55 3 0 chr5 46542458 46542747 -156542785 + AluY SINE Alu 5 294 -17 6182 217 32 33 chr5 46542747 46542873 -156542659 + L1M4 LINE L1 4039 4164 -1982 207 0 0 0 chr5 46542873 46542896 -156542636 + (GA)n Simple_repeat Simple_repeat 2 24 0 6182 217 32 33 chr5 46542896 46543086 -156542446 + L1M4 LINE L1 4164 4353 -1793 2177 125 0 0 chr5 46543086 46543382 -156542150 - AluSx SINE Alu -16 296 1 6182 217 32 33 chr5 46543382 46544251 -156541281 + L1M4 LINE L1 4353 5226 -920 648 234 0 28 chr5 46544251 46544392 -156541140 + Tigger1 DNA MER2_type 1 137 -2281 1941 158 0 0 chr5 46544429 46544713 -156540819 - AluSx SINE Alu -28 284 1 5302 187 61 5 chr5 46544713 46545872 -156539660 - L1M1 LINE L1 -4065 1263 223 6833 60 7 13 chr5 46545974 46546679 -156538853 - L1P LINE L1 -1212 4934 4226 333 0 0 0 chr5 46546679 46546716 -156538816 + (TA)n Simple_repeat Simple_repeat 2 38 0 838 31 0 0 chr5 46546718 46546815 -156538717 - L1PA5 LINE L1 -6 6148 6052 6833 60 7 13 chr5 46546815 46547003 -156538529 - L1P LINE L1 -1921 4225 4044 9013 81 12 1 chr5 46547004 46548233 -156537299 - L1M1 LINE L1 -3304 3024 1782 984 164 52 65 chr5 46548869 46549101 -156536431 - L1M1 LINE L1 -5090 238 10 1764 164 3 30 chr5 46549559 46549863 -156535669 - AluJo SINE Alu -9 303 8 9497 144 22 23 chr5 46549888 46551500 -156534032 + L1P LINE L1 3 1613 -4533 1352 166 0 23 chr5 46551605 46551822 -156533710 - AluSx SINE Alu -100 212 1 30 69 0 0 chr5 46551847 46551905 -156533627 + AT_rich Low_complexity Low_complexity 1 58 0 511 235 81 105 chr5 46551964 46552273 -156533259 - L1MC4a LINE L1 -1717 6091 5791 1738 167 20 10 chr5 46552273 46552566 -156532966 + AluSx SINE Alu 5 300 -12 511 235 81 105 chr5 46552566 46552626 -156532906 - L1MC4a LINE L1 -2017 5791 5731 2259 120 3 0 chr5 46552630 46552938 -156532594 - AluSx SINE Alu -3 309 1 216 0 0 0 chr5 46552944 46552968 -156532564 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1622 186 0 7 chr5 46552976 46553251 -156532281 - AluJo SINE Alu -39 273 1 376 296 41 29 chr5 46553272 46553444 -156532088 - MIR SINE MIR -1 261 88 1786 159 0 11 chr5 46553509 46553792 -156531740 + AluJb SINE Alu 32 311 -1 1483 150 4 39 chr5 46553935 46554195 -156531337 - AluSg SINE Alu -4 306 56 814 103 0 0 chr5 46554400 46554507 -156531025 + FLAM_C SINE Alu 1 107 -36 2078 138 0 3 chr5 46554645 46554957 -156530575 - AluSx SINE Alu -1 311 1 2098 97 25 7 chr5 46555189 46555467 -156530065 + AluSx SINE Alu 14 296 -16 1600 160 80 3 chr5 46555479 46555767 -156529765 - AluJo SINE Alu -2 310 1 191 314 14 0 chr5 46555888 46555958 -156529574 + L2 LINE L2 3242 3312 -1 629 273 61 0 chr5 46556008 46556173 -156529359 + LTR33 LTR ERVL 3 177 -344 2387 91 0 7 chr5 46556378 46556685 -156528847 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr5 46556885 46556906 -156528626 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr5 46557058 46557079 -156528453 + AT_rich Low_complexity Low_complexity 1 21 0 6090 55 3 1 chr5 46557260 46558011 -156527521 + L1PA6 LINE L1 5400 6151 -3 1667 123 102 25 chr5 46560337 46560621 -156524911 - AluSg SINE Alu -4 306 1 1038 161 72 21 chr5 46560626 46560819 -156524713 - AluJo SINE Alu 0 312 110 1071 274 65 71 chr5 46561480 46561721 -156523811 + LTR16C LTR ERVL 1 242 -249 1732 150 0 70 chr5 46561721 46562048 -156523484 - AluSx SINE Alu -8 304 1 1071 274 65 71 chr5 46562048 46562298 -156523234 + LTR16C LTR ERVL 242 489 -2 2311 102 0 7 chr5 46562721 46563025 -156522507 - AluSg SINE Alu -8 302 1 22 0 0 0 chr5 46564855 46564877 -156520655 + AT_rich Low_complexity Low_complexity 1 22 0 1171 105 0 6 chr5 46564915 46565087 -156520445 + L1PA16 LINE L1 5806 5976 -190 402 121 0 0 chr5 46565087 46565153 -156520379 + Alu SINE Alu 239 304 -5 22 0 0 0 chr5 46565376 46565398 -156520134 + AT_rich Low_complexity Low_complexity 1 22 0 332 180 16 0 chr5 46565403 46565464 -156520068 - U7 snRNA snRNA 0 63 2 274 231 0 15 chr5 46565995 46566060 -156519472 - MLT2F LTR ERVL -599 64 1 2302 97 0 34 chr5 46566063 46566384 -156519148 - AluSg SINE Alu 0 310 1 1559 170 79 4 chr5 46566730 46566995 -156518537 - AluJb SINE Alu -27 285 1 4039 125 5 3 chr5 46567142 46567766 -156517766 - L1PB4 LINE L1 -3 6153 5529 856 183 0 14 chr5 46567849 46567991 -156517541 - FRAM SINE Alu -30 146 7 22 56 0 0 chr5 46567994 46568030 -156517502 + AT_rich Low_complexity Low_complexity 1 36 0 2139 123 0 0 chr5 46568030 46568315 -156517217 - AluY SINE Alu -26 285 1 857 173 0 0 chr5 46568338 46568465 -156517067 - FLAM_C SINE Alu -16 127 1 1899 148 101 3 chr5 46568466 46568635 -156516897 - L1PB4 LINE L1 -666 5490 5339 186 71 0 0 chr5 46568635 46568663 -156516869 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1899 148 101 3 chr5 46568663 46568993 -156516539 - L1PB4 LINE L1 -817 5339 4961 244 262 116 23 chr5 46570431 46570603 -156514929 - L1ME4a LINE L1 -47 6074 5887 25 0 0 0 chr5 46571033 46571058 -156514474 + AT_rich Low_complexity Low_complexity 1 25 0 3538 135 23 48 chr5 46571082 46571265 -156514267 - L1MA8 LINE L1 -2 6289 6103 1690 113 0 0 chr5 46571265 46571494 -156514038 + AluSg/x SINE Alu 77 305 -7 3538 135 23 48 chr5 46571494 46572041 -156513491 - L1MA8 LINE L1 -188 6103 5577 332 248 52 46 chr5 46572283 46572483 -156513049 + L1M4c LINE L1 2091 2304 -4078 1120 178 19 19 chr5 46572494 46572702 -156512830 + AluJb SINE Alu 85 292 -20 258 56 0 0 chr5 46572716 46572752 -156512780 + (CAA)n Simple_repeat Simple_repeat 3 38 0 2673 223 28 18 chr5 46572752 46573281 -156512251 + L1M4c LINE L1 2339 2861 -3521 426 20 0 0 chr5 46573281 46573332 -156512200 + (CA)n Simple_repeat Simple_repeat 2 52 0 2673 223 28 18 chr5 46573332 46573466 -156512066 + L1M4c LINE L1 2861 3016 -3366 2092 132 0 3 chr5 46573466 46573762 -156511770 - AluSx SINE Alu -17 295 1 2673 223 28 18 chr5 46573762 46573817 -156511715 + L1M4c LINE L1 3016 3069 -3313 913 206 6 0 chr5 46573817 46573987 -156511545 + FRAM SINE Alu 1 170 -6 1688 179 116 45 chr5 46573989 46574541 -156510991 + L1M4c LINE L1 3053 3643 -2739 305 320 56 0 chr5 46574555 46574680 -156510852 - L1 LINE L1 -3501 2645 2514 756 156 0 62 chr5 46574777 46574937 -156510595 + L1MA3 LINE L1 3649 3798 -2584 5166 175 23 81 chr5 46574950 46575104 -156510428 + L1 LINE L1 4328 4489 -1893 2204 123 0 0 chr5 46575104 46575404 -156510128 + AluSx SINE Alu 1 300 -12 5166 175 23 81 chr5 46575404 46576093 -156509439 + L1 LINE L1 4489 5216 -1166 2136 120 0 10 chr5 46576093 46576424 -156509108 + AluSg SINE Alu 1 310 0 2172 135 0 0 chr5 46576433 46576737 -156508795 + AluSg SINE Alu 1 304 -6 5166 175 23 81 chr5 46576737 46576753 -156508779 + L1 LINE L1 5224 5239 -1143 2107 113 14 3 chr5 46576753 46577045 -156508487 + AluSg SINE Alu 5 299 -11 5166 175 23 81 chr5 46577045 46577565 -156507967 + L1 LINE L1 5239 5639 -743 1873 174 69 48 chr5 46577570 46577795 -156507737 - MSTA LTR MaLR 0 428 188 2237 116 0 0 chr5 46577795 46578088 -156507444 + AluSx SINE Alu 3 295 -17 1873 174 69 48 chr5 46578088 46578281 -156507251 - MSTA LTR MaLR -240 188 1 8959 184 11 11 chr5 46578281 46579932 -156505600 - MSTA-int LTR MaLR 0 1651 1 1319 149 14 9 chr5 46579932 46580146 -156505386 - MSTB LTR MaLR 0 426 212 8837 188 44 28 chr5 46580150 46582825 -156502707 + L1MA3 LINE L1 3788 6513 -28 222 241 19 0 chr5 46583466 46583520 -156502012 - L2 LINE L2 -37 3235 3181 2242 117 0 0 chr5 46584524 46584824 -156500708 - AluSx SINE Alu -12 300 1 2011 120 0 10 chr5 46584887 46585179 -156500353 - AluSx SINE Alu -18 294 6 346 249 111 35 chr5 46586003 46586078 -156499454 - L1ME4a LINE L1 -5 6116 6048 2306 94 0 3 chr5 46586078 46586377 -156499155 - AluSc SINE Alu -11 298 1 346 249 111 35 chr5 46586377 46586751 -156498781 - L1ME4a LINE L1 -73 6048 5603 26 50 0 0 chr5 46586787 46586827 -156498705 + AT_rich Low_complexity Low_complexity 1 40 0 616 126 0 0 chr5 46588244 46588339 -156497193 - AluSg/x SINE Alu 0 310 216 195 42 0 0 chr5 46588602 46588626 -156496906 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 429 371 70 40 chr5 46589445 46589717 -156495815 + L2 LINE L2 2985 3264 -8 463 364 62 18 chr5 46589782 46590054 -156495478 - L2 LINE L2 -181 3091 2808 391 230 23 11 chr5 46591011 46591098 -156494434 - MER81 DNA DNA -22 92 5 21 0 0 0 chr5 46591410 46591431 -156494101 + AT_rich Low_complexity Low_complexity 1 21 0 299 233 80 49 chr5 46592024 46592187 -156493345 - L1M4 LINE L1 -3320 2826 2659 251 341 45 23 chr5 46592236 46592368 -156493164 - L1MEd LINE L1 -5799 320 186 476 265 123 51 chr5 46592462 46593014 -156492518 - L1ME2 LINE L1 -95 6069 5470 461 329 95 25 chr5 46593600 46593843 -156491689 - MIR SINE MIR 0 262 3 747 249 112 17 chr5 46595006 46595239 -156490293 - MIR SINE MIR 0 262 8 213 193 0 35 chr5 46595250 46595307 -156490225 + (TA)n Simple_repeat Simple_repeat 1 55 0 2132 108 3 16 chr5 46595381 46595686 -156489846 - AluSx SINE Alu -11 301 1 640 311 228 34 chr5 46595697 46597078 -156488454 - L2 LINE L2 -407 2907 1073 2330 93 3 0 chr5 46597078 46597380 -156488152 - AluSc SINE Alu -2 307 5 640 311 228 34 chr5 46597380 46597677 -156487855 - L2 LINE L2 -2241 1073 835 24 53 0 0 chr5 46597939 46597977 -156487555 + AT_rich Low_complexity Low_complexity 1 38 0 254 200 0 46 chr5 46597997 46598062 -156487470 + L1MC4 LINE L1 6652 6713 -1329 484 314 35 45 chr5 46598576 46598863 -156486669 + MER102a DNA MER1_type 38 321 -9 1846 159 3 20 chr5 46599894 46600189 -156485343 + AluJo SINE Alu 1 290 -22 282 56 0 0 chr5 46600189 46600225 -156485307 + (TA)n Simple_repeat Simple_repeat 2 37 0 1302 127 0 0 chr5 46601104 46601277 -156484255 + AluSx SINE Alu 20 192 -120 1899 139 42 0 chr5 46601407 46601695 -156483837 - AluSg SINE Alu -10 300 1 405 299 82 16 chr5 46602650 46602844 -156482688 - MIR SINE MIR -50 212 6 23 0 0 0 chr5 46603506 46603529 -156482003 + AT_rich Low_complexity Low_complexity 1 23 0 2806 113 27 7 chr5 46604362 46604806 -156480726 - L1PA13 LINE L1 -2 6161 5709 961 141 42 5 chr5 46605477 46605668 -156479864 - L1 LINE L1 -787 5359 5162 1643 151 4 4 chr5 46605668 46605943 -156479589 + L1PA16 LINE L1 5884 6162 -4 486 307 0 0 chr5 46606188 46606315 -156479217 - L2 LINE L2 -5 3308 3182 589 316 81 0 chr5 46606460 46606669 -156478863 - MIR SINE MIR -20 242 17 243 0 0 0 chr5 46606788 46606815 -156478717 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2255 19 0 0 chr5 46606815 46607075 -156478457 - L1PA5 LINE L1 -11 6143 5884 1031 25 0 0 chr5 46607075 46607194 -156478338 + L1PA5 LINE L1 5762 5880 -275 387 270 80 43 chr5 46607230 46607393 -156478139 - MER5A DNA MER1_type 0 189 21 2183 122 53 46 chr5 46607500 46607675 -156477857 + L1MA4 LINE L1 5887 6059 -241 2307 96 0 0 chr5 46607675 46607967 -156477565 + AluSc SINE Alu 6 297 -12 2183 122 53 46 chr5 46607967 46608202 -156477330 + L1MA4 LINE L1 6059 6300 0 295 186 94 86 chr5 46608709 46608860 -156476672 - L1MC4 LINE L1 -145 7897 7636 2130 118 23 3 chr5 46608911 46609215 -156476317 + AluSx SINE Alu 1 310 -2 2382 158 25 0 chr5 46609235 46609639 -156475893 - L1MC1 LINE L1 -4 6329 5916 629 244 65 6 chr5 46611398 46611566 -156473966 - MER63A DNA MER1_type -28 182 5 2084 107 4 4 chr5 46611755 46612062 -156473470 - AluSp SINE Alu 0 309 3 183 42 0 0 chr5 46612067 46612091 -156473441 + (T)n Simple_repeat Simple_repeat 1 24 0 202 200 25 0 chr5 46612968 46613008 -156472524 - L2 LINE L2 -2 3311 3271 322 318 110 12 chr5 46613073 46613246 -156472286 + L2 LINE L2 3124 3313 0 323 252 56 42 chr5 46614188 46614331 -156471201 + MIR SINE MIR 69 213 -49 490 328 134 0 chr5 46615452 46615653 -156469879 + MIR SINE MIR 35 262 0 1991 140 0 3 chr5 46615693 46615986 -156469546 - AluSx SINE Alu -12 300 9 235 354 31 31 chr5 46617490 46617651 -156467881 + MER5A DNA MER1_type 8 168 -21 * 304 301 56 42 chr5 46617512 46617655 -156467877 - MER5B DNA MER1_type -16 162 18 2198 118 0 28 chr5 46618331 46618652 -156466880 - AluSx SINE Alu 0 312 1 655 223 82 68 chr5 46619716 46619937 -156465595 - L1ME LINE L1 -498 5672 5456 198 0 0 0 chr5 46619937 46619959 -156465573 + (TA)n Simple_repeat Simple_repeat 2 23 0 1851 171 0 3 chr5 46619959 46620252 -156465280 - AluSx SINE Alu -20 292 1 655 223 82 68 chr5 46620252 46620413 -156465119 - L1ME LINE L1 -713 5457 5276 2913 93 2 41 chr5 46620432 46620677 -156464855 - L1PB1 LINE L1 -7 6144 5920 2211 114 0 23 chr5 46620677 46620985 -156464547 - AluSg SINE Alu -8 302 2 2913 93 2 41 chr5 46620985 46621156 -156464376 - L1PB1 LINE L1 -231 5920 5744 234 181 21 96 chr5 46621203 46621297 -156464235 + L1M4 LINE L1 3140 3226 -2920 2234 105 3 0 chr5 46621379 46621673 -156463859 - AluSc SINE Alu -14 295 1 419 164 60 0 chr5 46621711 46621812 -156463720 - AluSp/q SINE Alu 0 317 213 241 301 34 61 chr5 46622227 46622432 -156463100 - L1MEd LINE L1 -4881 1238 1044 2053 145 26 0 chr5 46622432 46622735 -156462797 - AluSx SINE Alu -1 311 1 241 301 34 61 chr5 46622735 46622855 -156462677 - L1MEd LINE L1 -5075 1044 922 290 45 23 0 chr5 46622867 46622911 -156462621 + (TA)n Simple_repeat Simple_repeat 1 45 0 2064 139 7 3 chr5 46622911 46623221 -156462311 - AluSq SINE Alu -2 311 1 811 133 78 33 chr5 46623272 46623452 -156462080 - L1MC2 LINE L1 0 6344 6157 22 0 0 0 chr5 46623452 46623474 -156462058 + AT_rich Low_complexity Low_complexity 1 22 0 390 198 26 4 chr5 46623495 46623586 -156461946 - L1MA6 LINE L1 -50 6253 6165 22 0 0 0 chr5 46623621 46623643 -156461889 + AT_rich Low_complexity Low_complexity 1 22 0 346 273 0 0 chr5 46624435 46624523 -156461009 - L1PB4 LINE L1 -8 6148 6061 863 191 5 113 chr5 46624819 46624902 -156460630 + FAM SINE Alu 1 4294967212 -269 7467 57 0 0 chr5 46624902 46626171 -156459361 - L1PA8 LINE L1 -2 6170 4879 863 191 5 113 chr5 46626171 46626291 -156459241 + FAM SINE Alu -85 46 -3 1000 125 80 0 chr5 46628352 46628528 -156457004 - L1MB3 LINE L1 0 6183 5994 2354 78 0 10 chr5 46628731 46629027 -156456505 - AluY SINE Alu -18 293 1 1152 183 31 58 chr5 46629161 46629385 -156456147 - MER20 DNA MER1_type -1 218 1 1138 173 81 8 chr5 46629400 46629648 -156455884 - L1MD3 LINE L1 0 7995 7730 2192 101 10 10 chr5 46629676 46629973 -156455559 - AluSx SINE Alu -15 297 1 1015 255 118 42 chr5 46631643 46632118 -156453414 - LTR33 LTR ERVL -7 514 4 2104 144 0 3 chr5 46632161 46632473 -156453059 + AluJb SINE Alu 1 311 -1 2016 143 0 0 chr5 46633183 46633469 -156452063 - AluSx SINE Alu -6 306 21 1308 238 120 27 chr5 46634441 46634916 -156450616 + MER113 DNA MER1_type? 2 520 -1 223 265 137 0 chr5 46634930 46635032 -156450500 + MIR3 SINE MIR 81 196 -12 352 323 15 15 chr5 46636103 46636233 -156449299 + MIR3 SINE MIR 66 195 -13 2187 106 3 7 chr5 46636453 46636754 -156448778 - AluSq SINE Alu -13 300 1 188 290 32 0 chr5 46637360 46637422 -156448110 + L3 LINE CR1 1300 1363 -214 249 254 34 0 chr5 46637524 46637583 -156447949 - LTR16C LTR ERVL -18 473 413 2336 179 26 0 chr5 46638956 46639342 -156446190 - MSTD LTR MaLR 0 396 1 246 224 30 0 chr5 46639441 46639508 -156446024 + (CA)n Simple_repeat Simple_repeat 2 70 0 207 226 38 0 chr5 46639669 46639722 -156445810 + GA-rich Low_complexity Low_complexity 5 59 0 1888 187 55 25 chr5 46641628 46641991 -156443541 - MLT1A2 LTR MaLR 0 374 1 688 199 142 0 chr5 46642369 46642510 -156443022 - ERVL-B1 LTR ERVL -5503 261 101 328 125 0 0 chr5 46642584 46642632 -156442900 - MLT2B1 LTR ERVL -8 512 465 39 0 0 0 chr5 46642654 46642693 -156442839 + AT_rich Low_complexity Low_complexity 1 39 0 363 281 133 33 chr5 46642694 46642904 -156442628 - L1MEc LINE L1 -5402 994 764 1070 295 75 33 chr5 46642996 46643505 -156442027 - L1MEc LINE L1 -5836 560 31 1772 171 7 7 chr5 46643603 46643908 -156441624 - AluJo SINE Alu -7 305 1 2232 118 3 9 chr5 46644069 46644384 -156441148 - AluSp SINE Alu 0 313 1 327 113 0 0 chr5 46645284 46645337 -156440195 + (CA)n Simple_repeat Simple_repeat 2 54 0 2307 107 7 116 chr5 46646147 46646568 -156438964 - THE1C LTR MaLR 0 375 1 11326 109 34 9 chr5 46646568 46648109 -156437423 - THE1C-int LTR MaLR 0 1580 1 2689 131 5 0 chr5 46648109 46648482 -156437050 - THE1C LTR MaLR 0 375 1 543 243 141 23 chr5 46648977 46649028 -156436504 - MIR SINE MIR -10 252 208 1691 181 60 26 chr5 46649028 46649376 -156436156 + MLT1A1 LTR MaLR 2 361 -4 543 243 141 23 chr5 46649376 46649501 -156436031 - MIR SINE MIR -54 208 55 288 250 0 0 chr5 46649784 46649856 -156435676 - MER3 DNA MER1_type 0 209 138 691 199 39 19 chr5 46649889 46650045 -156435487 - MER3 DNA MER1_type -49 160 2 704 197 20 14 chr5 46650264 46650411 -156435121 - MLT1F LTR MaLR 0 542 395 733 190 86 0 chr5 46650417 46650591 -156434941 + MER53 DNA DNA 1 189 0 * 1545 231 71 22 chr5 46650591 46650965 -156434567 - MLT1F LTR MaLR -142 400 7 443 264 16 16 chr5 46650995 46651116 -156434416 + L2 LINE L2 3192 3312 -1 2189 124 0 10 chr5 46651345 46651652 -156433880 + AluSx SINE Alu 1 304 -8 2149 121 3 19 chr5 46655740 46656054 -156429478 + AluSx SINE Alu 1 309 -3 320 281 31 16 chr5 46656588 46656716 -156428816 - MIR3 SINE MIR -26 182 53 2362 94 0 0 chr5 46657272 46657571 -156427961 - AluSq SINE Alu -14 299 1 477 317 36 55 chr5 46657885 46658194 -156427338 + L3b LINE CR1 1146 1448 -135 316 235 0 29 chr5 46658243 46658311 -156427221 - MER58 DNA MER1_type 0 2420 2355 455 311 31 12 chr5 46658337 46658498 -156427034 - LTR16C LTR ERVL -239 252 89 2193 109 6 10 chr5 46660059 46660371 -156425161 + AluSx SINE Alu 1 311 -1 6024 86 7 5 chr5 46660457 46661271 -156424261 + L1PB1 LINE L1 5304 6119 -32 2393 89 7 0 chr5 46661374 46661678 -156423854 + L1PB1 LINE L1 5846 6151 0 204 86 57 0 chr5 46661936 46661971 -156423561 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 804 206 85 155 chr5 46662411 46662765 -156422767 + HsTC2 DNA Tc2 1 329 -1569 483 244 25 46 chr5 46662747 46662944 -156422588 + HsTC2 DNA Tc2 1708 1900 0 * 198 382 52 64 chr5 46664957 46665300 -156420232 - L2 LINE L2 -8 3264 2926 1853 89 67 35 chr5 46665313 46665628 -156419904 + L1MC1 LINE L1 6004 6328 -5 283 191 147 0 chr5 46666111 46666179 -156419353 + L2 LINE L2 3221 3298 -15 2147 142 0 0 chr5 46666344 46666653 -156418879 - AluSx SINE Alu -3 309 1 219 295 16 0 chr5 46668439 46668500 -156417032 - MIR SINE MIR -6 256 195 381 357 20 20 chr5 46668536 46668725 -156416807 + L2 LINE L2 2546 2734 -580 337 320 21 0 chr5 46668725 46668822 -156416710 - MER91B DNA MER1_type 0 190 92 374 276 8 82 chr5 46668838 46668972 -156416560 - MER91B DNA MER1_type -63 127 4 587 248 270 13 chr5 46668974 46669013 -156416519 + L2 LINE L2 2724 2752 -561 1990 50 4 23 chr5 46669013 46669297 -156416235 + L1PA4 LINE L1 5889 6167 0 587 248 270 13 chr5 46669297 46669676 -156415856 + L2 LINE L2 2752 3313 0 657 299 28 31 chr5 46670286 46670540 -156414992 - MIR SINE MIR -8 254 2 231 291 119 37 chr5 46670749 46670883 -156414649 + MIR SINE MIR 2 146 -116 1809 110 100 7 chr5 46671183 46671464 -156414068 - AluSq SINE Alu -6 307 1 1801 111 100 7 chr5 46672002 46672282 -156413250 - AluSq SINE Alu -7 306 1 355 127 48 16 chr5 46672513 46672576 -156412956 + L2 LINE L2 3241 3305 -8 241 211 18 0 chr5 46673272 46673391 -156412141 + GA-rich Low_complexity Low_complexity 1 121 0 255 114 0 0 chr5 46674971 46675015 -156410517 + (GA)n Simple_repeat Simple_repeat 1 44 0 409 314 129 33 chr5 46675463 46675673 -156409859 - L1ME1 LINE L1 -7 6159 5930 780 180 60 9 chr5 46675745 46675962 -156409570 + Charlie5 DNA MER1_type 2357 2584 -28 352 318 53 69 chr5 46676053 46676242 -156409290 + L2 LINE L2 3082 3267 -5 238 267 69 15 chr5 46676286 46676417 -156409115 + L1ME LINE L1 5690 5827 -294 3232 203 49 38 chr5 46676419 46677223 -156408309 + L1M3 LINE L1 3985 4802 -1344 1789 173 7 0 chr5 46677223 46677523 -156408009 + AluJb SINE Alu 1 302 -10 3232 203 49 38 chr5 46677523 46677631 -156407901 + L1M3 LINE L1 4802 4907 -1239 39888 61 3 1 chr5 46677701 46683823 -156401709 + L1PA5 LINE L1 11 6148 -6 3786 182 20 61 chr5 46683823 46684421 -156401111 - L1MA9 LINE L1 -73 6239 5713 841 135 7 7 chr5 46684421 46684562 -156400970 - L1PB3 LINE L1 0 6154 6014 3786 182 20 61 chr5 46684562 46685134 -156400398 - L1MA9 LINE L1 -599 5713 5119 1788 197 26 36 chr5 46685153 46685420 -156400112 + L1M3 LINE L1 4892 5160 -1023 972 148 62 6 chr5 46685420 46685596 -156399936 + L1PA16 LINE L1 5979 6164 -2 1788 197 26 36 chr5 46685596 46685929 -156399603 + L1M3 LINE L1 5160 5486 -697 * 1948 201 76 4 chr5 46685926 46686438 -156399094 + L1 LINE L1 4288 4836 -1310 483 141 22 0 chr5 46686450 46686542 -156398990 + L1MB2 LINE L1 6074 6167 -4 281 208 218 41 chr5 46686572 46686710 -156398822 + L1ME4a LINE L1 5819 5931 -190 1722 128 51 90 chr5 46686710 46687100 -156398432 - THE1C LTR MaLR 0 375 1 281 208 218 41 chr5 46687100 46687158 -156398374 + L1ME4a LINE L1 5931 6050 -71 4062 155 39 4 chr5 46687211 46687939 -156397593 - L1PA15 LINE L1 0 6165 5413 21 0 0 0 chr5 46687951 46687972 -156397560 + AT_rich Low_complexity Low_complexity 1 21 0 363 286 137 9 chr5 46689008 46689235 -156396297 + MER112 DNA MER1_type 1 256 0 441 0 0 0 chr5 46689409 46689458 -156396074 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr5 46690264 46690286 -156395246 + AT_rich Low_complexity Low_complexity 1 22 0 3932 153 138 29 chr5 46690287 46691439 -156394093 + L1PA16 LINE L1 4200 5226 -940 188 0 74 0 chr5 46691439 46691466 -156394066 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3932 153 138 29 chr5 46691466 46691757 -156393775 + L1PA16 LINE L1 5226 5484 -682 216 0 0 0 chr5 46691757 46691781 -156393751 + (CA)n Simple_repeat Simple_repeat 2 25 0 3932 153 138 29 chr5 46691781 46691797 -156393735 + L1PA16 LINE L1 5484 5497 -669 1958 126 105 18 chr5 46691797 46692131 -156393401 + THE1B LTR MaLR 2 364 0 3932 153 138 29 chr5 46692131 46692425 -156393107 + L1PA16 LINE L1 5497 6162 -4 289 193 0 0 chr5 46692662 46692719 -156392813 - AluJo SINE Alu -1 301 245 576 253 0 32 chr5 46692719 46692873 -156392659 - AluJo SINE Alu -143 169 21 261 148 65 0 chr5 46692886 46692940 -156392592 - FLAM SINE Alu -8 125 78 321 289 128 45 chr5 46692989 46693145 -156392387 - MER5A DNA MER1_type 0 189 21 207 388 0 0 chr5 46693299 46693366 -156392166 - L2 LINE L2 -92 3180 3114 196 339 36 0 chr5 46693387 46693443 -156392089 + MER5A DNA MER1_type 43 100 -89 232 301 36 24 chr5 46693632 46693715 -156391817 - L2 LINE L2 -378 2935 2852 201 214 54 18 chr5 46693758 46693814 -156391718 - L2 LINE L2 -1 3312 3255 352 96 100 19 chr5 46694119 46694217 -156391315 - L1PA16 LINE L1 -233 5898 5793 397 143 0 0 chr5 46694227 46694290 -156391242 - THE1A LTR MaLR 0 355 293 1133 250 87 70 chr5 46695220 46695827 -156389705 - L2 LINE L2 0 3313 2687 2262 106 3 3 chr5 46696291 46696592 -156388940 - AluSg SINE Alu -9 301 1 2013 115 11 0 chr5 46696974 46697276 -156388256 + AluSx SINE Alu 1 305 0 282 283 80 29 chr5 46697832 46697970 -156387562 + L3b LINE CR1 1115 1259 -324 2076 147 0 3 chr5 46698227 46698534 -156386998 - AluSx SINE Alu -6 306 1 1157 223 90 10 chr5 46699277 46699577 -156385955 + MLT1H LTR MaLR 1 324 -225 2279 81 0 42 chr5 46699587 46699896 -156385636 + AluSc SINE Alu 1 296 -13 554 241 58 0 chr5 46699932 46700069 -156385463 + MLT1H LTR MaLR 405 549 0 536 310 30 30 chr5 46700504 46700701 -156384831 - MIR SINE MIR -16 246 50 680 281 86 31 chr5 46701056 46701348 -156384184 + MLT1J LTR MaLR 11 318 -193 25 65 0 0 chr5 46701550 46701596 -156383936 + AT_rich Low_complexity Low_complexity 1 46 0 296 264 22 44 chr5 46702506 46702597 -156382935 - MER5B DNA MER1_type 0 178 90 210 267 44 44 chr5 46702531 46702621 -156382911 + MER5A DNA MER1_type 37 126 -63 * 483 244 62 28 chr5 46705296 46705472 -156380060 - MER20B DNA MER1_type -595 188 7 473 313 21 7 chr5 46705952 46706096 -156379436 - MER5A DNA MER1_type 0 189 44 334 236 34 22 chr5 46706189 46706278 -156379254 - MER5A DNA MER1_type -55 134 45 25 0 0 0 chr5 46706358 46706383 -156379149 + AT_rich Low_complexity Low_complexity 1 25 0 1324 214 81 3 chr5 46707143 46707451 -156378081 + MLT1A1 LTR MaLR 6 337 -28 270 146 0 0 chr5 46707636 46707677 -156377855 + MLT1A1 LTR MaLR 325 365 0 40 0 0 0 chr5 46707945 46707985 -156377547 + AT_rich Low_complexity Low_complexity 1 40 0 1380 127 20 57 chr5 46708355 46708600 -156376932 - MER46A DNA MER2_type 0 236 1 568 251 21 10 chr5 46708786 46709044 -156376488 + MER46C DNA MER2_type 8 309 -29 2099 135 0 0 chr5 46709615 46709904 -156375628 - AluSx SINE Alu -18 294 6 283 261 63 9 chr5 46710850 46710961 -156374571 - MER104 DNA Tc2 -5 175 59 669 150 110 29 chr5 46711705 46711878 -156373654 + MLT1C LTR MaLR 65 251 -216 2185 108 0 7 chr5 46713193 46713488 -156372044 - AluSx SINE Alu -19 293 1 1341 132 5 10 chr5 46714081 46714269 -156371263 - AluSq SINE Alu -6 307 119 192 40 0 0 chr5 46714269 46714294 -156371238 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1341 132 5 10 chr5 46714294 46714309 -156371223 - AluSq SINE Alu -194 119 105 214 302 21 99 chr5 46714324 46714399 -156371133 + L2 LINE L2 1639 1718 -1596 2160 106 0 7 chr5 46714399 46714701 -156370831 + AluSx SINE Alu 6 305 -7 214 302 21 99 chr5 46714701 46714867 -156370665 + L2 LINE L2 1718 1861 -1453 271 209 75 0 chr5 46715126 46715193 -156370339 - MLT1H LTR MaLR 0 549 478 689 351 107 41 chr5 46715289 46716139 -156369393 + L2 LINE L2 1980 2885 -429 446 305 13 40 chr5 46716881 46717032 -156368500 + L2 LINE L2 3167 3313 0 738 237 96 19 chr5 46717486 46718157 -156367375 + L1ME3A LINE L1 5374 6170 0 21 0 0 0 chr5 46718220 46718241 -156367291 + AT_rich Low_complexity Low_complexity 1 21 0 211 368 28 19 chr5 46718485 46718591 -156366941 + L2 LINE L2 3123 3229 -43 216 143 0 0 chr5 46718621 46718663 -156366869 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 866 292 32 12 chr5 46718923 46719173 -156366359 + MIR SINE MIR 3 257 -5 280 280 21 0 chr5 46719185 46719278 -156366254 + L3b LINE CR1 1310 1404 -179 288 306 149 0 chr5 46719300 46719434 -156366098 - MIR3 SINE MIR -18 190 37 596 274 44 38 chr5 46719754 46719993 -156365539 + MIR SINE MIR 15 262 0 294 170 0 0 chr5 46720451 46720498 -156365034 - tRNA-Gly-GGA tRNA tRNA -28 47 1 408 175 10 58 chr5 46721214 46721317 -156364215 - L1PB4 LINE L1 0 6156 6059 309 313 88 48 chr5 46722410 46722557 -156362975 + MIR3 SINE MIR 34 186 -22 189 125 0 0 chr5 46722547 46722579 -156362953 + MIR SINE MIR 108 139 -123 * 2233 117 0 3 chr5 46722991 46723298 -156362234 - AluSp SINE Alu -7 306 1 427 329 100 4 chr5 46723994 46724225 -156361307 - MIR SINE MIR -8 254 2 495 302 59 12 chr5 46724420 46724589 -156360943 + MER5B DNA MER1_type 2 178 0 414 311 79 59 chr5 46724630 46724884 -156360648 + MIR SINE MIR 1 259 -3 183 261 0 0 chr5 46725486 46725532 -156360000 + L2 LINE L2 3137 3182 -90 515 294 51 23 chr5 46727539 46727716 -156357816 + MER5A DNA MER1_type 8 189 0 21 0 0 0 chr5 46728703 46728724 -156356808 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr5 46728818 46728840 -156356692 + AT_rich Low_complexity Low_complexity 1 22 0 43799 45 1 1 chr5 46728908 46735059 -156350473 - L1PA4 LINE L1 -3 6152 1 314 295 13 34 chr5 46735163 46735312 -156350220 + CT-rich Low_complexity Low_complexity 5 150 0 197 358 49 16 chr5 46735366 46735489 -156350043 - L2 LINE L2 -8 3264 3138 23 0 0 0 chr5 46735763 46735786 -156349746 + AT_rich Low_complexity Low_complexity 1 23 0 5780 159 15 7 chr5 46735791 46737573 -156347959 - L1PB3 LINE L1 -7 6147 4350 254 333 83 42 chr5 46737711 46737807 -156347725 + MIR3 SINE MIR 15 122 -86 2598 121 0 0 chr5 46737807 46738171 -156347361 + THE1B LTR MaLR 1 364 0 254 333 83 42 chr5 46738171 46738242 -156347290 + MIR3 SINE MIR 122 189 -19 1477 189 75 62 chr5 46738349 46738736 -156346796 + MSTD LTR MaLR 5 396 0 1541 142 6 119 chr5 46739125 46739462 -156346070 + AluJb SINE Alu 1 299 -3 217 208 0 21 chr5 46740596 46740644 -156344888 + MIR SINE MIR 95 141 -121 3841 248 68 29 chr5 46740910 46741310 -156344222 - L1MEc LINE L1 -4907 1489 1106 2023 143 0 0 chr5 46741310 46741611 -156343921 - AluSx SINE Alu -11 301 1 3841 248 68 29 chr5 46741611 46742611 -156342921 - L1MEc LINE L1 -5290 1106 35 454 296 61 58 chr5 46742777 46743138 -156342394 - MLT1J LTR MaLR -49 462 62 633 247 28 36 chr5 46744003 46744250 -156341282 - L1MC5 LINE L1 -13 7948 7704 252 217 77 84 chr5 46744277 46744382 -156341150 - L1MC5 LINE L1 -327 7634 7529 2567 56 0 3 chr5 46744382 46744684 -156340848 - AluY SINE Alu -10 301 1 252 217 77 84 chr5 46744684 46744721 -156340811 - L1MC5 LINE L1 -432 7529 7493 634 350 129 33 chr5 46745449 46746047 -156339485 - L3 LINE CR1 -89 1488 834 6871 47 1 2 chr5 46746057 46746901 -156338631 + L1PA7 LINE L1 5311 6153 -1 1762 252 53 31 chr5 46746912 46747424 -156338108 + L1M3e LINE L1 1 523 -6507 1832 231 138 2 chr5 46747458 46748067 -156337465 + L1M3e LINE L1 1830 2521 -4516 215 323 47 24 chr5 46748994 46749121 -156336411 - MIR SINE MIR -46 216 87 205 363 0 11 chr5 46750111 46750202 -156335330 + L2 LINE L2 3206 3295 -18 751 277 128 28 chr5 46750542 46750939 -156334593 + MLT1J LTR MaLR 6 442 -69 2632 179 37 7 chr5 46751367 46751825 -156333707 + MER70A LTR ERVL 1 472 0 388 315 18 59 chr5 46752305 46752527 -156333005 + Charlie8 DNA MER1_type 96 308 -2109 376 285 180 76 chr5 46753173 46753657 -156331875 - MLT1H LTR MaLR -14 535 2 556 296 58 27 chr5 46755868 46756196 -156329336 - L1ME LINE L1 -413 5749 5412 989 135 83 65 chr5 46756230 46756459 -156329073 - THE1C LTR MaLR 0 375 143 225 183 0 84 chr5 46756510 46756581 -156328951 - L1MEd LINE L1 -2161 3968 3904 302 289 83 25 chr5 46756624 46756866 -156328666 - L1MEd LINE L1 -2301 3828 3573 1575 116 107 77 chr5 46756876 46757203 -156328329 + MER1B DNA MER1_type 1 337 0 376 252 92 38 chr5 46757223 46757485 -156328047 - L1MEd LINE L1 -2613 3516 3241 423 293 37 37 chr5 46757696 46757990 -156327542 - L1MEd LINE L1 -3152 2977 2684 276 323 48 0 chr5 46758348 46758534 -156326998 - L1MEd LINE L1 -3600 2529 2335 578 179 77 0 chr5 46758610 46758727 -156326805 - L1PB4 LINE L1 -19 6137 6012 570 284 40 36 chr5 46758949 46759250 -156326282 - L1MEd LINE L1 -841 1649 1405 2045 114 4 0 chr5 46759290 46759570 -156325962 - AluSq SINE Alu -32 281 1 568 301 98 57 chr5 46759570 46760176 -156325356 - L1MEd LINE L1 -4872 1247 682 5651 153 17 2 chr5 46760812 46761765 -156323767 - L1MC2 LINE L1 -23 6321 5355 271 292 58 8 chr5 46761759 46761879 -156323653 + L1MC4a LINE L1 5609 5734 -387 * 333 0 0 0 chr5 46761912 46761949 -156323583 + (GA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr5 46762195 46762218 -156323314 + AT_rich Low_complexity Low_complexity 1 23 0 5214 102 12 9 chr5 46762220 46762998 -156322534 - L1PB2 LINE L1 -7 6144 5365 238 69 0 0 chr5 46762998 46763027 -156322505 - U2 snRNA snRNA -153 35 7 4912 195 11 57 chr5 46763035 46763639 -156321893 - L1PB2 LINE L1 -769 5377 4747 2278 85 0 14 chr5 46763639 46763933 -156321599 - AluY SINE Alu -19 292 3 4912 195 11 57 chr5 46763933 46764355 -156321177 - L1PB2 LINE L1 -1399 4747 4422 297 0 0 0 chr5 46764355 46764388 -156321144 + (CA)n Simple_repeat Simple_repeat 2 34 0 4912 195 11 57 chr5 46764388 46764675 -156320857 - L1PB2 LINE L1 -1724 4422 4123 804 246 48 68 chr5 46765004 46765402 -156320130 - MLT1B LTR MaLR 0 390 1 264 286 18 9 chr5 46765458 46765570 -156319962 + L1MC4a LINE L1 5820 5932 -1876 1991 105 4 8 chr5 46765852 46766119 -156319413 - AluSx SINE Alu -18 294 29 293 250 38 0 chr5 46766464 46766544 -156318988 + CT-rich Low_complexity Low_complexity 4 86 0 977 266 44 12 chr5 46766955 46767275 -156318257 + HERV16 LTR ERVL 963 1292 -3704 1142 283 95 41 chr5 46767343 46768499 -156317033 + HERV16 LTR ERVL 1689 2924 -2072 941 308 86 15 chr5 46769485 46769881 -156315651 + LTR16B LTR ERVL 35 458 -6 479 357 77 12 chr5 46769897 46770222 -156315310 - L1MEc LINE L1 -4131 2265 1920 285 300 37 45 chr5 46770339 46770582 -156314950 - L1MEc LINE L1 -4653 1743 1503 302 91 18 0 chr5 46770641 46770696 -156314836 + (TTTTTG)n Simple_repeat Simple_repeat 6 61 0 259 287 120 5 chr5 46771274 46771483 -156314049 - L1MEc LINE L1 -4971 1234 1002 289 320 13 0 chr5 46772671 46772749 -156312783 - L3 LINE CR1 -621 956 878 2300 117 0 0 chr5 46773466 46773775 -156311757 + AluSx SINE Alu 3 311 -1 343 229 42 110 chr5 46774251 46774297 -156311235 + MIR SINE MIR 21 69 -139 2051 157 0 0 chr5 46774297 46774603 -156310929 - AluSx SINE Alu -6 306 1 343 229 42 110 chr5 46774603 46774674 -156310858 + MIR SINE MIR 69 130 -78 627 311 250 11 chr5 46774713 46775093 -156310439 + L2 LINE L2 2434 2904 -410 2101 122 3 35 chr5 46775153 46775472 -156310060 - AluSc SINE Alu 0 309 1 285 29 0 0 chr5 46775528 46775563 -156309969 - tRNA-Cys-TGC tRNA tRNA -38 37 3 269 240 260 20 chr5 46775674 46775774 -156309758 - L2 LINE L2 -37 3276 3153 278 298 24 0 chr5 46775872 46775956 -156309576 + L2 LINE L2 3187 3272 0 825 136 0 8 chr5 46776052 46776184 -156309348 + FLAM_C SINE Alu 2 132 -1 534 138 73 24 chr5 46776921 46777044 -156308488 - L1MB7 LINE L1 0 6184 6056 2150 121 0 31 chr5 46777354 46777676 -156307856 - AluSx SINE Alu 0 312 1 1053 264 122 81 chr5 46777822 46778505 -156307027 - MER50 LTR ERV1 -23 711 1 462 344 40 54 chr5 46778759 46779108 -156306424 + L2 LINE L2 2876 3219 -94 678 205 0 8 chr5 46779261 46779383 -156306149 - FLAM_A SINE Alu -12 121 1 182 360 82 20 chr5 46779645 46779792 -156305740 + L2 LINE L2 2338 2493 -821 556 300 17 6 chr5 46781351 46781531 -156304001 + MIR SINE MIR 81 262 0 397 303 9 9 chr5 46782374 46782483 -156303049 - MER5B DNA MER1_type -68 110 2 1682 222 4 27 chr5 46783177 46783640 -156301892 + MLT1D LTR MaLR 1 497 -8 423 203 34 0 chr5 46784722 46784840 -156300692 - L1MC4 LINE L1 -2 8040 7919 306 172 0 43 chr5 46784840 46784933 -156300599 + CT-rich Low_complexity Low_complexity 3 91 0 32 0 0 0 chr5 46784942 46784974 -156300558 + AT_rich Low_complexity Low_complexity 1 32 0 404 306 8 0 chr5 46785034 46785155 -156300377 - L1MC4 LINE L1 -124 7918 7797 2117 278 18 5 chr5 46785155 46785724 -156299808 - MLT1G LTR MaLR 0 590 15 353 329 42 18 chr5 46785799 46785966 -156299566 + MIR SINE MIR 32 202 -60 197 95 0 24 chr5 46786346 46786388 -156299144 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 6315 78 8 2 chr5 46786390 46786735 -156298797 - L1PB1 LINE L1 -13 6138 5797 225 0 0 0 chr5 46786735 46786760 -156298772 + (TA)n Simple_repeat Simple_repeat 2 26 0 6315 78 8 2 chr5 46786760 46787646 -156297886 - L1PB1 LINE L1 -354 5797 4896 840 286 60 20 chr5 46787676 46788025 -156297507 - MLT1L LTR MaLR -18 597 235 2475 57 3 0 chr5 46788306 46788605 -156296927 - AluY SINE Alu -11 300 1 765 279 69 28 chr5 46789146 46789537 -156295995 - MLT1I LTR MaLR -2 407 1 195 42 0 0 chr5 46790238 46790262 -156295270 + (TAA)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr5 46790328 46790351 -156295181 + AT_rich Low_complexity Low_complexity 1 23 0 365 259 103 17 chr5 46790351 46790467 -156295065 - MIR SINE MIR -66 196 71 239 152 22 0 chr5 46790684 46790730 -156294802 + L2 LINE L2 3226 3272 0 7611 25 16 2 chr5 46791094 46792269 -156293263 - L1PA3 LINE L1 0 6155 4972 4777 63 23 1 chr5 46795442 46796140 -156289392 - L1P LINE L1 -1017 5129 4417 4527 31 2 0 chr5 46796140 46796712 -156288820 + L1P LINE L1 3842 4414 -1732 386 254 112 6 chr5 46796724 46796893 -156288639 - L1ME4a LINE L1 -266 5855 5669 1220 98 0 0 chr5 46798002 46798175 -156287357 - MER51B LTR ERV1 -157 220 48 472 134 0 82 chr5 46798164 46798261 -156287271 - MER51A LTR ERV1 -545 89 1 * 1031 223 72 36 chr5 46798263 46798576 -156286956 + MLT1C LTR MaLR 132 379 -11 4157 134 20 33 chr5 46799047 46799783 -156285749 - LTR8A LTR ERV1 0 727 1 718 246 28 17 chr5 46800571 46800750 -156284782 + MER5A DNA MER1_type 9 189 0 623 251 0 59 chr5 46801098 46801317 -156284215 + L2 LINE L2 3103 3308 -5 206 32 32 0 chr5 46802080 46802111 -156283421 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr5 46802364 46802387 -156283145 + AT_rich Low_complexity Low_complexity 1 23 0 634 290 54 9 chr5 46802419 46802640 -156282892 - MIR SINE MIR -12 250 20 1868 177 3 0 chr5 46803183 46803482 -156282050 - AluJo SINE Alu -12 300 1 3783 122 9 40 chr5 46803494 46804125 -156281407 - L1PA15 LINE L1 0 6165 5554 546 281 72 48 chr5 46806834 46807293 -156278239 + L1ME4a LINE L1 5457 5926 -195 305 204 131 36 chr5 46807927 46808064 -156277468 + L1ME4a LINE L1 5956 6105 -16 1453 310 87 62 chr5 46809202 46809522 -156276010 - L2 LINE L2 -1 3271 2960 2140 122 3 3 chr5 46809522 46809817 -156275715 + AluSg SINE Alu 1 295 -15 1453 310 87 62 chr5 46809817 46810830 -156274702 - L2 LINE L2 -312 2960 1888 226 250 0 18 chr5 46810927 46810966 -156274566 + GA-rich Low_complexity Low_complexity 1 40 -15 204 40 0 0 chr5 46810966 46810991 -156274541 + (GGAGA)n Simple_repeat Simple_repeat 4 28 0 226 250 0 18 chr5 46810991 46811007 -156274525 + GA-rich Low_complexity Low_complexity 40 55 0 207 239 98 22 chr5 46811110 46811202 -156274330 - L2 LINE L2 -204 3068 2970 1415 166 6 131 chr5 46814326 46814670 -156270862 + AluJb SINE Alu 2 302 0 736 235 83 51 chr5 46816326 46816543 -156268989 - MER58A DNA MER1_type 0 224 1 761 271 59 0 chr5 46816556 46816726 -156268806 + MER5A DNA MER1_type 6 185 -4 331 309 10 0 chr5 46817716 46817813 -156267719 + (TA)n Simple_repeat Simple_repeat 2 99 0 188 317 0 0 chr5 46818289 46818349 -156267183 + MIR SINE MIR 166 225 -37 493 286 18 13 chr5 46818809 46818954 -156266578 - MIR SINE MIR -62 146 26 220 226 157 59 chr5 46820980 46821082 -156264450 - MIR SINE MIR -2 260 149 197 184 0 26 chr5 46821532 46821570 -156263962 - MIR SINE MIR -77 185 149 463 265 30 24 chr5 46822478 46822644 -156262888 + Charlie7 DNA MER1_type 370 536 -2076 2167 123 0 3 chr5 46822711 46823011 -156262521 - AluSg SINE Alu -11 299 1 222 222 0 0 chr5 46823489 46823543 -156261989 + GA-rich Low_complexity Low_complexity 3 56 0 1791 271 126 18 chr5 46824229 46825000 -156260532 - L1ME3A LINE L1 -4 6166 5313 445 376 96 0 chr5 46825061 46825279 -156260253 - MIR SINE MIR 0 262 24 858 182 10 0 chr5 46825758 46825911 -156259621 + MIR SINE MIR 104 257 -5 298 297 245 19 chr5 46825934 46826089 -156259443 - L2 LINE L2 0 3313 3124 264 290 0 10 chr5 46826317 46826417 -156259115 - HAL1b LINE L1 -600 748 650 22 56 0 0 chr5 46826433 46826469 -156259063 + AT_rich Low_complexity Low_complexity 1 36 0 7846 138 22 2 chr5 46826972 46828244 -156257288 + HSMAR2 DNA Mariner 5 1301 -1 276 130 0 0 chr5 46828703 46828749 -156256783 + (CA)n Simple_repeat Simple_repeat 2 47 0 2043 142 132 5 chr5 46828900 46829280 -156256252 - MSTA LTR MaLR 0 428 1 225 235 25 92 chr5 46829343 46829462 -156256070 - HAL1b LINE L1 -696 652 542 375 300 40 40 chr5 46829480 46829630 -156255902 - HAL1b LINE L1 -1104 244 95 32 26 0 0 chr5 46829683 46829722 -156255810 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr5 46829734 46829757 -156255775 + AT_rich Low_complexity Low_complexity 1 23 0 219 217 87 0 chr5 46830101 46830170 -156255362 + L2 LINE L2 3133 3207 -106 322 338 83 51 chr5 46830432 46830746 -156254786 - L2 LINE L2 -633 2681 2358 292 229 104 10 chr5 46830878 46830974 -156254558 - L2 LINE L2 -966 2348 2244 245 354 129 36 chr5 46832235 46832761 -156252771 + L2 LINE L2 121 695 -2619 915 119 4 183 chr5 46834439 46834674 -156250858 - 7SK RNA RNA 0 193 1 197 128 0 26 chr5 46834755 46834794 -156250738 + (TATG)n Simple_repeat Simple_repeat 1 38 0 239 336 42 17 chr5 46836552 46836671 -156248861 + MIR3 SINE MIR 81 202 -6 353 235 0 0 chr5 46837192 46837260 -156248272 - L2 LINE L2 -56 3257 3190 2514 62 0 24 chr5 46887752 46888090 -156197442 + L1PA5 LINE L1 5821 6150 -4 2134 132 0 0 chr5 46888847 46889151 -156196381 - AluSg1 SINE Alu -4 305 2 806 220 50 0 chr5 46890070 46890229 -156195303 - MER45A DNA AcHobo -11 167 1 306 306 31 0 chr5 46891927 46892025 -156193507 - MIR3 SINE MIR -5 203 103 531 289 53 0 chr5 46892374 46892531 -156193001 + MIR SINE MIR 96 259 -3 2273 84 0 0 chr5 46892842 46893127 -156192405 - AluY SINE Alu -1 310 26 40215 71 6 9 chr5 46893443 46899185 -156186347 + L1P2 LINE L1 12 5756 -398 238 251 192 2 chr5 46900646 46900733 -156184799 - MIR SINE MIR -103 105 2 759 233 41 6 chr5 46901328 46901500 -156184032 + MER58A DNA MER1_type 35 212 -12 220 328 64 80 chr5 46902790 46903268 -156182264 + L2 LINE L2 2461 2926 -346 284 260 110 0 chr5 46904256 46904329 -156181203 - L2 LINE L2 -1 3271 3191 355 254 45 60 chr5 46904560 46904694 -156180838 - L2 LINE L2 -40 3273 3142 25 0 0 0 chr5 46906744 46906769 -156178763 + AT_rich Low_complexity Low_complexity 1 25 0 685 196 7 0 chr5 46906770 46906908 -156178624 - L1M4 LINE L1 -696 5488 5350 1104 158 99 10 chr5 46906930 46907132 -156178400 - L1PA16 LINE L1 -9 6157 5938 300 312 11 91 chr5 46907210 46907396 -156178136 - HAL1 LINE L1 -2 2505 2335 3108 184 115 58 chr5 46907501 46908098 -156177434 + MER106B DNA MER1_type 2 680 -379 2276 106 0 3 chr5 46908098 46908401 -156177131 + AluSx SINE Alu 7 308 -4 3108 184 115 58 chr5 46908401 46908793 -156176739 + MER106B DNA MER1_type 680 1048 -11 550 247 75 39 chr5 46909924 46910203 -156175329 - L1MC4 LINE L1 -243 7799 7511 869 105 44 77 chr5 46910245 46910426 -156175106 - L1MA8 LINE L1 -2 6289 6115 4280 162 30 17 chr5 46910440 46911279 -156174253 - L1MB8 LINE L1 -6 6408 5559 5456 34 1 1 chr5 46911279 46911930 -156173602 - L1PA4 LINE L1 -4 6151 5501 5174 39 2 0 chr5 46911930 46912705 -156172827 + L1P2 LINE L1 4761 5538 -617 3249 153 3 12 chr5 46912688 46913252 -156172280 - L1MA8 LINE L1 -166 6125 5567 * 7343 165 19 83 chr5 46913353 46915182 -156170350 - L1MB8 LINE L1 -816 5566 3855 866 117 15 29 chr5 46915182 46915319 -156170213 + AluSg/x SINE Alu 162 296 -14 2650 227 68 67 chr5 46915320 46916054 -156169478 - L1MB8 LINE L1 -2943 3439 2707 4082 165 82 59 chr5 46916054 46917097 -156168435 + MER11C LTR ERVK 1 1067 -4 3676 105 62 7 chr5 46916538 46917102 -156168430 + MER11A LTR ERVK 672 1266 0 2650 227 68 67 chr5 46917102 46917686 -156167846 - L1MB8 LINE L1 -3680 2702 2103 198 389 111 0 chr5 46919047 46919173 -156166359 + L2 LINE L2 3125 3264 -8 325 262 50 57 chr5 46919324 46919465 -156166067 + MIR SINE MIR 53 192 -70 261 75 0 0 chr5 46920529 46920569 -156164963 + (T)n Simple_repeat Simple_repeat 1 40 0 7828 16 0 0 chr5 46921269 46922602 -156162930 - L1PA2 LINE L1 -3 6152 4820 16811 29 0 0 chr5 46922602 46924622 -156160910 + L1PA2 LINE L1 2824 4843 -1303 667 205 149 96 chr5 46924831 46925153 -156160379 + MER63 DNA MER1_type 685 1023 -38 1690 118 40 139 chr5 46925161 46925290 -156160242 - L1MA4A LINE L1 -6 6297 6157 2103 125 3 3 chr5 46925290 46925602 -156159930 - AluSx SINE Alu 0 312 1 1690 118 40 139 chr5 46925602 46925896 -156159636 - L1MA4A LINE L1 -146 6157 5916 * 2882 129 75 2 chr5 46925886 46926376 -156159156 - L1M2 LINE L1 -4174 3035 2510 2281 252 94 82 chr5 46926371 46927478 -156158054 - L1M2 LINE L1 -5392 1817 686 * 240 276 0 17 chr5 46927508 46927566 -156157966 + MER63 DNA MER1_type 1005 1061 0 1989 135 16 32 chr5 46928320 46928697 -156156835 + THE1C LTR MaLR 1 371 -4 2236 172 35 53 chr5 46928942 46929493 -156156039 + L1MA7 LINE L1 5747 6287 -4 877 313 72 13 chr5 46929819 46930279 -156155253 + LTR16C LTR ERVL 1 487 -4 429 329 75 17 chr5 46930465 46930705 -156154827 - MIR SINE MIR -3 259 6 1347 239 19 63 chr5 46930992 46931436 -156154096 - L1M4 LINE L1 -2157 3989 3572 1807 127 35 0 chr5 46931436 46931695 -156153837 + AluSq SINE Alu 1 268 -45 1347 239 19 63 chr5 46931695 46931790 -156153742 - L1M4 LINE L1 -2574 3572 3474 816 257 30 48 chr5 46931783 46932163 -156153369 - L1 LINE L1 -2168 3978 3613 * 236 339 31 16 chr5 46932528 46932655 -156152877 - L1ME LINE L1 -5922 148 20 241 287 100 27 chr5 46932798 46932948 -156152584 + MLT1J LTR MaLR 348 508 -3 1264 191 25 110 chr5 46933357 46933676 -156151856 + L1 LINE L1 4125 4397 -1749 1942 81 0 4 chr5 46933676 46933923 -156151609 + AluY SINE Alu 54 299 -12 1264 191 25 110 chr5 46933923 46934047 -156151485 + L1 LINE L1 4397 4530 -1616 5198 132 49 0 chr5 46934049 46935485 -156150047 + L1PA16 LINE L1 4657 6157 -9 253 313 28 50 chr5 46936403 46936582 -156148950 + MIR3 SINE MIR 33 207 -1 315 254 28 111 chr5 46936702 46937027 -156148505 + MLT1I LTR MaLR 116 549 0 206 291 47 12 chr5 46937181 46937267 -156148265 - MIR SINE MIR -109 153 65 227 283 75 25 chr5 46937413 46937533 -156147999 - LTR67 LTR ERVL -46 511 386 4832 118 108 22 chr5 46938447 46939255 -156146277 + MER4D LTR ERV1 1 877 -26 1479 295 41 23 chr5 46939385 46939900 -156145632 - L1MEc LINE L1 -5834 562 39 307 287 45 84 chr5 46940044 46940246 -156145286 + Tigger8 DNA MER2_type 462 655 -11 2341 92 0 16 chr5 46940307 46940613 -156144919 + AluY SINE Alu 1 301 -10 2137 112 10 0 chr5 46941268 46941562 -156143970 + AluSx SINE Alu 1 297 -15 2163 8 0 4 chr5 46942240 46942489 -156143043 - L1PA2 LINE L1 -263 5892 5645 1199 28 0 0 chr5 46942489 46942632 -156142900 + L1PA2 LINE L1 6013 6155 0 3175 143 30 6 chr5 46943213 46943753 -156141779 - L1PA15 LINE L1 0 6165 5613 706 306 86 17 chr5 46943821 46944112 -156141420 + L2 LINE L2 1400 1710 -1604 22 35 0 0 chr5 46944131 46944160 -156141372 + AT_rich Low_complexity Low_complexity 1 29 0 1907 121 63 30 chr5 46944844 46945207 -156140325 - THE1C LTR MaLR 0 375 1 224 30 30 0 chr5 46946441 46946474 -156139058 + (CA)n Simple_repeat Simple_repeat 2 35 0 2237 100 0 16 chr5 46946684 46946993 -156138539 + AluSp SINE Alu 6 309 -4 354 165 11 22 chr5 46948231 46948322 -156137210 + CT-rich Low_complexity Low_complexity 2 91 0 183 299 194 0 chr5 46951117 46951184 -156134348 + MER5B DNA MER1_type 56 135 -43 315 340 58 58 chr5 46952110 46952301 -156133231 + MIR3 SINE MIR 18 208 0 278 365 19 0 chr5 46952788 46952895 -156132637 + MIR3 SINE MIR 93 201 -7 184 305 122 15 chr5 46953098 46953229 -156132303 + L2 LINE L2 3165 3309 -4 1380 263 111 23 chr5 46953598 46954085 -156131447 + MLT1H1 LTR MaLR 26 555 0 263 385 101 44 chr5 46954575 46954983 -156130549 - L2 LINE L2 -4 3268 2838 463 160 9 57 chr5 46955919 46956025 -156129507 + FLAM_A SINE Alu 36 136 -6 525 296 13 7 chr5 46957702 46957854 -156127678 - MIR SINE MIR -10 252 100 273 356 23 23 chr5 46958973 46959105 -156126427 + MER5A DNA MER1_type 2 133 -56 1999 121 0 53 chr5 46959110 46959433 -156126099 - AluY SINE Alu -5 306 1 277 268 18 18 chr5 46959736 46959848 -156125684 - L1P LINE L1 -1131 5015 4904 232 287 89 10 chr5 46960140 46960241 -156125291 + L2 LINE L2 1913 2021 -1293 312 135 19 0 chr5 46960276 46960328 -156125204 - MLT1J2 LTR MaLR -48 402 350 619 276 92 0 chr5 46960397 46960582 -156124950 - MLT1J1 LTR MaLR -242 204 3 924 348 111 42 chr5 46960589 46961696 -156123836 + L2 LINE L2 2035 3210 -62 875 302 19 34 chr5 46962430 46962751 -156122781 + LTR16A LTR ERVL 109 424 -26 185 289 92 0 chr5 46964927 46965003 -156120529 + MIR SINE MIR 2 84 -178 1027 244 61 75 chr5 46965658 46966084 -156119448 - MLT1J LTR MaLR -23 488 69 2248 102 26 0 chr5 46966722 46967027 -156118505 - AluSp SINE Alu 0 313 1 1893 88 42 33 chr5 46967363 46967669 -156117863 + THE1C LTR MaLR 3 311 -64 324 0 0 0 chr5 46970045 46970081 -156115451 + (TG)n Simple_repeat Simple_repeat 2 37 0 294 378 63 0 chr5 46970761 46970888 -156114644 + L2 LINE L2 3136 3270 -2 2136 128 0 0 chr5 46973408 46973704 -156111828 - AluSx SINE Alu -16 296 1 252 323 83 23 chr5 46974442 46974575 -156110957 + L2 LINE L2 3173 3313 0 724 321 123 65 chr5 46975107 46976046 -156109486 + L2 LINE L2 2288 3272 0 5007 192 238 37 chr5 46976149 46977534 -156107998 - MER52A LTR ERV1 0 1755 1 2684 153 23 40 chr5 46978898 46979454 -156106078 + L1MA7 LINE L1 5743 6289 -2 381 22 0 0 chr5 46980481 46980527 -156105005 + (A)n Simple_repeat Simple_repeat 1 46 0 22 0 0 0 chr5 46980788 46980810 -156104722 + AT_rich Low_complexity Low_complexity 1 22 0 260 318 82 0 chr5 46981642 46981752 -156103780 - L1MEd LINE L1 -5941 178 60 1770 112 89 104 chr5 46981752 46982146 -156103386 + MLT1B LTR MaLR 1 388 -2 231 269 0 0 chr5 46982853 46982905 -156102627 + GA-rich Low_complexity Low_complexity 3 54 0 225 275 14 0 chr5 46983160 46983229 -156102303 + GA-rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr5 46984228 46984250 -156101282 + AT_rich Low_complexity Low_complexity 1 22 0 253 158 35 0 chr5 46984646 46984688 -156100844 - HSMAR1 DNA Mariner 0 1287 1241 189 0 0 0 chr5 46984688 46984709 -156100823 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 253 158 35 0 chr5 46984709 46984723 -156100809 - HSMAR1 DNA Mariner -46 1241 1229 1736 83 91 51 chr5 46984723 46984999 -156100533 - AluY SINE Alu -24 287 1 388 138 0 31 chr5 46985228 46985293 -156100239 - LTR3b LTR ERVK 0 500 438 1835 175 47 44 chr5 46985293 46985721 -156099811 - LTR3 LTR ERVK 0 429 1 285 163 0 0 chr5 46985736 46985785 -156099747 - HERVK14 LTR ERVK -61 5884 5836 * 2140 193 17 10 chr5 46985776 46986186 -156099346 - HERVK3 LTR ERVK -4967 2276 1864 303 111 0 111 chr5 46986186 46986249 -156099283 - HERVK3 LTR ERVK -5867 1376 1321 * 402 260 0 29 chr5 46986237 46986341 -156099191 - HERVK3 LTR ERVK -6563 680 580 769 199 92 15 chr5 46986407 46986603 -156098929 - HERVK3 LTR ERVK -6978 265 55 431 151 123 0 chr5 46986912 46986985 -156098547 - LTR3b LTR ERVK 0 500 419 2059 122 14 3 chr5 46986994 46987290 -156098242 - LTR3b LTR ERVK -17 483 185 400 169 0 0 chr5 46987338 46987403 -156098129 - Tigger5 DNA MER2_type -2244 79 15 372 202 30 71 chr5 46987435 46987469 -156098063 - MIR SINE MIR -65 197 163 2817 209 16 5 chr5 46987469 46988025 -156097507 + MER68 LTR ERV1 1 562 0 372 202 30 71 chr5 46988025 46988089 -156097443 - MIR SINE MIR -99 163 103 289 263 0 25 chr5 46988373 46988453 -156097079 + MIR SINE MIR 74 151 -111 243 382 18 0 chr5 46988619 46988729 -156096803 + MIR SINE MIR 28 139 -123 21 0 0 0 chr5 46988917 46988938 -156096594 + AT_rich Low_complexity Low_complexity 1 21 0 1880 154 133 16 chr5 46989944 46990327 -156095205 - MSTA LTR MaLR 0 428 1 2328 172 7 7 chr5 46990327 46990770 -156094762 + L1MB3 LINE L1 5741 6183 0 345 47 0 0 chr5 46990954 46990997 -156094535 + (GA)n Simple_repeat Simple_repeat 1 43 0 2038 99 40 0 chr5 46991886 46992185 -156093347 + AluSx SINE Alu 1 310 0 261 139 0 0 chr5 46992350 46992393 -156093139 + (A)n Simple_repeat Simple_repeat 1 43 0 292 219 110 0 chr5 46992458 46992540 -156092992 + MIR SINE MIR 115 205 -57 184 307 158 39 chr5 46993413 46993540 -156091992 + L2 LINE L2 3172 3313 0 1549 154 48 6 chr5 46994015 46994327 -156091205 - L1MB2 LINE L1 0 6171 5847 308 344 23 23 chr5 46994573 46994704 -156090828 + MIR3 SINE MIR 11 141 -67 32 26 0 0 chr5 46994775 46994814 -156090718 + AT_rich Low_complexity Low_complexity 1 39 0 1010 125 6 6 chr5 46994820 46994988 -156090544 + L1MB3 LINE L1 6015 6182 -1 220 282 94 34 chr5 46995198 46995315 -156090217 - MIR SINE MIR -46 216 93 246 62 0 0 chr5 46995488 46995520 -156090012 + (CA)n Simple_repeat Simple_repeat 2 33 0 24 32 0 0 chr5 46996164 46996195 -156089337 + AT_rich Low_complexity Low_complexity 1 31 0 535 290 34 23 chr5 46996306 46996482 -156089050 - MIR SINE MIR -4 258 81 215 346 138 31 chr5 46996477 46996607 -156088925 - L3 LINE CR1 -8 1569 1426 * 581 366 28 16 chr5 46996809 46997131 -156088401 - L3 LINE CR1 -412 1165 840 386 305 105 21 chr5 46997978 46998168 -156087364 - MIR SINE MIR -11 251 46 549 298 174 26 chr5 46998689 46999115 -156086417 - L2 LINE L2 -11 3302 2814 27 0 0 0 chr5 46999142 46999169 -156086363 + AT_rich Low_complexity Low_complexity 1 27 0 44184 36 1 4 chr5 46999169 47005338 -156080194 - L1PA3 LINE L1 -3 6152 2 904 164 20 0 chr5 47005341 47005493 -156080039 - FRAM SINE Alu -5 171 17 1346 337 45 30 chr5 47005493 47006199 -156079333 - L2 LINE L2 -570 2744 2028 2641 265 95 67 chr5 47006202 47008494 -156077038 + L1MB1 LINE L1 1 1979 -3993 11745 202 41 19 chr5 47008526 47011228 -156074304 + L1MB1 LINE L1 2045 4857 -1135 2931 173 38 12 chr5 47011228 47011811 -156073721 + L1PB4 LINE L1 5547 6144 -12 11745 202 41 19 chr5 47011811 47012973 -156072559 + L1MB1 LINE L1 4857 5992 0 1285 301 94 16 chr5 47012979 47013607 -156071925 - L2 LINE L2 -1284 2030 1354 197 108 27 0 chr5 47013627 47013664 -156071868 + (TG)n Simple_repeat Simple_repeat 1 38 0 976 344 33 9 chr5 47013744 47014165 -156071367 - L2 LINE L2 -1913 1401 971 318 87 0 0 chr5 47015221 47015267 -156070265 + (TG)n Simple_repeat Simple_repeat 1 46 0 249 83 0 0 chr5 47016464 47016500 -156069032 + (TG)n Simple_repeat Simple_repeat 1 36 0 412 269 119 25 chr5 47017265 47017425 -156068107 - MER5A DNA MER1_type -6 183 9 349 278 8 53 chr5 47019717 47019850 -156065682 + MIR SINE MIR 95 221 -41 205 175 0 0 chr5 47020410 47020450 -156065082 + T-rich Low_complexity Low_complexity 2 41 0 274 272 81 36 chr5 47023532 47023691 -156061841 + MIR SINE MIR 35 203 -59 286 338 26 52 chr5 47024141 47024220 -156061312 + MIR3 SINE MIR 54 129 -79 2706 171 2 11 chr5 47024220 47024688 -156060844 - MLT2C2 LTR ERVL 0 464 1 286 338 26 52 chr5 47024688 47024762 -156060770 + MIR3 SINE MIR 129 203 -5 2110 70 0 4 chr5 47024843 47025102 -156060430 - AluY SINE Alu -53 258 1 24 32 0 0 chr5 47025702 47025733 -156059799 + AT_rich Low_complexity Low_complexity 1 31 0 208 279 82 74 chr5 47026333 47026455 -156059077 + L2 LINE L2 3166 3288 -25 220 221 211 29 chr5 47026472 47026576 -156058956 - L2 LINE L2 0 3313 3191 2838 158 14 0 chr5 47027027 47027519 -156058013 + L1MB3 LINE L1 5685 6183 0 2162 229 43 25 chr5 47027611 47028166 -156057366 - MER90 LTR ERV1 -10 565 1 22 80 0 0 chr5 47029220 47029270 -156056262 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr5 47029283 47029304 -156056228 + AT_rich Low_complexity Low_complexity 1 21 0 508 236 88 28 chr5 47029535 47029717 -156055815 - L1MC5 LINE L1 -48 7913 7721 901 87 0 0 chr5 47029944 47030059 -156055473 - AluSq/x SINE Alu -198 115 1 1948 141 14 0 chr5 47031340 47031630 -156053902 + AluSx SINE Alu 3 296 -16 35 54 0 0 chr5 47032793 47032849 -156052683 + AT_rich Low_complexity Low_complexity 1 56 0 315 0 0 0 chr5 47034687 47034722 -156050810 + (TG)n Simple_repeat Simple_repeat 1 35 0 360 239 188 24 chr5 47035166 47035379 -156050153 - LTR50 LTR ERVL -20 775 528 816 240 149 8 chr5 47035500 47035742 -156049790 - LTR50 LTR ERVL -517 278 3 2019 187 38 115 chr5 47035744 47036274 -156049258 + MLT1D LTR MaLR 1 489 -16 728 196 13 0 chr5 47036371 47036529 -156049003 + L1ME2 LINE L1 5336 5495 -669 1976 105 7 4 chr5 47036529 47036805 -156048727 - AluSq SINE Alu -8 305 29 3521 143 36 25 chr5 47036905 47037546 -156047986 - MER4E LTR ERV1 -118 648 1 518 250 29 15 chr5 47037546 47037682 -156047850 + MLT1C LTR MaLR 287 424 -43 338 222 0 50 chr5 47037684 47037783 -156047749 + L1ME2 LINE L1 5837 5930 -234 525 317 108 8 chr5 47037784 47038029 -156047503 + MLT1H LTR MaLR 11 282 -267 4116 125 6 11 chr5 47038029 47038453 -156047079 + MER41B LTR ERV1 1 423 -212 2184 135 30 25 chr5 47038453 47038815 -156046717 + THE1B LTR MaLR 1 364 0 4116 125 6 11 chr5 47038815 47039020 -156046512 + MER41B LTR ERV1 423 627 -8 549 288 62 10 chr5 47039028 47039253 -156046279 + MLT1H LTR MaLR 278 546 -3 1863 165 36 43 chr5 47039292 47039685 -156045847 + L1MA8 LINE L1 4658 5047 -1099 2195 122 99 18 chr5 47039686 47040079 -156045453 + MER4B LTR ERV1 1 425 -185 273 111 22 0 chr5 47040079 47040124 -156045408 + MADE1 DNA Mariner 1 46 -34 263 95 0 0 chr5 47040211 47040253 -156045279 + MADE1 DNA Mariner 35 76 -4 1272 113 11 0 chr5 47040257 47040442 -156045090 + MER4B LTR ERV1 424 610 0 4754 147 13 12 chr5 47040442 47041457 -156044075 + L1MA8 LINE L1 5045 6062 -229 543 232 48 77 chr5 47041458 47041665 -156043867 + L1ME2 LINE L1 5961 6161 -3 702 192 187 5 chr5 47041701 47041899 -156043633 + MER31B LTR ERV1 225 458 -8 21 0 0 0 chr5 47043747 47043768 -156041764 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr5 47043805 47043831 -156041701 + AT_rich Low_complexity Low_complexity 1 26 0 19250 38 2 5 chr5 47044604 47047766 -156037766 - L1PA4 LINE L1 0 6155 2999 1536 166 78 51 chr5 47047934 47048148 -156037384 - MLT1A1 LTR MaLR 0 365 137 2281 115 0 0 chr5 47048148 47048452 -156037080 - AluY SINE Alu -7 304 1 1536 166 78 51 chr5 47048452 47048569 -156036963 - MLT1A1 LTR MaLR -228 137 25 188 204 0 41 chr5 47048575 47048624 -156036908 + MIR SINE MIR 94 140 -68 231 233 49 14 chr5 47049395 47049514 -156036018 + MIR SINE MIR 47 208 -54 674 185 25 49 chr5 47050697 47050859 -156034673 - L1PB4 LINE L1 -1 6155 5998 5606 223 30 131 chr5 47051009 47053200 -156032332 - L1PA15-16 LINE L1 -4469 2380 415 4701 152 26 23 chr5 47053182 47054039 -156031493 + L1PA16 LINE L1 5308 6166 0 * 295 183 28 28 chr5 47054048 47054119 -156031413 - L1PA15-16 LINE L1 -6503 346 276 2861 219 28 56 chr5 47054123 47054978 -156030554 - L1 LINE L1 -1490 4656 3826 252 315 212 0 chr5 47054978 47055143 -156030389 + MIR SINE MIR 61 260 -2 306 191 56 56 chr5 47056006 47056095 -156029437 - L2 LINE L2 -65 3248 3160 239 299 81 0 chr5 47056133 47056220 -156029312 - L2 LINE L2 -277 3036 2943 2326 88 0 31 chr5 47057185 47057505 -156028027 + AluY SINE Alu 1 310 -1 187 313 62 0 chr5 47057700 47057780 -156027752 - MIR SINE MIR -27 235 151 1814 277 89 58 chr5 47058603 47058705 -156026827 - L2 LINE L2 -98 3215 3118 1244 227 102 21 chr5 47058705 47059137 -156026395 - MLT1C LTR MaLR 0 467 1 1814 277 89 58 chr5 47059137 47059670 -156025862 - L2 LINE L2 -195 3118 2540 1571 190 10 20 chr5 47059670 47059970 -156025562 - AluJb SINE Alu -10 302 6 1814 277 89 58 chr5 47059970 47060246 -156025286 - L2 LINE L2 -773 2540 2274 3138 47 0 0 chr5 47060374 47060759 -156024773 + L1PA4 LINE L1 5764 6148 -7 25 0 0 0 chr5 47060759 47060784 -156024748 + AT_rich Low_complexity Low_complexity 1 25 0 4384 170 9 9 chr5 47060784 47062034 -156023498 + L1PA13 LINE L1 4507 5754 -411 5874 163 44 7 chr5 47062058 47062132 -156023400 + L1PA13 LINE L1 4148 4218 -1945 1988 143 3 0 chr5 47062132 47062418 -156023114 - AluSx SINE Alu -23 289 3 5874 163 44 7 chr5 47062418 47063648 -156021884 + L1PA13 LINE L1 4218 5543 -620 250 78 20 20 chr5 47063648 47063699 -156021833 + (TA)n Simple_repeat Simple_repeat 1 51 0 5874 163 44 7 chr5 47063699 47064319 -156021213 + L1PA13 LINE L1 5543 6138 -25 1014 148 92 0 chr5 47064319 47064515 -156021017 + L1PA13 LINE L1 5948 6161 -2 35 0 0 0 chr5 47064621 47064656 -156020876 + AT_rich Low_complexity Low_complexity 1 35 0 2168 181 46 2 chr5 47064833 47065243 -156020289 + MSTA LTR MaLR 1 428 0 221 304 185 0 chr5 47066087 47066179 -156019353 - MIR SINE MIR -64 144 36 380 292 44 0 chr5 47066395 47066508 -156019024 + MIR SINE MIR 37 154 -108 4363 171 56 29 chr5 47066538 47066717 -156018815 - L1MA7 LINE L1 -2 6289 6116 2354 53 0 27 chr5 47066717 47067017 -156018515 - AluY SINE Alu -19 292 1 4363 171 56 29 chr5 47067017 47068242 -156017290 - L1MA7 LINE L1 -175 6116 4848 2207 161 60 60 chr5 47068248 47068864 -156016668 + L1MA7 LINE L1 4219 4834 -1312 402 38 0 0 chr5 47069130 47069183 -156016349 - MADE1 DNA Mariner -27 53 1 199 277 31 31 chr5 47071515 47071580 -156013952 + MIR SINE MIR 77 141 -67 395 227 116 12 chr5 47071589 47071761 -156013771 + L1MB3 LINE L1 5987 6176 -7 314 271 75 0 chr5 47071779 47071886 -156013646 + MIR SINE MIR 148 262 0 304 274 43 43 chr5 47072511 47072628 -156012904 - MIR3 SINE MIR -6 202 86 * 1527 340 88 17 chr5 47072627 47073819 -156011713 + L2 LINE L2 882 2158 -1156 4059 32 4 12 chr5 47073825 47074320 -156011212 + L1PA4 LINE L1 5662 6152 -3 200 349 47 9 chr5 47074352 47074458 -156011074 + L2 LINE L2 2403 2512 -802 200 222 130 19 chr5 47074458 47074512 -156011020 - L2 LINE L2 0 3313 3254 2040 126 7 29 chr5 47074772 47075082 -156010450 - AluSc SINE Alu -6 303 1 222 264 19 19 chr5 47075111 47075217 -156010315 + T-rich Low_complexity Low_complexity 2 107 0 41274 47 2 1 chr5 47075220 47081367 -156004165 - L1PA3 LINE L1 -3 6152 1 1130 141 40 80 chr5 47081423 47081699 -156003833 - MLT2C2 LTR ERVL -199 265 1 1815 173 0 0 chr5 47083912 47084190 -156001342 + AluSx SINE Alu 1 278 -34 368 123 0 15 chr5 47084195 47084260 -156001272 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 189 0 0 0 chr5 47084595 47084616 -156000916 + (AGATG)n Simple_repeat Simple_repeat 3 23 0 1342 241 60 42 chr5 47085696 47086148 -155999384 - MLT1C LTR MaLR -3 464 5 1306 220 0 20 chr5 47087736 47088036 -155997496 - MLT1A1 LTR MaLR 0 365 72 212 366 61 0 chr5 47088159 47088241 -155997291 - L2 LINE L2 -28 3285 3199 499 298 89 21 chr5 47090505 47090713 -155994819 + MIR SINE MIR 6 233 -29 308 311 31 52 chr5 47090713 47090906 -155994626 - MER5A DNA MER1_type 0 189 1 499 298 89 21 chr5 47090906 47090932 -155994600 + MIR SINE MIR 233 256 -6 245 305 0 0 chr5 47091154 47091213 -155994319 - L2 LINE L2 0 3313 3255 735 243 46 46 chr5 47091219 47091375 -155994157 + MER58A DNA MER1_type 6 164 -2256 1819 178 25 8 chr5 47091375 47091730 -155993802 - MLT1A1 LTR MaLR 0 365 5 735 243 46 46 chr5 47091730 47091791 -155993741 + MER58A DNA MER1_type 163 223 -1 226 195 0 65 chr5 47092054 47092131 -155993401 - LTR67 LTR ERVL -28 529 458 379 231 59 163 chr5 47092928 47093059 -155992473 - MIR SINE MIR -25 237 94 2374 106 0 0 chr5 47093059 47093361 -155992171 + AluSx SINE Alu 1 302 -10 379 231 59 163 chr5 47093361 47093378 -155992154 - MIR SINE MIR -168 94 77 2097 134 3 13 chr5 47093378 47093691 -155991841 + AluSq SINE Alu 1 310 -3 379 231 59 163 chr5 47093691 47093762 -155991770 - MIR SINE MIR -185 77 40 974 178 15 5 chr5 47094317 47094519 -155991013 - MER3 DNA MER1_type -5 204 1 255 336 25 34 chr5 47094534 47094653 -155990879 + MER5A DNA MER1_type 47 164 -25 255 326 143 0 chr5 47095092 47095190 -155990342 + L2 LINE L2 3187 3298 -15 662 294 49 46 chr5 47096010 47096360 -155989172 - LTR16A1 LTR ERVL 0 457 107 635 168 71 0 chr5 47097129 47097242 -155988290 - FLAM_C SINE Alu -8 125 5 4476 278 99 10 chr5 47097479 47099012 -155986520 + L2 LINE L2 1307 2975 -339 652 274 125 40 chr5 47099466 47099795 -155985737 + L2 LINE L2 2953 3309 -4 377 321 19 27 chr5 47100465 47100655 -155984877 + MIR SINE MIR 23 210 -52 22 80 0 0 chr5 47100771 47100821 -155984711 + AT_rich Low_complexity Low_complexity 1 50 0 1446 235 93 88 chr5 47101094 47101750 -155983782 + LTR41 LTR ERVL 1 663 -110 3636 103 0 8 chr5 47101750 47102265 -155983267 - MER9 LTR ERVK 0 511 1 1446 235 93 88 chr5 47102265 47102362 -155983170 + LTR41 LTR ERVL 663 758 -15 23 68 0 0 chr5 47102715 47102759 -155982773 + AT_rich Low_complexity Low_complexity 1 44 0 494 204 0 0 chr5 47102985 47103073 -155982459 - Tigger7 DNA MER2_type -2 2489 2402 1437 171 32 14 chr5 47103075 47103497 -155982035 - Tigger7 DNA MER2_type -1966 521 5 1392 244 52 14 chr5 47103498 47103863 -155981669 + MLT1C LTR MaLR 86 464 -3 225 343 57 0 chr5 47103863 47103933 -155981599 - L2 LINE L2 -39 3233 3160 300 53 0 0 chr5 47104173 47104211 -155981321 + (CA)n Simple_repeat Simple_repeat 2 39 0 2048 143 39 20 chr5 47104367 47104724 -155980808 + THE1B LTR MaLR 1 364 0 238 273 8 16 chr5 47105186 47105308 -155980224 + L1MD3 LINE L1 7904 8042 0 446 253 76 89 chr5 47105736 47105961 -155979571 + MLT1K LTR MaLR 344 565 -23 1768 199 215 11 chr5 47105989 47106538 -155978994 + LTR65 LTR ERV1 1 661 -8 405 260 167 0 chr5 47106711 47106861 -155978671 + MER5A DNA MER1_type 9 183 -6 212 169 0 34 chr5 47107472 47107531 -155978001 + GA-rich Low_complexity Low_complexity 5 61 0 1693 163 0 42 chr5 47107550 47107856 -155977676 + AluJo SINE Alu 19 311 -1 261 83 0 0 chr5 47110446 47110482 -155975050 + (A)n Simple_repeat Simple_repeat 1 36 0 24 0 0 0 chr5 47110764 47110788 -155974744 + AT_rich Low_complexity Low_complexity 1 24 0 597 148 119 45 chr5 47112056 47112232 -155973300 + MER53 DNA DNA 1 189 0 198 0 0 0 chr5 47114227 47114249 -155971283 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr5 47114935 47114957 -155970575 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr5 47115176 47115199 -155970333 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr5 47115302 47115327 -155970205 + AT_rich Low_complexity Low_complexity 1 25 0 27 73 0 0 chr5 47115824 47115879 -155969653 + AT_rich Low_complexity Low_complexity 1 55 0 1069 112 0 11 chr5 47116400 47116579 -155968953 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 294 328 69 23 chr5 47117973 47118104 -155967428 - L2 LINE L2 0 3272 3136 994 246 36 58 chr5 47118137 47118498 -155967034 - L2 LINE L2 -2 3311 2959 572 311 17 11 chr5 47118538 47118715 -155966817 - L2 LINE L2 -448 2866 2689 199 294 5 163 chr5 47118718 47118902 -155966630 - L2 LINE L2 -176 3096 2942 186 189 0 0 chr5 47119155 47119192 -155966340 + GA-rich Low_complexity Low_complexity 2 38 0 18189 166 50 15 chr5 47119311 47124335 -155961197 + L1MA1 LINE L1 15 4860 -2861 2524 46 0 13 chr5 47124335 47124638 -155960894 - AluY SINE Alu -12 299 1 18189 166 50 15 chr5 47124638 47126537 -155958995 + L1MA1 LINE L1 4860 7227 -494 2152 130 3 3 chr5 47126537 47126845 -155958687 + AluSc SINE Alu 1 308 -1 18189 166 50 15 chr5 47126845 47127359 -155958173 + L1MA1 LINE L1 7227 7721 0 878 361 107 12 chr5 47127371 47128063 -155957469 - L2 LINE L2 -553 2761 2004 714 186 83 0 chr5 47129269 47129414 -155956118 - MER106B DNA MER1_type -1 1058 902 2104 181 6 6 chr5 47129600 47129965 -155955567 - MLT1A1 LTR MaLR 0 365 1 239 217 0 0 chr5 47129994 47130040 -155955492 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 958 188 0 0 chr5 47131653 47131813 -155953719 - FRAM SINE Alu -16 160 1 446 255 268 0 chr5 47131933 47132086 -155953446 + MIR SINE MIR 32 225 -37 392 379 40 0 chr5 47132742 47132916 -155952616 + L2 LINE L2 2717 2897 -417 219 109 0 43 chr5 47132949 47132995 -155952537 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 555 240 104 0 chr5 47133159 47133284 -155952248 + L2 LINE L2 3134 3271 -1 49 90 0 0 chr5 47133602 47133735 -155951797 + AT_rich Low_complexity Low_complexity 1 133 0 17755 33 2 0 chr5 47134028 47136962 -155948570 + L1PA3 LINE L1 3228 6167 0 243 0 0 0 chr5 47136967 47136994 -155948538 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 351 343 0 10 chr5 47137819 47137918 -155947614 - L2 LINE L2 -3 3310 3213 261 281 146 0 chr5 47139528 47139617 -155945915 - L2 LINE L2 -2 3270 3169 467 305 90 0 chr5 47139902 47140069 -155945463 + MIR SINE MIR 20 201 -61 310 250 14 0 chr5 47140081 47140153 -155945379 + MIR SINE MIR 4 76 -186 1178 272 98 24 chr5 47140378 47140796 -155944736 + LTR16A LTR ERVL 1 448 -2 591 286 119 35 chr5 47142490 47142833 -155942699 - L3 LINE CR1 -240 1337 966 23 0 0 0 chr5 47148638 47148661 -155936871 + AT_rich Low_complexity Low_complexity 1 23 0 365 289 97 9 chr5 47148685 47148799 -155936733 - L2 LINE L2 -2 3270 3147 372 328 38 0 chr5 47149097 47149228 -155936304 - MIR3 SINE MIR -23 185 50 315 0 0 0 chr5 47149527 47149562 -155935970 + (CA)n Simple_repeat Simple_repeat 2 36 0 2345 96 0 3 chr5 47149709 47150022 -155935510 - AluSx SINE Alu 0 312 1 1712 150 50 47 chr5 47150022 47150393 -155935139 - L1MC2 LINE L1 -27 6317 5943 32 0 0 0 chr5 47150409 47150441 -155935091 + AT_rich Low_complexity Low_complexity 1 32 0 534 115 0 88 chr5 47150442 47150555 -155934977 - L1MB3 LINE L1 -28 6155 6053 * 2625 156 49 30 chr5 47150538 47151064 -155934468 - L1MC2 LINE L1 -384 5960 5425 291 28 0 0 chr5 47152476 47152512 -155933020 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 22 94 0 0 chr5 47154873 47154937 -155930595 + AT_rich Low_complexity Low_complexity 1 64 0 316 263 71 20 chr5 47155169 47155268 -155930264 + L2 LINE L2 3139 3242 -30 342 287 158 24 chr5 47155376 47155540 -155929992 + MIR3 SINE MIR 16 201 -7 263 344 46 58 chr5 47156013 47156272 -155929260 + L2 LINE L2 2807 3062 -210 184 341 45 11 chr5 47156273 47156361 -155929171 + L2 LINE L2 3163 3253 -19 2338 68 0 29 chr5 47156935 47157242 -155928290 - AluY SINE Alu -13 298 1 704 250 0 38 chr5 47157375 47157559 -155927973 - L2 LINE L2 -1 3312 3136 197 329 51 101 chr5 47157654 47157812 -155927720 + L2 LINE L2 3078 3227 -45 * 490 338 76 59 chr5 47157811 47158441 -155927091 + L2 LINE L2 1987 2627 -687 313 337 29 77 chr5 47158528 47158774 -155926758 + L2 LINE L2 2616 2849 -465 1891 116 0 4 chr5 47159860 47160128 -155925404 + AluSq SINE Alu 39 305 -8 705 280 64 4 chr5 47161900 47162136 -155923396 - MIR SINE MIR 0 262 13 2489 96 8 3 chr5 47162151 47162505 -155923027 - L1PB1 LINE L1 -1 6150 5795 5110 200 22 9 chr5 47162510 47163620 -155921912 - L1 LINE L1 -1947 4199 3076 7201 101 19 17 chr5 47163622 47165195 -155920337 - L1PBa LINE L1 -4512 2351 634 976 211 5 0 chr5 47165195 47165394 -155920138 - L1PBa LINE L1 -6663 200 1 452 356 35 11 chr5 47166148 47166358 -155919174 + MIR SINE MIR 8 220 -42 296 255 47 47 chr5 47166907 47167013 -155918519 - MIR SINE MIR -56 152 47 196 260 260 10 chr5 47167076 47167172 -155918360 + L2 LINE L2 3137 3256 -16 23 0 0 0 chr5 47167207 47167230 -155918302 + AT_rich Low_complexity Low_complexity 1 23 0 248 289 31 41 chr5 47167638 47167735 -155917797 + MARNA DNA Mariner 447 542 -44 1048 168 28 0 chr5 47167935 47168114 -155917418 + MER20 DNA MER1_type 36 219 0 360 0 0 0 chr5 47169750 47169790 -155915742 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1841 56 9 0 chr5 47169790 47170023 -155915509 - L1PA5 LINE L1 -12 6142 5908 221 250 18 0 chr5 47170414 47170470 -155915062 + (CA)n Simple_repeat Simple_repeat 2 58 0 5922 97 11 10 chr5 47170483 47171845 -155913687 - L1PA10 LINE L1 0 6168 4784 4172 124 0 94 chr5 47171850 47172658 -155912874 - L1PA10 LINE L1 -1548 4598 3867 1766 160 7 0 chr5 47173325 47173613 -155911919 - AluSx SINE Alu -22 290 1 595 186 17 0 chr5 47175114 47175232 -155910300 + MER90 LTR ERV1 2 121 -454 * 1433 234 45 9 chr5 47175231 47175568 -155909964 + MER90 LTR ERV1 266 614 0 203 229 82 66 chr5 47175988 47176049 -155909483 - MIR3 SINE MIR -39 169 108 198 0 0 0 chr5 47176111 47176133 -155909399 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 459 0 0 0 chr5 47176132 47176183 -155909349 + (CA)n Simple_repeat Simple_repeat 1 51 0 2228 227 79 60 chr5 47176498 47176595 -155908937 + MER72 LTR ERV1 1 95 -627 1865 150 0 0 chr5 47176595 47176861 -155908671 + AluSx SINE Alu 1 266 -46 197 0 71 0 chr5 47176868 47176896 -155908636 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2228 227 79 60 chr5 47176896 47177496 -155908036 + MER72 LTR ERV1 100 720 -2 186 143 0 0 chr5 47177513 47177548 -155907984 + (TTC)n Simple_repeat Simple_repeat 2 36 0 302 271 27 43 chr5 47178040 47178178 -155907354 + MER5A DNA MER1_type 44 172 -6 242 314 88 0 chr5 47178247 47178349 -155907183 + MIR SINE MIR 48 158 -104 253 291 13 0 chr5 47178358 47178437 -155907095 + (CATATA)n Simple_repeat Simple_repeat 1 80 0 327 130 0 0 chr5 47178971 47179025 -155906507 + (GA)n Simple_repeat Simple_repeat 2 55 0 436 257 9 26 chr5 47179247 47179360 -155906172 + MIR SINE MIR 31 141 -67 432 294 44 40 chr5 47179662 47179889 -155905643 + MIR SINE MIR 25 247 -15 421 364 48 10 chr5 47180944 47181153 -155904379 + MIR SINE MIR 46 262 0 298 327 10 10 chr5 47181675 47181776 -155903756 - MIR3 SINE MIR 0 208 108 313 289 7 60 chr5 47182477 47182626 -155902906 + MER103 DNA DNA 16 156 -10 2044 201 56 2 chr5 47185126 47185569 -155899963 + MLT1C LTR MaLR 1 467 0 224 254 15 0 chr5 47187715 47187782 -155897750 + (TA)n Simple_repeat Simple_repeat 2 69 0 21 0 0 0 chr5 47188284 47188305 -155897227 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr5 47188521 47188550 -155896982 + AT_rich Low_complexity Low_complexity 1 29 0 1222 247 188 27 chr5 47189413 47189924 -155895608 + MLT1E LTR MaLR 1 593 0 775 180 212 14 chr5 47190290 47190507 -155895025 + MLT1E1 LTR MaLR 1 260 -394 1139 229 41 11 chr5 47191018 47191285 -155894247 + MLT1E1 LTR MaLR 380 654 0 227 353 188 23 chr5 47191582 47191715 -155893817 - L2 LINE L2 -6 3266 3112 184 253 0 76 chr5 47191973 47192052 -155893480 - L2 LINE L2 -78 3235 3163 296 160 0 0 chr5 47192074 47192124 -155893408 - L2 LINE L2 -1 3271 3222 875 294 141 30 chr5 47192138 47192761 -155892771 + Charlie7 DNA MER1_type 34 725 -1887 30 45 0 0 chr5 47192797 47192841 -155892691 + AT_rich Low_complexity Low_complexity 1 44 0 2684 232 28 28 chr5 47193689 47194466 -155891066 - L1ME1 LINE L1 -6 6229 5453 19425 172 25 20 chr5 47194486 47197482 -155888050 + L1MA1 LINE L1 23 3003 -4718 2242 93 6 38 chr5 47197482 47197795 -155887737 + AluY SINE Alu 1 303 -8 19425 172 25 20 chr5 47197795 47199985 -155885547 + L1MA1 LINE L1 3003 5181 -2540 1986 144 123 26 chr5 47199985 47200375 -155885157 + MSTA LTR MaLR 1 428 0 8741 158 13 40 chr5 47200377 47201997 -155883535 + MSTA-int LTR MaLR 3 1578 -2 1986 167 132 0 chr5 47201999 47202377 -155883155 + MSTA LTR MaLR 1 428 0 19425 172 25 20 chr5 47202377 47204841 -155880691 + L1MA1 LINE L1 5181 7717 -4 1395 254 139 7 chr5 47204877 47205431 -155880101 - L1ME1 LINE L1 -763 5452 4826 235 271 17 0 chr5 47205432 47205491 -155880041 + MLT1F LTR MaLR 1 60 -482 2784 255 101 13 chr5 47205503 47207002 -155878530 - L1ME1 LINE L1 -2534 3681 2088 321 195 26 0 chr5 47207159 47207236 -155878296 - L1MC4 LINE L1 -3 8039 7961 4494 10 0 0 chr5 47207251 47207762 -155877770 - L1HS LINE L1 0 6155 5645 186 389 36 14 chr5 47208001 47208140 -155877392 + MIR SINE MIR 49 190 -72 210 37 0 0 chr5 47209618 47209645 -155875887 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 313 304 135 75 chr5 47209914 47210417 -155875115 + L2 LINE L2 1968 2500 -814 202 256 0 0 chr5 47212089 47212132 -155873400 - MER5A DNA MER1_type -137 52 10 253 259 0 0 chr5 47212244 47212298 -155873234 + (CA)n Simple_repeat Simple_repeat 2 55 0 1041 322 35 37 chr5 47213160 47213623 -155871909 + L2 LINE L2 2847 3308 -5 247 264 97 28 chr5 47213781 47213853 -155871679 + L2 LINE L2 3237 3313 0 2172 93 0 26 chr5 47213990 47214300 -155871232 - AluSc SINE Alu -4 305 4 58 0 0 0 chr5 47215572 47215630 -155869902 + AT_rich Low_complexity Low_complexity 1 58 0 233 289 24 0 chr5 47215699 47215782 -155869750 - L1MC4 LINE L1 -1341 6701 6617 181 351 0 39 chr5 47217152 47217229 -155868303 - L2 LINE L2 -12 3260 3187 294 307 29 29 chr5 47217636 47217773 -155867759 + L1MEd LINE L1 94 230 -5889 753 47 0 19 chr5 47217988 47218094 -155867438 - AluSp SINE Alu 0 313 210 712 117 10 0 chr5 47218084 47218187 -155867345 - AluSp SINE Alu -126 187 84 * 3105 176 30 2 chr5 47218378 47218913 -155866619 + MER44D DNA MER2_type 1 605 0 229 284 68 27 chr5 47218952 47219026 -155866506 - MIR SINE MIR -114 94 18 264 297 109 0 chr5 47219481 47219582 -155865950 - MIR3 SINE MIR -15 193 82 646 306 113 10 chr5 47219582 47220049 -155865483 - LTR33 LTR ERVL 0 521 1 21 57 0 0 chr5 47221937 47221972 -155863560 + AT_rich Low_complexity Low_complexity 1 35 0 697 243 115 43 chr5 47223429 47223664 -155861868 + MIR SINE MIR 10 261 -1 27 0 0 0 chr5 47223788 47223815 -155861717 + AT_rich Low_complexity Low_complexity 1 27 0 2443 71 0 0 chr5 47225191 47225501 -155860031 + AluY SINE Alu 1 310 -1 233 259 82 67 chr5 47226075 47226210 -155859322 + MIR SINE MIR 8 144 -118 338 307 43 33 chr5 47226237 47226966 -155858566 - L1MEd LINE L1 -1453 4676 3750 374 310 106 29 chr5 47226972 47227217 -155858315 - L1MEd LINE L1 -2549 3580 3317 739 32 0 0 chr5 47227432 47227525 -155858007 + AluS SINE Alu 1 93 -219 1678 136 54 30 chr5 47227574 47227906 -155857626 - L1MA9 LINE L1 0 6312 5973 512 298 104 47 chr5 47227924 47228030 -155857502 - L1MEd LINE L1 -3040 3089 2990 2363 69 14 0 chr5 47228030 47228319 -155857213 + AluSp SINE Alu 1 293 -20 512 298 104 47 chr5 47228319 47229042 -155856490 - L1MEd LINE L1 -3139 2990 2213 6074 139 40 3 chr5 47229085 47230075 -155855457 - L1MC1 LINE L1 -6 6327 5301 21 36 0 0 chr5 47230080 47230108 -155855424 + AT_rich Low_complexity Low_complexity 1 28 0 625 275 115 26 chr5 47230520 47231162 -155854370 - L1MEd LINE L1 -4500 1629 943 225 275 14 0 chr5 47231804 47231873 -155853659 + GA-rich Low_complexity Low_complexity 1 70 0 24 32 0 0 chr5 47232014 47232045 -155853487 + AT_rich Low_complexity Low_complexity 1 31 0 816 261 20 0 chr5 47232174 47232373 -155853159 + MIR SINE MIR 49 251 -11 456 293 102 0 chr5 47235286 47235491 -155850041 + MIR SINE MIR 33 258 -4 198 129 0 0 chr5 47236362 47236393 -155849139 + MIR SINE MIR 84 114 -94 * 337 258 108 0 chr5 47236391 47236484 -155849048 - L2 LINE L2 -2 3311 3209 244 375 0 10 chr5 47236582 47236678 -155848854 - MER91A DNA MER1_type -82 114 20 333 317 60 57 chr5 47237125 47237478 -155848054 - L1ME4a LINE L1 -73 6048 5695 280 224 55 121 chr5 47237592 47237757 -155847775 + MIR SINE MIR 1 154 -54 434 279 49 0 chr5 47238421 47238543 -155846989 + MIR SINE MIR 7 134 -128 472 331 54 54 chr5 47239583 47239998 -155845534 - L2 LINE L2 -257 3056 2629 407 241 128 14 chr5 47240011 47240152 -155845380 + MLT1J2 LTR MaLR 1 157 -293 2529 143 2 12 chr5 47240428 47240828 -155844704 + MER61B LTR ERV1 1 396 -29 946 243 106 84 chr5 47241382 47241880 -155843652 + MLT1J LTR MaLR 1 509 -2 651 266 14 138 chr5 47242214 47242343 -155843189 + MIR SINE MIR 8 83 -179 2442 90 0 0 chr5 47242343 47242654 -155842878 - AluSx SINE Alu 0 312 2 651 266 14 138 chr5 47242654 47242814 -155842718 + MIR SINE MIR 83 261 -1 310 255 19 38 chr5 47244581 47244687 -155840845 + MIR SINE MIR 107 210 -52 314 168 64 24 chr5 47245142 47245257 -155840275 + (TA)n Simple_repeat Simple_repeat 2 124 -7 1799 156 51 12 chr5 47245257 47245591 -155839941 + MER7A DNA MER2_type 2 346 0 314 168 64 24 chr5 47245591 47245600 -155839932 + (TA)n Simple_repeat Simple_repeat 124 131 0 478 222 0 17 chr5 47247830 47247947 -155837585 - L1 LINE L1 -990 5156 5042 2359 57 37 3 chr5 47248025 47248324 -155837208 + AluY SINE Alu 1 309 -2 221 290 138 28 chr5 47248672 47248817 -155836715 - MIR SINE MIR -56 206 46 983 286 37 0 chr5 47251606 47251890 -155833642 - LTR16C LTR ERVL -3 473 194 1979 134 19 8 chr5 47254993 47255359 -155830173 - L1MA8 LINE L1 0 6291 5922 410 289 66 57 chr5 47255603 47255814 -155829718 + MIR SINE MIR 37 249 -13 1628 226 45 54 chr5 47256222 47256371 -155829161 + MLT1C LTR MaLR 6 155 -312 1901 193 11 3 chr5 47256371 47256729 -155828803 - MLT1A1 LTR MaLR 0 365 5 1628 226 45 54 chr5 47256729 47256920 -155828612 + MLT1C LTR MaLR 155 343 -124 2132 137 13 24 chr5 47256920 47257299 -155828233 - THE1C LTR MaLR 0 375 1 1628 226 45 54 chr5 47257299 47257421 -155828111 + MLT1C LTR MaLR 343 465 -2 305 349 38 0 chr5 47258210 47258342 -155827190 - L2 LINE L2 -208 3105 2969 1993 171 0 46 chr5 47258691 47259059 -155826473 + MLT1A1 LTR MaLR 14 364 -1 376 268 12 0 chr5 47260639 47260721 -155824811 - L2 LINE L2 -5 3308 3226 191 313 0 0 chr5 47261979 47262027 -155823505 - L2 LINE L2 -11 3261 3214 417 306 192 24 chr5 47264476 47264773 -155820759 - L2 LINE L2 -978 2336 1990 1073 118 7 0 chr5 47264779 47264932 -155820600 + AluSp/q SINE Alu 158 311 -2 296 286 107 51 chr5 47264941 47265119 -155820413 - L2 LINE L2 -1334 1980 1793 1761 192 28 11 chr5 47265295 47265654 -155819878 - MLT1A1 LTR MaLR 0 365 1 1069 50 0 21 chr5 47266575 47266715 -155818817 + L1PA7 LINE L1 6018 6154 0 580 265 136 15 chr5 47266795 47267119 -155818413 - L1MEd LINE L1 -4886 1233 871 297 0 0 0 chr5 47267471 47267504 -155818028 + (T)n Simple_repeat Simple_repeat 1 33 0 8894 182 20 18 chr5 47268532 47270129 -155815403 - L1MA7 LINE L1 -2 6289 4680 2178 136 13 0 chr5 47270129 47270437 -155815095 - AluSq SINE Alu -1 312 1 8894 182 20 18 chr5 47270437 47271789 -155813743 - L1MA7 LINE L1 -1611 4680 3333 510 343 102 69 chr5 47272236 47272904 -155812628 + HAL1 LINE L1 12 701 -1806 468 254 55 10 chr5 47273030 47273229 -155812303 - MER31B LTR ERV1 0 661 259 2066 190 53 24 chr5 47273229 47273698 -155811834 + L1M1 LINE L1 24 506 -7059 1247 123 9 4 chr5 47273674 47273902 -155811630 + L1M1 LINE L1 2967 3195 -4370 * 514 187 24 0 chr5 47273902 47274025 -155811507 + CT-rich Low_complexity Low_complexity 1 126 0 609 297 51 49 chr5 47274318 47274668 -155810864 - LTR16A1 LTR ERVL 0 457 107 1641 136 145 21 chr5 47275790 47276122 -155809410 - THE1C LTR MaLR 0 375 3 554 223 67 57 chr5 47276998 47277191 -155808341 + MER106A DNA MER1_type 37 231 -5 563 187 0 0 chr5 47277481 47277588 -155807944 + FRAM SINE Alu 70 176 0 590 261 208 13 chr5 47277816 47278233 -155807299 + LTR50 LTR ERVL 3 598 -197 274 161 36 0 chr5 47278291 47278347 -155807185 + LTR50 LTR ERVL 728 785 -10 1396 223 66 18 chr5 47278571 47279010 -155806522 + MLT1C LTR MaLR 8 467 0 459 304 61 17 chr5 47280201 47280382 -155805150 + MIR SINE MIR 49 237 -25 1143 274 25 38 chr5 47281350 47281748 -155803784 - L2 LINE L2 -831 2483 2091 469 378 101 16 chr5 47281777 47282290 -155803242 - L3 LINE CR1 -353 1224 668 1979 125 9 34 chr5 47282320 47282640 -155802892 - AluSx SINE Alu 0 312 1 34 24 0 0 chr5 47282777 47282818 -155802714 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr5 47283070 47283099 -155802433 + AT_rich Low_complexity Low_complexity 1 29 0 3447 29 0 2 chr5 47283556 47283966 -155801566 - L1PA4 LINE L1 -3 6152 5744 428 384 47 41 chr5 47284234 47284677 -155800855 + L1MEd LINE L1 356 801 -5404 496 266 79 26 chr5 47284810 47285152 -155800380 + L1MEd LINE L1 981 1340 -4865 1985 172 9 20 chr5 47285317 47285795 -155799737 + L1P3 LINE L1 6 786 -5675 474 18 0 0 chr5 47286029 47286084 -155799448 + (TG)n Simple_repeat Simple_repeat 2 56 0 2243 215 65 19 chr5 47286084 47286121 -155799411 - MLT2B3 LTR ERVL -3 551 517 474 14 57 0 chr5 47286121 47286191 -155799341 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 2243 215 65 19 chr5 47286191 47286471 -155799061 - MLT2B3 LTR ERVL -37 517 197 1801 165 7 0 chr5 47286471 47286805 -155798727 - AluSx SINE Alu 0 336 1 2243 215 65 19 chr5 47286805 47287011 -155798521 - MLT2B3 LTR ERVL -357 197 2 354 100 62 0 chr5 47287011 47287091 -155798441 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 1086 196 20 125 chr5 47287109 47287517 -155798015 - MLT2D LTR ERVL -48 366 2 453 287 31 36 chr5 47287970 47288165 -155797367 + L1MEd LINE L1 2103 2296 -4100 375 229 99 63 chr5 47288248 47288471 -155797061 + HAL1 LINE L1 2258 2488 -19 719 233 93 5 chr5 47289203 47289396 -155796136 - MER63A DNA MER1_type 0 210 1 490 272 60 32 chr5 47289511 47290045 -155795487 + L1MCc LINE L1 1126 1847 -4891 1455 224 47 0 chr5 47290104 47290426 -155795106 + MER2 DNA MER2_type 9 345 0 212 173 39 0 chr5 47290427 47290479 -155795053 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2520 53 20 0 chr5 47290525 47290827 -155794705 + AluY SINE Alu 1 308 -3 222 118 0 0 chr5 47290830 47290864 -155794668 + (TA)n Simple_repeat Simple_repeat 1 34 0 599 255 121 11 chr5 47291154 47291526 -155794006 + L1MCc LINE L1 2564 2976 -4146 2849 13 0 0 chr5 47292239 47292550 -155792982 + AluYb8 SINE Alu 1 311 -7 29122 53 2 2 chr5 47293066 47297724 -155787808 - L1PA5 LINE L1 0 6154 1495 4014 228 76 29 chr5 47308161 47309599 -155775933 + L1MCc LINE L1 3453 4958 -1983 660 349 63 42 chr5 47310211 47310589 -155774943 + L2 LINE L2 2887 3272 0 240 226 24 60 chr5 47310631 47310715 -155774817 - MIR3 SINE MIR -3 205 125 2669 110 22 3 chr5 47310822 47311206 -155774326 + MLT2A1 LTR ERVL 1 523 -31 468 0 0 0 chr5 47311206 47311258 -155774274 + (TA)n Simple_repeat Simple_repeat 2 53 0 2669 110 22 3 chr5 47311258 47311291 -155774241 + MLT2A1 LTR ERVL 523 554 0 2538 138 8 25 chr5 47311297 47311825 -155773707 + HERVL-A1 LTR ERVL 20 538 -5116 202 383 48 36 chr5 47311987 47312235 -155773297 + L2 LINE L2 1345 1595 -1719 1765 324 72 44 chr5 47312267 47313571 -155771961 + L2 LINE L2 1688 3021 -251 1240 146 67 4 chr5 47313761 47314001 -155771531 - MER2 DNA MER2_type 0 345 91 767 277 83 70 chr5 47314206 47314820 -155770712 - L2 LINE L2 0 3313 2717 282 331 184 31 chr5 47314831 47315212 -155770320 - L2 LINE L2 -2118 1196 758 22 56 0 0 chr5 47315237 47315273 -155770259 + AT_rich Low_complexity Low_complexity 1 36 0 183 364 33 66 chr5 47315610 47315761 -155769771 + MER5A DNA MER1_type 44 189 0 536 340 81 28 chr5 47315774 47316306 -155769226 + MLT1K LTR MaLR 3 562 -26 483 260 82 29 chr5 47318782 47319124 -155766408 + L1MEd LINE L1 981 1340 -4865 1978 169 9 23 chr5 47319289 47319775 -155765757 + L1P3 LINE L1 6 786 -5675 1641 218 37 97 chr5 47319964 47320002 -155765530 - MLT2B3 LTR ERVL 0 551 512 369 0 0 0 chr5 47320002 47320043 -155765489 + (TG)n Simple_repeat Simple_repeat 2 42 0 1641 218 37 97 chr5 47320043 47320080 -155765452 - MLT2B3 LTR ERVL -39 512 474 474 14 57 0 chr5 47320080 47320150 -155765382 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 1641 218 37 97 chr5 47320150 47320430 -155765102 - MLT2B3 LTR ERVL -77 474 179 374 36 36 0 chr5 47320430 47320485 -155765047 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 1736 166 11 0 chr5 47320485 47320763 -155764769 - AluSx SINE Alu -1 335 1 1641 218 37 97 chr5 47320763 47320936 -155764596 - MLT2B3 LTR ERVL -370 181 61 318 105 66 0 chr5 47321019 47321095 -155764437 + (TCTA)n Simple_repeat Simple_repeat 3 83 0 1198 192 52 119 chr5 47321095 47321522 -155764010 - MLT2D LTR ERVL -15 399 2 452 287 31 36 chr5 47321974 47322169 -155763363 + L1MEd LINE L1 2103 2296 -4100 329 221 11 11 chr5 47322252 47322347 -155763185 + HAL1 LINE L1 2258 2352 -155 5949 7 0 6 chr5 47322358 47323032 -155762500 + L1HS LINE L1 5486 6155 0 734 233 93 5 chr5 47323885 47324078 -155761454 - MER63A DNA MER1_type 0 210 1 568 271 60 32 chr5 47324193 47324727 -155760805 + L1MCc LINE L1 1126 1847 -4891 1565 221 47 0 chr5 47324786 47325108 -155760424 + MER2 DNA MER2_type 9 345 0 212 173 39 0 chr5 47325109 47325161 -155760371 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2495 53 20 0 chr5 47325207 47325506 -155760026 + AluY SINE Alu 1 305 -6 201 147 0 0 chr5 47325509 47325543 -155759989 + (TA)n Simple_repeat Simple_repeat 1 34 0 300 236 36 100 chr5 47325586 47325726 -155759806 + L1MCc LINE L1 2105 2235 -4887 422 281 22 43 chr5 47326003 47326142 -155759390 + MER5B DNA MER1_type 43 178 0 750 230 16 95 chr5 47326526 47326778 -155758754 + MIR SINE MIR 31 262 0 435 308 146 39 chr5 47326838 47327202 -155758330 + L1MCc LINE L1 3671 4073 -2868 476 209 22 0 chr5 47328320 47328411 -155757121 + MER63 DNA MER1_type 33 751 -311 257 152 22 0 chr5 47328415 47328461 -155757071 + MER63 DNA MER1_type 978 1024 -36 359 336 34 17 chr5 47328664 47328783 -155756749 - L2 LINE L2 -2 3270 3150 181 310 0 17 chr5 47329089 47329147 -155756385 - MIR SINE MIR -50 212 156 425 262 63 16 chr5 47330318 47330444 -155755088 + L2 LINE L2 3182 3313 0 23 0 0 0 chr5 47332507 47332530 -155753002 + AT_rich Low_complexity Low_complexity 1 23 0 3763 194 31 12 chr5 47332829 47334087 -155751445 + L1MB2 LINE L1 4389 5680 -491 1805 123 31 27 chr5 47334090 47334383 -155751149 - MER7A DNA MER2_type 0 346 55 2297 171 6 49 chr5 47334384 47334852 -155750680 + L1MB2 LINE L1 5688 6135 -36 22 0 0 0 chr5 47334858 47334880 -155750652 + AT_rich Low_complexity Low_complexity 1 22 0 366 222 0 0 chr5 47335141 47335213 -155750319 - L2 LINE L2 0 3272 3201 13892 148 24 10 chr5 47335453 47336064 -155749468 - Tigger1 DNA MER2_type 0 2418 1817 2334 78 0 10 chr5 47336064 47336358 -155749174 + AluY SINE Alu 1 291 -20 13892 148 24 10 chr5 47336358 47338129 -155747403 - Tigger1 DNA MER2_type -601 1817 1 262 325 117 0 chr5 47338497 47338617 -155746915 + MIR3 SINE MIR 63 196 -12 744 223 69 6 chr5 47338692 47338867 -155746665 + MER5A DNA MER1_type 1 186 -3 248 232 18 0 chr5 47339160 47339216 -155746316 + (TGGA)n Simple_repeat Simple_repeat 2 58 0 186 321 49 12 chr5 47340010 47340091 -155745441 + MIR SINE MIR 108 191 -71 336 310 41 41 chr5 47340270 47340441 -155745091 - MIR SINE MIR -70 192 22 2359 98 0 0 chr5 47340512 47340818 -155744714 - AluSc SINE Alu 0 309 4 4453 237 56 30 chr5 47340845 47343102 -155742430 + L1ME1 LINE L1 3839 6156 -10 7990 83 4 18 chr5 47343375 47344462 -155741070 + MER11C LTR ERVK 1 1071 0 354 294 153 6 chr5 47344539 47344702 -155740830 + MIR SINE MIR 11 197 -65 180 97 0 0 chr5 47345847 47345878 -155739654 + (T)n Simple_repeat Simple_repeat 1 31 0 1957 143 0 0 chr5 47346618 47346905 -155738627 - AluSx SINE Alu -25 287 1 235 309 15 0 chr5 47347661 47347729 -155737803 + CT-rich Low_complexity Low_complexity 3 71 0 1520 226 48 99 chr5 47348022 47348565 -155736967 - MLT2B1 LTR ERVL 0 520 6 520 14 29 0 chr5 47350083 47350152 -155735380 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 8543 191 12 11 chr5 47351540 47354073 -155731459 + L1PA15 LINE L1 3627 6159 -6 724 152 61 18 chr5 47355855 47356020 -155729512 + MER96B DNA MER1_type? 8 179 -238 2512 127 163 76 chr5 47359173 47359738 -155725794 + LTR18B LTR ERVL 1 614 0 398 207 152 70 chr5 47359909 47360115 -155725417 + MIR SINE MIR 2 212 -50 398 365 30 77 chr5 47363527 47363891 -155721641 - L2 LINE L2 0 3272 2926 1537 205 5 80 chr5 47364138 47364538 -155720994 - MLT1A2 LTR MaLR -4 370 1 378 0 0 0 chr5 47364839 47364881 -155720651 + (TG)n Simple_repeat Simple_repeat 2 43 0 678 297 73 23 chr5 47365095 47365314 -155720218 + MIR SINE MIR 2 231 -31 214 242 10 30 chr5 47365335 47365434 -155720098 + A-rich Low_complexity Low_complexity 3 99 0 254 260 41 0 chr5 47365443 47365566 -155719966 + L1ME4a LINE L1 5994 6121 0 227 260 96 0 chr5 47365661 47365734 -155719798 + MIR SINE MIR 132 211 -51 652 349 74 10 chr5 47365774 47366178 -155719354 + LTR33 LTR ERVL 77 506 -15 216 150 50 0 chr5 47366384 47366424 -155719108 - MIR SINE MIR -9 253 212 742 233 0 0 chr5 47366425 47366575 -155718957 - MER21-int LTR ERV1 -3695 496 347 2928 226 64 29 chr5 47366576 47367324 -155718208 - MER21B LTR ERV1 -47 816 43 258 232 0 134 chr5 47367328 47367410 -155718122 - MER21B LTR ERV1 -775 88 18 181 294 337 0 chr5 47367540 47367632 -155717900 - MIR SINE MIR -123 139 17 638 273 167 0 chr5 47368226 47368424 -155717108 + MIR SINE MIR 2 232 -30 406 203 102 34 chr5 47368600 47368718 -155716814 - L2 LINE L2 -4 3309 3184 279 0 0 0 chr5 47368743 47368775 -155716757 + MLT2A1 LTR ERVL 29 60 -384 688 223 82 5 chr5 47368777 47368814 -155716718 - Ricksha DNA DNA -2863 383 333 22584 78 3 4 chr5 47368814 47373054 -155712478 - HERVL-A1 LTR ERVL 0 5654 1418 11187 70 7 0 chr5 47373190 47374611 -155710921 - HERVL-A1 LTR ERVL -4204 1450 20 2999 102 33 0 chr5 47374617 47375047 -155710485 - MLT2A1 LTR ERVL 0 444 1 241 226 24 60 chr5 47375154 47375238 -155710294 + MIR3 SINE MIR 125 205 -3 676 353 65 37 chr5 47375280 47375634 -155709898 - L2 LINE L2 0 3272 2909 539 336 8 51 chr5 47375671 47375906 -155709626 - MIR SINE MIR -30 232 8 324 335 119 53 chr5 47375900 47376165 -155709367 - L2 LINE L2 -394 2919 2673 * 337 307 193 0 chr5 47376165 47376228 -155709304 + MER5A DNA MER1_type 11 61 -128 1926 87 0 23 chr5 47376228 47376493 -155709039 + AluY SINE Alu 1 259 -52 337 307 193 0 chr5 47376493 47376579 -155708953 + MER5A DNA MER1_type 61 189 0 341 253 213 27 chr5 47376587 47376737 -155708795 + MER5B DNA MER1_type 1 178 0 324 335 119 53 chr5 47376737 47377236 -155708296 - L2 LINE L2 -646 2667 1934 1485 177 22 130 chr5 47377244 47377410 -155708122 - MLT1A1 LTR MaLR -2 363 265 2292 110 51 28 chr5 47377410 47377766 -155707766 + THE1B LTR MaLR 1 364 0 1485 177 22 130 chr5 47377766 47378006 -155707526 - MLT1A1 LTR MaLR -100 265 1 269 294 92 34 chr5 47378382 47378501 -155707031 - L2 LINE L2 -6 3266 3141 1533 167 67 4 chr5 47379228 47379497 -155706035 + AluJo SINE Alu 3 288 -24 1010 164 22 76 chr5 47380522 47380747 -155704785 - MER20 DNA MER1_type -1 218 6 282 56 0 0 chr5 47381394 47381430 -155704102 + (CA)n Simple_repeat Simple_repeat 2 37 0 21 57 0 0 chr5 47384025 47384060 -155701472 + AT_rich Low_complexity Low_complexity 1 35 0 2459 255 55 5 chr5 47384740 47385497 -155700035 + Zaphod DNA AcHobo 66 860 -3171 313 171 14 0 chr5 47385508 47385578 -155699954 + Zaphod DNA AcHobo 3832 3902 -129 227 345 146 18 chr5 47387242 47387352 -155698180 + L2 LINE L2 3142 3265 -7 570 181 76 28 chr5 47387858 47388002 -155697530 + L1MC1 LINE L1 6183 6333 0 1046 154 26 5 chr5 47388057 47388252 -155697280 - L1PA16 LINE L1 -9 6157 5959 1429 212 10 49 chr5 47388252 47388638 -155696894 - L1P LINE L1 -829 5317 4947 3822 223 7 20 chr5 47388639 47389586 -155695946 + L1P LINE L1 4011 4945 -1201 278 315 47 20 chr5 47389630 47389779 -155695753 + L1MEd LINE L1 857 1009 -5363 518 293 151 23 chr5 47389902 47390493 -155695039 + L1MEd LINE L1 1071 1887 -4676 400 270 101 45 chr5 47390554 47390732 -155694800 - L2 LINE L2 -1362 1952 1765 1444 303 44 39 chr5 47390732 47391320 -155694212 - L2 LINE L2 -1691 1623 1033 706 287 96 51 chr5 47391327 47391755 -155693777 - LTR16B LTR ERVL 0 464 18 1279 155 48 0 chr5 47391802 47392037 -155693495 + AluSg/x SINE Alu 68 312 0 180 111 0 0 chr5 47392101 47392128 -155693404 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 392 322 0 26 chr5 47392601 47392716 -155692816 + MIR SINE MIR 26 137 -125 2095 230 29 23 chr5 47392786 47393491 -155692041 - LTR27 LTR ERV1 0 636 3 197 324 111 19 chr5 47394544 47394652 -155690880 - L2 LINE L2 -2882 432 315 2198 110 7 23 chr5 47395093 47395403 -155690129 - AluSx SINE Alu -7 305 1 375 272 128 31 chr5 47396176 47396371 -155689161 + MIR SINE MIR 22 235 -27 1996 183 31 5 chr5 47396407 47396789 -155688743 + L1MC1 LINE L1 5942 6333 0 22 0 0 0 chr5 47396793 47396815 -155688717 + AT_rich Low_complexity Low_complexity 1 22 0 279 224 52 0 chr5 47398056 47398114 -155687418 + L2 LINE L2 3175 3235 -37 2536 121 159 116 chr5 47398249 47398911 -155686621 - L1MA6 LINE L1 -23 6277 5588 * 5226 128 25 15 chr5 47398896 47399254 -155686278 - L1PB4 LINE L1 -3 6856 6503 345 100 0 0 chr5 47399254 47399304 -155686228 + (TG)n Simple_repeat Simple_repeat 2 51 0 5226 128 25 15 chr5 47399304 47399836 -155685696 - L1PB4 LINE L1 -356 6503 5957 1711 115 50 149 chr5 47399851 47400267 -155685265 + THE1C LTR MaLR 1 375 0 5662 238 31 76 chr5 47400267 47401450 -155684082 - L1PB4 LINE L1 -903 5946 4711 2119 162 78 16 chr5 47401450 47401833 -155683699 + MSTB LTR MaLR 1 407 -19 2414 173 14 5 chr5 47401840 47402262 -155683270 - MSTB LTR MaLR 0 426 1 5662 238 31 76 chr5 47402262 47403419 -155682113 - L1PB4 LINE L1 -2144 4705 3497 339 186 0 0 chr5 47403419 47403489 -155682043 + MER41A LTR ERV1 399 468 -86 5662 238 31 76 chr5 47403489 47406920 -155678612 - L1PB4 LINE L1 -3352 3497 433 2343 90 0 31 chr5 47406920 47407241 -155678291 + AluY SINE Alu 1 311 0 5662 238 31 76 chr5 47407241 47407656 -155677876 - L1PB4 LINE L1 -6416 433 1 929 173 0 6 chr5 47407659 47407827 -155677705 - L1M2 LINE L1 -684 5616 5450 2759 173 4 10 chr5 47407835 47408435 -155677097 + L1M1 LINE L1 4844 5442 -744 231 269 154 8 chr5 47408484 47408614 -155676918 + Charlie8 DNA MER1_type 24 172 -2245 30 45 0 0 chr5 47409066 47409110 -155676422 + AT_rich Low_complexity Low_complexity 1 44 0 34 55 0 0 chr5 47410276 47410331 -155675201 + AT_rich Low_complexity Low_complexity 1 55 0 1072 283 87 27 chr5 47410715 47411153 -155674379 + MLT2F LTR ERVL 200 663 0 431 280 106 34 chr5 47411155 47411419 -155674113 - L1MEc LINE L1 -4003 2393 2111 482 286 108 9 chr5 47411606 47411837 -155673695 - L1MEc LINE L1 -4260 2136 1883 308 275 100 42 chr5 47411859 47411979 -155673553 - L1MEc LINE L1 -4531 1684 1558 651 259 17 35 chr5 47411992 47412013 -155673519 - L1P LINE L1 -1507 4639 4619 5193 160 23 22 chr5 47412013 47413542 -155671990 - L1PA15 LINE L1 -3 7600 6069 * 6645 52 17 0 chr5 47413536 47414824 -155670708 - L1PA7 LINE L1 0 6154 4875 651 259 17 35 chr5 47413542 47415060 -155670472 - L1P LINE L1 -1527 4619 4410 1044 219 2 95 chr5 47415122 47415564 -155669968 - L1PA15 LINE L1 -1680 5904 5504 5292 251 44 24 chr5 47415568 47418426 -155667106 - L1PA15 LINE L1 -2918 4666 1667 8694 205 81 30 chr5 47418438 47418520 -155667012 - L1MCa LINE L1 -1793 4633 4557 414 57 0 0 chr5 47418520 47418573 -155666959 + (TG)n Simple_repeat Simple_repeat 1 53 0 8694 205 81 30 chr5 47418573 47421619 -155663913 - L1MCa LINE L1 -1869 4557 1207 2150 83 17 3 chr5 47421619 47421779 -155663753 - AluY SINE Alu -19 292 125 423 0 0 0 chr5 47421779 47421826 -155663706 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2150 83 17 3 chr5 47421826 47421953 -155663579 - AluY SINE Alu -186 125 1 8694 205 81 30 chr5 47421953 47422900 -155662632 - L1MCa LINE L1 -5219 1207 310 769 315 81 30 chr5 47422923 47423397 -155662135 - L1MEc LINE L1 -4873 1523 1010 2081 121 3 25 chr5 47423397 47423711 -155661821 - AluSp SINE Alu -6 307 1 769 315 81 30 chr5 47423711 47423845 -155661687 - L1MEc LINE L1 -5386 1010 884 7818 142 24 6 chr5 47423950 47424006 -155661526 - Tigger2 DNA MER2_type -1 2717 2663 4227 58 0 4 chr5 47424006 47424539 -155660993 + L1PA7 LINE L1 5617 6147 -7 7818 142 24 6 chr5 47424539 47425810 -155659722 - Tigger2 DNA MER2_type -55 2663 1366 1360 190 20 70 chr5 47425876 47426276 -155659256 - LTR56 LTR ERV1 -57 388 9 * 7720 137 23 30 chr5 47426270 47427159 -155658373 - Tigger2 DNA MER2_type -1336 1382 505 2721 29 0 3 chr5 47427159 47427467 -155658065 + AluY SINE Alu 1 307 -4 7720 137 23 30 chr5 47427467 47427969 -155657563 - Tigger2 DNA MER2_type -2213 505 1 252 0 0 0 chr5 47428263 47428291 -155657241 + (TG)n Simple_repeat Simple_repeat 1 28 0 183 129 0 0 chr5 47428291 47428322 -155657210 + (TGG)n Simple_repeat Simple_repeat 3 33 0 412 245 180 0 chr5 47429005 47429159 -155656373 - MIR SINE MIR -28 234 53 4144 206 24 5 chr5 47429310 47430244 -155655288 - L1MD2 LINE L1 -13 6346 5396 247 206 131 19 chr5 47430522 47430629 -155654903 - L1MC5 LINE L1 -37 7924 7806 198 0 0 0 chr5 47431628 47431650 -155653882 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 424 182 71 0 chr5 47431874 47431973 -155653559 + L2 LINE L2 3177 3282 -31 1832 231 78 83 chr5 47431977 47432748 -155652784 + LTR41 LTR ERVL 1 767 -6 223 245 0 0 chr5 47432967 47433016 -155652516 - L2 LINE L2 0 3313 3265 182 118 29 0 chr5 47433162 47433196 -155652336 + CT-rich Low_complexity Low_complexity 1 35 0 186 305 207 8 chr5 47433289 47433545 -155651987 - L3b LINE CR1 -171 1412 1106 2023 144 0 13 chr5 47433701 47434006 -155651526 - AluJb SINE Alu -7 305 5 2027 103 15 0 chr5 47434038 47434309 -155651223 - AluSp SINE Alu -18 295 21 367 209 0 44 chr5 47434645 47434736 -155650796 + HsTC2 DNA Tc2 7 93 -1805 195 42 0 0 chr5 47435212 47435236 -155650296 + (CCCCAA)n Simple_repeat Simple_repeat 6 29 0 3822 178 45 29 chr5 47435369 47436139 -155649393 + LTR39 LTR ERV1 1 783 0 181 245 75 0 chr5 47436664 47436717 -155648815 + MIR SINE MIR 139 195 -67 1619 203 14 0 chr5 47438027 47438308 -155647224 + AluJb SINE Alu 7 291 -21 3684 42 0 31 chr5 47439051 47439529 -155646003 + L1PA5 LINE L1 5692 6154 0 238 224 0 0 chr5 47442283 47442332 -155643200 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 2566 66 0 0 chr5 47442827 47443129 -155642403 - AluSp SINE Alu -11 302 1 260 67 0 183 chr5 47444023 47444083 -155641449 + MADE1 DNA Mariner 32 80 0 356 279 96 15 chr5 47444304 47444440 -155641092 + L1MB2 LINE L1 5133 5279 -867 3709 158 42 6 chr5 47444448 47445155 -155640377 + L1MB2 LINE L1 5407 6139 -32 222 203 14 87 chr5 47445685 47445754 -155639778 - L2 LINE L2 -64 3249 3186 2427 65 0 0 chr5 47447356 47447647 -155637885 + AluY SINE Alu 1 291 -20 2355 125 17 3 chr5 47447855 47448214 -155637318 + THE1B LTR MaLR 1 364 0 2406 78 0 23 chr5 47449166 47449475 -155636057 + AluY SINE Alu 1 302 -9 484 259 88 0 chr5 47450169 47450316 -155635216 - L3 LINE CR1 -2 1575 1416 2094 108 0 24 chr5 47450536 47450832 -155634700 - AluSx SINE Alu -15 297 9 12425 33 11 0 chr5 47452067 47454331 -155631201 - L1PA5 LINE L1 -2 6152 3870 11693 36 16 1 chr5 47454331 47455877 -155629655 + L1PA5 LINE L1 2313 3881 -2265 279 283 0 0 chr5 47456058 47456118 -155629414 - L2 LINE L2 -2 3311 3252 426 356 118 35 chr5 47456163 47456964 -155628568 + L2 LINE L2 2154 3017 -255 230 299 299 30 chr5 47456995 47457259 -155628273 - L2 LINE L2 -13 3259 2925 216 0 0 0 chr5 47459720 47459744 -155625788 + (T)n Simple_repeat Simple_repeat 1 24 0 318 262 65 0 chr5 47459771 47459878 -155625654 - HAL1 LINE L1 -145 2362 2249 323 279 23 0 chr5 47461038 47461124 -155624408 + MIR SINE MIR 1 88 -174 281 290 149 0 chr5 47461731 47461838 -155623694 + MIR3 SINE MIR 9 131 -77 1512 182 23 19 chr5 47462055 47462319 -155623213 + AluJo SINE Alu 7 271 -41 182 33 67 0 chr5 47462327 47462357 -155623175 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 507 69 0 0 chr5 47462854 47462926 -155622606 + (CA)n Simple_repeat Simple_repeat 2 73 0 1014 129 0 0 chr5 47463991 47464146 -155621386 + L1MA1 LINE L1 6148 6302 0 21 0 0 0 chr5 47464146 47464167 -155621365 + AT_rich Low_complexity Low_complexity 1 21 0 254 208 0 13 chr5 47465324 47465401 -155620131 + L1M4c LINE L1 1743 1818 -4566 203 339 152 12 chr5 47465978 47466143 -155619389 + MIR SINE MIR 33 220 -42 822 264 67 77 chr5 47466184 47466747 -155618785 - L2 LINE L2 -4 3309 2677 313 309 110 71 chr5 47466883 47467165 -155618367 + L2 LINE L2 2979 3271 -1 219 375 101 31 chr5 47467513 47468030 -155617502 - L2 LINE L2 -573 2741 2189 437 286 25 36 chr5 47468392 47468588 -155616944 - MLT1J LTR MaLR -298 213 20 219 209 15 15 chr5 47469394 47469461 -155616071 + A-rich Low_complexity Low_complexity 5 71 0 432 279 184 15 chr5 47470836 47471037 -155614495 + MIR SINE MIR 28 262 0 377 204 143 20 chr5 47471067 47471165 -155614367 + L2 LINE L2 3194 3303 -10 22 0 0 0 chr5 47472606 47472628 -155612904 + AT_rich Low_complexity Low_complexity 1 22 0 295 268 45 36 chr5 47473828 47473940 -155611592 + MIR SINE MIR 94 206 -56 814 284 96 21 chr5 47474746 47475108 -155610424 + MLT1J1 LTR MaLR 45 433 -13 205 258 32 137 chr5 47475231 47475355 -155610177 + L2 LINE L2 3161 3271 -1 194 347 27 0 chr5 47475909 47475984 -155609548 - L2 LINE L2 -8 3264 3188 466 85 12 12 chr5 47477270 47477352 -155608180 + (TA)n Simple_repeat Simple_repeat 1 82 0 272 328 136 20 chr5 47477383 47477685 -155607847 + L2 LINE L2 1954 2290 -1024 726 272 42 22 chr5 47477702 47478051 -155607481 + MLT1J2 LTR MaLR 1 393 -57 540 332 132 22 chr5 47478058 47478567 -155606965 + L2 LINE L2 2331 2895 -419 1322 205 38 27 chr5 47479041 47479334 -155606198 + AluJo SINE Alu 1 296 -16 1909 107 59 4 chr5 47479366 47479659 -155605873 - AluSx SINE Alu 0 308 1 322 171 0 53 chr5 47481458 47481534 -155603998 + MER116 DNA Mariner 8 79 -1 1558 162 0 84 chr5 47482892 47483200 -155602332 + AluJb SINE Alu 1 282 -30 977 184 82 10 chr5 47483895 47484102 -155601430 + L1MC4a LINE L1 6603 6824 -984 351 315 179 9 chr5 47484626 47484855 -155600677 + MIR SINE MIR 6 256 -6 401 275 8 15 chr5 47485468 47485599 -155599933 + L1ME LINE L1 1785 1914 -4482 181 240 60 20 chr5 47486013 47486063 -155599469 + L3 LINE CR1 1403 1454 -123 343 284 95 0 chr5 47487166 47487314 -155598218 + L1ME LINE L1 5607 5768 -422 929 293 80 61 chr5 47487349 47487923 -155597609 + L1MEc LINE L1 116 700 -5696 561 289 32 0 chr5 47487941 47488131 -155597401 + L1MEc LINE L1 1695 1890 -4506 654 259 18 6 chr5 47488786 47488956 -155596576 - MER5B DNA MER1_type -3 175 4 409 356 43 0 chr5 47489258 47489421 -155596111 + MIR3 SINE MIR 16 185 -23 656 266 101 21 chr5 47489423 47489660 -155595872 + MIR SINE MIR 7 262 0 2429 61 3 10 chr5 47489676 47489989 -155595543 + AluY SINE Alu 1 311 0 257 306 217 25 chr5 47492140 47492297 -155593235 + MIR SINE MIR 3 189 -73 458 212 0 106 chr5 47492303 47492435 -155593097 - L2 LINE L2 -4 3309 3192 1025 205 120 0 chr5 47492436 47492636 -155592896 + MER58A DNA MER1_type 1 224 0 2110 226 158 12 chr5 47492684 47493901 -155591631 - L1MEc LINE L1 -3169 3046 1695 534 300 0 25 chr5 47493919 47494119 -155591413 - L1MEc LINE L1 -5696 700 506 216 0 0 0 chr5 47494120 47494144 -155591388 + (T)n Simple_repeat Simple_repeat 1 24 0 506 181 124 112 chr5 47495250 47495509 -155590023 - L1MC5 LINE L1 -63 7898 7637 246 390 0 21 chr5 47495538 47495633 -155589899 - MIR SINE MIR -78 130 38 6092 88 20 15 chr5 47495749 47495960 -155589572 + L1PA11 LINE L1 5178 5387 -787 2021 144 3 0 chr5 47495960 47496252 -155589280 + AluSx SINE Alu 3 295 -17 6092 88 20 15 chr5 47496252 47497033 -155588499 + L1PA11 LINE L1 5387 6174 0 257 175 105 0 chr5 47497041 47497098 -155588434 + MIR SINE MIR 81 143 -65 210 336 56 65 chr5 47497115 47497222 -155588310 - L2 LINE L2 -5 3267 3162 2327 88 0 0 chr5 47497269 47497565 -155587967 + AluY SINE Alu 1 296 -15 389 306 87 20 chr5 47497676 47497872 -155587660 - L1 LINE L1 -1681 4465 4257 321 323 77 20 chr5 47498244 47498439 -155587093 - L1 LINE L1 -2689 3457 3252 236 324 35 12 chr5 47498518 47498688 -155586844 - L1 LINE L1 -3127 3019 2846 332 342 34 17 chr5 47498856 47498973 -155586559 + MIR3 SINE MIR 3 121 -87 922 201 72 0 chr5 47498977 47499171 -155586361 + MER3 DNA MER1_type 1 208 -1 2296 97 0 0 chr5 47501048 47501336 -155584196 - AluSg SINE Alu -22 288 1 1779 198 29 21 chr5 47502036 47502506 -155583026 - L1MD3 LINE L1 0 7995 7387 274 214 29 57 chr5 47502506 47502576 -155582956 - MLT1F1 LTR MaLR -457 110 43 2927 222 50 59 chr5 47502590 47503387 -155582145 + MER21B LTR ERV1 17 806 -57 424 171 117 0 chr5 47503418 47503529 -155582003 - L1MC3 LINE L1 -699 7086 6963 233 56 0 28 chr5 47503533 47503569 -155581963 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2017 114 0 0 chr5 47503571 47503844 -155581688 - AluY SINE Alu -24 287 15 749 155 39 0 chr5 47554357 47554486 -155531046 + AluSq/x SINE Alu 1 134 -179 21 36 0 0 chr5 47557680 47557708 -155527824 + AT_rich Low_complexity Low_complexity 1 28 0 2070 162 73 5 chr5 47558676 47559071 -155526461 + MSTB LTR MaLR 5 426 0 234 196 20 0 chr5 47559808 47559859 -155525673 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 509 252 181 24 chr5 47561224 47561522 -155524010 + L1ME4a LINE L1 5712 6056 -65 190 329 79 14 chr5 47561730 47561870 -155523662 + L2 LINE L2 2505 2653 -661 817 249 39 0 chr5 47563471 47563700 -155521832 + L1MA4 LINE L1 6059 6296 -4 216 399 86 17 chr5 47565213 47565446 -155520086 + L3 LINE CR1 255 503 -1074 215 256 103 0 chr5 47565776 47565854 -155519678 + L3 LINE CR1 596 681 -896 340 305 86 33 chr5 47566393 47566544 -155518988 + L3 LINE CR1 663 821 -756 2350 256 131 0 chr5 47566649 47567083 -155518449 + L1PA3 LINE L1 5664 6154 -1 24 0 0 0 chr5 47567427 47567451 -155518081 + AT_rich Low_complexity Low_complexity 1 24 0 782 191 0 0 chr5 47567543 47567674 -155517858 - FLAM_A SINE Alu -2 131 1 2140 166 98 5 chr5 47568749 47569176 -155516356 + LTR24 LTR ERV1 1 467 0 339 364 86 25 chr5 47569453 47569615 -155515917 + MIR3 SINE MIR 19 190 -18 2003 104 7 0 chr5 47570083 47570353 -155515179 - AluSx SINE Alu -30 282 11 426 290 150 17 chr5 47570835 47571197 -155514335 + L1ME LINE L1 5347 5758 -363 1812 193 81 3 chr5 47572158 47572769 -155512763 - L1MC/D LINE L1 -698 5926 5261 323 209 110 0 chr5 47573192 47573283 -155512249 - L1MC/D LINE L1 -4262 2164 2064 * 2399 196 22 10 chr5 47573275 47573770 -155511762 - L1MC/D LINE L1 -5905 521 21 261 333 105 7 chr5 47574167 47574320 -155511212 + MIR SINE MIR 15 182 -80 526 205 43 50 chr5 47575763 47575924 -155509608 + MSTB1 LTR MaLR 217 376 -56 685 313 112 24 chr5 47576750 47577242 -155508290 + L2 LINE L2 2171 2705 -609 185 282 51 77 chr5 47577443 47577560 -155507972 + MIR SINE MIR 106 219 -43 2010 84 7 54 chr5 47578162 47578484 -155507048 - AluSq SINE Alu 0 308 1 447 195 214 31 chr5 47578880 47579039 -155506493 - MER58C DNA MER1_type -1 214 27 940 271 58 45 chr5 47581285 47581661 -155503871 + L2 LINE L2 2895 3275 -38 226 296 0 12 chr5 47581830 47581911 -155503621 + L1MC5 LINE L1 7822 7901 -60 398 162 90 27 chr5 47582082 47582193 -155503339 + L1M1 LINE L1 16 133 -7432 8522 125 79 18 chr5 47582202 47582441 -155503091 + L1M1 LINE L1 1522 1745 -5820 279 0 0 0 chr5 47582441 47582472 -155503060 + (GA)n Simple_repeat Simple_repeat 2 32 0 8522 125 79 18 chr5 47582472 47583883 -155501649 + L1M1 LINE L1 1745 3273 -4292 1310 121 0 11 chr5 47583883 47584065 -155501467 + AluSx SINE Alu 1 180 -132 462 82 0 0 chr5 47584065 47584126 -155501406 + AluSp/q SINE Alu 235 295 -18 2314 151 38 32 chr5 47584129 47584948 -155500584 + L1M1 LINE L1 3265 4084 -3481 1643 173 82 20 chr5 47584958 47585410 -155500122 + L1M1 LINE L1 4409 4888 -2677 262 48 0 0 chr5 47585411 47585453 -155500079 + L1MA3 LINE L1 6264 6305 0 2099 132 6 40 chr5 47586602 47586950 -155498582 - MER1B DNA MER1_type -1 336 1 27 0 0 0 chr5 47587103 47587130 -155498402 + AT_rich Low_complexity Low_complexity 1 27 0 707 281 57 18 chr5 47587856 47588084 -155497448 + MIR SINE MIR 10 246 -16 640 198 128 11 chr5 47588594 47588723 -155496809 + MER3 DNA MER1_type 1 160 -49 1575 151 68 11 chr5 47588723 47589001 -155496531 - AluJb SINE Alu -13 299 6 640 198 128 11 chr5 47589001 47589058 -155496474 + MER3 DNA MER1_type 160 209 0 311 296 8 32 chr5 47589058 47589175 -155496357 + MER117 DNA MER1_type 43 158 -39 216 367 57 32 chr5 47592676 47592834 -155492698 - L2 LINE L2 -221 3051 2890 403 286 86 0 chr5 47593030 47593240 -155492292 - L1M4 LINE L1 -1537 4609 4382 1541 274 186 32 chr5 47593830 47595085 -155490447 + L2 LINE L2 1843 3295 -18 26 64 0 0 chr5 47595451 47595498 -155490034 + AT_rich Low_complexity Low_complexity 1 47 0 246 95 0 0 chr5 47595658 47595700 -155489832 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7056 15 9 0 chr5 47595700 47596557 -155488975 - L1PA3 LINE L1 -10 6145 5281 * 15741 32 1 11 chr5 47596554 47598641 -155486891 + L1PA3 LINE L1 3206 5273 -873 668 175 56 16 chr5 47600594 47600720 -155484812 + FLAM_C SINE Alu 1 131 -2 1159 168 177 37 chr5 47601438 47601766 -155483766 + MLT1A2 LTR MaLR 1 374 0 1806 122 54 44 chr5 47602371 47602666 -155482866 + AluSx SINE Alu 6 303 -9 196 321 0 0 chr5 47603242 47603295 -155482237 - MIR SINE MIR -58 150 98 22 70 0 0 chr5 47603760 47603803 -155481729 + AT_rich Low_complexity Low_complexity 1 43 0 2040 244 55 25 chr5 47604244 47604956 -155480576 + L1ME3A LINE L1 5428 6160 -10 258 304 76 0 chr5 47605144 47605223 -155480309 - L2 LINE L2 -1 3271 3187 1045 275 148 5 chr5 47606473 47606913 -155478619 + L2 LINE L2 2365 2867 -447 592 267 175 51 chr5 47606913 47607325 -155478207 + LTR33 LTR ERVL 13 475 -46 2058 193 10 8 chr5 47608433 47608826 -155476706 + MER44D DNA MER2_type 8 401 -304 1137 174 28 0 chr5 47608824 47609042 -155476490 + MER44D DNA MER2_type 457 552 -53 * 335 23 23 0 chr5 47609386 47609430 -155476102 + (TA)n Simple_repeat Simple_repeat 2 46 0 2056 104 4 0 chr5 47611460 47611730 -155473802 + AluSq SINE Alu 11 281 -32 213 154 0 0 chr5 47611921 47611960 -155473572 + (CA)n Simple_repeat Simple_repeat 2 40 0 1130 172 162 0 chr5 47612360 47612650 -155472882 + MER44D DNA MER2_type 2 608 -1 913 148 136 4 chr5 47612651 47612894 -155472638 - L1MA8 LINE L1 -68 6223 5949 213 397 43 0 chr5 47613139 47613280 -155472252 - L2 LINE L2 -1 3271 3125 301 228 0 13 chr5 47613903 47613982 -155471550 + HAL1 LINE L1 1065 1142 -1365 1048 96 45 0 chr5 47614450 47614627 -155470905 - L1MA1 LINE L1 -102 6200 6016 268 247 83 107 chr5 47615011 47615198 -155470334 + MIR SINE MIR 23 200 -62 22 56 0 0 chr5 47615318 47615354 -155470178 + AT_rich Low_complexity Low_complexity 1 36 0 480 91 0 0 chr5 47616471 47616548 -155468984 - L1PB1 LINE L1 0 6151 6075 198 234 69 122 chr5 47616664 47616852 -155468680 - L2 LINE L2 -38 3275 3098 190 315 136 47 chr5 47616902 47617159 -155468373 - L2 LINE L2 -803 2511 2232 857 173 49 0 chr5 47617357 47617519 -155468013 + MER5A DNA MER1_type 20 189 0 224 328 70 39 chr5 47617630 47617758 -155467774 - L2 LINE L2 -2 3270 3139 2544 4 0 0 chr5 47617848 47618120 -155467412 + AluYa5 SINE Alu 23 294 -17 422 266 149 0 chr5 47620536 47620690 -155464842 + MIR SINE MIR 86 262 0 186 128 0 0 chr5 47621901 47621940 -155463592 + (T)n Simple_repeat Simple_repeat 1 39 0 1955 140 29 18 chr5 47621993 47622104 -155463428 + MER7A DNA MER2_type 2 110 -2928 1551 134 48 70 chr5 47622104 47622417 -155463115 + AluJb SINE Alu 1 306 -6 1955 140 29 18 chr5 47622417 47622648 -155462884 + MER7A DNA MER2_type 110 346 0 243 218 99 40 chr5 47623317 47623418 -155462114 + L2 LINE L2 2682 2788 -526 311 326 12 0 chr5 47623551 47623637 -155461895 + MIR SINE MIR 6 92 -170 713 160 8 0 chr5 47623756 47623875 -155461657 - MLT1A1 LTR MaLR 0 374 255 1038 198 114 51 chr5 47623880 47624307 -155461225 + MER57A LTR ERV1 1 403 0 1032 195 82 35 chr5 47624307 47624538 -155460994 - MLT1A1 LTR MaLR -123 242 1 2057 121 23 0 chr5 47625118 47625423 -155460109 + AluSx SINE Alu 1 312 0 323 306 156 0 chr5 47626165 47626338 -155459194 + L2 LINE L2 2870 3069 -203 184 257 68 54 chr5 47626413 47626487 -155459045 + L2 LINE L2 3228 3302 -11 2600 150 44 11 chr5 47627396 47627870 -155457662 + L1MB1 LINE L1 5676 6165 -3 843 171 0 42 chr5 47628400 47628693 -155456839 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr5 47628975 47628997 -155456535 + AT_rich Low_complexity Low_complexity 1 22 0 330 276 17 9 chr5 47629307 47629423 -155456109 + L1MC/D LINE L1 5607 5723 -2085 349 338 43 81 chr5 47629544 47629890 -155455642 - L2 LINE L2 -45 3227 2895 1824 120 67 20 chr5 47630057 47630378 -155455154 - MER4B LTR ERV1 -284 495 1 2270 129 22 14 chr5 47630378 47630749 -155454783 - LTR39-int LTR ERV1 0 6758 6385 6585 123 14 37 chr5 47630851 47631960 -155453572 - LTR39-int LTR ERV1 -421 6337 5254 378 82 0 0 chr5 47631960 47632009 -155453523 + L1PA13 LINE L1 5899 5947 -227 3987 141 19 20 chr5 47632025 47632715 -155452817 - MER50 LTR ERV1 -39 695 7 1543 78 37 0 chr5 47632715 47632932 -155452600 + L1PA13 LINE L1 5938 6162 -1 1670 160 19 4 chr5 47632937 47633206 -155452326 + AluSx SINE Alu 16 288 -24 713 129 0 9 chr5 47633224 47633340 -155452192 - LTR39-int LTR ERV1 -1495 5263 5149 * 17585 143 52 35 chr5 47633332 47637623 -155447909 - LTR39-int LTR ERV1 -2050 4708 238 975 160 17 17 chr5 47637666 47637847 -155447685 - LTR39-int LTR ERV1 -6473 285 105 929 221 28 14 chr5 47638300 47638513 -155447019 - MER58A DNA MER1_type 0 224 9 505 228 81 15 chr5 47638617 47638753 -155446779 + L1M4b LINE L1 24 168 -6691 3919 179 44 12 chr5 47638761 47639491 -155446041 - LTR39 LTR ERV1 -30 753 1 5140 139 30 32 chr5 47639511 47639836 -155445696 + MER4D LTR ERV1 1 325 -578 2004 128 50 0 chr5 47639836 47640133 -155445399 - AluSx SINE Alu 0 312 1 5140 139 30 32 chr5 47640133 47640712 -155444820 + MER4D LTR ERV1 325 903 0 2462 223 89 42 chr5 47640721 47641465 -155444067 + L1M4b LINE L1 823 1623 -5232 1703 188 3 7 chr5 47641465 47641774 -155443758 + AluJo SINE Alu 1 308 -4 2462 223 89 42 chr5 47641774 47642071 -155443461 + L1M4b LINE L1 1623 1904 -4951 1995 150 7 3 chr5 47642071 47642378 -155443154 + AluSx SINE Alu 1 308 -4 254 49 0 49 chr5 47642388 47642429 -155443103 + (GGGAA)n Simple_repeat Simple_repeat 1 39 0 1238 275 26 28 chr5 47642432 47642934 -155442598 + L1M4b LINE L1 1849 2349 -4610 3348 189 9 19 chr5 47642937 47643659 -155441873 + L1MB7 LINE L1 5219 5932 -252 323 182 0 0 chr5 47643659 47643714 -155441818 - MER3 DNA MER1_type -154 55 1 535 272 0 7 chr5 47643899 47644035 -155441497 - MLT1D LTR MaLR 0 505 371 586 189 19 0 chr5 47644916 47645022 -155440510 + MLT1D LTR MaLR 28 135 -370 273 328 109 0 chr5 47645204 47645323 -155440209 - L2 LINE L2 0 3313 3182 1512 217 7 0 chr5 47646179 47646479 -155439053 - AluJo SINE Alu -6 306 5 408 310 94 35 chr5 47646849 47647188 -155438344 + L2 LINE L2 2507 2865 -449 576 123 19 0 chr5 47647477 47647583 -155437949 - L1MB8 LINE L1 0 6178 6071 35 0 0 0 chr5 47647583 47647618 -155437914 + AT_rich Low_complexity Low_complexity 1 35 0 3534 195 39 15 chr5 47647640 47648073 -155437459 - L1MB7 LINE L1 -106 6078 5657 1673 166 58 47 chr5 47648073 47648434 -155437098 - MLT1A1 LTR MaLR 0 365 1 3534 195 39 15 chr5 47648434 47648976 -155436556 - L1MB7 LINE L1 -527 5657 5083 507 195 0 68 chr5 47649011 47649129 -155436403 + MLT1C LTR MaLR 353 462 -5 785 225 107 37 chr5 47649200 47649507 -155436025 - MLT1D LTR MaLR -134 333 1 24 32 0 0 chr5 47649592 47649623 -155435909 + AT_rich Low_complexity Low_complexity 1 31 0 1532 182 42 3 chr5 47649720 47650006 -155435526 + AluJb SINE Alu 6 302 -10 592 305 95 6 chr5 47650044 47650382 -155435150 - L1ME4a LINE L1 -234 5887 5520 2815 10 0 3 chr5 47650411 47650720 -155434812 - AluYa5 SINE Alu -3 308 1 1914 158 0 16 chr5 47651218 47651535 -155433997 - AluSx SINE Alu 0 312 1 213 246 197 16 chr5 47652345 47652406 -155433126 - L2 LINE L2 -33 3239 3168 189 0 0 0 chr5 47654491 47654512 -155431020 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1083 160 11 0 chr5 47654546 47654727 -155430805 - AluJb SINE Alu -129 183 1 471 313 16 26 chr5 47658107 47658323 -155427209 - MIR3 SINE MIR -21 241 30 25 31 0 0 chr5 47659786 47659818 -155425714 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr5 47659958 47659982 -155425550 + AT_rich Low_complexity Low_complexity 1 24 0 202 286 27 15 chr5 47660419 47660530 -155425002 + MIR SINE MIR 34 212 -50 23 78 0 0 chr5 47660568 47660619 -155424913 + AT_rich Low_complexity Low_complexity 1 51 0 1911 135 55 30 chr5 47661606 47661969 -155423563 - THE1C LTR MaLR -3 372 1 687 291 62 34 chr5 47662251 47662543 -155422989 - MLT1J LTR MaLR -211 300 1 290 310 46 11 chr5 47662629 47662716 -155422816 - MIR SINE MIR -105 157 68 604 128 0 0 chr5 47663527 47663660 -155421872 + AluSg/x SINE Alu 194 326 0 1307 153 48 71 chr5 47663674 47663942 -155421590 + AluJo SINE Alu 37 298 -14 486 76 1 40 chr5 47664495 47664591 -155420941 + L1MA4A LINE L1 5970 6072 -231 2220 128 14 8 chr5 47664633 47664986 -155420546 - THE1A LTR MaLR 0 355 1 319 276 0 0 chr5 47665357 47665433 -155420099 - MIR SINE MIR -56 152 77 22 0 0 0 chr5 47665503 47665525 -155420007 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr5 47667054 47667097 -155418435 + AT_rich Low_complexity Low_complexity 1 43 0 247 369 14 27 chr5 47668158 47668380 -155417152 + L2 LINE L2 2149 2367 -947 226 220 40 0 chr5 47669077 47669127 -155416405 + L2 LINE L2 3219 3270 -2 631 265 107 47 chr5 47669576 47669829 -155415703 - L2 LINE L2 -4 3309 3042 22 0 0 0 chr5 47670595 47670617 -155414915 + AT_rich Low_complexity Low_complexity 1 22 0 724 258 79 25 chr5 47670916 47671156 -155414376 + MIR SINE MIR 7 259 -3 284 291 166 7 chr5 47671635 47671752 -155413780 + L1MC4a LINE L1 5779 5876 -1932 204 40 0 0 chr5 47671752 47671777 -155413755 + (TG)n Simple_repeat Simple_repeat 2 26 0 284 291 166 7 chr5 47671777 47671948 -155413584 + L1MC4a LINE L1 5876 6113 -1695 294 260 41 0 chr5 47672373 47672446 -155413086 + L1MC4a LINE L1 6704 6779 -1029 778 186 0 14 chr5 47672724 47672869 -155412663 + FLAM_C SINE Alu 1 143 0 616 241 121 39 chr5 47672920 47673351 -155412181 + L1MC5 LINE L1 7452 7917 -44 365 320 122 52 chr5 47674195 47674735 -155410797 - L1M2 LINE L1 -5396 1453 876 2482 60 0 0 chr5 47675453 47675752 -155409780 + AluY SINE Alu 1 299 -12 185 261 62 15 chr5 47675868 47675933 -155409599 + L3b LINE CR1 1173 1240 -343 194 333 235 8 chr5 47676465 47676597 -155408935 + MIR3 SINE MIR 38 199 -9 413 304 71 10 chr5 47676857 47677050 -155408482 - MIR SINE MIR -4 258 51 26 50 0 0 chr5 47677130 47677170 -155408362 + AT_rich Low_complexity Low_complexity 1 40 0 2582 55 0 0 chr5 47677487 47677795 -155407737 - AluY SINE Alu -3 308 1 987 143 67 48 chr5 47678330 47678539 -155406993 - MER20 DNA MER1_type -2 217 5 237 315 65 19 chr5 47679701 47679809 -155405723 - L2 LINE L2 -218 3054 2942 2334 60 43 7 chr5 47679817 47680116 -155405416 - AluY SINE Alu 0 311 2 459 316 103 83 chr5 47680238 47680693 -155404839 - L2 LINE L2 -559 2755 2292 437 270 104 0 chr5 47680695 47680810 -155404722 + L2 LINE L2 3187 3313 0 194 182 23 45 chr5 47680841 47680885 -155404647 - L2 LINE L2 -1045 2269 2227 450 339 40 91 chr5 47680919 47681521 -155404011 - L2 LINE L2 -2657 657 87 251 385 45 0 chr5 47681806 47681962 -155403570 - L2 LINE L2 -614 2700 2538 324 326 38 0 chr5 47682136 47682268 -155403264 - MIR SINE MIR -16 246 110 1807 152 18 11 chr5 47682393 47682676 -155402856 - AluJb SINE Alu -24 288 4 346 258 42 84 chr5 47683609 47683789 -155401743 - MER5A DNA MER1_type -1 188 4 21 57 0 0 chr5 47684084 47684119 -155401413 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr5 47684379 47684402 -155401130 + AT_rich Low_complexity Low_complexity 1 23 0 705 266 13 0 chr5 47684404 47684558 -155400974 + L1MCc LINE L1 348 503 -5920 1832 266 73 65 chr5 47684635 47685448 -155400084 + L1MCc LINE L1 654 1459 -5482 1585 154 4 4 chr5 47685448 47685694 -155399838 + AluJb SINE Alu 37 282 -30 1832 266 73 65 chr5 47685694 47685994 -155399538 + L1MCc LINE L1 1459 1755 -5186 796 194 109 47 chr5 47685994 47686205 -155399327 - MER58A DNA MER1_type 0 224 1 1832 266 73 65 chr5 47686205 47686622 -155398910 + L1MCc LINE L1 1755 2201 -4740 255 143 24 0 chr5 47686633 47686675 -155398857 - MSTD LTR MaLR 0 396 354 938 223 98 65 chr5 47686810 47687147 -155398385 - MSTD LTR MaLR -48 348 1 509 276 18 0 chr5 47687147 47687310 -155398222 + L1MCc LINE L1 2395 2560 -4562 602 280 68 16 chr5 47687316 47687684 -155397848 + L1MCc LINE L1 2600 2986 -4136 1849 236 92 27 chr5 47687687 47688271 -155397261 - MLT1E3 LTR MaLR -2 622 1 277 226 48 12 chr5 47688271 47688355 -155397177 + L1MCc LINE L1 2983 3069 -4053 2123 144 0 3 chr5 47688999 47689312 -155396220 - AluJb SINE Alu 0 312 1 2104 121 7 3 chr5 47689427 47689724 -155395808 - AluSx SINE Alu -14 298 1 416 244 61 9 chr5 47692147 47692262 -155393270 - MIR SINE MIR -32 230 110 372 348 30 30 chr5 47692468 47692632 -155392900 + MIR SINE MIR 10 173 -89 1904 158 62 27 chr5 47692906 47693279 -155392253 + MLT1B LTR MaLR 1 386 -4 231 384 54 0 chr5 47693474 47693586 -155391946 + L2 LINE L2 2670 2787 -527 350 329 19 6 chr5 47694143 47694304 -155391228 + L1ME LINE L1 5558 5720 -401 337 310 17 17 chr5 47694384 47694500 -155391032 + L2 LINE L2 3196 3311 -2 6907 51 41 1 chr5 47694578 47695441 -155390091 + MER11D LTR ERVK 1 897 0 690 237 73 0 chr5 47697127 47697304 -155388228 + MER3 DNA MER1_type 3 192 -17 2398 74 3 0 chr5 47697308 47697605 -155387927 - AluY SINE Alu -13 298 1 443 255 87 19 chr5 47697809 47698017 -155387515 - L1MEc LINE L1 -4519 1877 1656 12119 62 3 2 chr5 47698018 47700397 -155385135 + L1PA7 LINE L1 3774 6154 0 250 260 15 87 chr5 47701438 47701634 -155383898 - L1M4 LINE L1 -2636 3510 3329 848 184 12 86 chr5 47701663 47701908 -155383624 - L1MB8 LINE L1 -60 6118 5892 232 258 98 18 chr5 47701929 47702092 -155383440 - L1MEc LINE L1 -5099 1106 931 2091 48 11 4 chr5 47702170 47702443 -155383089 - L1PA4 LINE L1 -2 6153 5879 2706 54 0 0 chr5 47702443 47702775 -155382757 + L1PA4 LINE L1 5560 5891 -263 354 326 54 14 chr5 47703511 47703658 -155381874 - MIR3 SINE MIR -16 192 40 234 67 44 0 chr5 47705542 47705587 -155379945 - LTR66 LTR ERVL -170 440 394 243 141 14 28 chr5 47705587 47705658 -155379874 + (TA)n Simple_repeat Simple_repeat 2 71 0 941 175 0 65 chr5 47705679 47705879 -155379653 + MLT1B LTR MaLR 1 187 -203 411 21 0 0 chr5 47708020 47708068 -155377464 + (TG)n Simple_repeat Simple_repeat 2 49 0 1509 180 10 13 chr5 47708417 47708722 -155376810 - L1MB3 LINE L1 -17 6166 5863 2162 170 21 45 chr5 47708750 47708874 -155376658 - L1MB3 LINE L1 -247 5936 5811 2053 121 0 33 chr5 47708874 47709179 -155376353 + AluSg SINE Alu 4 298 -12 2162 170 21 45 chr5 47709179 47709525 -155376007 - L1MB3 LINE L1 -372 5811 5477 1626 62 5 0 chr5 47709532 47709741 -155375791 - L1PA7 LINE L1 -1 6153 5944 1174 224 64 46 chr5 47709803 47710192 -155375340 + MSTD LTR MaLR 1 396 0 228 35 0 0 chr5 47710984 47711013 -155374519 + (TG)n Simple_repeat Simple_repeat 2 30 0 243 313 15 0 chr5 47711382 47711449 -155374083 + MIR SINE MIR 2 69 -193 1574 155 102 0 chr5 47711684 47711948 -155373584 + AluJb SINE Alu 1 291 -21 304 313 174 25 chr5 47713143 47713344 -155372188 + MIR SINE MIR 16 246 -16 22 70 0 0 chr5 47713596 47713639 -155371893 + AT_rich Low_complexity Low_complexity 1 43 0 1152 265 77 33 chr5 47713693 47713930 -155371602 + MER97c DNA MER1_type? 1 263 -827 183 42 0 0 chr5 47713930 47713954 -155371578 + (TG)n Simple_repeat Simple_repeat 1 24 0 1152 265 77 33 chr5 47713954 47714105 -155371427 + MER97c DNA MER1_type? 263 406 -684 557 311 66 55 chr5 47714900 47715247 -155370285 + MLT1L LTR MaLR 203 553 -62 1870 119 3 25 chr5 47715477 47715762 -155369770 - AluSx SINE Alu -32 280 2 2406 82 3 0 chr5 47715970 47716274 -155369258 - AluSc SINE Alu 0 309 5 212 284 171 11 chr5 47716474 47716562 -155368970 + L2 LINE L2 3170 3271 -1 197 336 112 8 chr5 47716636 47716770 -155368762 - L2 LINE L2 -507 2807 2660 7007 61 3 0 chr5 47716879 47718464 -155367068 + L1PA7 LINE L1 4566 6154 0 250 260 15 87 chr5 47719505 47719701 -155365831 - L1MCc LINE L1 -2636 4305 4124 848 184 12 86 chr5 47719730 47719975 -155365557 - L1MB8 LINE L1 -60 6118 5892 232 258 98 18 chr5 47719996 47720159 -155365373 - L1ME LINE L1 -5099 1832 1657 7661 28 0 0 chr5 47720237 47721164 -155364368 - L1PA3 LINE L1 -2 6153 5227 3076 257 82 29 chr5 47722569 47723698 -155361834 + L1MEc LINE L1 22 1209 -5187 973 286 57 25 chr5 47723700 47723940 -155361592 - L1MCc LINE L1 -4681 2441 2210 2169 132 3 0 chr5 47723940 47724251 -155361281 - AluSx SINE Alu 0 312 1 973 286 57 25 chr5 47724251 47724605 -155360927 - L1MCc LINE L1 -4912 2210 1828 273 139 46 37 chr5 47724624 47724732 -155360800 + (TTATA)n Simple_repeat Simple_repeat 3 111 0 833 293 64 14 chr5 47724770 47725185 -155360347 - L1MCc LINE L1 -4933 1490 1172 7303 171 30 11 chr5 47725209 47725371 -155360161 - L1MA8 LINE L1 -5 7307 7149 2467 61 3 0 chr5 47725371 47725667 -155359865 - AluY SINE Alu -9 302 6 7303 171 30 11 chr5 47725667 47727921 -155357611 - L1MA8 LINE L1 -163 7149 4843 995 262 40 45 chr5 47727915 47728652 -155356880 - L1MA8 LINE L1 -4784 2314 1561 * 321 374 12 18 chr5 47729229 47729392 -155356140 - L1MA8 LINE L1 -5967 1131 970 227 336 20 34 chr5 47729438 47729587 -155355945 - L1MCc LINE L1 -5279 1144 998 247 308 9 28 chr5 47729793 47729900 -155355632 - L1MCc LINE L1 -5347 1076 972 701 295 70 38 chr5 47729968 47730368 -155355164 - L1MCc LINE L1 -5987 436 24 202 141 28 42 chr5 47730415 47730486 -155355046 + (TA)n Simple_repeat Simple_repeat 2 71 0 2258 154 65 22 chr5 47730668 47731084 -155354448 - Tigger2a DNA MER2_type 0 434 1 680 129 0 0 chr5 47731110 47731211 -155354321 - HY3 scRNA scRNA 0 101 1 7576 35 0 0 chr5 47731878 47732803 -155352729 - L1PA4 LINE L1 -744 5402 4478 6001 43 28 0 chr5 47732803 47733552 -155351980 + L1PA4 LINE L1 5382 6154 -1 401 186 70 0 chr5 47736669 47736755 -155348777 - MSTD LTR MaLR 0 396 305 328 295 63 14 chr5 47736757 47736926 -155348606 - L1ME3A LINE L1 -318 5852 5676 462 272 52 0 chr5 47737488 47737624 -155347908 - L1ME3A LINE L1 -519 5643 5501 445 270 63 140 chr5 47737649 47738364 -155347168 + L1MC4 LINE L1 7098 7757 -285 375 23 0 0 chr5 47738449 47738493 -155347039 + (TG)n Simple_repeat Simple_repeat 2 45 0 491 187 23 14 chr5 47739178 47740651 -155344881 + L1P4 LINE L1 3985 5558 -608 1463 196 0 15 chr5 47740651 47740911 -155344621 + AluJb SINE Alu 14 269 -43 491 187 23 14 chr5 47740911 47740994 -155344538 + L1P4 LINE L1 5558 5639 -527 1587 246 58 51 chr5 47741124 47742247 -155343285 - L1MCc LINE L1 -4564 2377 1145 586 270 167 15 chr5 47742258 47742588 -155342944 - L1MCc LINE L1 -5930 493 114 227 311 47 28 chr5 47742760 47742866 -155342666 - MIR SINE MIR -94 168 61 488 141 0 0 chr5 47742913 47742998 -155342534 - L1MB2 LINE L1 -9 6162 6078 2676 164 5 5 chr5 47743038 47743464 -155342068 - MSTB LTR MaLR 0 426 1 8076 167 35 71 chr5 47743469 47744903 -155340629 - MSTB-int LTR MaLR -5 1646 205 577 117 0 0 chr5 47744903 47744980 -155340552 - AluS SINE Alu -234 79 3 8076 167 35 71 chr5 47744980 47745178 -155340354 - MSTB-int LTR MaLR -1446 205 1 2228 199 5 21 chr5 47745178 47745611 -155339921 - MSTB LTR MaLR 0 426 1 265 255 34 40 chr5 47745652 47745801 -155339731 - L1ME4a LINE L1 -32 6089 5942 249 373 108 7 chr5 47745852 47746131 -155339401 - L3 LINE CR1 -568 1009 703 973 255 5 0 chr5 47746710 47746914 -155338618 + MER63A DNA MER1_type 6 210 0 386 296 109 19 chr5 47748046 47748367 -155337165 - L1ME4a LINE L1 0 6121 5772 451 250 72 62 chr5 47748381 47748589 -155336943 + MER46C DNA MER2_type 1 210 -128 23 54 0 0 chr5 47748620 47748657 -155336875 + AT_rich Low_complexity Low_complexity 1 37 0 373 309 170 22 chr5 47748681 47748904 -155336628 - L1ME4a LINE L1 -365 5756 5501 23 0 0 0 chr5 47748910 47748933 -155336599 + AT_rich Low_complexity Low_complexity 1 23 0 212 171 0 0 chr5 47748949 47748990 -155336542 + T-rich Low_complexity Low_complexity 1 41 0 5932 70 37 6 chr5 47749000 47749815 -155335717 - L1PA5 LINE L1 -8 6146 5307 31 0 0 0 chr5 47749824 47749855 -155335677 + AT_rich Low_complexity Low_complexity 1 31 0 3764 78 0 2 chr5 47749961 47750463 -155335069 - L1PA7 LINE L1 0 6154 5654 28 29 0 0 chr5 47751090 47751125 -155334407 + AT_rich Low_complexity Low_complexity 1 35 0 1017 98 0 14 chr5 47751911 47752054 -155333478 - AluSg1 SINE Alu -168 141 1 275 339 50 41 chr5 47752241 47752459 -155333073 + L2 LINE L2 2550 2769 -545 306 325 111 0 chr5 47752863 47752989 -155332543 + MIR SINE MIR 31 170 -92 289 160 0 0 chr5 47754954 47755004 -155330528 - MADE1 DNA Mariner -30 50 1 5838 162 19 24 chr5 47755004 47756088 -155329444 - L1MCa LINE L1 -5328 1098 21 310 333 91 6 chr5 47756157 47756322 -155329210 + L1 LINE L1 2629 2807 -3339 27 29 0 0 chr5 47756639 47756673 -155328859 + AT_rich Low_complexity Low_complexity 1 34 0 301 320 140 81 chr5 47757530 47757802 -155327730 - L2 LINE L2 0 3272 2985 340 338 128 46 chr5 47758305 47759040 -155326492 + L2 LINE L2 675 1481 -1833 2262 72 3 0 chr5 47759040 47759331 -155326201 + AluSp SINE Alu 1 292 -21 340 338 128 46 chr5 47759331 47759393 -155326139 + L2 LINE L2 1481 1537 -1777 397 240 146 0 chr5 47760370 47760466 -155325066 - L2 LINE L2 -4 3309 3200 1314 170 32 3 chr5 47760540 47760823 -155324709 - L1MA9 LINE L1 0 6312 6022 2859 98 15 75 chr5 47760824 47761294 -155324238 - MLT2A1 LTR ERVL -2 442 1 35709 78 9 3 chr5 47761294 47765915 -155319617 - HERVL-A1 LTR ERVL 0 5654 1005 2014 84 14 3 chr5 47765915 47766264 -155319268 - HERVL-A1 LTR ERVL -4950 704 261 2164 62 11 0 chr5 47766314 47766589 -155318943 - HERVL-A1 LTR ERVL -5375 279 2 364 48 34 3 chr5 47766590 47766649 -155318883 - MLT2A1 LTR ERVL 0 444 390 209 132 26 0 chr5 47766649 47766687 -155318845 + (TA)n Simple_repeat Simple_repeat 2 40 0 238 241 23 0 chr5 47766700 47766787 -155318745 - L1MC4 LINE L1 -1340 6702 6614 2786 105 15 5 chr5 47766799 47767199 -155318333 - MLT2A1 LTR ERVL -40 404 1 2129 142 5 36 chr5 47767203 47767591 -155317941 - L1MA9 LINE L1 -296 6016 5641 305 86 0 69 chr5 47767591 47767642 -155317890 + L1PA16 LINE L1 6113 6166 0 4317 184 35 52 chr5 47767642 47768457 -155317075 - L1MA9 LINE L1 -798 5348 4521 276 30 0 0 chr5 47768457 47768490 -155317042 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 1878 144 0 7 chr5 47768490 47768774 -155316758 - AluSx SINE Alu -30 282 1 4317 184 35 52 chr5 47768774 47768948 -155316584 - L1MA9 LINE L1 -1624 4522 4377 1694 138 28 38 chr5 47768948 47769237 -155316295 - AluSx SINE Alu -26 286 1 4317 184 35 52 chr5 47769237 47769410 -155316122 - L1MA9 LINE L1 -1769 4377 4203 262 319 17 17 chr5 47769477 47769593 -155315939 + MIR SINE MIR 141 256 -6 223 96 27 55 chr5 47769903 47769976 -155315556 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 188 200 18 91 chr5 47770009 47770064 -155315468 + L2 LINE L2 3263 3313 0 206 326 43 35 chr5 47770315 47770456 -155315076 - MIR SINE MIR -61 201 60 233 386 114 19 chr5 47770487 47770697 -155314835 - MLT1K LTR MaLR -356 232 3 189 0 0 0 chr5 47770749 47770770 -155314762 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2042 46 11 0 chr5 47770775 47771035 -155314497 - L1PA5 LINE L1 -13 6141 5879 2706 54 0 0 chr5 47771035 47771367 -155314165 + L1PA5 LINE L1 5560 5891 -263 354 326 54 14 chr5 47772104 47772251 -155313281 - MIR3 SINE MIR -16 192 40 238 109 0 0 chr5 47774129 47774175 -155311357 - LTR66 LTR ERVL -170 440 395 * 243 141 14 28 chr5 47774174 47774245 -155311287 + (TA)n Simple_repeat Simple_repeat 2 71 0 949 175 0 65 chr5 47774266 47774466 -155311066 + MLT1B LTR MaLR 1 187 -203 429 20 0 0 chr5 47776607 47776657 -155308875 + (TG)n Simple_repeat Simple_repeat 2 51 0 1519 180 10 13 chr5 47777006 47777311 -155308221 - L1MB3 LINE L1 -17 6166 5863 2193 170 21 45 chr5 47777339 47777463 -155308069 - L1MB3 LINE L1 -247 5936 5811 2021 121 0 33 chr5 47777463 47777768 -155307764 + AluSg SINE Alu 4 298 -12 2193 170 21 45 chr5 47777768 47778114 -155307418 - L1MB3 LINE L1 -372 5811 5477 1614 62 5 0 chr5 47778121 47778330 -155307202 - L1PA7 LINE L1 -1 6153 5944 1151 224 64 46 chr5 47778392 47778781 -155306751 + MSTD LTR MaLR 1 396 0 228 35 0 0 chr5 47779567 47779596 -155305936 + (TG)n Simple_repeat Simple_repeat 2 30 0 239 313 15 0 chr5 47779965 47780032 -155305500 + MIR SINE MIR 2 69 -193 1545 155 102 0 chr5 47780267 47780531 -155305001 + AluJb SINE Alu 1 291 -21 302 313 174 25 chr5 47781726 47781927 -155303605 + MIR SINE MIR 16 246 -16 22 70 0 0 chr5 47782179 47782222 -155303310 + AT_rich Low_complexity Low_complexity 1 43 0 1187 268 77 31 chr5 47782276 47782513 -155303019 + MER97a DNA MER1_type? 1 264 -630 183 42 0 0 chr5 47782513 47782537 -155302995 + (TG)n Simple_repeat Simple_repeat 1 24 0 1187 268 77 31 chr5 47782537 47782687 -155302845 + MER97a DNA MER1_type? 264 406 -488 578 311 66 55 chr5 47783483 47783830 -155301702 + MLT1L LTR MaLR 203 553 -62 417 247 141 55 chr5 47783805 47784096 -155301436 - Charlie7 DNA MER1_type -188 2424 2109 * 207 0 0 0 chr5 47784639 47784662 -155300870 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3069 153 22 13 chr5 47784678 47785233 -155300299 - L1PA16 LINE L1 0 6166 5607 207 198 41 41 chr5 47785327 47785448 -155300084 + (TATAA)n Simple_repeat Simple_repeat 3 123 0 388 320 201 8 chr5 47785538 47785782 -155299750 + L1M4 LINE L1 3628 3918 -2228 506 213 57 0 chr5 47786230 47786352 -155299180 + MER3 DNA MER1_type 41 122 -87 1104 181 122 0 chr5 47786361 47786648 -155298884 + MER3 DNA MER1_type 2264 2585 0 2105 119 3 28 chr5 47786648 47786968 -155298564 + AluSx SINE Alu 1 312 0 345 302 82 33 chr5 47787705 47787887 -155297645 - MLT1J LTR MaLR 0 511 321 308 214 34 34 chr5 47787950 47788039 -155297493 - MLT1J LTR MaLR -325 186 98 1363 335 118 25 chr5 47788087 47788850 -155296682 - L2 LINE L2 -218 3054 2220 17810 159 25 17 chr5 47791655 47797154 -155288378 - L1MA2 LINE L1 0 7723 2270 7835 32 0 1 chr5 47797154 47798861 -155286671 + L1PA4 LINE L1 4447 6152 -3 17810 159 25 17 chr5 47798861 47799299 -155286233 - L1MA2 LINE L1 -5453 2270 1837 387 0 0 0 chr5 47799299 47799342 -155286190 + (TG)n Simple_repeat Simple_repeat 2 44 0 17810 159 25 17 chr5 47799342 47800619 -155284913 - L1MA2 LINE L1 -5886 1837 459 7842 123 37 4 chr5 47800621 47802666 -155282866 - L1PA8 LINE L1 -6 6166 4051 2819 203 54 4 chr5 47802666 47803371 -155282161 - Charlie1 DNA MER1_type -715 2046 1 249 203 72 0 chr5 47803653 47803722 -155281810 + MER58B DNA MER1_type 127 326 -15 3482 161 20 2 chr5 47804657 47805249 -155280283 + LTR26 LTR ERV1 1 603 0 2247 160 28 14 chr5 47805714 47806151 -155279381 - L1MA3 LINE L1 -3 6302 5860 483 300 59 5 chr5 47806577 47806795 -155278737 + L2 LINE L2 2782 3009 -304 1583 208 185 55 chr5 47806859 47807389 -155278143 + MLT1E1 LTR MaLR 56 654 0 588 291 35 28 chr5 47807393 47807647 -155277885 + L2 LINE L2 3058 3313 0 33 43 0 0 chr5 47808854 47808901 -155276631 + AT_rich Low_complexity Low_complexity 1 47 0 24 0 0 0 chr5 47809239 47809263 -155276269 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr5 47809535 47809571 -155275961 + AT_rich Low_complexity Low_complexity 1 36 0 396 237 42 89 chr5 47809659 47809849 -155275683 - MER112 DNA MER1_type -25 235 55 421 320 103 0 chr5 47809951 47810154 -155275378 + MIR SINE MIR 10 233 -29 8535 241 61 10 chr5 47810559 47813271 -155272261 + L1M4 LINE L1 2402 5253 -893 192 152 0 0 chr5 47814068 47814101 -155271431 + GA-rich Low_complexity Low_complexity 4 36 0 836 255 51 56 chr5 47814260 47814987 -155270545 - L2 LINE L2 0 3313 2040 1416 258 63 7 chr5 47815153 47815598 -155269934 + L1PA12 LINE L1 1 470 -7111 * 5250 135 28 27 chr5 47815594 47816162 -155269370 + L1PA15 LINE L1 5200 5770 -395 1370 207 70 0 chr5 47816162 47816433 -155269099 + AluJb SINE Alu 3 292 -20 5250 135 28 27 chr5 47816433 47816829 -155268703 + L1PA15 LINE L1 5770 6164 -1 2693 154 56 33 chr5 47816993 47817474 -155268058 - Ricksha DNA DNA -1547 499 8 419 274 121 56 chr5 47820466 47820814 -155264718 - L2 LINE L2 0 3313 2853 3440 226 94 16 chr5 47820994 47821803 -155263729 + Charlie2a DNA MER1_type 1570 2505 -357 189 74 0 0 chr5 47821803 47821830 -155263702 + (TG)n Simple_repeat Simple_repeat 2 28 0 3440 226 94 16 chr5 47821830 47822218 -155263314 + Charlie2a DNA MER1_type 2505 2861 -1 26 0 0 0 chr5 47822907 47822933 -155262599 + AT_rich Low_complexity Low_complexity 1 26 0 871 112 16 0 chr5 47823559 47823684 -155261848 - AluSg/x SINE Alu -19 293 167 663 263 78 4 chr5 47823725 47823968 -155261564 - L1ME3 LINE L1 -42 6120 5860 1883 152 9 9 chr5 47824076 47824392 -155261140 - L1MB1 LINE L1 -162 6006 5691 750 152 38 0 chr5 47824394 47824526 -155261006 + L1MB1 LINE L1 6023 6159 -9 663 282 52 20 chr5 47824711 47824963 -155260569 + MLT1I LTR MaLR 147 406 -3 30 59 0 0 chr5 47825259 47825310 -155260222 + AT_rich Low_complexity Low_complexity 1 51 0 2112 91 21 3 chr5 47825448 47825733 -155259799 - AluSg SINE Alu -20 290 1 187 171 0 0 chr5 47826905 47826940 -155258592 - MIR SINE MIR -55 207 173 2843 215 54 39 chr5 47827133 47827947 -155257585 + LTR1B LTR ERV1 1 826 0 2143 130 12 6 chr5 47827997 47828343 -155257189 + L1PA14 LINE L1 5810 6157 -4 21 0 0 0 chr5 47829076 47829097 -155256435 + AT_rich Low_complexity Low_complexity 1 21 0 3074 179 89 32 chr5 47829258 47829402 -155256130 + L1MB1 LINE L1 4464 4598 -1570 2162 128 0 0 chr5 47829402 47829698 -155255834 + AluSg SINE Alu 1 296 -14 3074 179 89 32 chr5 47829698 47830938 -155254594 + L1MB1 LINE L1 4598 5933 -235 379 286 62 29 chr5 47830974 47831215 -155254317 - L1ME4a LINE L1 -155 5966 5718 471 233 27 48 chr5 47831253 47831399 -155254133 - MIR SINE MIR -7 255 113 241 288 0 15 chr5 47831715 47831781 -155253751 + MIR SINE MIR 194 258 -4 342 338 34 14 chr5 47831840 47831988 -155253544 - L1ME4a LINE L1 -1101 5045 4895 2632 164 72 8 chr5 47832063 47832550 -155252982 + MER44D DNA MER2_type 2 574 -31 420 20 0 0 chr5 47832561 47832610 -155252922 + (TG)n Simple_repeat Simple_repeat 2 50 0 21 36 0 0 chr5 47832705 47832733 -155252799 + AT_rich Low_complexity Low_complexity 1 28 0 1312 137 13 4 chr5 47832733 47832960 -155252572 - L1MA5A LINE L1 -5 6292 6064 30 59 0 0 chr5 47833865 47833916 -155251616 + AT_rich Low_complexity Low_complexity 1 51 0 11619 177 44 15 chr5 47834290 47836413 -155249119 - L1MA3 LINE L1 0 6305 4025 902 15 23 30 chr5 47836413 47836546 -155248986 + (TTTC)n Simple_repeat Simple_repeat 2 133 0 11619 177 44 15 chr5 47836546 47838032 -155247500 - L1MA3 LINE L1 -2280 4025 2584 819 322 202 28 chr5 47838033 47838826 -155246706 - L2 LINE L2 -495 2819 1889 183 42 0 0 chr5 47839155 47839179 -155246353 + (TG)n Simple_repeat Simple_repeat 2 25 0 235 272 194 19 chr5 47839202 47839305 -155246227 - MER5B DNA MER1_type -6 172 52 2737 257 71 42 chr5 47840078 47840955 -155244577 + L1MB8 LINE L1 12 913 -5946 1865 177 36 8 chr5 47840980 47841342 -155244190 - MLT1B LTR MaLR -18 372 1 544 244 29 101 chr5 47841858 47842096 -155243436 + L1MB8 LINE L1 1205 1425 -5434 * 3129 249 94 17 chr5 47842089 47843392 -155242140 + L1MB8 LINE L1 3326 4728 -2229 1189 129 5 10 chr5 47843395 47843596 -155241936 - MER6 DNA MER2_type 0 865 666 4068 237 16 27 chr5 47843596 47844567 -155240965 + L1PA12 LINE L1 1 961 -6620 * 5384 148 30 29 chr5 47844566 47845568 -155239964 + L1P LINE L1 3319 4321 -1825 42161 38 22 1 chr5 47845574 47851588 -155233944 + L1PA3 LINE L1 13 6154 -1 1266 166 0 36 chr5 47851590 47851843 -155233689 + L1P LINE L1 4303 4546 -1600 * 4028 204 21 13 chr5 47851842 47852922 -155232610 + L1MB8 LINE L1 5897 6986 -3 186 279 103 29 chr5 47854946 47855014 -155230518 - MIR SINE MIR -110 98 26 307 264 40 56 chr5 47855960 47856085 -155229447 + MIR SINE MIR 74 196 -66 22 35 0 0 chr5 47856091 47856120 -155229412 + AT_rich Low_complexity Low_complexity 1 29 0 1813 120 3 14 chr5 47856125 47856408 -155229124 + AluSx SINE Alu 33 312 0 302 275 85 47 chr5 47856410 47856668 -155228864 + L1MC5 LINE L1 7650 7917 -44 1992 116 10 7 chr5 47856682 47856812 -155228720 + AluSg SINE Alu 1 129 -181 249 57 0 0 chr5 47856812 47856847 -155228685 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1992 116 10 7 chr5 47856847 47857008 -155228524 + AluSg SINE Alu 129 293 -17 264 114 0 0 chr5 47857401 47857436 -155228096 + MER92B LTR ERV1 1 35 -601 1412 146 0 24 chr5 47858727 47858940 -155226592 - AluJo SINE Alu -104 208 1 286 226 0 0 chr5 47859347 47859409 -155226123 + MER92C LTR ERV1 491 552 -2 431 238 173 28 chr5 47861316 47861530 -155224002 - MIR SINE MIR 0 262 18 1963 193 3 11 chr5 47862258 47862626 -155222906 - MLT1A1 LTR MaLR 0 365 1 221 311 40 27 chr5 47862803 47862877 -155222655 + L2 LINE L2 3198 3272 0 13616 193 30 18 chr5 47863098 47865870 -155219662 - L1M1 LINE L1 -486 6050 3255 1886 156 0 47 chr5 47865870 47866191 -155219341 - AluSx SINE Alu -6 306 1 13616 193 30 18 chr5 47866191 47867266 -155218266 - L1M1 LINE L1 -3281 3255 2195 10717 241 58 30 chr5 47867267 47867873 -155217659 - L1P4 LINE L1 -531 7054 6467 4061 98 6 44 chr5 47867873 47868503 -155217029 + LTR14B LTR ERVK 3 608 0 10717 241 58 30 chr5 47868503 47868948 -155216584 - L1P4 LINE L1 -1118 6467 6036 2409 136 8 0 chr5 47868948 47869316 -155216216 + THE1C LTR MaLR 1 371 -4 9327 119 40 45 chr5 47869320 47870909 -155214623 + THE1C-int LTR MaLR 1 1580 0 1860 137 99 9 chr5 47870909 47871253 -155214279 + THE1C LTR MaLR 1 375 0 10717 241 58 30 chr5 47871253 47873326 -155212206 - L1P4 LINE L1 -1551 6034 4021 2158 120 0 13 chr5 47873326 47873627 -155211905 - AluSg SINE Alu -13 297 1 10717 241 58 30 chr5 47873627 47875101 -155210431 - L1P4 LINE L1 -3564 4021 1898 484 311 82 41 chr5 47875668 47875983 -155209549 - L1M1 LINE L1 -5614 689 362 429 298 152 21 chr5 47876021 47876403 -155209129 - L1MEd LINE L1 -5666 453 22 38 85 0 0 chr5 47876543 47876637 -155208895 + AT_rich Low_complexity Low_complexity 1 94 0 203 363 55 0 chr5 47876691 47876782 -155208750 + L2 LINE L2 3175 3270 -2 3807 204 31 45 chr5 47877061 47877228 -155208304 + MST-int LTR MaLR 45 213 -1438 3224 102 29 20 chr5 47877228 47877716 -155207816 + LTR22B LTR ERVK 1 492 0 3807 204 31 45 chr5 47877716 47878507 -155207025 + MST-int LTR MaLR 213 990 -661 286 211 0 0 chr5 47878514 47878571 -155206961 + MSTB1 LTR MaLR 327 383 -49 330 336 111 61 chr5 47878853 47879195 -155206337 + L2 LINE L2 2912 3270 -2 7929 111 11 19 chr5 47879240 47882198 -155203334 + HERV9 LTR ERV1 1 2468 0 * 15861 76 4 8 chr5 47882198 47884393 -155201139 + HERV9 LTR ERV1 2758 4944 -3455 783 162 46 46 chr5 47884394 47884696 -155200836 + HERV9 LTR ERV1 840 1141 -5755 278 226 0 0 chr5 47884694 47884756 -155200776 + HERV9 LTR ERV1 7503 7564 -835 * 4266 93 2 2 chr5 47884752 47885362 -155200170 + HERV9 LTR ERV1 7789 8398 -1 2811 82 181 145 chr5 47885363 47886030 -155199502 + LTR12 LTR ERV1 1 691 -23 26 74 0 0 chr5 47887312 47887366 -155198166 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr5 47889409 47889431 -155196101 + AT_rich Low_complexity Low_complexity 1 22 0 624 213 51 41 chr5 47889659 47889856 -155195676 - LTR16A1 LTR ERVL -11 446 248 1244 329 87 30 chr5 47890488 47891748 -155193784 - HERVL LTR ERVL -699 4955 3624 399 296 52 34 chr5 47891797 47892030 -155193502 - HERVL LTR ERVL -2430 2566 2330 1360 144 34 58 chr5 47892044 47892540 -155192992 - MSTA LTR MaLR 0 428 1 346 342 0 0 chr5 47892540 47892657 -155192875 - HERVL LTR ERVL -3513 2251 2135 1752 132 149 14 chr5 47892684 47893048 -155192484 - MSTA LTR MaLR -15 413 1 250 356 30 0 chr5 47893075 47893207 -155192325 - HERVL LTR ERVL -2996 2000 1865 720 336 54 44 chr5 47893236 47893918 -155191614 - HERVL LTR ERVL -4207 789 101 2314 92 10 79 chr5 47893967 47894358 -155191174 + THE1B LTR MaLR 1 364 0 1365 263 38 8 chr5 47894430 47894826 -155190706 - LTR16A1 LTR ERVL -6 451 44 310 291 31 13 chr5 47894997 47895171 -155190361 + MLT1I LTR MaLR 244 409 0 372 312 64 9 chr5 47895211 47895320 -155190212 - MIR SINE MIR -57 151 37 451 317 32 0 chr5 47895419 47895542 -155189990 - L2 LINE L2 0 3313 3187 238 381 24 0 chr5 47896111 47896195 -155189337 - L2 LINE L2 -53 3219 3134 260 219 14 14 chr5 47896332 47896405 -155189127 + HsTC2 DNA Tc2 13 85 -1813 274 153 83 28 chr5 47896510 47896582 -155188950 + HsTC2 DNA Tc2 1808 1883 -15 405 0 0 0 chr5 47897201 47897246 -155188286 + (TG)n Simple_repeat Simple_repeat 2 46 0 226 158 79 13 chr5 47898191 47898267 -155187265 - Charlie5 DNA MER1_type -119 2493 2413 22 0 0 0 chr5 47898268 47898290 -155187242 + AT_rich Low_complexity Low_complexity 1 22 0 1521 207 42 8 chr5 47898353 47898591 -155186941 + L1M3 LINE L1 4989 5217 -951 2099 106 0 3 chr5 47898591 47898874 -155186658 + AluSg SINE Alu 29 310 0 1521 207 42 8 chr5 47898874 47899242 -155186290 + L1M3 LINE L1 5217 5606 -562 641 220 58 95 chr5 47899259 47899554 -155185978 + L1M1 LINE L1 681 964 -6245 1452 200 129 0 chr5 47899555 47899920 -155185612 - MSTB1 LTR MaLR -20 412 1 9185 206 31 17 chr5 47899943 47901540 -155183992 + L1M1 LINE L1 1189 2831 -4377 288 0 0 0 chr5 47901540 47901572 -155183960 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 9185 206 31 17 chr5 47901572 47902597 -155182935 + L1M1 LINE L1 2831 3841 -3367 356 83 0 0 chr5 47902599 47902647 -155182885 - L1PA16 LINE L1 -221 5945 5898 1258 111 10 30 chr5 47902647 47902844 -155182688 + L1PA16 LINE L1 5973 6166 0 11228 181 22 17 chr5 47903095 47904535 -155180997 + L1M1 LINE L1 3823 5290 -2075 2413 74 0 0 chr5 47904535 47904832 -155180700 - AluY SINE Alu -13 298 2 11228 181 22 17 chr5 47904832 47906195 -155179337 + L1M1 LINE L1 5290 6645 -720 1351 153 52 64 chr5 47906222 47906548 -155178984 - LTR1 LTR ERV1 -463 322 1 2408 68 10 0 chr5 47908282 47908590 -155176942 + AluY SINE Alu 1 311 0 1937 118 7 7 chr5 47908893 47909188 -155176344 + AluSp SINE Alu 27 313 0 25 0 0 0 chr5 47909532 47909557 -155175975 + AT_rich Low_complexity Low_complexity 1 25 0 2426 55 0 3 chr5 47909998 47910288 -155175244 + AluY SINE Alu 6 294 -17 4520 208 36 7 chr5 47910711 47911987 -155173545 + L1MC2 LINE L1 5023 6331 -13 25 0 0 0 chr5 47911987 47912012 -155173520 + AT_rich Low_complexity Low_complexity 1 25 0 372 328 23 8 chr5 47912089 47912220 -155173312 + MIR3 SINE MIR 12 144 -64 1953 126 3 14 chr5 47912334 47912652 -155172880 - AluSx SINE Alu 0 315 1 29 0 0 0 chr5 47913424 47913453 -155172079 + AT_rich Low_complexity Low_complexity 1 29 0 1406 218 100 52 chr5 47913495 47913977 -155171555 - MLT1D LTR MaLR 0 505 1 241 241 52 78 chr5 47915112 47915263 -155170269 - MER5A DNA MER1_type -10 179 26 1984 142 7 10 chr5 47915866 47916176 -155169356 + AluSg SINE Alu 1 309 -1 1778 160 144 8 chr5 47916323 47916698 -155168834 + MSTA LTR MaLR 3 428 0 8791 149 11 35 chr5 47916700 47918311 -155167221 + MSTA-int LTR MaLR 3 1574 -6 1723 151 133 18 chr5 47918321 47918637 -155166895 + MSTA LTR MaLR 1 370 -58 6208 89 0 0 chr5 47918637 47919712 -155165820 - L1PA10 LINE L1 0 6168 5094 1723 151 133 18 chr5 47919712 47919779 -155165753 + MSTA LTR MaLR 370 428 0 195 280 20 0 chr5 47919919 47919969 -155165563 - MER5A DNA MER1_type -135 54 4 24 0 0 0 chr5 47920041 47920065 -155165467 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr5 47921863 47921900 -155163632 + AT_rich Low_complexity Low_complexity 1 37 0 293 278 41 0 chr5 47921933 47922030 -155163502 + L1ME LINE L1 5650 5750 -371 35 0 0 0 chr5 47922166 47922201 -155163331 + AT_rich Low_complexity Low_complexity 1 35 0 1753 150 27 40 chr5 47922338 47922638 -155162894 + AluJb SINE Alu 1 296 -16 1038 179 80 19 chr5 47922638 47922951 -155162581 - L1M4 LINE L1 -841 5305 4974 565 229 0 47 chr5 47922949 47923141 -155162391 - L1MC4 LINE L1 -410 7632 7450 * 553 266 115 49 chr5 47923168 47923473 -155162059 - L1MC4a LINE L1 -1208 6600 6276 196 100 140 20 chr5 47923509 47923609 -155161923 + (TTTAA)n Simple_repeat Simple_repeat 5 116 0 1401 247 32 66 chr5 47923758 47924316 -155161216 - L1MC4a LINE L1 -1756 6052 5514 2006 137 0 0 chr5 47924398 47924707 -155160825 - AluSx SINE Alu 0 313 5 479 296 84 64 chr5 47927204 47927657 -155157875 + L2 LINE L2 2326 2787 -527 349 382 85 20 chr5 47927798 47927997 -155157535 + L2 LINE L2 2989 3200 -72 1558 246 87 54 chr5 47928097 47928169 -155157363 - L1ME2 LINE L1 -13 6220 6152 1615 174 7 7 chr5 47928169 47928451 -155157081 + AluJo SINE Alu 1 282 -30 1558 246 87 54 chr5 47928451 47928467 -155157065 - L1ME2 LINE L1 -81 6152 6138 472 88 12 12 chr5 47928467 47928547 -155156985 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 1558 246 87 54 chr5 47928547 47929064 -155156468 - L1ME2 LINE L1 -95 6138 5640 270 0 0 0 chr5 47929064 47929094 -155156438 + (ATG)n Simple_repeat Simple_repeat 2 31 0 2185 95 0 11 chr5 47929099 47929384 -155156148 - AluSc SINE Alu -27 282 1 1558 246 87 54 chr5 47929384 47929808 -155155724 - L1ME2 LINE L1 -596 5637 5228 2164 110 0 31 chr5 47929808 47930125 -155155407 - AluSq SINE Alu -6 307 1 1558 246 87 54 chr5 47930125 47930638 -155154894 - L1ME2 LINE L1 -1005 5228 4508 1829 156 3 6 chr5 47930643 47930963 -155154569 - L1MA4A LINE L1 -5 6298 5980 2721 177 74 30 chr5 47930989 47933320 -155152212 - L1MA4A LINE L1 -467 5836 3247 404 336 27 7 chr5 47933321 47933467 -155152065 + MLT2F LTR ERVL 288 436 -227 1384 258 66 12 chr5 47933470 47933967 -155151565 - L1ME2 LINE L1 -3159 3056 2533 225 94 0 0 chr5 47933967 47933999 -155151533 + (T)n Simple_repeat Simple_repeat 1 32 0 6474 14 1 0 chr5 47933999 47934737 -155150795 - L1HS LINE L1 0 6155 5417 8755 17 0 0 chr5 47934738 47935801 -155149731 + L1P1 LINE L1 4370 5432 -723 1026 247 48 8 chr5 47935794 47936324 -155149208 - L1ME2 LINE L1 -3670 2545 1996 * 201 349 12 12 chr5 47937155 47937241 -155148291 + L2 LINE L2 3220 3305 -8 738 307 99 19 chr5 47938338 47938700 -155146832 + L2 LINE L2 2923 3313 0 197 301 43 32 chr5 47939805 47939898 -155145634 + MIR3 SINE MIR 106 199 -9 25 31 0 0 chr5 47940135 47940167 -155145365 + AT_rich Low_complexity Low_complexity 1 32 0 7490 33 0 1 chr5 47940231 47941131 -155144401 - L1PA4 LINE L1 -3 6152 5254 1818 36 0 0 chr5 47941136 47941361 -155144171 + L1P LINE L1 4996 5220 -926 221 167 19 0 chr5 47941855 47941909 -155143623 + (TTAA)n Simple_repeat Simple_repeat 2 56 0 184 344 103 56 chr5 47942021 47942448 -155143084 + L2 LINE L2 2825 3271 -1 314 300 133 0 chr5 47943007 47943127 -155142405 + MIR3 SINE MIR 15 150 -58 1094 166 6 6 chr5 47943201 47943382 -155142150 - MSTC LTR MaLR -2 426 246 1761 144 45 51 chr5 47944225 47944271 -155141261 - THE1C LTR MaLR 0 375 330 1894 130 7 24 chr5 47944271 47944563 -155140969 + AluSx SINE Alu 7 293 -19 1761 144 45 51 chr5 47944563 47944890 -155140642 - THE1C LTR MaLR -45 330 4 9090 123 84 8 chr5 47944893 47946362 -155139170 - THE1C-int LTR MaLR 0 1580 1 2364 131 11 8 chr5 47946362 47946736 -155138796 - THE1C LTR MaLR 0 375 1 2356 87 3 0 chr5 47947323 47947633 -155137899 - AluY SINE Alu 0 311 1 3453 73 7 0 chr5 47948054 47948507 -155137025 + L1PA8 LINE L1 5708 6163 -9 5266 156 38 26 chr5 47948639 47948712 -155136820 + L1MC2 LINE L1 5289 5360 -984 592 76 0 0 chr5 47948712 47948791 -155136741 + MADE1 DNA Mariner 2 80 0 5266 156 38 26 chr5 47948791 47949759 -155135773 + L1MC2 LINE L1 5360 6343 -1 22 0 0 0 chr5 47950085 47950107 -155135425 + AT_rich Low_complexity Low_complexity 1 22 0 337 314 99 52 chr5 47950217 47950580 -155134952 - L1M4 LINE L1 -3006 3140 2761 2206 159 12 56 chr5 47950624 47951038 -155134494 + L1M1 LINE L1 10 405 -7160 206 340 0 0 chr5 47951204 47951307 -155134225 + T-rich Low_complexity Low_complexity 1 103 0 561 304 124 0 chr5 47952055 47952272 -155133260 - MIR SINE MIR -12 250 7 494 320 11 56 chr5 47952853 47953031 -155132501 - MIR3 SINE MIR -7 201 32 654 294 65 17 chr5 47953938 47954169 -155131363 + MIR SINE MIR 8 249 -13 826 281 53 4 chr5 47954856 47955084 -155130448 + MIR SINE MIR 3 241 -21 1611 243 49 20 chr5 47956210 47956659 -155128873 + MLT1C LTR MaLR 6 467 0 284 136 11 171 chr5 47957102 47957140 -155128392 + MIR SINE MIR 164 182 -80 2034 136 7 0 chr5 47957140 47957434 -155128098 + AluSx SINE Alu 1 296 -16 284 136 11 171 chr5 47957434 47957483 -155128049 + MIR SINE MIR 182 237 -25 1675 188 0 0 chr5 47958777 47959090 -155126442 + AluJb SINE Alu 1 313 0 535 230 0 18 chr5 47959643 47959756 -155125776 + LTR33 LTR ERVL 402 512 -9 1846 156 146 13 chr5 47960158 47960536 -155124996 - MSTA LTR MaLR 0 428 1 505 317 45 15 chr5 47960960 47961162 -155124370 - MIR SINE MIR -50 212 5 29 28 0 0 chr5 47961424 47961460 -155124072 + AT_rich Low_complexity Low_complexity 1 36 0 1642 135 17 10 chr5 47962145 47962441 -155123091 + AluY SINE Alu 1 298 -13 418 257 35 47 chr5 47962822 47962993 -155122539 - MIR SINE MIR 0 262 94 2183 142 94 8 chr5 47965197 47965591 -155119941 + MSTA LTR MaLR 1 428 0 23 33 0 0 chr5 47965997 47966027 -155119505 + AT_rich Low_complexity Low_complexity 1 30 0 287 336 84 8 chr5 47966274 47966405 -155119127 + MIR3 SINE MIR 41 181 -27 1422 203 65 4 chr5 47966405 47966681 -155118851 - AluJb SINE Alu -9 293 1 539 231 145 32 chr5 47966849 47967070 -155118462 + L1ME3A LINE L1 5711 5956 -214 401 239 8 0 chr5 47967126 47967243 -155118289 + (TA)n Simple_repeat Simple_repeat 2 119 0 200 432 20 7 chr5 47968603 47968751 -155116781 + MIR3 SINE MIR 40 189 -19 21 36 0 0 chr5 47968776 47968804 -155116728 + AT_rich Low_complexity Low_complexity 1 28 0 341 325 85 48 chr5 47968948 47969302 -155116230 - MLT1J2 LTR MaLR -2 448 82 22 0 0 0 chr5 47969887 47969909 -155115623 + AT_rich Low_complexity Low_complexity 1 22 0 793 231 35 15 chr5 47969949 47969984 -155115548 - MLT2B3 LTR ERVL 0 554 521 473 71 14 0 chr5 47969984 47970054 -155115478 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 793 231 35 15 chr5 47970054 47970217 -155115315 - MLT2B3 LTR ERVL -33 521 352 216 0 0 0 chr5 47970827 47970851 -155114681 + (TTC)n Simple_repeat Simple_repeat 1 24 0 342 0 0 0 chr5 47970851 47970889 -155114643 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1879 86 4 0 chr5 47970890 47971145 -155114387 - L1PA6 LINE L1 -17 6137 5882 1468 224 70 6 chr5 47971446 47971789 -155113743 + MLT1A1 LTR MaLR 1 365 0 403 342 117 48 chr5 47972201 47972891 -155112641 + L1MEc LINE L1 45 782 -5614 842 244 103 55 chr5 47972909 47973455 -155112077 + L1MEc LINE L1 1914 2485 -3911 3629 260 88 38 chr5 47973459 47975356 -155110176 + L1MEc LINE L1 2547 4538 -1677 207 0 0 0 chr5 47975361 47975384 -155110148 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 6749 136 18 13 chr5 47975399 47976996 -155108536 - L1MA1 LINE L1 0 7721 6116 5424 34 3 11 chr5 47977018 47977675 -155107857 - L1PA4 LINE L1 -49 6106 5455 * 5718 32 1 0 chr5 47977669 47978365 -155107167 + L1P LINE L1 4707 5403 -743 11820 174 19 8 chr5 47978388 47979696 -155105836 - L1MA1 LINE L1 -1447 6118 4825 1863 101 45 0 chr5 47979696 47979982 -155105550 - L1PA13 LINE L1 -5 6158 5860 11820 174 19 8 chr5 47979982 47982404 -155103128 - L1MA1 LINE L1 -2740 4825 2348 319 264 40 56 chr5 47985545 47985670 -155099862 + MIR SINE MIR 74 196 -66 22 35 0 0 chr5 47985676 47985705 -155099827 + AT_rich Low_complexity Low_complexity 1 29 0 1783 120 3 14 chr5 47985710 47985993 -155099539 + AluSx SINE Alu 33 312 0 325 275 85 47 chr5 47985995 47986253 -155099279 + L1MC5 LINE L1 7650 7917 -44 910 92 0 15 chr5 47986267 47986398 -155099134 + AluSg SINE Alu 1 129 -181 1393 146 0 24 chr5 47987467 47987680 -155097852 - AluJo SINE Alu -104 208 1 289 226 0 0 chr5 47988086 47988148 -155097384 + MER92C LTR ERV1 491 552 -2 322 211 187 16 chr5 47990055 47990178 -155095354 - MIR SINE MIR 0 262 119 278 156 73 110 chr5 48090333 48090442 -154995090 + MER104 DNA Tc2 37 141 -39 5426 67 5 158 chr5 48090442 48091563 -154993969 + SVA Other Other 10 959 -427 2560 92 19 36 chr5 48091564 48092031 -154993501 + SVA Other Other 6 464 -922 2998 176 82 8 chr5 48092136 48092754 -154992778 + L1MB3 LINE L1 5506 6169 -14 1861 183 0 31 chr5 48094107 48094160 -154991372 + MER1B DNA MER1_type 2 55 -2657 2285 86 122 0 chr5 48094160 48094496 -154991036 + MER51B LTR ERV1 1 377 0 1861 183 0 31 chr5 48094496 48094791 -154990741 + MER1B DNA MER1_type 55 339 0 412 67 0 100 chr5 48094946 48095036 -154990496 + AluJ/FRAM SINE Alu 232 312 0 1088 145 0 11 chr5 48095333 48095519 -154990013 + AluSg SINE Alu 127 310 0 224 284 27 14 chr5 48096513 48096587 -154988945 + MIR SINE MIR 47 121 -141 22 0 0 0 chr5 48097604 48097626 -154987906 + AT_rich Low_complexity Low_complexity 1 22 0 376 293 70 35 chr5 48098805 48099146 -154986386 - L1M4 LINE L1 -2091 4055 3703 1110 108 0 0 chr5 48100403 48100551 -154984981 + AluSg SINE Alu 8 155 -155 375 23 0 0 chr5 48100956 48101000 -154984532 + (TC)n Simple_repeat Simple_repeat 1 44 0 1151 98 4 1 chr5 48101001 48101247 -154984285 - AluSc SINE Alu -31 278 2 21 0 0 0 chr5 48101959 48101980 -154983552 + AT_rich Low_complexity Low_complexity 1 21 0 1980 114 26 3 chr5 48102618 48102924 -154982608 + AluSp SINE Alu 1 313 0 1196 229 28 0 chr5 48103236 48103489 -154982043 - MER31-int LTR ERV1 -808 4128 3869 698 202 0 0 chr5 48103636 48103755 -154981777 - AluJb SINE Alu -192 120 2 1772 151 16 7 chr5 48103828 48104133 -154981399 - AluSx SINE Alu -4 308 1 192 319 79 49 chr5 48104190 48104456 -154981076 + L2 LINE L2 3035 3308 -5 1618 189 13 0 chr5 48104473 48104780 -154980752 + AluJo SINE Alu 1 311 -1 5637 155 40 22 chr5 48104780 48105575 -154979957 - MER4-int LTR ERV1 -1479 5119 4294 1438 157 45 11 chr5 48105575 48105861 -154979671 + AluSx SINE Alu 1 296 -16 5637 155 40 22 chr5 48105861 48106192 -154979340 - MER4-int LTR ERV1 -2304 4294 3970 234 291 196 20 chr5 48106848 48106915 -154978617 - MER69A DNA AcHobo -2352 174 120 2123 118 3 0 chr5 48106915 48107219 -154978313 + AluSx SINE Alu 1 305 -7 234 291 196 20 chr5 48107219 48107299 -154978233 - MER69A DNA AcHobo -2406 120 1 750 248 71 50 chr5 48107773 48108095 -154977437 + L1M4 LINE L1 3703 4031 -2115 1566 159 222 17 chr5 48108099 48108557 -154976975 + LTR49 LTR ERV1 165 593 -2 2041 165 24 13 chr5 48108561 48108937 -154976595 + LTR49-int LTR ERV1 1 380 -5951 1925 125 0 0 chr5 48108937 48109217 -154976315 - AluSx SINE Alu -17 295 16 1349 169 97 18 chr5 48109219 48109497 -154976035 - AluJo SINE Alu -12 300 1 280 183 21 151 chr5 48109499 48109592 -154975940 - MER34C LTR ERV1 -492 93 13 1270 120 4 52 chr5 48110105 48110228 -154975304 + AluSg/x SINE Alu 67 177 -135 6492 181 52 12 chr5 48110228 48111258 -154974274 + MER11C LTR ERVK 1 1071 0 1270 120 4 52 chr5 48111258 48111388 -154974144 + AluSg/x SINE Alu 177 312 0 265 261 22 65 chr5 48111474 48111612 -154973920 + MER104 DNA Tc2 5 136 -44 1483 175 3 26 chr5 48111655 48111963 -154973569 - AluJo SINE Alu -8 304 4 743 171 0 0 chr5 48112399 48112528 -154973004 - AluJo SINE Alu -75 237 109 1457 157 33 30 chr5 48113364 48113669 -154971863 + AluJo SINE Alu 7 312 0 313 275 151 2 chr5 48113670 48113824 -154971708 + L1MCa LINE L1 1140 2108 -1185 1795 108 29 4 chr5 48113922 48114199 -154971333 - AluSx SINE Alu -14 298 15 23 0 0 0 chr5 48115969 48115992 -154969540 + AT_rich Low_complexity Low_complexity 1 23 0 381 132 9 123 chr5 48117243 48117349 -154968183 + L1MC4 LINE L1 7752 7845 -197 1735 127 12 0 chr5 48117398 48117657 -154967875 - AluSx SINE Alu -39 273 12 1618 119 50 53 chr5 48117719 48118021 -154967511 + AluSq SINE Alu 5 305 -8 527 270 125 85 chr5 48118422 48118654 -154966878 - LTR33 LTR ERVL -19 502 281 1464 205 0 7 chr5 48118654 48118823 -154966709 - AluJo SINE Alu -7 305 136 287 43 0 43 chr5 48118823 48118869 -154966663 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 1973 101 29 4 chr5 48118869 48119145 -154966387 - AluSq SINE Alu -30 283 1 1464 205 0 7 chr5 48119145 48119271 -154966261 - AluJo SINE Alu -174 138 11 527 270 125 85 chr5 48119271 48119519 -154966013 - LTR33 LTR ERVL -240 281 3 1900 141 3 3 chr5 48119556 48119854 -154965678 - AluSx SINE Alu -14 298 1 2225 269 37 33 chr5 48119954 48120268 -154965264 + L1M4 LINE L1 3473 3784 -2362 2268 72 0 23 chr5 48120268 48120574 -154964958 + AluY SINE Alu 1 299 -12 2225 269 37 33 chr5 48120574 48121087 -154964445 + L1M4 LINE L1 3784 4304 -1842 2047 103 10 0 chr5 48121407 48121709 -154963823 - AluSq SINE Alu -8 305 1 1337 170 73 28 chr5 48123102 48123390 -154962142 - L1PA16 LINE L1 -7 6159 5859 721 183 77 48 chr5 48123436 48123644 -154961888 - AluJb SINE Alu -16 296 83 2008 110 0 35 chr5 48123686 48124003 -154961529 - AluY SINE Alu -5 306 1 1870 134 24 0 chr5 48124469 48124761 -154960771 + AluSq SINE Alu 1 299 -14 1739 164 0 43 chr5 48125025 48125348 -154960184 + AluJb SINE Alu 1 309 -3 214 355 52 26 chr5 48125365 48125596 -154959936 + MIR SINE MIR 9 245 -17 185 389 0 0 chr5 48125841 48125913 -154959619 - L2 LINE L2 -7 3265 3194 1978 150 3 10 chr5 48126885 48127192 -154958340 + AluSq SINE Alu 3 307 -6 323 203 31 0 chr5 48127207 48127271 -154958261 - MER75 DNA T2_type -448 66 1 1462 194 0 52 chr5 48127687 48127997 -154957535 - AluJo SINE Alu -17 295 2 1413 129 0 14 chr5 48128056 48128265 -154957267 - AluSg/x SINE Alu -14 298 93 3053 68 63 0 chr5 48128265 48128662 -154956870 - MER11D LTR ERVK 0 897 476 7443 44 24 0 chr5 48128662 48129659 -154955873 - L1PA4 LINE L1 -5 6150 5147 914 138 14 7 chr5 48129773 48129918 -154955614 + AluSc SINE Alu 152 297 -12 1746 194 3 0 chr5 48130139 48130443 -154955089 + AluJo SINE Alu 1 305 -7 5377 168 47 31 chr5 48130451 48131258 -154954274 - MER4B-int LTR ERV1 -1489 5109 4316 1672 197 0 0 chr5 48131258 48131537 -154953995 + AluJb SINE Alu 1 279 -33 369 0 0 0 chr5 48131537 48131578 -154953954 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 5377 168 47 31 chr5 48131578 48131979 -154953553 - MER4B-int LTR ERV1 -2281 4317 3881 444 126 13 86 chr5 48131975 48132126 -154953406 - MER4B-int LTR ERV1 -4757 2001 1862 * 1669 129 35 0 chr5 48132139 48132394 -154953138 - AluSx SINE Alu -18 294 31 31 58 0 0 chr5 48133607 48133659 -154951873 + AT_rich Low_complexity Low_complexity 1 52 0 184 67 0 67 chr5 48133867 48133912 -154951620 + (CAAAAA)n Simple_repeat Simple_repeat 6 47 0 2063 89 18 32 chr5 48134294 48134575 -154950957 + AluSq SINE Alu 37 313 0 2153 119 7 0 chr5 48134824 48135134 -154950398 + AluSx SINE Alu 1 312 0 21 0 0 0 chr5 48135358 48135379 -154950153 + GC_rich Low_complexity Low_complexity 1 21 0 2365 81 3 0 chr5 48137464 48137761 -154947771 - AluSc SINE Alu -11 298 1 225 0 0 0 chr5 48138812 48138837 -154946695 + (T)n Simple_repeat Simple_repeat 1 25 0 30 59 0 0 chr5 48139014 48139065 -154946467 + AT_rich Low_complexity Low_complexity 1 51 0 3915 114 34 16 chr5 48139217 48139841 -154945691 - L1PA13 LINE L1 -3 6160 5526 2031 128 0 4 chr5 48140141 48140445 -154945087 + AluSg SINE Alu 2 304 0 380 266 46 28 chr5 48140859 48140968 -154944564 - MLT1A2 LTR MaLR -90 284 174 198 209 0 0 chr5 48140969 48141012 -154944520 + GA-rich Low_complexity Low_complexity 2 44 0 658 176 61 34 chr5 48141046 48141194 -154944338 - MLT1A2 LTR MaLR -222 152 1 222 37 0 0 chr5 48141326 48141353 -154944179 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 6674 168 12 34 chr5 48141379 48142666 -154942866 - LTR57-int LTR ERVL -3512 1831 573 2477 57 0 10 chr5 48142666 48142967 -154942565 + AluY SINE Alu 1 298 -13 643 242 0 8 chr5 48143091 48143219 -154942313 + LTR57-int LTR ERVL 8 134 -5209 462 349 18 22 chr5 48143235 48143507 -154942025 + L1ME LINE L1 5463 5733 -429 * 578 154 31 33 chr5 48143469 48143635 -154941897 - L1M4 LINE L1 -680 5494 5335 2144 203 80 2 chr5 48143653 48144091 -154941441 + MER70A LTR ERVL 1 472 0 1665 98 18 4 chr5 48144193 48144418 -154941114 - AluSg/x SINE Alu -17 295 68 274 32 0 0 chr5 48144418 48144449 -154941083 + AluY SINE Alu 14 44 -259 237 159 0 0 chr5 48146002 48146046 -154939486 + CT-rich Low_complexity Low_complexity 2 45 0 411 21 0 0 chr5 48146471 48146519 -154939013 + (CA)n Simple_repeat Simple_repeat 2 49 0 2362 157 47 93 chr5 48147177 48147687 -154937845 - MER4B LTR ERV1 -11 768 236 2295 53 42 3 chr5 48147687 48147971 -154937561 - AluY SINE Alu -16 295 1 1932 134 4 0 chr5 48147971 48148247 -154937285 - AluSx SINE Alu -29 283 7 2362 157 47 93 chr5 48148247 48148367 -154937165 - MER4B LTR ERV1 -541 238 1 2108 125 7 3 chr5 48148516 48148820 -154936712 + AluSp SINE Alu 1 305 -8 1260 220 14 4 chr5 48150120 48150397 -154935135 - AluJb SINE Alu -28 284 5 180 245 0 0 chr5 48150604 48150657 -154934875 + CT-rich Low_complexity Low_complexity 3 55 0 201 162 0 0 chr5 48151232 48151269 -154934263 + A-rich Low_complexity Low_complexity 1 37 0 394 152 5 0 chr5 48151681 48151753 -154933779 - AluJ/FLAM SINE Alu -244 58 1 221 294 91 57 chr5 48151760 48152025 -154933507 - L2 LINE L2 -5 3308 3035 414 203 0 0 chr5 48152075 48152149 -154933383 + AluJ/FLAM SINE Alu 1 74 -238 4124 56 2 0 chr5 48152159 48152644 -154932888 + MER11D LTR ERVK 1 486 -411 40104 71 5 24 chr5 48152646 48157927 -154927605 + L1P LINE L1 1 5383 -763 2100 103 17 10 chr5 48157927 48158228 -154927304 + AluSg SINE Alu 1 303 -7 40104 71 5 24 chr5 48158228 48158304 -154927228 + L1P LINE L1 5377 5254 -887 7448 38 7 0 chr5 48158304 48159193 -154926339 + L1PA4 LINE L1 5254 6148 -7 540 256 88 47 chr5 48160755 48161095 -154924437 + L1M4 LINE L1 3705 4058 -2088 290 206 0 43 chr5 48162347 48162439 -154923093 - AluY SINE Alu 0 301 214 1647 179 30 27 chr5 48162577 48162913 -154922619 - MER1B DNA MER1_type 0 337 1 29 60 0 0 chr5 48163725 48163775 -154921757 + AT_rich Low_complexity Low_complexity 1 50 0 3880 136 11 0 chr5 48163933 48164558 -154920974 - L1PA13 LINE L1 -6 6157 5526 397 277 9 9 chr5 48165237 48165349 -154920183 - MLT1A2 LTR MaLR -90 284 173 216 264 0 0 chr5 48165349 48165402 -154920130 + GA-rich Low_complexity Low_complexity 2 54 0 770 139 44 44 chr5 48165420 48165578 -154919954 - MLT1A2 LTR MaLR -216 158 1 21 0 0 0 chr5 48165744 48165765 -154919767 + AT_rich Low_complexity Low_complexity 1 21 0 204 191 63 0 chr5 48165818 48165881 -154919651 + (TTAA)n Simple_repeat Simple_repeat 3 69 0 6988 161 29 25 chr5 48165907 48166229 -154919303 - LTR57-int LTR ERVL -3512 1831 1512 2525 59 0 3 chr5 48166229 48166534 -154918998 + AluY SINE Alu 1 304 -7 6988 161 29 25 chr5 48166534 48167500 -154918032 - LTR57-int LTR ERVL -3831 1512 538 640 227 23 8 chr5 48167570 48167702 -154917830 + LTR57-int LTR ERVL 1 134 -5209 612 295 46 69 chr5 48167718 48168199 -154917333 + L1ME3 LINE L1 5463 5932 -230 23 0 0 0 chr5 48168903 48168926 -154916606 + AT_rich Low_complexity Low_complexity 1 23 0 1505 122 14 34 chr5 48169092 48169386 -154916146 + AluY SINE Alu 17 304 -7 1637 74 0 5 chr5 48169386 48169588 -154915944 - AluSq SINE Alu -112 201 1 609 201 23 114 chr5 48169628 48169847 -154915685 - L1PA16 LINE L1 -5 6161 5963 1149 148 17 0 chr5 48169848 48170024 -154915508 - AluSx SINE Alu -9 303 125 527 55 95 18 chr5 48170024 48170299 -154915233 + (TA)n Simple_repeat Simple_repeat 1 296 0 926 86 0 72 chr5 48170299 48170438 -154915094 - AluSx SINE Alu -184 129 1 537 165 97 0 chr5 48170439 48170542 -154914990 - L1PA16 LINE L1 -195 5971 5859 300 181 12 84 chr5 48170540 48170623 -154914909 - L1 LINE L1 -1396 4750 4674 * 1046 171 45 36 chr5 48170633 48170855 -154914677 - AluJb SINE Alu -6 306 83 1490 196 56 3 chr5 48171610 48171896 -154913636 + AluJb SINE Alu 1 301 -11 2282 106 3 0 chr5 48171902 48172205 -154913327 + AluSp SINE Alu 1 304 -9 2642 43 0 0 chr5 48173156 48173456 -154912076 - AluY SINE Alu -11 300 1 427 194 0 0 chr5 48173789 48173861 -154911671 - MER75 DNA T2_type -442 72 1 1577 206 0 29 chr5 48174310 48174616 -154910916 - AluJo SINE Alu -15 297 1 2007 146 0 10 chr5 48174681 48174983 -154910549 - AluSx SINE Alu -13 299 1 1567 199 7 0 chr5 48175337 48175618 -154909914 + AluJo SINE Alu 5 287 -25 5508 159 42 51 chr5 48175655 48176114 -154909418 - MER4B-int LTR ERV1 -1489 5109 4647 8946 38 20 1 chr5 48176114 48177165 -154908367 - MER11C LTR ERVK 0 1071 1 5508 159 42 51 chr5 48177165 48177509 -154908023 - MER4B-int LTR ERV1 -1951 4647 4301 1780 189 0 0 chr5 48177509 48177806 -154907726 + AluJb SINE Alu 1 297 -15 5508 159 42 51 chr5 48177806 48178160 -154907372 - MER4B-int LTR ERV1 -2297 4301 3945 1829 123 4 4 chr5 48178160 48178429 -154907103 - AluSg SINE Alu 0 310 42 5508 159 42 51 chr5 48178429 48178862 -154906670 - MER4B-int LTR ERV1 -2653 3945 3509 2277 98 0 0 chr5 48178862 48179149 -154906383 + AluSc SINE Alu 1 287 -22 180 0 0 0 chr5 48179156 48179176 -154906356 + (TAA)n Simple_repeat Simple_repeat 2 21 0 5508 159 42 51 chr5 48179176 48179391 -154906141 - MER4B-int LTR ERV1 -3095 3503 3305 2341 89 7 0 chr5 48179391 48179684 -154905848 - AluY SINE Alu -16 295 1 868 146 46 0 chr5 48179684 48179814 -154905718 - AluSq/x SINE Alu -176 136 1 2707 145 18 71 chr5 48179820 48180125 -154905407 - MER4B-int LTR ERV1 -4113 2485 2165 2824 145 142 42 chr5 48180125 48180786 -154904746 + LTR8A LTR ERV1 1 727 0 2707 145 18 71 chr5 48180786 48181228 -154904304 - MER4B-int LTR ERV1 -4433 2165 970 26 64 0 0 chr5 48182492 48182539 -154902993 + AT_rich Low_complexity Low_complexity 1 47 0 206 79 0 26 chr5 48182752 48182790 -154902742 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 2728 29 0 3 chr5 48183102 48183412 -154902120 - AluY SINE Alu -2 309 1 182 88 0 29 chr5 48186530 48186564 -154898968 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 196 151 19 19 chr5 48187159 48187212 -154898320 + GA-rich Low_complexity Low_complexity 3 55 0 296 24 0 24 chr5 48187255 48187297 -154898235 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1448 191 7 7 chr5 48187451 48187728 -154897804 + AluJb SINE Alu 5 281 -31 2637 59 0 0 chr5 48188312 48188615 -154896917 + AluY SINE Alu 1 303 -8 1992 103 41 0 chr5 48189017 48189288 -154896244 + AluSq SINE Alu 24 305 -8 2284 75 0 3 chr5 48189288 48189570 -154895962 + AluY SINE Alu 1 281 -30 2659 161 66 23 chr5 48190032 48190611 -154894921 + MER4B LTR ERV1 1 768 -11 372 22 0 0 chr5 48191275 48191320 -154894212 + (TG)n Simple_repeat Simple_repeat 2 46 0 396 291 33 46 chr5 48192006 48192157 -154893375 - LTR33 LTR ERVL -356 165 17 939 156 134 6 chr5 48192260 48192439 -154893093 - AluSq SINE Alu -45 268 67 29 60 0 0 chr5 48193018 48193068 -154892464 + AT_rich Low_complexity Low_complexity 1 50 0 2058 104 17 0 chr5 48193330 48193617 -154891915 + AluSx SINE Alu 1 292 -20 1688 163 119 18 chr5 48193962 48194373 -154891159 - MER61D LTR ERV1 0 501 1 2144 77 22 0 chr5 48194868 48195162 -154890370 + AluSc SINE Alu 1 300 0 615 265 41 6 chr5 48195884 48196054 -154889478 + MER90 LTR ERV1 439 614 0 2250 69 0 14 chr5 48196158 48196449 -154889083 + AluY SINE Alu 1 287 -24 207 0 0 0 chr5 48196460 48196483 -154889049 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1110 143 0 24 chr5 48196483 48196651 -154888881 + AluSg/x SINE Alu 125 288 -22 2758 162 49 4 chr5 48197790 48198296 -154887236 - L1MB3 LINE L1 -192 5991 5463 2290 107 0 0 chr5 48198416 48198707 -154886825 - AluSq SINE Alu -22 291 1 218 57 57 0 chr5 48198800 48198835 -154886697 + CT-rich Low_complexity Low_complexity 4 40 0 1658 172 47 14 chr5 48198838 48199134 -154886398 - AluJo SINE Alu -6 306 1 1735 187 0 13 chr5 48199407 48199707 -154885825 - AluSx SINE Alu -16 296 1 2262 292 50 17 chr5 48199737 48200658 -154884874 + L1M4 LINE L1 3356 4306 -1840 216 0 0 0 chr5 48201087 48201111 -154884421 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1371 184 75 18 chr5 48202220 48202498 -154883034 - L1PA16 LINE L1 -14 6152 5859 189 0 0 0 chr5 48202543 48202564 -154882968 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 907 177 79 129 chr5 48202595 48202912 -154882620 - AluJb SINE Alu 0 302 2 622 231 0 15 chr5 48202918 48203052 -154882480 - FLAM_C SINE Alu -1 132 1 1810 188 10 0 chr5 48203120 48203429 -154882103 - AluSx SINE Alu 0 312 1 744 97 16 32 chr5 48203568 48203692 -154881840 + AluSp SINE Alu 2 123 -190 189 154 0 0 chr5 48203857 48203896 -154881636 + A-rich Low_complexity Low_complexity 1 39 0 1172 216 5 67 chr5 48203970 48204359 -154881173 + MER41B LTR ERV1 224 588 -47 302 193 45 91 chr5 48204327 48204415 -154881117 + MER66B LTR ERV1 403 486 0 * 303 185 0 15 chr5 48205247 48205312 -154880220 - AluJ/FRAM SINE Alu -6 296 233 1496 166 60 42 chr5 48205467 48205798 -154879734 + MER1B DNA MER1_type 1 337 0 1015 153 21 168 chr5 48207333 48207666 -154877866 - MLT1A2 LTR MaLR -90 284 1 1171 129 10 35 chr5 48208217 48208418 -154877114 - MSTC LTR MaLR -232 196 1 261 65 87 0 chr5 48209126 48209172 -154876360 - L1MB4 LINE L1 -1 6179 6130 1521 217 59 30 chr5 48209492 48209951 -154875581 - MER41B LTR ERV1 0 585 109 2115 115 10 0 chr5 48210243 48210538 -154874994 - AluSq SINE Alu -15 298 1 207 88 0 0 chr5 48210939 48210973 -154874559 + (TG)n Simple_repeat Simple_repeat 2 35 0 2148 107 4 0 chr5 48210973 48211254 -154874278 - AluSg SINE Alu -28 282 1 210 270 27 14 chr5 48211598 48211672 -154873860 - MIR SINE MIR -141 121 47 1296 66 38 89 chr5 48211748 48211961 -154873571 + AluY SINE Alu 108 309 -2 2164 96 38 0 chr5 48212018 48212311 -154873221 - AluSp SINE Alu -8 305 2 568 274 53 41 chr5 48214465 48214783 -154870749 + L1M4 LINE L1 3737 4058 -2088 405 198 0 0 chr5 48216043 48216124 -154869408 - AluJ/FRAM SINE Alu 0 312 232 1921 166 9 21 chr5 48216281 48216618 -154868914 - MER1B DNA MER1_type -6 333 1 23 78 0 0 chr5 48217430 48217481 -154868051 + AT_rich Low_complexity Low_complexity 1 51 0 1290 159 19 24 chr5 48217682 48217762 -154867770 - L1PA13 LINE L1 -21 6142 6063 2317 127 31 3 chr5 48217762 48218116 -154867416 - THE1B LTR MaLR 0 364 1 1290 159 19 24 chr5 48218116 48218287 -154867245 - L1PA13 LINE L1 -100 6063 5888 680 219 15 0 chr5 48219409 48219546 -154865986 + L1M3 LINE L1 5569 5707 -476 2430 43 11 0 chr5 48219546 48219852 -154865680 - AluY SINE Alu 0 309 1 450 318 71 24 chr5 48221065 48221402 -154864130 - L1M4 LINE L1 -2090 4056 3704 1572 114 9 0 chr5 48222875 48223085 -154862447 + AluSg/x SINE Alu 97 308 -2 198 0 0 0 chr5 48223106 48223128 -154862404 + (CAA)n Simple_repeat Simple_repeat 3 24 0 347 157 83 66 chr5 48223147 48223268 -154862264 + L2 LINE L2 1897 2019 -1295 757 250 57 20 chr5 48223351 48223675 -154861857 + L1MC5 LINE L1 6923 7176 -632 345 212 242 35 chr5 48223765 48223963 -154861569 + L1MC5 LINE L1 7276 7514 -447 1494 199 11 28 chr5 48223975 48224261 -154861271 + AluJo SINE Alu 1 281 -31 357 177 0 0 chr5 48224263 48224342 -154861190 + (TA)n Simple_repeat Simple_repeat 1 79 0 1345 154 202 4 chr5 48225516 48225769 -154859763 + AluSx SINE Alu 2 304 -8 572 325 33 10 chr5 48225896 48226198 -154859334 + L2 LINE L2 1785 2093 -1221 2139 205 14 70 chr5 48226382 48226899 -154858633 - LTR64 LTR ERVK -70 488 1 760 208 30 6 chr5 48226899 48227067 -154858465 + MER3 DNA MER1_type 34 205 -4 25 31 0 0 chr5 48227565 48227597 -154857935 + AT_rich Low_complexity Low_complexity 1 32 0 1673 319 166 27 chr5 48228051 48228585 -154856947 - L2 LINE L2 0 3313 2854 1628 184 7 3 chr5 48228585 48228873 -154856659 + AluJo SINE Alu 11 299 -13 1673 319 166 27 chr5 48228873 48229790 -154855742 - L2 LINE L2 -459 2854 1666 3158 123 9 61 chr5 48230351 48230991 -154854541 - MER4B LTR ERV1 0 779 1 2700 219 42 32 chr5 48231068 48232099 -154853433 + L1M4c LINE L1 2053 3099 -3283 190 365 0 0 chr5 48232125 48232188 -154853344 + MER5A DNA MER1_type 87 149 -40 263 241 60 24 chr5 48232334 48232417 -154853115 - MLT1K LTR MaLR -31 557 472 319 281 0 16 chr5 48232735 48232856 -154852676 - L1ME4a LINE L1 -217 5904 5786 645 201 43 18 chr5 48232861 48233025 -154852507 - MLT1F1 LTR MaLR -2 565 398 763 195 13 0 chr5 48233025 48233174 -154852358 + L1MA9 LINE L1 6005 6155 -157 452 314 83 22 chr5 48233222 48233585 -154851947 + LTR16C LTR ERVL 99 483 -8 402 21 0 0 chr5 48235380 48235427 -154850105 + (CA)n Simple_repeat Simple_repeat 2 48 0 426 296 138 5 chr5 48236452 48236655 -154848877 - MIR SINE MIR 0 262 33 381 240 55 65 chr5 48237568 48237768 -154847764 - MIR SINE MIR 0 262 65 345 224 86 43 chr5 48239247 48239363 -154846169 + MIR SINE MIR 81 201 -61 255 284 0 27 chr5 48239407 48239481 -154846051 - L2 LINE L2 -47 3266 3195 263 224 15 104 chr5 48239739 48239873 -154845659 + LTR16A1 LTR ERVL 3 124 -333 282 254 0 0 chr5 48240660 48240770 -154844762 + (TG)n Simple_repeat Simple_repeat 2 111 0 197 174 23 46 chr5 48240924 48240978 -154844554 - MIR SINE MIR -114 94 42 805 284 144 27 chr5 48241114 48241565 -154843967 - LTR33 LTR ERVL -10 511 8 2344 90 0 0 chr5 48242210 48242511 -154843021 - AluY SINE Alu -10 301 1 884 167 70 0 chr5 48243278 48243464 -154842068 + L1PB1 LINE L1 2 200 -6663 10316 90 41 5 chr5 48243466 48245677 -154839855 + L1PB1 LINE L1 636 3056 -3806 36153 74 28 4 chr5 48245684 48251683 -154833849 - L1PA6 LINE L1 0 6154 11 12930 183 10 4 chr5 48251693 48255498 -154830034 + L1PB1 LINE L1 3040 6866 -1 260 279 88 7 chr5 48256758 48256894 -154828638 - L1MEc LINE L1 -5073 1323 1177 298 261 0 11 chr5 48257017 48257105 -154828427 - L1MEc LINE L1 -6271 125 39 966 199 23 23 chr5 48257325 48257541 -154827991 - MER20 DNA MER1_type -3 216 1 429 305 4 49 chr5 48258258 48258503 -154827029 - MIR SINE MIR -27 235 6 506 236 216 0 chr5 48258820 48258968 -154826564 + MER5A DNA MER1_type 10 189 0 216 374 84 23 chr5 48259400 48259531 -154826001 + MIR3 SINE MIR 27 165 -43 524 329 70 20 chr5 48260464 48260807 -154824725 + LTR16C LTR ERVL 99 458 -33 398 245 124 26 chr5 48260854 48261183 -154824349 - L1MEc LINE L1 -3333 2882 2521 302 174 3 31 chr5 48261348 48261434 -154824098 - MER4C LTR ERV1 0 610 383 1458 149 57 19 chr5 48261614 48261930 -154823602 - MER4A LTR ERV1 -336 328 1 22 35 0 0 chr5 48262119 48262148 -154823384 + AT_rich Low_complexity Low_complexity 1 29 0 727 249 6 0 chr5 48262187 48262356 -154823176 + MER58B DNA MER1_type 172 341 0 1541 103 0 0 chr5 48262585 48262780 -154822752 + AluSg/x SINE Alu 106 300 -10 180 0 0 0 chr5 48262976 48262996 -154822536 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 837 174 0 0 chr5 48263273 48263405 -154822127 + FLAM_C SINE Alu 1 132 -1 180 0 0 0 chr5 48263768 48263788 -154821744 + (TTTTA)n Simple_repeat Simple_repeat 5 24 0 256 348 22 11 chr5 48263817 48264001 -154821531 - L1MEc LINE L1 -4813 1583 1398 21 0 0 0 chr5 48264363 48264384 -154821148 + AT_rich Low_complexity Low_complexity 1 21 0 620 205 0 9 chr5 48264384 48264496 -154821036 - FLAM_A SINE Alu -21 121 11 386 226 29 58 chr5 48264602 48264739 -154820793 + MIR SINE MIR 118 250 -12 206 326 82 22 chr5 48264819 48264954 -154820578 + L2 LINE L2 1603 1745 -1569 2030 80 44 7 chr5 48264978 48265253 -154820279 + AluSc SINE Alu 13 297 -12 3949 163 14 9 chr5 48265272 48266008 -154819524 - L1MB3 LINE L1 -1 6182 5444 1236 202 73 37 chr5 48266011 48266698 -154818834 - L1ME LINE L1 -497 5669 4914 2310 67 0 64 chr5 48267184 48267511 -154818021 - AluY SINE Alu -4 307 2 205 57 86 0 chr5 48267874 48267909 -154817623 + A-rich Low_complexity Low_complexity 2 39 0 366 294 5 98 chr5 48267929 48268053 -154817479 + MIR3 SINE MIR 33 136 -72 2286 97 7 0 chr5 48268053 48268351 -154817181 - AluSq SINE Alu -13 300 1 366 294 5 98 chr5 48268351 48268410 -154817122 + MIR3 SINE MIR 136 199 -9 7381 39 2 0 chr5 48268761 48270409 -154815123 + L1PA4 LINE L1 4506 6155 0 622 233 0 9 chr5 48270439 48270555 -154814977 - AluJb SINE Alu -195 117 3 1651 221 73 53 chr5 48271302 48271853 -154813679 + MER68 LTR ERV1 1 562 0 414 229 57 130 chr5 48271933 48272059 -154813473 + MER5B DNA MER1_type 1 110 -68 2249 101 0 19 chr5 48272059 48272366 -154813166 - AluSc SINE Alu -8 301 1 414 229 57 130 chr5 48272366 48272431 -154813101 + MER5B DNA MER1_type 110 178 0 241 54 0 0 chr5 48272738 48272775 -154812757 - L1P LINE L1 -818 5336 5300 1555 32 5 0 chr5 48272775 48272964 -154812568 + L1PA4 LINE L1 5966 6155 0 32 26 0 0 chr5 48272988 48273027 -154812505 + AT_rich Low_complexity Low_complexity 1 39 0 532 247 46 17 chr5 48274677 48274851 -154810681 - MIR SINE MIR 0 262 84 1836 184 34 11 chr5 48275172 48275553 -154809979 - MLT1B LTR MaLR 0 390 1 1449 248 83 19 chr5 48276605 48277073 -154808459 - MLT1F1 LTR MaLR 0 567 70 4691 110 56 72 chr5 48277074 48278527 -154807005 - pTR5 LTR ERV1 0 2606 1524 309 246 0 0 chr5 48278530 48278599 -154806933 - MLT1F1 LTR MaLR -473 69 1 5281 123 30 0 chr5 48278830 48279576 -154805956 - L1PA14 LINE L1 0 6161 5369 6936 68 26 0 chr5 48279576 48280450 -154805082 + MER11D LTR ERVK 1 897 0 5281 123 30 0 chr5 48280450 48281087 -154804445 - L1PA14 LINE L1 -792 5369 4753 639 300 116 4 chr5 48281647 48281880 -154803652 - MIR SINE MIR -2 260 2 600 264 109 49 chr5 48281906 48282122 -154803410 - L2 LINE L2 -3 3310 3071 1944 142 0 0 chr5 48282122 48282424 -154803108 - AluSx SINE Alu 0 302 1 600 264 109 49 chr5 48282424 48282490 -154803042 - L2 LINE L2 -242 3071 3010 447 288 207 27 chr5 48282494 48282716 -154802816 + MIR SINE MIR 1 262 0 510 343 66 26 chr5 48282716 48282981 -154802551 - L2 LINE L2 -268 3004 2731 835 195 151 0 chr5 48282981 48283166 -154802366 - MER20 DNA MER1_type -5 214 2 2008 319 75 14 chr5 48283166 48283978 -154801554 - L2 LINE L2 -605 2709 1848 213 217 0 0 chr5 48284156 48284202 -154801330 + (TAGG)n Simple_repeat Simple_repeat 2 47 0 1332 170 0 0 chr5 48284382 48284600 -154800932 - LOR1a LTR ERV1 0 497 280 357 134 76 199 chr5 48284614 48284694 -154800838 - LOR1a LTR ERV1 -347 150 100 2359 95 3 0 chr5 48284694 48284998 -154800534 + AluSp SINE Alu 1 305 -8 357 134 76 199 chr5 48284998 48285088 -154800444 - LOR1a LTR ERV1 -397 100 1 201 254 84 28 chr5 48285312 48285383 -154800149 + L2 LINE L2 3198 3272 0 3176 74 16 0 chr5 48286211 48286641 -154798891 + L1PA13 LINE L1 5724 6160 -3 235 346 116 14 chr5 48286739 48287076 -154798456 + L2 LINE L2 2651 3079 -193 357 82 0 0 chr5 48288429 48288478 -154797054 + (TG)n Simple_repeat Simple_repeat 2 50 0 649 213 0 8 chr5 48288485 48288607 -154796925 - FLAM_C SINE Alu -12 121 1 377 334 56 35 chr5 48288704 48288720 -154796812 - MLT1J LTR MaLR -30 481 467 3658 132 153 51 chr5 48288720 48289469 -154796063 - LTR1B LTR ERV1 0 826 1 377 334 56 35 chr5 48289469 48289826 -154795706 - MLT1J LTR MaLR -44 467 100 679 240 32 7 chr5 48289934 48290088 -154795444 - MIR SINE MIR -98 164 7 228 241 0 0 chr5 48290154 48290212 -154795320 + (TG)n Simple_repeat Simple_repeat 2 59 0 217 367 19 13 chr5 48290985 48291143 -154794389 + L3 LINE CR1 1353 1511 -66 243 227 0 0 chr5 48291500 48291566 -154793966 + (TA)n Simple_repeat Simple_repeat 1 66 0 554 245 176 34 chr5 48291621 48291825 -154793707 + MIR SINE MIR 30 262 0 230 269 0 0 chr5 48291998 48292050 -154793482 + (CATA)n Simple_repeat Simple_repeat 4 55 0 3909 127 22 9 chr5 48292097 48292742 -154792790 - MER39B LTR ERV1 0 653 1 23 0 0 0 chr5 48292907 48292930 -154792602 + AT_rich Low_complexity Low_complexity 1 23 0 737 76 29 0 chr5 48293197 48293302 -154792230 - MER30B DNA MER1_type -82 108 1 338 316 36 65 chr5 48293514 48293653 -154791879 + L2 LINE L2 3122 3256 -16 2117 122 10 0 chr5 48293785 48294089 -154791443 - AluSq SINE Alu -6 307 1 305 197 0 0 chr5 48294108 48294169 -154791363 - Alu SINE Alu -7 295 235 1581 174 34 34 chr5 48294218 48294546 -154790986 + MER61C LTR ERV1 104 431 -3 548 214 31 0 chr5 48294547 48294645 -154790887 - FRAM SINE Alu -72 104 4 3909 64 8 0 chr5 48294909 48295395 -154790137 - LTR2B LTR ERV1 0 490 1 23428 109 7 8 chr5 48295395 48298941 -154786591 - Harlequin LTR ERV1 0 6896 3352 6358 64 16 20 chr5 48298940 48299947 -154785585 - Harlequin LTR ERV1 -4322 2574 1572 * 4374 77 12 22 chr5 48299932 48300580 -154784952 - Harlequin LTR ERV1 -5993 903 262 * 768 102 8 0 chr5 48300575 48300693 -154784839 - Harlequin LTR ERV1 -6516 380 262 * 2413 107 8 16 chr5 48300688 48301071 -154784461 - Harlequin LTR ERV1 -6516 380 1 3763 59 34 0 chr5 48301071 48301545 -154783987 - LTR2B LTR ERV1 0 490 1 2225 92 0 0 chr5 48303963 48304279 -154781253 + AluSg SINE Alu 1 316 0 430 294 83 52 chr5 48304493 48304745 -154780787 + MIR SINE MIR 2 261 -1 27 29 0 0 chr5 48304825 48304859 -154780673 + AT_rich Low_complexity Low_complexity 1 34 0 2371 74 0 37 chr5 48305771 48306094 -154779438 - AluY SINE Alu 0 311 1 299 213 154 15 chr5 48306710 48306846 -154778686 + L1ME4a LINE L1 5963 6117 -4 23 33 0 0 chr5 48306955 48306985 -154778547 + AT_rich Low_complexity Low_complexity 1 30 0 1468 147 60 23 chr5 48307028 48307327 -154778205 + MER2 DNA MER2_type 1 310 -35 364 302 83 79 chr5 48307905 48308398 -154777134 + L2 LINE L2 1898 2392 -922 24 32 0 0 chr5 48309038 48309069 -154776463 + AT_rich Low_complexity Low_complexity 1 31 0 2394 49 0 0 chr5 48310255 48310541 -154774991 - AluY SINE Alu -25 286 1 21 36 0 0 chr5 48310960 48310988 -154774544 + AT_rich Low_complexity Low_complexity 1 28 0 209 215 123 0 chr5 48311259 48311324 -154774208 - MIR SINE MIR -74 188 116 439 254 16 60 chr5 48311601 48311786 -154773746 - MER104 DNA MER2_type -3 177 1 2237 115 0 0 chr5 48311813 48312117 -154773415 + AluSc SINE Alu 1 304 -5 1943 163 0 0 chr5 48312780 48313087 -154772445 - AluJb SINE Alu -5 307 1 286 227 135 123 chr5 48315536 48315699 -154769833 - MER5B DNA MER1_type -9 169 5 210 37 0 0 chr5 48316250 48316277 -154769255 + (CAG)n Simple_repeat Simple_repeat 3 29 0 1897 101 11 18 chr5 48316582 48316858 -154768674 - AluSq SINE Alu -39 274 1 239 311 30 24 chr5 48317200 48317364 -154768168 + L1MEd LINE L1 926 1090 -5029 266 204 35 97 chr5 48317366 48317479 -154768053 - MLT2F LTR ERVL -93 570 465 25 75 0 0 chr5 48317898 48317951 -154767581 + AT_rich Low_complexity Low_complexity 1 53 0 186 344 16 0 chr5 48318058 48318119 -154767413 + L2 LINE L2 3250 3311 -2 4711 20 0 2 chr5 48318472 48319016 -154766516 - L1PA3 LINE L1 -3 6152 5610 1154 279 78 26 chr5 48319046 48319957 -154765575 - L1MEc LINE L1 -3355 3586 2678 616 293 51 5 chr5 48319968 48320183 -154765349 + MLT2F LTR ERVL 3 227 -436 492 347 108 11 chr5 48320234 48320586 -154764946 + MLT2F LTR ERVL 189 574 -89 279 304 29 6 chr5 48320623 48320794 -154764738 - L1MEc LINE L1 -5087 1857 1683 2163 130 0 0 chr5 48320815 48321116 -154764416 + AluSx SINE Alu 1 301 -11 229 237 0 13 chr5 48321133 48321209 -154764323 - L1MEc LINE L1 -4955 1468 1394 2084 222 55 6 chr5 48321278 48321804 -154763728 - L1ME1 LINE L1 -5 6161 5610 511 301 62 0 chr5 48321810 48321986 -154763546 + LTR16B LTR ERVL 1 187 -277 241 217 0 0 chr5 48321988 48322034 -154763498 + LTR16B LTR ERVL 419 464 0 2947 323 53 21 chr5 48322084 48323496 -154762036 + HERV16 LTR ERVL 78 1534 -3462 446 324 0 7 chr5 48323532 48323677 -154761855 + HERV16 LTR ERVL 1665 1808 -3188 297 224 0 0 chr5 48323791 48323849 -154761683 + LTR16B LTR ERVL 1 58 -406 751 281 63 28 chr5 48323996 48324281 -154761251 + LTR16B LTR ERVL 170 464 0 860 193 92 9 chr5 48324286 48324504 -154761028 - L1ME1 LINE L1 -572 5594 5359 633 90 0 11 chr5 48324508 48324597 -154760935 - AluS SINE Alu -225 88 1 1151 238 66 3 chr5 48324600 48324979 -154760553 - L1ME1 LINE L1 -776 5370 4968 32 43 0 0 chr5 48325118 48325164 -154760368 + AT_rich Low_complexity Low_complexity 1 46 0 684 157 0 0 chr5 48325288 48325390 -154760142 + AluS SINE Alu 1 102 -211 337 434 50 26 chr5 48325390 48325890 -154759642 + L1M2 LINE L1 20 531 -6318 746 230 89 4 chr5 48325953 48326223 -154759309 + L1M4 LINE L1 5078 5370 -776 582 151 0 0 chr5 48326228 48326314 -154759218 + AluS SINE Alu 3 88 -225 718 201 6 52 chr5 48326314 48326488 -154759044 - L1PA15-16 LINE L1 -4307 2542 2377 * 1843 215 33 79 chr5 48326485 48327308 -154758224 + L1PA15-16 LINE L1 1777 2563 -3583 1066 194 7 21 chr5 48327302 48327591 -154757941 + L1PA16 LINE L1 1856 2140 -4709 * 9851 215 19 32 chr5 48327561 48328511 -154757021 + L1PA16 LINE L1 3276 4236 -2633 189 0 0 0 chr5 48328511 48328532 -154757000 + (CAA)n Simple_repeat Simple_repeat 1 21 0 9851 215 19 32 chr5 48328532 48331208 -154754324 + L1PA16 LINE L1 4236 6853 -16 35 0 0 0 chr5 48331340 48331375 -154754157 + AT_rich Low_complexity Low_complexity 1 35 0 33 56 0 0 chr5 48331584 48331638 -154753894 + AT_rich Low_complexity Low_complexity 1 54 0 2396 58 0 14 chr5 48331638 48331933 -154753599 + AluY SINE Alu 1 291 -20 1566 119 16 129 chr5 48331939 48332325 -154753207 - L1MA8 LINE L1 -5 6286 5945 357 24 0 0 chr5 48333215 48333257 -154752275 + (TG)n Simple_repeat Simple_repeat 1 42 0 474 371 78 47 chr5 48335435 48336252 -154749280 - L2 LINE L2 0 3272 2428 186 255 143 20 chr5 48336788 48336886 -154748646 - L2 LINE L2 -590 2724 2615 3780 185 64 28 chr5 48337214 48337316 -154748216 - L1MCa LINE L1 -2713 3713 3616 1589 116 4 0 chr5 48337316 48337548 -154747984 - AluSq SINE Alu 0 313 81 3780 185 64 28 chr5 48337548 48340828 -154744704 - L1MCa LINE L1 -2810 3616 29 399 249 168 0 chr5 48340837 48341010 -154744522 - Charlie7 DNA MER1_type -642 1970 1769 1231 267 79 35 chr5 48341011 48341528 -154744004 - Charlie7 DNA MER1_type -2038 574 35 1644 87 0 18 chr5 48342143 48342362 -154743170 - AluSc SINE Alu -10 299 85 230 32 0 0 chr5 48342364 48342395 -154743137 - AluSc SINE Alu -102 31 1 4562 203 28 40 chr5 48342420 48343654 -154741878 - L1 LINE L1 -2059 4087 2869 2942 182 81 22 chr5 48343657 48344348 -154741184 + L1 LINE L1 4094 4825 -1321 201 314 0 0 chr5 48344554 48344605 -154740927 - L3 LINE CR1 -24 1553 1503 22 35 0 0 chr5 48345218 48345247 -154740285 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr5 48345282 48345308 -154740224 + AT_rich Low_complexity Low_complexity 1 26 0 979 169 0 7 chr5 48345308 48345462 -154740070 + FRAM SINE Alu 1 152 -24 23 68 0 0 chr5 48345462 48345506 -154740026 + AT_rich Low_complexity Low_complexity 1 44 0 1764 112 8 4 chr5 48345550 48345799 -154739733 - AluSx SINE Alu -16 296 47 367 317 17 8 chr5 48346438 48346558 -154738974 + L2 LINE L2 3187 3307 -6 226 374 10 0 chr5 48346924 48347023 -154738509 - L2 LINE L2 -7 3265 3166 189 0 0 0 chr5 48347283 48347304 -154738228 + (TTG)n Simple_repeat Simple_repeat 1 21 0 197 308 13 13 chr5 48347456 48347534 -154737998 + MIR SINE MIR 148 225 -37 10413 127 10 3 chr5 48347803 48350529 -154735003 - L1MA1 LINE L1 -3 6299 3553 1536 96 0 0 chr5 48350535 48350733 -154734799 - AluSg SINE Alu -110 200 3 976 109 97 11 chr5 48350739 48350914 -154734618 + L1MC2 LINE L1 6149 6338 -6 3703 178 72 41 chr5 48351086 48351919 -154733613 - L1MC3 LINE L1 -290 7495 6637 258 302 32 79 chr5 48352068 48352194 -154733338 + MIR SINE MIR 79 198 -64 1932 133 38 22 chr5 48352549 48352925 -154732607 + Tigger3(Golem) DNA MER2_type 1 3028 -1 444 234 34 63 chr5 48353129 48353226 -154732306 - L1MC3 LINE L1 -1889 5919 5828 2100 126 3 3 chr5 48353226 48353528 -154732004 - AluSx SINE Alu -10 302 1 444 234 34 63 chr5 48353528 48353605 -154731927 - L1MC3 LINE L1 -1980 5828 5750 657 225 28 60 chr5 48353683 48353932 -154731600 - L1MC5 LINE L1 -77 7884 7644 207 102 20 82 chr5 48354167 48354216 -154731316 + (GAAAA)n Simple_repeat Simple_repeat 1 46 0 2505 59 0 0 chr5 48354533 48354836 -154730696 - AluY SINE Alu -8 303 1 2210 180 86 36 chr5 48354860 48355382 -154730150 - MER44D DNA MER2_type -1 604 2 647 258 68 60 chr5 48358398 48358544 -154726988 + MIR SINE MIR 7 157 -105 2180 87 7 7 chr5 48358544 48358843 -154726689 + AluSx SINE Alu 2 300 -12 647 258 68 60 chr5 48358843 48358948 -154726584 + MIR SINE MIR 157 260 -2 180 0 0 0 chr5 48359544 48359564 -154725968 + (TA)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr5 48359563 48359583 -154725949 + (CA)n Simple_repeat Simple_repeat 2 21 0 270 0 0 0 chr5 48359593 48359623 -154725909 + (TATG)n Simple_repeat Simple_repeat 2 31 0 329 266 64 11 chr5 48359816 48359910 -154725622 - L1MC4 LINE L1 -1328 6714 6616 644 181 9 0 chr5 48360225 48360341 -154725191 + L1PA16 LINE L1 6046 6162 -4 22 0 0 0 chr5 48360370 48360392 -154725140 + AT_rich Low_complexity Low_complexity 1 22 0 516 263 163 0 chr5 48361473 48361633 -154723899 + MER5A DNA MER1_type 4 189 0 390 308 127 11 chr5 48361706 48361982 -154723550 - L2 LINE L2 0 3313 3006 2075 120 0 27 chr5 48362066 48362367 -154723165 + AluSx SINE Alu 1 293 -19 404 277 20 0 chr5 48363194 48363295 -154722237 + MIR SINE MIR 47 149 -113 1452 282 56 41 chr5 48363405 48363758 -154721774 - MLT1H LTR MaLR 0 549 184 3517 141 15 0 chr5 48363758 48364277 -154721255 - MER1A DNA MER1_type 0 527 1 1452 282 56 41 chr5 48364277 48364462 -154721070 - MLT1H LTR MaLR -365 184 3 3328 62 14 2 chr5 48364773 48365207 -154720325 + L1PA7 LINE L1 5715 6153 -1 264 100 0 0 chr5 48366166 48366206 -154719326 + (TG)n Simple_repeat Simple_repeat 2 41 0 24 67 0 0 chr5 48368033 48368078 -154717454 + AT_rich Low_complexity Low_complexity 1 45 0 686 193 88 58 chr5 48368560 48368678 -154716854 - MER45A DNA AcHobo -1405 176 50 1749 173 33 44 chr5 48368678 48369043 -154716489 + MLT1A1 LTR MaLR 5 365 0 686 193 88 58 chr5 48369043 48369095 -154716437 - MER45A DNA AcHobo -1531 50 1 27 0 0 0 chr5 48370394 48370421 -154715111 + AT_rich Low_complexity Low_complexity 1 27 0 2295 66 7 0 chr5 48370421 48370724 -154714808 - L1PA5 LINE L1 -3 6151 5847 5568 38 7 1 chr5 48370824 48371979 -154713553 - L1PA5 LINE L1 -287 5867 4706 1513 304 41 4 chr5 48372758 48373271 -154712261 - MLT1H1 LTR MaLR 0 555 24 429 366 100 32 chr5 48373298 48373678 -154711854 - L2 LINE L2 0 3272 2867 1329 163 10 120 chr5 48373684 48374006 -154711526 - MLT2B3 LTR ERVL -223 292 1 211 189 0 0 chr5 48374085 48374122 -154711410 + CT-rich Low_complexity Low_complexity 2 38 0 30 0 0 0 chr5 48374186 48374216 -154711316 + AT_rich Low_complexity Low_complexity 1 30 0 34131 30 13 2 chr5 48374216 48380247 -154705285 - L1PA2 LINE L1 -3 6152 1 372 255 180 70 chr5 48380249 48380449 -154705083 + MIR SINE MIR 41 262 0 1147 168 77 142 chr5 48380596 48381013 -154704519 - MLT1B LTR MaLR 0 390 1 246 324 12 14 chr5 48381028 48381132 -154704400 - L1ME LINE L1 -509 5661 5556 903 247 46 5 chr5 48381161 48381380 -154704152 + LTR16A LTR ERVL 199 426 -24 22 35 0 0 chr5 48381601 48381630 -154703902 + AT_rich Low_complexity Low_complexity 1 29 0 1486 171 74 0 chr5 48383221 48383490 -154702042 - AluJb SINE Alu -23 289 1 377 350 65 48 chr5 48383492 48384078 -154701454 + L1M4 LINE L1 2679 3274 -2872 2412 86 0 0 chr5 48384804 48385105 -154700427 - AluY SINE Alu -10 301 1 354 45 0 0 chr5 48386658 48386702 -154698830 + (GA)n Simple_repeat Simple_repeat 1 44 0 256 175 70 0 chr5 48386840 48386897 -154698635 + MLT1K LTR MaLR 512 572 -16 1688 330 59 31 chr5 48387106 48387901 -154697631 + ERVL LTR ERVL 2902 3718 -2046 190 310 161 0 chr5 48388122 48388209 -154697323 + L2 LINE L2 3197 3297 -16 1092 232 24 4 chr5 48389136 48389386 -154696146 + MIR SINE MIR 3 257 -5 583 261 96 27 chr5 48389450 48389638 -154695894 - MER63A DNA MER1_type 0 210 10 322 317 49 38 chr5 48389861 48390044 -154695488 + MIR SINE MIR 28 212 -50 434 248 98 0 chr5 48390927 48391060 -154694472 + MER103 DNA DNA 21 166 0 238 364 45 40 chr5 48391174 48391372 -154694160 - L2 LINE L2 -184 3088 2890 2201 99 0 10 chr5 48393726 48394028 -154691504 + AluSc SINE Alu 1 299 -10 21 57 0 0 chr5 48396666 48396701 -154688831 + AT_rich Low_complexity Low_complexity 1 35 0 1271 163 63 63 chr5 48397622 48397922 -154687610 - AluJo SINE Alu -12 300 1 301 317 103 78 chr5 48398284 48398357 -154687175 - MIR SINE MIR 0 262 192 1098 219 33 5 chr5 48398357 48398572 -154686960 + MER58A DNA MER1_type 4 224 0 301 317 103 78 chr5 48398572 48398748 -154686784 - MIR SINE MIR -70 192 4 317 301 96 19 chr5 48399052 48399208 -154686324 - Charlie8 DNA MER1_type -2143 274 107 27 29 0 0 chr5 48400159 48400193 -154685339 + AT_rich Low_complexity Low_complexity 1 34 0 478 257 18 9 chr5 48400570 48400683 -154684849 + MER81 DNA DNA 1 114 0 2205 93 21 0 chr5 48400738 48401029 -154684503 + AluSx SINE Alu 1 297 -15 37 23 0 0 chr5 48402050 48402094 -154683438 + AT_rich Low_complexity Low_complexity 1 44 0 214 29 57 0 chr5 48402898 48402933 -154682599 + (TA)n Simple_repeat Simple_repeat 1 37 0 300 268 0 21 chr5 48405343 48405440 -154680092 + L1 LINE L1 4932 5026 -1120 15628 89 27 22 chr5 48407000 48409416 -154676116 - L1P LINE L1 -3254 2892 464 710 193 34 40 chr5 48409524 48409700 -154675832 + L1MDa LINE L1 223 397 -6143 342 262 16 66 chr5 48409693 48409782 -154675750 - L1MDa LINE L1 -6327 213 130 * 1854 89 75 7 chr5 48409782 48410063 -154675469 - AluSg SINE Alu -10 300 1 342 262 16 66 chr5 48410063 48410095 -154675437 - L1MDa LINE L1 -6410 130 98 256 289 197 3 chr5 48410074 48410399 -154675133 - L1MEc LINE L1 -4137 2584 2197 * 2201 108 3 10 chr5 48410663 48410968 -154674564 - AluSg SINE Alu -7 303 1 1187 127 0 0 chr5 48410976 48411142 -154674390 - AluSg/x SINE Alu -17 295 130 1519 87 143 255 chr5 48411142 48411750 -154673782 + LTR12 LTR ERV1 2 541 -173 213 39 0 0 chr5 48412093 48412119 -154673413 + (T)n Simple_repeat Simple_repeat 1 26 0 8666 117 37 72 chr5 48412159 48413790 -154671742 + MER4A-int LTR ERV1 5023 6597 -1 1872 135 138 39 chr5 48413795 48413931 -154671601 + MER4A LTR ERV1 1 122 -542 2168 121 3 0 chr5 48413931 48414228 -154671304 + AluSp SINE Alu 1 298 -15 1872 135 138 39 chr5 48414228 48414642 -154670890 + MER4A LTR ERV1 122 664 0 1583 220 94 13 chr5 48414642 48415015 -154670517 - MSTB LTR MaLR -23 403 1 3256 166 16 14 chr5 48415015 48415047 -154670485 + LTR26 LTR ERV1 50 80 -523 1926 181 77 48 chr5 48415047 48415462 -154670070 - MSTA LTR MaLR 0 428 2 3256 166 16 14 chr5 48415462 48415982 -154669550 + LTR26 LTR ERV1 80 603 0 835 266 0 30 chr5 48415982 48416245 -154669287 - AluJo SINE Alu -57 255 1 206 298 36 24 chr5 48416897 48416981 -154668551 - MIR SINE MIR -140 122 38 2442 69 3 0 chr5 48417082 48417385 -154668147 + AluY SINE Alu 1 304 -7 3076 167 12 112 chr5 48417790 48418274 -154667258 + LTR26 LTR ERV1 1 532 -71 1713 115 50 57 chr5 48418274 48418553 -154666979 + AluSg SINE Alu 1 277 -33 216 0 0 0 chr5 48418555 48418579 -154666953 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3076 167 12 112 chr5 48418579 48418760 -154666772 + LTR26 LTR ERV1 533 602 -1 198 0 0 0 chr5 48418795 48418817 -154666715 + (T)n Simple_repeat Simple_repeat 1 22 0 3361 70 11 16 chr5 48418990 48419432 -154666100 - SVA Other Other -3 1383 944 7722 48 11 4 chr5 48419458 48420968 -154664564 - SVA Other Other -799 1383 20 696 153 105 43 chr5 48421026 48421263 -154664269 - LTR49-int LTR ERV1 -2450 3881 3653 1541 184 17 24 chr5 48421263 48421551 -154663981 + AluJo SINE Alu 1 286 -26 2184 110 0 0 chr5 48421613 48421904 -154663628 - AluSx SINE Alu -17 295 5 1252 185 20 73 chr5 48421971 48422016 -154663516 - LTR49-int LTR ERV1 -2741 3590 3544 1814 179 3 31 chr5 48422016 48422334 -154663198 - AluJb SINE Alu -3 309 1 1252 185 20 73 chr5 48422334 48422590 -154662942 - LTR49-int LTR ERV1 -2787 3544 3305 871 144 46 52 chr5 48422608 48422781 -154662751 - LTR49-int LTR ERV1 -4662 1669 1498 5510 155 32 43 chr5 48423038 48424557 -154660975 - LTR49-int LTR ERV1 -4465 1481 1 979 186 50 27 chr5 48424559 48424780 -154660752 - LTR49 LTR ERV1 0 595 370 906 163 13 0 chr5 48424755 48424908 -154660624 - LTR49 LTR ERV1 -437 158 4 * 1405 179 125 66 chr5 48425020 48425460 -154660072 - MER31B LTR ERV1 0 466 1 2796 122 72 75 chr5 48426100 48426224 -154659308 + LTR64 LTR ERVK 3 126 -432 2144 112 7 0 chr5 48426224 48426541 -154658991 + AluSx SINE Alu 1 319 0 2796 122 72 75 chr5 48426541 48426608 -154658924 + LTR64 LTR ERVK 126 192 -366 2172 99 0 0 chr5 48426608 48426914 -154658618 + AluSq SINE Alu 1 306 0 2796 122 72 75 chr5 48426914 48427275 -154658257 + LTR64 LTR ERVK 192 558 0 2273 179 41 19 chr5 48427276 48427740 -154657792 + MER67A LTR ERV1 1 474 -69 4933 174 29 8 chr5 48429420 48430281 -154655251 + MER49 LTR ERV1 1 881 -42 668 169 0 73 chr5 48430290 48430426 -154655106 + AluSq/x SINE Alu 7 132 -181 2061 158 0 3 chr5 48430435 48430745 -154654787 + AluJb SINE Alu 3 311 -1 208 355 65 16 chr5 48430867 48430991 -154654541 - L2 LINE L2 -7 3265 3136 2260 103 0 31 chr5 48431137 48431457 -154654075 + AluSq SINE Alu 1 310 -3 584 241 9 0 chr5 48432095 48432211 -154653321 - MSTB LTR MaLR -255 171 55 2271 87 14 0 chr5 48432220 48432425 -154653107 - AluY SINE Alu 0 311 122 261 0 0 0 chr5 48432425 48432454 -154653078 + (TG)n Simple_repeat Simple_repeat 2 30 0 2271 87 14 0 chr5 48432454 48432578 -154652954 - AluY SINE Alu -189 122 1 813 129 0 8 chr5 48432578 48432702 -154652830 - FLAM_C SINE Alu -12 131 9 326 113 0 19 chr5 48432710 48432763 -154652769 - MSTB LTR MaLR -374 52 1 2367 97 0 0 chr5 48432936 48433236 -154652296 + AluY SINE Alu 1 300 -11 357 173 0 0 chr5 48433250 48433302 -154652230 + Alu SINE Alu 2 53 -249 2468 84 0 0 chr5 48434021 48434329 -154651203 + AluSg SINE Alu 1 308 -2 282 98 0 0 chr5 48434334 48434378 -154651154 + AluSg SINE Alu 1 36 -264 2469 81 0 3 chr5 48435301 48435610 -154649922 + AluY SINE Alu 1 308 -3 21 0 0 0 chr5 48435896 48435917 -154649615 + GC_rich Low_complexity Low_complexity 1 21 0 591 163 0 0 chr5 48435927 48436025 -154649507 - AluJ/FLAM SINE Alu -213 99 2 2155 74 0 15 chr5 48436906 48437175 -154648357 + AluSg SINE Alu 24 288 -22 266 260 41 0 chr5 48438302 48438375 -154647157 - L2 LINE L2 -10 3262 3187 2302 88 0 3 chr5 48438686 48438983 -154646549 - AluY SINE Alu -15 296 1 23 0 0 0 chr5 48439251 48439274 -154646258 + AT_rich Low_complexity Low_complexity 1 23 0 2271 88 17 0 chr5 48439990 48440284 -154645248 - AluSp SINE Alu -14 299 1 2447 86 7 0 chr5 48440416 48440718 -154644814 - AluSg SINE Alu -6 304 1 2166 105 3 0 chr5 48441071 48441356 -154644176 + AluSx SINE Alu 1 286 -26 450 265 56 28 chr5 48441363 48441612 -154643920 + L1MEd LINE L1 1005 1260 -4945 * 3864 228 60 45 chr5 48441607 48442193 -154643339 - L1MDa LINE L1 -4691 1849 1274 2298 90 3 13 chr5 48442193 48442492 -154643040 + AluY SINE Alu 1 296 -15 3864 228 60 45 chr5 48442492 48443136 -154642396 - L1MDa LINE L1 -5266 1274 600 1424 180 54 4 chr5 48443144 48443405 -154642127 - AluSx SINE Alu -38 274 1 1747 240 33 26 chr5 48443409 48443715 -154641817 - L1MDa LINE L1 -6107 433 122 1958 109 64 0 chr5 48443715 48443998 -154641534 - AluSx SINE Alu -11 301 1 1747 240 33 26 chr5 48443998 48444120 -154641412 - L1MDa LINE L1 -6418 122 2 2162 98 3 17 chr5 48444130 48444261 -154641271 + AluSg SINE Alu 1 132 -178 5987 90 38 2 chr5 48444261 48445059 -154640473 - LTR12 LTR ERV1 0 826 1 2162 98 3 17 chr5 48445059 48445224 -154640308 + AluSg SINE Alu 132 293 -17 2174 96 17 10 chr5 48445232 48445533 -154639999 + AluSg SINE Alu 1 303 -7 277 282 196 6 chr5 48445797 48446123 -154639409 + L1MEd LINE L1 1872 2259 -4137 2332 82 0 16 chr5 48446134 48446440 -154639092 + AluSg SINE Alu 1 301 -9 238 250 26 0 chr5 48446450 48446526 -154639006 - L2 LINE L2 -1182 2132 2055 2201 92 18 0 chr5 48447192 48447476 -154638056 - AluSg SINE Alu -21 289 1 356 352 190 0 chr5 48447534 48447750 -154637782 - MIR SINE MIR 0 262 6 1584 254 82 15 chr5 48448121 48448653 -154636879 + MLT1F1 LTR MaLR 1 567 0 222 342 0 51 chr5 48448697 48448814 -154636718 + L2 LINE L2 1355 1465 -1849 363 257 98 102 chr5 48448847 48449234 -154636298 + L2 LINE L2 1603 1989 -1325 2258 94 27 0 chr5 48449234 48449532 -154636000 - AluSp SINE Alu -7 306 1 363 257 98 102 chr5 48449532 48449665 -154635867 + L2 LINE L2 1989 2121 -1193 270 231 0 138 chr5 48449718 48449848 -154635684 - MER102a DNA MER1_type -1 329 218 1091 116 7 7 chr5 48449957 48450112 -154635420 + AluSq SINE Alu 1 155 -158 23 54 0 0 chr5 48450118 48450155 -154635377 + AT_rich Low_complexity Low_complexity 1 37 0 2024 86 90 4 chr5 48450161 48450439 -154635093 - AluY SINE Alu -8 303 2 2478 75 0 0 chr5 48450442 48450735 -154634797 - AluSg SINE Alu -7 303 11 431 300 123 74 chr5 48450799 48451157 -154634375 + L2 LINE L2 2173 2567 -747 1848 149 24 7 chr5 48451157 48451452 -154634080 - AluJb SINE Alu -12 300 1 431 300 123 74 chr5 48451452 48451620 -154633912 + L2 LINE L2 2567 2725 -589 748 114 8 23 chr5 48451800 48451931 -154633601 - FLAM_C SINE Alu -4 129 1 247 301 146 0 chr5 48452047 48452150 -154633382 + L2 LINE L2 3187 3304 -9 2213 95 3 0 chr5 48452335 48452630 -154632902 - AluSx SINE Alu -16 296 1 22 0 0 0 chr5 48452806 48452828 -154632704 + GC_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr5 48454142 48454165 -154631367 + (T)n Simple_repeat Simple_repeat 1 23 0 676 101 0 10 chr5 48455876 48455975 -154629557 + FLAM_A SINE Alu 4 101 -41 243 0 0 0 chr5 48455981 48456008 -154629524 + (TTTTC)n Simple_repeat Simple_repeat 1 27 0 183 250 117 0 chr5 48456037 48456097 -154629435 - MIR SINE MIR -123 139 73 280 320 163 20 chr5 48456562 48456715 -154628817 + MIR SINE MIR 74 248 -14 1303 164 0 23 chr5 48456721 48456941 -154628591 + AluJo SINE Alu 85 299 -13 682 213 56 6 chr5 48457191 48457351 -154628181 - AluJb SINE Alu -11 301 134 1923 114 7 7 chr5 48457391 48457662 -154627870 + AluSq SINE Alu 1 271 -42 1861 154 0 24 chr5 48457710 48458008 -154627524 + AluJb SINE Alu 2 292 -20 725 215 125 5 chr5 48458105 48458305 -154627227 - MER58A DNA MER1_type 0 224 1 483 196 138 20 chr5 48458356 48458530 -154627002 - L1MA10 LINE L1 -2 6332 5983 1908 96 73 0 chr5 48458618 48458890 -154626642 + AluSx SINE Alu 2 293 -19 424 129 0 0 chr5 48458891 48458953 -154626579 + AluS SINE Alu 2 63 -255 2245 206 49 11 chr5 48458962 48459497 -154626035 - L1ME1 LINE L1 -310 5856 5302 1962 231 40 38 chr5 48459511 48460017 -154625515 - LTR40a LTR ERVL -5 514 8 352 299 10 10 chr5 48460027 48460124 -154625408 - HERVL40 LTR ERVL -9 5521 5425 2220 110 7 7 chr5 48460125 48460426 -154625106 + AluSx SINE Alu 1 301 -11 289 168 103 0 chr5 48460551 48460658 -154624874 + MER51-int LTR ERV1 2281 2398 -5418 * 1137 81 25 128 chr5 48460652 48460786 -154624746 + MER51-int LTR ERV1 2808 2954 -4862 2795 7 0 3 chr5 48460786 48461089 -154624443 - AluYa5 SINE Alu -9 302 1 1137 81 25 128 chr5 48461089 48461108 -154624424 + MER51-int LTR ERV1 2954 2973 -4843 2036 97 17 30 chr5 48461108 48461406 -154624126 - AluSp SINE Alu -11 302 9 1137 81 25 128 chr5 48461406 48461486 -154624046 + MER51-int LTR ERV1 2973 3018 -4798 649 48 39 29 chr5 48461492 48461596 -154623936 + MER57-int LTR ERV1 4899 5003 -2534 575 121 10 20 chr5 48461597 48461696 -154623836 + MER57-int LTR ERV1 5250 5347 -2190 2272 99 7 3 chr5 48462252 48462554 -154622978 + AluSx SINE Alu 10 312 0 2408 73 0 22 chr5 48462824 48463137 -154622395 - AluSp SINE Alu -7 306 1 2231 114 0 3 chr5 48463138 48463436 -154622096 - AluSx SINE Alu -15 297 1 2189 103 7 3 chr5 48463452 48463744 -154621788 - AluSx SINE Alu -19 293 1 323 224 0 47 chr5 48464261 48464346 -154621186 + MIR SINE MIR 161 241 -21 224 307 79 0 chr5 48464663 48464764 -154620768 - MIR SINE MIR -65 143 35 2245 116 0 7 chr5 48464773 48465083 -154620449 - AluSx SINE Alu -4 308 1 2063 120 10 7 chr5 48465454 48465755 -154619777 + AluSq SINE Alu 1 302 -11 994 54 78 0 chr5 48465965 48466094 -154619438 + MER85 DNA T2_type 1 139 0 6922 182 55 53 chr5 48466094 48466958 -154618574 + L1MB1 LINE L1 3429 4290 -1878 2271 93 16 10 chr5 48466958 48467269 -154618263 - AluSq SINE Alu 0 313 1 2339 69 14 0 chr5 48467279 48467567 -154617965 - AluSp SINE Alu -21 292 1 6922 182 55 53 chr5 48467567 48467739 -154617793 + L1MB1 LINE L1 4298 4468 -1700 1695 118 118 18 chr5 48467739 48468011 -154617521 + AluSx SINE Alu 1 299 -13 6922 182 55 53 chr5 48468011 48468072 -154617460 + L1MB1 LINE L1 4468 4527 -1641 1134 156 85 31 chr5 48468072 48468110 -154617422 + MER46A DNA MER2_type 1 36 -2695 1949 140 21 0 chr5 48468110 48468396 -154617136 + AluSg SINE Alu 2 293 -17 1134 156 85 31 chr5 48468396 48468581 -154616951 + MER46A DNA MER2_type 36 236 0 6922 182 55 53 chr5 48468581 48468751 -154616781 + L1MB1 LINE L1 4527 4695 -1473 1435 127 110 101 chr5 48468751 48469059 -154616473 - AluY SINE Alu 0 311 1 6922 182 55 53 chr5 48469059 48470519 -154615013 + L1MB1 LINE L1 4695 6166 -2 2127 112 17 0 chr5 48470646 48470940 -154614592 + AluSp SINE Alu 1 299 -14 1716 162 3 30 chr5 48472208 48472511 -154613021 + AluJb SINE Alu 1 295 -17 817 278 43 24 chr5 48472565 48472820 -154612712 + MIR SINE MIR 2 261 -1 2092 122 0 7 chr5 48472981 48473288 -154612244 - AluSx SINE Alu 0 305 1 214 290 97 0 chr5 48473426 48473488 -154612044 + L2 LINE L2 3205 3272 0 1854 141 10 10 chr5 48473755 48474052 -154611480 + AluJb SINE Alu 1 297 -15 416 250 32 24 chr5 48474205 48474329 -154611203 - L1M4 LINE L1 -5377 1165 1041 2193 72 4 11 chr5 48474329 48474608 -154610924 + AluSg1 SINE Alu 1 277 -32 1789 95 11 23 chr5 48474608 48474872 -154610660 - AluSq SINE Alu -52 261 1 1934 147 0 14 chr5 48474972 48475264 -154610268 - AluJb SINE Alu -24 288 1 2249 88 10 7 chr5 48475295 48475589 -154609943 - AluSc SINE Alu -14 295 1 1547 248 54 73 chr5 48475795 48476171 -154609361 - L1M4 LINE L1 -5575 967 585 2551 80 0 0 chr5 48476171 48476482 -154609050 - AluY SINE Alu 0 311 1 1877 134 79 3 chr5 48476484 48476775 -154608757 - AluSq SINE Alu 0 313 1 1547 248 54 73 chr5 48476775 48476972 -154608560 - L1M4 LINE L1 -5958 584 402 209 264 0 0 chr5 48477005 48477058 -154608474 + MIR SINE MIR 184 236 -26 226 292 33 42 chr5 48477066 48477186 -154608346 + L2 LINE L2 2937 3055 -217 2156 112 3 20 chr5 48477615 48477920 -154607612 + AluSx SINE Alu 1 300 -12 659 269 119 13 chr5 48478095 48478322 -154607210 + HsTC2 DNA Tc2 186 436 -1462 2423 58 3 29 chr5 48478551 48478861 -154606671 + AluY SINE Alu 1 302 -9 2081 121 18 0 chr5 48478870 48479150 -154606382 + AluSx SINE Alu 1 285 -27 186 43 0 0 chr5 48479150 48479173 -154606359 + (TA)n Simple_repeat Simple_repeat 1 23 0 1187 236 143 21 chr5 48479185 48479618 -154605914 - L1ME1 LINE L1 -95 6071 5586 1880 127 15 4 chr5 48479643 48479911 -154605621 + AluSq SINE Alu 1 271 -42 1757 152 10 27 chr5 48479959 48480255 -154605277 + AluJb SINE Alu 2 292 -20 725 215 125 5 chr5 48480352 48480552 -154604980 - MER58A DNA MER1_type 0 224 1 483 196 138 20 chr5 48480603 48480777 -154604755 - L1MA10 LINE L1 -2 6332 5983 1995 95 66 0 chr5 48480865 48481139 -154604393 + AluSx SINE Alu 2 293 -19 337 253 27 0 chr5 48481139 48481214 -154604318 + AluS SINE Alu 1 77 -222 2235 204 49 11 chr5 48481214 48481744 -154603788 - L1ME1 LINE L1 -315 5851 5302 1962 231 40 38 chr5 48481758 48482264 -154603268 - LTR40a LTR ERVL -5 514 8 758 207 4 134 chr5 48482274 48482375 -154603157 - HERVL40 LTR ERVL -9 5521 5408 2075 108 52 7 chr5 48482375 48482661 -154602871 + AluSq SINE Alu 1 299 -14 758 207 4 134 chr5 48482661 48482834 -154602698 - HERVL40 LTR ERVL -122 5408 5283 285 309 25 0 chr5 48482832 48482913 -154602619 - HERVL40 LTR ERVL -172 2865 2783 * 279 349 47 41 chr5 48482913 48483175 -154602357 - MER89-int LTR ERV1 -345 6455 6111 1815 145 11 0 chr5 48483294 48483600 -154601932 - AluSx SINE Alu 0 309 1 322 263 105 48 chr5 48483645 48483854 -154601678 - HERVL40 LTR ERVL -327 2710 2490 1938 140 11 0 chr5 48483865 48484168 -154601364 - AluSx SINE Alu 0 306 1 5657 236 70 51 chr5 48484367 48484470 -154601062 - HERVL40 LTR ERVL -693 4678 4578 1846 174 0 10 chr5 48484470 48484775 -154600757 - AluJb SINE Alu -10 302 1 5657 236 70 51 chr5 48484775 48485208 -154600324 - HERVL40 LTR ERVL -793 4578 4155 1943 118 12 59 chr5 48485208 48485529 -154600003 + AluSq SINE Alu 1 306 -7 5657 236 70 51 chr5 48485529 48485998 -154599534 - HERVL40 LTR ERVL -1216 4155 3696 2243 108 0 7 chr5 48485998 48486295 -154599237 + AluSx SINE Alu 5 299 -13 5657 236 70 51 chr5 48486295 48486986 -154598546 - HERVL40 LTR ERVL -1675 3696 2044 3218 241 49 31 chr5 48487025 48487899 -154597633 - HERVL40 LTR ERVL -2595 2935 2046 2662 260 60 59 chr5 48488037 48488620 -154596912 - HERVL40 LTR ERVL -4073 1457 876 867 114 0 79 chr5 48488620 48488760 -154596772 + FLAM_C SINE Alu 1 129 -4 2662 260 60 59 chr5 48488760 48489492 -154596040 - HERVL40 LTR ERVL -4654 876 174 1427 216 50 89 chr5 48489494 48489841 -154595691 - MLT1C LTR MaLR -4 463 104 2008 113 14 0 chr5 48489841 48490125 -154595407 - AluSp SINE Alu -22 291 4 1427 216 50 89 chr5 48490125 48490140 -154595392 - MLT1C LTR MaLR -363 104 90 2472 84 7 0 chr5 48490140 48490450 -154595082 - AluSp SINE Alu -1 312 1 1427 216 50 89 chr5 48490450 48490568 -154594964 - MLT1C LTR MaLR -377 90 1 701 251 6 24 chr5 48490568 48490735 -154594797 - HERVL40 LTR ERVL -5350 180 17 1554 254 133 13 chr5 48490744 48491204 -154594328 - LTR40a LTR ERVL -4 515 1 1431 203 99 85 chr5 48491224 48491272 -154594260 - L1M4 LINE L1 -852 5294 5248 2352 99 0 3 chr5 48491272 48491586 -154593946 + AluSq SINE Alu 1 313 0 1431 203 99 85 chr5 48491586 48491753 -154593779 - L1M4 LINE L1 -898 5248 5085 2535 73 0 6 chr5 48491753 48492066 -154593466 + AluY SINE Alu 1 311 0 1431 203 99 85 chr5 48492066 48492081 -154593451 - L1M4 LINE L1 -1061 5085 5072 1690 185 11 0 chr5 48492081 48492351 -154593181 + AluJb SINE Alu 1 273 -39 1431 203 99 85 chr5 48492351 48492539 -154592993 - L1M4 LINE L1 -1074 5072 4888 2346 96 10 0 chr5 48492539 48492840 -154592692 - AluSp SINE Alu -9 304 1 1431 203 99 85 chr5 48492840 48493005 -154592527 - L1M4 LINE L1 -1258 4888 4700 1219 93 4 93 chr5 48494288 48494546 -154590986 + AluSg/x SINE Alu 70 304 -8 728 223 211 59 chr5 48494554 48494895 -154590637 + L2 LINE L2 1799 2191 -1123 725 217 45 0 chr5 48494925 48495082 -154590450 - LTR16C LTR ERVL -1 490 327 732 289 55 17 chr5 48495121 48495356 -154590176 - LTR16C LTR ERVL -244 247 4 1529 229 72 7 chr5 48495367 48495782 -154589750 + L2 LINE L2 2313 2754 -560 325 301 85 2 chr5 48495855 48496093 -154589439 + L2 LINE L2 2768 3069 -244 1459 137 0 0 chr5 48496129 48496378 -154589154 - AluSc SINE Alu 0 323 75 2356 60 3 16 chr5 48496495 48496809 -154588723 - AluY SINE Alu -1 310 1 657 195 143 17 chr5 48496810 48497041 -154588491 - HAL1b LINE L1 -246 1102 843 422 224 79 40 chr5 48497089 48497241 -154588291 + L1MEd LINE L1 990 1147 -4972 434 155 42 0 chr5 48497260 48497331 -154588201 + MLT1A2 LTR MaLR 1 74 -300 801 267 4 25 chr5 48497857 48498097 -154587435 + MIR SINE MIR 2 236 -26 383 208 17 92 chr5 48498251 48498371 -154587161 + MIR3 SINE MIR 46 156 -52 205 333 16 24 chr5 48499519 48499645 -154585887 + (CGTG)n Simple_repeat Simple_repeat 1 125 0 338 216 0 40 chr5 48500136 48500261 -154585271 + CT-rich Low_complexity Low_complexity 1 120 0 826 128 0 0 chr5 48501614 48501739 -154583793 - FLAM_A SINE Alu 0 142 18 1914 151 0 10 chr5 48502240 48502539 -154582993 + AluJb SINE Alu 6 301 -11 2369 62 0 24 chr5 48503205 48503525 -154582007 + AluY SINE Alu 1 313 0 490 181 45 53 chr5 48503543 48503632 -154581900 - HAL1 LINE L1 -103 2404 2315 1804 166 0 45 chr5 48503632 48503945 -154581587 - AluJo SINE Alu -13 299 1 490 181 45 53 chr5 48503945 48503988 -154581544 - HAL1 LINE L1 -192 2315 2273 1731 152 16 54 chr5 48503989 48504304 -154581228 - AluJo SINE Alu -9 303 1 1177 40 23 17 chr5 48504991 48505168 -154580364 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 507 233 0 0 chr5 48505169 48505319 -154580213 + CT-rich Low_complexity Low_complexity 4 153 0 523 300 50 22 chr5 48505588 48505768 -154579764 + MIR SINE MIR 23 207 -55 2455 100 3 0 chr5 48505768 48506078 -154579454 + AluSp SINE Alu 1 311 -2 209 95 0 24 chr5 48506078 48506120 -154579412 + (TA)n Simple_repeat Simple_repeat 1 41 0 312 241 148 108 chr5 48506243 48506567 -154578965 - MLT1J LTR MaLR -65 446 110 507 158 40 164 chr5 48506675 48506751 -154578781 - MER94 DNA DNA 0 134 85 2074 95 32 14 chr5 48506751 48507034 -154578498 - AluSx SINE Alu -24 288 1 507 158 40 164 chr5 48507034 48507109 -154578423 - MER94 DNA DNA -49 85 2 2317 74 0 0 chr5 48507156 48507461 -154578071 - AluY SINE Alu 0 305 1 2047 130 0 3 chr5 48507705 48508004 -154577528 + AluSg SINE Alu 1 298 -12 2286 81 0 0 chr5 48508005 48508288 -154577244 + AluY SINE Alu 17 299 -12 2321 82 0 51 chr5 48508540 48508856 -154576676 + AluSc SINE Alu 1 300 -9 832 225 0 18 chr5 48509042 48509211 -154576321 - FRAM SINE Alu 0 166 1 2610 141 13 0 chr5 48510112 48510510 -154575022 + MER57A LTR ERV1 1 403 0 2091 92 0 7 chr5 48510606 48510877 -154574655 + AluSq SINE Alu 1 269 -44 428 243 12 35 chr5 48511024 48511193 -154574339 + GA-rich Low_complexity Low_complexity 4 168 0 1912 146 36 0 chr5 48511711 48512012 -154573520 + AluJb SINE Alu 1 312 0 444 281 96 22 chr5 48512196 48512374 -154573158 + MIR SINE MIR 61 251 -11 766 186 8 8 chr5 48512460 48512589 -154572943 + FLAM_C SINE Alu 3 131 -12 2317 75 0 0 chr5 48512694 48512999 -154572533 - AluY SINE Alu 0 305 1 1657 138 85 14 chr5 48513226 48513509 -154572023 + AluJo SINE Alu 2 304 -8 25 31 0 0 chr5 48514912 48514944 -154570588 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr5 48515092 48515113 -154570419 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 2374 104 3 0 chr5 48515311 48515620 -154569912 + AluSg SINE Alu 1 310 0 2108 128 13 7 chr5 48516598 48516903 -154568629 - AluSx SINE Alu -5 307 1 387 105 0 0 chr5 48517146 48517203 -154568329 + (GGGGA)n Simple_repeat Simple_repeat 4 60 0 296 250 152 0 chr5 48517349 48517441 -154568091 - L2 LINE L2 0 3313 3208 2262 136 149 102 chr5 48517676 48517877 -154567655 - LTR29 LTR ERV1 -5 617 427 2166 135 0 3 chr5 48517877 48518188 -154567344 + AluSx SINE Alu 1 310 -2 2262 136 149 102 chr5 48518188 48518575 -154566957 - LTR29 LTR ERV1 -195 427 1 295 336 67 57 chr5 48518618 48518901 -154566631 - L2 LINE L2 -424 2890 2605 408 50 0 81 chr5 48520136 48520235 -154565297 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 984 158 16 22 chr5 48520277 48520461 -154565071 - AluSp SINE Alu 0 313 131 2145 66 7 35 chr5 48520464 48520795 -154564737 - AluSg SINE Alu 0 323 1 1227 204 58 0 chr5 48521637 48521862 -154563670 - MER8 DNA MER2_type 0 239 2 1496 126 0 0 chr5 48522483 48522682 -154562850 - AluJb SINE Alu -27 285 87 751 167 83 7 chr5 48522738 48522882 -154562650 - MLT1B LTR MaLR -46 344 190 7985 151 50 21 chr5 48522903 48523885 -154561647 - Tigger1 DNA MER2_type -944 1474 522 2377 85 3 0 chr5 48523885 48524179 -154561353 - AluY SINE Alu -16 295 1 2263 72 0 17 chr5 48524186 48524476 -154561056 - AluSg1 SINE Alu -22 287 3 7985 151 50 21 chr5 48524476 48524913 -154560619 - Tigger1 DNA MER2_type -1901 517 5 2607 134 47 0 chr5 48525372 48525781 -154559751 - MSTC LTR MaLR 0 428 1 261 254 142 16 chr5 48526613 48526791 -154558741 + MIR SINE MIR 19 216 -46 664 255 104 62 chr5 48527128 48527308 -154558224 - L1MC/D LINE L1 -2000 5808 5612 1955 103 0 4 chr5 48527308 48527569 -154557963 - AluSg SINE Alu -10 300 41 664 255 104 62 chr5 48527569 48527647 -154557885 - L1MC/D LINE L1 -2196 5612 5539 2213 105 3 10 chr5 48528160 48528456 -154557076 - AluSg SINE Alu -15 295 2 2178 102 0 29 chr5 48528458 48528771 -154556761 - AluSx SINE Alu -8 304 1 395 152 15 15 chr5 48528958 48529024 -154556508 + AluSq/x SINE Alu 45 110 -193 527 87 0 0 chr5 48529024 48529093 -154556439 + AluSp/q SINE Alu 226 294 -19 2037 137 10 0 chr5 48529143 48529443 -154556089 - AluSx SINE Alu -9 303 1 720 130 89 49 chr5 48529448 48529571 -154555961 - FLAM_C SINE Alu -5 128 1 242 329 133 24 chr5 48529684 48529861 -154555671 + L2 LINE L2 2032 2247 -1067 2247 95 14 3 chr5 48529861 48530156 -154555376 + AluSx SINE Alu 1 298 -14 242 329 133 24 chr5 48530156 48530233 -154555299 + L2 LINE L2 2247 2314 -1000 219 365 0 0 chr5 48530434 48530497 -154555035 + L2 LINE L2 3192 3254 -18 25 0 0 0 chr5 48530641 48530666 -154554866 + AT_rich Low_complexity Low_complexity 1 25 0 2276 102 0 0 chr5 48531469 48531763 -154553769 + AluSq SINE Alu 1 294 -19 180 0 0 0 chr5 48533242 48533262 -154552270 + (A)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr5 48533552 48533580 -154551952 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr5 48534365 48534386 -154551146 + AT_rich Low_complexity Low_complexity 1 21 0 1553 231 138 81 chr5 48535054 48535750 -154549782 - MER21B LTR ERV1 -109 754 18 2160 114 7 0 chr5 48535750 48536049 -154549483 - AluSp SINE Alu -12 301 1 2102 107 3 7 chr5 48536207 48536532 -154549000 + AluSg SINE Alu 1 310 0 1396 181 57 7 chr5 48537343 48537625 -154547907 - AluJo SINE Alu -16 296 1 316 169 169 0 chr5 48538114 48538179 -154547353 - MER5A DNA MER1_type -1 188 113 2811 96 39 0 chr5 48538179 48538542 -154546990 - MER51B LTR ERV1 0 377 1 10974 127 83 46 chr5 48538544 48538815 -154546717 - MER51B-int LTR ERV1 -1 7815 7555 2458 84 0 7 chr5 48538815 48539124 -154546408 + AluSq SINE Alu 1 307 -6 10974 127 83 46 chr5 48539124 48539196 -154546336 - MER51B-int LTR ERV1 -261 7555 7487 2498 69 0 7 chr5 48539196 48539501 -154546031 + AluSg SINE Alu 1 303 -7 10974 127 83 46 chr5 48539501 48539817 -154545715 - MER51B-int LTR ERV1 -329 7487 7184 2304 99 0 10 chr5 48539817 48540131 -154545401 - AluSx SINE Alu -1 311 1 10974 127 83 46 chr5 48540131 48540394 -154545138 - MER51B-int LTR ERV1 -632 7184 6932 2358 66 0 44 chr5 48540394 48540713 -154544819 - AluY SINE Alu -6 305 1 10974 127 83 46 chr5 48540713 48540870 -154544662 - MER51B-int LTR ERV1 -884 6932 6782 2077 102 6 38 chr5 48540870 48541183 -154544349 + AluSq SINE Alu 1 303 -10 10974 127 83 46 chr5 48541183 48541411 -154544121 - MER51B-int LTR ERV1 -1034 6782 6564 2253 102 0 16 chr5 48541411 48541715 -154543817 - AluSx SINE Alu -13 299 1 10974 127 83 46 chr5 48541715 48542254 -154543278 - MER51B-int LTR ERV1 -1252 6564 6046 2179 67 42 3 chr5 48542254 48542538 -154542994 + AluY SINE Alu 1 295 -16 10974 127 83 46 chr5 48542538 48542906 -154542626 - MER51B-int LTR ERV1 -1770 6046 5693 2217 130 0 0 chr5 48542906 48543207 -154542325 - AluSg SINE Alu -9 301 1 10974 127 83 46 chr5 48543207 48543319 -154542213 - MER51B-int LTR ERV1 -2123 5693 5250 750 50 40 0 chr5 48543320 48543421 -154542111 - MER51-int LTR ERV1 -2534 5003 4899 1214 93 33 47 chr5 48543427 48543499 -154542033 - MER51-int LTR ERV1 -4798 3018 2947 2211 91 13 16 chr5 48543499 48543806 -154541726 + AluSp SINE Alu 1 306 -7 1214 93 33 47 chr5 48543806 48543947 -154541585 - MER51-int LTR ERV1 -4869 2947 2808 3603 98 3 36 chr5 48543961 48544194 -154541338 - MER51-int LTR ERV1 -5439 2377 2138 2288 78 0 10 chr5 48544194 48544503 -154541029 - AluY SINE Alu -5 306 1 3603 98 3 36 chr5 48544503 48544743 -154540789 - MER51-int LTR ERV1 -5678 2138 1926 2404 70 3 22 chr5 48544743 48545057 -154540475 - AluY SINE Alu -3 308 1 3603 98 3 36 chr5 48545057 48545185 -154540347 - MER51-int LTR ERV1 -5890 1926 1795 1993 94 45 4 chr5 48545185 48545480 -154540052 - AluSc SINE Alu 0 306 1 1046 88 0 22 chr5 48545480 48545616 -154539916 - AluSc SINE Alu -176 133 1 672 150 80 25 chr5 48545626 48545813 -154539719 - MER4A LTR ERV1 -133 531 276 357 253 20 30 chr5 48545816 48545915 -154539617 - MER4A LTR ERV1 -566 98 1 1251 107 5 25 chr5 48545915 48546111 -154539421 - LOR1-int LTR ERV1 -6901 1219 1028 2848 72 8 11 chr5 48546111 48546487 -154539045 + L1PA5 LINE L1 5779 6153 -1 1112 81 7 7 chr5 48546488 48546637 -154538895 + AluY SINE Alu 1 149 -162 874 108 102 13 chr5 48546652 48546809 -154538723 + AluY SINE Alu 32 202 -109 696 45 18 18 chr5 48547345 48547455 -154538077 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 486 46 0 0 chr5 48547462 48547527 -154538005 + (TTCTG)n Simple_repeat Simple_repeat 2 66 0 1851 139 4 14 chr5 48547531 48547676 -154537856 - AluSx SINE Alu -35 277 135 2153 104 3 7 chr5 48547676 48547975 -154537557 - AluSx SINE Alu -14 298 1 1851 139 4 14 chr5 48547975 48548109 -154537423 - AluSx SINE Alu -177 135 1 778 145 73 0 chr5 48548109 48548289 -154537243 - FLAM_C SINE Alu 0 189 1 2645 45 7 3 chr5 48548719 48549028 -154536504 + AluY SINE Alu 2 311 0 21 0 0 0 chr5 48549091 48549112 -154536420 + AT_rich Low_complexity Low_complexity 1 21 0 1872 156 7 0 chr5 48549622 48549917 -154535615 - AluSx SINE Alu -15 297 1 309 353 8 0 chr5 48550751 48550873 -154534659 + MIR3 SINE MIR 86 208 0 3062 140 24 8 chr5 48551141 48551641 -154533891 - L1MB8 LINE L1 -2 6176 5669 1296 156 69 0 chr5 48551661 48551892 -154533640 - L1MB8 LINE L1 -615 5569 5323 2273 100 10 0 chr5 48551892 48552192 -154533340 - AluSx SINE Alu -7 305 3 2230 105 3 0 chr5 48552199 48552493 -154533039 - AluSx SINE Alu -17 295 1 1913 181 43 19 chr5 48552519 48552890 -154532642 - MSTB LTR MaLR 0 426 47 604 194 47 0 chr5 48552892 48553021 -154532511 - FRAM SINE Alu -2 174 40 2276 121 12 3 chr5 48553054 48553386 -154532146 + THE1C LTR MaLR 1 335 -40 453 216 78 20 chr5 48553404 48553506 -154532026 + AluSg/x SINE Alu 76 183 -129 377 65 0 0 chr5 48553514 48553560 -154531972 + THE1C LTR MaLR 330 375 0 897 179 0 19 chr5 48553560 48553722 -154531810 - AluJo SINE Alu -153 159 1 426 73 0 0 chr5 48553722 48553777 -154531755 - MSTB LTR MaLR -371 55 1 1370 215 13 62 chr5 48553792 48553910 -154531622 - L1MB8 LINE L1 -851 5295 5173 2285 89 0 7 chr5 48553910 48554202 -154531330 - AluSg SINE Alu -20 290 1 1370 215 13 62 chr5 48554202 48554469 -154531063 - L1MB8 LINE L1 -973 5173 4929 2042 115 45 0 chr5 48554471 48554758 -154530774 - AluSx SINE Alu -12 300 1 292 308 58 6 chr5 48554788 48554944 -154530588 - L1M4c LINE L1 -4165 2219 2056 230 270 63 45 chr5 48555105 48555216 -154530316 + L2 LINE L2 3199 3311 -2 1820 137 95 0 chr5 48555370 48555655 -154529877 + AluSx SINE Alu 1 312 0 2467 143 21 0 chr5 48555667 48556051 -154529481 - MER57A LTR ERV1 -4 399 8 410 235 143 0 chr5 48556062 48556160 -154529372 + L2 LINE L2 3160 3271 -1 1811 159 6 25 chr5 48556623 48556938 -154528594 + AluJo SINE Alu 1 309 -3 2366 86 0 3 chr5 48557036 48557337 -154528195 + AluSg SINE Alu 2 301 -9 520 247 119 58 chr5 48557372 48557615 -154527917 + MIR SINE MIR 5 262 0 896 104 0 15 chr5 48558244 48558379 -154527153 - FLAM_C SINE Alu 0 133 1 866 66 16 16 chr5 48558512 48558633 -154526899 + AluSp/q SINE Alu 179 299 -14 1794 123 39 54 chr5 48558752 48558871 -154526661 - LTR56 LTR ERV1 0 445 326 2135 125 0 0 chr5 48558871 48559168 -154526364 - AluSg1 SINE Alu -12 297 1 1794 123 39 54 chr5 48559168 48559380 -154526152 - LTR56 LTR ERV1 -119 326 119 447 133 0 0 chr5 48559386 48559461 -154526071 + Alu SINE Alu 235 309 -3 573 129 89 20 chr5 48559464 48559565 -154525967 - LTR56 LTR ERV1 -329 116 9 1777 249 95 55 chr5 48559981 48560737 -154524795 - L2 LINE L2 -81 3191 2349 228 246 9 70 chr5 48561182 48561247 -154524285 + MIR SINE MIR 141 198 -64 2307 94 7 0 chr5 48561247 48561555 -154523977 + AluSx SINE Alu 3 312 0 228 246 9 70 chr5 48561555 48561603 -154523929 + MIR SINE MIR 198 247 -15 26 0 0 0 chr5 48561857 48561883 -154523649 + AT_rich Low_complexity Low_complexity 1 26 0 489 300 35 0 chr5 48562016 48562186 -154523346 - MIR3 SINE MIR -1 207 32 2459 65 0 0 chr5 48562319 48562612 -154522920 - AluY SINE Alu -18 293 1 1657 175 3 24 chr5 48562711 48563002 -154522530 + AluJb SINE Alu 3 287 -25 2198 108 3 10 chr5 48563266 48563572 -154521960 + AluSq SINE Alu 1 304 -9 2233 105 10 22 chr5 48563784 48564098 -154521434 - AluSg SINE Alu 0 310 1 1229 266 63 37 chr5 48564289 48564717 -154520815 - MLT1J LTR MaLR -19 492 50 670 231 40 17 chr5 48564717 48564890 -154520642 + MER5B DNA MER1_type 2 178 0 1229 266 63 37 chr5 48564890 48564924 -154520608 - MLT1J LTR MaLR -461 50 18 903 239 0 55 chr5 48565202 48565495 -154520037 + AluJo SINE Alu 1 277 -35 23 54 0 0 chr5 48565775 48565812 -154519720 + AT_rich Low_complexity Low_complexity 1 37 0 188 311 49 16 chr5 48568352 48568413 -154517119 + MIR SINE MIR 117 179 -83 354 23 0 0 chr5 48568418 48568461 -154517071 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 319 263 8 38 chr5 48568553 48568686 -154516846 - L1MC5 LINE L1 -33 7928 7800 685 160 0 0 chr5 48568691 48568791 -154516741 + AluS SINE Alu 2 101 -211 2139 129 7 0 chr5 48568815 48569118 -154516414 - AluSx SINE Alu -7 305 1 1735 214 28 56 chr5 48570105 48570618 -154514914 - L1ME3A LINE L1 -4 6166 5667 1724 198 0 3 chr5 48570618 48570916 -154514616 - AluJo SINE Alu -15 297 1 1735 214 28 56 chr5 48570916 48570940 -154514592 - L1ME3A LINE L1 -503 5667 5644 5835 127 24 27 chr5 48570953 48572261 -154513271 - L1PB3 LINE L1 -3 6151 4844 485 214 27 0 chr5 48572283 48572395 -154513137 - L1PB3 LINE L1 -1878 4268 4154 245 231 154 0 chr5 48573338 48573403 -154512129 + MIR3 SINE MIR 89 163 -45 674 246 52 11 chr5 48573405 48573742 -154511790 - MER113 DNA MER1_type? 0 521 106 555 310 140 0 chr5 48573751 48573980 -154511552 - MIR SINE MIR 0 262 2 451 330 34 4 chr5 48574318 48574554 -154510978 + L1ME LINE L1 5576 5818 -303 209 194 45 0 chr5 48574562 48574629 -154510903 + (TA)n Simple_repeat Simple_repeat 1 70 0 2475 70 3 0 chr5 48574700 48575000 -154510532 + AluY SINE Alu 1 301 -10 234 258 68 45 chr5 48575495 48575627 -154509905 - L1ME LINE L1 -346 5775 5641 606 237 8 23 chr5 48575733 48575864 -154509668 + FLAM_A SINE Alu 1 129 -4 2200 104 3 14 chr5 48576640 48576937 -154508595 + AluSg SINE Alu 1 294 -16 1041 157 3 141 chr5 48577482 48577781 -154507751 - L1 LINE L1 -2056 4090 3833 16775 54 3 6 chr5 48577807 48581429 -154504103 - L1PA5 LINE L1 -3 6151 2555 845 186 0 18 chr5 48582935 48583102 -154502430 + AluJb SINE Alu 149 312 0 372 217 0 0 chr5 48583160 48583220 -154502312 - AluS SINE Alu -243 60 1 2274 112 0 0 chr5 48583663 48583958 -154501574 + AluSq SINE Alu 2 296 -17 21 100 0 0 chr5 48585047 48585117 -154500415 + AT_rich Low_complexity Low_complexity 1 70 0 2164 100 3 35 chr5 48585126 48585445 -154500087 + AluSc SINE Alu 1 309 0 895 265 88 23 chr5 48585459 48585810 -154499722 + L1MC/D LINE L1 5302 5675 -2133 2109 107 31 7 chr5 48585926 48586216 -154499316 + AluSx SINE Alu 1 297 -15 1858 164 16 19 chr5 48586387 48586699 -154498833 + AluJb SINE Alu 1 311 -1 1864 96 8 8 chr5 48586975 48587225 -154498307 + AluSq SINE Alu 42 291 -22 2256 93 7 10 chr5 48587226 48587528 -154498004 + AluSq SINE Alu 4 304 -9 1111 114 120 3 chr5 48588373 48588681 -154496851 + SVA Other Other 523 866 -520 6168 78 15 45 chr5 48588695 48589678 -154495854 + SVA Other Other 433 1386 0 249 175 0 0 chr5 48589836 48589876 -154495656 + MER58A DNA MER1_type 42 81 -26 180 0 0 0 chr5 48589876 48589896 -154495636 + (A)n Simple_repeat Simple_repeat 1 20 0 9724 134 55 68 chr5 48589905 48590464 -154495068 + LTR49-int LTR ERV1 3886 4451 -1880 1983 118 7 26 chr5 48590464 48590768 -154494764 - AluY SINE Alu -13 298 1 9724 134 55 68 chr5 48590768 48591230 -154494302 + LTR49-int LTR ERV1 4451 4917 -1414 2292 110 3 0 chr5 48591230 48591530 -154494002 + AluSc SINE Alu 2 302 -7 9724 134 55 68 chr5 48591530 48592057 -154493475 + LTR49-int LTR ERV1 4917 5449 -882 2374 99 0 0 chr5 48592057 48592359 -154493173 + AluSx SINE Alu 1 302 -10 9724 134 55 68 chr5 48592359 48592532 -154493000 + LTR49-int LTR ERV1 5449 5623 -708 2555 72 0 0 chr5 48592532 48592836 -154492696 + AluY SINE Alu 1 304 -7 9724 134 55 68 chr5 48592836 48593097 -154492435 + LTR49-int LTR ERV1 5623 5846 -485 1289 203 13 51 chr5 48593100 48593411 -154492121 + MER4A LTR ERV1 4 302 -362 244 30 0 0 chr5 48593411 48593444 -154492088 + L1PA15 LINE L1 6127 6159 -6 838 222 0 18 chr5 48593544 48593715 -154491817 - FRAM SINE Alu -4 172 5 1497 131 131 41 chr5 48594349 48594663 -154490869 + MER4A LTR ERV1 1 342 -322 615 97 258 8 chr5 48594718 48594842 -154490690 + MER4C LTR ERV1 291 445 -20 528 313 37 31 chr5 48594867 48595161 -154490371 - L1ME3A LINE L1 -264 5906 5611 493 235 34 34 chr5 48595833 48595952 -154489580 - FLAM_A SINE Alu -14 119 1 1899 104 4 4 chr5 48595967 48596227 -154489305 - AluSx SINE Alu -21 291 32 373 125 0 0 chr5 48596267 48596323 -154489209 + Alu SINE Alu 245 300 -2 468 146 12 0 chr5 48596342 48596424 -154489108 - LTR23 LTR ERV1 -195 242 160 2376 90 0 3 chr5 48596501 48596801 -154488731 - AluSq SINE Alu -14 299 1 790 199 0 19 chr5 48596821 48596977 -154488555 - FRAM SINE Alu -4 172 20 719 174 65 7 chr5 48597000 48597138 -154488394 - LTR23 LTR ERV1 -291 146 1 2352 51 0 51 chr5 48597264 48597429 -154488103 - AluY SINE Alu -15 296 153 2336 56 7 10 chr5 48597429 48597731 -154487801 - AluY SINE Alu -10 301 1 2352 51 0 51 chr5 48597731 48597877 -154487655 - AluY SINE Alu -158 153 1 349 247 121 35 chr5 48597880 48598054 -154487478 - MER34 LTR ERV1 -50 492 304 552 178 102 170 chr5 48598082 48598191 -154487341 - MER34C LTR ERV1 -227 358 243 4704 175 22 39 chr5 48598191 48599176 -154486356 + LTR5 LTR ERVK 1 969 0 552 178 102 170 chr5 48599176 48599326 -154486206 - MER34C LTR ERV1 -342 243 125 2006 124 3 56 chr5 48599326 48599649 -154485883 - AluSx SINE Alu -6 306 1 552 178 102 170 chr5 48599649 48599730 -154485802 - MER34C LTR ERV1 -460 125 40 195 204 0 0 chr5 48600170 48600224 -154485308 + CT-rich Low_complexity Low_complexity 3 56 0 2394 117 32 59 chr5 48600523 48600932 -154484600 + MER48 LTR ERV1 1 398 0 17242 102 38 19 chr5 48600932 48603511 -154482021 + HERVH48 LTR ERV1 1 2628 -4026 2307 82 3 0 chr5 48603567 48603858 -154481674 + AluSp SINE Alu 1 292 -21 2254 97 16 10 chr5 48603868 48604179 -154481353 + AluSq SINE Alu 1 313 0 3802 197 59 10 chr5 48604179 48605043 -154480489 - L1 LINE L1 -1812 4334 3429 994 54 78 0 chr5 48605043 48605172 -154480360 - MER85 DNA T2_type 0 139 1 2063 120 10 7 chr5 48605381 48605682 -154479850 - AluSq SINE Alu -11 302 1 2242 114 0 7 chr5 48606053 48606360 -154479172 + AluSx SINE Alu 1 305 -7 224 307 79 0 chr5 48606369 48606470 -154479062 + MIR SINE MIR 35 143 -65 323 224 0 47 chr5 48606787 48606872 -154478660 - MIR SINE MIR -21 241 161 2189 103 7 3 chr5 48607390 48607682 -154477850 + AluSx SINE Alu 1 293 -19 2231 114 0 3 chr5 48607698 48607996 -154477536 + AluSx SINE Alu 1 297 -15 2408 73 0 22 chr5 48607997 48608310 -154477222 + AluSp SINE Alu 1 306 -7 2261 100 10 6 chr5 48608582 48608893 -154476639 - AluSx SINE Alu 0 312 1 368 250 86 21 chr5 48608905 48608922 -154476610 + MER46C DNA MER2_type 46 60 -278 2276 103 0 10 chr5 48608922 48609223 -154476309 + AluSg SINE Alu 1 298 -12 368 250 86 21 chr5 48609223 48609345 -154476187 + MER46C DNA MER2_type 60 194 -144 245 203 101 29 chr5 48609378 48609447 -154476085 + MER46C DNA MER2_type 264 337 -1 1291 164 34 127 chr5 48609506 48609642 -154475890 + AluJo SINE Alu 1 91 -211 1971 127 3 20 chr5 48609642 48609934 -154475598 + AluSx SINE Alu 1 287 -25 1291 164 34 127 chr5 48609934 48610120 -154475412 + AluJo SINE Alu 91 293 -9 2514 60 3 7 chr5 48610202 48610504 -154475028 - AluY SINE Alu -10 301 1 444 257 34 62 chr5 48611327 48611488 -154474044 - MER5A DNA MER1_type 0 189 34 341 267 48 48 chr5 48611488 48611653 -154473879 - MER5B DNA MER1_type -1 177 13 693 310 52 29 chr5 48611683 48611993 -154473539 + L1MDa LINE L1 11 327 -6213 320 245 88 125 chr5 48612488 48612704 -154472828 + L1MDa LINE L1 911 1110 -5420 194 355 0 16 chr5 48612711 48612773 -154472759 - MIR SINE MIR -110 98 38 2382 73 7 3 chr5 48613078 48613380 -154472152 - AluSp SINE Alu -10 303 1 2453 50 6 53 chr5 48613389 48613712 -154471820 - AluY SINE Alu -3 308 1 36241 64 9 12 chr5 48615680 48617150 -154468382 - L1PA6 LINE L1 -6 6148 4674 4918 159 28 36 chr5 48617150 48618127 -154467405 - LTR5 LTR ERVK 0 969 1 36241 64 9 12 chr5 48618127 48618244 -154467288 - L1PA6 LINE L1 -1480 4674 4558 2498 70 0 7 chr5 48618244 48618546 -154466986 + AluY SINE Alu 1 300 -11 36241 64 9 12 chr5 48618546 48622602 -154462930 - L1PA6 LINE L1 -1596 4558 13 1587 196 97 20 chr5 48623237 48623639 -154461893 - MER39 LTR ERV1 0 707 275 3833 181 63 105 chr5 48623763 48623901 -154461631 - MER31-int LTR ERV1 -168 6163 6021 2276 101 20 0 chr5 48623901 48624197 -154461335 + AluSp SINE Alu 1 302 -11 3833 181 63 105 chr5 48624197 48624563 -154460969 - MER31-int LTR ERV1 -310 6021 5641 1994 147 3 0 chr5 48624563 48624856 -154460676 - AluSx SINE Alu -18 294 1 1642 197 3 3 chr5 48624857 48625156 -154460376 - AluJb SINE Alu -13 299 1 3833 181 63 105 chr5 48625156 48625667 -154459865 - MER31-int LTR ERV1 -689 5642 3880 483 237 151 13 chr5 48626257 48626409 -154459123 - MER69A DNA AcHobo -4 173 1 3775 80 75 14 chr5 48626445 48627006 -154458526 - LTR61 LTR ERV1 0 595 1 698 254 48 54 chr5 48627446 48627777 -154457755 + L1M4 LINE L1 3703 4031 -2115 1090 136 92 0 chr5 48627784 48627990 -154457542 + LTR49 LTR ERV1 1 225 -370 565 168 224 51 chr5 48627987 48628183 -154457349 + LTR29 LTR ERV1 389 618 -4 * 2028 130 38 12 chr5 48628189 48628535 -154456997 + LTR29-int LTR ERV1 1 355 -5976 1768 131 57 20 chr5 48628585 48628883 -154456649 - AluSx SINE Alu -3 309 1 1220 210 98 18 chr5 48628886 48629162 -154456370 - AluJo SINE Alu -14 298 1 331 167 36 71 chr5 48629164 48629248 -154456284 - MER34C LTR ERV1 -492 93 13 302 0 26 0 chr5 48629326 48629364 -154456168 + (CA)n Simple_repeat Simple_repeat 1 39 0 2020 150 0 10 chr5 48629819 48630133 -154455399 + AluSx SINE Alu 1 311 -1 26 0 0 0 chr5 48630123 48630149 -154455383 + AT_rich Low_complexity Low_complexity 1 26 0 321 221 29 86 chr5 48630240 48630380 -154455152 + MER104 DNA Tc2 5 136 -44 1375 201 3 63 chr5 48630423 48630742 -154454790 - AluJb SINE Alu -4 308 9 834 68 0 17 chr5 48632001 48632119 -154453413 + AluJ SINE Alu 4 119 -183 336 280 86 72 chr5 48632129 48632489 -154453043 - L1MCa LINE L1 -4217 2209 1907 807 177 85 0 chr5 48632509 48632673 -154452859 + AluJ SINE Alu 121 298 -14 304 245 69 108 chr5 48634850 48635054 -154450478 - L1 LINE L1 -2885 3261 3066 308 309 125 51 chr5 48636754 48637090 -154448442 - L1 LINE L1 -2981 3165 2805 1374 196 39 0 chr5 48637269 48637555 -154447977 + AluJb SINE Alu 1 297 -15 1523 184 57 13 chr5 48639262 48639444 -154446088 - AluJo SINE Alu 0 312 110 426 39 0 0 chr5 48639444 48639496 -154446036 + (TG)n Simple_repeat Simple_repeat 1 52 0 1523 184 57 13 chr5 48639496 48639612 -154445920 - AluJo SINE Alu -202 110 1 344 320 31 8 chr5 48639707 48639835 -154445697 - LTR33 LTR ERVL -373 148 18 1824 173 7 7 chr5 48639884 48640191 -154445341 - AluSx SINE Alu -5 307 1 2215 274 47 36 chr5 48640221 48641162 -154444370 + L1M4 LINE L1 3356 4306 -1840 731 158 0 0 chr5 48642658 48642798 -154442734 - AluSp/q SINE Alu 0 325 186 1174 64 56 56 chr5 48642803 48643036 -154442496 + AluY SINE Alu 5 237 -74 1264 185 128 64 chr5 48643580 48644018 -154441514 + MER31B LTR ERV1 1 466 0 885 175 7 0 chr5 48644130 48644284 -154441248 + LTR49 LTR ERV1 4 158 -437 869 183 59 27 chr5 48644259 48644478 -154441054 + LTR49 LTR ERV1 370 595 0 * 4641 158 51 45 chr5 48644479 48645966 -154439566 + LTR49-int LTR ERV1 1 1481 -4465 1115 147 199 36 chr5 48646092 48646343 -154439189 + LTR49-int LTR ERV1 1378 1669 -4662 1132 207 15 74 chr5 48646361 48646617 -154438915 + LTR49-int LTR ERV1 3305 3540 -2791 1874 177 3 31 chr5 48646617 48646934 -154438598 + AluJb SINE Alu 1 308 -4 1132 207 15 74 chr5 48646934 48647001 -154438531 + LTR49-int LTR ERV1 3540 3609 -2722 622 171 98 65 chr5 48646995 48647046 -154438486 + LTR49-int LTR ERV1 3569 3617 -3186 * 2230 112 0 22 chr5 48647046 48647360 -154438172 + AluSx SINE Alu 5 311 -1 622 171 98 65 chr5 48647360 48647400 -154438132 + LTR49-int LTR ERV1 3617 3654 -3149 1582 184 17 24 chr5 48647400 48647688 -154437844 - AluJo SINE Alu -26 286 1 622 171 98 65 chr5 48647688 48647925 -154437607 + LTR49-int LTR ERV1 3654 4353 -2450 5697 86 31 15 chr5 48647954 48648805 -154436727 + SVA Other Other 3 866 -520 6342 72 22 48 chr5 48648833 48650410 -154435122 + SVA Other Other 508 1386 0 236 175 0 0 chr5 48650569 48650609 -154434923 + MER58A DNA MER1_type 42 81 -26 198 0 0 0 chr5 48650609 48650631 -154434901 + (A)n Simple_repeat Simple_repeat 1 22 0 9088 136 55 66 chr5 48650640 48651199 -154434333 + LTR49-int LTR ERV1 3886 4450 -1881 2001 118 7 26 chr5 48651199 48651503 -154434029 - AluY SINE Alu -13 298 1 9088 136 55 66 chr5 48651503 48651965 -154433567 + LTR49-int LTR ERV1 4450 4916 -1415 2363 102 3 0 chr5 48651965 48652268 -154433264 + AluSc SINE Alu 2 305 -4 9088 136 55 66 chr5 48652268 48652792 -154432740 + LTR49-int LTR ERV1 4916 5444 -887 2401 99 0 0 chr5 48652792 48653095 -154432437 + AluSx SINE Alu 1 303 -9 9088 136 55 66 chr5 48653095 48653268 -154432264 + LTR49-int LTR ERV1 5444 5617 -714 2569 72 0 0 chr5 48653268 48653572 -154431960 + AluY SINE Alu 1 304 -7 9088 136 55 66 chr5 48653572 48653833 -154431699 + LTR49-int LTR ERV1 5617 5846 -485 1205 203 13 51 chr5 48653836 48654147 -154431385 + MER4A LTR ERV1 4 302 -362 232 30 0 0 chr5 48654147 48654180 -154431352 + L1PA15 LINE L1 6127 6159 -6 860 211 0 19 chr5 48654280 48654441 -154431091 - FRAM SINE Alu -4 172 15 1405 131 131 41 chr5 48655085 48655399 -154430133 + MER4A LTR ERV1 1 342 -322 570 105 258 8 chr5 48655454 48655578 -154429954 + MER4C LTR ERV1 291 445 -20 468 320 34 27 chr5 48655603 48655897 -154429635 - L1ME3A LINE L1 -264 5906 5611 521 235 34 34 chr5 48656569 48656688 -154428844 - FLAM_A SINE Alu -14 119 1 1845 111 8 4 chr5 48656700 48656962 -154428570 - AluSx SINE Alu -18 294 32 355 125 0 0 chr5 48657002 48657058 -154428474 + Alu SINE Alu 243 298 -2 439 146 12 0 chr5 48657077 48657159 -154428373 - LTR23 LTR ERV1 -195 242 160 2393 90 0 3 chr5 48657236 48657536 -154427996 - AluSq SINE Alu -14 299 1 802 201 0 19 chr5 48657553 48657712 -154427820 - FRAM SINE Alu -1 175 20 678 191 52 7 chr5 48657735 48657871 -154427661 - LTR23 LTR ERV1 -291 146 5 2360 51 0 51 chr5 48657999 48658163 -154427369 - AluY SINE Alu -15 296 154 2366 50 10 13 chr5 48658163 48658465 -154427067 - AluY SINE Alu -10 301 1 2360 51 0 51 chr5 48658465 48658612 -154426920 - AluY SINE Alu -157 154 1 457 213 78 153 chr5 48658615 48658926 -154426606 - MER34C LTR ERV1 -50 492 159 4913 177 21 38 chr5 48658926 48659911 -154425621 + LTR5 LTR ERVK 1 969 0 457 213 78 153 chr5 48659911 48660060 -154425472 - MER34C LTR ERV1 -383 159 90 2103 115 3 56 chr5 48660060 48660383 -154425149 - AluSx SINE Alu -6 306 1 457 213 78 153 chr5 48660383 48660467 -154425065 - MER34C LTR ERV1 -452 90 1 223 362 78 9 chr5 48660591 48660809 -154424723 + L2 LINE L2 2109 2341 -973 207 204 0 0 chr5 48660904 48660958 -154424574 + CT-rich Low_complexity Low_complexity 3 56 0 2457 117 32 59 chr5 48661257 48661666 -154423866 + MER48 LTR ERV1 1 398 0 16720 100 37 12 chr5 48661666 48664220 -154421312 + HERVH48 LTR ERV1 1 2618 -4036 435 167 36 167 chr5 48664220 48664285 -154421247 + LTR8A LTR ERV1 535 607 -120 2426 79 3 16 chr5 48664285 48664600 -154420932 + AluSp SINE Alu 1 311 -2 435 167 36 167 chr5 48664600 48664756 -154420776 + LTR8A LTR ERV1 607 727 0 2289 94 0 0 chr5 48664853 48665140 -154420392 + AluY SINE Alu 6 292 -19 2398 225 106 84 chr5 48665194 48666286 -154419246 - LTR28 LTR ERV1 -3 1726 1 1406 97 41 11 chr5 48666366 48666633 -154418899 + AluY SINE Alu 1 311 0 271 207 27 99 chr5 48666634 48666745 -154418787 + MER34 LTR ERV1 438 540 -2 1808 63 0 18 chr5 48666866 48667087 -154418445 - AluY SINE Alu -10 301 85 1121 70 0 0 chr5 48667087 48667215 -154418317 - AluY SINE Alu -183 128 1 2156 128 3 0 chr5 48667359 48667648 -154417884 + AluSx SINE Alu 1 290 -22 1993 110 82 25 chr5 48667820 48668175 -154417357 - THE1C LTR MaLR 0 375 1 1517 161 0 4 chr5 48670794 48671048 -154414484 - AluSg SINE Alu -4 306 54 32 0 0 0 chr5 48671629 48671661 -154413871 + AT_rich Low_complexity Low_complexity 1 32 0 1538 170 18 45 chr5 48672240 48672279 -154413253 - MER61D LTR ERV1 0 501 462 189 0 0 0 chr5 48672279 48672300 -154413232 + (TTG)n Simple_repeat Simple_repeat 2 22 0 2275 85 0 0 chr5 48672302 48672584 -154412948 - AluSx SINE Alu -30 282 1 1538 170 18 45 chr5 48672584 48672952 -154412580 - MER61D LTR ERV1 -40 461 3 1943 90 62 31 chr5 48673570 48674037 -154411495 - AluSp SINE Alu 0 313 1 2442 50 6 50 chr5 48674046 48674365 -154411167 - AluY SINE Alu -6 305 1 7113 65 12 27 chr5 48676333 48677818 -154407714 - L1PA6 LINE L1 -6 6148 4674 4985 160 29 36 chr5 48677818 48678779 -154406753 - LTR5 LTR ERVK -15 954 1 7113 65 12 27 chr5 48678779 48678845 -154406687 - L1PA6 LINE L1 -1480 4674 4609 13416 111 14 24 chr5 48728915 48730965 -154354567 - L1P LINE L1 -3898 2248 220 6274 50 3 1 chr5 48731065 48732068 -154353464 + L1P2 LINE L1 4597 5600 -555 635 37 12 0 chr5 48732068 48732150 -154353382 + L1PA2 LINE L1 6073 6155 0 * 8003 35 0 0 chr5 48732148 48733152 -154352380 + L1PA4 LINE L1 5152 6155 0 776 216 28 38 chr5 48734575 48734788 -154350744 + MER112 DNA MER1_type 1 211 -49 196 281 24 132 chr5 48735017 48735184 -154350348 + L2 LINE L2 2932 3080 -192 1899 158 6 19 chr5 48735401 48735717 -154349815 - AluJo SINE Alu 0 312 1 343 171 0 29 chr5 48736296 48736366 -154349166 + LTR33A LTR ERVL 439 506 -17 261 0 0 0 chr5 48736522 48736551 -154348981 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 2487 70 0 3 chr5 48736556 48736857 -154348675 - AluY SINE Alu -11 300 1 23105 59 5 1 chr5 48737030 48740423 -154345109 + L1PA6 LINE L1 2434 5837 -317 2207 117 3 0 chr5 48740556 48740854 -154344678 - AluSx SINE Alu -13 299 1 278 199 88 88 chr5 48741645 48741781 -154343751 - MIR SINE MIR -7 255 120 702 283 103 32 chr5 48743439 48743778 -154341754 - L2 LINE L2 0 3313 2951 376 245 102 27 chr5 48743778 48743925 -154341607 - LTR16C LTR ERVL -1 490 333 665 118 18 0 chr5 48743987 48744097 -154341435 + L1 LINE L1 3645 3756 -2390 243 217 0 0 chr5 48744279 48744325 -154341207 + L2 LINE L2 3262 3307 -6 280 222 0 0 chr5 48744464 48744518 -154341014 + MER96 DNA MER1_type? 16 69 -106 247 288 55 25 chr5 48745396 48745559 -154339973 - L1ME4a LINE L1 -4 6117 5950 571 318 41 0 chr5 48745729 48745924 -154339608 - L1ME4a LINE L1 -426 5695 5493 2271 149 59 55 chr5 48746200 48746251 -154339281 - MSTB LTR MaLR 0 426 377 2125 105 24 3 chr5 48746251 48746547 -154338985 - AluSg SINE Alu -8 302 1 2271 149 59 55 chr5 48746547 48746917 -154338615 - MSTB LTR MaLR -49 377 3 201 176 0 0 chr5 48748099 48748133 -154337399 + CT-rich Low_complexity Low_complexity 1 34 0 333 0 0 0 chr5 48748134 48748171 -154337361 + (TG)n Simple_repeat Simple_repeat 1 37 0 252 0 0 0 chr5 48748170 48748198 -154337334 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 444 115 21 21 chr5 48748297 48748393 -154337139 + CT-rich Low_complexity Low_complexity 4 99 0 213 232 0 80 chr5 48748676 48748801 -154336731 + A-rich Low_complexity Low_complexity 5 119 0 304 203 180 8 chr5 48748939 48749067 -154336465 + L1MCa LINE L1 1151 1300 -5126 328 184 55 73 chr5 48749973 48750082 -154335450 + MIR SINE MIR 112 218 -44 1871 154 0 13 chr5 48750940 48751239 -154334293 - AluJb SINE Alu -15 297 3 232 228 35 0 chr5 48751950 48752007 -154333525 + L2 LINE L2 2995 3053 -219 24 0 0 0 chr5 48752329 48752353 -154333179 + AT_rich Low_complexity Low_complexity 1 24 0 375 135 0 0 chr5 48752353 48752405 -154333127 - MER66B LTR ERV1 -140 346 295 2151 106 23 17 chr5 48752744 48753045 -154332487 + AluSx SINE Alu 1 303 -9 254 304 136 41 chr5 48754227 48754457 -154331075 - L2 LINE L2 -367 2947 2668 2172 114 0 23 chr5 48754457 48754765 -154330767 + AluSg SINE Alu 1 301 -9 254 304 136 41 chr5 48754765 48754903 -154330629 - L2 LINE L2 -646 2668 2544 819 263 47 24 chr5 48755033 48755288 -154330244 - Charlie8 DNA MER1_type -2136 281 21 612 276 134 0 chr5 48755338 48755577 -154329955 - LTR33 LTR ERVL -250 271 1 2810 198 51 2 chr5 48755845 48756435 -154329097 + L1MD2 LINE L1 5702 6320 -39 282 162 99 54 chr5 48756435 48756546 -154328986 - Charlie7 DNA MER1_type -38 2574 2459 425 226 0 12 chr5 48756556 48756640 -154328892 - Charlie7 DNA MER1_type -2512 100 18 294 231 13 26 chr5 48756876 48756954 -154328578 - L2 LINE L2 -560 2754 2678 190 229 229 17 chr5 48757012 48757130 -154328402 - L2 LINE L2 -774 2540 2398 1756 282 89 17 chr5 48757132 48757728 -154327804 + L2 LINE L2 1033 1671 -1643 2462 191 62 25 chr5 48757752 48758050 -154327482 + L1PBa LINE L1 2443 2729 -4133 2543 62 0 7 chr5 48758050 48758358 -154327174 + AluY SINE Alu 1 306 -5 2462 191 62 25 chr5 48758358 48758634 -154326898 + L1PBa LINE L1 2729 3035 -3827 2172 109 6 10 chr5 48758634 48758946 -154326586 - AluSq SINE Alu 0 313 3 2462 191 62 25 chr5 48758946 48759031 -154326501 + L1PBa LINE L1 3035 3115 -3747 3437 125 22 31 chr5 48759031 48759617 -154325915 + LTR8A LTR ERV1 1 581 -146 1664 106 35 0 chr5 48760072 48760299 -154325233 - AluSg/x SINE Alu -8 302 68 191 304 22 0 chr5 48761095 48761141 -154324391 - L2 LINE L2 -197 3075 3029 * 1057 292 59 24 chr5 48761139 48761564 -154323968 - L2 LINE L2 -8 3305 2866 740 158 38 45 chr5 48761704 48761837 -154323695 + FLAM_C SINE Alu 1 132 -1 531 239 221 14 chr5 48762004 48762217 -154323315 - MIR SINE MIR 0 262 6 2260 95 7 7 chr5 48762508 48762802 -154322730 + AluSq SINE Alu 1 294 -19 28 0 0 0 chr5 48762940 48762968 -154322564 + AT_rich Low_complexity Low_complexity 1 28 0 30637 63 114 1 chr5 48763236 48767399 -154318133 + L1P LINE L1 2 4634 -1512 961 312 86 21 chr5 48767550 48768073 -154317459 - ERVL LTR ERVL -830 4934 4378 374 360 12 6 chr5 48768045 48768209 -154317323 - ERVL LTR ERVL -2258 3506 3342 * 1959 306 81 19 chr5 48768351 48769325 -154316207 - ERVL LTR ERVL -1911 3085 2009 537 326 75 41 chr5 48769395 48769757 -154315775 - ERVL LTR ERVL -3828 1826 1453 5570 114 65 50 chr5 48769884 48770340 -154315192 - L1MA4A LINE L1 -2 6301 5853 2284 97 3 3 chr5 48770340 48770650 -154314882 - AluSx SINE Alu -2 310 1 5570 114 65 50 chr5 48770650 48771191 -154314341 - L1MA4A LINE L1 -450 5853 5289 270 0 0 0 chr5 48771191 48771221 -154314311 + (TTA)n Simple_repeat Simple_repeat 2 31 0 5570 114 65 50 chr5 48771221 48771285 -154314247 - L1MA4A LINE L1 -1014 5289 5227 2298 84 27 0 chr5 48771566 48771863 -154313669 - AluSp SINE Alu -8 305 1 1807 200 80 37 chr5 48772637 48773102 -154312430 - MLT1D LTR MaLR 0 505 21 499 257 57 7 chr5 48773209 48773349 -154312183 - LTR16C LTR ERVL -1 490 344 213 280 89 33 chr5 48773729 48773880 -154311652 - L2 LINE L2 -334 2938 2782 371 258 0 11 chr5 48774618 48774707 -154310825 - L3 LINE CR1 -7 1570 1483 190 281 78 62 chr5 48774939 48775067 -154310465 + L2 LINE L2 3184 3313 0 412 302 69 13 chr5 48777389 48777548 -154307984 + MIR SINE MIR 47 214 -48 2411 98 0 0 chr5 48777758 48778064 -154307468 - AluSc SINE Alu -3 306 1 832 169 0 15 chr5 48779032 48779168 -154306364 - AluJo SINE Alu -178 134 1 2176 118 7 3 chr5 48779491 48779788 -154305744 - AluSx SINE Alu -12 300 3 261 290 28 37 chr5 48781338 48781445 -154304087 + MIR3 SINE MIR 88 193 -15 680 236 75 55 chr5 48781878 48782132 -154303400 - MER112 DNA MER1_type 0 260 2 334 275 22 107 chr5 48783222 48783333 -154302199 + MIR SINE MIR 85 177 -85 2322 92 13 3 chr5 48783333 48783638 -154301894 + AluSq SINE Alu 1 308 -5 334 275 22 107 chr5 48783638 48783704 -154301828 + MIR SINE MIR 177 247 -15 200 376 21 21 chr5 48786117 48786210 -154299322 + L2 LINE L2 3150 3242 -30 1666 184 161 20 chr5 48787090 48787579 -154297953 - LTR10A LTR ERV1 0 609 1 16242 224 11 29 chr5 48787579 48792706 -154292826 - LTR10A-int LTR ERV1 0 6649 2762 1506 209 26 64 chr5 48792706 48793174 -154292358 - LTR7 LTR ERV1 0 450 1 22 88 0 0 chr5 48793182 48793239 -154292293 + AT_rich Low_complexity Low_complexity 1 57 0 2618 21 0 0 chr5 48793319 48793602 -154291930 + L1PA4 LINE L1 5870 6152 -3 1012 198 0 5 chr5 48793649 48793851 -154291681 - HERVH LTR ERV1 -154 7559 7359 431 169 28 34 chr5 48794001 48794179 -154291353 + CT-rich Low_complexity Low_complexity 4 180 0 300 173 11 73 chr5 48794214 48794405 -154291127 + CT-rich Low_complexity Low_complexity 2 180 0 1949 116 49 0 chr5 48794802 48795086 -154290446 - AluSx SINE Alu -14 298 1 1088 283 54 71 chr5 48795150 48795684 -154289848 + LTR67 LTR ERVL 2 526 -31 1985 127 3 3 chr5 48796979 48797286 -154288246 + AluSx SINE Alu 1 307 0 1665 212 182 46 chr5 48797349 48798018 -154287514 - LTR41 LTR ERVL -6 767 8 386 314 97 16 chr5 48798266 48798451 -154287081 - HAL1 LINE L1 -2307 200 1 1391 227 38 48 chr5 48798677 48799074 -154286458 - MLT2C1 LTR ERVL -4 393 1 14837 61 17 7 chr5 48799824 48801818 -154283714 - L1P LINE L1 -1010 5136 3122 30 27 0 0 chr5 48802539 48802576 -154282956 + AT_rich Low_complexity Low_complexity 1 37 0 470 320 47 79 chr5 48803901 48804307 -154281225 + L2 LINE L2 2877 3269 -3 1645 162 3 114 chr5 48804727 48805060 -154280472 + AluJo SINE Alu 1 296 -6 3225 171 33 3 chr5 48805202 48805771 -154279761 - L1MC3 LINE L1 0 7785 7200 233 242 32 16 chr5 48805773 48805835 -154279697 - MLT1F1 LTR MaLR -434 133 71 881 179 22 85 chr5 48805850 48806027 -154279505 - AluJo SINE Alu -18 294 132 2056 97 23 48 chr5 48806027 48806337 -154279195 - AluSq SINE Alu -11 302 1 881 179 22 85 chr5 48806337 48806383 -154279149 - AluJo SINE Alu -180 132 85 612 256 70 42 chr5 48806593 48807033 -154278499 - MLT1H LTR MaLR -1 548 23 1484 151 37 9 chr5 48807857 48808294 -154277238 - LTR54 LTR ERV1 0 510 1 195 184 53 0 chr5 48808329 48808367 -154277165 - L2 LINE L2 -16 3256 3217 22 0 0 0 chr5 48808396 48808418 -154277114 + AT_rich Low_complexity Low_complexity 1 22 0 2178 168 40 175 chr5 48808512 48808802 -154276730 + LTR8A LTR ERV1 34 361 -366 3380 135 16 6 chr5 48808802 48809306 -154276226 - MER9 LTR ERVK -2 509 1 2178 168 40 175 chr5 48809306 48809817 -154275715 + LTR8A LTR ERV1 361 727 0 22 56 0 0 chr5 48809903 48809939 -154275593 + AT_rich Low_complexity Low_complexity 1 36 0 2376 108 46 8 chr5 48809946 48810315 -154275217 - L1PA13 LINE L1 -5 6158 5776 6201 150 26 31 chr5 48810321 48810488 -154275044 - L1PA13 LINE L1 -740 5428 5262 3934 95 54 2 chr5 48810488 48811025 -154274507 - L1PA11 LINE L1 -2 6172 5608 6201 150 26 31 chr5 48811025 48812098 -154273434 - L1PA13 LINE L1 -906 5262 4207 24 32 0 0 chr5 48812117 48812148 -154273384 + AT_rich Low_complexity Low_complexity 1 31 0 381 295 38 0 chr5 48812940 48813045 -154272487 - L2 LINE L2 -15 3298 3190 443 77 15 0 chr5 48813779 48813844 -154271688 - MER41B LTR ERV1 -87 548 483 218 192 19 0 chr5 48813971 48814023 -154271509 + (TG)n Simple_repeat Simple_repeat 2 54 0 591 149 28 0 chr5 48814058 48814165 -154271367 + L1MA6 LINE L1 6190 6299 -1 11813 105 56 63 chr5 48814280 48814670 -154270862 - L1P3 LINE L1 -3550 2911 2520 2142 135 0 0 chr5 48814670 48814966 -154270566 - AluSc SINE Alu -11 298 3 11813 105 56 63 chr5 48814966 48817326 -154268206 - L1P3 LINE L1 -3941 2520 36 1213 144 5 0 chr5 48817306 48817494 -154268038 - L1P3 LINE L1 -6271 190 2 * 391 319 57 32 chr5 48817695 48817852 -154267680 + MIR SINE MIR 27 187 -75 720 260 41 37 chr5 48817959 48818201 -154267331 + MLT1J LTR MaLR 1 243 -268 1977 154 172 27 chr5 48818219 48818627 -154266905 + MLT1C LTR MaLR 1 467 0 312 91 0 0 chr5 48818679 48818723 -154266809 + (GA)n Simple_repeat Simple_repeat 2 45 0 756 218 32 26 chr5 48818723 48818932 -154266600 - MLT1E LTR MaLR -355 212 3 2019 119 13 22 chr5 48819075 48819386 -154266146 - AluSx SINE Alu -4 308 1 841 230 100 81 chr5 48819411 48819909 -154265623 + MLT1H1 LTR MaLR 1 547 -8 2153 130 3 0 chr5 48820371 48820700 -154264832 - AluSq SINE Alu 0 330 1 748 236 134 0 chr5 48820749 48820965 -154264567 - L1ME3A LINE L1 -11 6159 5915 2370 191 93 8 chr5 48820984 48821470 -154264062 + MLT1F LTR MaLR 9 535 -7 2293 168 61 7 chr5 48821470 48821880 -154263652 - MSTB1 LTR MaLR 0 432 1 994 208 41 143 chr5 48821894 48822015 -154263517 - L1ME3A LINE L1 -270 5900 5768 2100 151 0 0 chr5 48822015 48822326 -154263206 - AluSx SINE Alu -1 311 1 994 208 41 143 chr5 48822326 48822459 -154263073 - L1ME3A LINE L1 -402 5768 5711 2160 120 0 7 chr5 48822459 48822758 -154262774 - AluSx SINE Alu -15 297 1 994 208 41 143 chr5 48822758 48822964 -154262568 - L1ME3A LINE L1 -459 5711 5486 2188 89 7 0 chr5 48822975 48823255 -154262277 - AluSp SINE Alu -29 284 3 278 170 21 0 chr5 48823816 48823863 -154261669 - L2 LINE L2 -4 3309 3262 2484 83 0 0 chr5 48824158 48824458 -154261074 + AluSg SINE Alu 1 300 -10 2193 117 0 3 chr5 48824646 48824946 -154260586 - AluSg SINE Alu -11 299 1 556 29 0 0 chr5 48824976 48825045 -154260487 + AluY SINE Alu 240 308 -4 243 0 0 0 chr5 48825116 48825143 -154260389 + (A)n Simple_repeat Simple_repeat 1 27 0 449 98 0 0 chr5 48825368 48825429 -154260103 + Alu SINE Alu 2 62 -251 * 636 116 0 12 chr5 48825426 48825512 -154260020 + AluSg/x SINE Alu 107 191 -121 1459 92 0 5 chr5 48825515 48825699 -154259833 + AluSp SINE Alu 107 289 -24 741 117 25 17 chr5 48825703 48825823 -154259709 - MLT1E3 LTR MaLR -425 199 79 963 144 144 59 chr5 48825922 48826124 -154259408 + MER20 DNA MER1_type 1 219 0 3849 130 60 0 chr5 48826235 48826804 -154258728 - LTR26 LTR ERV1 0 603 1 2065 147 0 3 chr5 48826866 48827178 -154258354 + AluSx SINE Alu 1 311 -1 2905 6 0 0 chr5 48827378 48827689 -154257843 - AluYa5 SINE Alu 0 311 1 1928 144 3 30 chr5 48827718 48828016 -154257516 + AluJo SINE Alu 1 290 -22 237 341 11 22 chr5 48828057 48828148 -154257384 + HAL1 LINE L1 2414 2503 -4 2328 100 3 3 chr5 48828338 48828647 -154256885 + AluSc SINE Alu 1 309 0 26 30 0 0 chr5 48829034 48829067 -154256465 + AT_rich Low_complexity Low_complexity 1 33 0 440 242 68 8 chr5 48829067 48829199 -154256333 + MIR SINE MIR 57 196 -66 2113 128 0 3 chr5 48829495 48829807 -154255725 + AluSx SINE Alu 1 311 -1 1835 128 6 47 chr5 48830176 48830496 -154255036 + AluJo SINE Alu 1 307 -5 605 231 65 123 chr5 48830496 48830976 -154254556 + L1MC4 LINE L1 7591 8042 0 1530 172 82 8 chr5 48831049 48831317 -154254215 - AluJo SINE Alu -24 288 1 231 207 11 23 chr5 48831948 48832035 -154253497 + GA-rich Low_complexity Low_complexity 2 87 0 2262 122 3 0 chr5 48832464 48832775 -154252757 - AluSq SINE Alu -1 312 1 243 0 0 0 chr5 48833332 48833359 -154252173 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2123 122 3 10 chr5 48833462 48833766 -154251766 + AluSq SINE Alu 1 302 -11 2442 38 35 3 chr5 48834565 48834853 -154250679 - AluY SINE Alu -14 297 1 370 253 13 0 chr5 48836568 48836647 -154248885 + L2 LINE L2 3226 3305 -8 291 349 63 0 chr5 48836887 48837028 -154248504 + MIR SINE MIR 37 184 -58 1867 148 14 0 chr5 48837298 48837582 -154247950 - AluJb SINE Alu -24 288 1 375 262 115 8 chr5 48838467 48838589 -154246943 - L2 LINE L2 -2 3270 3136 1585 127 26 85 chr5 48838648 48838955 -154246577 + L1MB7 LINE L1 5866 6154 -30 246 269 67 10 chr5 48841177 48841303 -154244229 - L1MC4 LINE L1 -1 8041 5959 225 228 0 53 chr5 48841295 48841352 -154244180 - L1MC4 LINE L1 -2065 5743 5690 * 646 300 22 31 chr5 48841352 48841579 -154243953 - MIR SINE MIR 0 262 38 602 178 156 106 chr5 48841657 48841761 -154243771 - MER5A DNA MER1_type 0 189 70 2057 130 0 0 chr5 48841761 48842071 -154243461 - AluSx SINE Alu 0 310 1 602 178 156 106 chr5 48842071 48842145 -154243387 - MER5A DNA MER1_type -119 70 1 741 255 79 41 chr5 48842168 48842440 -154243092 - L1MC4 LINE L1 -530 5634 5352 22 0 0 0 chr5 48842462 48842484 -154243048 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr5 48842634 48842669 -154242863 + AT_rich Low_complexity Low_complexity 1 35 0 703 173 0 31 chr5 48842864 48842991 -154242541 - FLAM_C SINE Alu -10 123 1 2395 97 3 0 chr5 48843001 48843309 -154242223 - AluSq SINE Alu -4 309 1 869 283 96 22 chr5 48843785 48844340 -154241192 - L1MC4 LINE L1 -1293 4853 4258 593 303 89 7 chr5 48844516 48844820 -154240712 - L1MC4 LINE L1 -2322 3824 3496 236 91 23 0 chr5 48844847 48844891 -154240641 + (TA)n Simple_repeat Simple_repeat 2 46 0 1523 138 102 25 chr5 48845049 48845273 -154240259 + AluJo SINE Alu 1 251 -61 3982 81 38 40 chr5 48845273 48845510 -154240022 - MER41A LTR ERV1 -1 553 317 2491 48 3 32 chr5 48845510 48845824 -154239708 - AluY SINE Alu -6 305 1 3982 81 38 40 chr5 48845824 48846140 -154239392 - MER41A LTR ERV1 -237 317 1 1523 138 102 25 chr5 48846140 48846190 -154239342 + AluJo SINE Alu 251 296 -16 266 50 25 0 chr5 48846406 48846446 -154239086 + (GAAA)n Simple_repeat Simple_repeat 4 44 0 810 170 23 23 chr5 48847159 48847330 -154238202 + MER96B DNA MER1_type? 24 194 -223 266 345 36 27 chr5 48847744 48847854 -154237678 - L2 LINE L2 -8 3264 3154 1043 188 5 40 chr5 48847869 48848092 -154237440 - AluJo SINE Alu -10 302 88 205 332 195 25 chr5 48848116 48848224 -154237308 + L2 LINE L2 1945 2033 -1281 2254 100 0 7 chr5 48848224 48848523 -154237009 + AluSg1 SINE Alu 1 297 -12 205 332 195 25 chr5 48848523 48849023 -154236509 + L2 LINE L2 2033 2657 -657 1848 168 7 3 chr5 48849496 48849800 -154235732 - AluJo SINE Alu -7 305 1 752 163 8 8 chr5 48850009 48850138 -154235394 - FLAM_C SINE Alu -3 130 2 332 213 0 0 chr5 48850226 48850287 -154235245 + MER5A DNA MER1_type 9 69 -120 2367 94 3 3 chr5 48850457 48850766 -154234766 + AluSg SINE Alu 1 309 -1 741 240 134 0 chr5 48851103 48851320 -154234212 + MIR SINE MIR 5 250 -12 224 203 0 125 chr5 48851343 48851407 -154234125 + L2 LINE L2 3208 3263 -9 927 194 131 9 chr5 48851407 48851629 -154233903 + LTR41 LTR ERVL 1 249 -524 805 218 254 51 chr5 48851654 48851989 -154233543 + LTR41 LTR ERVL 360 762 -11 41393 67 8 2 chr5 48852203 48858309 -154227223 + L1PA5 LINE L1 11 6150 -4 22 35 0 0 chr5 48858428 48858457 -154227075 + AT_rich Low_complexity Low_complexity 1 29 0 984 118 6 37 chr5 48858535 48858696 -154226836 - AluJo/FRAM SINE Alu -1 311 156 696 128 27 149 chr5 48858699 48858807 -154226725 + AluJo SINE Alu 43 130 -182 2327 99 0 7 chr5 48858807 48859111 -154226421 + AluSq SINE Alu 3 304 -9 696 128 27 149 chr5 48859111 48859150 -154226382 + AluJo SINE Alu 130 172 -140 322 196 76 22 chr5 48860715 48860807 -154224725 - Charlie8 DNA MER1_type -2199 218 122 241 143 54 0 chr5 48861144 48861200 -154224332 + CT-rich Low_complexity Low_complexity 1 59 0 916 176 0 91 chr5 48861204 48861391 -154224141 - FAM SINE Alu -5 170 1 379 252 44 69 chr5 48862257 48862416 -154223116 + MER5A DNA MER1_type 35 189 0 241 338 79 21 chr5 48862678 48862819 -154222713 + MIR3 SINE MIR 8 173 -35 1375 178 12 4 chr5 48862839 48863097 -154222435 + MER33 DNA MER1_type 1 260 -64 965 220 45 89 chr5 48863100 48863442 -154222090 + MLT1A1 LTR MaLR 1 326 -39 557 114 23 0 chr5 48863442 48863530 -154222002 + MER21A LTR ERV1 1 90 -841 352 94 0 0 chr5 48863532 48863585 -154221947 - Alu SINE Alu -2 300 248 817 100 0 18 chr5 48863585 48863695 -154221837 - AluSg1 SINE Alu -201 108 1 3736 135 74 135 chr5 48863695 48864111 -154221421 + MER21A LTR ERV1 71 511 -420 533 149 0 0 chr5 48864111 48864185 -154221347 - AluJ/FLAM SINE Alu -237 75 2 3736 135 74 135 chr5 48864185 48864266 -154221266 + MER21A LTR ERV1 511 595 -336 7882 100 8 26 chr5 48864266 48865356 -154220176 + MER11C LTR ERVK 1 1071 0 3736 135 74 135 chr5 48865356 48865701 -154219831 + MER21A LTR ERV1 595 931 0 274 108 0 0 chr5 48865703 48865740 -154219792 + MLT1A1 LTR MaLR 360 396 0 1434 188 8 16 chr5 48866149 48866399 -154219133 + AluJo SINE Alu 1 248 -64 201 121 0 0 chr5 48867536 48867569 -154217963 + (TA)n Simple_repeat Simple_repeat 2 34 0 2063 134 0 0 chr5 48867573 48867864 -154217668 - AluSq SINE Alu -22 291 1 228 235 130 31 chr5 48868113 48868275 -154217257 - L1ME4a LINE L1 -2 6119 5942 415 286 10 20 chr5 48868299 48868397 -154217135 - L2 LINE L2 -30 3242 3146 2062 118 21 0 chr5 48868506 48868795 -154216737 - AluSx SINE Alu -17 295 1 289 284 34 89 chr5 48868825 48868902 -154216630 - L1ME4a LINE L1 -317 5804 5724 1807 171 3 3 chr5 48868902 48869194 -154216338 - AluJb SINE Alu -20 292 1 289 284 34 89 chr5 48869194 48869352 -154216180 - L1ME4a LINE L1 -397 5724 5582 295 271 65 19 chr5 48869752 48869859 -154215673 - MER91A DNA MER1_type -84 112 1 233 264 32 52 chr5 48870504 48870659 -154214873 - L1MC/D LINE L1 -1925 5883 5732 2237 115 0 0 chr5 48870770 48871065 -154214467 - AluSg SINE Alu -15 295 1 1773 168 7 3 chr5 48871085 48871383 -154214149 + AluJb SINE Alu 1 299 -13 257 182 91 52 chr5 48871383 48871460 -154214072 - L1MC/D LINE L1 -477 5644 5565 275 270 63 0 chr5 48871521 48871584 -154213948 + L2 LINE L2 3204 3270 -2 200 194 56 0 chr5 48872228 48872264 -154213268 - MIR SINE MIR -139 123 86 346 304 180 55 chr5 48872338 48872848 -154212684 + L1MC4a LINE L1 4692 5265 -881 2142 98 11 0 chr5 48872905 48873190 -154212342 + AluSx SINE Alu 1 288 -24 28 0 0 0 chr5 48873190 48873218 -154212314 + AT_rich Low_complexity Low_complexity 1 28 0 985 271 128 25 chr5 48873218 48873705 -154211827 + L1MC4a LINE L1 5315 5863 -1945 2314 86 7 10 chr5 48873705 48874006 -154211526 + AluSq SINE Alu 1 300 -13 985 271 128 25 chr5 48874006 48874049 -154211483 + L1MC4a LINE L1 5863 5900 -1908 2112 97 50 0 chr5 48874172 48874450 -154211082 - AluSx SINE Alu -20 292 1 1965 220 222 2 chr5 48874564 48875100 -154210432 - MLT1E1 LTR MaLR 0 654 1 828 252 117 5 chr5 48875147 48875369 -154210163 - MIR SINE MIR -10 252 6 1228 159 5 10 chr5 48875415 48875623 -154209909 + AluJb SINE Alu 85 291 -21 1641 233 128 39 chr5 48875636 48876152 -154209380 - MLT1G1 LTR MaLR -2 593 32 2453 128 27 3 chr5 48876365 48876694 -154208838 - MER1B DNA MER1_type 0 337 1 267 254 0 0 chr5 48876890 48876949 -154208583 - L2 LINE L2 0 3313 3255 21 0 0 0 chr5 48877320 48877341 -154208191 + AT_rich Low_complexity Low_complexity 1 21 0 521 267 89 0 chr5 48877345 48877480 -154208052 + MER119 DNA MER1_type 3 149 -434 * 567 178 37 44 chr5 48877461 48877503 -154208029 + MER119 DNA MER1_type 449 490 -93 2297 112 0 0 chr5 48877503 48877807 -154207725 + AluSx SINE Alu 1 304 -8 567 178 37 44 chr5 48877807 48877899 -154207633 + MER119 DNA MER1_type 490 582 -1 190 244 183 0 chr5 48878786 48878868 -154206664 - L2 LINE L2 -336 2977 2881 1951 114 16 54 chr5 48879008 48879325 -154206207 - AluSx SINE Alu -7 305 1 500 325 108 35 chr5 48879526 48880054 -154205478 + L2 LINE L2 2709 3264 -8 2260 105 7 0 chr5 48880136 48880432 -154205100 - AluSx SINE Alu -14 298 1 211 258 247 10 chr5 48880658 48880755 -154204777 - MIR3 SINE MIR -7 201 82 793 239 129 32 chr5 48880904 48881179 -154204353 + MLT1D LTR MaLR 13 314 -312 1134 191 194 50 chr5 48881179 48881222 -154204310 - MLT1A1 LTR MaLR 0 365 330 2217 99 7 7 chr5 48881222 48881524 -154204008 + AluSq SINE Alu 1 302 -11 1134 191 194 50 chr5 48881524 48881799 -154203733 - MLT1A1 LTR MaLR -35 330 1 1168 202 5 0 chr5 48881799 48882007 -154203525 + MLT1D LTR MaLR 296 504 -1 528 281 128 42 chr5 48883345 48883985 -154201547 - L1ME4a LINE L1 -13 6108 5414 1959 121 3 67 chr5 48884085 48884416 -154201116 - AluSq SINE Alu -3 310 1 1971 110 21 11 chr5 48884741 48885067 -154200465 - AluSq SINE Alu 0 329 1 762 151 71 24 chr5 48886090 48886216 -154199316 + AluJ SINE Alu 2 133 -169 1071 180 10 35 chr5 48886234 48886434 -154199098 + AluJ SINE Alu 118 312 0 2319 95 7 3 chr5 48886441 48886747 -154198785 + AluY SINE Alu 1 307 -4 788 233 74 6 chr5 48887489 48887665 -154197867 + MER5A DNA MER1_type 2 189 0 1977 113 49 3 chr5 48888152 48888458 -154197074 + AluSx SINE Alu 1 312 0 41807 65 7 6 chr5 48888489 48894625 -154190907 - L1PA5 LINE L1 -1 6153 11 805 218 254 51 chr5 48894839 48895174 -154190358 - LTR41 LTR ERVL -11 762 360 927 194 131 9 chr5 48895199 48895421 -154190111 - LTR41 LTR ERVL -524 249 1 224 203 0 125 chr5 48895421 48895485 -154190047 - L2 LINE L2 -9 3263 3208 741 240 134 0 chr5 48895508 48895725 -154189807 - MIR SINE MIR -12 250 5 2367 94 3 3 chr5 48896062 48896371 -154189161 - AluSg SINE Alu -1 309 1 332 213 0 0 chr5 48896541 48896602 -154188930 - MER5A DNA MER1_type -120 69 9 785 163 23 0 chr5 48896690 48896819 -154188713 + BC200 scRNA scRNA 2 133 -67 1868 174 3 3 chr5 48897028 48897333 -154188199 + AluJo SINE Alu 1 305 -7 205 332 195 25 chr5 48897806 48898306 -154187226 - L2 LINE L2 -657 2657 2033 2254 100 0 7 chr5 48898306 48898605 -154186927 - AluSg1 SINE Alu -12 297 1 205 332 195 25 chr5 48898605 48898713 -154186819 - L2 LINE L2 -1281 2033 1945 1043 188 5 40 chr5 48898737 48898960 -154186572 + AluJo SINE Alu 88 302 -10 266 345 36 27 chr5 48898975 48899085 -154186447 + L2 LINE L2 3154 3264 -8 810 170 23 23 chr5 48899499 48899670 -154185862 - MER96B DNA MER1_type? -223 194 24 266 50 25 0 chr5 48900383 48900423 -154185109 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 1523 138 102 25 chr5 48900639 48900689 -154184843 - AluJo SINE Alu -16 296 251 3982 81 38 40 chr5 48900689 48901005 -154184527 + MER41A LTR ERV1 1 317 -237 2491 48 3 32 chr5 48901005 48901319 -154184213 + AluY SINE Alu 1 305 -6 3982 81 38 40 chr5 48901319 48901556 -154183976 + MER41A LTR ERV1 317 553 -1 1523 138 102 25 chr5 48901556 48901780 -154183752 - AluJo SINE Alu -61 251 1 236 91 23 0 chr5 48901938 48901982 -154183550 + (TA)n Simple_repeat Simple_repeat 2 46 0 593 303 89 7 chr5 48902009 48902313 -154183219 + L1MC4 LINE L1 3496 3824 -2322 869 283 96 22 chr5 48902489 48903044 -154182488 + L1MC4 LINE L1 4258 4853 -1293 2395 97 3 0 chr5 48903520 48903828 -154181704 + AluSq SINE Alu 1 309 -4 703 173 0 31 chr5 48903838 48903965 -154181567 + FLAM_C SINE Alu 1 123 -10 21 57 0 0 chr5 48904160 48904195 -154181337 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr5 48904345 48904367 -154181165 + AT_rich Low_complexity Low_complexity 1 22 0 741 255 79 41 chr5 48904389 48904661 -154180871 + L1MC4 LINE L1 5352 5634 -530 602 178 156 106 chr5 48904684 48904758 -154180774 + MER5A DNA MER1_type 1 70 -119 2058 130 0 0 chr5 48904758 48905068 -154180464 + AluSx SINE Alu 1 310 0 602 178 156 106 chr5 48905068 48905172 -154180360 + MER5A DNA MER1_type 70 189 0 646 300 22 31 chr5 48905250 48905477 -154180055 + MIR SINE MIR 38 262 0 225 228 0 53 chr5 48905477 48905534 -154179998 + L1MC4 LINE L1 5690 5743 -2065 * 246 269 67 10 chr5 48905526 48905652 -154179880 + L1MC4 LINE L1 5959 8041 -1 1585 127 26 85 chr5 48907875 48908182 -154177350 - L1MB7 LINE L1 -30 6154 5866 375 262 115 8 chr5 48908241 48908363 -154177169 + L2 LINE L2 3136 3270 -2 1867 148 14 0 chr5 48909249 48909533 -154175999 + AluJb SINE Alu 1 288 -24 291 349 63 0 chr5 48909803 48909944 -154175588 - MIR SINE MIR -58 150 37 370 253 13 0 chr5 48910184 48910263 -154175269 - L2 LINE L2 -8 3305 3226 2442 38 35 3 chr5 48911978 48912266 -154173266 + AluY SINE Alu 1 297 -14 2168 121 0 10 chr5 48913065 48913370 -154172162 - AluSq SINE Alu -11 302 1 243 0 0 0 chr5 48913473 48913500 -154172032 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2262 122 3 0 chr5 48914057 48914368 -154171164 + AluSq SINE Alu 1 312 -1 231 207 11 23 chr5 48914797 48914884 -154170648 + CT-rich Low_complexity Low_complexity 2 87 0 1530 172 82 8 chr5 48915515 48915783 -154169749 + AluJo SINE Alu 1 288 -24 605 231 65 123 chr5 48915856 48916336 -154169196 - L1MC4 LINE L1 0 8042 7591 1835 128 6 47 chr5 48916336 48916656 -154168876 - AluJo SINE Alu -5 307 1 2113 128 0 3 chr5 48917025 48917337 -154168195 - AluSx SINE Alu -1 311 1 440 242 68 8 chr5 48917633 48917765 -154167767 - MIR SINE MIR -66 196 57 26 30 0 0 chr5 48917765 48917798 -154167734 + AT_rich Low_complexity Low_complexity 1 33 0 2328 100 3 3 chr5 48918185 48918494 -154167038 - AluSc SINE Alu 0 309 1 237 341 11 22 chr5 48918684 48918775 -154166757 - HAL1 LINE L1 -4 2503 2414 1928 144 3 30 chr5 48918816 48919114 -154166418 - AluJo SINE Alu -22 290 1 2905 6 0 0 chr5 48919143 48919454 -154166078 + AluYa5 SINE Alu 1 311 0 2065 147 0 3 chr5 48919654 48919966 -154165566 - AluSx SINE Alu -1 311 1 3849 130 60 0 chr5 48920028 48920597 -154164935 + LTR26 LTR ERV1 1 603 0 963 144 144 59 chr5 48920708 48920910 -154164622 - MER20 DNA MER1_type 0 219 1 741 117 25 17 chr5 48921009 48921129 -154164403 + MLT1E3 LTR MaLR 79 199 -425 1459 92 0 5 chr5 48921133 48921317 -154164215 - AluSp SINE Alu -24 289 107 636 109 0 10 chr5 48921320 48921464 -154164068 - AluSp SINE Alu -122 191 2 243 0 0 0 chr5 48921689 48921716 -154163816 + (T)n Simple_repeat Simple_repeat 1 27 0 556 29 0 0 chr5 48921787 48921856 -154163676 - AluY SINE Alu -4 305 237 2193 117 0 3 chr5 48921886 48922186 -154163346 + AluSg SINE Alu 1 299 -11 2484 83 0 0 chr5 48922374 48922674 -154162858 - AluSg SINE Alu -10 300 1 278 170 21 0 chr5 48922969 48923016 -154162516 + L2 LINE L2 3262 3309 -4 2188 89 7 0 chr5 48923577 48923857 -154161675 + AluSp SINE Alu 3 284 -29 994 208 41 143 chr5 48923868 48924074 -154161458 + L1ME3A LINE L1 5486 5711 -459 2160 120 0 7 chr5 48924074 48924373 -154161159 + AluSx SINE Alu 1 297 -15 994 208 41 143 chr5 48924373 48924506 -154161026 + L1ME3A LINE L1 5711 5768 -402 2100 151 0 0 chr5 48924506 48924817 -154160715 + AluSx SINE Alu 1 311 -1 994 208 41 143 chr5 48924817 48924938 -154160594 + L1ME3A LINE L1 5768 5900 -270 2293 168 61 7 chr5 48924952 48925362 -154160170 + MSTB1 LTR MaLR 1 432 0 2193 203 82 22 chr5 48925362 48925859 -154159673 - MLT1F LTR MaLR -7 535 9 696 221 25 0 chr5 48925878 48926036 -154159496 + L1ME3A LINE L1 5915 6076 -94 243 217 0 33 chr5 48926106 48926143 -154159389 + GA-rich Low_complexity Low_complexity 3 39 -21 2153 130 3 0 chr5 48926143 48926450 -154159082 + AluSq SINE Alu 1 308 -5 243 217 0 33 chr5 48926450 48926472 -154159060 + GA-rich Low_complexity Low_complexity 39 60 0 841 230 100 81 chr5 48926934 48927432 -154158100 - MLT1H1 LTR MaLR -8 547 1 2019 119 13 22 chr5 48927457 48927768 -154157764 + AluSx SINE Alu 1 308 -4 721 216 64 19 chr5 48927911 48928086 -154157446 + MLT1E LTR MaLR 3 184 -409 555 56 0 0 chr5 48928098 48928169 -154157363 + (TC)n Simple_repeat Simple_repeat 2 72 0 1954 155 174 27 chr5 48928221 48928628 -154156904 - MLT1C LTR MaLR 0 467 1 720 260 41 37 chr5 48928646 48928888 -154156644 - MLT1J LTR MaLR -268 243 1 391 319 57 32 chr5 48928995 48929152 -154156380 - MIR SINE MIR -75 187 27 1213 144 5 0 chr5 48929353 48929541 -154155991 + L1P3 LINE L1 2 190 -6271 * 11902 104 56 63 chr5 48929521 48931882 -154153650 + L1P3 LINE L1 36 2520 -3941 2142 135 0 0 chr5 48931882 48932178 -154153354 + AluSc SINE Alu 3 298 -11 11902 104 56 63 chr5 48932178 48932568 -154152964 + L1P3 LINE L1 2520 2911 -3550 591 149 28 0 chr5 48932683 48932790 -154152742 - L1MA6 LINE L1 -1 6299 6190 218 192 19 0 chr5 48932825 48932877 -154152655 + (CA)n Simple_repeat Simple_repeat 2 54 0 443 77 15 0 chr5 48933004 48933069 -154152463 + MER41B LTR ERV1 483 548 -87 377 295 38 0 chr5 48933803 48933908 -154151624 + L2 LINE L2 3190 3298 -15 24 32 0 0 chr5 48934700 48934731 -154150801 + AT_rich Low_complexity Low_complexity 1 31 0 3548 167 17 11 chr5 48934750 48935469 -154150063 + L1P LINE L1 4207 4929 -1217 672 229 0 66 chr5 48935592 48935775 -154149757 + LTR8A LTR ERV1 557 727 0 5595 220 13 9 chr5 48935775 48937220 -154148312 + L1 LINE L1 2396 3846 -2300 4649 140 25 0 chr5 48937221 48937985 -154147547 + L1P LINE L1 1 783 -5363 21115 51 12 13 chr5 48938087 48941006 -154144526 - L1P LINE L1 -1598 4548 1632 1948 154 3 59 chr5 48941366 48941722 -154143810 + MER1B DNA MER1_type 2 337 0 2135 118 10 0 chr5 48941886 48942190 -154143342 - AluSx SINE Alu -5 307 1 25 31 0 0 chr5 48942217 48942249 -154143283 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr5 48944319 48944349 -154141183 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr5 48944651 48944673 -154140859 + AT_rich Low_complexity Low_complexity 1 22 0 2195 108 10 0 chr5 48944709 48945004 -154140528 - AluSx SINE Alu -13 299 2 2175 112 3 0 chr5 48946110 48946397 -154139135 + AluSp SINE Alu 1 288 -25 1177 164 0 0 chr5 48946727 48946904 -154138628 + AluSg/x SINE Alu 124 300 -12 631 317 84 28 chr5 48946921 48947277 -154138255 + HAL1b LINE L1 60 435 -913 1814 155 16 16 chr5 48947602 48947906 -154137626 - AluJo SINE Alu -8 304 1 719 260 105 0 chr5 48948094 48948294 -154137238 - MIR SINE MIR -34 228 8 1956 101 50 22 chr5 48948432 48948741 -154136791 - AluSq SINE Alu 0 317 1 409 284 135 18 chr5 48948741 48948868 -154136664 - MIR SINE MIR -12 250 139 5210 109 23 45 chr5 48948868 48949408 -154136124 + L1PB4 LINE L1 5137 5654 -502 2048 153 0 10 chr5 48949408 48949721 -154135811 + AluJb SINE Alu 2 311 -1 5210 109 23 45 chr5 48949721 48950213 -154135319 + L1PB4 LINE L1 5654 6156 0 409 284 135 18 chr5 48950213 48950307 -154135225 - MIR SINE MIR -123 139 3 454 171 133 19 chr5 48950442 48950547 -154134985 - L2 LINE L2 -2 3311 3195 198 0 0 0 chr5 48951823 48951845 -154133687 + (T)n Simple_repeat Simple_repeat 1 22 0 270 337 22 0 chr5 48952058 48952147 -154133385 + MLT1K LTR MaLR 159 249 -339 2342 207 67 34 chr5 48952652 48952756 -154132776 + L1ME1 LINE L1 4657 4756 -1410 1994 141 10 0 chr5 48952756 48953047 -154132485 + AluJo SINE Alu 1 294 -18 2342 207 67 34 chr5 48953047 48953153 -154132379 + L1ME1 LINE L1 4756 4857 -1309 2219 112 3 19 chr5 48953153 48953467 -154132065 - AluSx SINE Alu -3 309 1 1089 214 103 53 chr5 48953469 48953750 -154131782 - AluJb SINE Alu -7 295 1 2342 207 67 34 chr5 48953750 48954725 -154130807 + L1ME1 LINE L1 4857 5894 -272 1034 176 31 39 chr5 48954725 48954960 -154130572 + L1MC2 LINE L1 6082 6316 -28 2013 138 165 5 chr5 48954960 48955329 -154130203 - MSTA LTR MaLR 0 428 1 1034 176 31 39 chr5 48955329 48955349 -154130183 + L1MC2 LINE L1 6316 6335 -9 26 0 0 0 chr5 48955381 48955407 -154130125 + AT_rich Low_complexity Low_complexity 1 26 0 931 179 6 12 chr5 48955518 48955691 -154129841 - AluJb SINE Alu -18 294 123 1920 155 0 10 chr5 48955712 48956016 -154129516 - AluJb SINE Alu -11 301 1 681 262 29 44 chr5 48956032 48956307 -154129225 + L1ME1 LINE L1 5891 6161 -5 341 300 45 41 chr5 48956964 48957244 -154128288 + L1MEc LINE L1 2113 2435 -3807 26 0 0 0 chr5 48957344 48957370 -154128162 + AT_rich Low_complexity Low_complexity 1 26 0 3517 127 11 0 chr5 48957404 48957925 -154127607 - MER1A DNA MER1_type 0 527 1 12900 168 41 14 chr5 48957994 48960439 -154125093 + L1MA1 LINE L1 14 2525 -5040 650 50 119 0 chr5 48960439 48960599 -154124933 + L1P LINE L1 3029 3207 -2939 236 146 0 0 chr5 48960699 48960740 -154124792 + L1MA1 LINE L1 2485 2525 -5040 19315 32 11 10 chr5 48960740 48963879 -154121653 + L1PA4 LINE L1 3028 6152 -3 4951 152 119 13 chr5 48963884 48964780 -154120752 + L1MA1 LINE L1 2441 3549 -4016 1737 183 0 49 chr5 48964780 48965108 -154120424 + AluSx SINE Alu 1 312 0 4951 152 119 13 chr5 48965108 48965647 -154119885 + L1MA1 LINE L1 3549 4030 -3535 248 111 22 22 chr5 48965673 48965718 -154119814 + MER4A LTR ERV1 54 98 -566 1216 157 7 62 chr5 48965718 48965909 -154119623 + MER4A LTR ERV1 262 490 -174 4273 53 7 18 chr5 48965909 48966473 -154119059 - LTR6B LTR ERV1 0 558 1 1216 157 7 62 chr5 48966473 48966583 -154118949 + MER4A LTR ERV1 490 605 -59 2503 202 40 0 chr5 48966683 48967276 -154118256 + L1MA1 LINE L1 4028 4644 -2921 * 5891 171 8 40 chr5 48967263 48967637 -154117895 + L1MA1 LINE L1 5082 5466 -2255 4529 107 7 19 chr5 48967637 48968117 -154117415 + MER4A LTR ERV1 1 472 -192 2022 155 3 7 chr5 48968117 48968421 -154117111 - AluSx SINE Alu -9 303 1 4529 107 7 19 chr5 48968421 48968612 -154116920 + MER4A LTR ERV1 472 664 0 5891 171 8 40 chr5 48968612 48970837 -154114695 + L1MA1 LINE L1 5466 7477 -244 2326 103 0 0 chr5 48970837 48971147 -154114385 + AluSg SINE Alu 1 310 0 5891 171 8 40 chr5 48971147 48971217 -154114315 + L1MA1 LINE L1 7477 7548 -173 * 8301 65 36 9 chr5 48971214 48972459 -154113073 + L1PA7 LINE L1 4110 5427 -727 2391 94 7 0 chr5 48972459 48972767 -154112765 + AluSp SINE Alu 2 311 -2 8301 65 36 9 chr5 48972767 48973514 -154112018 + L1PA7 LINE L1 5427 6152 -2 1136 268 155 32 chr5 48973891 48974477 -154111055 + MLT2F LTR ERVL 6 663 0 261 0 0 0 chr5 48974488 48974517 -154111015 + (T)n Simple_repeat Simple_repeat 1 29 0 296 230 0 20 chr5 48974547 48974647 -154110885 + L1ME4a LINE L1 4561 4658 -1488 27 0 0 0 chr5 48974860 48974887 -154110645 + AT_rich Low_complexity Low_complexity 1 27 0 1570 196 19 19 chr5 48974889 48975200 -154110332 + AluJo SINE Alu 1 311 -1 2303 72 10 23 chr5 48975286 48975592 -154109940 + AluSg SINE Alu 1 302 -8 254 232 71 0 chr5 48975784 48975840 -154109692 - LTR67 LTR ERVL -385 172 113 426 183 0 12 chr5 48975939 48976021 -154109511 + Tigger5 DNA MER2_type 2243 2323 0 657 293 126 19 chr5 48976626 48977254 -154108278 + L1ME4a LINE L1 5257 5951 -170 21 0 0 0 chr5 48977495 48977516 -154108016 + AT_rich Low_complexity Low_complexity 1 21 0 1787 162 3 32 chr5 48978292 48978601 -154106931 - AluJo SINE Alu -12 300 1 2604 42 0 7 chr5 48978776 48979082 -154106450 - AluY SINE Alu -7 304 1 1623 166 52 28 chr5 48979085 48979375 -154106157 - AluJo SINE Alu -10 302 6 879 124 87 62 chr5 48979669 48979814 -154105718 + MLT1F LTR MaLR 325 531 -64 2349 68 0 3 chr5 48979814 48980121 -154105411 - AluY SINE Alu -5 306 1 879 124 87 62 chr5 48980121 48980186 -154105346 + MLT1F LTR MaLR 531 593 -2 1975 140 16 3 chr5 48983207 48983515 -154102017 - AluJo SINE Alu 0 312 1 315 261 185 27 chr5 48983566 48983750 -154101782 - L2 LINE L2 -105 3208 2996 1823 171 0 16 chr5 48984263 48984579 -154100953 + AluJo SINE Alu 1 311 -1 26 50 0 0 chr5 48984697 48984737 -154100795 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr5 48985597 48985620 -154099912 + AT_rich Low_complexity Low_complexity 1 23 0 3083 117 11 2 chr5 49037801 49038237 -154047295 + MER41C-int LTR ERV1 7317 7756 0 3333 152 49 9 chr5 49038237 49038557 -154046975 + MER41C LTR ERV1 1 352 -202 207 0 0 0 chr5 49038557 49038580 -154046952 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3333 152 49 9 chr5 49038580 49038792 -154046740 + MER41C LTR ERV1 352 554 0 14594 164 111 107 chr5 49038797 49041307 -154044225 - LTR49-int LTR ERV1 -87 6244 3747 1864 183 3 10 chr5 49041307 49041619 -154043913 - AluJb SINE Alu -2 310 1 14594 164 111 107 chr5 49041619 49042023 -154043509 - LTR49-int LTR ERV1 -2584 3747 3346 2235 114 0 7 chr5 49042023 49042322 -154043210 - AluSq SINE Alu -16 297 1 14594 164 111 107 chr5 49042322 49042560 -154042972 - LTR49-int LTR ERV1 -2985 3346 3111 2447 167 23 46 chr5 49042560 49042845 -154042687 + MSTB LTR MaLR 1 274 -152 2150 141 0 3 chr5 49042845 49043158 -154042374 - AluSx SINE Alu 0 312 1 2447 167 23 46 chr5 49043158 49043308 -154042224 + MSTB LTR MaLR 274 426 0 14594 164 111 107 chr5 49043308 49043409 -154042123 - LTR49-int LTR ERV1 -3220 3111 3012 1176 154 4 68 chr5 49043409 49043612 -154041920 + AluJb SINE Alu 87 275 -37 2218 155 119 18 chr5 49043612 49043999 -154041533 + MSTB LTR MaLR 1 426 0 1176 154 4 68 chr5 49043999 49044029 -154041503 + AluJb SINE Alu 275 305 -7 14594 164 111 107 chr5 49044029 49044866 -154040666 - LTR49-int LTR ERV1 -3319 3012 1895 10276 30 21 129 chr5 49044866 49046438 -154039094 - SVA Other Other 0 1386 17 14594 164 111 107 chr5 49046438 49046665 -154038867 - LTR49-int LTR ERV1 -4436 1895 1670 372 158 45 0 chr5 49046679 49046812 -154038720 + (TA)n Simple_repeat Simple_repeat 1 139 0 181 134 21 52 chr5 49046791 49046888 -154038644 + (TTATA)n Simple_repeat Simple_repeat 1 94 0 * 342 153 53 0 chr5 49046892 49047049 -154038483 + (TA)n Simple_repeat Simple_repeat 2 170 -10 191 35 0 35 chr5 49047049 49047078 -154038454 + (TATAA)n Simple_repeat Simple_repeat 3 30 0 342 153 53 0 chr5 49047078 49047090 -154038442 + (TA)n Simple_repeat Simple_repeat 170 180 0 1165 190 146 12 chr5 49047091 49047379 -154038153 - LTR49-int LTR ERV1 -4665 1666 998 541 134 0 36 chr5 49047493 49047605 -154037927 - LTR49-int LTR ERV1 -4941 1390 1283 370 258 0 0 chr5 49047605 49047671 -154037861 - tRNA-Glu-GAG tRNA tRNA 0 75 10 892 147 71 61 chr5 49047674 49047728 -154037804 - LTR49-int LTR ERV1 -5118 1213 1161 7646 66 31 2 chr5 49047728 49048670 -154036862 + LTR5 LTR ERVK 1 969 0 892 147 71 61 chr5 49048670 49048812 -154036720 - LTR49-int LTR ERV1 -5170 1161 1015 * 2039 158 29 35 chr5 49048810 49049554 -154035978 - LTR49-int LTR ERV1 -4466 1480 1 809 156 4 1 chr5 49049556 49049699 -154035833 - LTR49 LTR ERV1 0 595 468 555 143 0 22 chr5 49049698 49049789 -154035743 + LTR49 LTR ERV1 505 593 -2 * 385 174 29 0 chr5 49049814 49049883 -154035649 - L2 LINE L2 -5 3308 3238 579 311 108 42 chr5 49049920 49050299 -154035233 - L2 LINE L2 -667 2647 2244 3416 135 67 23 chr5 49050570 49051185 -154034347 - MER39B LTR ERV1 -2 651 10 223 216 216 11 chr5 49051411 49051499 -154034033 - MIR SINE MIR 0 262 157 2007 195 23 66 chr5 49051517 49052004 -154033528 + MER41B LTR ERV1 134 599 -36 268 297 50 10 chr5 49052069 49052170 -154033362 + MER66-int LTR ERV1 400 504 -6172 2369 107 0 0 chr5 49052228 49052537 -154032995 - AluSg SINE Alu -1 309 1 653 227 30 129 chr5 49052555 49052920 -154032612 + MER66-int LTR ERV1 756 1084 -5592 2282 70 0 3 chr5 49053041 49053352 -154032180 + AluY SINE Alu 1 310 0 903 176 20 0 chr5 49053550 49053703 -154031829 + MER66-int LTR ERV1 1302 1457 -5219 2574 50 0 0 chr5 49055155 49055457 -154030075 + AluY SINE Alu 1 302 -9 2221 112 3 7 chr5 49055873 49056169 -154029363 - AluSx SINE Alu -17 295 1 1413 230 43 16 chr5 49056169 49056621 -154028911 + MER66-int LTR ERV1 2334 2836 -3840 988 176 17 116 chr5 49056677 49056979 -154028553 + MER41B LTR ERV1 340 611 -24 465 268 125 12 chr5 49056988 49057156 -154028376 - MIR SINE MIR -73 189 3 1715 176 7 7 chr5 49057893 49058183 -154027349 - AluSx SINE Alu -22 290 1 308 233 33 147 chr5 49058496 49058646 -154026886 - Tigger8 DNA MER2_type -488 178 46 1807 151 45 59 chr5 49058950 49059308 -154026224 + MLT1A1 LTR MaLR 13 365 0 241 330 75 0 chr5 49059352 49059458 -154026074 - L2 LINE L2 -192 3080 2967 300 326 62 51 chr5 49059611 49059724 -154025808 + MIR SINE MIR 28 145 -117 2074 93 55 14 chr5 49059724 49060014 -154025518 + AluSg SINE Alu 1 302 -8 300 326 62 51 chr5 49060014 49060078 -154025454 + MIR SINE MIR 145 207 -55 3276 256 37 86 chr5 49060887 49061213 -154024319 - L1MD1 LINE L1 0 6242 5902 1799 176 0 0 chr5 49061213 49061497 -154024035 + AluSx SINE Alu 1 284 -28 3276 256 37 86 chr5 49061497 49061986 -154023546 - L1MD1 LINE L1 -340 5902 5391 1969 147 3 23 chr5 49061986 49062293 -154023239 - AluJb SINE Alu -11 301 1 3276 256 37 86 chr5 49062293 49062623 -154022909 - L1MD1 LINE L1 -851 5391 5197 2217 96 4 0 chr5 49062623 49062942 -154022590 - AluSq SINE Alu 0 320 1 3276 256 37 86 chr5 49062942 49063275 -154022257 - L1MD1 LINE L1 -1045 5197 4849 186 302 86 35 chr5 49063275 49063391 -154022141 - MIR SINE MIR -12 250 129 301 277 24 12 chr5 49063456 49063539 -154021993 - L2 LINE L2 -2 3270 3187 241 389 98 16 chr5 49063545 49063738 -154021794 - L2 LINE L2 -224 3048 2840 459 228 16 24 chr5 49063743 49063870 -154021662 - L2 LINE L2 -969 2345 2220 1990 136 16 3 chr5 49063969 49064277 -154021255 + AluSx SINE Alu 1 312 0 3101 113 24 5 chr5 49064493 49064919 -154020613 + MER57B LTR ERV1 1 434 0 1770 184 37 56 chr5 49065233 49065682 -154019850 + MLT1C LTR MaLR 1 467 0 2114 100 17 23 chr5 49065736 49066035 -154019497 - AluSq SINE Alu -16 297 1 35 24 0 0 chr5 49066824 49066866 -154018666 + AT_rich Low_complexity Low_complexity 1 42 0 1066 191 91 0 chr5 49067381 49067580 -154017952 - MER20 DNA MER1_type 0 219 3 212 200 0 0 chr5 49070349 49070389 -154015143 - MIR SINE MIR -75 187 148 1498 181 7 4 chr5 49070401 49070672 -154014860 - AluJo SINE Alu -38 274 3 657 193 73 7 chr5 49070672 49070822 -154014710 - MIR SINE MIR -100 162 3 2988 3 0 0 chr5 49070938 49071255 -154014277 + AluYb8 SINE Alu 1 317 -1 265 247 198 25 chr5 49071712 49071874 -154013658 - MIR3 SINE MIR -3 205 16 1092 104 0 114 chr5 49072679 49072867 -154012665 - AluSc SINE Alu 0 309 144 2534 140 32 16 chr5 49072867 49073310 -154012222 + LTR7 LTR ERV1 1 450 0 1092 104 0 114 chr5 49073310 49073322 -154012210 - AluSc SINE Alu -165 144 132 740 148 98 16 chr5 49073322 49073444 -154012088 - FLAM_C SINE Alu -1 132 1 2229 117 0 0 chr5 49073632 49073932 -154011600 - AluSg SINE Alu -10 300 1 1177 278 120 5 chr5 49075159 49075551 -154009981 + L2 LINE L2 2396 2832 -482 198 0 0 0 chr5 49075621 49075643 -154009889 + (T)n Simple_repeat Simple_repeat 1 22 0 317 203 0 0 chr5 49075647 49075716 -154009816 - LTR30 LTR ERV1 -98 624 556 559 195 22 119 chr5 49075764 49075949 -154009583 - MLT1J LTR MaLR -327 184 18 366 107 0 0 chr5 49076478 49076534 -154008998 + (TCCC)n Simple_repeat Simple_repeat 3 58 0 300 161 103 11 chr5 49076565 49076652 -154008880 - L1MC5 LINE L1 -399 7562 7468 23 0 0 0 chr5 49077315 49077338 -154008194 + AT_rich Low_complexity Low_complexity 1 23 0 262 287 26 26 chr5 49077842 49077957 -154007575 - MER103 DNA DNA -47 119 5 2880 19 0 0 chr5 49078481 49078799 -154006733 + AluYb8 SINE Alu 1 318 0 323 183 0 0 chr5 49080014 49080074 -154005458 - MER116 DNA Mariner -15 65 6 21 0 0 0 chr5 49080125 49080146 -154005386 + AT_rich Low_complexity Low_complexity 1 21 0 396 211 73 18 chr5 49080286 49080395 -154005137 + MER117 DNA MER1_type 53 167 -30 812 311 20 4 chr5 49081796 49082040 -154003492 - MIR SINE MIR -3 259 12 1080 254 24 0 chr5 49082311 49082559 -154002973 + MIR SINE MIR 9 262 0 234 0 0 0 chr5 49082624 49082650 -154002882 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 26 0 0 0 chr5 49083019 49083045 -154002487 + AT_rich Low_complexity Low_complexity 1 26 0 2225 120 75 61 chr5 49083350 49083776 -154001756 - MSTB1 LTR MaLR 0 432 1 2301 82 0 3 chr5 49083853 49084144 -154001388 - AluY SINE Alu -21 290 1 362 318 68 27 chr5 49084622 49084770 -154000762 + L3b LINE CR1 1336 1489 -94 1342 111 44 22 chr5 49084770 49084995 -154000537 - MER30 DNA MER1_type 0 230 1 549 280 161 64 chr5 49085021 49085191 -154000341 - L2 LINE L2 -24 3289 3137 696 159 0 80 chr5 49085191 49085329 -154000203 - FLAM_C SINE Alu -6 127 1 549 280 161 64 chr5 49085329 49085972 -153999560 - L2 LINE L2 -176 3137 2377 791 152 8 15 chr5 49086059 49086191 -153999341 - FLAM_C SINE Alu -2 131 1 341 288 149 39 chr5 49086198 49086413 -153999119 - MIR SINE MIR -13 249 15 222 37 0 0 chr5 49086568 49086595 -153998937 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 395 240 122 48 chr5 49089554 49089725 -153995807 - L1ME4a LINE L1 -236 5885 5685 1782 158 52 9 chr5 49089725 49090054 -153995478 - MER2 DNA MER2_type 0 344 2 395 240 122 48 chr5 49090054 49090153 -153995379 - L1ME4a LINE L1 -436 5685 5595 246 241 224 24 chr5 49090237 49090407 -153995125 - L1ME4a LINE L1 -19 6102 5899 424 207 17 0 chr5 49090407 49090523 -153995009 + (TA)n Simple_repeat Simple_repeat 1 118 0 377 318 62 22 chr5 49090596 49090870 -153994662 - MLT1K LTR MaLR -20 568 284 377 299 7 28 chr5 49090956 49091100 -153994432 - MER5A DNA MER1_type -6 183 43 33 43 0 0 chr5 49091229 49091276 -153994256 + AT_rich Low_complexity Low_complexity 1 47 0 2198 119 0 0 chr5 49092218 49092511 -153993021 - AluSq SINE Alu -20 293 1 5684 93 12 4 chr5 49092643 49093842 -153991690 - L1PB1 LINE L1 -9 6142 4910 304 313 70 8 chr5 49093924 49094052 -153991480 - L1ME4a LINE L1 -4 6117 5982 21 0 0 0 chr5 49095346 49095367 -153990165 + AT_rich Low_complexity Low_complexity 1 21 0 210 143 0 0 chr5 49095594 49095629 -153989903 + (A)n Simple_repeat Simple_repeat 1 35 0 252 297 61 99 chr5 49096910 49097122 -153988410 + L2 LINE L2 2807 3010 -262 235 306 16 0 chr5 49097278 49097340 -153988192 + L2 LINE L2 3208 3270 -2 868 252 117 58 chr5 49098789 49099148 -153986384 - MLT1J1 LTR MaLR -24 422 37 2226 137 2 49 chr5 49099148 49099557 -153985975 - MLT1B LTR MaLR 0 390 1 868 252 117 58 chr5 49099557 49099590 -153985942 - MLT1J1 LTR MaLR -409 37 7 384 293 157 7 chr5 49099653 49099800 -153985732 + MIR SINE MIR 20 188 -74 2285 129 19 11 chr5 49101554 49101926 -153983606 + THE1C LTR MaLR 1 375 0 22 0 0 0 chr5 49102487 49102509 -153983023 + AT_rich Low_complexity Low_complexity 1 22 0 183 146 0 146 chr5 49103245 49103300 -153982232 + L2 LINE L2 3267 3313 0 225 127 16 32 chr5 49104103 49104166 -153981366 + (TA)n Simple_repeat Simple_repeat 2 63 0 207 208 39 13 chr5 49104845 49104922 -153980610 + (TA)n Simple_repeat Simple_repeat 2 80 0 21 36 0 0 chr5 49106209 49106237 -153979295 + AT_rich Low_complexity Low_complexity 1 28 0 1628 163 29 7 chr5 49106237 49106513 -153979019 - AluJo SINE Alu -30 282 1 438 213 41 57 chr5 49106753 49106875 -153978657 + L2 LINE L2 3193 3312 -1 233 132 44 44 chr5 49108422 49108505 -153977027 + (TATATG)n Simple_repeat Simple_repeat 1 83 0 207 170 0 0 chr5 49108856 49108903 -153976629 + (TA)n Simple_repeat Simple_repeat 1 47 0 318 289 0 0 chr5 49108903 49108993 -153976539 - L1MC4 LINE L1 -1339 6703 6614 2502 63 3 0 chr5 49109004 49109307 -153976225 - AluY SINE Alu -7 304 1 1673 149 0 47 chr5 49109593 49109869 -153975663 - AluJb SINE Alu -25 287 25 780 219 71 112 chr5 49111104 49111373 -153974159 - MIR SINE MIR -1 261 4 2206 105 0 3 chr5 49114589 49114883 -153970649 + AluSx SINE Alu 1 293 -19 341 371 52 16 chr5 49115837 49116045 -153969487 + MIR SINE MIR 14 232 -30 2042 141 3 0 chr5 49116968 49117265 -153968267 + AluSx SINE Alu 1 298 -14 4062 186 46 2 chr5 49117270 49118111 -153967421 - MER63C DNA MER1_type -52 878 1 1858 103 128 3 chr5 49118638 49118959 -153966573 + MER46B DNA MER2_type 1 236 0 805 112 26 0 chr5 49119455 49119571 -153965961 + FLAM_C SINE Alu 1 119 -24 29 60 0 0 chr5 49119571 49119621 -153965911 + AT_rich Low_complexity Low_complexity 1 50 0 202 346 59 44 chr5 49120413 49120549 -153964983 - L2 LINE L2 -19 3253 3116 184 373 0 0 chr5 49120816 49120875 -153964657 + L2 LINE L2 3203 3261 -11 2319 100 0 0 chr5 49121151 49121450 -153964082 + AluSx SINE Alu 5 303 -9 1848 239 29 77 chr5 49121685 49122349 -153963183 - L1ME LINE L1 -5433 637 6 2222 109 3 0 chr5 49122743 49123036 -153962496 + AluSg1 SINE Alu 1 294 -15 376 222 183 6 chr5 49123309 49123489 -153962043 - L1ME4a LINE L1 -274 5847 5636 1783 154 146 8 chr5 49123831 49124207 -153961325 - MSTA LTR MaLR 0 428 1 23 0 0 0 chr5 49124229 49124252 -153961280 + AT_rich Low_complexity Low_complexity 1 23 0 279 0 0 0 chr5 49124684 49124715 -153960817 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4827 20 0 4 chr5 49124715 49125277 -153960255 - L1PA2 LINE L1 -11 6144 5585 208 250 0 26 chr5 49125655 49125731 -153959801 + T-rich Low_complexity Low_complexity 1 74 0 752 126 42 0 chr5 49125906 49126025 -153959507 + AluJb SINE Alu 1 124 -188 265 290 37 19 chr5 49126145 49126252 -153959280 - L1ME4a LINE L1 -484 5637 5529 369 211 70 44 chr5 49126555 49126669 -153958863 - MIR SINE MIR -31 231 115 196 264 125 42 chr5 49126675 49126747 -153958785 + L2 LINE L2 3190 3267 -5 223 191 0 0 chr5 49127607 49127649 -153957883 + A-rich Low_complexity Low_complexity 1 42 0 207 0 0 0 chr5 49128094 49128117 -153957415 + (TTA)n Simple_repeat Simple_repeat 2 24 0 10194 64 15 28 chr5 49128125 49129504 -153956028 - SVA Other Other -17 1369 8 32733 54 1 6 chr5 49130150 49136328 -153949204 - L1PA5 LINE L1 -4 6150 11 2179 120 0 3 chr5 49136642 49136941 -153948591 + AluSx SINE Alu 1 298 -14 478 302 8 0 chr5 49139015 49139141 -153946391 + MIR3 SINE MIR 3 129 -79 336 300 69 26 chr5 49139367 49139547 -153945985 + MER20B DNA MER1_type 7 199 -20 225 306 211 25 chr5 49139880 49140315 -153945217 - L2 LINE L2 -817 2497 1982 245 106 0 21 chr5 49140315 49140362 -153945170 + (GA)n Simple_repeat Simple_repeat 1 46 0 2255 126 73 45 chr5 49140777 49141199 -153944333 - Tigger2a DNA MER2_type 0 434 1 209 232 14 29 chr5 49141788 49141857 -153943675 + CT-rich Low_complexity Low_complexity 2 69 0 34 0 0 0 chr5 49142786 49142820 -153942712 + AT_rich Low_complexity Low_complexity 1 34 0 2291 99 0 0 chr5 49143902 49144204 -153941328 + AluY SINE Alu 5 306 -5 2200 113 0 10 chr5 49144309 49144619 -153940913 - AluSq SINE Alu -6 307 1 27 29 0 0 chr5 49144921 49144955 -153940577 + AT_rich Low_complexity Low_complexity 1 34 0 2226 122 7 0 chr5 49145125 49145428 -153940104 - AluSx SINE Alu -5 307 3 192 77 0 0 chr5 49145883 49145909 -153939623 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 377 244 196 84 chr5 49149723 49149948 -153935584 - MIR SINE MIR -11 251 2 1643 170 94 3 chr5 49151065 49151395 -153934137 + MLT1D LTR MaLR 1 360 -145 5853 132 31 10 chr5 49151405 49152646 -153932886 - L1PB1 LINE L1 0 6151 4888 3130 126 19 0 chr5 49152646 49153184 -153932348 + L1PBa LINE L1 1761 2308 -4555 831 145 6 66 chr5 49153187 49153353 -153932179 + MLT1D LTR MaLR 350 505 0 396 0 0 0 chr5 49154059 49154103 -153931429 + (TG)n Simple_repeat Simple_repeat 2 45 0 2132 107 0 14 chr5 49154103 49154392 -153931140 - AluSx SINE Alu -27 285 1 696 221 47 70 chr5 49155245 49155310 -153930222 - L1MC4 LINE L1 -763 7279 7214 2331 96 3 0 chr5 49155310 49155612 -153929920 - AluSq SINE Alu -10 303 1 696 221 47 70 chr5 49155612 49155845 -153929687 - L1MC4 LINE L1 -828 7214 6988 5500 164 28 2 chr5 49157050 49157727 -153927805 - L1PB1 LINE L1 -1774 4372 3659 387 0 0 0 chr5 49157727 49157770 -153927762 + (TG)n Simple_repeat Simple_repeat 2 44 0 5500 164 28 2 chr5 49157770 49158084 -153927448 - L1PB1 LINE L1 -2487 3659 3355 259 269 15 0 chr5 49158302 49158369 -153927163 + L3 LINE CR1 864 931 -646 186 221 229 74 chr5 49158704 49158750 -153926782 + L3 LINE CR1 1183 1220 -357 1913 141 78 29 chr5 49158750 49159097 -153926435 - THE1B LTR MaLR 0 364 1 11439 102 11 1 chr5 49159099 49160660 -153924872 - THE1B-int LTR MaLR -2 1578 1 1954 107 42 139 chr5 49160660 49161063 -153924469 - THE1B LTR MaLR 0 364 1 186 221 229 74 chr5 49161063 49161134 -153924398 + L3 LINE CR1 1219 1323 -254 246 128 0 0 chr5 49161178 49161217 -153924315 + (CA)n Simple_repeat Simple_repeat 2 40 0 27 87 0 0 chr5 49161248 49161317 -153924215 + AT_rich Low_complexity Low_complexity 1 69 0 3194 127 111 30 chr5 49161317 49161875 -153923657 + MER6A DNA MER2_type 3 605 0 319 267 11 11 chr5 49161922 49162012 -153923520 - L1MC4 LINE L1 -1339 6703 6614 214 282 188 12 chr5 49162015 49162100 -153923432 + L3 LINE CR1 1398 1497 -80 189 0 0 0 chr5 49162116 49162137 -153923395 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 236 250 0 0 chr5 49162141 49162193 -153923339 - L2 LINE L2 -21 3292 3241 2229 123 0 0 chr5 49162450 49162750 -153922782 - AluSx SINE Alu -12 300 1 5204 139 38 18 chr5 49164202 49165038 -153920494 - L1PA16 LINE L1 -6 6160 5292 198 0 0 0 chr5 49165038 49165060 -153920472 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 5204 139 38 18 chr5 49165060 49165344 -153920188 - L1PA16 LINE L1 -874 5292 5015 312 303 56 63 chr5 49165445 49165587 -153919945 + MIR SINE MIR 3 143 -65 258 81 0 0 chr5 49168866 49168903 -153916629 + (TG)n Simple_repeat Simple_repeat 2 38 0 33 56 0 0 chr5 49169151 49169205 -153916327 + AT_rich Low_complexity Low_complexity 1 54 0 27 87 0 0 chr5 49169477 49169546 -153915986 + AT_rich Low_complexity Low_complexity 1 69 0 4371 38 2 0 chr5 49169708 49170232 -153915300 + L1PA5 LINE L1 5629 6153 -1 797 159 31 0 chr5 49170323 49170486 -153915046 + L1MA8 LINE L1 6097 6264 -27 24 0 0 0 chr5 49170797 49170821 -153914711 + AT_rich Low_complexity Low_complexity 1 24 0 2926 3 0 0 chr5 49171512 49171826 -153913706 + AluYb8 SINE Alu 1 314 -4 269 138 50 0 chr5 49173732 49173812 -153911720 + (TA)n Simple_repeat Simple_repeat 1 84 0 255 152 0 0 chr5 49176661 49176707 -153908825 + CT-rich Low_complexity Low_complexity 3 48 0 685 203 16 8 chr5 49176712 49176840 -153908692 - FLAM_A SINE Alu -3 130 2 1203 254 119 31 chr5 49177420 49178027 -153907505 + MLT2F LTR ERVL 4 663 0 376 207 165 25 chr5 49178664 49178785 -153906747 + MLT1H1 LTR MaLR 418 555 0 1794 124 45 31 chr5 49179282 49179573 -153905959 - AluSx SINE Alu -17 295 1 514 246 80 17 chr5 49179661 49179836 -153905696 + L2 LINE L2 3128 3313 0 458 268 57 6 chr5 49180631 49180788 -153904744 + MER103 DNA DNA 2 166 0 887 103 0 0 chr5 49180933 49181050 -153904482 - Tigger1 DNA MER2_type 0 2418 2302 7770 50 1 4 chr5 49181053 49182814 -153902718 + L1P LINE L1 3 1886 -4260 2011 213 15 36 chr5 49282814 49283289 -153802243 - MER44D DNA MER2_type -85 520 1 189 0 0 0 chr5 49283295 49283316 -153802216 + (TG)n Simple_repeat Simple_repeat 2 22 0 268 297 166 29 chr5 49283369 49283682 -153801850 - L2 LINE L2 -342 2972 2617 649 234 35 80 chr5 49283776 49283977 -153801555 + L2 LINE L2 3121 3312 -1 283 200 21 143 chr5 49284459 49284599 -153800933 - HAL1 LINE L1 -10 2497 2375 229 207 22 59 chr5 49284778 49284913 -153800619 + (TATATG)n Simple_repeat Simple_repeat 2 131 0 * 296 158 29 70 chr5 49284831 49285002 -153800530 + (TA)n Simple_repeat Simple_repeat 1 164 0 389 293 95 44 chr5 49285067 49285340 -153800192 - HAL1 LINE L1 -428 2079 1793 212 57 0 29 chr5 49285340 49285375 -153800157 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 4434 39 2 0 chr5 49285375 49285910 -153799622 - L1PA4 LINE L1 -24 6131 5596 762 209 106 91 chr5 49286013 49286267 -153799265 - L1M4b LINE L1 -6601 258 1 398 290 161 0 chr5 49287352 49287507 -153798025 + MIR SINE MIR 76 255 -7 1364 165 86 16 chr5 49287860 49288115 -153797417 + MSTA LTR MaLR 156 428 0 8826 155 9 37 chr5 49288117 49289741 -153795791 + MSTA-int LTR MaLR 3 1580 0 1775 169 158 11 chr5 49289741 49290114 -153795418 + MSTA LTR MaLR 1 428 0 284 282 128 26 chr5 49290217 49290373 -153795159 - MLT1I LTR MaLR -46 363 192 5152 120 13 3 chr5 49290423 49295465 -153790067 - L1PA8 LINE L1 -2 6170 999 190 189 68 68 chr5 49295572 49295646 -153789886 + L3 LINE CR1 430 503 -1074 2239 101 0 0 chr5 49297913 49298219 -153787313 - AluY SINE Alu -5 306 1 5428 121 27 27 chr5 49299002 49300059 -153785473 - L1PA15 LINE L1 -1 6164 5103 1147 131 46 51 chr5 49300059 49300296 -153785236 + THE1C LTR MaLR 140 375 0 9059 159 9 37 chr5 49300296 49301921 -153783611 + THE1C-int LTR MaLR 1 1580 0 1737 142 48 46 chr5 49301928 49302301 -153783231 + THE1C LTR MaLR 2 375 0 10283 198 35 9 chr5 49302301 49304420 -153781112 - L1PA15 LINE L1 -1147 4999 2819 369 0 0 0 chr5 49304420 49304461 -153781071 + (TG)n Simple_repeat Simple_repeat 2 42 0 10283 198 35 9 chr5 49304461 49304564 -153780968 - L1PA15 LINE L1 -3327 2819 2720 262 336 109 25 chr5 49304583 49304702 -153780830 - L2 LINE L2 -33 3239 3111 229 262 48 29 chr5 49304898 49305001 -153780531 - L1M4 LINE L1 -1326 4820 4716 373 352 50 19 chr5 49305185 49305503 -153780029 - L1M4 LINE L1 -1708 4438 4111 188 371 11 11 chr5 49305850 49305939 -153779593 - MIR SINE MIR -71 191 103 1533 144 22 0 chr5 49306587 49306857 -153778675 - L1MA3 LINE L1 0 6305 6030 191 340 195 47 chr5 49306860 49307502 -153778030 - L2 LINE L2 -575 2739 2003 315 260 19 65 chr5 49307504 49307691 -153777841 + L1MC/D LINE L1 3912 4093 -2053 402 265 0 20 chr5 49307771 49307873 -153777659 + MLT2E LTR ERVL 32 131 -497 475 313 60 30 chr5 49308536 49308737 -153776795 - MIR SINE MIR -37 225 19 261 336 0 0 chr5 49308840 49308977 -153776555 + L1MC/D LINE L1 5261 5397 -777 21 0 0 0 chr5 49309567 49309588 -153775944 + AT_rich Low_complexity Low_complexity 1 21 0 238 306 27 9 chr5 49309744 49309855 -153775677 + L1MC/D LINE L1 5692 5804 -2004 472 269 0 0 chr5 49309862 49309970 -153775562 + FAM SINE Alu 5 112 -73 412 313 34 28 chr5 49310104 49310283 -153775249 - Charlie8 DNA MER1_type -2142 275 96 6634 68 9 12 chr5 49310560 49311844 -153773688 + L1PA8 LINE L1 5045 6325 0 267 152 0 0 chr5 49311845 49311891 -153773641 + GA-rich Low_complexity Low_complexity 2 47 0 390 310 35 10 chr5 49311909 49312109 -153773423 + L1ME4a LINE L1 5621 5825 -296 23 68 0 0 chr5 49312125 49312169 -153773363 + AT_rich Low_complexity Low_complexity 1 44 0 276 250 43 35 chr5 49312486 49312602 -153772930 - L2 LINE L2 -1313 2001 1885 1030 250 122 24 chr5 49312911 49313517 -153772015 - L2 LINE L2 0 3313 2658 359 258 146 22 chr5 49313529 49313707 -153771825 + LTR33 LTR ERVL 12 211 -310 243 386 10 10 chr5 49316035 49316136 -153769396 + MIR SINE MIR 16 116 -92 22 0 0 0 chr5 49317518 49317540 -153767992 + AT_rich Low_complexity Low_complexity 1 22 0 671 219 105 64 chr5 49317885 49318228 -153767304 - L1ME2 LINE L1 -10 6154 5798 459 200 32 12 chr5 49318210 49318395 -153767137 - L1ME2 LINE L1 -706 5458 5220 * 277 296 31 19 chr5 49318402 49318561 -153766971 - L1ME2 LINE L1 -968 5178 5018 201 349 80 40 chr5 49318831 49319006 -153766526 - L2 LINE L2 0 3313 3132 1474 210 35 118 chr5 49319808 49320298 -153765234 - MLT1E LTR MaLR -2 591 144 2187 121 0 3 chr5 49320298 49320603 -153764929 + AluSx SINE Alu 2 305 -7 1474 210 35 118 chr5 49320603 49320627 -153764905 - MLT1E LTR MaLR -449 144 120 663 221 29 41 chr5 49320623 49320795 -153764737 - MLT1E LTR MaLR -423 170 1 * 452 284 74 23 chr5 49321197 49321373 -153764159 + MIR SINE MIR 10 194 -68 936 286 94 29 chr5 49321545 49321929 -153763603 - MLT1I LTR MaLR 0 409 1 262 291 178 27 chr5 49323808 49324066 -153761466 + L1MEd LINE L1 1371 1667 -4863 306 328 76 12 chr5 49324324 49324574 -153760958 + L1MEd LINE L1 2309 2574 -3966 180 111 0 0 chr5 49324720 49324747 -153760785 + (TG)n Simple_repeat Simple_repeat 2 28 0 3014 51 0 127 chr5 49325026 49325539 -153759993 + LTR7 LTR ERV1 1 448 -2 4209 236 111 12 chr5 49325615 49325632 -153759900 + L1MC4 LINE L1 6480 6494 -1548 1291 235 96 12 chr5 49325632 49325977 -153759555 + MLT1A2 LTR MaLR 1 374 0 4209 236 111 12 chr5 49325977 49327252 -153758280 + L1MC4 LINE L1 6494 7900 -142 27 49 0 0 chr5 49327277 49327318 -153758214 + AT_rich Low_complexity Low_complexity 1 41 0 593 293 111 35 chr5 49327483 49327799 -153757733 + L1MEd LINE L1 3327 3618 -2922 8656 37 21 2 chr5 49327799 49328850 -153756682 + MER11C LTR ERVK 1 1071 0 593 293 111 35 chr5 49328850 49328869 -153756663 + L1MEd LINE L1 3618 3634 -2906 3170 80 5 16 chr5 49328869 49329318 -153756214 - MLT2A1 LTR ERVL 0 444 1 593 293 111 35 chr5 49329318 49329442 -153756090 + L1MEd LINE L1 3634 3822 -2718 197 299 30 15 chr5 49329751 49329818 -153755714 - L2 LINE L2 -8 3305 3238 192 374 141 0 chr5 49330065 49330164 -153755368 + MIR3 SINE MIR 13 125 -83 235 226 73 110 chr5 49330469 49330633 -153754899 + MER112 DNA MER1_type 4 161 -99 21 0 0 0 chr5 49331260 49331281 -153754251 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr5 49331373 49331416 -153754116 + AT_rich Low_complexity Low_complexity 1 43 0 28 38 0 19 chr5 49331459 49331478 -153754054 + AT_rich Low_complexity Low_complexity 1 19 -33 2636 184 38 12 chr5 49331478 49331978 -153753554 - MLT2B2 LTR ERVL -1 514 2 28 38 0 19 chr5 49331978 49332011 -153753521 + AT_rich Low_complexity Low_complexity 19 52 0 2429 63 0 3 chr5 49332055 49332354 -153753178 + AluY SINE Alu 1 298 -13 350 304 76 99 chr5 49332667 49333335 -153752197 + L2 LINE L2 2323 2975 -339 258 323 0 0 chr5 49334202 49334267 -153751265 + L2 LINE L2 3243 3307 -6 391 174 60 81 chr5 49334586 49334735 -153750797 - L1MD3 LINE L1 0 7995 7850 69 48 0 0 chr5 49335169 49335273 -153750259 + AT_rich Low_complexity Low_complexity 1 104 0 21 36 0 0 chr5 49335439 49335467 -153750065 + AT_rich Low_complexity Low_complexity 1 28 0 235 309 25 12 chr5 49335869 49335950 -153749582 + MIR SINE MIR 65 146 -62 21 36 0 0 chr5 49336155 49336183 -153749349 + AT_rich Low_complexity Low_complexity 1 28 0 253 221 39 0 chr5 49337522 49337625 -153747907 + (TA)n Simple_repeat Simple_repeat 1 107 0 2156 131 0 0 chr5 49338019 49338325 -153747207 - AluSx SINE Alu -5 307 2 224 204 0 0 chr5 49338536 49338585 -153746947 + A-rich Low_complexity Low_complexity 4 52 0 824 331 112 52 chr5 49339489 49340024 -153745508 + MLT1K LTR MaLR 12 578 -10 185 286 95 0 chr5 49340215 49340278 -153745254 - MIR3 SINE MIR -3 205 137 25 0 0 0 chr5 49340629 49340654 -153744878 + AT_rich Low_complexity Low_complexity 1 25 0 628 151 17 0 chr5 49341034 49341153 -153744379 - L1MA9 LINE L1 -1 6311 6191 1969 175 41 3 chr5 49341154 49341520 -153744012 - LTR26 LTR ERV1 0 603 224 463 283 60 72 chr5 49341520 49341771 -153743761 - L1M3b LINE L1 -5677 604 357 * 808 259 22 48 chr5 49341757 49342040 -153743492 - L1M3b LINE L1 -5861 420 1 221 0 35 0 chr5 49342346 49342375 -153743157 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2217 229 78 75 chr5 49342605 49343822 -153741710 + L1MC5 LINE L1 6475 7705 -256 2145 108 0 0 chr5 49343822 49344134 -153741398 + AluSx SINE Alu 7 318 0 2217 229 78 75 chr5 49344134 49344165 -153741367 + L1MC5 LINE L1 7705 7734 -227 943 206 115 41 chr5 49344175 49344540 -153740992 + MSTC LTR MaLR 1 428 0 432 241 53 59 chr5 49344541 49344728 -153740804 + L1MC5 LINE L1 7741 7926 -35 596 299 68 18 chr5 49344802 49345023 -153740509 + MIR SINE MIR 15 246 -16 235 286 116 18 chr5 49345273 49345385 -153740147 - L2 LINE L2 -7 3306 3184 263 333 63 6 chr5 49346033 49346192 -153739340 + MIR SINE MIR 83 250 -12 381 22 0 0 chr5 49347704 49347750 -153737782 + (CA)n Simple_repeat Simple_repeat 2 47 0 2142 120 0 0 chr5 49347866 49348158 -153737374 + AluSx SINE Alu 1 292 -20 653 346 39 15 chr5 49348466 49349009 -153736523 + L1ME LINE L1 5258 5813 -357 229 331 38 54 chr5 49349708 49349892 -153735640 - L2 LINE L2 0 3313 3133 315 289 0 12 chr5 49350663 49350746 -153734786 - MIR SINE MIR -67 141 60 1640 128 16 62 chr5 49350790 49351094 -153734438 - AluSx SINE Alu -22 290 1 1510 161 18 18 chr5 49351169 49351455 -153734077 + THE1C LTR MaLR 90 375 0 275 256 102 43 chr5 49351482 49351614 -153733918 - MIR SINE MIR -67 141 25 708 308 112 33 chr5 49351622 49351927 -153733605 + MER119 DNA MER1_type 5 333 -250 264 200 320 0 chr5 49351928 49352028 -153733504 + MER119 DNA MER1_type 438 569 -14 206 273 76 91 chr5 49352941 49353073 -153732459 + MER5B DNA MER1_type 6 136 -53 375 281 22 0 chr5 49353142 49353231 -153732301 + MER5A DNA MER1_type 22 112 -77 324 0 0 0 chr5 49354391 49354427 -153731105 + (T)n Simple_repeat Simple_repeat 1 36 0 324 0 0 0 chr5 49355249 49355285 -153730247 + (T)n Simple_repeat Simple_repeat 1 36 0 1758 93 0 0 chr5 49355841 49356078 -153729454 - AluY SINE Alu -8 303 67 305 125 47 31 chr5 49356302 49356366 -153729166 + MADE1 DNA Mariner 16 80 0 2039 254 52 26 chr5 49356661 49357162 -153728370 + MLT1F LTR MaLR 29 542 0 24 0 0 0 chr5 49359830 49359854 -153725678 + AT_rich Low_complexity Low_complexity 1 24 0 1400 108 0 0 chr5 49360013 49360217 -153725315 + L1MA2 LINE L1 6101 6304 0 240 247 26 0 chr5 49360220 49360297 -153725235 + A-rich Low_complexity Low_complexity 4 82 0 190 160 40 0 chr5 49360957 49361007 -153724525 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 1566 173 58 7 chr5 49361579 49361926 -153723606 + L1ME3A LINE L1 1331 1782 -4644 295 22 22 22 chr5 49362989 49363034 -153722498 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 225 211 18 18 chr5 49363383 49363440 -153722092 + (CATA)n Simple_repeat Simple_repeat 4 60 0 644 282 22 44 chr5 49363781 49364097 -153721435 - L1ME LINE L1 -389 5773 5465 2148 254 52 23 chr5 49364111 49364880 -153720652 + L1ME3A LINE L1 3866 4656 -1770 202 213 64 0 chr5 49365911 49365958 -153719574 - L2 LINE L2 -2 3311 3262 316 242 22 44 chr5 49368245 49368336 -153717196 - L2 LINE L2 -32 3281 3193 3031 129 46 12 chr5 49369116 49369613 -153715919 - MER75 DNA T2_type 0 514 1 1326 87 0 0 chr5 49369648 49369831 -153715701 - AluY SINE Alu -5 306 124 2418 73 0 6 chr5 49371183 49371496 -153714036 + AluY SINE Alu 1 311 0 21 71 0 0 chr5 49371701 49371743 -153713789 + AT_rich Low_complexity Low_complexity 1 42 0 212 405 0 0 chr5 49372307 49372391 -153713141 - L2 LINE L2 -317 2955 2872 261 212 45 0 chr5 49372884 49372950 -153712582 + L1ME3A LINE L1 5644 5712 -738 994 195 29 25 chr5 49372950 49373227 -153712305 + L1MA4 LINE L1 6012 6289 -11 180 0 0 0 chr5 49373509 49373529 -153712003 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 416 257 104 6 chr5 49373550 49373733 -153711799 + L1ME3A LINE L1 6029 6229 -221 1315 116 0 0 chr5 49373933 49374114 -153711418 - AluSc SINE Alu -14 295 115 380 246 97 23 chr5 49374540 49374715 -153710817 - Charlie7 DNA MER1_type -716 1896 1709 1009 247 174 10 chr5 49374737 49375121 -153710411 - Charlie7 DNA MER1_type -2074 538 92 4499 30 0 2 chr5 49375658 49376194 -153709338 - L1PA3 LINE L1 -3 6152 5618 2659 34 0 0 chr5 49376194 49376516 -153709016 + L1P LINE L1 1724 2045 -4101 442 232 32 0 chr5 49376773 49376868 -153708664 + MIR3 SINE MIR 100 197 -11 316 317 71 20 chr5 49376972 49377172 -153708360 - MIR SINE MIR -11 251 17 913 298 163 14 chr5 49378310 49378739 -153706793 - L2 LINE L2 -5 3308 2816 184 183 17 17 chr5 49379057 49379117 -153706415 + CT-rich Low_complexity Low_complexity 3 62 0 1368 189 107 0 chr5 49379135 49379453 -153706079 + L1MD1 LINE L1 5890 6241 -1 229 284 23 0 chr5 49379890 49379978 -153705554 - L1MC/D LINE L1 -2530 5512 5423 328 341 15 0 chr5 49380265 49380382 -153705150 - MER94 DNA DNA 0 134 13 1937 117 31 7 chr5 49380382 49380673 -153704859 - AluSc SINE Alu -11 298 1 328 341 15 0 chr5 49380673 49380687 -153704845 - MER94 DNA DNA -121 13 1 251 298 63 21 chr5 49380720 49380911 -153704621 + L1M4 LINE L1 4919 5117 -1029 367 305 80 13 chr5 49383395 49383546 -153701986 - LTR16A LTR ERVL -21 429 269 184 324 28 28 chr5 49384483 49384591 -153700941 - MIR SINE MIR -6 256 149 210 333 22 22 chr5 49384625 49384715 -153700817 - MIR SINE MIR -100 108 19 2029 117 3 3 chr5 49384978 49385342 -153700190 + AluSg SINE Alu 1 364 0 507 190 204 29 chr5 49385948 49386085 -153699447 + MER20 DNA MER1_type 59 219 0 286 299 93 0 chr5 49386776 49386873 -153698659 + MARNA DNA Mariner 468 573 -13 2233 192 28 21 chr5 49387451 49387699 -153697833 - MLT1C LTR MaLR 0 467 213 1574 205 36 25 chr5 49387699 49388060 -153697472 + MLT1A1 LTR MaLR 1 365 0 2233 192 28 21 chr5 49388060 49388238 -153697294 - MLT1C LTR MaLR -254 213 38 328 308 60 26 chr5 49390332 49390449 -153695083 + MLT1K LTR MaLR 146 266 -322 692 43 0 11 chr5 49391786 49391879 -153693653 + (TTCC)n Simple_repeat Simple_repeat 4 95 0 1298 187 97 21 chr5 49391900 49392073 -153693459 - AluJo SINE Alu 0 312 107 198 0 0 0 chr5 49392073 49392095 -153693437 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 1298 187 97 21 chr5 49392095 49392210 -153693322 - AluJo SINE Alu -205 107 2 1995 103 0 4 chr5 49395669 49395972 -153689560 + AluSg SINE Alu 8 309 0 289 299 91 19 chr5 49397524 49397678 -153687854 - L2 LINE L2 -38 3275 3111 32 75 0 0 chr5 49397870 49397937 -153687595 + AT_rich Low_complexity Low_complexity 1 67 0 236 321 29 58 chr5 49398015 49398152 -153687380 - MER5B DNA MER1_type -44 134 2 874 220 16 0 chr5 49398348 49398534 -153686998 + MER5A DNA MER1_type 1 189 0 22 0 0 0 chr5 49398745 49398767 -153686765 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr5 49399044 49399065 -153686467 + AT_rich Low_complexity Low_complexity 1 21 0 818 265 31 5 chr5 49400973 49401196 -153684336 + MIR SINE MIR 7 235 -27 222 37 0 0 chr5 49401742 49401769 -153683763 + (CA)n Simple_repeat Simple_repeat 2 28 0 293 275 83 25 chr5 49401798 49401918 -153683614 - MIR SINE MIR -75 187 61 23 0 0 0 chr5 49402635 49402658 -153682874 + AT_rich Low_complexity Low_complexity 1 23 0 362 211 95 0 chr5 49403038 49403133 -153682399 + L1MD2 LINE L1 6256 6359 0 22 56 0 0 chr5 49403961 49403997 -153681535 + AT_rich Low_complexity Low_complexity 1 36 0 198 353 85 46 chr5 49404579 49404732 -153680800 - L2 LINE L2 -4 3268 3110 197 305 43 85 chr5 49404806 49404970 -153680562 - L2 LINE L2 -221 3051 2895 1550 157 8 23 chr5 49405486 49405845 -153679687 + MER1B DNA MER1_type 26 339 0 687 267 87 0 chr5 49405949 49406110 -153679422 - MER5A DNA MER1_type 0 189 15 223 297 70 86 chr5 49408602 49408730 -153676802 - MIR3 SINE MIR -1 207 82 16875 106 61 22 chr5 49409500 49410377 -153675155 + Charlie3 DNA MER1_type 1 842 -1864 1493 143 75 23 chr5 49410377 49410642 -153674890 - AluJb SINE Alu 0 312 34 16875 106 61 22 chr5 49410642 49411431 -153674101 + Charlie3 DNA MER1_type 842 1599 -1107 2069 132 0 3 chr5 49411431 49411727 -153673805 - AluSx SINE Alu -17 295 1 16875 106 61 22 chr5 49411727 49412663 -153672869 + Charlie3 DNA MER1_type 1599 2706 0 186 43 0 0 chr5 49413663 49413686 -153671846 + (TCTA)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr5 49414315 49414337 -153671195 + AT_rich Low_complexity Low_complexity 1 22 0 6734 21 24 0 chr5 49414732 49415537 -153669995 + L1PA4 LINE L1 5320 6143 -12 205 157 78 0 chr5 49415707 49415758 -153669774 + A-rich Low_complexity Low_complexity 1 55 0 1527 169 0 37 chr5 49416072 49416345 -153669187 - AluJb SINE Alu -21 291 29 1544 167 0 16 chr5 49418140 49418397 -153667135 + AluJo SINE Alu 1 253 -59 549 165 31 0 chr5 49418403 49418500 -153667032 + L1PB4 LINE L1 5831 5930 -226 891 192 13 0 chr5 49418505 49418661 -153666871 + AluJo SINE Alu 125 282 -30 1989 122 0 30 chr5 49418836 49419139 -153666393 - AluSg SINE Alu -16 294 1 376 307 27 40 chr5 49421839 49421989 -153663543 + MIR3 SINE MIR 58 205 -3 382 159 37 0 chr5 49422310 49422393 -153663139 - MER5A DNA MER1_type -99 90 4 238 223 32 0 chr5 49422493 49422587 -153662945 + GA-rich Low_complexity Low_complexity 3 99 0 26 30 0 0 chr5 49422724 49422757 -153662775 + AT_rich Low_complexity Low_complexity 1 33 0 229 282 27 64 chr5 49423009 49423119 -153662413 - L2 LINE L2 -36 3277 3172 190 281 0 18 chr5 49423227 49423284 -153662248 - MIR SINE MIR -103 159 104 383 21 0 0 chr5 49424158 49424205 -153661327 - L1PA6 LINE L1 -3 6151 6105 346 279 70 31 chr5 49426297 49426426 -153659106 + MIR SINE MIR 88 221 -41 246 275 202 28 chr5 49426840 49427018 -153658514 + L1ME4a LINE L1 3624 3832 -2314 2180 96 3 0 chr5 49427325 49427616 -153657916 + AluY SINE Alu 1 292 -19 312 254 120 62 chr5 49427629 49428003 -153657529 + L1ME4a LINE L1 5708 6103 -18 21 0 0 0 chr5 49428851 49428872 -153656660 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr5 49430492 49430519 -153655013 + (A)n Simple_repeat Simple_repeat 1 27 0 205 238 0 32 chr5 49430528 49430591 -153654941 + GA-rich Low_complexity Low_complexity 2 62 0 22 0 0 0 chr5 49431819 49431841 -153653691 + AT_rich Low_complexity Low_complexity 1 22 0 1698 231 38 21 chr5 49433167 49433644 -153651888 - MER113 DNA MER1_type? -36 485 1 315 0 0 0 chr5 49434234 49434269 -153651263 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr5 49434758 49434781 -153650751 + AT_rich Low_complexity Low_complexity 1 23 0 640 310 179 37 chr5 49435113 49436350 -153649182 + L2 LINE L2 1625 3039 -274 563 210 118 75 chr5 49436395 49436581 -153648951 + MER3 DNA MER1_type 16 209 0 227 283 0 0 chr5 49436538 49436591 -153648941 - MER3 DNA MER1_type -119 90 38 * 34 42 0 0 chr5 49436608 49436656 -153648876 + AT_rich Low_complexity Low_complexity 1 48 0 401 294 40 8 chr5 49436668 49436794 -153648738 + L2 LINE L2 3175 3304 -9 207 359 142 27 chr5 49436848 49437143 -153648389 + L2 LINE L2 2588 2916 -398 606 177 43 55 chr5 49438268 49438432 -153647100 + MER53 DNA DNA 2 163 -26 330 224 0 82 chr5 49439096 49439194 -153646338 - L1MC4 LINE L1 -1339 6703 6614 314 219 73 10 chr5 49439116 49439212 -153646320 + L1MC4 LINE L1 6614 6715 -1327 * 260 301 14 14 chr5 49439455 49439528 -153646004 + MIR SINE MIR 13 85 -177 240 86 0 0 chr5 49439702 49439737 -153645795 + (CA)n Simple_repeat Simple_repeat 2 36 0 23 54 0 0 chr5 49439831 49439868 -153645664 + AT_rich Low_complexity Low_complexity 1 37 0 334 258 72 36 chr5 49439936 49440130 -153645402 + L1ME4a LINE L1 5833 6033 -88 299 253 35 0 chr5 49440202 49440289 -153645243 + (TA)n Simple_repeat Simple_repeat 2 91 0 21 36 0 0 chr5 49440357 49440385 -153645147 + AT_rich Low_complexity Low_complexity 1 28 0 192 143 0 0 chr5 49441606 49441648 -153643884 + (CTA)n Simple_repeat Simple_repeat 1 42 0 256 219 85 0 chr5 49442432 49442514 -153643018 + MIR SINE MIR 109 197 -65 244 289 67 29 chr5 49442712 49442816 -153642716 + MIR SINE MIR 117 224 -38 235 203 31 0 chr5 49445120 49445184 -153640348 + (TA)n Simple_repeat Simple_repeat 1 66 0 345 279 29 0 chr5 49446871 49446975 -153638557 - MIR3 SINE MIR -17 191 85 748 210 45 35 chr5 49447153 49447353 -153638179 - MIR SINE MIR -59 203 2 228 318 47 19 chr5 49449234 49449341 -153636191 + MIR SINE MIR 74 183 -79 711 242 56 6 chr5 49449378 49449556 -153635976 - L1PB4 LINE L1 -12 6144 5958 309 263 175 9 chr5 49451766 49451880 -153633652 + MIR SINE MIR 35 167 -95 227 325 38 0 chr5 49452617 49452697 -153632835 + L2 LINE L2 3231 3313 0 711 230 54 0 chr5 49454095 49454243 -153631289 + MER20 DNA MER1_type 63 218 -1 233 298 0 64 chr5 49454329 49454423 -153631109 + MIR SINE MIR 122 209 -53 256 375 70 40 chr5 49454573 49454845 -153630687 + L3b LINE CR1 1289 1568 -15 219 69 0 0 chr5 49455787 49455816 -153629716 + (T)n Simple_repeat Simple_repeat 1 29 0 749 250 121 13 chr5 49457149 49457381 -153628151 + MIR SINE MIR 6 262 0 1648 192 17 7 chr5 49458329 49458631 -153626901 - AluJo SINE Alu -7 305 1 207 304 54 27 chr5 49459689 49459801 -153625731 - MER5A DNA MER1_type -68 121 7 2252 177 52 0 chr5 49460692 49461099 -153624433 + MSTC LTR MaLR 1 428 0 220 320 39 0 chr5 49461430 49461508 -153624024 - MIR SINE MIR -6 256 176 2152 185 21 58 chr5 49461678 49462196 -153623336 - MLT1D LTR MaLR 0 505 7 1346 237 39 48 chr5 49462219 49462636 -153622896 - MLT1D-int LTR MaLR -70 1665 881 3887 207 22 37 chr5 49462708 49463603 -153621929 - MLT1D-int LTR MaLR -484 887 6 1717 219 59 47 chr5 49463607 49464101 -153621431 - MLT1D LTR MaLR 0 505 6 291 319 62 19 chr5 49464180 49464340 -153621192 - MIR3 SINE MIR -36 172 6 275 268 41 10 chr5 49464688 49464785 -153620747 - MIR SINE MIR -85 177 78 260 393 113 32 chr5 49464817 49465224 -153620308 - L2 LINE L2 -26 3246 2807 278 264 35 0 chr5 49465393 49465480 -153620052 + MER94 DNA DNA 42 131 -3 385 269 70 91 chr5 49465743 49465985 -153619547 - MIR SINE MIR 0 262 26 255 31 0 0 chr5 49466156 49466188 -153619344 + (A)n Simple_repeat Simple_repeat 1 32 0 3312 106 21 0 chr5 49467332 49467814 -153617718 - Tigger4(Zombi) DNA MER2_type 0 2731 2240 1223 137 35 5 chr5 49467809 49468006 -153617526 - Tigger4(Zombi) DNA MER2_type -2528 203 1 * 2294 63 3 0 chr5 49468109 49468393 -153617139 - AluY SINE Alu -26 285 1 320 276 69 26 chr5 49468909 49469025 -153616507 + L2 LINE L2 3193 3313 0 209 329 0 0 chr5 49469031 49469104 -153616428 - MIR SINE MIR -61 201 129 21 36 0 0 chr5 49469940 49469968 -153615564 + AT_rich Low_complexity Low_complexity 1 28 0 1215 153 55 51 chr5 49470362 49470598 -153614934 + AluJo SINE Alu 1 237 -75 346 317 122 0 chr5 49474231 49474415 -153611117 + MIR SINE MIR 2 207 -55 248 128 0 21 chr5 49476979 49477026 -153608506 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 225 0 0 0 chr5 49477404 49477429 -153608103 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 227 246 0 18 chr5 49479210 49479267 -153606265 + G-rich Low_complexity Low_complexity 4 59 0 331 224 0 0 chr5 49480439 49480515 -153605017 + MER116 DNA Mariner 5 80 0 261 324 0 0 chr5 49482721 49482795 -153602737 - MIR3 SINE MIR -21 187 114 296 286 48 38 chr5 49483845 49483950 -153601582 - L2 LINE L2 -5 3308 3203 1518 241 82 120 chr5 49484529 49485447 -153600085 - L1MCc LINE L1 -5524 899 17 2311 74 0 3 chr5 49485530 49485827 -153599705 + AluY SINE Alu 1 296 -15 283 336 70 35 chr5 49486096 49486352 -153599180 - HAL1 LINE L1 -870 1637 1373 6576 35 1 0 chr5 49486519 49487781 -153597751 - L1PA3 LINE L1 -116 6039 4777 3927 35 0 2 chr5 49487780 49488269 -153597263 + L1PA3 LINE L1 4267 4754 -1392 * 686 270 78 9 chr5 49488269 49488499 -153597033 - L1MCc LINE L1 -5067 1356 1111 451 297 147 44 chr5 49488753 49489181 -153596351 + LTR33 LTR ERVL 1 472 -49 260 338 27 61 chr5 49490073 49490221 -153595311 - MIR3 SINE MIR -3 205 63 2228 102 57 28 chr5 49490640 49490994 -153594538 + THE1B LTR MaLR 1 364 0 25 75 0 0 chr5 49491266 49491319 -153594213 + AT_rich Low_complexity Low_complexity 1 53 0 360 0 0 0 chr5 49491386 49491426 -153594106 + (CA)n Simple_repeat Simple_repeat 2 41 0 2501 93 31 6 chr5 49493616 49493971 -153591561 + THE1B LTR MaLR 1 364 0 288 386 0 41 chr5 49494767 49494912 -153590620 - MIR3 SINE MIR -3 205 67 1793 212 18 83 chr5 49495551 49495823 -153589709 + MLT2B1 LTR ERVL 1 289 -231 1686 131 106 4 chr5 49495823 49496098 -153589434 + AluSx SINE Alu 1 303 -9 1793 212 18 83 chr5 49496098 49496340 -153589192 + MLT2B1 LTR ERVL 289 479 -41 224 75 0 25 chr5 49496340 49496380 -153589152 + (TA)n Simple_repeat Simple_repeat 2 40 0 1793 212 18 83 chr5 49496380 49496420 -153589112 + MLT2B1 LTR ERVL 479 520 0 300 262 112 9 chr5 49496921 49497028 -153588504 + MLT1L LTR MaLR 150 267 -348 259 232 51 65 chr5 49497206 49497344 -153588188 + L1M4 LINE L1 1518 1755 -4889 381 274 30 30 chr5 49497391 49497526 -153588006 + L1M4 LINE L1 4511 4645 -1999 * 415 154 33 11 chr5 49497518 49497609 -153587923 + L1MC1 LINE L1 2136 2228 -4416 * 4365 229 71 14 chr5 49497603 49497806 -153587726 + L1MC1 LINE L1 2627 2817 -4014 2215 87 6 46 chr5 49497806 49498129 -153587403 + AluSx SINE Alu 1 310 -2 4365 229 71 14 chr5 49498129 49499453 -153586079 + L1MC1 LINE L1 2817 4063 -2768 1883 147 16 10 chr5 49499453 49499759 -153585773 + AluSx SINE Alu 1 308 -4 4365 229 71 14 chr5 49499759 49500035 -153585497 + L1MC1 LINE L1 4063 4322 -2509 204 40 0 0 chr5 49500035 49500060 -153585472 + (CA)n Simple_repeat Simple_repeat 2 26 0 4365 229 71 14 chr5 49500060 49500887 -153584645 + L1MC1 LINE L1 4322 5100 -1731 4365 154 23 24 chr5 49500887 49501427 -153584105 + L1MC1 LINE L1 6008 6548 -283 2254 70 0 3 chr5 49501427 49501711 -153583821 + AluY SINE Alu 20 302 -9 4365 154 23 24 chr5 49501711 49501995 -153583537 + L1MC1 LINE L1 6548 6831 0 4365 229 71 14 chr5 49501995 49502435 -153583097 + L1MC1 LINE L1 5100 6831 0 1524 317 55 16 chr5 49502731 49503500 -153582032 - L2 LINE L2 -152 3161 2363 567 316 48 19 chr5 49503501 49503710 -153581822 - L2 LINE L2 -1726 1588 1374 393 216 24 24 chr5 49503733 49503865 -153581667 + L1MC/D LINE L1 5600 5726 -428 1546 244 11 8 chr5 49504928 49505292 -153580240 + MLT1A1 LTR MaLR 1 365 0 538 286 58 75 chr5 49505442 49505750 -153579782 + LTR16A1 LTR ERVL 152 454 -3 777 289 58 43 chr5 49507568 49507914 -153577618 + MLT1J1 LTR MaLR 65 415 -31 495 334 190 12 chr5 49508552 49509038 -153576494 - L2 LINE L2 -7 3306 2736 874 158 0 0 chr5 49509058 49509191 -153576341 - AluJb SINE Alu -178 134 2 451 335 39 0 chr5 49509207 49509362 -153576170 - L2 LINE L2 -650 2664 2504 697 237 0 13 chr5 49509379 49509531 -153576001 - FAM SINE Alu 0 49 1 1750 289 54 11 chr5 49509847 49510369 -153575163 - MLT1H1 LTR MaLR -11 544 1 1369 207 160 12 chr5 49510385 49510728 -153574804 - MSTD LTR MaLR -2 394 1 2059 181 42 27 chr5 49511127 49511530 -153574002 + MLT2D LTR ERVL 3 422 -42 279 114 0 0 chr5 49511530 49511574 -153573958 + (CA)n Simple_repeat Simple_repeat 2 45 0 2059 181 42 27 chr5 49511574 49511618 -153573914 + MLT2D LTR ERVL 422 464 0 376 260 50 66 chr5 49511859 49512040 -153573492 + MER5B DNA MER1_type 1 178 0 234 0 0 0 chr5 49512748 49512774 -153572758 + (TTG)n Simple_repeat Simple_repeat 2 27 0 28 0 0 0 chr5 49514548 49514576 -153570956 + AT_rich Low_complexity Low_complexity 1 28 0 281 275 148 21 chr5 49515211 49515353 -153570179 - MER5A DNA MER1_type -18 166 1 32 0 0 0 chr5 49515441 49515473 -153570059 + AT_rich Low_complexity Low_complexity 1 32 0 544 248 58 0 chr5 49516476 49516613 -153568919 - MIR SINE MIR -26 236 92 383 178 0 0 chr5 49517423 49517496 -153568036 - MER53 DNA DNA -3 186 114 343 338 38 23 chr5 49517610 49517743 -153567789 - L2 LINE L2 0 3313 3179 21 0 0 0 chr5 49518168 49518189 -153567343 + AT_rich Low_complexity Low_complexity 1 21 0 2188 104 0 0 chr5 49518306 49518595 -153566937 + AluSq SINE Alu 1 289 -24 450 229 47 109 chr5 49518884 49519076 -153566456 + MIR3 SINE MIR 21 200 -8 * 453 300 143 32 chr5 49519042 49519449 -153566083 - L3 LINE CR1 -43 1534 1083 619 262 93 40 chr5 49519493 49519718 -153565814 - MIR SINE MIR -24 238 2 281 340 10 10 chr5 49519733 49519833 -153565699 - L3 LINE CR1 -504 1073 974 26 30 0 0 chr5 49519871 49519904 -153565628 + AT_rich Low_complexity Low_complexity 1 33 0 464 194 10 10 chr5 49520861 49520959 -153564573 + MER5A DNA MER1_type 9 106 -83 1386 175 48 8 chr5 49521155 49521407 -153564125 + AluJb SINE Alu 36 297 -15 401 301 70 52 chr5 49521453 49521682 -153563850 - MIR SINE MIR -7 255 23 187 333 0 0 chr5 49524942 49524996 -153560536 - MIR SINE MIR -72 136 83 414 79 0 0 chr5 49525016 49525079 -153560453 + (TG)n Simple_repeat Simple_repeat 2 64 0 491 349 101 17 chr5 49525931 49526229 -153559303 + MLT1I LTR MaLR 27 349 -60 393 344 43 21 chr5 49527571 49527757 -153557775 + MIR3 SINE MIR 13 202 -6 429 349 155 55 chr5 49528806 49528983 -153556549 - L2 LINE L2 -443 2871 2713 2643 184 11 2 chr5 49528983 49529446 -153556086 - MLT1C LTR MaLR 0 467 1 429 349 155 55 chr5 49529446 49530191 -153555341 - L2 LINE L2 -601 2713 1857 252 184 0 0 chr5 49533067 49533105 -153552427 - MER46C DNA MER2_type -10 328 291 471 113 0 0 chr5 49533106 49533177 -153552355 + (TA)n Simple_repeat Simple_repeat 1 71 0 615 307 40 15 chr5 49533438 49533640 -153551892 - MIR SINE MIR -55 207 1 886 73 28 34 chr5 49533869 49533893 -153551639 + (GAAA)n Simple_repeat Simple_repeat 1 200 0 886 73 28 34 chr5 49533893 49534071 -153551461 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 583 310 147 16 chr5 49535805 49536234 -153549298 - L1M4 LINE L1 -2748 3398 2914 30 27 0 0 chr5 49536238 49536275 -153549257 + AT_rich Low_complexity Low_complexity 1 37 0 225 300 40 7 chr5 49536617 49536767 -153548765 - L1M4 LINE L1 -3682 2464 2310 28 0 0 0 chr5 49537813 49537841 -153547691 + AT_rich Low_complexity Low_complexity 1 28 0 264 278 113 15 chr5 49538004 49538137 -153547395 - HAL1 LINE L1 -742 1765 1620 1757 190 45 3 chr5 49538163 49538495 -153547037 + MER7A DNA MER2_type 2 345 -1 2355 161 26 14 chr5 49538499 49538927 -153546605 - Tigger2a DNA MER2_type -1 433 1 231 261 109 11 chr5 49539116 49539208 -153546324 + L1MEd LINE L1 1111 1211 -4908 1584 153 121 103 chr5 49540007 49540543 -153544989 - LTR49 LTR ERV1 -49 546 1 10094 169 66 100 chr5 49540543 49542601 -153542931 - LTR49-int LTR ERV1 0 6331 4204 2195 113 0 3 chr5 49542601 49542892 -153542640 - AluSx SINE Alu -22 290 1 10094 169 66 100 chr5 49542892 49544113 -153541419 - LTR49-int LTR ERV1 -2127 4204 1706 24 67 0 0 chr5 49545068 49545113 -153540419 + AT_rich Low_complexity Low_complexity 1 45 0 862 208 121 42 chr5 49545144 49545433 -153540099 - LTR49-int LTR ERV1 -5043 1288 977 1635 181 92 87 chr5 49545731 49546274 -153539258 - LTR49 LTR ERV1 -49 546 1 2322 168 15 8 chr5 49546426 49546819 -153538713 - MER61B LTR ERV1 -29 396 1 21045 114 24 11 chr5 49546819 49550016 -153535516 - MER61B-int LTR ERV1 0 5217 1978 1722 109 18 4 chr5 49550001 49550277 -153535255 - MER61B-int LTR ERV1 -3577 1640 1361 * 270 128 0 0 chr5 49550270 49550309 -153535223 - HUERS-P3b LTR ERV1 -3996 3422 3384 * 1910 111 102 50 chr5 49550306 49550668 -153534864 - HUERS-P3b LTR ERV1 -4370 847 467 296 256 44 22 chr5 49551069 49551159 -153534373 - HUERS-P3b LTR ERV1 -5125 92 1 2447 144 10 10 chr5 49551172 49551567 -153533965 - MER61B LTR ERV1 -30 395 1 1368 265 99 14 chr5 49551569 49551991 -153533541 + MER39 LTR ERV1 250 707 0 231 250 56 14 chr5 49552022 49552094 -153533438 + MIR3 SINE MIR 83 157 -51 308 280 27 0 chr5 49552560 49552635 -153532897 + MER91C DNA MER1_type 1 77 -63 2502 169 35 11 chr5 49552850 49553387 -153532145 - L1MA10 LINE L1 -2 6332 5783 358 304 34 83 chr5 49553811 49554077 -153531455 + MIR SINE MIR 9 261 -1 389 275 48 21 chr5 49554394 49554583 -153530949 - L1ME1 LINE L1 -5 6161 5968 704 202 108 9 chr5 49554628 49554851 -153530681 - L1M4 LINE L1 -3699 2945 2701 5367 136 11 0 chr5 49554852 49555955 -153529577 - L1PA15 LINE L1 -1 6815 5700 13039 256 52 13 chr5 49555957 49556640 -153528892 - L1PA15 LINE L1 -1241 5556 4901 1872 148 7 3 chr5 49556640 49556946 -153528586 + AluSx SINE Alu 1 307 0 13039 256 52 13 chr5 49556946 49559807 -153525725 - L1PA15 LINE L1 -1896 4901 2154 2190 85 3 60 chr5 49559807 49560126 -153525406 + AluSp SINE Alu 1 301 -12 13039 256 52 13 chr5 49560126 49560547 -153524985 - L1PA15 LINE L1 -4643 2154 1751 269 26 26 0 chr5 49560547 49560585 -153524947 + (CAG)n Simple_repeat Simple_repeat 1 39 0 13039 256 52 13 chr5 49560585 49561673 -153523859 - L1PA15 LINE L1 -5046 1751 1 358 283 78 51 chr5 49561865 49562338 -153523194 - L1M4 LINE L1 -4135 2690 2205 1159 288 100 30 chr5 49562381 49563379 -153522153 - L1M4 LINE L1 -4715 1931 875 2308 92 0 0 chr5 49563380 49563700 -153521832 - AluY SINE Alu 0 320 1 1827 179 74 12 chr5 49564115 49564533 -153520999 - LTR56 LTR ERV1 0 445 2 7542 197 49 43 chr5 49564661 49565273 -153520259 - LTR56-int LTR ERV1 -265 6146 5539 2200 127 47 8 chr5 49565273 49565634 -153519898 - THE1C LTR MaLR 0 375 1 7542 197 49 43 chr5 49565634 49567343 -153518189 - LTR56-int LTR ERV1 -872 5539 2191 1180 268 12 0 chr5 49567384 49567638 -153517894 - AluJo SINE Alu -55 257 1 6321 199 52 61 chr5 49567646 49568573 -153516959 - LTR49-int LTR ERV1 -2736 3595 2690 1988 137 7 7 chr5 49568573 49568872 -153516660 + AluSx SINE Alu 1 299 -13 6321 199 52 61 chr5 49568872 49569676 -153515856 - LTR49-int LTR ERV1 -3641 2690 1880 1580 145 19 54 chr5 49569673 49569990 -153515542 - LTR49-int LTR ERV1 -4673 1658 1353 * 341 188 40 40 chr5 49570095 49570196 -153515336 - LTR49-int LTR ERV1 -4949 1382 1282 376 242 0 0 chr5 49570198 49570264 -153515268 - tRNA-Glu-GAG tRNA tRNA -3 72 7 301 190 17 0 chr5 49570323 49570381 -153515151 - LTR49-int LTR ERV1 -5150 1181 1123 669 101 0 10 chr5 49570541 49570640 -153514892 + MER4A LTR ERV1 1 98 -566 1701 134 158 78 chr5 49570640 49571014 -153514518 + MER4A LTR ERV1 261 664 0 4000 97 18 5 chr5 49571688 49572246 -153513286 + MER61E LTR ERV1 1 565 -4 2043 132 84 14 chr5 49572881 49573297 -153512235 - LTR56 LTR ERV1 0 445 1 2119 93 7 32 chr5 49573690 49574000 -153511532 + AluSc SINE Alu 1 302 -7 187 354 42 10 chr5 49574024 49574120 -153511412 + MIR SINE MIR 73 171 -91 22 0 0 0 chr5 49574995 49575017 -153510515 + AT_rich Low_complexity Low_complexity 1 22 0 645 99 0 11 chr5 49575331 49575422 -153510110 - MER41C LTR ERV1 -464 90 1 5334 86 51 4 chr5 49575658 49576403 -153509129 + LTR17 LTR ERV1 1 780 0 356 285 32 114 chr5 49576541 49576787 -153508745 - MIR SINE MIR 0 262 37 35 0 0 0 chr5 49577445 49577480 -153508052 + AT_rich Low_complexity Low_complexity 1 35 0 259 366 0 0 chr5 49577858 49577940 -153507592 - L2 LINE L2 -1 3271 3190 294 215 0 51 chr5 49578057 49578136 -153507396 + MIR3 SINE MIR 82 156 -52 29 47 0 0 chr5 49578420 49578463 -153507069 + AT_rich Low_complexity Low_complexity 1 43 0 602 186 97 0 chr5 49578507 49578620 -153506912 + FLAM_C SINE Alu 1 124 -19 200 390 0 0 chr5 49579582 49579659 -153505873 - L3 LINE CR1 -58 1519 1443 386 317 24 16 chr5 49579850 49579973 -153505559 - MIR SINE MIR -73 189 66 316 312 126 22 chr5 49580198 49580429 -153505103 + MIR SINE MIR 8 262 0 194 343 185 0 chr5 49580472 49580618 -153504914 - L3 LINE CR1 -340 1237 1065 279 301 201 30 chr5 49580773 49581102 -153504430 - L3 LINE CR1 -632 945 561 182 234 39 13 chr5 49582266 49582343 -153503189 + L3b LINE CR1 1113 1191 -392 233 267 67 0 chr5 49582351 49582426 -153503106 - MLT1G LTR MaLR -16 574 495 384 296 13 26 chr5 49582595 49582747 -153502785 - MLT1H LTR MaLR -380 169 20 2202 101 3 10 chr5 49583430 49583726 -153501806 - AluY SINE Alu -17 294 1 22 94 0 0 chr5 49584513 49584577 -153500955 + AT_rich Low_complexity Low_complexity 1 64 0 1110 243 241 109 chr5 49584803 49585768 -153499764 + MER52A LTR ERV1 663 1755 0 22 35 0 0 chr5 49585793 49585822 -153499710 + AT_rich Low_complexity Low_complexity 1 29 0 299 280 203 0 chr5 49585879 49585997 -153499535 - MIR SINE MIR -119 143 2 4524 172 51 7 chr5 49586391 49586458 -153499074 - MER6 DNA MER2_type 0 865 802 1337 133 55 0 chr5 49586458 49586676 -153498856 + MER30 DNA MER1_type 1 230 0 4524 172 51 7 chr5 49586676 49587435 -153498097 - MER6 DNA MER2_type -63 802 3 848 168 95 16 chr5 49593527 49593717 -153491815 + MER3 DNA MER1_type 1 205 -4 21 36 0 0 chr5 49595259 49595287 -153490245 + AT_rich Low_complexity Low_complexity 1 28 0 746 269 22 11 chr5 49595480 49595662 -153489870 - MIR SINE MIR -53 209 26 2473 141 91 6 chr5 49596030 49596757 -153488775 + LTR1B LTR ERV1 1 826 0 5318 211 40 65 chr5 49596812 49598099 -153487433 + MLT-int LTR MaLR 481 1735 0 1487 194 22 22 chr5 49598167 49598486 -153487046 - L1 LINE L1 -1812 4334 4016 182 262 24 0 chr5 49598950 49598992 -153486540 + L2 LINE L2 3221 3263 -9 2268 91 0 3 chr5 49600563 49600861 -153484671 + AluSc SINE Alu 1 297 -12 235 282 82 0 chr5 49600890 49600975 -153484557 + MIR SINE MIR 63 154 -108 245 200 120 13 chr5 49601114 49601189 -153484343 - MIR SINE MIR -85 177 95 376 289 63 59 chr5 49602487 49602726 -153482806 - Charlie8 DNA MER1_type -2177 240 1 24 32 0 0 chr5 49603161 49603192 -153482340 + AT_rich Low_complexity Low_complexity 1 31 0 191 232 134 98 chr5 49603229 49603341 -153482191 - MIR SINE MIR -82 180 65 238 356 87 0 chr5 49603658 49603773 -153481759 - MIR3 SINE MIR 0 208 84 24 0 0 0 chr5 49603808 49603832 -153481700 + AT_rich Low_complexity Low_complexity 1 24 0 1651 160 185 14 chr5 49603876 49604238 -153481294 + MSTA LTR MaLR 1 424 -4 247 288 162 9 chr5 49604666 49604777 -153480755 - MIR SINE MIR -77 185 58 277 373 112 12 chr5 49607734 49607903 -153477629 + MER5A DNA MER1_type 2 187 -2 240 295 74 11 chr5 49607998 49608093 -153477439 + L2 LINE L2 3191 3291 -22 425 292 136 40 chr5 49608739 49609040 -153476492 - L1ME4a LINE L1 -150 6389 6060 508 268 211 24 chr5 49609054 49609267 -153476265 - MIR SINE MIR 0 262 10 239 301 85 20 chr5 49609867 49610020 -153475512 - L1ME4a LINE L1 -1909 4655 4493 235 352 83 9 chr5 49610090 49610198 -153475334 - L2 LINE L2 -1 3312 3197 817 268 121 57 chr5 49610302 49610805 -153474727 - L1ME4a LINE L1 -2428 4136 3667 1939 179 0 0 chr5 49610805 49611117 -153474415 - AluJb SINE Alu 0 312 1 817 268 121 57 chr5 49611117 49611869 -153473663 - L1ME4a LINE L1 -2897 3667 2800 351 209 73 18 chr5 49611880 49611990 -153473542 + MER77 LTR ERV1 443 558 -47 434 220 82 82 chr5 49612002 49612161 -153473371 - MLT1D LTR MaLR -258 247 89 962 228 43 48 chr5 49612216 49613476 -153472056 - L1ME4a LINE L1 -5142 903 1 544 283 71 5 chr5 49613523 49613735 -153471797 - L1MEc LINE L1 -3400 3448 3223 * 1079 247 82 16 chr5 49613728 49614181 -153471351 - L1MEc LINE L1 -4160 2869 2387 2051 107 4 0 chr5 49614226 49614506 -153471026 - AluSc SINE Alu -28 281 1 237 250 133 39 chr5 49614508 49614636 -153470896 - L1MEc LINE L1 -4312 2537 2398 1177 150 34 39 chr5 49614776 49614983 -153470549 + AluJb SINE Alu 88 293 -19 566 297 116 7 chr5 49614983 49615407 -153470125 - L1MEc LINE L1 -5101 1747 1278 780 26 0 80 chr5 49615420 49615533 -153469999 - L1PA2 LINE L1 0 6155 6052 811 272 59 95 chr5 49616469 49617198 -153468334 - L1MC4 LINE L1 -3 8039 7236 5931 144 9 29 chr5 49617570 49618086 -153467446 - L1PB1 LINE L1 -5 6146 5621 4125 77 108 46 chr5 49618086 49618734 -153466798 + LTR12 LTR ERV1 1 688 0 5931 144 9 29 chr5 49618734 49619805 -153465727 - L1PB1 LINE L1 -530 5621 4597 288 126 39 48 chr5 49619931 49620034 -153465498 + GA-rich Low_complexity Low_complexity 1 102 0 341 301 28 42 chr5 49620393 49620536 -153464996 - MARNA DNA Mariner -203 383 243 1733 176 0 16 chr5 49620932 49621239 -153464293 - AluJo SINE Alu -10 302 1 296 290 84 38 chr5 49621339 49621470 -153464062 - L2 LINE L2 -5 3308 3172 250 241 11 35 chr5 49621602 49621689 -153463843 - MIR3 SINE MIR -15 193 109 700 297 53 58 chr5 49621826 49621872 -153463660 - LTR16C LTR ERVL -14 477 432 1552 170 50 18 chr5 49621872 49622154 -153463378 - AluJo SINE Alu -21 291 1 700 297 53 58 chr5 49622154 49622487 -153463045 - LTR16C LTR ERVL -59 432 100 199 77 26 26 chr5 49623196 49623235 -153462297 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 207 174 0 145 chr5 49623590 49623659 -153461873 + MIR3 SINE MIR 108 166 -42 26 50 0 0 chr5 49624813 49624853 -153460679 + AT_rich Low_complexity Low_complexity 1 40 0 2258 65 41 3 chr5 49625318 49625612 -153459920 + AluY SINE Alu 1 305 -6 365 282 101 34 chr5 49625635 49625784 -153459748 - MIR3 SINE MIR -41 167 9 192 336 124 9 chr5 49628747 49628860 -153456672 + L2 LINE L2 3107 3232 -40 428 314 92 0 chr5 49629307 49629460 -153456072 + MIR3 SINE MIR 36 202 -6 194 250 44 15 chr5 49629569 49629637 -153455895 - MIR3 SINE MIR -29 179 110 251 322 70 35 chr5 49629978 49630093 -153455439 + L3 LINE CR1 25 143 -1434 301 303 30 10 chr5 49630253 49630352 -153455180 - MIR3 SINE MIR -5 203 103 2541 149 31 2 chr5 49631138 49631554 -153453978 + MSTC LTR MaLR 1 428 0 6235 87 19 8 chr5 49632220 49633335 -153452197 + L1PA10 LINE L1 5067 6167 -1 254 143 20 0 chr5 49634654 49634703 -153450829 + CT-rich Low_complexity Low_complexity 2 51 0 351 0 0 0 chr5 49634704 49634743 -153450789 + (TG)n Simple_repeat Simple_repeat 2 40 0 219 83 0 28 chr5 49634788 49634824 -153450708 + MER5B DNA MER1_type 64 98 -80 2016 108 20 7 chr5 49634966 49635262 -153450270 - AluSq SINE Alu -13 300 1 1779 300 57 63 chr5 49635327 49636313 -153449219 + L2 LINE L2 674 1653 -1661 5069 197 50 27 chr5 49686316 49687630 -153397902 + L1PA13 LINE L1 1239 2585 -4212 180 0 0 0 chr5 49687731 49687751 -153397781 + (A)n Simple_repeat Simple_repeat 1 20 0 21 57 0 0 chr5 49688126 49688161 -153397371 + AT_rich Low_complexity Low_complexity 1 35 0 1355 79 28 28 chr5 49688679 49688895 -153396637 + AluY SINE Alu 1 216 -95 344 303 144 35 chr5 49689369 49689653 -153395879 + L1MC/D LINE L1 5254 5568 -2240 1856 153 14 0 chr5 49689653 49689969 -153395563 - AluSq SINE Alu 0 320 1 5488 132 19 9 chr5 49689994 49690893 -153394639 - L1PA13 LINE L1 -2 6161 5254 935 249 20 0 chr5 49691147 49691348 -153394184 + MER58A DNA MER1_type 2 206 -18 215 392 0 13 chr5 49691447 49691526 -153394006 - MIR SINE MIR -183 79 2 1448 266 62 18 chr5 49693411 49693863 -153391669 + LTR40a LTR ERVL 1 472 -47 180 0 0 0 chr5 49694287 49694307 -153391225 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1142 112 0 6 chr5 49694822 49694883 -153390649 + (GAAA)n Simple_repeat Simple_repeat 1 238 0 1142 112 0 6 chr5 49694883 49695062 -153390470 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 2050 123 0 13 chr5 49695350 49695651 -153389881 + AluSx SINE Alu 5 301 -11 195 162 0 0 chr5 49695985 49696022 -153389510 + (TCCA)n Simple_repeat Simple_repeat 4 40 0 251 269 0 43 chr5 49696262 49696305 -153389227 - MIR SINE MIR -66 196 153 1308 189 35 62 chr5 49696305 49696589 -153388943 - MLT1A1 LTR MaLR -2 363 90 1622 168 42 0 chr5 49696589 49696874 -153388658 - AluJb SINE Alu -15 297 1 1308 189 35 62 chr5 49696874 49696960 -153388572 - MLT1A1 LTR MaLR -275 90 3 251 269 0 43 chr5 49696960 49697009 -153388523 - MIR SINE MIR -109 153 108 21 57 0 0 chr5 49698683 49698718 -153386814 + AT_rich Low_complexity Low_complexity 1 35 0 4548 143 52 13 chr5 49699758 49700553 -153384979 + LTR1B LTR ERV1 1 826 0 355 339 87 10 chr5 49700857 49701052 -153384480 + MIR SINE MIR 11 220 -42 191 336 0 37 chr5 49701133 49701240 -153384292 + L2 LINE L2 1948 2050 -1264 2526 83 0 83 chr5 49701243 49701654 -153383878 - MER51B LTR ERV1 0 377 1 566 317 151 8 chr5 49701657 49701916 -153383616 + L2 LINE L2 2679 2974 -340 877 190 4 106 chr5 49701968 49702194 -153383338 - MER20 DNA MER1_type 0 219 17 222 366 30 38 chr5 49702591 49702722 -153382810 - L2 LINE L2 -7 3265 3136 1379 152 89 28 chr5 49702924 49703446 -153382086 + LTR36 LTR ERV1 2 611 0 201 176 0 0 chr5 49703447 49703481 -153382051 + (TA)n Simple_repeat Simple_repeat 2 35 0 545 252 81 0 chr5 49703785 49703908 -153381624 - MER58A DNA MER1_type 0 133 1 31 0 0 0 chr5 49705548 49705579 -153379953 + AT_rich Low_complexity Low_complexity 1 31 0 926 238 47 49 chr5 49706230 49706637 -153378895 + L1M4 LINE L1 4909 5314 -832 1650 271 61 63 chr5 49706654 49707322 -153378210 + L1MC4 LINE L1 6800 7467 -575 5788 103 40 0 chr5 49707322 49708253 -153377279 - L1PB1 LINE L1 0 6151 5222 1650 271 61 63 chr5 49708253 49708388 -153377144 + L1MC4 LINE L1 7467 7601 -441 619 292 82 34 chr5 49708636 49709518 -153376014 + L1ME LINE L1 548 1483 -4597 2185 221 62 113 chr5 49709530 49710826 -153374706 + L1M4 LINE L1 3477 4706 -1440 333 327 193 0 chr5 49711280 49711430 -153374102 - MER5A DNA MER1_type -1 188 10 866 198 97 0 chr5 49713585 49713812 -153371720 + L1MCa LINE L1 1266 1514 -4912 1536 115 47 24 chr5 49713832 49714085 -153371447 + MER1B DNA MER1_type 80 338 -1 787 314 68 28 chr5 49714087 49714650 -153370882 + L1MCa LINE L1 1697 2281 -4326 311 275 0 0 chr5 49714741 49714810 -153370722 - LTR16B LTR ERVL -395 69 1 208 304 0 0 chr5 49714813 49714869 -153370663 + (TG)n Simple_repeat Simple_repeat 1 56 0 229 278 56 44 chr5 49714940 49715030 -153370502 + L2 LINE L2 3191 3281 -32 652 159 16 8 chr5 49715049 49715175 -153370357 + L1MB8 LINE L1 6051 6177 -1 2011 121 7 0 chr5 49715583 49715863 -153369669 - AluSx SINE Alu -30 282 1 21 36 0 0 chr5 49717532 49717560 -153367972 + AT_rich Low_complexity Low_complexity 1 28 0 300 299 85 37 chr5 49717771 49718151 -153367381 - L2 LINE L2 -1078 2236 1867 317 299 124 34 chr5 49718870 49719047 -153366485 + MIR SINE MIR 14 206 -56 1218 244 76 15 chr5 49720445 49720804 -153364728 - MLT1E2 LTR MaLR 0 626 206 1911 222 22 10 chr5 49720804 49721468 -153364064 + MER49 LTR ERV1 1 923 0 695 262 93 13 chr5 49721502 49721727 -153363805 - MLT1E2 LTR MaLR -401 253 11 25 0 0 0 chr5 49721736 49721761 -153363771 + AT_rich Low_complexity Low_complexity 1 25 0 2064 160 10 0 chr5 49722155 49722467 -153363065 + 7SLRNA srpRNA srpRNA 2 316 -4 536 136 17 17 chr5 49722470 49722588 -153362944 + GA-rich Low_complexity Low_complexity 4 121 0 263 114 68 0 chr5 49722711 49722755 -153362777 - L1P LINE L1 -969 5177 5131 * 3035 181 32 5 chr5 49722752 49723349 -153362183 + L1P LINE L1 4482 5094 -1052 571 316 51 12 chr5 49723364 49723617 -153361915 + L1MC4a LINE L1 5594 5856 -1952 243 188 71 82 chr5 49724125 49724191 -153361341 - MER103 DNA DNA -64 102 36 1964 175 24 19 chr5 49724191 49724563 -153360969 - THE1C LTR MaLR 0 375 2 243 188 71 82 chr5 49724563 49724581 -153360951 - MER103 DNA DNA -130 36 19 1206 256 97 72 chr5 49726489 49727332 -153358200 + L1ME3A LINE L1 5254 6117 -53 28 71 0 0 chr5 49727381 49727437 -153358095 + AT_rich Low_complexity Low_complexity 1 56 0 282 106 0 0 chr5 49727983 49728030 -153357502 + (TC)n Simple_repeat Simple_repeat 1 47 0 23 0 0 0 chr5 49728317 49728340 -153357192 + AT_rich Low_complexity Low_complexity 1 23 0 803 224 113 14 chr5 49729107 49729407 -153356125 - MLT1A2 LTR MaLR 0 374 1 203 179 0 0 chr5 49730035 49730074 -153355458 + A-rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr5 49730415 49730446 -153355086 + AT_rich Low_complexity Low_complexity 1 31 0 4637 94 5 81 chr5 49730592 49731380 -153354152 - L1PA14 LINE L1 0 6161 5434 23 0 0 0 chr5 49732001 49732024 -153353508 + AT_rich Low_complexity Low_complexity 1 23 0 1175 195 52 57 chr5 49733643 49734012 -153351520 - L1MA9 LINE L1 -44 6268 5902 27 0 0 0 chr5 49736491 49736518 -153349014 + AT_rich Low_complexity Low_complexity 1 27 0 2587 103 11 0 chr5 49736724 49737084 -153348448 + THE1B LTR MaLR 1 364 0 3922 188 53 3 chr5 49737245 49737959 -153347573 + MER21B LTR ERV1 1 750 -113 1465 202 183 16 chr5 49738301 49738732 -153346800 + MLT1D LTR MaLR 1 503 -2 283 264 42 28 chr5 49739352 49739452 -153346080 + MLT1H1 LTR MaLR 149 324 -271 452 205 113 8 chr5 49739586 49739736 -153345796 + MLT1H1 LTR MaLR 375 555 0 247 308 9 19 chr5 49739736 49739843 -153345689 + MLT1H1-int LTR MaLR 1 106 -1629 35445 34 2 6 chr5 49739873 49744858 -153340674 + L1PA4 LINE L1 1011 5976 -179 304 266 89 65 chr5 49745228 49745397 -153340135 + MLT1H LTR MaLR 360 532 -17 1875 127 71 0 chr5 49746151 49746434 -153339098 - AluSg1 SINE Alu -4 305 3 535 253 158 6 chr5 49746727 49746885 -153338647 - MER5A DNA MER1_type -1 188 7 22 0 0 0 chr5 49747345 49747367 -153338165 + AT_rich Low_complexity Low_complexity 1 22 0 1917 130 81 26 chr5 49747629 49747974 -153337558 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr5 49748021 49748044 -153337488 + AT_rich Low_complexity Low_complexity 1 23 0 196 153 51 29 chr5 49752028 49752165 -153333367 + (TA)n Simple_repeat Simple_repeat 2 141 0 1934 89 0 4 chr5 49752170 49752417 -153333115 - AluSc SINE Alu -63 246 1 228 289 0 0 chr5 49752504 49752556 -153332976 + (CA)n Simple_repeat Simple_repeat 1 52 0 660 297 136 39 chr5 49752662 49753022 -153332510 + L3 LINE CR1 1021 1415 -162 298 340 28 35 chr5 49753035 49753176 -153332356 - MIR3 SINE MIR -11 197 58 21 36 0 0 chr5 49754040 49754068 -153331464 + AT_rich Low_complexity Low_complexity 1 28 0 6691 130 29 10 chr5 49754422 49755762 -153329770 - L1MA2 LINE L1 0 6304 4932 674 298 32 20 chr5 49755988 49756236 -153329296 - MIR SINE MIR 0 262 12 21 0 0 0 chr5 49756640 49756661 -153328871 + AT_rich Low_complexity Low_complexity 1 21 0 198 191 0 0 chr5 49756697 49756739 -153328793 + (TG)n Simple_repeat Simple_repeat 1 42 0 654 273 97 33 chr5 49757146 49758018 -153327514 + L1ME1 LINE L1 4933 5947 -219 197 289 178 20 chr5 49758326 49758478 -153327054 + L2 LINE L2 2637 2812 -502 2103 102 0 4 chr5 49758750 49759024 -153326508 + AluSq SINE Alu 4 276 -37 229 103 51 64 chr5 49759028 49759106 -153326426 + GA-rich Low_complexity Low_complexity 2 78 0 474 308 174 4 chr5 49759127 49759403 -153326129 - L1ME4a LINE L1 -50 6071 5749 401 125 11 0 chr5 49759407 49759495 -153326037 + (TA)n Simple_repeat Simple_repeat 1 89 0 324 0 0 0 chr5 49759887 49759923 -153325609 + (TG)n Simple_repeat Simple_repeat 2 37 0 396 236 73 45 chr5 49760731 49760909 -153324623 + MER96B DNA MER1_type? 230 412 -5 211 341 153 18 chr5 49761411 49761634 -153323898 + L3 LINE CR1 714 966 -611 1909 250 21 5 chr5 49761684 49762170 -153323362 - MER77 LTR ERV1 0 605 56 201 74 0 0 chr5 49762170 49762197 -153323335 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1909 250 21 5 chr5 49762197 49762254 -153323278 - MER77 LTR ERV1 -549 56 1 385 269 128 20 chr5 49762254 49762399 -153323133 - MLT1L LTR MaLR -120 495 335 322 287 53 47 chr5 49762492 49762642 -153322890 - MLT1L LTR MaLR -464 151 1 458 252 7 56 chr5 49763238 49763313 -153322219 - MIR SINE MIR -126 136 70 4156 122 8 6 chr5 49763313 49763947 -153321585 - MER41B LTR ERV1 0 635 1 458 252 7 56 chr5 49763947 49764014 -153321518 - MIR SINE MIR -192 70 1 2050 133 3 0 chr5 49764110 49764404 -153321128 - AluSq SINE Alu -18 295 1 488 133 48 0 chr5 49764516 49764599 -153320933 - MER34C LTR ERV1 0 585 499 619 141 0 10 chr5 49764599 49764698 -153320834 + MER4A LTR ERV1 1 98 -566 * 924 164 27 25 chr5 49764694 49764922 -153320610 + MER4A LTR ERV1 257 543 -121 3393 138 34 2 chr5 49764924 49765460 -153320072 - MER41C LTR ERV1 -1 553 1 12426 112 29 6 chr5 49765460 49767696 -153317836 - MER41C-int LTR ERV1 0 5946 2856 2013 142 54 37 chr5 49767683 49768265 -153317267 - MER41-int LTR ERV1 -4057 3759 1081 * 599 133 124 9 chr5 49768256 49768369 -153317163 - MER41-int LTR ERV1 -5321 625 500 * 3603 115 0 2 chr5 49768369 49768881 -153316651 + MER9 LTR ERVK 1 511 0 4254 76 5 24 chr5 49768881 49769460 -153316072 + HERVK9 LTR ERVK 1 568 -5348 13516 62 1 1 chr5 49769461 49771136 -153314396 + HERVK9 LTR ERVK 1113 2786 -3130 1806 61 4 0 chr5 49771136 49771366 -153314166 + HERVK9 LTR ERVK 3711 3941 -1975 * 7564 98 3 16 chr5 49771353 49772431 -153313101 + HERVK9 LTR ERVK 4571 5634 -282 2248 126 13 12 chr5 49772456 49772809 -153312723 + HERVK9 LTR ERVK 5635 5916 0 3685 94 4 6 chr5 49772809 49773321 -153312211 + MER9 LTR ERVK 1 511 0 315 118 20 0 chr5 49773321 49773372 -153312160 - MER41-int LTR ERV1 -5441 505 454 865 129 17 17 chr5 49773496 49773674 -153311858 + GA-rich Low_complexity Low_complexity 3 180 0 919 207 6 0 chr5 49774892 49775061 -153310471 + AluJo SINE Alu 113 282 -30 23 0 0 0 chr5 49775061 49775084 -153310448 + AT_rich Low_complexity Low_complexity 1 23 0 360 269 50 42 chr5 49775155 49775274 -153310258 - MIR SINE MIR -123 139 20 396 0 0 0 chr5 49775965 49776009 -153309523 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 947 104 8 0 chr5 49776009 49776134 -153309398 - AluSg SINE Alu -184 126 1 449 265 77 33 chr5 49776640 49776821 -153308711 - LTR67 LTR ERVL -15 542 354 507 345 98 23 chr5 49777416 49777976 -153307556 - ERVL LTR ERVL -2973 2791 2190 279 0 0 0 chr5 49779173 49779204 -153306328 + (TG)n Simple_repeat Simple_repeat 2 32 0 243 204 0 0 chr5 49779534 49779588 -153305944 + (TA)n Simple_repeat Simple_repeat 1 54 0 1432 149 97 45 chr5 49779641 49779929 -153305603 + AluJo SINE Alu 1 303 -9 2090 110 13 20 chr5 49782676 49782975 -153302557 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr5 49783025 49783055 -153302477 + AT_rich Low_complexity Low_complexity 1 30 0 2039 108 49 0 chr5 49785527 49785813 -153299719 + AluSg SINE Alu 1 300 -10 30 0 0 0 chr5 49785860 49785890 -153299642 + AT_rich Low_complexity Low_complexity 1 30 0 4078 188 34 17 chr5 49786058 49786826 -153298706 - LTR39 LTR ERV1 -2 781 1 262 331 57 100 chr5 49786870 49787151 -153298381 - L2 LINE L2 0 3272 3004 22 0 0 0 chr5 49787194 49787216 -153298316 + AT_rich Low_complexity Low_complexity 1 22 0 6878 72 0 0 chr5 49787371 49787401 -153298131 - L1PA8 LINE L1 -3 6169 6140 8312 51 1 0 chr5 49787401 49788366 -153297166 - LTR5 LTR ERVK -3 966 1 6878 72 0 0 chr5 49788366 49789378 -153296154 - L1PA8 LINE L1 -31 6141 5137 2839 109 2 0 chr5 49789378 49789799 -153295733 + L1PA8 LINE L1 4716 5137 -1009 194 208 21 21 chr5 49789840 49789888 -153295644 + MIR SINE MIR 95 142 -120 2206 110 0 10 chr5 49790450 49790751 -153294781 + AluSq SINE Alu 1 298 -15 624 153 0 16 chr5 49791755 49791938 -153293594 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 36 0 0 chr5 49792040 49792068 -153293464 + AT_rich Low_complexity Low_complexity 1 28 0 434 200 21 0 chr5 49792132 49792227 -153293305 - MLT1F LTR MaLR -2 540 444 314 182 56 14 chr5 49792230 49792373 -153293159 + (TA)n Simple_repeat Simple_repeat 1 149 0 780 299 74 0 chr5 49792638 49792882 -153292650 - LTR16C LTR ERVL -5 486 225 316 262 154 5 chr5 49793240 49793461 -153292071 + L1M4 LINE L1 3697 3950 -2196 971 237 19 0 chr5 49793551 49793758 -153291774 - MLT1F1 LTR MaLR -2 565 355 216 67 0 0 chr5 49793814 49793844 -153291688 + (CA)n Simple_repeat Simple_repeat 1 30 0 1452 136 33 16 chr5 49794168 49794411 -153291121 - MER41C-int LTR ERV1 -5698 248 2 3087 143 55 0 chr5 49794497 49795022 -153290510 - MER41C LTR ERV1 0 554 1 799 151 0 16 chr5 49795022 49795148 -153290384 + MER4A LTR ERV1 541 664 0 2019 158 98 60 chr5 49795148 49795629 -153289903 - MER34C LTR ERV1 -83 502 4 2266 210 24 25 chr5 49795964 49796474 -153289058 - LTR22 LTR ERVK 0 509 1 29 47 0 0 chr5 49796640 49796683 -153288849 + AT_rich Low_complexity Low_complexity 1 43 0 2008 197 66 32 chr5 49798219 49798731 -153286801 + MER41B LTR ERV1 108 477 -9 325 274 72 91 chr5 49799090 49799181 -153286351 + L1ME LINE L1 5299 5390 -772 2167 141 0 35 chr5 49799181 49799529 -153286003 + MER1B DNA MER1_type 2 337 0 325 274 72 91 chr5 49799529 49799700 -153285832 + L1ME LINE L1 5390 5556 -606 1955 169 0 3 chr5 49799797 49800093 -153285439 - AluSx SINE Alu -17 295 1 1415 202 16 0 chr5 49800869 49801122 -153284410 + AluJo SINE Alu 5 261 -51 201 74 0 0 chr5 49801186 49801213 -153284319 + (TC)n Simple_repeat Simple_repeat 2 28 0 199 111 22 22 chr5 49801212 49801257 -153284275 + (TA)n Simple_repeat Simple_repeat 2 46 0 * 263 261 134 25 chr5 49803572 49803691 -153281841 + MIR SINE MIR 20 151 -111 261 286 14 0 chr5 49803776 49803846 -153281686 - MIR SINE MIR -53 209 139 472 189 60 58 chr5 49804045 49804319 -153281213 - MER20B DNA MER1_type -5 778 474 1806 189 34 5 chr5 49804394 49804781 -153280751 - L1MD1 LINE L1 0 6242 5845 676 154 56 28 chr5 49804796 49804939 -153280593 - L1MD1 LINE L1 -590 5769 5623 513 285 55 32 chr5 49804943 49805316 -153280216 - L1MD1 LINE L1 -1005 5141 4640 193 242 0 137 chr5 49805330 49805454 -153280078 + MIR SINE MIR 137 243 -19 762 292 72 36 chr5 49805945 49806250 -153279282 + L2 LINE L2 2996 3311 -2 916 305 78 41 chr5 49806586 49806730 -153278802 + L2 LINE L2 2545 2682 -631 1237 241 65 17 chr5 49806730 49807083 -153278449 + MLT1A2 LTR MaLR 1 370 -4 916 305 78 41 chr5 49807083 49807678 -153277854 + L2 LINE L2 2682 3308 -5 322 245 168 42 chr5 49807678 49807821 -153277711 + MIR3 SINE MIR 28 188 -20 195 379 136 0 chr5 49808569 49808672 -153276860 - L2 LINE L2 -10 3262 3146 231 114 0 0 chr5 49809730 49809765 -153275767 + (CCCGAA)n Simple_repeat Simple_repeat 4 38 0 385 344 28 56 chr5 49810498 49810713 -153274819 - MIR SINE MIR -4 258 50 23 0 0 0 chr5 49810787 49810810 -153274722 + AT_rich Low_complexity Low_complexity 1 23 0 953 207 15 10 chr5 49811983 49812181 -153273351 - MER58A DNA MER1_type 0 224 26 669 286 105 70 chr5 49814087 49814612 -153270920 - L2 LINE L2 -1 3312 2764 1889 157 0 3 chr5 49815938 49816237 -153269295 + AluSx SINE Alu 1 298 -14 264 302 93 0 chr5 49816448 49816534 -153268998 + L2 LINE L2 3217 3310 -3 2155 109 10 16 chr5 49816602 49816905 -153268627 - AluSp SINE Alu -12 301 1 607 331 93 22 chr5 49817151 49817507 -153268025 + L2 LINE L2 1844 2224 -1090 1930 205 14 6 chr5 49817949 49818305 -153267227 + MLT1A1 LTR MaLR 7 365 0 576 244 57 52 chr5 49819524 49819717 -153265815 + Charlie8 DNA MER1_type 72 265 -2152 1676 139 68 7 chr5 49820111 49820391 -153265141 - AluSx SINE Alu -15 297 1 1178 233 157 6 chr5 49821471 49821789 -153263743 - MLT1E LTR MaLR 0 593 228 1636 185 101 65 chr5 49822391 49822855 -153262677 + LTR42 LTR ERVL 15 495 0 260 331 72 22 chr5 49824298 49824437 -153261095 + MIR3 SINE MIR 37 182 -26 392 358 86 8 chr5 49824660 49824903 -153260629 - L3 LINE CR1 -2 1575 1314 9648 38 19 1 chr5 49824905 49826873 -153258659 - L1PA4 LINE L1 -3 6152 4166 257 283 98 33 chr5 49827234 49827326 -153258206 - MIR SINE MIR -8 254 157 401 313 56 28 chr5 49828360 49828504 -153257028 - MIR3 SINE MIR -44 164 17 1912 230 44 29 chr5 49829607 49830060 -153255472 - MLT1G LTR MaLR -116 474 15 508 340 118 22 chr5 49831833 49832248 -153253284 + L2 LINE L2 2245 2699 -615 189 0 0 0 chr5 49832427 49832448 -153253084 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 301 254 73 27 chr5 49832579 49832689 -153252843 + L2 LINE L2 3199 3313 0 406 321 36 36 chr5 49833224 49833389 -153252143 - L2 LINE L2 -1 3312 3148 2285 100 3 0 chr5 49834091 49834390 -153251142 + AluSx SINE Alu 3 302 -10 254 332 63 37 chr5 49835828 49836018 -153249514 - L3 LINE CR1 -891 686 492 219 316 38 75 chr5 49836172 49836305 -153249227 - MIR SINE MIR -109 153 26 24 53 0 0 chr5 49836334 49836372 -153249160 + AT_rich Low_complexity Low_complexity 1 38 0 310 279 23 0 chr5 49837287 49837373 -153248159 + MIR SINE MIR 126 213 -49 218 275 14 0 chr5 49837417 49837486 -153248046 - MIR SINE MIR -16 246 177 1908 136 72 31 chr5 49837787 49838147 -153247385 + THE1C LTR MaLR 1 375 0 9674 136 9 40 chr5 49838149 49839778 -153245754 + THE1C-int LTR MaLR 3 1580 0 1535 155 123 26 chr5 49839779 49840121 -153245411 + THE1C LTR MaLR 1 375 0 209 277 0 31 chr5 49840883 49840948 -153244584 + L2 LINE L2 3251 3313 0 219 114 0 0 chr5 49841003 49841038 -153244494 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 36 0 0 chr5 49841288 49841316 -153244216 + AT_rich Low_complexity Low_complexity 1 28 0 293 297 22 0 chr5 49841684 49841775 -153243757 + MIR SINE MIR 109 201 -61 190 245 0 41 chr5 49842023 49842072 -153243460 + L2 LINE L2 3006 3052 -261 304 151 8 67 chr5 49842664 49842783 -153242749 + (TATAA)n Simple_repeat Simple_repeat 5 116 0 227 260 118 41 chr5 49843176 49843345 -153242187 - L1ME LINE L1 -215 5906 5725 222 91 0 0 chr5 49843665 49843698 -153241834 + (TG)n Simple_repeat Simple_repeat 2 34 0 1954 131 0 3 chr5 49844019 49844349 -153241183 + AluSx SINE Alu 1 329 0 2253 110 10 0 chr5 49844952 49845260 -153240272 + AluSx SINE Alu 1 311 -1 240 316 67 67 chr5 49845722 49845931 -153239601 + L2 LINE L2 2138 2346 -968 261 253 91 40 chr5 49846421 49846520 -153239012 - L2 LINE L2 0 3313 3210 221 287 85 0 chr5 49846622 49846716 -153238816 - L2 LINE L2 -340 2932 2831 1452 152 125 27 chr5 49846840 49847137 -153238395 - MER1B DNA MER1_type -1 338 13 22 0 0 0 chr5 49848571 49848593 -153236939 + AT_rich Low_complexity Low_complexity 1 22 0 1997 113 43 0 chr5 49849130 49849412 -153236120 + AluSx SINE Alu 2 295 -17 321 300 67 20 chr5 49851051 49851201 -153234331 - L1ME4a LINE L1 -5 6116 5960 22 0 0 0 chr5 49851396 49851418 -153234114 + AT_rich Low_complexity Low_complexity 1 22 0 287 314 0 0 chr5 49852240 49852326 -153233206 + CT-rich Low_complexity Low_complexity 5 90 0 2448 130 8 3 chr5 49852468 49852830 -153232702 - THE1B LTR MaLR 0 364 1 565 306 121 34 chr5 49854366 49854889 -153230643 - L1MEd LINE L1 -3379 2750 2183 270 263 77 32 chr5 49854946 49855102 -153230430 - L1MEd LINE L1 -4969 1150 988 1223 245 17 3 chr5 49855366 49855668 -153229864 - AluJo SINE Alu -6 306 1 710 62 21 0 chr5 49855701 49855821 -153229711 - AluSc SINE Alu 0 304 183 847 239 5 0 chr5 49856431 49856636 -153228896 - MER3 DNA MER1_type -2 207 2 246 59 0 0 chr5 49856743 49856777 -153228755 - L1P LINE L1 -2809 3337 3304 7376 40 1 0 chr5 49856778 49857698 -153227834 + L1PA4 LINE L1 5234 6154 -1 317 350 8 0 chr5 49857842 49857959 -153227573 + MIR SINE MIR 32 149 -113 2124 115 3 3 chr5 49858058 49858353 -153227179 - AluSp SINE Alu -18 295 1 201 374 13 39 chr5 49859451 49859606 -153225926 + L2 LINE L2 2491 2641 -673 194 323 43 43 chr5 49859611 49859704 -153225828 - L2 LINE L2 -38 3275 3183 281 340 27 53 chr5 49859774 49859962 -153225570 + MER5A DNA MER1_type 7 189 0 2107 122 3 0 chr5 49960384 49960704 -153124828 - Harlequin LTR ERV1 -6575 321 1 3426 101 0 14 chr5 49960704 49961199 -153124333 - LTR2B LTR ERV1 0 490 3 1188 35 7 0 chr5 49961201 49961344 -153124188 + LTR2B LTR ERV1 345 488 -2 292 231 31 0 chr5 49961346 49961411 -153124121 - L1MEc LINE L1 -4389 2007 1941 1475 228 6 21 chr5 49961786 49962119 -153123413 + MLT1E2 LTR MaLR 299 626 0 541 86 95 6 chr5 49962290 49962627 -153122905 + (TA)n Simple_repeat Simple_repeat 1 366 0 1880 155 22 6 chr5 49962668 49963030 -153122502 + L1 LINE L1 3388 3755 -2391 273 172 0 0 chr5 49963039 49963103 -153122429 + (TA)n Simple_repeat Simple_repeat 2 65 0 210 37 0 0 chr5 49963157 49963184 -153122348 + (GA)n Simple_repeat Simple_repeat 2 28 0 534 170 13 0 chr5 49963224 49963329 -153122203 + L1P5 LINE L1 5566 5673 -483 293 50 136 0 chr5 49963329 49963469 -153122063 + (TA)n Simple_repeat Simple_repeat 2 160 0 * 490 94 28 66 chr5 49963445 49963626 -153121906 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 398 234 22 22 chr5 49963627 49963984 -153121548 + (TTATA)n Simple_repeat Simple_repeat 1 357 0 296 195 0 27 chr5 49963984 49964133 -153121399 + (TATAA)n Simple_repeat Simple_repeat 5 149 0 454 175 78 0 chr5 49964135 49964289 -153121243 + (TTATA)n Simple_repeat Simple_repeat 5 170 0 496 102 51 34 chr5 49964295 49964471 -153121061 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 306 93 112 0 chr5 49964457 49964618 -153120914 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 225 0 0 0 chr5 49964619 49964644 -153120888 + (GA)n Simple_repeat Simple_repeat 2 26 0 529 252 52 0 chr5 49964668 49964803 -153120729 + MLT1A1 LTR MaLR 178 319 -46 306 203 16 16 chr5 49965133 49965197 -153120335 - MER5B DNA MER1_type -114 64 1 180 286 22 33 chr5 49965207 49965298 -153120234 + L3 LINE CR1 1134 1223 -354 417 95 83 24 chr5 49965458 49965627 -153119905 + (TA)n Simple_repeat Simple_repeat 2 180 0 204 186 60 60 chr5 49965629 49965796 -153119736 + (TATG)n Simple_repeat Simple_repeat 3 169 0 363 133 75 40 chr5 49965937 49966110 -153119422 + (TA)n Simple_repeat Simple_repeat 1 179 0 430 82 74 21 chr5 49966137 49966530 -153119002 + (TA)n Simple_repeat Simple_repeat 1 413 0 46 0 0 0 chr5 49966530 49966576 -153118956 + AT_rich Low_complexity Low_complexity 1 46 0 356 253 11 39 chr5 49966580 49966762 -153118770 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 282 214 21 0 chr5 49966765 49966905 -153118627 + (TA)n Simple_repeat Simple_repeat 2 144 0 23 0 0 0 chr5 49966910 49966933 -153118599 + AT_rich Low_complexity Low_complexity 1 23 0 231 200 6 29 chr5 49966937 49967112 -153118420 + (TATATG)n Simple_repeat Simple_repeat 2 172 0 34 24 0 0 chr5 49967112 49967153 -153118379 + AT_rich Low_complexity Low_complexity 1 41 0 506 71 77 18 chr5 49967155 49967324 -153118208 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 549 91 50 34 chr5 49967310 49967657 -153117875 + (TTATA)n Simple_repeat Simple_repeat 1 352 0 232 241 54 9 chr5 49967663 49967775 -153117757 + (TA)n Simple_repeat Simple_repeat 1 117 0 2093 120 0 0 chr5 49967775 49968066 -153117466 - AluSg SINE Alu -19 291 1 602 198 30 30 chr5 49968071 49968238 -153117294 - L1P LINE L1 -2812 3334 3168 419 272 55 55 chr5 49968925 49969127 -153116405 - MIR3 SINE MIR -5 203 2 5602 40 1 0 chr5 49969503 49970184 -153115348 - L1PA5 LINE L1 -13 6141 5460 537 158 0 0 chr5 49970697 49970792 -153114740 + L1MB4 LINE L1 5995 6089 -91 1622 195 30 43 chr5 49970908 49971278 -153114254 - MLT1A1 LTR MaLR 0 365 1 234 149 0 0 chr5 49971446 49971493 -153114039 + L1MB3 LINE L1 6128 6174 -9 874 301 94 46 chr5 49972408 49973290 -153112242 + L2 LINE L2 2379 3313 0 221 329 99 31 chr5 49973416 49973577 -153111955 + L2 LINE L2 3142 3313 0 181 262 0 66 chr5 49973813 49973874 -153111658 + MIR3 SINE MIR 112 168 -40 299 354 23 8 chr5 49973937 49974067 -153111465 - MIR SINE MIR -124 138 7 1859 106 6 90 chr5 49974281 49974602 -153110930 + AluSx SINE Alu 1 294 -18 224 284 62 12 chr5 49975700 49975781 -153109751 + MIR SINE MIR 63 147 -115 23 0 0 0 chr5 49976080 49976103 -153109429 + AT_rich Low_complexity Low_complexity 1 23 0 1597 184 3 10 chr5 49977047 49977346 -153108186 - AluJo SINE Alu -15 297 1 3742 83 25 9 chr5 49977762 49978289 -153107243 + MER57-int LTR ERV1 320 854 -6042 1050 43 0 7 chr5 49978288 49978428 -153107104 + MER57-int LTR ERV1 1572 1710 -5186 * 2758 72 2 2 chr5 49978416 49978816 -153106716 + MER57-int LTR ERV1 2175 2574 -4322 * 3591 65 13 0 chr5 49978815 49979273 -153106259 + MER57-int LTR ERV1 3352 3815 -3081 640 298 143 8 chr5 49979286 49979538 -153105994 + MER57-int LTR ERV1 3 288 -7249 1101 180 117 47 chr5 49979913 49980350 -153105182 + MER57-int LTR ERV1 1069 1450 -336 1261 236 41 36 chr5 49980389 49980829 -153104703 + MER57-int LTR ERV1 1527 1968 -2968 3054 225 59 93 chr5 49980962 49982779 -153102753 + MER57-int LTR ERV1 2202 5821 -1498 995 250 44 114 chr5 49983102 49983514 -153102018 + MER57-int LTR ERV1 5825 6207 -1330 1567 310 86 39 chr5 49983975 49984847 -153100685 + MER57-int LTR ERV1 6232 7144 -393 822 214 217 114 chr5 49984847 49985207 -153100325 + MER57B LTR ERV1 1 397 -6 6869 223 43 60 chr5 49985226 49985756 -153099776 + L1MC1 LINE L1 2315 2853 -3760 189 0 0 0 chr5 49985756 49985777 -153099755 + (CAT)n Simple_repeat Simple_repeat 3 23 0 6869 223 43 60 chr5 49985777 49987570 -153097962 + L1MC1 LINE L1 2853 4675 -1938 1965 118 6 44 chr5 49987570 49987885 -153097647 + AluSc SINE Alu 1 303 -6 6869 223 43 60 chr5 49987885 49988138 -153097394 + L1MC1 LINE L1 4675 4931 -1682 297 68 0 0 chr5 49988138 49988182 -153097350 + (TA)n Simple_repeat Simple_repeat 1 44 0 6869 223 43 60 chr5 49988182 49989902 -153095630 + L1MC1 LINE L1 4931 6340 -273 1476 344 47 45 chr5 49989902 49990329 -153095203 - MSTA LTR MaLR 0 428 1 6869 223 43 60 chr5 49990329 49990599 -153094933 + L1MC1 LINE L1 6340 6613 0 269 275 38 12 chr5 49991131 49991211 -153094321 + MIR SINE MIR 75 156 -106 468 35 0 0 chr5 49991681 49991739 -153093793 + (TA)n Simple_repeat Simple_repeat 2 59 0 946 111 10 76 chr5 49991750 49991948 -153093584 - MER50 LTR ERV1 -64 670 486 196 263 53 53 chr5 49992792 49992849 -153092683 + MER5A DNA MER1_type 47 103 -86 259 280 175 35 chr5 49993373 49993516 -153092016 - L3 LINE CR1 -254 1323 1161 250 280 127 0 chr5 49993511 49993629 -153091903 - L2 LINE L2 -1 3312 3180 * 348 298 61 0 chr5 49993687 49993801 -153091731 - L3 LINE CR1 -550 1027 907 1761 128 0 15 chr5 49995367 49995632 -153089900 - AluSx SINE Alu -37 275 15 251 275 44 11 chr5 49995971 49996062 -153089470 - MLT1K LTR MaLR -7 581 488 2632 160 164 39 chr5 49996256 49997410 -153088122 + LTR12 LTR ERV1 18 714 0 796 280 100 38 chr5 49997538 49997877 -153087655 - MLT1H LTR MaLR 0 549 190 893 214 15 0 chr5 49997993 49998199 -153087333 - L1P LINE L1 -2990 3156 2948 22 0 0 0 chr5 49998730 49998752 -153086780 + AT_rich Low_complexity Low_complexity 1 22 0 588 342 102 7 chr5 49999764 50000059 -153085473 - L2 LINE L2 -427 2887 2565 926 273 101 21 chr5 50000060 50000437 -153085095 + L1ME1 LINE L1 5756 6162 -4 834 307 77 22 chr5 50000454 50000816 -153084716 - L2 LINE L2 -789 2525 2144 294 29 0 0 chr5 50003087 50003122 -153082410 + (CA)n Simple_repeat Simple_repeat 2 36 0 2827 184 14 12 chr5 50003514 50004096 -153081436 + L1PB4 LINE L1 5572 6154 -2 355 310 148 19 chr5 50004396 50004551 -153080981 + MER5A DNA MER1_type 8 182 -7 378 352 104 14 chr5 50004859 50005223 -153080309 - L2 LINE L2 -931 2383 1987 494 353 36 30 chr5 50005238 50005353 -153080179 - LTR16C LTR ERVL 0 491 378 2726 85 3 0 chr5 50005353 50005707 -153079825 - THE1A LTR MaLR 0 355 1 494 353 36 30 chr5 50005707 50005894 -153079638 - LTR16C LTR ERVL -113 378 187 460 97 39 10 chr5 50006117 50006220 -153079312 + (TA)n Simple_repeat Simple_repeat 2 107 0 311 337 80 11 chr5 50006282 50006469 -153079063 - L2 LINE L2 -1427 1887 1688 * 1007 243 22 2 chr5 50006466 50006696 -153078836 + MIR SINE MIR 6 235 -27 223 347 78 52 chr5 50006756 50007024 -153078508 - L2 LINE L2 -1758 1556 1282 345 24 0 0 chr5 50007101 50007143 -153078389 + (CA)n Simple_repeat Simple_repeat 2 43 0 24 32 0 0 chr5 50007480 50007511 -153078021 + AT_rich Low_complexity Low_complexity 1 31 0 1338 124 36 0 chr5 50007702 50007896 -153077636 + AluSx SINE Alu 28 228 -84 314 146 0 0 chr5 50007896 50007944 -153077588 + AluSq/x SINE Alu 85 132 -170 1507 156 49 35 chr5 50007946 50008259 -153077273 + AluSq SINE Alu 1 317 0 28 29 0 0 chr5 50008975 50009010 -153076522 + AT_rich Low_complexity Low_complexity 1 35 0 26 64 0 0 chr5 50009170 50009217 -153076315 + AT_rich Low_complexity Low_complexity 1 47 0 27 0 0 0 chr5 50009318 50009345 -153076187 + AT_rich Low_complexity Low_complexity 1 27 0 30 0 0 0 chr5 50009852 50009882 -153075650 + AT_rich Low_complexity Low_complexity 1 30 0 1970 150 110 69 chr5 50010130 50010649 -153074883 - LTR49 LTR ERV1 -55 540 1 281 310 69 46 chr5 50010649 50010910 -153074622 - L2 LINE L2 -586 2728 2462 2108 151 42 31 chr5 50011117 50011542 -153073990 - MSTB1 LTR MaLR -2 430 1 459 287 139 5 chr5 50011986 50012188 -153073344 + HAL1 LINE L1 1575 1803 -704 291 188 38 38 chr5 50012354 50012434 -153073098 + HAL1 LINE L1 2073 2152 -355 36 77 0 0 chr5 50012896 50012974 -153072558 + AT_rich Low_complexity Low_complexity 1 78 0 249 241 0 103 chr5 50013678 50013765 -153071767 + L2 LINE L2 2309 2386 -928 205 200 40 0 chr5 50013782 50013832 -153071700 + L2 LINE L2 3219 3270 -2 * 719 233 41 0 chr5 50013825 50013971 -153071561 - MER5A DNA MER1_type -37 152 1 205 394 24 0 chr5 50014084 50014211 -153071321 - MIR3 SINE MIR -1 207 78 183 306 20 0 chr5 50014763 50014812 -153070720 + MIR SINE MIR 28 77 -131 312 271 164 71 chr5 50015029 50015169 -153070363 - MER5A DNA MER1_type -3 186 34 43429 44 1 2 chr5 50016752 50022905 -153062627 - L1PA3 LINE L1 -3 6152 9 2180 145 3 3 chr5 50023055 50023393 -153062139 + THE1C LTR MaLR 33 370 -5 10152 119 27 7 chr5 50023398 50024946 -153060586 + THE1C-int LTR MaLR 1 1580 0 2488 122 3 11 chr5 50024946 50025324 -153060208 + THE1C LTR MaLR 1 375 0 35 0 0 0 chr5 50025406 50025441 -153060091 + AT_rich Low_complexity Low_complexity 1 35 0 313 400 75 17 chr5 50025722 50026202 -153059330 + L2 LINE L2 2446 2953 -361 1757 144 16 42 chr5 50026745 50027057 -153058475 + AluSx SINE Alu 1 304 -8 3919 168 35 102 chr5 50027062 50027523 -153058009 - HSMAR2 DNA Mariner -1 1301 811 808 201 14 0 chr5 50027523 50027667 -153057865 - AluJb SINE Alu -21 291 146 3919 168 35 102 chr5 50027667 50028177 -153057355 - HSMAR2 DNA Mariner -491 811 262 375 222 0 0 chr5 50028306 50028378 -153057154 + HSMAR2 DNA Mariner 261 332 -970 * 1381 163 21 0 chr5 50028372 50028612 -153056920 - HSMAR2 DNA Mariner -1053 249 5 2086 127 0 7 chr5 50029066 50029365 -153056167 + AluSq SINE Alu 1 297 -16 280 344 31 31 chr5 50029568 50029792 -153055740 + L2 LINE L2 2611 2834 -480 266 331 161 0 chr5 50030000 50030130 -153055402 + L2 LINE L2 3158 3308 -5 358 242 11 33 chr5 50030645 50030736 -153054796 + L2 LINE L2 3224 3312 -1 339 325 89 41 chr5 50031426 50031697 -153053835 + L2 LINE L2 2984 3267 -46 1929 162 11 58 chr5 50032270 50032652 -153052880 + MLT1A1 LTR MaLR 1 364 -1 722 259 42 5 chr5 50033387 50033576 -153051956 + MIR SINE MIR 53 248 -14 187 294 0 0 chr5 50034608 50034659 -153050873 - MIR SINE MIR -3 259 209 987 151 6 0 chr5 50035343 50035502 -153050030 + L1M1 LINE L1 5430 5589 -716 5685 132 5 3 chr5 50035502 50036708 -153048824 + L1MA2 LINE L1 4855 6064 -240 2425 95 26 31 chr5 50036708 50037098 -153048434 + L1MA2 LINE L1 5911 6298 -6 246 219 0 0 chr5 50037431 50037495 -153048037 + (ATG)n Simple_repeat Simple_repeat 2 65 0 22 35 0 0 chr5 50038464 50038493 -153047039 + AT_rich Low_complexity Low_complexity 1 29 0 227 100 0 25 chr5 50038824 50038864 -153046668 + (TA)n Simple_repeat Simple_repeat 2 40 0 848 236 51 4 chr5 50039044 50039298 -153046234 + L1MD3 LINE L1 7730 7995 0 195 308 110 22 chr5 50039345 50039436 -153046096 + MIR SINE MIR 106 204 -58 993 179 85 12 chr5 50039925 50040171 -153045361 + L1MB4 LINE L1 5902 6165 -15 2786 156 91 98 chr5 50040491 50041228 -153044304 + MER44D DNA MER2_type 2 605 0 1854 138 62 49 chr5 50041303 50041688 -153043844 - MLT1B LTR MaLR 0 390 1 23 33 0 0 chr5 50042271 50042301 -153043231 + AT_rich Low_complexity Low_complexity 1 30 0 516 89 0 0 chr5 50043052 50043131 -153042401 - L1MA1 LINE L1 -4 6298 6220 25 31 0 0 chr5 50043322 50043354 -153042178 + AT_rich Low_complexity Low_complexity 1 32 0 22 94 0 0 chr5 50044393 50044457 -153041075 + AT_rich Low_complexity Low_complexity 1 64 0 2503 25 16 0 chr5 50044713 50045132 -153040400 - L1PA4 LINE L1 -591 5564 5141 4756 42 8 0 chr5 50045132 50045721 -153039811 + L1PA4 LINE L1 5560 6154 -1 1174 197 67 10 chr5 50045870 50046169 -153039363 - Charlie5 DNA MER1_type 0 2619 2304 432 289 9 0 chr5 50046277 50046391 -153039141 - MER3 DNA MER1_type -41 168 54 361 257 50 29 chr5 50046438 50046527 -153039005 + MIR SINE MIR 71 166 -96 1897 166 37 3 chr5 50046527 50046876 -153038656 + MER46B DNA MER2_type 1 236 0 361 257 50 29 chr5 50046876 50046926 -153038606 + MIR SINE MIR 166 213 -49 255 254 69 90 chr5 50047889 50048078 -153037454 + MIR SINE MIR 65 249 -13 543 259 15 0 chr5 50048773 50048904 -153036628 + MIR SINE MIR 130 262 0 362 250 19 9 chr5 50049655 50049763 -153035769 + L1ME3 LINE L1 5175 5283 -863 1485 254 77 79 chr5 50049766 50050585 -153034947 + L1ME3 LINE L1 5316 6132 -30 205 191 0 0 chr5 50050696 50050738 -153034794 + T-rich Low_complexity Low_complexity 1 42 0 41036 63 3 9 chr5 50050746 50056937 -153028595 - L1PA5 LINE L1 -1 6153 1 22 35 0 0 chr5 50057044 50057073 -153028459 + AT_rich Low_complexity Low_complexity 1 29 0 6193 100 25 5 chr5 50058134 50059284 -153026248 - L1PA12 LINE L1 -1 6167 5003 7900 149 10 3 chr5 50059284 50060624 -153024908 + L1P LINE L1 3484 4832 -1314 3939 197 24 35 chr5 50060933 50060970 -153024562 - L1MC3 LINE L1 -8 7777 7741 1945 186 59 5 chr5 50060970 50061378 -153024154 - MSTB1 LTR MaLR -2 430 1 3939 197 24 35 chr5 50061378 50062272 -153023260 - L1MC3 LINE L1 -44 7741 6857 915 159 0 0 chr5 50063427 50063659 -153021873 + CT-rich Low_complexity Low_complexity 1 232 0 2168 114 0 7 chr5 50064622 50064919 -153020613 - AluSg1 SINE Alu -11 298 4 226 357 14 0 chr5 50065221 50065291 -153020241 - L2 LINE L2 -1 3271 3201 389 311 23 0 chr5 50066149 50066281 -153019251 - MLT1J LTR MaLR -308 203 69 2617 91 9 0 chr5 50066303 50066653 -153018879 - THE1A LTR MaLR 0 355 3 39 0 0 0 chr5 50066661 50066700 -153018832 + AT_rich Low_complexity Low_complexity 1 39 0 235 245 21 53 chr5 50066719 50066813 -153018719 - L1ME LINE L1 -474 5647 5557 1381 159 132 29 chr5 50066851 50067191 -153018341 - THE1C LTR MaLR 0 375 1 1619 173 10 22 chr5 50067568 50067881 -153017651 - AluJb SINE Alu -3 309 1 226 213 0 38 chr5 50067896 50067976 -153017556 + T-rich Low_complexity Low_complexity 5 81 0 2049 160 18 41 chr5 50068584 50068978 -153016554 - Tigger2 DNA MER2_type 0 2718 2334 256 234 0 0 chr5 50068973 50069020 -153016512 - Tigger2 DNA MER2_type -2655 63 17 * 225 293 14 85 chr5 50069407 50069619 -153015913 - L1 LINE L1 -2419 3727 3531 339 316 0 38 chr5 50069705 50069863 -153015669 + MER5B DNA MER1_type 1 152 -26 21 0 0 0 chr5 50069863 50069884 -153015648 + AT_rich Low_complexity Low_complexity 1 21 0 3009 178 136 92 chr5 50069962 50070512 -153015020 - L1MC3 LINE L1 -14 7771 7247 256 232 24 37 chr5 50070512 50070594 -153014938 - MLT1F1 LTR MaLR -442 125 45 3009 178 136 92 chr5 50070594 50070968 -153014564 - L1MC3 LINE L1 -538 7247 6721 1478 184 11 28 chr5 50070968 50071250 -153014282 - MSTC LTR MaLR -151 277 1 2619 278 65 30 chr5 50071250 50071857 -153013675 - L1M4 LINE L1 -2054 4092 3507 3519 117 2 4 chr5 50071857 50072369 -153013163 + MER9 LTR ERVK 1 511 0 2619 278 65 30 chr5 50072369 50073140 -153012392 - L1M4 LINE L1 -2639 3507 2667 299 297 0 11 chr5 50073899 50073990 -153011542 - L2 LINE L2 -36 3277 3188 251 283 101 7 chr5 50074102 50074240 -153011292 - L2 LINE L2 -3144 170 20 382 331 6 45 chr5 50074297 50074454 -153011078 - MIR SINE MIR -92 170 20 23 33 0 0 chr5 50074723 50074753 -153010779 + AT_rich Low_complexity Low_complexity 1 30 0 330 26 0 0 chr5 50075799 50075838 -153009694 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 588 202 0 0 chr5 50075866 50075965 -153009567 - AluJb SINE Alu -81 231 133 2006 127 0 0 chr5 50075965 50076264 -153009268 + L1P4 LINE L1 5400 5698 -465 22 80 0 0 chr5 50076331 50076381 -153009151 + AT_rich Low_complexity Low_complexity 1 50 0 761 227 0 48 chr5 50076864 50077071 -153008461 + MER3 DNA MER1_type 7 203 -6 531 346 166 19 chr5 50077241 50077490 -153008042 - L2 LINE L2 -5 3308 3097 1393 214 54 3 chr5 50077490 50077785 -153007747 + AluJb SINE Alu 3 312 0 531 346 166 19 chr5 50077785 50077968 -153007564 - L2 LINE L2 -216 3097 2812 397 312 138 5 chr5 50078043 50078232 -153007300 - L2 LINE L2 -2324 990 777 832 128 15 8 chr5 50078875 50079007 -153006525 + MLT1A1 LTR MaLR 7 139 -226 884 130 0 14 chr5 50079007 50079145 -153006387 - THE1B LTR MaLR 0 364 229 1579 124 30 0 chr5 50079249 50079483 -153006049 - THE1B LTR MaLR -123 241 1 712 241 62 31 chr5 50079483 50079707 -153005825 + MLT1A1 LTR MaLR 135 365 0 230 318 0 0 chr5 50080916 50080982 -153004550 + MIR3 SINE MIR 116 181 -27 499 278 13 13 chr5 50081357 50081508 -153004024 + MIR SINE MIR 80 230 -32 204 191 43 21 chr5 50081901 50081948 -153003584 - MIR SINE MIR -21 241 194 314 78 0 20 chr5 50082310 50082361 -153003171 + (CA)n Simple_repeat Simple_repeat 2 51 0 6036 110 8 0 chr5 50085135 50086237 -152999295 - L1PA14 LINE L1 -2 6159 5047 183 304 58 29 chr5 50086699 50086768 -152998764 + L2 LINE L2 3201 3271 -1 200 278 0 0 chr5 50086816 50086870 -152998662 - L2 LINE L2 -494 2820 2767 2123 92 10 23 chr5 50087546 50087851 -152997681 + AluSc SINE Alu 1 301 -8 2045 146 122 10 chr5 50088015 50088400 -152997132 - MSTA LTR MaLR 0 428 1 759 176 0 15 chr5 50088959 50089095 -152996437 + MER20 DNA MER1_type 85 218 -1 573 258 72 30 chr5 50089754 50090018 -152995514 + L1MC5 LINE L1 7611 7885 -76 505 243 79 28 chr5 50090616 50090793 -152994739 - MER58C DNA MER1_type -1 214 29 290 257 239 0 chr5 50093204 50093313 -152992219 + MER5A DNA MER1_type 55 189 0 1780 136 4 4 chr5 50094371 50094636 -152990896 - AluSx SINE Alu -9 303 39 195 341 56 50 chr5 50094860 50095039 -152990493 + L3 LINE CR1 1164 1343 -234 213 215 152 63 chr5 50097921 50098000 -152987532 - L2 LINE L2 0 3272 3187 408 20 0 0 chr5 50098229 50098278 -152987254 + (TG)n Simple_repeat Simple_repeat 2 50 0 29 47 0 0 chr5 50098838 50098881 -152986651 + AT_rich Low_complexity Low_complexity 1 43 0 293 306 56 66 chr5 50099320 50099516 -152986016 + MLT1L LTR MaLR 201 394 -221 231 180 16 16 chr5 50100241 50100302 -152985230 + A-rich Low_complexity Low_complexity 3 63 0 1104 214 51 20 chr5 50100319 50100613 -152984919 - L1MB8 LINE L1 -7 6171 5869 203 241 0 0 chr5 50100832 50100886 -152984646 + (CA)n Simple_repeat Simple_repeat 2 55 0 195 344 62 0 chr5 50100956 50101020 -152984512 + L2 LINE L2 3018 3085 -187 2485 71 0 7 chr5 50102463 50102773 -152982759 - AluSc SINE Alu -1 308 1 2155 130 0 0 chr5 50103256 50103556 -152981976 + AluSx SINE Alu 5 304 -8 21 0 0 0 chr5 50104039 50104060 -152981472 + AT_rich Low_complexity Low_complexity 1 21 0 205 270 54 54 chr5 50104210 50104321 -152981211 + L2 LINE L2 2950 3060 -212 2201 112 0 3 chr5 50105056 50105352 -152980180 - AluSg SINE Alu -15 295 1 328 326 22 92 chr5 50106132 50106168 -152979364 - MER5B DNA MER1_type -7 171 134 2270 78 0 17 chr5 50106168 50106504 -152979028 + AluY SINE Alu 1 311 0 328 326 22 92 chr5 50106504 50106651 -152978881 - MER5B DNA MER1_type -44 134 1 267 281 230 15 chr5 50106685 50106820 -152978712 - MER5A DNA MER1_type 0 189 26 277 342 51 61 chr5 50106868 50107064 -152978468 + MIR SINE MIR 59 252 -10 227 242 0 0 chr5 50107856 50107918 -152977614 + (CAG)n Simple_repeat Simple_repeat 3 64 0 21 57 0 0 chr5 50108482 50108517 -152977015 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr5 50109513 50109555 -152975977 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr5 50110505 50110531 -152975001 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr5 50110960 50110994 -152974538 + AT_rich Low_complexity Low_complexity 1 34 0 757 176 0 0 chr5 50113386 50113517 -152972015 + FLAM_C SINE Alu 1 131 -12 944 179 0 19 chr5 50113576 50113738 -152971794 + AluJb SINE Alu 146 304 -8 2102 122 0 7 chr5 50113869 50114172 -152971360 - AluSx SINE Alu -11 301 1 328 269 0 43 chr5 50114728 50114821 -152970711 + MER5A DNA MER1_type 12 100 -89 1797 132 66 120 chr5 50115452 50116024 -152969508 - LTR12 LTR ERV1 -219 2219 53 270 211 0 0 chr5 50116024 50116076 -152969456 - LTR30 LTR ERV1 -670 52 1 375 302 0 17 chr5 50116091 50116207 -152969325 + MIR SINE MIR 129 242 -20 213 132 0 0 chr5 50116823 50116861 -152968671 + (CA)n Simple_repeat Simple_repeat 2 39 0 22 56 0 0 chr5 50118220 50118256 -152967276 + AT_rich Low_complexity Low_complexity 1 36 0 190 348 29 0 chr5 50118281 50118350 -152967182 + MIR3 SINE MIR 123 193 -15 196 286 143 0 chr5 50118411 50118488 -152967044 + L2 LINE L2 3175 3262 -10 232 49 73 0 chr5 50119407 50119448 -152966084 + T-rich Low_complexity Low_complexity 3 46 0 2224 76 11 0 chr5 50119713 50120038 -152965494 - AluY SINE Alu 0 328 1 339 179 0 0 chr5 50120079 50120135 -152965397 + L2 LINE L2 3217 3272 0 2232 123 6 14 chr5 50120230 50120595 -152964937 + L1MA2 LINE L1 5943 6304 0 1394 195 21 7 chr5 50120975 50121257 -152964275 - AluSx SINE Alu -16 286 1 325 258 8 8 chr5 50121656 50121788 -152963744 + (TA)n Simple_repeat Simple_repeat 2 133 0 219 367 70 55 chr5 50122036 50122235 -152963297 - L2 LINE L2 -342 2972 2771 5785 262 39 31 chr5 50122239 50124714 -152960818 + L1PA15 LINE L1 1 2854 -3943 1976 137 7 0 chr5 50124714 50124991 -152960541 + AluSg SINE Alu 1 279 -31 5785 262 39 31 chr5 50124991 50126255 -152959277 + L1PA15 LINE L1 2854 4106 -2691 42792 50 3 3 chr5 50126257 50132454 -152953078 + L1PA4 LINE L1 1 6199 0 8176 196 17 18 chr5 50132455 50132941 -152952591 + L1PA15 LINE L1 4097 4582 -2234 2205 99 3 0 chr5 50132941 50133234 -152952298 + AluSg SINE Alu 1 294 -16 8176 196 17 18 chr5 50133234 50133864 -152951668 + L1PA15 LINE L1 4582 5211 -1605 2068 123 7 0 chr5 50133864 50134157 -152951375 + AluSp SINE Alu 1 295 -18 8176 196 17 18 chr5 50134157 50135763 -152949769 + L1PA15 LINE L1 5211 6813 -3 2663 88 3 0 chr5 50135883 50136237 -152949295 + THE1A LTR MaLR 1 355 0 10879 105 15 14 chr5 50136238 50137815 -152947717 + THE1A-int LTR MaLR 2 1580 0 2468 100 12 0 chr5 50137815 50138155 -152947377 + THE1A LTR MaLR 1 344 -11 453 262 0 0 chr5 50138162 50138269 -152947263 + MER94 DNA DNA 8 114 -20 772 248 8 65 chr5 50139487 50139733 -152945799 + MIR SINE MIR 2 233 -29 375 322 90 6 chr5 50139760 50139937 -152945595 + L2 LINE L2 2219 2410 -904 1886 191 19 8 chr5 50139957 50140318 -152945214 - MLT1A1 LTR MaLR 0 365 1 6181 89 5 29 chr5 50341982 50343050 -152742482 + L1P LINE L1 2536 3500 -2646 11889 30 0 1 chr5 50343157 50344583 -152740949 - L1P LINE L1 -1219 4927 3503 8220 50 4 1 chr5 50344755 50345808 -152739724 + L1P LINE L1 1290 2345 -3801 1449 208 13 20 chr5 50345808 50346106 -152739426 - AluJb SINE Alu -16 296 1 191 346 5 90 chr5 50346106 50346294 -152739238 - L3 LINE CR1 -915 662 491 341 372 61 22 chr5 50346583 50346763 -152738769 - L2 LINE L2 -302 3011 2825 2013 109 10 20 chr5 50346882 50347184 -152738348 + AluSg SINE Alu 1 299 -11 421 333 118 58 chr5 50347191 50347834 -152737698 - L2 LINE L2 -353 2961 2280 202 188 0 62 chr5 50349820 50349868 -152735664 + L2 LINE L2 3213 3257 -15 225 0 0 0 chr5 50350719 50350744 -152734788 + (A)n Simple_repeat Simple_repeat 1 25 0 367 303 45 19 chr5 50352761 50352916 -152732616 + LTR33 LTR ERVL 358 516 -5 314 358 89 11 chr5 50352955 50353134 -152732398 + MIR3 SINE MIR 16 208 0 201 39 0 0 chr5 50353662 50353688 -152731844 + (CA)n Simple_repeat Simple_repeat 2 27 0 227 283 87 22 chr5 50353870 50353962 -152731570 + L1ME3A LINE L1 5612 5709 -461 2307 81 10 0 chr5 50353967 50354315 -152731217 - AluY SINE Alu 0 351 1 295 295 9 0 chr5 50354352 50354457 -152731075 + L1ME3A LINE L1 5781 5886 -284 25 31 0 0 chr5 50354570 50354602 -152730930 + AT_rich Low_complexity Low_complexity 1 32 0 305 273 51 10 chr5 50354641 50354783 -152730749 - MLT1A2 LTR MaLR 0 375 241 1766 209 24 33 chr5 50354934 50355384 -152730148 + MER39 LTR ERV1 260 705 -2 673 209 8 0 chr5 50355393 50355522 -152730010 - MLT1A2 LTR MaLR -241 133 4 1943 152 18 39 chr5 50355754 50356142 -152729390 + L1MA3 LINE L1 5926 6305 0 2116 89 0 57 chr5 50356938 50357280 -152728252 + AluY SINE Alu 1 311 0 2429 114 19 11 chr5 50358877 50359238 -152726294 + THE1B LTR MaLR 1 364 0 31 58 0 0 chr5 50359495 50359547 -152725985 + AT_rich Low_complexity Low_complexity 1 52 0 306 332 98 54 chr5 50360491 50360696 -152724836 + MIR SINE MIR 5 218 -44 1821 146 32 0 chr5 50361978 50362259 -152723273 + AluSx SINE Alu 1 290 -22 600 330 15 5 chr5 50362276 50362473 -152723059 - MIR SINE MIR -60 202 4 2179 72 20 7 chr5 50362984 50363277 -152722255 - AluY SINE Alu -14 297 1 202 304 0 0 chr5 50363519 50363575 -152721957 + MIR SINE MIR 38 93 -115 660 161 0 23 chr5 50365466 50365596 -152719936 - L1PA15 LINE L1 -1 6164 6038 564 109 22 0 chr5 50365653 50365745 -152719787 - L1PA15 LINE L1 -108 6057 5964 225 83 0 0 chr5 50367602 50367638 -152717894 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr5 50367661 50367683 -152717849 + AT_rich Low_complexity Low_complexity 1 22 0 444 261 70 9 chr5 50368556 50368671 -152716861 + L2 LINE L2 3192 3313 0 198 0 0 0 chr5 50368883 50368905 -152716627 + (A)n Simple_repeat Simple_repeat 1 22 0 1485 225 60 39 chr5 50370710 50371096 -152714436 - MSTD LTR MaLR -2 394 1 27 0 0 0 chr5 50371118 50371145 -152714387 + AT_rich Low_complexity Low_complexity 1 27 0 32 43 0 0 chr5 50371369 50371415 -152714117 + AT_rich Low_complexity Low_complexity 1 46 0 546 322 62 22 chr5 50371783 50372010 -152713522 + MIR SINE MIR 15 250 -12 682 171 0 8 chr5 50372243 50372398 -152713134 + FLAM_C SINE Alu 1 154 0 215 246 131 72 chr5 50373211 50373239 -152712293 - L2 LINE L2 -37 3276 3251 1063 206 140 58 chr5 50373239 50373603 -152711929 + MSTD LTR MaLR 3 396 0 215 246 131 72 chr5 50373603 50373782 -152711750 - L2 LINE L2 -62 3251 2979 262 301 14 0 chr5 50373815 50373888 -152711644 + GA-rich Low_complexity Low_complexity 4 77 0 21 71 0 0 chr5 50374382 50374424 -152711108 + AT_rich Low_complexity Low_complexity 1 42 0 225 232 0 87 chr5 50376321 50376390 -152709142 + L1MC4 LINE L1 7801 7863 -179 182 239 0 22 chr5 50377526 50377572 -152707960 + L2 LINE L2 3228 3272 0 2025 127 0 3 chr5 50377878 50378169 -152707363 + AluSg SINE Alu 1 290 -20 186 281 47 31 chr5 50379825 50379889 -152705643 - L2 LINE L2 -1 3271 3207 239 305 42 8 chr5 50379947 50380065 -152705467 - HAL1 LINE L1 -605 1902 1781 389 240 58 25 chr5 50380109 50380230 -152705302 - HAL1 LINE L1 -857 1650 1526 297 344 84 71 chr5 50381006 50381546 -152703986 + L2 LINE L2 2639 3184 -88 653 191 0 7 chr5 50381623 50381764 -152703768 + GA-rich Low_complexity Low_complexity 4 143 0 736 224 10 42 chr5 50384898 50385090 -152700442 + MLT1A2 LTR MaLR 174 359 -15 515 148 23 0 chr5 50385101 50385189 -152700343 + MLT1A2 LTR MaLR 285 374 0 235 205 108 36 chr5 50385430 50385453 -152700079 - MER46A DNA MER2_type -69 167 139 901 131 182 0 chr5 50385453 50385629 -152699903 + MER46B DNA MER2_type 1 83 -153 26 0 0 0 chr5 50385658 50385684 -152699848 + AT_rich Low_complexity Low_complexity 1 26 0 444 281 99 6 chr5 50388602 50388773 -152696759 + MIR SINE MIR 5 191 -71 5189 132 31 3 chr5 50389428 50390489 -152695043 - L1PA16 LINE L1 -2 6164 5108 16345 58 110 6 chr5 50390590 50392881 -152692651 - L1P LINE L1 -3618 2528 1 22 88 0 0 chr5 50393239 50393296 -152692236 + AT_rich Low_complexity Low_complexity 1 57 0 35 24 0 0 chr5 50393431 50393473 -152692059 + AT_rich Low_complexity Low_complexity 1 42 0 190 289 0 0 chr5 50394502 50394540 -152690992 + L2 LINE L2 3186 3223 -49 2098 112 3 19 chr5 50394692 50395005 -152690527 - AluSq SINE Alu -5 308 1 1382 91 0 67 chr5 50395451 50395661 -152689871 + AluSx SINE Alu 1 196 -116 281 300 100 0 chr5 50395750 50395830 -152689702 + MIR SINE MIR 41 128 -134 316 345 9 0 chr5 50395904 50396020 -152689512 + MIR SINE MIR 144 260 -2 774 245 170 43 chr5 50396279 50397015 -152688517 + L1MC5 LINE L1 7018 7846 -115 804 479 81 0 chr5 50397070 50397329 -152688203 - AluSq SINE Alu -31 282 3 7570 30 0 1 chr5 50397349 50398826 -152686706 - L1PA5 LINE L1 -2 6152 4676 242 241 0 0 chr5 50398992 50399046 -152686486 + (TA)n Simple_repeat Simple_repeat 2 55 0 357 351 80 69 chr5 50401328 50401908 -152683624 + L2 LINE L2 2656 3232 -40 216 0 0 0 chr5 50403798 50403822 -152681710 + (A)n Simple_repeat Simple_repeat 1 24 0 1737 252 14 0 chr5 50404598 50405042 -152680490 - L1P LINE L1 -1010 5136 4687 2069 105 7 14 chr5 50405108 50405402 -152680130 + AluY SINE Alu 1 292 -19 404 345 28 0 chr5 50406937 50407079 -152678453 - MIR SINE MIR -96 166 21 377 257 4 136 chr5 50409035 50409292 -152676240 + L2 LINE L2 2997 3219 -94 458 188 36 4 chr5 50410849 50410984 -152674548 + MER53 DNA DNA 1 189 0 548 79 0 0 chr5 50411496 50411572 -152673960 + L1MA1 LINE L1 6218 6293 -9 267 31 0 0 chr5 50413119 50413151 -152672381 + (TG)n Simple_repeat Simple_repeat 1 32 0 279 0 0 0 chr5 50413221 50413252 -152672280 + (TA)n Simple_repeat Simple_repeat 2 32 0 1743 106 73 7 chr5 50413340 50413615 -152671917 - AluSx SINE Alu -4 308 16 205 226 19 0 chr5 50414058 50414111 -152671421 + (TA)n Simple_repeat Simple_repeat 2 55 0 228 327 26 35 chr5 50417581 50417694 -152667838 + L2 LINE L2 3190 3301 -12 582 300 102 14 chr5 50417889 50418172 -152667360 - MLT1J LTR MaLR -197 314 7 391 149 14 27 chr5 50418260 50418334 -152667198 + L1MC4a LINE L1 6646 6718 -1090 948 140 38 0 chr5 50418335 50418521 -152667011 + L1MC3 LINE L1 6910 7102 -683 229 273 57 11 chr5 50418522 50418610 -152666922 + MLT1F1 LTR MaLR 42 133 -434 2054 198 70 16 chr5 50418613 50419168 -152666364 + L1MC3 LINE L1 7199 7783 -2 21 0 0 0 chr5 50419792 50419813 -152665719 + AT_rich Low_complexity Low_complexity 1 21 0 1859 171 19 6 chr5 50420696 50421012 -152664520 + MER1B DNA MER1_type 17 336 -3 266 353 103 16 chr5 50421517 50421701 -152663831 + L2 LINE L2 2589 2788 -526 268 325 181 19 chr5 50421995 50422155 -152663377 - L3 LINE CR1 -80 1497 1312 207 0 0 0 chr5 50424720 50424743 -152660789 + (A)n Simple_repeat Simple_repeat 1 23 0 261 273 71 20 chr5 50425366 50425465 -152660067 - MIR SINE MIR -86 176 73 815 259 94 31 chr5 50425512 50425767 -152659765 - MLT1G1 LTR MaLR -2 593 323 915 307 90 48 chr5 50425791 50426312 -152659220 - L2 LINE L2 -2303 1011 469 21 36 0 0 chr5 50426404 50426432 -152659100 + AT_rich Low_complexity Low_complexity 1 28 0 2254 136 13 18 chr5 50426583 50426972 -152658560 - L1PA15 LINE L1 -8 7576 7190 1128 82 0 0 chr5 50426989 50427135 -152658397 + AluY SINE Alu 150 295 -16 7958 170 16 30 chr5 50427139 50429078 -152656454 - L1PA15 LINE L1 -403 7181 5282 2294 108 13 53 chr5 50429078 50429457 -152656075 - THE1B LTR MaLR 0 364 1 7958 170 16 30 chr5 50429457 50429625 -152655907 - L1PA15 LINE L1 -2302 5282 5113 1255 234 1 16 chr5 50429654 50429981 -152655551 - L1PA15 LINE L1 -3778 3787 3475 306 180 16 49 chr5 50430124 50430185 -152655347 + L2 LINE L2 3249 3307 -6 244 277 99 10 chr5 50430998 50431099 -152654433 - MIR SINE MIR -2 260 151 24 32 0 0 chr5 50431481 50431512 -152654020 + AT_rich Low_complexity Low_complexity 1 31 0 370 291 35 50 chr5 50433147 50433288 -152652244 - MIR3 SINE MIR -47 161 23 1230 235 190 20 chr5 50434029 50434472 -152651060 - MLT1F LTR MaLR -6 536 19 2137 65 7 0 chr5 50434643 50434918 -152650614 + AluY SINE Alu 35 311 0 313 272 207 18 chr5 50434946 50435115 -152650417 + MIR SINE MIR 40 240 -22 34 42 0 0 chr5 50436235 50436283 -152649249 + AT_rich Low_complexity Low_complexity 1 48 0 225 127 28 42 chr5 50436283 50436354 -152649178 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 230 220 68 0 chr5 50436594 50436653 -152648879 + L2 LINE L2 3251 3313 0 441 171 0 0 chr5 50437369 50437457 -152648075 + GA-rich Low_complexity Low_complexity 3 90 0 24 0 0 0 chr5 50437969 50437993 -152647539 + AT_rich Low_complexity Low_complexity 1 24 0 301 245 32 0 chr5 50438526 50438620 -152646912 + (TA)n Simple_repeat Simple_repeat 1 97 0 412 292 42 92 chr5 50438623 50438883 -152646649 + MER102b DNA MER1_type 91 337 -4 21 57 0 0 chr5 50440286 50440321 -152645211 + AT_rich Low_complexity Low_complexity 1 35 0 230 356 11 0 chr5 50442286 50442373 -152643159 - L2 LINE L2 0 3272 3185 21 0 0 0 chr5 50442595 50442616 -152642916 + AT_rich Low_complexity Low_complexity 1 21 0 385 270 22 66 chr5 50442783 50442893 -152642639 - LTR33 LTR ERVL -305 216 112 1715 191 94 21 chr5 50442893 50443328 -152642204 - MLT1C LTR MaLR 0 467 1 385 270 22 66 chr5 50443328 50443354 -152642178 - LTR33 LTR ERVL -409 112 86 200 59 29 0 chr5 50444181 50444215 -152641317 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 227 235 20 0 chr5 50444370 50444421 -152641111 + MER58 DNA MER1_type 187 238 -2182 13208 32 4 0 chr5 50444444 50446800 -152638732 - L1PA3 LINE L1 -3 6152 3791 33 43 0 0 chr5 50447048 50447095 -152638437 + AT_rich Low_complexity Low_complexity 1 47 0 189 352 62 23 chr5 50447231 50447359 -152638173 - MIR3 SINE MIR -62 146 14 1367 222 22 41 chr5 50447384 50447753 -152637779 + MLT1A1 LTR MaLR 4 365 0 323 78 20 0 chr5 50448615 50448666 -152636866 + (TC)n Simple_repeat Simple_repeat 1 52 0 204 375 151 16 chr5 50448686 50448878 -152636654 + L2 LINE L2 3044 3261 -11 555 103 19 9 chr5 50449115 50449222 -152636310 + (TC)n Simple_repeat Simple_repeat 1 108 0 207 387 139 16 chr5 50449240 50449434 -152636098 + L2 LINE L2 3044 3261 -11 29 0 0 0 chr5 50449559 50449588 -152635944 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr5 50451995 50452019 -152633513 + (TA)n Simple_repeat Simple_repeat 1 24 0 447 311 11 33 chr5 50452310 50452490 -152633042 - MIR SINE MIR -48 214 39 294 29 0 0 chr5 50452632 50452667 -152632865 + (CA)n Simple_repeat Simple_repeat 2 36 0 1853 142 3 3 chr5 50453340 50453636 -152631896 + AluSx SINE Alu 1 296 -16 187 317 49 49 chr5 50453665 50453807 -152631725 + L2 LINE L2 3079 3220 -93 228 411 46 29 chr5 50455236 50455411 -152630121 - MER91A DNA MER1_type -2 194 17 1893 134 3 31 chr5 50455696 50456017 -152629515 + AluSx SINE Alu 1 312 0 2137 117 0 0 chr5 50456898 50457188 -152628344 + AluSx SINE Alu 1 290 -22 868 273 81 73 chr5 50457453 50458664 -152626868 - L1ME LINE L1 -4687 1574 315 1426 75 11 0 chr5 50459109 50459296 -152626236 - AluSq SINE Alu 0 313 125 22 0 0 0 chr5 50459896 50459918 -152625614 + AT_rich Low_complexity Low_complexity 1 22 0 357 338 71 15 chr5 50459938 50460136 -152625396 - MIR SINE MIR 0 262 54 239 280 40 0 chr5 50460705 50460780 -152624752 + MIR SINE MIR 112 189 -73 109 36 0 12 chr5 50460875 50460963 -152624569 + AT_rich Low_complexity Low_complexity 1 88 -76 2421 63 0 10 chr5 50460963 50461265 -152624267 + AluY SINE Alu 1 299 -12 109 36 0 12 chr5 50461265 50461342 -152624190 + AT_rich Low_complexity Low_complexity 88 164 0 198 167 0 0 chr5 50461379 50461415 -152624117 + (CATA)n Simple_repeat Simple_repeat 1 36 0 423 0 0 0 chr5 50461502 50461549 -152623983 + (TA)n Simple_repeat Simple_repeat 2 48 0 369 0 0 0 chr5 50461759 50461800 -152623732 + (TA)n Simple_repeat Simple_repeat 2 42 0 286 321 0 0 chr5 50461810 50461919 -152623613 - L1ME LINE L1 -325 5796 5688 1733 179 0 20 chr5 50462166 50462468 -152623064 - AluJb SINE Alu -15 297 2 27 29 0 0 chr5 50463867 50463901 -152621631 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr5 50465148 50465171 -152620361 + AT_rich Low_complexity Low_complexity 1 23 0 216 167 0 0 chr5 50465358 50465406 -152620126 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 264 353 58 58 chr5 50466239 50466288 -152619244 + L2 LINE L2 1890 1938 -1376 7218 42 5 2 chr5 50466288 50467591 -152617941 - L1PA5 LINE L1 -3 6151 4851 264 353 58 58 chr5 50467591 50468040 -152617492 + L2 LINE L2 1937 2388 -926 187 232 36 0 chr5 50468576 50468632 -152616900 - MIR3 SINE MIR -2 206 149 195 378 0 10 chr5 50468654 50468752 -152616780 - L3 LINE CR1 -127 1450 1354 197 308 0 0 chr5 50468825 50468877 -152616655 + L2 LINE L2 2596 2647 -667 514 320 86 60 chr5 50469362 50469908 -152615624 - L3 LINE CR1 -674 903 344 12003 34 3 1 chr5 50470278 50472477 -152613055 + L1PA3 LINE L1 3933 6134 -21 4982 30 8 2 chr5 50472579 50473185 -152612347 + L1PA4 LINE L1 5544 6153 -2 189 416 65 0 chr5 50473947 50474101 -152611431 + L3 LINE CR1 35 198 -1379 306 311 11 0 chr5 50475492 50475582 -152609950 + MER34 LTR ERV1 5 95 -447 * 532 212 94 89 chr5 50475571 50475990 -152609542 + LTR48B LTR ERV1 157 596 -48 661 142 15 97 chr5 50476049 50476183 -152609349 + MER2 DNA MER2_type 2 124 -221 * 783 168 7 0 chr5 50476169 50476312 -152609220 + MER2 DNA MER2_type 66 209 -136 222 366 0 0 chr5 50476808 50476879 -152608653 + L3 LINE CR1 1498 1568 -9 3668 179 11 67 chr5 50477553 50478820 -152606712 + L1 LINE L1 4114 5222 -924 201 263 0 0 chr5 50479722 50479779 -152605753 + T-rich Low_complexity Low_complexity 1 57 0 13426 141 26 41 chr5 50480022 50481300 -152604232 + Tigger1 DNA MER2_type 1 1224 -1194 1205 234 59 31 chr5 50481300 50481590 -152603942 - AluJo SINE Alu -4 298 1 13426 141 26 41 chr5 50481590 50482764 -152602768 + Tigger1 DNA MER2_type 1224 2415 -3 22 35 0 0 chr5 50482827 50482856 -152602676 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr5 50483174 50483201 -152602331 + AT_rich Low_complexity Low_complexity 1 27 0 316 261 23 13 chr5 50483516 50483714 -152601818 + MER114 LTR ERV 20 254 -394 27 0 0 0 chr5 50483902 50483929 -152601603 + AT_rich Low_complexity Low_complexity 1 27 0 25 31 0 0 chr5 50483956 50483988 -152601544 + AT_rich Low_complexity Low_complexity 1 32 0 1034 264 130 60 chr5 50484328 50484858 -152600674 + MER21B LTR ERV1 141 707 -156 734 192 0 0 chr5 50485034 50485154 -152600378 + FLAM_C SINE Alu 1 120 -23 230 0 33 0 chr5 50485154 50485184 -152600348 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2215 105 3 6 chr5 50485823 50486137 -152599395 + AluSq SINE Alu 1 313 0 1818 55 102 0 chr5 50486920 50487156 -152598376 - AluY SINE Alu -16 295 36 1415 166 79 4 chr5 50488197 50488462 -152597070 + AluJo SINE Alu 2 286 -26 275 258 112 0 chr5 50489903 50489992 -152595540 - L2 LINE L2 -9 3304 3206 387 0 0 0 chr5 50490214 50490257 -152595275 + (CA)n Simple_repeat Simple_repeat 2 44 0 282 56 0 0 chr5 50490563 50490599 -152594933 + (CA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr5 50490787 50490810 -152594722 + AT_rich Low_complexity Low_complexity 1 23 0 529 215 60 40 chr5 50491100 50491249 -152594283 + MIR SINE MIR 111 262 0 563 212 180 58 chr5 50491441 50491630 -152593902 + MER39 LTR ERV1 6 217 -490 1105 239 113 19 chr5 50491684 50492002 -152593530 + MER39 LTR ERV1 358 705 -2 26 0 0 0 chr5 50492183 50492209 -152593323 + AT_rich Low_complexity Low_complexity 1 26 0 339 96 0 0 chr5 50492451 50492503 -152593029 + (CAT)n Simple_repeat Simple_repeat 1 52 0 257 250 0 0 chr5 50492818 50492874 -152592658 + CT-rich Low_complexity Low_complexity 1 56 0 318 294 64 43 chr5 50493875 50494226 -152591306 + MLT1L LTR MaLR 134 518 -97 2044 131 7 3 chr5 50494277 50494574 -152590958 + AluSq SINE Alu 4 301 -12 485 270 104 52 chr5 50495360 50495649 -152589883 - L2 LINE L2 0 3313 3010 25 31 0 0 chr5 50496573 50496605 -152588927 + AT_rich Low_complexity Low_complexity 1 32 0 14304 138 22 19 chr5 50496784 50497947 -152587585 + Tigger1 DNA MER2_type 1 1159 -1259 2144 53 21 0 chr5 50497947 50498230 -152587302 + L1PA4 LINE L1 5867 6155 0 14304 138 22 19 chr5 50498230 50499475 -152586057 + Tigger1 DNA MER2_type 1159 2417 -1 724 282 31 18 chr5 50501230 50501457 -152584075 - MIR SINE MIR -1 261 32 23 0 0 0 chr5 50501516 50501539 -152583993 + AT_rich Low_complexity Low_complexity 1 23 0 1250 219 50 75 chr5 50502725 50503164 -152582368 + MLT1D LTR MaLR 7 434 -71 42551 51 8 2 chr5 50503178 50509313 -152576219 - L1PA4 LINE L1 0 6155 1 403 148 0 0 chr5 50509317 50509378 -152576154 + MLT1D LTR MaLR 445 505 0 5557 46 0 0 chr5 50509673 50510350 -152575182 + L1PA5 LINE L1 5476 6152 -2 1217 263 9 22 chr5 50510408 50510724 -152574808 + MLT1A1 LTR MaLR 10 321 -44 863 231 158 9 chr5 50510777 50511119 -152574413 - MER20B DNA MER1_type -89 694 302 232 265 84 0 chr5 50511127 50511210 -152574322 - MER20B DNA MER1_type -611 172 83 230 306 99 36 chr5 50511248 50511359 -152574173 + L2 LINE L2 2957 3074 -198 192 77 0 0 chr5 50511604 50511630 -152573902 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 5576 158 22 65 chr5 50512937 50513475 -152572057 - L1MC1 LINE L1 -18 6315 5755 1336 178 123 19 chr5 50513475 50513744 -152571788 - AluJo SINE Alu -5 297 1 5576 158 22 65 chr5 50513744 50514879 -152570653 - L1MC1 LINE L1 -578 5755 4709 30 27 0 0 chr5 50515639 50515676 -152569856 + AT_rich Low_complexity Low_complexity 1 37 0 297 169 0 0 chr5 50515832 50515891 -152569641 + (CA)n Simple_repeat Simple_repeat 1 59 0 429 20 0 0 chr5 50515934 50515984 -152569548 + (TC)n Simple_repeat Simple_repeat 1 50 0 279 0 0 0 chr5 50515983 50516014 -152569518 + (CA)n Simple_repeat Simple_repeat 1 31 0 * 225 65 0 0 chr5 50516280 50516311 -152569221 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1975 143 0 4 chr5 50516315 50516616 -152568916 - AluSx SINE Alu 0 302 3 1098 156 0 0 chr5 50517986 50518146 -152567386 - AluSg/x SINE Alu -18 292 133 2155 82 7 30 chr5 50518537 50518840 -152566692 - AluY SINE Alu -15 296 1 407 214 0 0 chr5 50518842 50518912 -152566620 + Tigger5 DNA MER2_type 2254 2323 0 203 299 144 10 chr5 50518912 50519009 -152566523 + MIR SINE MIR 150 259 -3 13454 71 33 2 chr5 50519628 50522194 -152563338 + L1PA6 LINE L1 3559 6152 -2 189 107 0 0 chr5 50522827 50522855 -152562677 + (CA)n Simple_repeat Simple_repeat 2 29 0 192 250 78 0 chr5 50524066 50524130 -152561402 + MIR3 SINE MIR 105 173 -35 2111 151 20 59 chr5 50524448 50524501 -152561031 + MLT1B LTR MaLR 3 57 -333 2011 131 53 11 chr5 50524501 50524860 -152560672 + THE1C LTR MaLR 1 374 -1 2111 151 20 59 chr5 50524860 50525210 -152560322 + MLT1B LTR MaLR 57 390 0 25 0 0 0 chr5 50526153 50526178 -152559354 + AT_rich Low_complexity Low_complexity 1 25 0 481 290 31 67 chr5 50526832 50527025 -152558507 - MIR SINE MIR -69 193 8 312 254 105 92 chr5 50527911 50528348 -152557184 + L1ME4a LINE L1 5590 6032 -89 200 222 0 0 chr5 50528990 50529035 -152556497 + A-rich Low_complexity Low_complexity 1 45 0 189 107 0 0 chr5 50529339 50529367 -152556165 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 231 297 91 11 chr5 50529497 50529672 -152555860 + L1ME LINE L1 2934 3122 -3024 360 245 130 36 chr5 50529949 50530141 -152555391 + L1ME LINE L1 3633 3842 -2304 189 163 0 0 chr5 50530222 50530271 -152555261 + (TA)n Simple_repeat Simple_repeat 1 49 0 1455 284 71 32 chr5 50530285 50530996 -152554536 + L1ME LINE L1 3896 4650 -1496 398 52 0 17 chr5 50530996 50531054 -152554478 + (TG)n Simple_repeat Simple_repeat 1 57 0 1455 284 71 32 chr5 50531054 50531225 -152554307 + L1ME LINE L1 4650 4813 -1333 230 227 13 107 chr5 50531381 50531531 -152554001 + L1ME LINE L1 5106 5241 -905 905 265 108 14 chr5 50531570 50531985 -152553547 + L1ME LINE L1 5317 5770 -400 270 348 63 48 chr5 50532304 50532511 -152553021 - L2 LINE L2 -35 3237 3028 313 203 30 23 chr5 50533101 50533234 -152552298 + (TA)n Simple_repeat Simple_repeat 2 135 0 24 67 0 0 chr5 50533258 50533303 -152552229 + AT_rich Low_complexity Low_complexity 1 45 0 1089 166 10 10 chr5 50533694 50533893 -152551639 - AluJb SINE Alu -9 303 105 2007 156 0 0 chr5 50533909 50534217 -152551315 - AluSx SINE Alu -4 308 1 3230 19 0 3 chr5 50535651 50536030 -152549502 - L1PA2 LINE L1 -2 6153 5776 3260 14 0 0 chr5 50536030 50536400 -152549132 + L1PA2 LINE L1 5412 5781 -374 23 0 0 0 chr5 50536416 50536439 -152549093 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr5 50537718 50537744 -152547788 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 181 290 8 105 chr5 50539771 50539895 -152545637 + MIR SINE MIR 10 121 -141 553 278 128 32 chr5 50539895 50540208 -152545324 - MLT1J2 LTR MaLR 0 450 108 221 327 64 39 chr5 50540275 50540431 -152545101 + MIR SINE MIR 103 262 0 22 0 0 0 chr5 50540490 50540512 -152545020 + AT_rich Low_complexity Low_complexity 1 22 0 230 320 81 29 chr5 50540568 50540740 -152544792 - L2 LINE L2 0 3313 3133 222 294 35 35 chr5 50541065 50541150 -152544382 - L2 LINE L2 -511 2803 2719 310 190 4 21 chr5 50541287 50541360 -152544172 + L1MD3 LINE L1 7333 7598 -385 313 356 110 32 chr5 50541363 50541672 -152543860 - L2 LINE L2 -777 2537 2205 2690 180 182 144 chr5 50541879 50542442 -152543090 + L1MD3 LINE L1 6686 7227 -768 621 225 16 0 chr5 50542442 50542571 -152542961 + MLT1F1 LTR MaLR 1 131 -436 2690 180 182 144 chr5 50542571 50543140 -152542392 + L1MD3 LINE L1 7227 7993 -2 23 54 0 0 chr5 50543204 50543241 -152542291 + AT_rich Low_complexity Low_complexity 1 37 0 373 218 0 13 chr5 50543508 50543586 -152541946 - L2 LINE L2 0 3313 3237 391 298 112 0 chr5 50543590 50543751 -152541781 - MIR3 SINE MIR -20 188 10 291 309 75 0 chr5 50543987 50544081 -152541451 - MIR SINE MIR -72 136 36 1833 50 67 8 chr5 50544627 50544867 -152540665 + AluY SINE Alu 39 292 -19 225 79 0 79 chr5 50545901 50545939 -152539593 + L2 LINE L2 3236 3270 -2 210 311 19 68 chr5 50545942 50546045 -152539487 + MIR SINE MIR 33 130 -132 1142 323 93 11 chr5 50546300 50547073 -152538459 - L2 LINE L2 -4 3309 2463 832 328 55 37 chr5 50547086 50547543 -152537989 - L2 LINE L2 -2812 502 38 284 145 0 20 chr5 50547706 50547763 -152537769 + Alu SINE Alu 1 44 -259 1324 148 0 0 chr5 50547763 50547987 -152537545 + AluSg/x SINE Alu 93 316 0 293 319 135 18 chr5 50548645 50548808 -152536724 - MIR SINE MIR -32 230 49 262 332 243 20 chr5 50549013 50549417 -152536115 - L2 LINE L2 -6 3307 2814 23 0 0 0 chr5 50549491 50549514 -152536018 + AT_rich Low_complexity Low_complexity 1 23 0 243 224 67 75 chr5 50549584 50549718 -152535814 - L1MC4 LINE L1 -1339 6703 6571 1512 276 53 23 chr5 50551211 50551344 -152534188 + L1M4 LINE L1 2143 2271 -3875 1860 139 26 16 chr5 50551344 50551653 -152533879 + AluSq SINE Alu 1 312 -1 1512 276 53 23 chr5 50551653 50552117 -152533415 + L1M4 LINE L1 2271 2758 -3388 682 289 22 55 chr5 50552897 50553132 -152532400 + MIR SINE MIR 14 238 -24 240 363 0 0 chr5 50553361 50553441 -152532091 + L2 LINE L2 2986 3065 -207 25 0 0 0 chr5 50553464 50553489 -152532043 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr5 50553577 50553614 -152531918 + AT_rich Low_complexity Low_complexity 1 37 0 882 312 55 6 chr5 50553855 50554185 -152531347 + MLT1I LTR MaLR 13 358 -51 228 35 0 0 chr5 50554931 50554960 -152530572 + (TG)n Simple_repeat Simple_repeat 2 30 0 31 0 0 0 chr5 50555937 50555968 -152529564 + AT_rich Low_complexity Low_complexity 1 31 0 1350 197 49 28 chr5 50559217 50559501 -152526031 + AluJo SINE Alu 1 290 -22 228 304 141 11 chr5 50560050 50560142 -152525390 - L2 LINE L2 -6 3266 3163 394 363 91 19 chr5 50560524 50560833 -152524699 - L2 LINE L2 -556 2758 2428 1907 104 4 4 chr5 50561272 50561541 -152523991 + AluSx SINE Alu 1 269 -43 1312 168 12 4 chr5 50563226 50563482 -152522050 - AluSq SINE Alu -12 301 44 379 297 69 53 chr5 50566379 50566625 -152518907 - L1ME LINE L1 -524 5597 5348 650 191 0 37 chr5 50566871 50567007 -152518525 - FLAM_C SINE Alu -1 132 2 261 286 60 28 chr5 50567008 50567225 -152518307 - L1ME LINE L1 -1455 4691 4468 613 293 93 59 chr5 50567233 50567285 -152518247 - L1ME LINE L1 -1625 4521 4472 2086 96 24 7 chr5 50567285 50567577 -152517955 - AluY SINE Alu -14 297 1 613 293 93 59 chr5 50567577 50568172 -152517360 - L1ME LINE L1 -1674 4472 3852 313 257 6 94 chr5 50568621 50568652 -152516880 - L1ME LINE L1 -2847 3299 3267 2227 66 0 13 chr5 50568652 50568981 -152516551 - L1PA5 LINE L1 0 6154 5858 313 257 6 94 chr5 50568981 50569120 -152516412 - L1ME LINE L1 -2879 3267 3144 23 68 0 0 chr5 50569293 50569337 -152516195 + AT_rich Low_complexity Low_complexity 1 44 0 24 96 0 0 chr5 50569531 50569604 -152515928 + AT_rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr5 50569698 50569721 -152515811 + AT_rich Low_complexity Low_complexity 1 23 0 211 231 26 137 chr5 50569776 50569805 -152515727 - L2 LINE L2 0 3313 3282 2083 118 0 13 chr5 50569805 50570110 -152515422 + AluY SINE Alu 3 303 -8 211 231 26 137 chr5 50570110 50570197 -152515335 - L2 LINE L2 -31 3282 3210 21 36 0 0 chr5 50570205 50570233 -152515299 + AT_rich Low_complexity Low_complexity 1 28 0 234 314 186 10 chr5 50570853 50571047 -152514485 + L2 LINE L2 3073 3300 -13 195 42 0 0 chr5 50571047 50571071 -152514461 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 243 321 134 43 chr5 50571303 50571512 -152514020 - MIR SINE MIR -32 230 3 21 36 0 0 chr5 50572252 50572280 -152513252 + AT_rich Low_complexity Low_complexity 1 28 0 746 282 86 67 chr5 50572633 50573144 -152512388 + LTR33 LTR ERVL 1 521 0 668 282 183 41 chr5 50573493 50574131 -152511401 + L2 LINE L2 2575 3312 -1 23 33 0 0 chr5 50574210 50574240 -152511292 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr5 50574488 50574518 -152511014 + AT_rich Low_complexity Low_complexity 1 30 0 2257 92 0 30 chr5 50575154 50575489 -152510043 + L1PA8A LINE L1 5807 6131 0 2026 118 28 0 chr5 50576056 50576343 -152509189 + AluSx SINE Alu 10 304 -8 321 274 29 29 chr5 50576584 50576686 -152508846 + L2 LINE L2 3177 3278 -35 758 237 260 11 chr5 50576767 50577125 -152508407 + LTR50 LTR ERVL 9 455 -340 387 217 49 120 chr5 50577545 50577735 -152507797 + MER69A DNA AcHobo 3 173 -4 363 189 79 8 chr5 50578473 50578600 -152506932 - MER114 LTR ERV -363 285 150 22 56 0 0 chr5 50578649 50578685 -152506847 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr5 50578713 50578734 -152506798 + AT_rich Low_complexity Low_complexity 1 21 0 811 328 35 15 chr5 50578859 50579264 -152506268 + ERVL LTR ERVL 2180 2592 -3172 301 341 45 0 chr5 50580436 50580568 -152504964 - MER117 DNA MER1_type -58 139 2 23 0 0 0 chr5 50581182 50581205 -152504327 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr5 50581560 50581605 -152503927 + AT_rich Low_complexity Low_complexity 1 45 0 215 206 15 44 chr5 50582114 50582182 -152503350 + CT-rich Low_complexity Low_complexity 2 67 0 243 273 102 0 chr5 50582204 50582292 -152503240 - MIR SINE MIR -1 261 165 1499 196 52 0 chr5 50582539 50582809 -152502723 - AluJb SINE Alu -28 284 1 22 35 0 0 chr5 50582862 50582891 -152502641 + AT_rich Low_complexity Low_complexity 1 29 0 2068 98 0 34 chr5 50583126 50583458 -152502074 + AluSx SINE Alu 1 322 0 186 303 76 25 chr5 50583952 50584071 -152501461 + MIR SINE MIR 126 250 -12 253 315 87 0 chr5 50584938 50585030 -152500502 + L2 LINE L2 2433 2532 -782 * 383 211 73 151 chr5 50585029 50585247 -152500285 - L2 LINE L2 0 3313 3113 253 179 18 89 chr5 50585304 50585416 -152500116 - L2 LINE L2 -3110 204 101 269 359 111 38 chr5 50585638 50586192 -152499340 + L2 LINE L2 2594 3228 -44 1909 128 35 0 chr5 50586819 50587101 -152498431 - AluSx SINE Alu -20 292 1 426 280 143 35 chr5 50587576 50587809 -152497723 - MIR SINE MIR -14 248 1 249 276 23 180 chr5 50587943 50588160 -152497372 - L2 LINE L2 0 3313 3131 1063 314 58 30 chr5 50588378 50588808 -152496724 - L2 LINE L2 -507 2807 2366 324 206 20 10 chr5 50588938 50589040 -152496492 + CT-rich Low_complexity Low_complexity 4 106 0 306 50 0 0 chr5 50589202 50589242 -152496290 + (T)n Simple_repeat Simple_repeat 1 40 0 280 286 9 54 chr5 50590705 50590817 -152494715 - MIR SINE MIR 0 262 156 360 43 0 0 chr5 50591162 50591208 -152494324 + (CA)n Simple_repeat Simple_repeat 2 47 0 994 251 117 108 chr5 50591353 50592167 -152493365 + L1MC4 LINE L1 6411 7231 -811 213 65 0 0 chr5 50592238 50592269 -152493263 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr5 50592467 50592489 -152493043 + AT_rich Low_complexity Low_complexity 1 22 0 6735 175 54 66 chr5 50593555 50595545 -152489987 + L1MCa LINE L1 1 2062 -4364 347 41 20 0 chr5 50595545 50595594 -152489938 + (TA)n Simple_repeat Simple_repeat 1 50 0 6735 175 54 66 chr5 50595594 50595643 -152489889 + L1MCa LINE L1 2062 2110 -4316 27 0 0 0 chr5 50596278 50596305 -152489227 + AT_rich Low_complexity Low_complexity 1 27 0 2776 178 24 12 chr5 50596504 50597009 -152488523 - MER44D DNA MER2_type -38 567 2 1239 169 36 10 chr5 50597019 50597327 -152488205 + L1MCa LINE L1 2117 2432 -3994 1365 171 98 0 chr5 50597328 50597602 -152487930 + L1MC1 LINE L1 6029 6329 -4 2156 109 0 3 chr5 50598408 50598731 -152486801 - AluSg SINE Alu 0 322 1 881 233 79 19 chr5 50599060 50599398 -152486134 - MSTD LTR MaLR -6 390 1 2457 58 10 0 chr5 50600404 50600699 -152484833 - AluY SINE Alu -13 298 1 24 0 0 0 chr5 50600742 50600766 -152484766 + AT_rich Low_complexity Low_complexity 1 24 0 205 173 74 0 chr5 50601421 50601502 -152484030 + (TATAA)n Simple_repeat Simple_repeat 3 89 0 261 330 11 11 chr5 50601932 50602023 -152483509 + Zaphod DNA AcHobo 1 91 -3940 1523 187 42 3 chr5 50602062 50602386 -152483146 + AluJb SINE Alu 1 312 0 387 73 0 0 chr5 50602487 50602542 -152482990 + (TG)n Simple_repeat Simple_repeat 2 56 0 335 235 141 0 chr5 50602941 50603026 -152482506 + Zaphod DNA AcHobo 3935 4031 0 608 319 82 14 chr5 50603464 50603840 -152481692 - L2 LINE L2 -278 3035 2626 1441 179 7 26 chr5 50604109 50604382 -152481150 - AluJb SINE Alu -44 268 1 34 0 0 0 chr5 50604607 50604641 -152480891 + AT_rich Low_complexity Low_complexity 1 34 0 297 303 11 0 chr5 50604646 50604735 -152480797 - Charlie7 DNA MER1_type -2517 95 6 216 196 54 0 chr5 50605250 50605306 -152480226 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 867 168 78 8 chr5 50607430 50607724 -152477808 - LTR47A LTR ERVL -86 366 1 972 178 12 100 chr5 50607741 50607982 -152477550 - MER4B-int LTR ERV1 -699 6059 5840 315 252 7 72 chr5 50608011 50608150 -152477382 - MER4B-int LTR ERV1 -918 5840 5711 192 77 0 0 chr5 50608313 50608339 -152477193 + (T)n Simple_repeat Simple_repeat 1 26 0 422 125 29 87 chr5 50608339 50608402 -152477130 - MER4D LTR ERV1 -32 840 784 589 45 22 11 chr5 50608402 50608491 -152477041 + (TTTTA)n Simple_repeat Simple_repeat 1 90 0 422 125 29 87 chr5 50608491 50608531 -152477001 - MER4D LTR ERV1 -88 784 743 42896 47 5 0 chr5 50608531 50614592 -152470940 - L1PA3 LINE L1 -64 6091 3 1636 146 86 50 chr5 50615122 50615484 -152470048 - THE1C LTR MaLR 0 375 1 9555 128 12 41 chr5 50615484 50615663 -152469869 - THE1C-int LTR MaLR 0 1580 1397 1557 121 0 13 chr5 50615663 50615894 -152469638 + AluY SINE Alu 84 311 0 9555 128 12 41 chr5 50615894 50617340 -152468192 - THE1C-int LTR MaLR -183 1397 3 1706 180 44 25 chr5 50617357 50617718 -152467814 - THE1C LTR MaLR -7 368 1 210 150 0 0 chr5 50617989 50618029 -152467503 + (GA)n Simple_repeat Simple_repeat 1 40 0 22 35 0 0 chr5 50618034 50618063 -152467469 + AT_rich Low_complexity Low_complexity 1 29 0 1578 226 11 88 chr5 50619125 50619447 -152466085 - L1MCa LINE L1 -3434 2992 2738 1966 102 0 14 chr5 50619447 50619722 -152465810 - AluY SINE Alu -7 304 34 1578 226 11 88 chr5 50619722 50620013 -152465519 - L1MCa LINE L1 -3688 2738 2426 1157 85 18 6 chr5 50620015 50620180 -152465352 + MER30 DNA MER1_type 1 167 -63 341 250 36 0 chr5 50620318 50620430 -152465102 - L1MCa LINE L1 -4253 2173 2058 5975 201 74 8 chr5 50620433 50621634 -152463898 - L1MCa LINE L1 -4653 1954 460 2035 118 33 13 chr5 50621634 50621940 -152463592 - AluSq SINE Alu -1 312 1 5975 201 74 8 chr5 50621940 50622171 -152463361 - L1MCa LINE L1 -6147 460 246 681 168 0 0 chr5 50622206 50622319 -152463213 - FRAM SINE Alu -1 175 63 967 238 21 8 chr5 50622414 50622649 -152462883 - L1MCa LINE L1 -6188 238 1 1257 209 4 48 chr5 50623808 50624081 -152461451 + AluJo SINE Alu 1 261 -51 8891 211 40 28 chr5 50624081 50625418 -152460114 - L1PA15-16 LINE L1 -1759 5103 3784 2105 93 4 0 chr5 50625418 50625686 -152459846 - AluSg SINE Alu -9 301 33 8891 211 40 28 chr5 50625686 50626742 -152458790 - L1PA15-16 LINE L1 -3078 3784 2742 378 0 0 0 chr5 50626742 50626784 -152458748 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7068 50 3 17 chr5 50626784 50628166 -152457366 - L1PA7 LINE L1 -16 6138 4764 8891 211 40 28 chr5 50628166 50631744 -152453788 - L1PA15-16 LINE L1 -4119 2743 6 22 0 0 0 chr5 50632319 50632341 -152453191 + AT_rich Low_complexity Low_complexity 1 22 0 1911 93 12 4 chr5 50632987 50633244 -152452288 - AluSq SINE Alu -11 302 44 730 316 20 0 chr5 50635978 50636231 -152449301 + MIR SINE MIR 5 262 0 24 0 0 0 chr5 50637350 50637374 -152448158 + AT_rich Low_complexity Low_complexity 1 24 0 1271 101 11 17 chr5 50638773 50638952 -152446580 - AluSq SINE Alu -2 311 134 790 316 36 45 chr5 50639826 50640360 -152445172 + L2 LINE L2 2059 2587 -727 229 353 72 13 chr5 50640366 50640519 -152445013 + MIR SINE MIR 73 234 -28 1600 181 65 6 chr5 50641661 50641986 -152443546 - L1MC1 LINE L1 -2 6331 5988 244 301 126 5 chr5 50642518 50642616 -152442916 + MIR SINE MIR 24 131 -77 216 97 0 0 chr5 50643901 50643932 -152441600 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 211 333 51 68 chr5 50644659 50644995 -152440537 + L2 LINE L2 1941 2270 -1044 1836 31 5 5 chr5 50646113 50646357 -152439175 + L1PA3 LINE L1 5922 6165 0 21 57 0 0 chr5 50646733 50646768 -152438764 + AT_rich Low_complexity Low_complexity 1 35 0 26 64 0 0 chr5 50647638 50647685 -152437847 + AT_rich Low_complexity Low_complexity 1 47 0 180 241 51 89 chr5 50648377 50648456 -152437076 - L2 LINE L2 -36 3277 3202 26 0 0 0 chr5 50649924 50649950 -152435582 + AT_rich Low_complexity Low_complexity 1 26 0 6932 34 5 1 chr5 50650017 50650854 -152434678 + L1PA3 LINE L1 4355 5194 -952 * 42840 33 21 1 chr5 50650853 50656883 -152428649 + L1PA2 LINE L1 1 6155 0 7624 27 1 0 chr5 50656894 50657871 -152427661 + L1PA3 LINE L1 5175 6152 -3 213 329 51 70 chr5 50659031 50659189 -152426343 + L2 LINE L2 3118 3272 0 199 363 39 49 chr5 50659256 50659460 -152426072 + L3 LINE CR1 1065 1266 -311 347 335 20 55 chr5 50660262 50660462 -152425070 - MIR SINE MIR -50 212 20 1807 138 72 33 chr5 50660621 50660982 -152424550 + THE1C LTR MaLR 1 375 0 460 304 154 37 chr5 50661641 50662075 -152423457 - L2 LINE L2 -757 2557 2073 207 0 0 0 chr5 50662633 50662656 -152422876 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 235 376 20 27 chr5 50663591 50663740 -152421792 + L2 LINE L2 2942 3089 -183 232 356 48 19 chr5 50663866 50663970 -152421562 + L2 LINE L2 3144 3250 -22 2923 207 135 14 chr5 50665228 50666072 -152419460 - L1MC3 LINE L1 0 7785 6840 230 93 0 23 chr5 50666545 50666588 -152418944 + (TA)n Simple_repeat Simple_repeat 2 43 0 651 208 0 31 chr5 50667206 50667336 -152418196 + FLAM_C SINE Alu 1 126 -17 21 0 0 0 chr5 50667342 50667363 -152418169 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr5 50668826 50668856 -152416676 + AT_rich Low_complexity Low_complexity 1 30 0 201 191 59 0 chr5 50669292 50669360 -152416172 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 375 316 53 81 chr5 50669475 50669760 -152415772 + L2 LINE L2 2987 3263 -9 441 54 0 0 chr5 50670384 50670440 -152415092 + (CA)n Simple_repeat Simple_repeat 2 57 0 640 305 63 5 chr5 50671539 50671762 -152413770 + MIR SINE MIR 8 243 -19 21 89 0 0 chr5 50672737 50672793 -152412739 + AT_rich Low_complexity Low_complexity 1 56 0 1768 194 47 6 chr5 50674422 50674762 -152410770 + MLT1A1 LTR MaLR 12 365 0 351 65 0 0 chr5 50674772 50674818 -152410714 + (TA)n Simple_repeat Simple_repeat 2 47 0 316 205 46 178 chr5 50675056 50675315 -152410217 - L2 LINE L2 -1 3312 3088 317 318 136 11 chr5 50675358 50675534 -152409998 - L1ME LINE L1 -382 5739 5542 34 42 0 0 chr5 50675631 50675679 -152409853 + AT_rich Low_complexity Low_complexity 1 48 0 1821 162 0 13 chr5 50676181 50676484 -152409048 - AluJo SINE Alu -11 301 3 2062 145 0 3 chr5 50677094 50677398 -152408134 + AluSx SINE Alu 1 303 -9 2105 116 7 0 chr5 50677949 50678242 -152407290 + AluSp SINE Alu 3 297 -16 23 54 0 0 chr5 50678621 50678658 -152406874 + AT_rich Low_complexity Low_complexity 1 37 0 181 250 62 21 chr5 50678667 50678715 -152406817 - MIR SINE MIR -170 92 43 1398 294 136 43 chr5 50678779 50680285 -152405247 - HAL1 LINE L1 -55 2452 807 271 309 24 32 chr5 50680833 50680956 -152404576 + MIR3 SINE MIR 40 161 -47 2635 169 34 20 chr5 50681136 50681688 -152403844 + L1MB8 LINE L1 5618 6177 -1 917 81 0 0 chr5 50681705 50681829 -152403703 + L1PA11 LINE L1 6051 6174 0 21 0 0 0 chr5 50681948 50681969 -152403563 + AT_rich Low_complexity Low_complexity 1 21 0 431 369 54 22 chr5 50682023 50682375 -152403157 - L2 LINE L2 -256 3016 2660 21 0 0 0 chr5 50682743 50682764 -152402768 + AT_rich Low_complexity Low_complexity 1 21 0 294 291 43 7 chr5 50689491 50689632 -152395900 + L1ME LINE L1 5672 5817 -304 2112 110 3 10 chr5 50690474 50690774 -152394758 - AluSx SINE Alu -14 298 1 1622 76 5 9 chr5 50691070 50691294 -152394238 - L1PA8 LINE L1 0 6172 5950 264 308 59 11 chr5 50691307 50691580 -152393952 - L1M4 LINE L1 -1555 4591 4306 32 43 0 0 chr5 50692977 50693023 -152392509 + AT_rich Low_complexity Low_complexity 1 46 0 1002 317 29 63 chr5 53695558 53696069 -149389463 + L2 LINE L2 2820 3313 0 18907 80 2 9 chr5 53696119 53698633 -149386899 + L1P LINE L1 1 2495 -3651 5677 115 108 85 chr5 53698635 53700130 -149385402 + pTR5 LTR ERV1 743 2438 0 36662 95 4 11 chr5 53700133 53705114 -149380418 + HERV9 LTR ERV1 1 4944 -3455 665 130 235 12 chr5 53705115 53705362 -149380170 + HERV9 LTR ERV1 840 1141 -5755 356 161 0 0 chr5 53705360 53705422 -149380110 + HERV9 LTR ERV1 7503 7564 -835 * 6277 106 71 56 chr5 53705418 53707368 -149378164 + pTR5 LTR ERV1 66 8399 0 23319 76 1 3 chr5 53707372 53711009 -149374523 + L1PA4 LINE L1 2501 6154 -1 1084 175 5 5 chr5 53711044 53712144 -149373388 + ALR/Alpha Satellite centromeric 1 1099 -29 1042 166 1 0 chr5 53712244 53712970 -149372562 + ALR/Alpha Satellite centromeric 1 726 -26 5400 82 1 0 chr5 53713016 53713700 -149371832 - L1PA4 LINE L1 0 6155 5471 1114 176 4 3 chr5 53713700 53715822 -149369710 + ALR/Alpha Satellite centromeric 1 2123 -49 274 229 74 25 chr5 53716004 53716126 -149369406 + ALR/Alpha Satellite centromeric 32 159 -12 1250 159 1 4 chr5 53716237 53720469 -149365063 - ALR/Alpha Satellite centromeric 0 4222 1 23490 76 2 3 chr5 53720481 53723537 -149361995 + L1P LINE L1 7 3059 -3087 1165 167 5 1 chr5 53723551 53728796 -149356736 - ALR/Alpha Satellite centromeric -1 5262 1 18192 73 6 2 chr5 53728964 53731525 -149354007 + L1P2 LINE L1 2955 5524 -630 1117 161 5 8 chr5 53731625 53731663 -149353869 - ALR/Alpha Satellite centromeric 0 3278 3241 4661 55 7 40 chr5 53731663 53732268 -149353264 + L1PA4 LINE L1 5568 6152 -3 1117 161 5 8 chr5 53732268 53734915 -149350617 - ALR/Alpha Satellite centromeric -37 3241 1 1233 159 5 4 chr5 53735056 53740238 -149345294 - ALR/Alpha Satellite centromeric -8 5190 1 24703 70 9 0 chr5 53740338 53743525 -149342007 - L1P LINE L1 -2929 3217 2 1497 289 46 45 chr5 53743529 53744670 -149340862 - L1M3d LINE L1 -4752 1149 1 1561 128 0 0 chr5 53745510 53745728 -149339804 + AluSx SINE Alu 1 218 -94 246 62 0 0 chr5 53745742 53745774 -149339758 + (A)n Simple_repeat Simple_repeat 1 32 0 3902 34 21 0 chr5 53745987 53746459 -149339073 - L1PA4 LINE L1 -293 5862 5381 2456 253 25 90 chr5 53746458 53747921 -149337611 - L1MDb LINE L1 -2482 3924 2558 * 186 71 0 0 chr5 53747923 53747951 -149337581 + (TA)n Simple_repeat Simple_repeat 1 28 0 2592 260 95 31 chr5 53747965 53749587 -149335945 - L1MDb LINE L1 -3945 2461 776 30 27 0 0 chr5 53750351 53750388 -149335144 + AT_rich Low_complexity Low_complexity 1 37 0 188 408 15 31 chr5 53750496 53750626 -149334906 - MIR SINE MIR -128 134 7 291 114 0 0 chr5 53751226 53751270 -149334262 + (TC)n Simple_repeat Simple_repeat 1 44 0 25 0 0 0 chr5 53751312 53751337 -149334195 + AT_rich Low_complexity Low_complexity 1 25 0 181 360 0 0 chr5 53751362 53751412 -149334120 - MIR SINE MIR -120 88 39 382 264 80 25 chr5 53751425 53751588 -149333944 + MIR SINE MIR 88 259 -3 1463 119 0 4 chr5 53754069 53754296 -149331236 - pTR5 LTR ERV1 -2041 397 172 281 293 10 0 chr5 53754298 53754397 -149331135 - LTR30 LTR ERV1 -79 643 544 417 86 0 0 chr5 53754401 53754459 -149331073 - pTR5 LTR ERV1 -417 2021 1964 3541 39 0 5 chr5 53754469 53754907 -149330625 - L1PA3 LINE L1 0 6155 5720 19063 35 1 0 chr5 53754909 53757472 -149328060 - L1PA3 LINE L1 -552 5603 3039 16198 57 1 0 chr5 53757472 53759551 -149325981 + L1PA3 LINE L1 963 3043 -3103 3230 168 37 57 chr5 53759551 53760390 -149325142 - pTR5 LTR ERV1 -490 1523 5 922 257 43 27 chr5 53761424 53761905 -149323627 + MER66A LTR ERV1 90 468 -10 388 274 91 43 chr5 53762474 53762682 -149322850 - L1MC4 LINE L1 -120 7922 7705 213 256 107 8 chr5 53763569 53763667 -149321865 + MIR SINE MIR 84 192 -70 182 211 26 0 chr5 53764742 53764780 -149320752 - L2 LINE L2 -17 3296 3258 184 290 53 46 chr5 53764879 53765010 -149320522 - MIR3 SINE MIR -67 141 10 2018 125 0 0 chr5 53765557 53765887 -149319645 + AluSx SINE Alu 1 330 0 493 276 9 0 chr5 53766667 53766772 -149318760 + MER5A DNA MER1_type 4 109 -80 19894 46 3 10 chr5 53766810 53770130 -149315402 - L1PA3 LINE L1 -4 6151 2847 1194 154 5 1 chr5 53770231 53772649 -149312883 + ALR/Alpha Satellite centromeric 1 2427 -26 39944 75 2 5 chr5 53772655 53778822 -149306710 + L1PA3 LINE L1 5 6152 -3 1249 150 6 3 chr5 53778828 53783511 -149302021 + ALR/Alpha Satellite centromeric 1 5958 -1560 6448 81 4 16 chr5 53783511 53784760 -149300772 - L1PA4 LINE L1 -3 6152 4909 1249 150 6 3 chr5 53784760 53786310 -149299222 + ALR/Alpha Satellite centromeric 5958 7502 -16 1891 26 18 0 chr5 53786310 53786539 -149298993 - L1PA3 LINE L1 -1 6154 5922 37856 58 34 2 chr5 53786539 53791467 -149294065 - L1P LINE L1 -1059 5087 3 1129 155 4 2 chr5 53791474 53795735 -149289797 + ALR/Alpha Satellite centromeric 1 4269 -26 37689 70 5 3 chr5 53795738 53800032 -149285500 - L1PA3 LINE L1 -5 6150 1840 2038 119 7 0 chr5 53800032 53800326 -149285206 + AluY SINE Alu 1 296 -15 37689 70 5 3 chr5 53800326 53801822 -149283710 - L1PA3 LINE L1 -4315 1840 348 1271 147 2 1 chr5 53801830 53804093 -149281439 + ALR/Alpha Satellite centromeric 1 2265 -7 1281 148 4 1 chr5 53804106 53806647 -149278885 + ALR/Alpha Satellite centromeric 1 2548 -7 1243 143 3 1 chr5 53806660 53809269 -149276263 + ALR/Alpha Satellite centromeric 1 2614 -26 1196 155 5 2 chr5 53809369 53828009 -149257523 + ALR/Alpha Satellite centromeric 1 18692 -68 23095 77 1 2 chr5 53828023 53831079 -149254453 - L1P LINE L1 -3087 3059 7 1219 163 3 1 chr5 53831091 53846755 -149238777 + ALR/Alpha Satellite centromeric 1 15695 -30 6770 75 3 0 chr5 53846757 53847809 -149237723 - L1PA3 LINE L1 -1 6154 5103 10563 46 1 1 chr5 53847809 53849124 -149236408 + L1P LINE L1 3728 5042 -1104 1231 162 4 3 chr5 53849124 53872792 -149212740 + ALR/Alpha Satellite centromeric 1 23982 -2711 2713 17 0 0 chr5 53872792 53873089 -149212443 - AluYa5 SINE Alu -14 297 1 1231 162 4 3 chr5 53873089 53875803 -149209729 + ALR/Alpha Satellite centromeric 23982 26693 0 1105 159 4 1 chr5 53875903 53878710 -149206822 + ALR/Alpha Satellite centromeric 1 2814 -26 22 0 0 0 chr5 53878710 53878732 -149206800 + AT_rich Low_complexity Low_complexity 1 22 0 325 43 0 0 chr5 53878732 53878778 -149206754 - L1PA3 LINE L1 0 6155 6110 677 34 11 0 chr5 53878778 53878867 -149206665 + L1PA3 LINE L1 5952 6041 -114 1281 155 4 4 chr5 53878867 53883756 -149201776 + ALR/Alpha Satellite centromeric 1 4888 -21 1084 173 5 0 chr5 53883856 53885419 -149200113 + ALR/Alpha Satellite centromeric 1 1570 -4 1267 138 3 1 chr5 53885548 53889172 -149196360 - ALR/Alpha Satellite centromeric 0 3631 1 1211 153 3 1 chr5 53889185 53891171 -149194361 - ALR/Alpha Satellite centromeric 0 1990 1 10570 46 1 1 chr5 53891171 53892486 -149193046 - L1P LINE L1 -1104 5042 3728 6715 77 3 0 chr5 53892486 53892636 -149192896 + L1PA3 LINE L1 5103 6150 -1 6757 76 3 0 chr5 53892636 53893530 -149192002 + L1PA3 LINE L1 5254 6150 -5 1051 178 1 2 chr5 53893531 53895150 -149190382 - ALR/Alpha Satellite centromeric -23 1616 1 41464 63 3 1 chr5 53895185 53901322 -149184210 - L1PA3 LINE L1 0 6155 9 1065 161 2 3 chr5 53901327 53901969 -149183563 - ALR/Alpha Satellite centromeric 0 641 1 2436 84 59 3 chr5 53902657 53903012 -149182520 + L1PA6 LINE L1 5775 6149 -5 207 0 0 0 chr5 53903409 53903432 -149182100 + (TG)n Simple_repeat Simple_repeat 2 24 0 2326 159 20 32 chr5 53903442 53903881 -149181651 + Tigger2a DNA MER2_type 1 434 0 1258 286 88 0 chr5 53904704 53905033 -149180499 - MLT1E2 LTR MaLR -133 493 136 1208 233 95 75 chr5 53905256 53905887 -149179645 + L1ME3 LINE L1 551 1194 -4851 4457 20 7 0 chr5 53905911 53906565 -149178967 - L1PA2 LINE L1 -378 5777 5117 3194 29 5 0 chr5 53906565 53906943 -149178589 + L1PA2 LINE L1 5772 6152 -3 712 210 34 26 chr5 53906945 53907178 -149178354 + L1ME3 LINE L1 1212 1446 -5118 666 220 0 43 chr5 53907187 53907328 -149178204 + FRAM SINE Alu 20 154 -22 586 246 193 17 chr5 53907330 53907393 -149178139 + L1ME3 LINE L1 1481 1532 -5032 183 42 0 0 chr5 53907393 53907417 -149178115 + (CA)n Simple_repeat Simple_repeat 2 25 0 586 246 193 17 chr5 53907417 53907654 -149177878 + L1ME3 LINE L1 1532 1834 -4730 308 211 156 9 chr5 53907698 53907807 -149177725 + L1ME3 LINE L1 1966 2090 -4474 272 238 0 63 chr5 53907966 53908029 -149177503 - MER5A DNA MER1_type 0 189 131 35470 67 32 9 chr5 53908042 53912909 -149172623 + L1P LINE L1 7 4985 -1161 18680 52 1 0 chr5 53913070 53916264 -149169268 + L1PA4 LINE L1 2955 6152 -3 414 226 0 0 chr5 53916267 53916360 -149169172 + L1ME3 LINE L1 4915 5007 -1557 1206 214 46 61 chr5 53916610 53916914 -149168618 + L1ME3 LINE L1 4964 5263 -1301 2043 119 0 11 chr5 53916914 53917226 -149168306 - AluSq SINE Alu 0 311 3 1206 214 46 61 chr5 53917226 53917312 -149168220 + L1ME3 LINE L1 5263 5349 -1215 267 162 59 15 chr5 53917324 53917392 -149168140 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 180 0 0 0 chr5 53917402 53917422 -149168110 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 616 197 0 17 chr5 53917896 53918013 -149167519 - MLT1A1 LTR MaLR -1 653 539 26 0 0 0 chr5 53918239 53918265 -149167267 + AT_rich Low_complexity Low_complexity 1 26 0 607 236 56 0 chr5 53918442 53918603 -149166929 - LTR33A LTR ERVL -37 486 317 1121 212 35 111 chr5 53918604 53918981 -149166551 - MLT1A1 LTR MaLR -17 348 1 3232 188 7 8 chr5 53920023 53920624 -149164908 + L1PA16 LINE L1 5542 6141 -25 36 40 0 0 chr5 53920869 53920919 -149164613 + AT_rich Low_complexity Low_complexity 1 50 0 25 31 0 0 chr5 53921164 53921196 -149164336 + AT_rich Low_complexity Low_complexity 1 32 0 29 28 0 0 chr5 53921955 53921991 -149163541 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr5 53922036 53922060 -149163472 + AT_rich Low_complexity Low_complexity 1 24 0 977 233 122 14 chr5 53922172 53922541 -149162991 + L1ME3 LINE L1 5882 6290 -290 368 375 122 0 chr5 53922597 53922842 -149162690 + L1MEc LINE L1 110 384 -6012 307 259 61 46 chr5 53922854 53922985 -149162547 + MER94 DNA DNA 2 134 0 16908 86 3 3 chr5 53923361 53925640 -149159892 - L1P LINE L1 -3859 2287 9 1065 161 2 3 chr5 53925645 53926287 -149159245 - ALR/Alpha Satellite centromeric 0 641 1 9953 50 33 0 chr5 53926834 53928565 -149156967 - L1PA4 LINE L1 -312 5843 4056 * 16414 54 1 0 chr5 53928554 53930669 -149154863 + L1PA4 LINE L1 1927 4044 -2102 1399 200 3 32 chr5 53931853 53932138 -149153394 - AluJo SINE Alu -10 302 26 25 0 0 0 chr5 53932345 53932370 -149153162 + AT_rich Low_complexity Low_complexity 1 25 0 563 223 81 129 chr5 53933178 53933854 -149151678 - HAL1b LINE L1 -20 1328 685 680 156 78 39 chr5 53933945 53934124 -149151408 + MER53 DNA DNA 2 187 -2 409 248 0 41 chr5 53934986 53935131 -149150401 + C-rich Low_complexity Low_complexity 1 139 0 1635 104 16 79 chr5 53935417 53935734 -149149798 - L1P4 LINE L1 -608 5557 5261 2553 151 27 2 chr5 53935734 53936182 -149149350 + L1PA15 LINE L1 5704 6163 -2 26 30 0 0 chr5 53936699 53936732 -149148800 + AT_rich Low_complexity Low_complexity 1 33 0 189 147 0 0 chr5 53937400 53937434 -149148098 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr5 53937723 53937751 -149147781 + AT_rich Low_complexity Low_complexity 1 28 0 23 97 0 0 chr5 53939038 53939110 -149146422 + AT_rich Low_complexity Low_complexity 1 72 0 655 203 155 37 chr5 53939676 53939863 -149145669 + MIR SINE MIR 4 212 -50 10313 147 72 9 chr5 53940342 53942129 -149143403 + Tigger1 DNA MER2_type 20 1919 -499 5803 21 0 0 chr5 53942134 53942806 -149142726 + L1PA4 LINE L1 5306 5977 -178 1871 165 49 0 chr5 53942909 53943237 -149142295 + Tigger1 DNA MER2_type 2075 2418 0 231 257 0 14 chr5 53943237 53943272 -149142260 + LTR66 LTR ERVL 406 439 -171 2035 199 5 0 chr5 53943978 53944389 -149141143 - L1PB4 LINE L1 -2 6154 5742 1654 179 14 10 chr5 53944403 53944694 -149140838 - AluJb SINE Alu -20 292 1 2952 152 45 12 chr5 53944712 53944963 -149140569 - L1MA9 LINE L1 -34 6278 6028 871 251 71 29 chr5 53944963 53945314 -149140218 - L1PB4 LINE L1 -133 6023 5658 378 57 0 0 chr5 53946396 53946449 -149139083 + (CA)n Simple_repeat Simple_repeat 1 53 0 770 270 47 33 chr5 53946641 53946941 -149138591 + MER90 LTR ERV1 3 306 -308 1048 317 29 63 chr5 53947193 53947704 -149137828 + L2 LINE L2 2820 3313 0 40306 60 3 5 chr5 53947754 53952986 -149132546 + L1P LINE L1 1 5220 -926 214 139 93 0 chr5 53953196 53953239 -149132293 + L2 LINE L2 3267 3313 0 467 345 12 6 chr5 53953485 53953650 -149131882 + MIR3 SINE MIR 37 202 -6 201 108 0 0 chr5 53954414 53954451 -149131081 + (CA)n Simple_repeat Simple_repeat 2 38 0 26 0 0 0 chr5 53954592 53954618 -149130914 + AT_rich Low_complexity Low_complexity 1 26 0 243 0 0 0 chr5 53954640 53954667 -149130865 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1354 216 21 79 chr5 53954984 53955363 -149130169 - MLT1A1 LTR MaLR -8 357 1 27 0 0 0 chr5 53955616 53955643 -149129889 + AT_rich Low_complexity Low_complexity 1 27 0 2357 183 34 13 chr5 53955733 53956329 -149129203 + L1MA3 LINE L1 2874 3481 -2665 * 4705 207 62 17 chr5 53956325 53958229 -149127303 + L1MA3 LINE L1 4234 6277 -28 243 274 48 24 chr5 53958136 53958260 -149127272 + L1ME1 LINE L1 6035 6161 -5 * 2205 128 36 25 chr5 53958970 53959330 -149126202 + THE1B LTR MaLR 1 364 0 332 70 0 0 chr5 53959330 53959373 -149126159 + THE1B-int LTR MaLR 1 43 -1537 238 301 98 37 chr5 53959412 53959575 -149125957 - MLT1K LTR MaLR -42 546 374 260 298 102 47 chr5 53960315 53960491 -149125041 + MIR3 SINE MIR 14 196 -47 1165 291 68 6 chr5 53960753 53961079 -149124453 + MER70A LTR ERVL 80 425 -47 972 185 60 15 chr5 53961981 53962020 -149123512 + AluJo SINE Alu 82 118 -194 186 43 0 0 chr5 53962020 53962043 -149123489 + (TAA)n Simple_repeat Simple_repeat 2 24 0 972 185 60 15 chr5 53962043 53962203 -149123329 + AluJo SINE Alu 118 290 -22 253 285 83 72 chr5 53962666 53963052 -149122480 + L1MC4a LINE L1 5615 6004 -1804 895 272 23 5 chr5 53963657 53963874 -149121658 - MER58A DNA MER1_type -3 221 1 289 287 28 46 chr5 53963976 53964115 -149121417 - LTR16A LTR ERVL -309 141 3 777 216 72 36 chr5 53964134 53964384 -149121148 - L1MC4a LINE L1 -1317 6491 6233 7242 51 3 26 chr5 53964385 53965518 -149120014 - L1PA5 LINE L1 0 6154 5031 6617 57 3 1 chr5 53965739 53966596 -149118936 - L1PA5 LINE L1 -1101 5045 4187 1197 237 61 65 chr5 53966606 53967210 -149118322 - L1MC4a LINE L1 -1589 6219 5618 351 354 12 21 chr5 53967207 53967546 -149117986 - L1M4 LINE L1 -2284 3862 3527 * 1419 193 77 4 chr5 53968014 53968384 -149117148 + AluSx SINE Alu 1 390 0 882 139 23 8 chr5 53968388 53968721 -149116811 + GA-rich Low_complexity Low_complexity 1 337 0 1727 160 33 13 chr5 53968722 53969029 -149116503 - MER7A DNA MER2_type -35 311 1 1388 226 58 39 chr5 53969106 53969314 -149116218 - L1MD2 LINE L1 -10 6349 6146 2412 229 11 44 chr5 53969314 53969887 -149115645 + MLT2B3 LTR ERVL 1 554 0 273 29 0 0 chr5 53969887 53969921 -149115611 + (TG)n Simple_repeat Simple_repeat 2 35 0 1388 226 58 39 chr5 53969921 53970092 -149115440 - L1MD2 LINE L1 -212 6147 5962 2170 236 67 46 chr5 53970094 53971465 -149114067 - L1MD2 LINE L1 -743 5403 4132 2715 169 40 15 chr5 53971511 53972055 -149113477 + MER74A LTR ERVL 1 558 0 419 292 125 13 chr5 53972217 53972673 -149112859 - L1MD2 LINE L1 -3510 2636 2130 237 272 92 73 chr5 53973168 53973712 -149111820 - HAL1b LINE L1 -779 569 16 988 159 58 88 chr5 53974172 53974398 -149111134 - AluJo SINE Alu -14 298 80 2766 88 3 3 chr5 53974945 53975320 -149110212 + THE1C LTR MaLR 1 375 0 257 128 21 0 chr5 53977079 53977126 -149108406 + CT-rich Low_complexity Low_complexity 1 48 0 232 147 21 11 chr5 53977256 53977345 -149108187 + CT-rich Low_complexity Low_complexity 1 89 0 488 309 40 0 chr5 53977794 53977943 -149107589 + L2 LINE L2 2608 2762 -552 759 311 52 26 chr5 53978021 53978365 -149107167 + MLT1J LTR MaLR 95 447 -64 396 125 0 0 chr5 53978370 53978434 -149107098 + (GA)n Simple_repeat Simple_repeat 1 64 0 336 19 57 0 chr5 53978434 53978487 -149107045 + (TA)n Simple_repeat Simple_repeat 2 57 0 339 299 0 0 chr5 53978530 53978617 -149106915 - MLT1J LTR MaLR -330 181 95 591 257 42 0 chr5 53978700 53978844 -149106688 - L2 LINE L2 -557 2757 2608 202 233 0 0 chr5 53979092 53979135 -149106397 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 734 311 152 17 chr5 53979167 53979645 -149105887 + L2 LINE L2 2762 3297 -16 283 315 74 0 chr5 53980813 53980921 -149104611 + L2 LINE L2 3189 3304 -9 216 0 0 0 chr5 53981056 53981080 -149104452 + (A)n Simple_repeat Simple_repeat 1 24 0 246 62 0 0 chr5 53981403 53981435 -149104097 + (T)n Simple_repeat Simple_repeat 1 32 0 1561 128 0 0 chr5 53981449 53981667 -149103865 - AluSx SINE Alu -94 218 1 1444 290 45 44 chr5 53982507 53983648 -149101884 + L1M4 LINE L1 1 1149 -4752 18681 81 9 0 chr5 53983652 53986123 -149099409 + L1P LINE L1 2 2495 -3651 5637 112 113 91 chr5 53986125 53987620 -149097912 + pTR5 LTR ERV1 743 2438 0 32511 92 3 11 chr5 53987623 53992606 -149092926 + HERV9 LTR ERV1 1 4944 -3455 665 130 235 12 chr5 53992607 53992854 -149092678 + HERV9 LTR ERV1 840 1141 -5755 356 161 0 0 chr5 53992852 53992914 -149092618 + HERV9 LTR ERV1 7503 7564 -835 * 6277 106 71 56 chr5 53992910 53994860 -149090672 + pTR5 LTR ERV1 66 8399 0 24696 42 2 1 chr5 53994864 53998515 -149087017 + L1PA4 LINE L1 2501 6151 -4 434 202 0 19 chr5 53998515 53998619 -149086913 + L1M4 LINE L1 2742 2843 -3127 * 1032 212 50 17 chr5 53998612 53998853 -149086679 + L1P LINE L1 3698 3946 -2200 690 304 14 0 chr5 53998889 53999106 -149086426 + L1MB1 LINE L1 2418 2637 -3333 555 208 35 0 chr5 53999110 53999254 -149086278 + L1MB1 LINE L1 4284 4432 -1538 3597 166 91 10 chr5 53999275 53999875 -149085657 + L1MB1 LINE L1 4598 5148 -844 2006 160 7 0 chr5 53999875 54000181 -149085351 + AluJo SINE Alu 3 310 -2 3597 166 91 10 chr5 54000181 54000773 -149084759 + L1MB1 LINE L1 5148 5879 -113 1061 203 5 0 chr5 54001029 54001231 -149084301 + AluJb SINE Alu 110 312 0 732 121 0 16 chr5 54001239 54001375 -149084157 + L1MB1 LINE L1 5884 5992 0 3558 206 59 65 chr5 54002362 54003055 -149082477 - L1MD2 LINE L1 -1 6241 5545 2143 123 3 16 chr5 54003055 54003371 -149082161 + AluSx SINE Alu 1 312 0 3558 206 59 65 chr5 54003371 54003887 -149081645 - L1MD2 LINE L1 -697 5545 5027 336 140 60 90 chr5 54003905 54004005 -149081527 - L1MB2 LINE L1 -1 6170 6074 * 32201 103 24 20 chr5 54004001 54009752 -149075780 + L1P2 LINE L1 165 6009 -460 225 211 0 0 chr5 54009963 54010015 -149075517 + (CA)n Simple_repeat Simple_repeat 1 52 0 536 127 0 13 chr5 54010731 54010810 -149074722 - AluJb SINE Alu -39 273 196 227 192 101 91 chr5 54010851 54010950 -149074582 - MIR SINE MIR -155 107 8 496 141 14 0 chr5 54011461 54011549 -149073983 + L1MC4 LINE L1 6868 7032 -851 540 303 17 29 chr5 54012138 54012313 -149073219 + MER5B DNA MER1_type 3 175 -3 267 253 24 12 chr5 54012518 54012601 -149072931 + MLT1G1 LTR MaLR 100 183 -412 1936 112 6 70 chr5 54012605 54012917 -149072615 + AluSg SINE Alu 1 292 -18 266 276 32 57 chr5 54012959 54013082 -149072450 + MLT1G1 LTR MaLR 173 292 -298 1625 227 72 8 chr5 54013082 54013483 -149072049 - MER95 LTR ERV -4 427 1 3540 197 20 30 chr5 54013510 54013956 -149071576 - L1 LINE L1 -955 6610 6161 3012 110 52 9 chr5 54013956 54014403 -149071129 - L1PA11 LINE L1 0 6174 5709 3540 197 20 30 chr5 54014403 54015528 -149070004 - L1 LINE L1 -1404 6161 3083 1372 112 41 0 chr5 54015528 54015724 -149069808 - LTR12 LTR ERV1 -134 580 377 328 299 17 0 chr5 54015725 54015842 -149069690 - LTR30 LTR ERV1 -80 642 524 873 132 132 0 chr5 54015842 54016008 -149069524 - LTR12 LTR ERV1 -432 2006 2 4316 120 8 0 chr5 54016009 54016627 -149068905 - HERV9 LTR ERV1 0 8399 7777 713 44 0 0 chr5 54016626 54016717 -149068815 + Harlequin LTR ERV1 1630 1720 -5176 * 2017 112 0 38 chr5 54016736 54017050 -149068482 - HERV17 LTR ERV1 -7059 1567 1266 1857 126 30 21 chr5 54017064 54017674 -149067858 - HERV17 LTR ERV1 -3414 4985 703 * 12283 97 9 7 chr5 54017673 54019366 -149066166 - HERV17 LTR ERV1 -5427 2972 1276 1497 91 359 165 chr5 54019369 54019878 -149065654 - LTR12 LTR ERV1 -130 584 1 612 284 60 5 chr5 54019879 54020097 -149065435 - L1 LINE L1 -4479 3086 2857 2476 126 51 0 chr5 54020098 54020472 -149065060 - L1PA14 LINE L1 0 6161 5769 41444 51 23 3 chr5 54020475 54026498 -149059034 - L1PA3 LINE L1 0 6155 8 2294 69 6 38 chr5 54027773 54028091 -149057441 - AluY SINE Alu 0 311 4 2298 116 3 0 chr5 54028307 54028617 -149056915 + AluSx SINE Alu 1 311 -1 307 352 20 15 chr5 54029829 54030028 -149055504 - MER89-int LTR ERV1 -5429 1372 1173 1549 247 56 2 chr5 54030880 54031289 -149054243 - MER95 LTR ERV 0 431 1 1089 234 9 0 chr5 54031363 54031590 -149053942 + MLT1H1 LTR MaLR 327 555 0 21 36 0 0 chr5 54031997 54032025 -149053507 + AT_rich Low_complexity Low_complexity 1 28 0 370 199 24 145 chr5 54032164 54032330 -149053202 + MLT1E1 LTR MaLR 6 151 -503 4421 135 15 126 chr5 54032330 54033868 -149051664 + pTR5 LTR ERV1 753 2606 0 1519 249 43 0 chr5 54033896 54034246 -149051286 + MLT1E1 LTR MaLR 288 652 -2 296 264 142 28 chr5 54034314 54034420 -149051112 + MLT1J LTR MaLR 347 541 -74 16073 59 34 5 chr5 54035011 54037242 -149048290 - L1P LINE L1 -2226 3920 1624 25361 78 12 3 chr5 54037398 54041594 -149043938 + L1PA7 LINE L1 1917 6149 -5 396 161 103 0 chr5 54042941 54043028 -149042504 - MER94 DNA DNA -37 97 2 216 97 0 0 chr5 54043050 54043081 -149042451 + (A)n Simple_repeat Simple_repeat 1 31 0 762 298 28 16 chr5 54043287 54043539 -149041993 + MIR SINE MIR 8 262 0 1577 171 18 11 chr5 54044139 54044413 -149041119 - AluJo SINE Alu -30 282 7 22 35 0 0 chr5 54044758 54044787 -149040745 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr5 54046167 54046197 -149039335 + AT_rich Low_complexity Low_complexity 1 30 0 273 329 167 13 chr5 54049399 54049627 -149035905 + L3 LINE CR1 1179 1441 -136 183 176 0 0 chr5 54049622 54049656 -149035876 + MIR3 SINE MIR 172 205 -3 * 358 328 40 34 chr5 54050215 54050392 -149035140 - MER5B DNA MER1_type 0 178 1 23 0 0 0 chr5 54050393 54050416 -149035116 + AT_rich Low_complexity Low_complexity 1 23 0 462 332 137 9 chr5 54050427 54050638 -149034894 - MIR SINE MIR -15 247 10 22 0 0 0 chr5 54051204 54051226 -149034306 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr5 54051350 54051373 -149034159 + (A)n Simple_repeat Simple_repeat 1 23 0 25 31 0 0 chr5 54052601 54052633 -149032899 + AT_rich Low_complexity Low_complexity 1 32 0 244 327 37 28 chr5 54052799 54052906 -149032626 - MER5A DNA MER1_type -75 114 7 181 219 62 52 chr5 54053188 54053284 -149032248 + L3b LINE CR1 1270 1366 -217 255 217 0 0 chr5 54058029 54058089 -149027443 + GA-rich Low_complexity Low_complexity 1 60 0 257 353 0 33 chr5 54058104 54058226 -149027306 + GA-rich Low_complexity Low_complexity 1 118 0 23 33 0 0 chr5 54059254 54059284 -149026248 + AT_rich Low_complexity Low_complexity 1 30 0 282 154 0 0 chr5 54060524 54060576 -149024956 - L1MB1 LINE L1 -2 6166 6115 458 17 17 0 chr5 54060701 54060760 -149024772 + (CA)n Simple_repeat Simple_repeat 2 61 0 359 273 116 20 chr5 54061006 54061204 -149024328 + LTR48 LTR ERV1 522 738 -49 219 167 0 0 chr5 54061520 54061562 -149023970 + (CA)n Simple_repeat Simple_repeat 2 43 0 1280 260 15 31 chr5 54061580 54062034 -149023498 + L1MC5 LINE L1 6999 7445 -516 2035 102 68 7 chr5 54062047 54062340 -149023192 - AluSq SINE Alu -2 311 1 1249 230 6 25 chr5 54062718 54063035 -149022497 + AluJo SINE Alu 1 311 -1 255 345 125 26 chr5 54063319 54063583 -149021949 + L2 LINE L2 2082 2371 -943 193 147 29 0 chr5 54063862 54063896 -149021636 + MIR SINE MIR 120 154 -108 509 275 100 30 chr5 54064026 54064226 -149021306 - MIR SINE MIR -45 217 4 2109 178 48 11 chr5 54065197 54065630 -149019902 + MER66A LTR ERV1 27 475 -3 190 233 0 0 chr5 54067054 54067097 -149018435 - L2 LINE L2 0 3313 3271 309 51 0 0 chr5 54068011 54068050 -149017482 + (CA)n Simple_repeat Simple_repeat 2 40 0 3507 74 17 11 chr5 54068195 54068670 -149016862 + L1PA10 LINE L1 5680 6157 -11 274 262 101 118 chr5 54068954 54069191 -149016341 + L2 LINE L2 3013 3245 -68 7222 23 2 0 chr5 54069693 54070533 -149014999 + L1PA4 LINE L1 5312 6153 -2 478 265 64 64 chr5 54070676 54070895 -149014637 - MER112 DNA MER1_type -12 248 30 23 33 0 0 chr5 54071273 54071303 -149014229 + AT_rich Low_complexity Low_complexity 1 30 0 421 359 53 6 chr5 54071345 54071665 -149013867 + L1MC4a LINE L1 5563 5897 -1911 709 271 117 107 chr5 54071864 54072771 -149012761 - L1MEd LINE L1 -5193 926 11 808 253 32 5 chr5 54073141 54073327 -149012205 + MER20 DNA MER1_type 7 197 -22 1737 105 0 0 chr5 54074215 54074443 -149011089 - AluSq SINE Alu -65 248 21 661 259 26 26 chr5 54074646 54074839 -149010693 + MIR SINE MIR 8 200 -62 23 0 0 0 chr5 54074882 54074905 -149010627 + AT_rich Low_complexity Low_complexity 1 23 0 1749 197 34 51 chr5 54075301 54075769 -149009763 + MER65C LTR ERV1 2 461 0 302 0 26 0 chr5 54075969 54076007 -149009525 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1303 139 0 0 chr5 54076008 54076195 -149009337 - AluSg/x SINE Alu -32 280 94 2227 100 0 7 chr5 54077364 54077673 -149007859 - AluSc SINE Alu -2 307 1 573 87 0 22 chr5 54078089 54078181 -149007351 + L1PA8 LINE L1 6083 6172 0 288 53 0 0 chr5 54078302 54078340 -149007192 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 362 139 14 0 chr5 54078408 54078480 -149007052 + CT-rich Low_complexity Low_complexity 2 74 0 258 81 0 0 chr5 54078482 54078519 -149007013 + (CA)n Simple_repeat Simple_repeat 1 37 0 193 297 0 68 chr5 54079941 54080015 -149005517 + MIR3 SINE MIR 11 79 -129 231 125 0 0 chr5 54081207 54081247 -149004285 + (A)n Simple_repeat Simple_repeat 1 40 0 2242 107 0 3 chr5 54081273 54081572 -149003960 + AluSg SINE Alu 1 298 -12 562 218 27 0 chr5 54082054 54082164 -149003368 + MER20 DNA MER1_type 1 113 -106 1747 199 35 42 chr5 54082196 54082648 -149002884 - MLT1C LTR MaLR -13 454 6 518 188 69 0 chr5 54082656 54082757 -149002775 + MER20 DNA MER1_type 112 219 0 1286 220 105 15 chr5 54083658 54084592 -149000940 - L1MC4 LINE L1 -139 7903 6735 487 277 58 25 chr5 54084658 54084900 -149000632 - L1MC4 LINE L1 -1333 6709 6460 1905 160 0 0 chr5 54085462 54085749 -148999783 + AluJb SINE Alu 1 287 -25 207 100 0 0 chr5 54085752 54085782 -148999750 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 651 162 14 9 chr5 54085782 54086094 -148999438 - L1MC4 LINE L1 -469 7339 6870 226 192 101 91 chr5 54086608 54086707 -148998825 + MIR SINE MIR 8 107 -155 499 133 0 0 chr5 54086752 54086827 -148998705 + AluJb SINE Alu 199 273 -39 207 220 0 0 chr5 54087543 54087593 -148997939 + (TG)n Simple_repeat Simple_repeat 1 50 0 2417 77 3 0 chr5 54089513 54089823 -148995709 - AluSp SINE Alu -2 311 1 225 94 0 0 chr5 54089948 54089980 -148995552 + (TG)n Simple_repeat Simple_repeat 1 32 0 1381 186 10 53 chr5 54090465 54090766 -148994766 + AluJo SINE Alu 18 305 -7 545 303 17 29 chr5 54090883 54091058 -148994474 - MER5B DNA MER1_type -3 175 3 511 133 0 0 chr5 54091721 54091796 -148993736 - AluJb SINE Alu -39 273 199 186 209 99 99 chr5 54091845 54091936 -148993596 - MIR SINE MIR -164 98 8 644 163 16 0 chr5 54092453 54092591 -148992941 + L1MC4 LINE L1 6868 7073 -795 524 226 30 0 chr5 54092590 54092723 -148992809 + L1MC4a LINE L1 7159 7295 -513 * 207 100 0 0 chr5 54092765 54092795 -148992737 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 1921 160 0 0 chr5 54092798 54093085 -148992447 - AluJb SINE Alu -25 287 1 436 252 58 0 chr5 54093648 54093787 -148991745 + L1MC4 LINE L1 6460 6606 -1436 195 150 0 80 chr5 54093842 54093942 -148991590 + (TATATG)n Simple_repeat Simple_repeat 6 97 0 1825 162 20 6 chr5 54093956 54094307 -148991225 + L1MC4 LINE L1 6735 7090 -952 1145 253 160 17 chr5 54094308 54094889 -148990643 + L1MC4 LINE L1 7240 7903 -139 486 188 69 0 chr5 54095791 54095892 -148989640 - MER20 DNA MER1_type 0 219 112 1605 208 31 38 chr5 54095900 54096352 -148989180 + MLT1C LTR MaLR 6 454 -13 523 218 27 0 chr5 54096384 54096494 -148989038 - MER20 DNA MER1_type -106 113 1 2260 107 0 3 chr5 54096978 54097277 -148988255 - AluSg SINE Alu -12 298 1 240 122 0 0 chr5 54097303 54097344 -148988188 + (T)n Simple_repeat Simple_repeat 1 41 0 1537 208 6 10 chr5 54098471 54098784 -148986748 + AluJo SINE Alu 1 312 0 1634 105 0 0 chr5 54149773 54149983 -148935549 + AluSc SINE Alu 3 212 -97 246 81 0 0 chr5 54149984 54150021 -148935511 + (TAAAAA)n Simple_repeat Simple_repeat 4 40 0 2106 139 0 0 chr5 54151169 54151464 -148934068 + AluSx SINE Alu 1 295 -17 2456 122 5 22 chr5 54151489 54151859 -148933673 + THE1B LTR MaLR 1 364 0 10556 104 3 63 chr5 54151865 54153543 -148931989 + THE1B-int LTR MaLR 4 1580 0 2228 138 11 6 chr5 54153543 54153905 -148931627 + THE1B LTR MaLR 1 364 0 254 316 95 44 chr5 54154296 54154454 -148931078 + MIR SINE MIR 10 175 -87 268 302 180 16 chr5 54155006 54155195 -148930337 + HAL1 LINE L1 306 525 -1982 761 229 7 0 chr5 54155195 54155339 -148930193 - MER45A DNA AcHobo 0 178 34 2037 272 142 15 chr5 54155444 54156496 -148929036 + HAL1 LINE L1 626 1810 -697 559 249 105 71 chr5 54156616 54157054 -148928478 + HAL1 LINE L1 1715 2167 -340 494 286 92 66 chr5 54157099 54157403 -148928129 + L1ME LINE L1 3807 4118 -2028 409 284 91 48 chr5 54157425 54157633 -148927899 + LTR67 LTR ERVL 9 225 -332 341 343 22 0 chr5 54157922 54158059 -148927473 + L1ME LINE L1 4177 4316 -1830 453 270 98 23 chr5 54158183 54158490 -148927042 + L1ME LINE L1 4490 4819 -1327 1987 156 3 0 chr5 54158776 54159078 -148926454 + AluSx SINE Alu 1 303 -9 4722 228 13 16 chr5 54159891 54160926 -148924606 - MER45B DNA AcHobo -2 1038 8 191 114 29 0 chr5 54161364 54161399 -148924133 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 27 29 0 0 chr5 54161581 54161615 -148923917 + AT_rich Low_complexity Low_complexity 1 34 0 43050 48 2 1 chr5 54161615 54167754 -148917778 - L1PA3 LINE L1 -5 6150 4 688 132 0 53 chr5 54168650 54168764 -148916768 - AluSq/x SINE Alu -204 108 1 259 258 108 43 chr5 54168774 54168909 -148916623 + L1ME LINE L1 5525 5677 -444 2073 146 30 28 chr5 54168909 54169272 -148916260 - THE1B LTR MaLR 0 364 1 259 258 108 43 chr5 54169272 54169322 -148916210 + L1ME LINE L1 5677 5722 -399 515 324 82 14 chr5 54169322 54169541 -148915991 + MIR SINE MIR 18 251 -11 25 20 0 59 chr5 54169850 54169901 -148915631 + AT_rich Low_complexity Low_complexity 1 48 0 383 308 39 0 chr5 54170568 54170672 -148914860 - L2 LINE L2 -2 3311 3204 319 303 32 112 chr5 54170734 54170922 -148914610 - MIR SINE MIR -72 190 18 440 227 25 8 chr5 54171726 54171845 -148913687 - MLT2F LTR ERVL 0 663 543 486 270 94 117 chr5 54171940 54172377 -148913155 - MLT1J LTR MaLR -6 505 79 384 22 0 0 chr5 54172377 54172422 -148913110 + (TAA)n Simple_repeat Simple_repeat 2 46 0 2395 86 0 0 chr5 54172489 54172803 -148912729 + L1PA4 LINE L1 1 314 -5832 * 36890 52 6 2 chr5 54172802 54178356 -148907176 + L1PA4 LINE L1 585 6155 0 230 243 71 50 chr5 54178359 54178499 -148907033 - Charlie7 DNA MER1_type -2469 143 1 204 239 0 0 chr5 54178806 54178852 -148906680 + (CATA)n Simple_repeat Simple_repeat 2 47 0 270 313 0 0 chr5 54180869 54180936 -148904596 + polypyrimidine Low_complexity Low_complexity 2 68 0 1860 161 10 0 chr5 54181149 54181447 -148904085 - AluJb SINE Alu -11 301 1 2253 182 57 40 chr5 54181704 54182247 -148903285 - MLT2B3 LTR ERVL 0 554 3 206 298 0 0 chr5 54182300 54182347 -148903185 - L2 LINE L2 -7 3265 3219 234 184 0 0 chr5 54182464 54182502 -148903030 - MER2 DNA MER2_type -307 38 1 562 180 98 16 chr5 54182519 54182641 -148902891 + MLT2F LTR ERVL 7 138 -525 5226 202 16 12 chr5 54182668 54183860 -148901672 + L1 LINE L1 2966 4162 -1984 4989 169 10 8 chr5 54183887 54184971 -148900561 + L1PA16 LINE L1 5080 6166 0 1432 170 11 19 chr5 54184982 54185247 -148900285 + MER2 DNA MER2_type 83 345 0 217 322 172 0 chr5 54185304 54185391 -148900141 + L3 LINE CR1 1027 1128 -449 215 306 122 10 chr5 54185439 54185537 -148899995 + L3 LINE CR1 1250 1358 -219 25 0 0 0 chr5 54186025 54186050 -148899482 + AT_rich Low_complexity Low_complexity 1 25 0 913 9 0 9 chr5 54186446 54186555 -148898977 - L1PA2 LINE L1 -2 6153 6046 4325 173 55 7 chr5 54186889 54187223 -148898309 + MER6 DNA MER2_type 1 318 -547 273 57 0 0 chr5 54187223 54187258 -148898274 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 4325 173 55 7 chr5 54187258 54187749 -148897783 + MER6 DNA MER2_type 318 865 0 459 174 0 0 chr5 54188009 54188095 -148897437 + CT-rich Low_complexity Low_complexity 3 88 0 262 242 87 41 chr5 54188336 54188410 -148897122 - L1M4 LINE L1 -1305 4841 4772 186 43 0 0 chr5 54188410 54188433 -148897099 + (TTA)n Simple_repeat Simple_repeat 3 25 0 262 242 87 41 chr5 54188433 54188483 -148897049 - L1M4 LINE L1 -1374 4772 4726 2409 100 7 0 chr5 54188483 54188793 -148896739 - AluSx SINE Alu 0 312 1 262 242 87 41 chr5 54188793 54188886 -148896646 - L1M4 LINE L1 -1420 4726 4613 597 207 61 96 chr5 54189643 54189750 -148895782 + MIR SINE MIR 72 170 -92 192 40 0 0 chr5 54189750 54189775 -148895757 + (TG)n Simple_repeat Simple_repeat 2 26 0 597 207 61 96 chr5 54189775 54189865 -148895667 + MIR SINE MIR 170 262 0 362 321 82 86 chr5 54191775 54192239 -148893293 - L2 LINE L2 0 3272 2811 1104 69 0 0 chr5 54192278 54192409 -148893123 - AluSp SINE Alu -182 131 1 20605 165 31 14 chr5 54192414 54195906 -148889626 - L1 LINE L1 -817 6748 3117 2117 92 48 0 chr5 54195906 54196199 -148889333 - AluSp SINE Alu -6 307 1 20605 165 31 14 chr5 54196199 54199364 -148886168 - L1 LINE L1 -4448 3117 6 201 147 0 0 chr5 54200304 54200338 -148885194 + (A)n Simple_repeat Simple_repeat 1 34 0 685 149 8 8 chr5 54200482 54200616 -148884916 + GA-rich Low_complexity Low_complexity 3 136 0 814 291 18 9 chr5 54201384 54201607 -148883925 - MIR SINE MIR -26 236 12 22 0 0 0 chr5 54202605 54202627 -148882905 + AT_rich Low_complexity Low_complexity 1 22 0 587 293 77 50 chr5 54202841 54203203 -148882329 + L1MEd LINE L1 73 444 -5675 2192 102 14 0 chr5 54203513 54203808 -148881724 + AluSc SINE Alu 1 299 -10 332 189 151 57 chr5 54204538 54204644 -148880888 + MER63 DNA MER1_type 2 743 -319 247 271 12 47 chr5 54204653 54204738 -148880794 + MER63 DNA MER1_type 977 1058 -2 22 35 0 0 chr5 54204996 54205025 -148880507 + AT_rich Low_complexity Low_complexity 1 29 0 221 308 90 0 chr5 54205025 54205103 -148880429 - L2 LINE L2 0 3313 3229 459 301 64 2 chr5 54205405 54205592 -148879940 + L1ME3A LINE L1 5704 5904 -258 1423 161 33 33 chr5 54205897 54206170 -148879362 - AluJo SINE Alu -25 287 15 1555 179 0 59 chr5 54207647 54207971 -148877561 + AluJo SINE Alu 1 305 -7 4407 42 0 61 chr5 54208061 54208686 -148876846 - L1PA4 LINE L1 -3159 2987 2401 19303 38 1 1 chr5 54208686 54211863 -148873669 + L1PA4 LINE L1 2986 6165 0 415 86 0 0 chr5 54212701 54212759 -148872773 - LTR47A LTR ERVL -53 399 342 3797 147 88 19 chr5 54212763 54213435 -148872097 + MER72 LTR ERV1 5 722 0 689 192 34 85 chr5 54213462 54213639 -148871893 - LTR47A LTR ERVL -112 340 173 292 150 67 0 chr5 54213629 54213689 -148871843 - LTR47A LTR ERVL -388 64 1 * 21 0 0 0 chr5 54214123 54214144 -148871388 + AT_rich Low_complexity Low_complexity 1 21 0 474 184 11 95 chr5 54214398 54214416 -148871116 - L1MA10 LINE L1 0 6334 6317 2757 188 67 83 chr5 54214416 54215293 -148870239 - L1ME2 LINE L1 -9 6155 5293 931 314 72 20 chr5 54215404 54215859 -148869673 + L2 LINE L2 2835 3313 0 230 280 27 13 chr5 54216285 54216360 -148869172 - Charlie8 DNA MER1_type -2197 220 145 201 333 139 11 chr5 54216382 54216562 -148868970 + MIR SINE MIR 58 260 -2 291 143 0 39 chr5 54216759 54216836 -148868696 + (GGAA)n Simple_repeat Simple_repeat 2 75 0 1210 33 6 28 chr5 54216836 54217016 -148868516 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 496 163 30 22 chr5 54217136 54217271 -148868261 + GA-rich Low_complexity Low_complexity 1 136 0 26 30 0 0 chr5 54217343 54217376 -148868156 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr5 54217670 54217692 -148867840 + AT_rich Low_complexity Low_complexity 1 22 0 42212 54 2 5 chr5 54217942 54224051 -148861481 + L1PA4 LINE L1 3 6096 -59 509 71 0 0 chr5 54224151 54224221 -148861311 + L1PA3 LINE L1 6081 6150 -5 266 287 155 16 chr5 54224513 54224642 -148860890 + MIR3 SINE MIR 55 201 -7 457 287 134 12 chr5 54225365 54225529 -148860003 + LTR16C LTR ERVL 70 253 -238 366 208 0 79 chr5 54225622 54225723 -148859809 + LTR16C LTR ERVL 385 477 -14 621 158 59 0 chr5 54225745 54225846 -148859686 - FLAM_A SINE Alu -16 126 20 1147 314 88 41 chr5 54225854 54226897 -148858635 - L1M4 LINE L1 -2683 3463 2372 842 211 0 0 chr5 54228288 54228435 -148857097 - AluJb SINE Alu -31 281 135 252 0 0 0 chr5 54229101 54229129 -148856403 + (A)n Simple_repeat Simple_repeat 1 28 0 183 360 45 11 chr5 54229372 54229461 -148856071 + L2 LINE L2 2666 2757 -557 1339 204 4 0 chr5 54229462 54229702 -148855830 - AluJb SINE Alu -70 242 2 567 342 54 61 chr5 54229757 54230181 -148855351 + L2 LINE L2 2852 3272 0 942 305 64 27 chr5 54230441 54230880 -148854652 - LTR16C LTR ERVL 0 491 37 28 0 0 0 chr5 54231040 54231068 -148854464 + AT_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chr5 54231328 54231355 -148854177 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 27 49 0 0 chr5 54231586 54231627 -148853905 + AT_rich Low_complexity Low_complexity 1 41 0 514 344 117 44 chr5 54231920 54232446 -148853086 + L2 LINE L2 1381 1867 -1447 2125 111 27 3 chr5 54232446 54232743 -148852789 - AluSg SINE Alu -6 304 1 514 344 117 44 chr5 54232743 54233343 -148852189 + L2 LINE L2 1867 2589 -725 437 151 14 0 chr5 54233351 54233424 -148852108 - MADE1 DNA Mariner -6 74 1 325 344 97 49 chr5 54233514 54234063 -148851469 + L2 LINE L2 2694 3272 0 22 70 0 0 chr5 54235603 54235646 -148849886 + AT_rich Low_complexity Low_complexity 1 43 0 250 292 52 26 chr5 54236199 54236217 -148849315 - L1MA10 LINE L1 -2 6332 6315 2244 216 61 36 chr5 54236217 54236852 -148848680 - L1ME2 LINE L1 -9 6155 5505 248 258 124 0 chr5 54237440 54237537 -148847995 - L1ME LINE L1 -437 5684 5576 695 229 17 6 chr5 54237804 54237983 -148847549 + L1MB7 LINE L1 6004 6184 0 287 290 38 70 chr5 54238146 54238332 -148847200 - MIR SINE MIR -4 258 79 1399 220 7 7 chr5 54238685 54238994 -148846538 + AluJo SINE Alu 1 309 0 241 233 107 19 chr5 54240026 54240129 -148845403 - L2 LINE L2 -2 3311 3200 283 203 16 53 chr5 54240276 54240463 -148845069 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 1719 154 99 15 chr5 54240556 54240888 -148844644 - MER46B DNA MER2_type 0 236 2 1650 229 11 27 chr5 54241161 54241533 -148843999 - MLT1A2 LTR MaLR -5 369 4 21 0 0 0 chr5 54241548 54241569 -148843963 + AT_rich Low_complexity Low_complexity 1 21 0 1244 220 151 20 chr5 54241577 54241927 -148843605 + MSTD LTR MaLR 1 396 0 23 54 0 0 chr5 54242355 54242392 -148843140 + AT_rich Low_complexity Low_complexity 1 37 0 550 237 178 7 chr5 54242511 54242663 -148842869 - MER5A DNA MER1_type -6 183 6 206 206 16 63 chr5 54242727 54242790 -148842742 + MIR SINE MIR 148 207 -55 224 337 71 0 chr5 54243048 54243146 -148842386 - L2 LINE L2 -657 2657 2553 260 299 94 26 chr5 54243214 54243331 -148842201 + MER5B DNA MER1_type 17 141 -37 189 241 24 60 chr5 54243687 54243770 -148841762 - MIR3 SINE MIR -127 81 2 15358 157 24 15 chr5 54244136 54249297 -148836235 + L1MA2 LINE L1 2507 7723 0 401 245 123 9 chr5 54249571 54249677 -148835855 + MER5B DNA MER1_type 20 137 -41 2724 10 0 0 chr5 54250202 54250505 -148835027 + AluYa8 SINE Alu 1 303 -7 209 203 14 81 chr5 54250676 54250750 -148834782 + MIR SINE MIR 112 180 -82 306 0 0 0 chr5 54252087 54252121 -148833411 + (TG)n Simple_repeat Simple_repeat 1 34 0 1854 161 0 0 chr5 54252121 54252400 -148833132 - AluSx SINE Alu -33 279 1 633 221 52 0 chr5 54253779 54253933 -148831599 + LTR65 LTR ERV1 5 166 -503 262 270 50 20 chr5 54254147 54254247 -148831285 + MER90 LTR ERV1 512 614 0 306 0 0 0 chr5 54254503 54254537 -148830995 + (CA)n Simple_repeat Simple_repeat 1 34 0 6313 135 91 12 chr5 54254548 54254992 -148830540 - HSMAR2 DNA Mariner -1 1301 893 2794 198 11 9 chr5 54254992 54255532 -148830000 + MER87 LTR ERV1 1 541 0 6313 135 91 12 chr5 54255532 54256167 -148829365 - HSMAR2 DNA Mariner -409 893 137 337 316 53 0 chr5 54256319 54256525 -148829007 - L1M4 LINE L1 -2098 4048 3832 * 6462 80 9 2 chr5 54256514 54257402 -148828130 - L1PB1 LINE L1 -1 6150 5257 897 99 23 0 chr5 54257408 54257539 -148827993 - HSMAR2 DNA Mariner -1129 173 40 495 161 0 0 chr5 54257724 54257811 -148827721 + L1MA8 LINE L1 6177 6263 -28 227 167 0 0 chr5 54257812 54257848 -148827684 + Alu SINE Alu 3 38 -262 725 212 22 0 chr5 54257856 54257993 -148827539 + AluJb SINE Alu 141 280 -32 441 0 0 0 chr5 54257993 54258042 -148827490 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 26 0 0 0 chr5 54258057 54258083 -148827449 + AT_rich Low_complexity Low_complexity 1 26 0 6284 93 7 2 chr5 54258475 54259790 -148825742 + L1PA10 LINE L1 4826 6150 -18 40 49 0 0 chr5 54259833 54259894 -148825638 + AT_rich Low_complexity Low_complexity 1 61 0 31 68 0 0 chr5 54259985 54260044 -148825488 + AT_rich Low_complexity Low_complexity 1 59 0 28 29 0 0 chr5 54260118 54260153 -148825379 + AT_rich Low_complexity Low_complexity 1 35 0 1037 151 63 39 chr5 54260269 54260474 -148825058 - MER2 DNA MER2_type -135 210 1 1443 236 135 16 chr5 54260590 54261034 -148824498 + MLT1D LTR MaLR 1 497 -8 895 206 70 73 chr5 54261898 54262184 -148823348 - AluJb SINE Alu -2 310 26 519 218 158 55 chr5 54263670 54263898 -148821634 + L1MC5 LINE L1 7331 7534 -427 189 0 0 0 chr5 54263898 54263919 -148821613 + (CA)n Simple_repeat Simple_repeat 2 22 0 519 218 158 55 chr5 54263919 54264075 -148821457 + L1MC5 LINE L1 7534 7755 -206 1533 167 49 29 chr5 54264852 54265158 -148820374 + AluJo SINE Alu 1 312 0 2822 160 40 94 chr5 54265251 54265982 -148819550 - LTR8 LTR ERV1 0 691 1 180 286 0 0 chr5 54266560 54266602 -148818930 - MIR3 SINE MIR -52 156 115 194 291 18 0 chr5 54267428 54267483 -148818049 + L2 LINE L2 3193 3248 -24 288 366 50 10 chr5 54267699 54267832 -148817700 - MIR SINE MIR -69 139 4 326 203 0 29 chr5 54268297 54268366 -148817166 + AluJo SINE Alu 34 100 -202 322 259 16 3 chr5 54268469 54268582 -148816950 - L1MD2 LINE L1 -45 7950 6195 789 224 58 22 chr5 54268592 54268815 -148816717 - L1MD2 LINE L1 -226 6133 5903 398 315 46 23 chr5 54269410 54269626 -148815906 + MIR SINE MIR 37 257 -5 979 193 66 0 chr5 54269934 54270115 -148815417 + AluJo SINE Alu 85 277 -35 1448 190 55 5 chr5 54270724 54271050 -148814482 + MER33 DNA MER1_type 1 324 0 21 0 0 0 chr5 54273477 54273498 -148812034 + AT_rich Low_complexity Low_complexity 1 21 0 310 224 12 35 chr5 54273503 54273588 -148811944 + L1MCa LINE L1 1992 2074 -4352 255 77 64 13 chr5 54273663 54273741 -148811791 + (TA)n Simple_repeat Simple_repeat 1 82 0 1615 201 28 45 chr5 54273787 54274184 -148811348 - MLT1B LTR MaLR 0 390 1 26 50 0 0 chr5 54274221 54274261 -148811271 + AT_rich Low_complexity Low_complexity 1 40 0 2198 110 17 0 chr5 54274885 54275184 -148810348 + AluSx SINE Alu 1 304 -8 636 295 48 31 chr5 54275472 54275699 -148809833 + MIR SINE MIR 14 244 -18 403 328 115 45 chr5 54275849 54276456 -148809076 - L2 LINE L2 -823 2491 1842 25 0 0 0 chr5 54276461 54276486 -148809046 + AT_rich Low_complexity Low_complexity 1 25 0 956 97 0 0 chr5 54276586 54276720 -148808812 - AluSg/x SINE Alu 0 310 177 6474 46 7 1 chr5 54276873 54277692 -148807840 - L1P LINE L1 -914 5232 4409 412 303 118 26 chr5 54278240 54278468 -148807064 + MIR SINE MIR 14 262 0 1828 192 29 16 chr5 54278772 54279128 -148806404 + MLT1A1 LTR MaLR 1 364 -1 231 296 110 46 chr5 54279942 54280109 -148805423 - L1ME4a LINE L1 -6 6115 5960 514 135 22 0 chr5 54280109 54280198 -148805334 + L1MA6 LINE L1 6210 6300 0 231 296 110 46 chr5 54280198 54280550 -148804982 - L1ME4a LINE L1 -161 5960 5563 22 35 0 0 chr5 54281858 54281887 -148803645 + AT_rich Low_complexity Low_complexity 1 29 0 324 378 78 17 chr5 54281953 54282133 -148803399 + MER91A DNA MER1_type 1 191 -5 514 298 43 55 chr5 54282213 54282468 -148803064 + MLT1J LTR MaLR 1 252 -259 4031 160 9 9 chr5 54283282 54284422 -148801110 + L1MA4 LINE L1 4806 5941 -359 228 135 0 0 chr5 54284489 54284526 -148801006 + (CA)n Simple_repeat Simple_repeat 2 38 0 1501 181 45 21 chr5 54285557 54285844 -148799688 - AluJo SINE Alu -13 299 6 194 311 72 18 chr5 54286013 54286180 -148799352 + L2 LINE L2 2740 2915 -399 567 241 108 6 chr5 54286599 54286757 -148798775 + MIR SINE MIR 82 255 -7 247 358 48 36 chr5 54286848 54287013 -148798519 - L3 LINE CR1 -706 871 705 243 298 107 16 chr5 54288263 54288384 -148797148 - L2 LINE L2 0 3272 3141 25 0 0 0 chr5 54288854 54288879 -148796653 + AT_rich Low_complexity Low_complexity 1 25 0 351 302 9 35 chr5 54292675 54292791 -148792741 + MIR3 SINE MIR 65 177 -31 21 0 0 0 chr5 54293683 54293704 -148791828 + AT_rich Low_complexity Low_complexity 1 21 0 809 164 0 22 chr5 54293770 54293904 -148791628 + AluJo SINE Alu 1 131 -171 375 215 125 69 chr5 54295030 54295174 -148790358 - MER5B DNA MER1_type -5 173 22 2228 125 22 25 chr5 54295305 54295666 -148789866 + THE1B LTR MaLR 5 364 0 507 202 168 8 chr5 54295747 54295866 -148789666 - MER5B DNA MER1_type -39 139 2 1026 173 12 0 chr5 54295902 54296075 -148789457 + AluJo SINE Alu 134 308 -4 399 157 0 0 chr5 54296076 54296146 -148789386 + GA-rich Low_complexity Low_complexity 4 73 0 1025 99 11 17 chr5 54296148 54296329 -148789203 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 191 163 0 23 chr5 54296331 54296374 -148789158 + GA-rich Low_complexity Low_complexity 2 43 0 422 114 14 0 chr5 54296474 54296544 -148788988 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 241 323 65 0 chr5 54297114 54297207 -148788325 - MER81 DNA DNA -15 99 1 37 23 0 0 chr5 54297910 54297954 -148787578 + AT_rich Low_complexity Low_complexity 1 44 0 706 227 95 62 chr5 54298218 54298491 -148787041 + LTR33A LTR ERVL 218 499 -24 811 302 35 31 chr5 54298504 54299044 -148786488 - L1M4 LINE L1 -2158 3988 3447 1257 296 102 56 chr5 54299061 54300211 -148785321 - L1MEd LINE L1 -4915 1204 2 484 275 55 25 chr5 54300454 54300654 -148784878 - L1ME LINE L1 -509 5612 5407 25 0 0 0 chr5 54300714 54300739 -148784793 + AT_rich Low_complexity Low_complexity 1 25 0 222 62 0 0 chr5 54301480 54301512 -148784020 + (A)n Simple_repeat Simple_repeat 1 32 0 1104 222 29 42 chr5 54302383 54302629 -148782903 + AluJo SINE Alu 1 249 -63 1972 153 51 17 chr5 54302629 54302981 -148782551 + THE1B LTR MaLR 1 364 0 11854 83 8 3 chr5 54302981 54304554 -148780978 + THE1B-int LTR MaLR 1 1580 0 1962 107 123 18 chr5 54304554 54304879 -148780653 + THE1B LTR MaLR 5 364 0 1104 222 29 42 chr5 54304879 54304936 -148780596 + AluJo SINE Alu 246 302 -10 461 333 73 8 chr5 54305098 54305332 -148780200 + MLT1L LTR MaLR 360 608 -7 26 50 0 0 chr5 54305996 54306036 -148779496 + AT_rich Low_complexity Low_complexity 1 40 0 195 321 37 73 chr5 54307035 54307144 -148778388 + L2 LINE L2 3168 3272 0 2199 96 0 4 chr5 54307630 54307911 -148777621 - AluSq SINE Alu -33 280 1 281 258 16 3 chr5 54307948 54308067 -148777465 + MER5A DNA MER1_type 9 168 -10 1304 120 0 5 chr5 54308535 54308719 -148776813 + AluSp SINE Alu 118 300 -13 572 158 0 0 chr5 54309196 54309297 -148776235 + AluJb SINE Alu 209 309 -3 2131 115 3 0 chr5 54309547 54309834 -148775698 + AluSp SINE Alu 1 288 -25 21 36 0 0 chr5 54309858 54309886 -148775646 + AT_rich Low_complexity Low_complexity 1 28 0 2063 120 3 13 chr5 54310555 54310864 -148774668 - AluSg SINE Alu -4 306 1 361 324 215 8 chr5 54311347 54311603 -148773929 + ERVL LTR ERVL 3616 3924 -1840 466 147 0 77 chr5 54311603 54311746 -148773786 + AluSq/x SINE Alu 1 132 -181 24 32 0 0 chr5 54313039 54313070 -148772462 + AT_rich Low_complexity Low_complexity 1 31 0 297 308 149 0 chr5 54313796 54313903 -148771629 + MIR3 SINE MIR 42 164 -44 2591 106 5 11 chr5 54314586 54314963 -148770569 - THE1C LTR MaLR 0 375 1 302 331 87 8 chr5 54315437 54315564 -148769968 + MIR3 SINE MIR 61 197 -11 440 286 60 76 chr5 54316112 54316427 -148769105 + MER46C DNA MER2_type 8 317 -21 2350 91 0 0 chr5 54316953 54317260 -148768272 - AluY SINE Alu -4 307 1 296 237 122 20 chr5 54317410 54317544 -148767988 + MLT1J1 LTR MaLR 245 412 -19 265 184 0 0 chr5 54317599 54317648 -148767884 - MLT1J2 LTR MaLR -379 71 23 28 29 0 0 chr5 54318134 54318169 -148767363 + AT_rich Low_complexity Low_complexity 1 35 0 189 373 0 0 chr5 54318517 54318584 -148766948 + MIR SINE MIR 49 115 -93 504 189 21 0 chr5 54318964 54319059 -148766473 - FLAM_A SINE Alu -26 116 20 2132 149 8 3 chr5 54319664 54320032 -148765500 - L1PB3 LINE L1 -2 6152 5783 377 165 0 13 chr5 54320035 54320114 -148765418 + (TA)n Simple_repeat Simple_repeat 1 78 0 374 148 0 0 chr5 54320114 54320175 -148765357 - L1PB3 LINE L1 -360 5791 5731 36 0 0 0 chr5 54321068 54321104 -148764428 + AT_rich Low_complexity Low_complexity 1 36 0 206 320 39 29 chr5 54321111 54321214 -148764318 + MIR SINE MIR 38 141 -121 852 116 31 8 chr5 54325337 54325466 -148760066 + AluSq/x SINE Alu 1 132 -181 374 249 133 23 chr5 54327175 54327348 -148758184 - L1 LINE L1 -2582 3564 3373 * 2048 181 30 37 chr5 54327346 54327923 -148757609 + L1MA9 LINE L1 5622 6290 -22 191 237 184 0 chr5 54327985 54328061 -148757471 + MIR3 SINE MIR 114 203 -5 7313 57 3 1 chr5 54328200 54329135 -148756397 + L1P LINE L1 3977 4913 -1233 632 175 25 12 chr5 54329236 54329396 -148756136 + CT-rich Low_complexity Low_complexity 3 164 0 465 204 21 18 chr5 54329424 54329691 -148755841 + CT-rich Low_complexity Low_complexity 1 267 0 2156 115 7 0 chr5 54330228 54330523 -148755009 - AluSx SINE Alu -15 297 1 850 244 15 5 chr5 54330602 54330807 -148754725 + MER63A DNA MER1_type 4 210 0 182 364 11 11 chr5 54330996 54331084 -148754448 - L2 LINE L2 -1 3312 3225 430 333 5 58 chr5 54331428 54331617 -148753915 + MLT1K LTR MaLR 141 319 -269 2379 97 0 0 chr5 54331675 54331984 -148753548 + AluSc SINE Alu 1 309 0 2338 71 0 0 chr5 54332553 54332858 -148752674 - AluY SINE Alu 0 307 3 457 254 90 53 chr5 54332860 54333049 -148752483 - MIR SINE MIR 0 262 67 1662 160 44 24 chr5 54333302 54333596 -148751936 + AluJb SINE Alu 1 300 -12 2283 133 11 6 chr5 54333987 54334348 -148751184 - MER47A DNA MER2_type 0 366 4 2034 115 0 4 chr5 54334538 54334848 -148750684 - AluSx SINE Alu 0 343 35 21 57 0 0 chr5 54334848 54334883 -148750649 + AT_rich Low_complexity Low_complexity 1 35 0 507 261 81 14 chr5 54334928 54335211 -148750321 + L1ME LINE L1 5258 5559 -605 2424 71 3 3 chr5 54335740 54336051 -148749481 - AluY SINE Alu 0 311 1 2112 105 7 7 chr5 54336427 54336722 -148748810 + AluSq SINE Alu 1 295 -18 2611 147 56 7 chr5 54336990 54337452 -148748080 + MER31A LTR ERV1 1 485 0 721 224 56 119 chr5 54337499 54337785 -148747747 + MER31A-int LTR ERV1 15 282 -4654 630 228 19 70 chr5 54337763 54337978 -148747554 + MER31A-int LTR ERV1 201 404 -4532 * 974 183 119 87 chr5 54338126 54338307 -148747225 + MER31A-int LTR ERV1 887 1061 -3875 1878 120 63 3 chr5 54338307 54338591 -148746941 - AluSx SINE Alu -11 301 1 974 183 119 87 chr5 54338591 54338813 -148746719 + MER31A-int LTR ERV1 1061 1303 -3633 656 256 23 28 chr5 54338798 54339013 -148746519 + MER31A-int LTR ERV1 1909 2122 -2749 * 9984 177 69 50 chr5 54339085 54340803 -148744729 + MER31A-int LTR ERV1 2373 4106 -830 1996 117 3 7 chr5 54340803 54341093 -148744439 + AluSg SINE Alu 10 298 -12 9984 177 69 50 chr5 54341093 54341914 -148743618 + MER31A-int LTR ERV1 4106 4910 -26 2436 151 67 2 chr5 54341920 54342337 -148743195 + MER31A LTR ERV1 1 444 -41 2717 131 7 16 chr5 54342337 54342773 -148742759 - MSTB1 LTR MaLR 0 432 1 2301 88 10 0 chr5 54342783 54343078 -148742454 - AluSx SINE Alu -14 298 1 590 341 64 55 chr5 54343431 54344245 -148741287 + HERVL LTR ERVL 4160 5019 -745 1279 117 6 0 chr5 54344385 54344564 -148740968 + AluSg/x SINE Alu 130 309 -3 1667 120 19 0 chr5 54344575 54344833 -148740699 + L1MC2 LINE L1 5717 5979 -365 858 172 31 22 chr5 54345542 54345860 -148739672 + L1MC2 LINE L1 5921 6342 -2 331 194 42 0 chr5 54345923 54345995 -148739537 + HERVL LTR ERVL 5226 5300 -464 725 269 24 124 chr5 54346448 54346988 -148738544 + LTR67 LTR ERVL 47 532 -25 2235 117 0 0 chr5 54347168 54347468 -148738064 + AluSx SINE Alu 1 300 -12 1386 151 0 13 chr5 54348074 54348299 -148737233 + AluJo SINE Alu 86 307 -5 23 0 0 0 chr5 54348950 54348973 -148736559 + AT_rich Low_complexity Low_complexity 1 23 0 2062 179 14 11 chr5 54349311 54349675 -148735857 + MLT1A1 LTR MaLR 1 365 0 24 0 0 0 chr5 54351319 54351343 -148734189 + AT_rich Low_complexity Low_complexity 1 24 0 513 311 94 56 chr5 54351744 54352076 -148733456 - L1MC4a LINE L1 -1875 5933 5568 2907 119 20 2 chr5 54352076 54352522 -148733010 - L1PA16 LINE L1 -9 6157 5704 513 311 94 56 chr5 54352522 54352774 -148732758 - L1MC4a LINE L1 -2240 5568 5327 2190 110 3 0 chr5 54352866 54353158 -148732374 + AluSc SINE Alu 1 293 -16 23 0 0 0 chr5 54353930 54353953 -148731579 + AT_rich Low_complexity Low_complexity 1 23 0 224 346 59 15 chr5 54354125 54354261 -148731271 - MIR SINE MIR -109 153 12 230 258 0 0 chr5 54354973 54355035 -148730497 + A-rich Low_complexity Low_complexity 1 62 0 26 50 0 0 chr5 54355283 54355323 -148730209 + AT_rich Low_complexity Low_complexity 1 40 0 408 342 98 56 chr5 54355485 54355842 -148729690 + L2 LINE L2 2895 3266 -6 21 0 0 0 chr5 54356484 54356505 -148729027 + AT_rich Low_complexity Low_complexity 1 21 0 1751 132 3 30 chr5 54358784 54359079 -148726453 - AluSx SINE Alu -25 287 1 307 304 74 0 chr5 54359476 54359624 -148725908 + MER103 DNA DNA 8 166 0 245 212 0 15 chr5 54361968 54362034 -148723498 + (TA)n Simple_repeat Simple_repeat 1 65 0 772 211 0 124 chr5 54362069 54362287 -148723245 - MER77 LTR ERV1 -414 191 1 409 98 0 0 chr5 54362533 54362594 -148722938 + MER41B LTR ERV1 487 547 -88 26 0 0 0 chr5 54363740 54363766 -148721766 + AT_rich Low_complexity Low_complexity 1 26 0 688 301 24 70 chr5 54364490 54364819 -148720713 - MLT1I LTR MaLR -14 395 82 260 415 62 0 chr5 54365803 54365979 -148719553 + L2 LINE L2 1065 1251 -2063 703 325 71 80 chr5 54366547 54367476 -148718056 + L2 LINE L2 1936 2856 -458 34 0 0 0 chr5 54367480 54367514 -148718018 + AT_rich Low_complexity Low_complexity 1 34 0 230 218 36 0 chr5 54367739 54367794 -148717738 + L2 LINE L2 3216 3272 0 31 58 0 0 chr5 54368802 54368854 -148716678 + AT_rich Low_complexity Low_complexity 1 52 0 234 213 18 61 chr5 54368889 54369053 -148716479 + (TTAA)n Simple_repeat Simple_repeat 2 158 0 237 246 58 0 chr5 54369057 54369126 -148716406 - L1ME4a LINE L1 -102 6019 5947 249 256 273 42 chr5 54369259 54369567 -148715965 - L1ME4a LINE L1 -336 5785 5407 1783 156 83 56 chr5 54369840 54370377 -148715155 - MLT2A2 LTR ERVL 0 554 1 2047 103 41 0 chr5 54372184 54372475 -148713057 + AluSc SINE Alu 2 304 -5 1567 184 0 0 chr5 54372719 54372974 -148712558 - AluJo SINE Alu -26 286 32 184 319 62 26 chr5 54374310 54374423 -148711109 + L2 LINE L2 3153 3269 -3 298 231 205 58 chr5 54374870 54375026 -148710506 - MER5A DNA MER1_type -7 182 4 207 307 58 44 chr5 54378167 54378304 -148707228 - L2 LINE L2 -49 3264 3126 1819 168 3 0 chr5 54378305 54378602 -148706930 + AluJb SINE Alu 1 298 -14 187 313 24 48 chr5 54381071 54381154 -148704378 - L2 LINE L2 -13 3300 3220 180 264 56 28 chr5 54381293 54381365 -148704167 - L2 LINE L2 -214 3058 2985 276 257 14 0 chr5 54382051 54382125 -148703407 - LTR37A LTR ERV1 -241 185 111 1208 279 39 64 chr5 54382379 54383095 -148702437 - MER31-int LTR ERV1 -835 4101 3404 254 332 78 66 chr5 54383987 54384043 -148701489 - MLT1K LTR MaLR -6 582 528 1342 114 59 27 chr5 54384043 54384262 -148701270 + MER30 DNA MER1_type 5 230 0 254 332 78 66 chr5 54384262 54384449 -148701083 - MLT1K LTR MaLR -60 528 336 258 32 0 0 chr5 54385123 54385154 -148700378 + (TA)n Simple_repeat Simple_repeat 1 31 0 2276 73 0 51 chr5 54385154 54385469 -148700063 - AluSg1 SINE Alu -10 299 1 292 164 0 36 chr5 54385435 54385490 -148700042 - AluSp SINE Alu -134 169 117 730 307 79 59 chr5 54385492 54385896 -148699636 - L2 LINE L2 -3 3269 2858 1483 197 53 11 chr5 54385968 54386252 -148699280 + AluJb SINE Alu 6 301 -11 27 0 0 0 chr5 54386642 54386669 -148698863 + AT_rich Low_complexity Low_complexity 1 27 0 2089 128 6 3 chr5 54387218 54387530 -148698002 - AluSq SINE Alu 0 313 1 269 330 108 52 chr5 54387776 54388588 -148696944 - L2 LINE L2 -1707 1607 750 351 207 216 9 chr5 54389067 54389166 -148696366 + AluJb SINE Alu 3 129 -173 225 0 0 0 chr5 54389166 54389191 -148696341 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 351 207 216 9 chr5 54389191 54389202 -148696330 + AluJb SINE Alu 129 136 -166 420 207 16 90 chr5 54390703 54390891 -148694641 + AluSg/x SINE Alu 117 290 -19 278 298 99 7 chr5 54390989 54391352 -148694180 - L1MC/D LINE L1 -603 5518 5365 395 87 14 0 chr5 54392698 54392767 -148692765 + (GA)n Simple_repeat Simple_repeat 1 70 0 338 246 47 143 chr5 54393104 54393405 -148692127 - HAL1 LINE L1 -403 2104 1833 1586 248 78 64 chr5 54393407 54393870 -148691662 - HAL1 LINE L1 -725 1782 1327 1889 144 6 28 chr5 54393870 54394189 -148691343 - AluJo SINE Alu 0 312 1 1586 248 78 64 chr5 54394189 54394680 -148690852 - HAL1 LINE L1 -1180 1327 814 309 26 0 0 chr5 54394947 54394985 -148690547 + (TG)n Simple_repeat Simple_repeat 2 39 0 234 91 0 0 chr5 54395020 54395064 -148690468 + LTR66 LTR ERVL 396 439 -171 249 185 0 0 chr5 54395084 54395138 -148690394 - L1MC4 LINE L1 -1339 6703 6650 21 57 0 0 chr5 54395593 54395628 -148689904 + AT_rich Low_complexity Low_complexity 1 35 0 234 268 116 65 chr5 54396330 54396468 -148689064 + MLT1L LTR MaLR 19 163 -452 297 210 29 172 chr5 54396605 54396919 -148688613 + MLT1L LTR MaLR 347 615 0 461 293 50 36 chr5 54398126 54398337 -148687195 + MIR SINE MIR 38 255 -7 1756 187 0 0 chr5 54398337 54398643 -148686889 - AluJb SINE Alu 0 306 1 2028 184 41 41 chr5 54398697 54399158 -148686374 + MLT1D LTR MaLR 1 461 -44 246 128 0 0 chr5 54399163 54399202 -148686330 + (T)n Simple_repeat Simple_repeat 1 39 0 1070 57 7 0 chr5 54399508 54399649 -148685883 - L1PA8 LINE L1 0 6172 6031 323 337 17 58 chr5 54399992 54400164 -148685368 - HAL1 LINE L1 -2298 209 45 1528 179 189 5 chr5 54401388 54401807 -148683725 - LTR54B LTR ERV1 -2 496 1 273 261 0 98 chr5 54402020 54402112 -148683420 - L2 LINE L2 -4 3309 3227 949 298 131 84 chr5 54402133 54403232 -148682300 - L2 LINE L2 -515 2799 1649 22 70 0 0 chr5 54403690 54403733 -148681799 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr5 54405412 54405442 -148680090 + AT_rich Low_complexity Low_complexity 1 30 0 254 320 34 53 chr5 54406065 54406271 -148679261 - MER31-int LTR ERV1 -892 4044 3843 27 0 0 0 chr5 54406344 54406371 -148679161 + AT_rich Low_complexity Low_complexity 1 27 0 1991 140 7 0 chr5 54406377 54406670 -148678862 + AluSq SINE Alu 1 295 -18 1944 146 7 0 chr5 54407425 54407720 -148677812 + AluSx SINE Alu 1 297 -15 42561 52 2 3 chr5 54407988 54414145 -148671387 - L1PA4 LINE L1 -1 6154 8 2270 111 0 0 chr5 54416116 54416414 -148669118 + AluSq SINE Alu 1 298 -15 22 56 0 0 chr5 54417064 54417100 -148668432 + AT_rich Low_complexity Low_complexity 1 36 0 486 250 131 12 chr5 54418167 54418335 -148667197 - MER5A DNA MER1_type 0 189 2 7053 92 10 199 chr5 54419315 54421013 -148664519 + SVA Other Other 10 1386 0 1537 187 54 3 chr5 54422350 54422665 -148662867 - MER46B DNA MER2_type -8 228 23 2173 144 25 13 chr5 54422667 54423064 -148662468 + Tigger2 DNA MER2_type 2 403 -2315 792 171 15 93 chr5 54423071 54423276 -148662256 - L1PB4 LINE L1 -3 6153 5965 13579 134 47 18 chr5 54423281 54425546 -148659986 + Tigger2 DNA MER2_type 386 2716 -2 235 257 200 7 chr5 54425654 54425794 -148659738 - L1PB4 LINE L1 -743 5557 5391 782 159 119 13 chr5 54425868 54426019 -148659513 + FAM SINE Alu 1 167 -8 1653 66 0 0 chr5 54426096 54426309 -148659223 - L1PA5 LINE L1 -7 6147 5935 1283 45 0 13 chr5 54426409 54426566 -148658966 - AluY SINE Alu -47 264 110 904 266 145 58 chr5 54426566 54427627 -148657905 - L1MEc LINE L1 -4075 2321 1169 573 246 101 42 chr5 54427636 54427924 -148657608 - L1MEc LINE L1 -5285 920 616 336 298 56 43 chr5 54427945 54428106 -148657426 - L2 LINE L2 -22 3291 3129 26 0 0 0 chr5 54428147 54428173 -148657359 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr5 54430718 54430746 -148654786 + AT_rich Low_complexity Low_complexity 1 28 0 347 261 116 43 chr5 54432133 54432271 -148653261 + MIR SINE MIR 6 153 -109 21 57 0 0 chr5 54432343 54432378 -148653154 + AT_rich Low_complexity Low_complexity 1 35 0 229 115 0 0 chr5 54432706 54432758 -148652774 - LTR66 LTR ERVL -165 445 394 207 0 0 0 chr5 54432758 54432781 -148652751 + (CA)n Simple_repeat Simple_repeat 2 24 0 7501 28 10 0 chr5 54432791 54434306 -148651226 - L1PA5 LINE L1 -9 6145 4624 673 131 9 9 chr5 54434307 54434414 -148651118 + FLAM_C SINE Alu 27 133 -10 700 158 36 7 chr5 54434416 54434555 -148650977 + L1MC3 LINE L1 7617 7759 -26 646 271 113 17 chr5 54637223 54637514 -148448018 - L2 LINE L2 -542 2772 2454 574 185 75 48 chr5 54637619 54637710 -148447822 + MLT1B LTR MaLR 1 99 -291 2118 126 83 6 chr5 54637710 54638058 -148447474 - THE1C LTR MaLR 0 375 1 574 185 75 48 chr5 54638058 54638112 -148447420 + MLT1B LTR MaLR 99 150 -240 262 141 141 65 chr5 54638190 54638282 -148447250 + MLT1B LTR MaLR 274 372 -2 575 27 14 0 chr5 54639086 54639159 -148446373 + (CA)n Simple_repeat Simple_repeat 2 75 0 195 204 0 0 chr5 54643527 54643571 -148441961 + (TG)n Simple_repeat Simple_repeat 1 44 0 357 43 0 0 chr5 54643643 54643690 -148441842 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 872 19 9 0 chr5 54644583 54644689 -148440843 + (TTTCC)n Simple_repeat Simple_repeat 5 111 0 464 250 12 70 chr5 54644896 54645068 -148440464 - MLT1F LTR MaLR 0 542 381 277 242 30 30 chr5 54645079 54645145 -148440387 + tRNA-Ala-GCG tRNA tRNA 3 68 -7 234 252 2 2 chr5 54646070 54646146 -148439386 - L1 LINE L1 -1626 4520 4445 225 211 26 26 chr5 54648569 54648645 -148436887 + A-rich Low_complexity Low_complexity 3 78 0 2154 233 16 2 chr5 54650020 54650578 -148434954 + L1 LINE L1 3885 4450 -1696 328 264 38 75 chr5 54652253 54652359 -148433173 + MLT1E1 LTR MaLR 3 104 -550 316 243 56 37 chr5 54652783 54652890 -148432642 + MLT1E1 LTR MaLR 382 490 -164 199 222 14 14 chr5 54653090 54653162 -148432370 + CT-rich Low_complexity Low_complexity 4 75 0 869 290 104 21 chr5 54653616 54654059 -148431473 - MLT1E LTR MaLR -72 521 39 188 255 0 0 chr5 54656283 54656334 -148429198 - MIR SINE MIR -102 106 56 189 121 0 0 chr5 54659509 54659542 -148425990 + (A)n Simple_repeat Simple_repeat 1 33 0 231 285 104 35 chr5 54659698 54659842 -148425690 - MER3 DNA MER1_type -55 154 1 407 266 111 29 chr5 54661040 54661247 -148424285 - MIR SINE MIR -2 260 37 263 320 47 0 chr5 54661301 54661429 -148424103 - MIR SINE MIR -70 192 59 398 125 167 10 chr5 54661876 54661972 -148423560 + L1 LINE L1 3584 3694 -2452 24 32 0 0 chr5 54664951 54664982 -148420550 + AT_rich Low_complexity Low_complexity 1 31 0 1940 101 74 20 chr5 54668473 54668769 -148416763 - AluSx SINE Alu 0 312 1 2423 88 0 0 chr5 54668871 54669178 -148416354 + AluY SINE Alu 1 307 -4 455 283 60 76 chr5 54669704 54670019 -148415513 - MER46C DNA MER2_type -21 317 8 277 346 85 8 chr5 54670567 54670697 -148414835 - MIR3 SINE MIR -11 197 58 2637 106 5 11 chr5 54671168 54671545 -148413987 + THE1C LTR MaLR 1 375 0 19867 56 2 2 chr5 54672244 54674764 -148410768 - L1P LINE L1 -2285 3861 1340 1445 184 58 19 chr5 54674771 54675081 -148410451 - L1P LINE L1 -5740 406 85 8470 49 3 1 chr5 54675183 54677016 -148408516 + L1PA5 LINE L1 4321 6154 0 7698 35 0 0 chr5 54677432 54678783 -148406749 + L1PA3 LINE L1 4862 6212 0 1900 110 51 20 chr5 54678863 54679155 -148406377 + AluSc SINE Alu 3 303 -6 24 0 0 0 chr5 54679571 54679595 -148405937 + AT_rich Low_complexity Low_complexity 1 24 0 4042 35 8 12 chr5 54679615 54680108 -148405424 - L1PA4 LINE L1 -3 6152 5662 1205 345 76 18 chr5 54680114 54681243 -148404289 - L2 LINE L2 -1156 2158 964 204 275 55 46 chr5 54681308 54681417 -148404115 + MIR3 SINE MIR 86 195 -13 250 78 0 78 chr5 54681528 54681579 -148403953 + Alu SINE Alu 254 300 0 255 324 29 41 chr5 54681649 54681828 -148403704 + MIR SINE MIR 16 192 -63 248 232 18 0 chr5 54682881 54682937 -148402595 + (TCCA)n Simple_repeat Simple_repeat 2 58 0 760 223 69 6 chr5 54683230 54683405 -148402127 - MER5A DNA MER1_type -3 186 1 217 346 40 0 chr5 54683499 54683600 -148401932 - MIR3 SINE MIR -41 167 63 3174 163 30 0 chr5 54683968 54684507 -148401025 + Tigger1 DNA MER2_type 1 555 -1863 14969 37 7 4 chr5 54684607 54687450 -148398082 - L1PA4 LINE L1 -305 5850 2999 674 185 25 49 chr5 54688041 54688203 -148397329 - L1PB4 LINE L1 -1 6155 5998 2813 268 67 51 chr5 54688353 54690079 -148395453 - L1PA15-16 LINE L1 -4469 2380 743 317 271 75 0 chr5 54690775 54690882 -148394650 - MIR SINE MIR 0 262 148 442 227 116 12 chr5 54690900 54691072 -148394460 - L1MB3 LINE L1 -7 6176 5987 199 277 31 31 chr5 54691081 54691146 -148394386 - MIR SINE MIR -67 141 77 419 38 0 0 chr5 54693477 54693530 -148392002 + MADE1 DNA Mariner 1 53 -27 1651 184 67 12 chr5 54693795 54694197 -148391335 - L1 LINE L1 -1312 4834 4411 2503 56 15 0 chr5 54694297 54694636 -148390896 + L1PA4 LINE L1 5812 6155 0 26 0 0 0 chr5 54695408 54695434 -148390098 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr5 54695471 54695492 -148390040 + AT_rich Low_complexity Low_complexity 1 21 0 702 192 187 5 chr5 54697335 54697533 -148387999 - MER31B LTR ERV1 -8 458 225 543 232 48 77 chr5 54697569 54697776 -148387756 - L1ME2 LINE L1 -3 6161 5961 4754 147 13 12 chr5 54697777 54698792 -148386740 - L1MA8 LINE L1 -229 6062 5045 1127 127 6 0 chr5 54698792 54698957 -148386575 - MER4A LTR ERV1 0 664 499 187 313 62 0 chr5 54699630 54699710 -148385822 + MIR SINE MIR 151 235 -27 2310 84 0 31 chr5 54699905 54700225 -148385307 - AluY SINE Alu -1 310 1 239 299 81 0 chr5 54701190 54701277 -148384255 + L2 LINE L2 2943 3036 -277 314 198 77 44 chr5 54701315 54701406 -148384126 + L2 LINE L2 3155 3248 -65 399 328 75 0 chr5 54702270 54702456 -148383076 - MIR SINE MIR -2 260 61 2916 224 34 31 chr5 54702456 54702885 -148382647 + L1MA7 LINE L1 3826 4259 -1887 210 37 0 0 chr5 54702885 54702912 -148382620 + (CATG)n Simple_repeat Simple_repeat 3 29 0 2916 224 34 31 chr5 54702912 54703311 -148382221 + L1MA7 LINE L1 4259 4656 -1490 295 183 28 28 chr5 54703315 54703386 -148382146 + L1PA15-16 LINE L1 276 346 -6503 4701 152 26 23 chr5 54703395 54704252 -148381280 - L1PA16 LINE L1 0 6166 5308 992 236 25 63 chr5 54704234 54704518 -148381014 + L1PA15-16 LINE L1 415 687 -6162 * 2376 161 60 60 chr5 54704879 54705495 -148380037 - L1MA7 LINE L1 -1312 4834 4219 4380 170 59 30 chr5 54705501 54706722 -148378810 + L1MA7 LINE L1 4848 6117 -174 2354 53 0 27 chr5 54706722 54707022 -148378510 + AluY SINE Alu 1 292 -19 4380 170 59 30 chr5 54707022 54707201 -148378331 + L1MA7 LINE L1 6117 6289 -2 380 292 44 0 chr5 54707231 54707344 -148378188 - MIR SINE MIR -108 154 37 233 294 185 0 chr5 54707560 54707652 -148377880 + MIR SINE MIR 36 144 -64 1776 174 37 42 chr5 54708496 54708926 -148376606 - MSTA LTR MaLR 0 428 1 35 0 0 0 chr5 54709103 54709138 -148376394 + AT_rich Low_complexity Low_complexity 1 35 0 1014 148 92 0 chr5 54709244 54709440 -148376092 - L1PA13 LINE L1 -2 6161 5948 5806 158 43 29 chr5 54709440 54711336 -148374196 - L1PA13 LINE L1 -25 6138 4219 1988 143 3 0 chr5 54711336 54711622 -148373910 + AluSx SINE Alu 3 289 -23 5806 158 43 29 chr5 54711622 54711696 -148373836 - L1PA13 LINE L1 -1944 4219 4148 3385 164 13 11 chr5 54711720 54712800 -148372732 - L1PA13 LINE L1 -411 5754 4675 1183 197 37 21 chr5 54712904 54713229 -148372303 - L1 LINE L1 -772 5374 5045 1272 113 11 0 chr5 54713229 54713414 -148372118 - MER4B LTR ERV1 0 610 424 263 95 0 0 chr5 54713418 54713460 -148372072 - MADE1 DNA Mariner -4 76 35 273 111 22 0 chr5 54713547 54713592 -148371940 - MADE1 DNA Mariner -34 46 1 2200 120 99 18 chr5 54713592 54713985 -148371547 - MER4B LTR ERV1 -185 425 1 1863 165 36 43 chr5 54713986 54714379 -148371153 - L1 LINE L1 -1099 5047 4658 549 288 62 10 chr5 54714418 54714643 -148370889 - MLT1H LTR MaLR -3 546 278 4101 124 8 11 chr5 54714651 54714855 -148370677 - MER41B LTR ERV1 -8 627 424 2198 133 30 25 chr5 54714855 54715217 -148370315 - THE1B LTR MaLR 0 364 1 4101 124 8 11 chr5 54715217 54715641 -148369891 - MER41B LTR ERV1 -211 424 1 543 313 108 8 chr5 54715641 54715886 -148369646 - MLT1H LTR MaLR -267 282 11 338 222 0 50 chr5 54715887 54715986 -148369546 - L1ME2 LINE L1 -234 5930 5837 1461 222 47 52 chr5 54715988 54716124 -148369408 - MLT1C LTR MaLR -43 424 289 4241 139 34 21 chr5 54716124 54716880 -148368652 + MER4E LTR ERV1 1 766 0 1461 222 47 52 chr5 54716880 54717167 -148368365 - MLT1C LTR MaLR -178 289 3 1267 221 47 36 chr5 54717171 54717396 -148368136 - L1ME2 LINE L1 -441 5723 5491 2079 109 10 7 chr5 54717396 54717700 -148367832 + AluSq SINE Alu 1 305 -8 1267 221 47 36 chr5 54717700 54717858 -148367674 - L1ME2 LINE L1 -673 5491 5336 2019 187 38 115 chr5 54717955 54718485 -148367047 - MLT1D LTR MaLR -16 489 1 789 233 147 20 chr5 54718487 54718732 -148366800 + LTR50 LTR ERVL 3 278 -517 360 239 188 24 chr5 54718853 54719066 -148366466 + LTR50 LTR ERVL 528 775 -20 315 0 0 0 chr5 54719510 54719545 -148365987 + (CA)n Simple_repeat Simple_repeat 1 35 0 35 54 0 0 chr5 54721381 54721437 -148364095 + AT_rich Low_complexity Low_complexity 1 56 0 1875 152 17 0 chr5 54722598 54722887 -148362645 - AluSx SINE Alu -16 296 3 901 87 0 0 chr5 54724329 54724444 -148361088 + AluSq/x SINE Alu 1 115 -198 502 231 88 28 chr5 54724671 54724853 -148360679 + L1MC5 LINE L1 7721 7913 -48 22 56 5 0 chr5 54725084 54725168 -148360364 + AT_rich Low_complexity Low_complexity 1 50 0 2192 229 43 24 chr5 54726221 54726775 -148358757 + MER90 LTR ERV1 1 565 -10 2855 157 14 0 chr5 54726867 54727359 -148358173 - L1MB3 LINE L1 0 6183 5685 220 221 211 29 chr5 54727810 54727914 -148357618 + L2 LINE L2 3191 3313 0 208 279 82 74 chr5 54727931 54728053 -148357479 - L2 LINE L2 -25 3288 3166 24 32 0 0 chr5 54728653 54728684 -148356848 + AT_rich Low_complexity Low_complexity 1 31 0 2121 70 0 4 chr5 54729283 54729542 -148355990 + AluY SINE Alu 1 258 -53 286 338 26 52 chr5 54729624 54729698 -148355834 - MIR3 SINE MIR -5 203 129 2690 173 2 11 chr5 54729698 54730166 -148355366 + MLT2C2 LTR ERVL 1 464 0 286 338 26 52 chr5 54730166 54730245 -148355287 - MIR3 SINE MIR -79 129 54 272 276 89 47 chr5 54730694 54730853 -148354679 - MIR SINE MIR -59 203 35 659 306 59 24 chr5 54733448 54733736 -148351796 + LTR16A1 LTR ERVL 160 457 0 246 316 143 0 chr5 54734556 54734654 -148350878 - L2 LINE L2 -15 3298 3187 257 336 25 34 chr5 54735092 54735211 -148350321 - MER5A DNA MER1_type -25 164 47 1057 173 15 5 chr5 54735226 54735428 -148350104 + MER3 DNA MER1_type 1 204 -5 196 265 44 15 chr5 54735674 54735742 -148349790 + L2 LINE L2 3202 3271 -1 414 222 63 167 chr5 54735983 54736054 -148349478 + MIR SINE MIR 40 117 -145 2082 131 3 13 chr5 54736054 54736367 -148349165 - AluSq SINE Alu -3 310 1 414 222 63 167 chr5 54736367 54736384 -148349148 + MIR SINE MIR 117 134 -128 2400 96 0 0 chr5 54736384 54736687 -148348845 - AluSx SINE Alu -9 303 1 414 222 63 167 chr5 54736687 54736818 -148348714 + MIR SINE MIR 134 237 -25 252 195 0 65 chr5 54737611 54737688 -148347844 + LTR67 LTR ERVL 458 529 -28 789 251 45 45 chr5 54737946 54738007 -148347525 - MER58A DNA MER1_type -2197 223 163 1772 176 31 8 chr5 54738007 54738360 -148347172 + MLT1A1 LTR MaLR 5 365 0 789 251 45 45 chr5 54738360 54738521 -148347011 - MER58A DNA MER1_type -2256 164 1 245 305 0 0 chr5 54738522 54738581 -148346951 + L2 LINE L2 3255 3313 0 495 298 89 21 chr5 54738803 54738829 -148346703 - MIR SINE MIR -6 256 233 356 302 36 52 chr5 54738829 54739021 -148346511 + MER5A DNA MER1_type 1 189 0 495 298 89 21 chr5 54739021 54739229 -148346303 - MIR SINE MIR -29 233 6 209 366 61 0 chr5 54741500 54741582 -148343950 + L2 LINE L2 3199 3285 -28 1438 213 0 20 chr5 54741704 54742004 -148343528 + MLT1A1 LTR MaLR 72 365 0 1350 248 60 42 chr5 54743595 54744047 -148341485 + MLT1C LTR MaLR 5 464 -3 189 0 0 0 chr5 54745127 54745148 -148340384 + (CATCT)n Simple_repeat Simple_repeat 3 23 0 338 105 0 18 chr5 54745482 54745539 -148339993 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 1843 166 0 0 chr5 54745544 54745822 -148339710 - AluSx SINE Alu -34 278 1 1217 141 40 83 chr5 54748034 54748311 -148337221 + MLT2C2 LTR ERVL 1 265 -199 22205 62 3 5 chr5 54748367 54751231 -148334301 + L1P LINE L1 1 2859 -3287 8884 148 27 15 chr5 54751435 54752360 -148333172 + Tigger1 DNA MER2_type 865 1817 -601 2334 78 0 10 chr5 54752360 54752654 -148332878 - AluY SINE Alu -20 291 1 8884 148 27 15 chr5 54752654 54753264 -148332268 + Tigger1 DNA MER2_type 1817 2418 0 366 222 0 0 chr5 54753504 54753576 -148331956 + L2 LINE L2 3201 3272 0 22 0 0 0 chr5 54753836 54753858 -148331674 + AT_rich Low_complexity Low_complexity 1 22 0 2297 171 6 49 chr5 54753864 54754332 -148331200 - L1MB2 LINE L1 -36 6135 5688 1805 123 31 27 chr5 54754333 54754626 -148330906 + MER7A DNA MER2_type 55 346 0 3763 194 31 12 chr5 54754629 54755887 -148329645 - L1MB2 LINE L1 -491 5680 4389 23 0 0 0 chr5 54756186 54756209 -148329323 + AT_rich Low_complexity Low_complexity 1 23 0 425 262 63 16 chr5 54758272 54758398 -148327134 - L2 LINE L2 0 3313 3182 290 294 98 101 chr5 54759371 54759588 -148325944 + MIR SINE MIR 4 212 -50 359 336 34 17 chr5 54759894 54760013 -148325519 + L2 LINE L2 3150 3270 -2 257 152 22 0 chr5 54760216 54760262 -148325270 - MER63 DNA MER1_type -36 1024 978 476 209 22 0 chr5 54760266 54760357 -148325175 - MER63 DNA MER1_type -311 751 33 435 308 146 39 chr5 54761480 54761844 -148323688 - L1MB2 LINE L1 -2868 3278 2876 750 230 16 95 chr5 54761904 54762156 -148323376 - MIR SINE MIR 0 262 31 623 205 8 8 chr5 54762540 54762662 -148322870 + MER5B DNA MER1_type 1 122 -56 26 0 0 0 chr5 54762751 54762777 -148322755 + AT_rich Low_complexity Low_complexity 1 26 0 1316 146 67 4 chr5 54762898 54763138 -148322394 + MER2 DNA MER2_type 91 345 0 1723 318 98 60 chr5 54763328 54765074 -148320458 - L2 LINE L2 -251 3021 1217 676 268 87 79 chr5 54765102 54765719 -148319813 - L2 LINE L2 0 3313 2717 253 302 212 50 chr5 54765731 54766109 -148319423 - L2 LINE L2 -2118 1196 758 22 56 0 0 chr5 54766134 54766170 -148319362 + AT_rich Low_complexity Low_complexity 1 36 0 190 364 33 66 chr5 54766507 54766658 -148318874 + MER5A DNA MER1_type 44 189 0 603 326 94 40 chr5 54766671 54767202 -148318330 + MLT1K LTR MaLR 3 562 -26 349 278 8 53 chr5 54770142 54770275 -148315257 - MIR SINE MIR -41 221 95 412 269 119 25 chr5 54772563 54772723 -148312809 + MER5A DNA MER1_type 9 183 -6 249 83 0 0 chr5 54773488 54773524 -148312008 + (CA)n Simple_repeat Simple_repeat 1 36 0 318 87 0 0 chr5 54774720 54774766 -148310766 + (CA)n Simple_repeat Simple_repeat 1 46 0 976 344 33 9 chr5 54775822 54776243 -148309289 + L2 LINE L2 971 1401 -1913 197 108 27 0 chr5 54776323 54776360 -148309172 + (CA)n Simple_repeat Simple_repeat 1 38 0 1237 301 96 18 chr5 54776380 54777008 -148308524 + L2 LINE L2 1354 2030 -1284 2374 138 16 23 chr5 54777014 54777450 -148308082 - L1MB1 LINE L1 0 6168 5736 542 179 9 0 chr5 54777719 54777825 -148307707 + FRAM SINE Alu 70 176 0 717 253 261 9 chr5 54778053 54778584 -148306948 + LTR50 LTR ERVL 3 785 -10 1555 221 66 18 chr5 54778808 54779247 -148306285 + MLT1C LTR MaLR 8 467 0 471 304 61 17 chr5 54780438 54780619 -148304913 + MIR SINE MIR 49 237 -25 1151 274 25 38 chr5 54781586 54781984 -148303548 - L2 LINE L2 -831 2483 2091 492 378 101 16 chr5 54782013 54782526 -148303006 - L3 LINE CR1 -353 1224 668 29 0 0 0 chr5 54782548 54782577 -148302955 + AT_rich Low_complexity Low_complexity 1 29 0 1923 141 10 10 chr5 54782577 54782876 -148302656 - AluSx SINE Alu -13 299 1 34 24 0 0 chr5 54783013 54783054 -148302478 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr5 54783306 54783335 -148302197 + AT_rich Low_complexity Low_complexity 1 29 0 3456 27 0 2 chr5 54783792 54784202 -148301330 - L1PA4 LINE L1 -3 6152 5744 397 380 46 37 chr5 54784470 54784901 -148300631 + L1MEd LINE L1 356 790 -5415 594 247 91 62 chr5 54784902 54785387 -148300145 + L1MEd LINE L1 842 1340 -4865 2099 169 9 23 chr5 54785552 54786033 -148299499 + L1P3 LINE L1 6 788 -5673 227 132 0 26 chr5 54786227 54786265 -148299267 - MLT2D LTR ERVL 0 554 518 369 0 0 0 chr5 54786265 54786306 -148299226 + (TG)n Simple_repeat Simple_repeat 2 42 0 2258 213 65 19 chr5 54786306 54786343 -148299189 - MLT2B3 LTR ERVL -3 551 517 474 14 57 0 chr5 54786343 54786413 -148299119 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 2258 213 65 19 chr5 54786413 54786693 -148298839 - MLT2B3 LTR ERVL -37 517 197 1781 165 7 0 chr5 54786693 54787027 -148298505 - AluSx SINE Alu 0 336 1 2258 213 65 19 chr5 54787027 54787233 -148298299 - MLT2B3 LTR ERVL -357 197 2 318 105 66 0 chr5 54787232 54787308 -148298224 + (TCTA)n Simple_repeat Simple_repeat 3 83 0 1208 192 52 119 chr5 54787308 54787735 -148297797 - MLT2D LTR ERVL -15 399 2 229 272 41 46 chr5 54788187 54788382 -148297150 + L1MEd LINE L1 2103 2296 -4100 340 221 11 11 chr5 54788465 54788560 -148296972 + HAL1 LINE L1 2258 2352 -155 5883 7 0 7 chr5 54788571 54789246 -148296286 + L1HS LINE L1 5486 6155 0 726 233 93 5 chr5 54790099 54790292 -148295240 - MER63A DNA MER1_type 0 210 1 597 271 61 32 chr5 54790402 54790940 -148294592 + L1MCc LINE L1 1121 1847 -4891 1583 221 47 0 chr5 54790999 54791321 -148294211 + MER2 DNA MER2_type 9 345 0 212 173 39 0 chr5 54791322 54791374 -148294158 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2459 53 20 0 chr5 54791420 54791719 -148293813 + AluY SINE Alu 1 305 -6 201 147 0 0 chr5 54791722 54791756 -148293776 + (TA)n Simple_repeat Simple_repeat 1 34 0 306 218 35 113 chr5 54791799 54791941 -148293591 + L1MCc LINE L1 2105 2235 -4887 748 248 124 11 chr5 54792046 54792417 -148293115 + L1MCc LINE L1 2564 2976 -4146 2662 13 10 0 chr5 54793128 54793436 -148292096 + AluYb8 SINE Alu 1 311 -7 464 340 63 15 chr5 54794277 54794600 -148290932 + HERVL LTR ERVL 1776 2120 -3033 309 68 0 0 chr5 54794809 54794853 -148290679 + (TA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr5 54794859 54794879 -148290653 + (CA)n Simple_repeat Simple_repeat 2 21 0 1888 193 135 9 chr5 54794897 54795349 -148290183 + LTR22 LTR ERVK 1 509 0 1228 235 58 36 chr5 54795349 54795761 -148289771 - L1MA9 LINE L1 -96 6216 5796 5237 135 16 16 chr5 54796118 54797021 -148288511 + L1PA10 LINE L1 5262 6164 -4 464 262 90 0 chr5 54797750 54797895 -148287637 - MIR SINE MIR -34 228 71 207 155 56 14 chr5 54799882 54799953 -148285579 + (TA)n Simple_repeat Simple_repeat 2 75 0 24 32 0 0 chr5 54800104 54800135 -148285397 + AT_rich Low_complexity Low_complexity 1 31 0 540 56 0 0 chr5 54800135 54800206 -148285326 - L1PA6 LINE L1 -6 6148 6078 35 0 0 0 chr5 54800748 54800783 -148284749 + AT_rich Low_complexity Low_complexity 1 35 0 502 296 82 61 chr5 54800912 54801429 -148284103 + L1MEc LINE L1 862 1407 -4989 198 71 0 0 chr5 54801429 54801457 -148284075 + (CA)n Simple_repeat Simple_repeat 1 28 0 502 296 82 61 chr5 54801457 54801828 -148283704 + L1MEc LINE L1 1407 1769 -4627 1231 283 49 47 chr5 54801851 54802940 -148282592 + L1MEc LINE L1 1849 2894 -3321 309 109 0 0 chr5 54803372 54803418 -148282114 + (TG)n Simple_repeat Simple_repeat 1 46 0 411 222 28 23 chr5 54803945 54804121 -148281411 + (TA)n Simple_repeat Simple_repeat 2 178 0 252 319 18 18 chr5 54804408 54804571 -148280961 + CT-rich Low_complexity Low_complexity 1 163 0 207 228 24 31 chr5 54804585 54804712 -148280820 + CT-rich Low_complexity Low_complexity 1 126 0 21 0 0 0 chr5 54805021 54805042 -148280490 + AT_rich Low_complexity Low_complexity 1 21 0 1430 174 52 11 chr5 54805318 54805698 -148279834 + AluJb SINE Alu 1 391 0 746 259 25 15 chr5 54806046 54806247 -148279285 + MER58A DNA MER1_type 7 209 -15 998 345 138 8 chr5 54806446 54807105 -148278427 + L2 LINE L2 2177 2921 -393 722 265 89 22 chr5 54807234 54807604 -148277928 - LTR37B LTR ERV1 -73 395 1 429 327 27 0 chr5 54807612 54807762 -148277770 - MIR SINE MIR -106 156 3 390 365 50 21 chr5 54808159 54808441 -148277091 - L1ME4a LINE L1 -213 5908 5619 413 262 30 82 chr5 54808680 54808866 -148276666 + MLT1H1 LTR MaLR 373 555 0 237 33 0 0 chr5 54810685 54810715 -148274817 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr5 54810908 54810929 -148274603 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr5 54811309 54811341 -148274191 + AT_rich Low_complexity Low_complexity 1 32 0 4704 139 31 1 chr5 54811850 54812633 -148272899 - L1PA16 LINE L1 -16 6150 5345 1798 112 11 14 chr5 54812669 54812947 -148272585 - L1PA8A LINE L1 -3 6128 5852 404 58 0 0 chr5 54812969 54813021 -148272511 - MLT2A1 LTR ERVL 0 444 393 292 134 0 30 chr5 54813061 54813128 -148272404 + (TG)n Simple_repeat Simple_repeat 1 65 0 241 152 0 0 chr5 54813285 54813331 -148272201 + LTR66 LTR ERVL 394 439 -171 * 2661 95 22 5 chr5 54813327 54813694 -148271838 - MLT2A1 LTR ERVL -71 373 1 3313 253 35 2 chr5 54813694 54814729 -148270803 - L1PA16 LINE L1 -810 5336 4268 1736 199 17 11 chr5 54815592 54815954 -148269578 - MLT1A1 LTR MaLR 0 365 2 1540 168 3 99 chr5 54816146 54816528 -148269004 - MER7A DNA MER2_type 0 346 4 356 167 26 13 chr5 54816550 54816628 -148268904 + MER67C LTR ERV1 595 673 -37 1156 144 18 52 chr5 54817205 54817434 -148268098 - Tigger2a DNA MER2_type -212 222 2 9944 206 26 17 chr5 54817721 54817809 -148267723 - L1PA16 LINE L1 -2889 3257 3171 183 80 0 0 chr5 54817809 54817834 -148267698 + (TG)n Simple_repeat Simple_repeat 2 26 0 9944 206 26 17 chr5 54817834 54820038 -148265494 - L1PA16 LINE L1 -2975 3171 944 23 0 0 0 chr5 54822094 54822117 -148263415 + AT_rich Low_complexity Low_complexity 1 23 0 247 305 0 42 chr5 54822172 54822290 -148263242 - MIR SINE MIR -52 210 98 237 65 0 0 chr5 54822443 54822474 -148263058 + (CA)n Simple_repeat Simple_repeat 2 32 0 194 308 137 8 chr5 54822993 54823110 -148262422 - MIR SINE MIR 0 262 131 4816 224 6 29 chr5 54823215 54824466 -148261066 - L1 LINE L1 -1359 4787 3566 775 226 10 25 chr5 54824479 54824683 -148260849 + L1P LINE L1 3354 3554 -2592 225 0 0 0 chr5 54824717 54824742 -148260790 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 1299 215 32 54 chr5 54825022 54825394 -148260138 + MLT1A1 LTR MaLR 2 365 0 1784 185 48 42 chr5 54826176 54826736 -148258796 + MLT2A2 LTR ERVL 1 554 0 32 43 0 0 chr5 54826793 54826839 -148258693 + AT_rich Low_complexity Low_complexity 1 46 0 251 274 27 0 chr5 54827142 54827215 -148258317 + L1MC4a LINE L1 6642 6716 -1092 742 276 49 28 chr5 54827241 54827527 -148258005 + L1MC4 LINE L1 6780 7071 -971 305 273 88 49 chr5 54827545 54828027 -148257505 + L1MC5 LINE L1 7130 7470 -492 3563 158 24 38 chr5 54828298 54828698 -148256834 + Tigger3b DNA MER2_type 3 392 -2636 2195 63 3 21 chr5 54828698 54829012 -148256520 - AluY SINE Alu 0 309 1 3563 158 24 38 chr5 54829012 54829317 -148256215 + Tigger3b DNA MER2_type 392 700 -531 456 118 26 0 chr5 54829321 54829397 -148256135 + AluS SINE Alu 1 78 -234 233 260 0 0 chr5 54829501 54829551 -148255981 + GA-rich Low_complexity Low_complexity 1 50 0 933 169 18 0 chr5 54831350 54831516 -148254016 - MLT1A1 LTR MaLR 0 365 197 2006 229 26 9 chr5 54831521 54831940 -148253592 - MLT2B3 LTR ERVL -128 426 1 262 253 35 46 chr5 54832251 54832338 -148253194 - MER5A DNA MER1_type -2 187 102 957 163 62 0 chr5 54833011 54833189 -148252343 + MSTA LTR MaLR 240 428 0 22 0 0 0 chr5 54833221 54833243 -148252289 + AT_rich Low_complexity Low_complexity 1 22 0 378 0 0 0 chr5 54833823 54833865 -148251667 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 316 319 65 22 chr5 54834619 54834757 -148250775 + MIR SINE MIR 28 171 -91 1427 111 58 0 chr5 54834757 54835000 -148250532 + L1MA6 LINE L1 6038 6294 -6 454 239 181 32 chr5 54835466 54835621 -148249911 - MER5A DNA MER1_type 0 189 12 1524 159 69 39 chr5 54835959 54836323 -148249209 + THE1C LTR MaLR 1 375 0 29 47 0 0 chr5 54836500 54836543 -148248989 + AT_rich Low_complexity Low_complexity 1 43 0 216 0 0 0 chr5 54837241 54837265 -148248267 + (A)n Simple_repeat Simple_repeat 1 24 0 2017 60 4 30 chr5 54837496 54837765 -148247767 - AluY SINE Alu -13 298 37 284 236 9 0 chr5 54837882 54837992 -148247540 + (TA)n Simple_repeat Simple_repeat 1 111 0 271 234 26 0 chr5 54837992 54838009 -148247523 + L1MC4 LINE L1 6614 6629 -1413 219 114 0 0 chr5 54838009 54838044 -148247488 + (CATA)n Simple_repeat Simple_repeat 1 35 0 271 234 26 0 chr5 54838044 54838069 -148247463 + L1MC4 LINE L1 6629 6692 -1350 * 326 267 20 0 chr5 54838045 54838146 -148247386 + (TA)n Simple_repeat Simple_repeat 2 104 0 24 0 0 0 chr5 54838308 54838332 -148247200 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr5 54838456 54838484 -148247048 + AT_rich Low_complexity Low_complexity 1 28 0 48 43 0 0 chr5 54838668 54838737 -148246795 + AT_rich Low_complexity Low_complexity 1 69 0 4844 190 30 12 chr5 54838882 54840012 -148245520 + L1MA7 LINE L1 5145 6290 -1 15976 84 8 6 chr5 54840265 54840644 -148244888 - HERVL LTR ERVL -292 5362 4985 2457 22 4 0 chr5 54840644 54840919 -148244613 - AluYa5 SINE Alu -9 302 27 15976 84 8 6 chr5 54840919 54843235 -148242297 - HERVL LTR ERVL -669 4985 2609 224 220 9 37 chr5 54844088 54844197 -148241335 + (TTAA)n Simple_repeat Simple_repeat 4 109 0 908 202 6 0 chr5 54845568 54845736 -148239796 + AluJb SINE Alu 136 304 -8 210 240 0 0 chr5 54846693 54846743 -148238789 + A-rich Low_complexity Low_complexity 1 50 0 2132 79 4 4 chr5 54847878 54848158 -148237374 - AluY SINE Alu -2 309 30 2117 125 0 25 chr5 54848224 54848545 -148236987 - AluSq SINE Alu 0 313 1 2586 114 8 0 chr5 54848684 54849060 -148236472 + L1P4 LINE L1 5304 5682 -486 370 239 39 15 chr5 54849076 54849206 -148236326 - LTR37B LTR ERV1 -8 460 328 550 61 102 31 chr5 54849438 54849487 -148236045 - MLT2A1 LTR ERVL 0 444 400 257 75 25 0 chr5 54849487 54849527 -148236005 + (TG)n Simple_repeat Simple_repeat 2 42 0 550 61 102 31 chr5 54849527 54849575 -148235957 - MLT2A1 LTR ERVL -44 400 340 4305 194 28 36 chr5 54849575 54850469 -148235063 - L1MC1 LINE L1 -115 6218 5318 200 33 0 33 chr5 54850469 54850499 -148235033 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1575 171 4 4 chr5 54850503 54850772 -148234760 - AluSx SINE Alu -30 282 14 4305 194 28 36 chr5 54850772 54850867 -148234665 - L1MC1 LINE L1 -1018 5315 5233 568 140 21 0 chr5 54850967 54851060 -148234472 - HERVK22 LTR ERVK -6652 185 91 3326 84 13 4 chr5 54851134 54851587 -148233945 - LTR22A LTR ERVK -1 457 1 189 0 0 0 chr5 54851727 54851748 -148233784 + (TG)n Simple_repeat Simple_repeat 2 22 0 323 313 35 55 chr5 54852339 54852540 -148232992 - MIR3 SINE MIR 0 208 12 2036 115 4 7 chr5 54852611 54852920 -148232612 - AluSx SINE Alu 0 312 5 1034 225 0 0 chr5 54853212 54853425 -148232107 - L1PB4 LINE L1 -3 6153 5941 411 330 63 42 chr5 54853830 54854115 -148231417 - L2 LINE L2 -2 3311 3021 21 0 0 0 chr5 54854386 54854407 -148231125 + AT_rich Low_complexity Low_complexity 1 21 0 1677 152 77 37 chr5 54854775 54855098 -148230434 - MER1B DNA MER1_type 0 337 2 2630 52 0 0 chr5 54855609 54855918 -148229614 + AluY SINE Alu 2 310 -1 477 0 0 0 chr5 54857446 54857499 -148228033 + (CA)n Simple_repeat Simple_repeat 2 54 0 433 162 57 57 chr5 54857641 54857746 -148227786 + MLT1D LTR MaLR 401 505 0 1576 204 64 3 chr5 54857803 54858117 -148227415 - MSTB LTR MaLR 0 426 94 1455 124 40 12 chr5 54858153 54858403 -148227129 - L1PA13 LINE L1 -20 6143 5887 432 159 0 0 chr5 54858400 54858469 -148227063 + L1P LINE L1 4926 4994 -1152 * 382 111 0 0 chr5 54858469 54858523 -148227009 - MSTB LTR MaLR -371 55 2 2006 148 0 0 chr5 54858547 54858851 -148226681 + AluSq SINE Alu 1 304 -9 2574 116 97 5 chr5 54859244 54859648 -148225884 + MLT2A1 LTR ERVL 4 444 0 18408 104 7 20 chr5 54859648 54862341 -148223191 + HERVL-A1 LTR ERVL 1 2658 -2996 1345 248 57 55 chr5 54862557 54863032 -148222500 + MLT2B1 LTR ERVL 1 476 -44 218 315 112 66 chr5 54863057 54863254 -148222278 + L2 LINE L2 1272 1477 -1837 1319 218 26 49 chr5 54863938 54864245 -148221287 - AluJo SINE Alu -12 300 1 274 237 31 72 chr5 54864306 54864403 -148221129 + L1M4 LINE L1 16 108 -6434 * 4588 184 32 12 chr5 54864402 54865955 -148219577 - L1PA16 LINE L1 -7 6159 4575 455 274 14 94 chr5 54865964 54866176 -148219356 + L1M4 LINE L1 132 326 -6216 684 274 23 37 chr5 54866179 54866478 -148219054 - L1M4 LINE L1 -4907 1635 1341 2034 259 77 22 chr5 54866511 54867522 -148218010 + L1M4 LINE L1 4182 5248 -1396 284 358 52 36 chr5 54867954 54868261 -148217271 + HERVL LTR ERVL 3046 3357 -2297 1071 319 163 6 chr5 54869138 54869855 -148215677 - L2 LINE L2 -913 2401 1572 323 49 0 0 chr5 54870487 54870528 -148215004 + MADE1 DNA Mariner 40 80 0 290 339 39 15 chr5 54870596 54870726 -148214806 - MIR3 SINE MIR -32 176 44 929 233 150 109 chr5 54870781 54871369 -148214163 + MLT1E1 LTR MaLR 6 617 -37 2013 141 7 0 chr5 54872740 54873039 -148212493 - AluSq SINE Alu -7 306 6 367 145 0 92 chr5 54874031 54874107 -148211425 - Charlie3 DNA MER1_type -2641 69 1 1716 120 4 0 chr5 54874140 54874373 -148211159 + AluSx SINE Alu 34 267 -45 757 216 42 84 chr5 54874536 54874823 -148210709 + MER52A LTR ERV1 398 672 -1083 * 2330 214 12 0 chr5 54874817 54875248 -148210284 + MER52A LTR ERV1 1320 1755 0 597 223 137 0 chr5 54875257 54875448 -148210084 + MLT1D LTR MaLR 284 467 0 233 310 9 35 chr5 54875453 54875569 -148209963 + L1M4 LINE L1 3284 3396 -2750 640 282 29 12 chr5 54875663 54875908 -148209624 + L1MD3 LINE L1 7728 7976 -19 2127 123 0 0 chr5 54875916 54876217 -148209315 + AluSc SINE Alu 1 301 -8 370 196 44 101 chr5 54876263 54876383 -148209149 - Charlie7 DNA MER1_type -903 1709 1599 2447 71 0 0 chr5 54876383 54876694 -148208838 - AluY SINE Alu 0 311 1 370 196 44 101 chr5 54876694 54876731 -148208801 - Charlie7 DNA MER1_type -1013 1599 1561 21 36 0 0 chr5 54876803 54876831 -148208701 + AT_rich Low_complexity Low_complexity 1 28 0 33 0 0 0 chr5 54876963 54876996 -148208536 + AT_rich Low_complexity Low_complexity 1 33 0 1570 207 0 17 chr5 54877081 54877194 -148208338 + AluJb SINE Alu 3 116 -196 240 35 0 0 chr5 54877194 54877223 -148208309 + (CA)n Simple_repeat Simple_repeat 2 30 0 1570 207 0 17 chr5 54877223 54877404 -148208128 + AluJb SINE Alu 116 292 -20 253 292 83 33 chr5 54878100 54878220 -148207312 - MIR SINE MIR -37 225 100 222 253 0 0 chr5 54878348 54878431 -148207101 + (TATG)n Simple_repeat Simple_repeat 2 84 0 261 134 23 64 chr5 54878453 54878624 -148206908 + (TA)n Simple_repeat Simple_repeat 1 164 0 1543 268 61 25 chr5 54879567 54880464 -148205068 + L1P3 LINE L1 1 1035 -4840 1969 226 83 37 chr5 54880609 54881576 -148203956 + L1MC4 LINE L1 4568 5562 -622 1942 142 3 29 chr5 54881576 54881887 -148203645 + AluSx SINE Alu 7 309 -3 1969 226 83 37 chr5 54881887 54882531 -148203001 + L1MC4 LINE L1 5562 6175 -9 477 367 68 21 chr5 54882784 54883258 -148202274 - L2 LINE L2 -537 2777 2282 538 281 104 37 chr5 54883621 54884083 -148201449 - Charlie2 DNA MER1_type -482 2380 1888 1363 203 20 37 chr5 54884099 54884448 -148201084 + MLT1A1 LTR MaLR 23 365 0 189 74 0 0 chr5 54884558 54884585 -148200947 + (T)n Simple_repeat Simple_repeat 1 27 0 550 333 77 38 chr5 54884973 54885364 -148200168 + L2 LINE L2 141 546 -2768 282 56 0 0 chr5 54886070 54886106 -148199426 + (GA)n Simple_repeat Simple_repeat 1 36 0 1181 296 118 16 chr5 54888106 54888792 -148196740 - L1ME3A LINE L1 -41 6129 5374 349 271 96 68 chr5 54888794 54889086 -148196446 - L1ME3A LINE L1 -1225 4921 4622 5989 192 24 18 chr5 54889087 54891383 -148194149 - L1PA16 LINE L1 -2 6164 3829 1773 146 159 26 chr5 54891475 54891853 -148193679 + MSTA LTR MaLR 1 428 0 362 340 123 8 chr5 54893180 54893415 -148192117 + MLT1I LTR MaLR 1 262 -147 701 278 67 34 chr5 54893802 54894242 -148191290 - L1M4 LINE L1 -1313 4833 4373 60 27 0 0 chr5 54894242 54894316 -148191216 + AT_rich Low_complexity Low_complexity 1 74 0 1578 197 13 20 chr5 54894494 54894799 -148190733 + AluJb SINE Alu 1 303 -9 295 373 0 0 chr5 54894882 54895000 -148190532 - HERV16 LTR ERVL -2389 3096 2979 414 257 38 9 chr5 54895074 54895179 -148190353 - HERV16 LTR ERVL -3670 1326 1219 540 278 66 26 chr5 54895208 54895435 -148190097 - HERV16 LTR ERVL -3830 1166 931 917 91 68 0 chr5 54895445 54895577 -148189955 + MSTA LTR MaLR 1 141 -287 3409 194 37 18 chr5 54895588 54896687 -148188845 - L1M2 LINE L1 -645 5667 4549 7491 129 20 0 chr5 54896719 54897848 -148187684 - THE1B-int LTR MaLR -428 1152 1 1876 178 40 9 chr5 54897850 54898199 -148187333 - THE1B LTR MaLR -2 362 3 3094 206 16 6 chr5 54898201 54898889 -148186643 - L1M4 LINE L1 -1802 4344 3650 198 103 0 0 chr5 54899517 54899546 -148185986 + (TC)n Simple_repeat Simple_repeat 2 30 0 2583 150 58 14 chr5 54899546 54900060 -148185472 - Tigger3(Golem) DNA MER2_type -2 3027 2491 1249 148 16 20 chr5 54900060 54900310 -148185222 - AluSx SINE Alu -17 295 47 2036 80 3 0 chr5 54900424 54900711 -148184821 + HERVL-A1 LTR ERVL 5367 5654 0 3014 93 40 5 chr5 54900712 54901101 -148184431 + MLT2A1 LTR ERVL 2 409 -35 491 45 15 0 chr5 54901101 54901167 -148184365 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 3014 93 40 5 chr5 54901167 54901205 -148184327 + MLT2A1 LTR ERVL 409 444 0 24 67 0 0 chr5 54901748 54901793 -148183739 + AT_rich Low_complexity Low_complexity 1 45 0 240 59 0 0 chr5 54902127 54902161 -148183371 + (TG)n Simple_repeat Simple_repeat 2 35 0 30 52 0 39 chr5 54902216 54902293 -148183239 + AT_rich Low_complexity Low_complexity 1 74 0 23 0 0 0 chr5 54902449 54902472 -148183060 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr5 54903073 54903098 -148182434 + AT_rich Low_complexity Low_complexity 1 25 0 245 137 39 0 chr5 54903265 54903316 -148182216 + GA-rich Low_complexity Low_complexity 4 56 0 621 185 23 23 chr5 54904239 54904369 -148181163 - MLT1H LTR MaLR -39 510 381 1354 232 133 60 chr5 54905388 54906293 -148179239 - L1M4 LINE L1 -1042 5104 4110 189 0 0 0 chr5 54906294 54906315 -148179217 + (A)n Simple_repeat Simple_repeat 1 21 0 1958 110 0 27 chr5 54906318 54906619 -148178913 + AluSx SINE Alu 3 295 -17 1260 241 26 60 chr5 54907113 54907194 -148178338 - L1M4 LINE L1 -2008 4138 4056 1378 208 115 20 chr5 54907194 54907550 -148177982 - MLT1B LTR MaLR 0 390 1 1260 241 26 60 chr5 54907550 54907965 -148177567 - L1M4 LINE L1 -2090 4056 3659 231 325 0 12 chr5 54907965 54908048 -148177484 + MLT1I LTR MaLR 1 82 -511 204 355 21 11 chr5 54909296 54909389 -148176143 - MIR SINE MIR -124 138 45 21 0 0 0 chr5 54909710 54909731 -148175801 + AT_rich Low_complexity Low_complexity 1 21 0 269 343 55 30 chr5 54910373 54910574 -148174958 + MIR SINE MIR 1 206 -56 22 0 0 0 chr5 54910707 54910729 -148174803 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr5 54911560 54911587 -148173945 + AT_rich Low_complexity Low_complexity 1 27 0 248 313 83 0 chr5 54911864 54911960 -148173572 + MIR SINE MIR 113 216 -46 2397 40 0 52 chr5 54912260 54912587 -148172945 + AluY SINE Alu 1 310 -1 213 135 27 0 chr5 54912865 54912902 -148172630 + GA-rich Low_complexity Low_complexity 2 39 0 610 261 137 13 chr5 54913230 54913464 -148172068 + MLT1I LTR MaLR 147 409 0 272 339 38 33 chr5 54913464 54913647 -148171885 - L2 LINE L2 -736 2578 2395 44 0 0 0 chr5 54914188 54914232 -148171300 + AT_rich Low_complexity Low_complexity 1 44 0 356 259 86 17 chr5 54915526 54915700 -148169832 - L1ME3 LINE L1 -9 6153 5968 600 277 39 17 chr5 54915723 54915954 -148169578 + L1M4 LINE L1 25 260 -6282 1367 309 59 32 chr5 54915971 54916106 -148169426 + L1M4 LINE L1 323 453 -6089 198 0 0 0 chr5 54916106 54916128 -148169404 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1367 309 59 32 chr5 54916128 54916622 -148168910 + L1M4 LINE L1 453 969 -5573 577 214 69 11 chr5 54916615 54916891 -148168641 + L1 LINE L1 3193 3557 -2589 * 680 179 0 8 chr5 54916893 54917027 -148168505 + L1MA8 LINE L1 6020 6152 -139 360 0 0 0 chr5 54917751 54917791 -148167741 + (A)n Simple_repeat Simple_repeat 1 40 0 204 320 39 13 chr5 54918433 54918511 -148167021 + L2 LINE L2 3222 3301 -12 493 225 28 49 chr5 54918627 54918769 -148166763 + MLT1A2 LTR MaLR 1 139 -226 228 122 0 0 chr5 54918850 54918891 -148166641 + (GA)n Simple_repeat Simple_repeat 2 42 0 1847 237 21 5 chr5 54918891 54919309 -148166223 + MSTB LTR MaLR 2 426 0 6565 218 46 11 chr5 54919320 54920684 -148164848 + MSTB-int LTR MaLR 6 1417 -234 1846 145 49 20 chr5 54920738 54921082 -148164450 - L1PB3 LINE L1 -2 6152 5799 242 220 0 0 chr5 54921082 54921132 -148164400 + MSTB-int LTR MaLR 1414 1463 -188 860 199 42 0 chr5 54921138 54921304 -148164228 + MSTB LTR MaLR 239 411 -15 279 0 0 0 chr5 54921313 54921344 -148164188 + (CA)n Simple_repeat Simple_repeat 2 32 0 643 272 5 21 chr5 54921347 54921538 -148163994 + MLT1A2 LTR MaLR 187 374 0 243 0 0 0 chr5 54921684 54921711 -148163821 + (A)n Simple_repeat Simple_repeat 1 27 0 507 305 149 19 chr5 54921714 54922029 -148163503 - L2 LINE L2 -774 2540 2185 406 321 119 22 chr5 54922030 54922341 -148163191 - L2 LINE L2 -1332 1982 1642 1808 127 24 3 chr5 54922375 54922667 -148162865 + AluSg SINE Alu 3 300 -10 207 100 0 0 chr5 54922668 54922698 -148162834 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 1964 61 389 162 chr5 54922700 54923274 -148162258 - LTR12 LTR ERV1 -3 711 8 183 100 0 0 chr5 54923275 54923305 -148162227 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 588 314 106 16 chr5 54923305 54923608 -148161924 - L2 LINE L2 -1686 1628 1299 186 373 45 0 chr5 54923804 54923871 -148161661 + L2 LINE L2 3153 3222 -50 2549 58 0 0 chr5 54924503 54924812 -148160720 + AluY SINE Alu 1 309 -2 209 336 46 38 chr5 54924815 54925053 -148160479 + L2 LINE L2 2266 2505 -809 527 106 11 78 chr5 54925192 54925553 -148159979 + (TA)n Simple_repeat Simple_repeat 1 336 0 312 146 19 39 chr5 54925580 54925683 -148159849 + (TATATG)n Simple_repeat Simple_repeat 2 102 0 830 232 33 30 chr5 54925764 54926110 -148159422 - L1 LINE L1 -3822 3743 3315 563 283 84 11 chr5 54926118 54926559 -148158973 + L1MB7 LINE L1 2894 3366 -2780 * 3397 255 63 34 chr5 54926547 54927124 -148158408 + L1MB7 LINE L1 3672 4231 -1953 231 36 0 0 chr5 54927124 54927152 -148158380 + (CA)n Simple_repeat Simple_repeat 2 29 0 3397 255 63 34 chr5 54927152 54929011 -148156521 + L1MB7 LINE L1 4231 6176 -8 1078 304 42 4 chr5 54929010 54929461 -148156071 - L1ME3 LINE L1 -180 5982 5515 * 304 228 97 53 chr5 54929510 54929624 -148155908 - L1MEc LINE L1 -4131 2265 2147 44 35 0 0 chr5 54930173 54930231 -148155301 + AT_rich Low_complexity Low_complexity 1 58 0 2411 64 10 10 chr5 54930326 54930637 -148154895 + AluY SINE Alu 1 311 0 1594 131 24 57 chr5 54930810 54931134 -148154398 + AluSx SINE Alu 1 314 0 252 130 0 0 chr5 54931547 54931593 -148153939 + (GA)n Simple_repeat Simple_repeat 1 46 0 2027 117 3 16 chr5 54932917 54933224 -148152308 + AluSq SINE Alu 1 303 -10 423 248 9 0 chr5 54934689 54934802 -148150730 - LTR43 LTR ERV1 -309 293 180 660 271 48 33 chr5 54935053 54935263 -148150269 - MER58A DNA MER1_type -10 214 2 1465 198 13 48 chr5 54936780 54937232 -148148300 + MLT1D LTR MaLR 1 505 0 2264 239 42 16 chr5 54937415 54937963 -148147569 - REP3 LTR ERV 0 562 1 21 0 0 0 chr5 54938972 54938993 -148146539 + AT_rich Low_complexity Low_complexity 1 21 0 2812 189 64 7 chr5 54939582 54940147 -148145385 - Tigger1 DNA MER2_type -1821 597 1 343 257 43 9 chr5 54940148 54940292 -148145240 + L1MB1 LINE L1 3048 3208 -4357 1477 207 41 32 chr5 54940352 54940695 -148144837 - MER4D LTR ERV1 -12 891 546 576 198 0 86 chr5 54940692 54940751 -148144781 - MER4E LTR ERV1 -588 284 222 * 2097 122 0 0 chr5 54940751 54941045 -148144487 + AluSg SINE Alu 1 294 -16 576 198 0 86 chr5 54941045 54941178 -148144354 - MER4E LTR ERV1 -650 222 1 6034 227 45 14 chr5 54941207 54942969 -148142563 + L1MB1 LINE L1 3281 5115 -2450 198 0 0 0 chr5 54942969 54942991 -148142541 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 6034 227 45 14 chr5 54942991 54943095 -148142437 + L1MB1 LINE L1 5115 5214 -2351 2191 161 36 5 chr5 54943198 54943615 -148141917 + L1MB1 LINE L1 6849 7278 -309 517 203 7 14 chr5 54943617 54943760 -148141772 + CT-rich Low_complexity Low_complexity 3 144 0 1495 206 0 7 chr5 54943760 54944042 -148141490 - AluJo SINE Alu -32 280 1 1515 155 73 16 chr5 54944045 54944348 -148141184 + L1MB1 LINE L1 7264 7583 -4 306 340 11 0 chr5 54945850 54945944 -148139588 + MIR3 SINE MIR 76 170 -38 2390 79 0 0 chr5 54946134 54946426 -148139106 + AluSc SINE Alu 6 297 -12 353 326 85 13 chr5 54946575 54946799 -148138733 - MIR SINE MIR -21 241 2 1552 201 27 27 chr5 54946865 54947234 -148138298 + MLT1A2 LTR MaLR 4 372 -2 297 0 0 0 chr5 54947292 54947325 -148138207 + (A)n Simple_repeat Simple_repeat 1 33 0 595 167 28 0 chr5 54947685 54947793 -148137739 + MLT1C LTR MaLR 1 111 -356 207 69 0 0 chr5 54949165 54949194 -148136338 + (TTC)n Simple_repeat Simple_repeat 2 30 0 1561 186 29 7 chr5 54949248 54949527 -148136005 - AluJo SINE Alu -19 293 9 304 280 32 72 chr5 54949576 54949701 -148135831 - L1MB8 LINE L1 -127 6046 5920 1323 220 74 59 chr5 54949701 54950221 -148135311 + MER39 LTR ERV1 1 701 -6 751 202 46 12 chr5 54950226 54950399 -148135133 - L1ME1 LINE L1 -243 5923 5745 1023 236 11 23 chr5 54950407 54950669 -148134863 + MLT1E1 LTR MaLR 389 497 -8 439 319 78 53 chr5 54950720 54951155 -148134377 - L2 LINE L2 -351 2963 2518 1921 158 106 35 chr5 54953148 54953357 -148132175 - L1MB7 LINE L1 -59 6125 5932 2028 111 93 35 chr5 54953357 54953701 -148131831 + THE1B LTR MaLR 1 364 0 1921 158 106 35 chr5 54953701 54953946 -148131586 - L1MB7 LINE L1 -252 5932 5639 2086 191 115 11 chr5 54954069 54954531 -148131001 - MLT2B1 LTR ERVL -10 510 1 22 56 0 0 chr5 54954764 54954800 -148130732 + AT_rich Low_complexity Low_complexity 1 36 0 740 311 31 4 chr5 54954858 54955083 -148130449 + MIR SINE MIR 19 249 -13 27 92 0 0 chr5 54956844 54956920 -148128612 + AT_rich Low_complexity Low_complexity 1 76 0 234 0 0 0 chr5 54956964 54956990 -148128542 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 279 361 0 0 chr5 54956991 54957063 -148128469 - L2 LINE L2 -15 3257 3186 2558 271 82 77 chr5 54957067 54957146 -148128386 - L2 LINE L2 -12 3301 3224 2265 88 3 0 chr5 54957146 54957452 -148128080 + AluY SINE Alu 3 309 -2 2558 271 82 77 chr5 54957452 54957591 -148127941 - L2 LINE L2 -89 3224 3087 333 0 0 0 chr5 54957591 54957628 -148127904 + (TG)n Simple_repeat Simple_repeat 1 37 0 2558 271 82 77 chr5 54957628 54958988 -148126544 - L2 LINE L2 -226 3087 1716 637 179 43 0 chr5 54959543 54959660 -148125872 + MLT1C LTR MaLR 1 122 -345 1981 78 63 0 chr5 54959660 54959931 -148125601 + AluSq SINE Alu 1 288 -25 273 247 0 62 chr5 54959938 54960002 -148125530 + L1MB5 LINE L1 3445 3503 -2643 1997 154 0 7 chr5 54960002 54960301 -148125231 + AluJb SINE Alu 3 299 -13 273 247 0 62 chr5 54960301 54960333 -148125199 + L1MB5 LINE L1 3503 3535 -2611 5473 205 91 44 chr5 54960344 54961022 -148124510 + L1MB5 LINE L1 3837 4482 -1692 1672 166 37 64 chr5 54961022 54961396 -148124136 - MLT1A1 LTR MaLR 0 365 2 5473 205 91 44 chr5 54961396 54962336 -148123196 + L1MB5 LINE L1 4482 5589 -585 2447 74 0 6 chr5 54962336 54962648 -148122884 + AluY SINE Alu 1 310 -1 5473 205 91 44 chr5 54962648 54963239 -148122293 + L1MB5 LINE L1 5589 6151 -23 23 68 0 0 chr5 54964091 54964135 -148121397 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr5 54966528 54966549 -148118983 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr5 54967077 54967108 -148118424 + AT_rich Low_complexity Low_complexity 1 31 0 894 286 5 5 chr5 54969618 54969835 -148115697 + MIR SINE MIR 43 259 -3 189 339 118 39 chr5 54969932 54970059 -148115473 + MIR3 SINE MIR 24 160 -48 217 293 53 0 chr5 54970062 54970137 -148115395 - MIR3 SINE MIR -6 202 124 23 33 0 0 chr5 54971797 54971827 -148113705 + AT_rich Low_complexity Low_complexity 1 30 0 319 246 201 0 chr5 54972127 54972261 -148113271 - LTR33 LTR ERVL -348 173 13 420 206 11 56 chr5 54972720 54972900 -148112632 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 238 152 61 45 chr5 54973096 54973162 -148112370 + L1MC4 LINE L1 6637 6703 -1339 285 279 0 15 chr5 54973162 54973298 -148112234 + (TA)n Simple_repeat Simple_repeat 2 135 0 379 313 216 19 chr5 54973397 54973768 -148111764 - L2 LINE L2 -47 3266 2823 1357 287 121 29 chr5 54973782 54974403 -148111129 - L2 LINE L2 -640 2674 1997 1716 182 0 13 chr5 54974403 54974710 -148110822 + AluJo SINE Alu 1 303 -9 210 234 0 0 chr5 54975876 54975923 -148109609 - MIR SINE MIR -119 143 97 337 290 28 15 chr5 54976089 54976250 -148109282 - MER5A DNA MER1_type -8 170 7 393 297 39 14 chr5 54977657 54977878 -148107654 - MLT1K LTR MaLR -290 298 3 1393 82 13 69 chr5 54978404 54978637 -148106895 - L1MA2 LINE L1 0 6304 6085 398 116 21 21 chr5 54979308 54979403 -148106129 + (TA)n Simple_repeat Simple_repeat 2 96 0 264 224 0 0 chr5 54979439 54979506 -148106026 + (TA)n Simple_repeat Simple_repeat 1 67 0 331 319 0 0 chr5 54979508 54979599 -148105933 + L1MC4 LINE L1 6613 6703 -1339 1261 124 101 0 chr5 54979759 54979968 -148105564 + MER30 DNA MER1_type 1 230 0 22 35 0 0 chr5 54980210 54980239 -148105293 + AT_rich Low_complexity Low_complexity 1 29 0 235 259 0 0 chr5 54980811 54980865 -148104667 + (TA)n Simple_repeat Simple_repeat 2 55 0 829 195 23 17 chr5 54982119 54982293 -148103239 + MER5A DNA MER1_type 9 183 -6 1384 183 10 35 chr5 54982938 54983228 -148102304 + AluJb SINE Alu 26 308 -4 2050 108 10 3 chr5 54986076 54986382 -148099150 - AluSg SINE Alu -2 308 1 1111 109 31 57 chr5 54986674 54986903 -148098629 + L1MA2 LINE L1 6082 6304 0 387 206 103 137 chr5 54987023 54987227 -148098305 + MER112 DNA MER1_type 9 205 -55 296 157 39 0 chr5 54988144 54988195 -148097337 + L2 LINE L2 3250 3302 -11 1376 164 35 12 chr5 54988565 54988888 -148096644 - MER33 DNA MER1_type -6 318 1 394 269 181 19 chr5 54989567 54989727 -148095805 - MER5A DNA MER1_type 0 189 4 389 246 40 146 chr5 54989737 54989936 -148095596 + MER5B DNA MER1_type 1 178 0 2206 128 13 36 chr5 54990372 54990756 -148094776 - L1MA7 LINE L1 -141 6150 5776 498 155 10 10 chr5 54990756 54990857 -148094675 + L1MA7 LINE L1 6184 6286 -5 2096 112 3 14 chr5 54990862 54991144 -148094388 + AluSx SINE Alu 1 301 -11 181 77 0 0 chr5 54991144 54991170 -148094362 + (TAAA)n Simple_repeat Simple_repeat 2 80 0 2096 112 3 14 chr5 54991170 54991182 -148094350 + AluSx SINE Alu 301 312 0 24 0 0 0 chr5 54991816 54991840 -148093692 + AT_rich Low_complexity Low_complexity 1 24 0 210 118 0 0 chr5 54992647 54992681 -148092851 + (GA)n Simple_repeat Simple_repeat 2 35 0 29 60 0 0 chr5 54995004 54995054 -148090478 + AT_rich Low_complexity Low_complexity 1 50 0 1443 196 12 4 chr5 54995057 54995312 -148090220 + AluJb SINE Alu 33 289 -23 285 118 0 0 chr5 54995314 54995365 -148090167 + (CA)n Simple_repeat Simple_repeat 1 51 0 267 31 0 0 chr5 54995782 54995814 -148089718 + (TA)n Simple_repeat Simple_repeat 2 33 0 518 291 109 9 chr5 54995893 54996113 -148089419 - MIR SINE MIR -1 261 20 357 241 0 12 chr5 54996176 54996259 -148089273 + MIR SINE MIR 73 154 -108 245 111 0 0 chr5 54996954 54996990 -148088542 + U2 snRNA snRNA 1 36 -152 415 363 131 29 chr5 54997728 54998042 -148087490 - L2 LINE L2 0 3272 2927 1050 175 0 0 chr5 54998113 54998279 -148087253 + FRAM SINE Alu 1 163 -13 189 356 75 21 chr5 54998795 54999034 -148086498 - L2 LINE L2 -1121 2193 1942 423 307 235 0 chr5 54999903 55000056 -148085476 - MER5A DNA MER1_type 0 189 1 194 329 82 43 chr5 55000400 55000607 -148084925 - L2 LINE L2 -1605 1709 1495 1685 176 34 3 chr5 55000733 55001056 -148084476 - MSTB LTR MaLR -93 333 1 343 261 122 6 chr5 55001188 55001368 -148084164 + LTR33A LTR ERVL 323 523 0 249 119 0 0 chr5 55001994 55002036 -148083496 + (TG)n Simple_repeat Simple_repeat 1 42 0 729 125 44 0 chr5 55002621 55002757 -148082775 + L1MA3 LINE L1 6164 6305 0 2135 187 83 53 chr5 55004579 55005179 -148080353 - MLT1E3 LTR MaLR -1 623 6 273 250 28 14 chr5 55006426 55006498 -148079034 + GA-rich Low_complexity Low_complexity 3 75 0 2004 148 3 0 chr5 55007167 55007478 -148078054 - AluSx SINE Alu 0 312 1 1878 200 104 40 chr5 55007660 55008189 -148077343 - MLT1F1 LTR MaLR -4 563 1 21 0 0 0 chr5 55008418 55008439 -148077093 + AT_rich Low_complexity Low_complexity 1 21 0 277 322 58 16 chr5 55010744 55010865 -148074667 + L2 LINE L2 3178 3303 -10 297 430 49 0 chr5 55011247 55011389 -148074143 + L2 LINE L2 3087 3235 -37 1169 148 74 40 chr5 55012181 55012550 -148072982 - MLT1C LTR MaLR 0 390 21 3108 111 126 0 chr5 55012705 55013173 -148072359 - MER1A DNA MER1_type 0 527 1 546 231 39 8 chr5 55013416 55013546 -148071986 + MIR SINE MIR 109 242 -20 437 286 40 16 chr5 55015661 55015787 -148069745 + MIR SINE MIR 16 144 -64 369 43 0 0 chr5 55017643 55017690 -148067842 + (TG)n Simple_repeat Simple_repeat 2 48 0 2213 198 79 13 chr5 55018133 55018654 -148066878 - MER119 DNA MER1_type 0 583 29 269 267 0 0 chr5 55019175 55019250 -148066282 + HAL1 LINE L1 968 1042 -1465 219 139 0 0 chr5 55019505 55019541 -148065991 + (CA)n Simple_repeat Simple_repeat 1 36 0 1521 189 22 31 chr5 55019546 55019901 -148065631 + MLT1A1 LTR MaLR 14 365 0 366 188 38 0 chr5 55021174 55021254 -148064278 - MIR SINE MIR -27 235 153 1835 129 32 0 chr5 55021697 55021811 -148063721 + AluSq SINE Alu 1 110 -203 237 65 0 0 chr5 55021811 55021842 -148063690 + (CTAAA)n Simple_repeat Simple_repeat 5 35 0 1835 129 32 0 chr5 55021842 55022006 -148063526 + AluSq SINE Alu 110 288 -25 2227 95 0 3 chr5 55022227 55022559 -148062973 - AluSq SINE Alu 0 331 1 279 173 0 0 chr5 55022656 55022708 -148062824 + (TA)n Simple_repeat Simple_repeat 1 52 0 226 71 24 24 chr5 55026087 55026129 -148059403 + (TG)n Simple_repeat Simple_repeat 2 43 0 267 295 0 13 chr5 55027032 55027110 -148058422 + GA-rich Low_complexity Low_complexity 2 78 0 432 0 0 0 chr5 55028090 55028175 -148057357 + (CA)n Simple_repeat Simple_repeat 1 133 0 432 0 0 0 chr5 55028175 55028223 -148057309 + (CA)n Simple_repeat Simple_repeat 2 49 0 216 261 0 0 chr5 55029393 55029462 -148056070 + T-rich Low_complexity Low_complexity 1 69 0 207 139 0 0 chr5 55030154 55030190 -148055342 + (TG)n Simple_repeat Simple_repeat 2 37 0 504 0 0 0 chr5 55031721 55031777 -148053755 + (CA)n Simple_repeat Simple_repeat 2 57 0 24 32 0 0 chr5 55032141 55032172 -148053360 + AT_rich Low_complexity Low_complexity 1 31 0 260 327 18 0 chr5 55032237 55032346 -148053186 + MIR3 SINE MIR 74 185 -23 362 70 18 0 chr5 55032713 55032770 -148052762 + AluSp/q SINE Alu 241 298 -5 2036 106 11 3 chr5 55033863 55034146 -148051386 + AluSq SINE Alu 29 313 0 204 118 29 0 chr5 55034146 55034180 -148051352 + GA-rich Low_complexity Low_complexity 2 36 0 1605 192 0 10 chr5 55037496 55037787 -148047745 + AluJo SINE Alu 11 298 -14 210 37 0 0 chr5 55037787 55037814 -148047718 + (TA)n Simple_repeat Simple_repeat 2 28 0 195 42 0 0 chr5 55037813 55037837 -148047695 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 871 287 13 4 chr5 55037952 55038182 -148047350 + MIR SINE MIR 2 233 -29 417 265 52 133 chr5 55038184 55038508 -148047024 + L2 LINE L2 2980 3277 -36 376 271 45 38 chr5 55038743 55038876 -148046656 - MIR SINE MIR -72 190 57 2089 120 32 112 chr5 55039418 55039692 -148045840 - MER4E LTR ERV1 -28 738 444 1885 88 72 0 chr5 55039692 55039954 -148045578 + AluSc SINE Alu 1 281 -28 270 0 0 0 chr5 55039954 55039984 -148045548 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2089 120 32 112 chr5 55039984 55040324 -148045208 - MER4E LTR ERV1 -320 446 1 1509 84 56 0 chr5 55040666 55040880 -148044652 - L1PA11 LINE L1 0 6174 5949 371 161 81 0 chr5 55040965 55041052 -148044480 + AluJ/FRAM SINE Alu 225 299 -3 515 121 0 11 chr5 55041054 55041145 -148044387 + (GGGGA)n Simple_repeat Simple_repeat 1 90 0 1626 193 112 42 chr5 55041214 55041757 -148043775 + MLT1G LTR MaLR 3 583 -7 273 306 70 54 chr5 55041961 55042147 -148043385 + MLT1J LTR MaLR 111 299 -212 389 230 44 44 chr5 55042358 55042493 -148043039 + MLT1J LTR MaLR 329 463 -48 267 327 113 40 chr5 55043668 55043916 -148041616 - L2 LINE L2 0 3313 3048 1889 216 46 63 chr5 55044189 55044792 -148040740 + MER7C DNA MER2_type 8 600 -2 216 338 62 0 chr5 55045773 55045853 -148039679 + MER91C DNA MER1_type 31 115 -25 2713 32 0 0 chr5 55047592 55047903 -148037629 - AluYb8 SINE Alu -7 311 1 1411 127 12 36 chr5 55049546 55049799 -148035733 + MER50 LTR ERV1 2 248 -486 * 1702 129 45 26 chr5 55049793 55050102 -148035430 + MER50 LTR ERV1 397 711 -23 2179 118 7 0 chr5 55050686 55050982 -148034550 + AluSq SINE Alu 3 300 -13 328 309 16 24 chr5 55051209 55051332 -148034200 + MIR3 SINE MIR 69 190 -18 2103 95 11 3 chr5 55053789 55054119 -148031413 + AluSq SINE Alu 29 360 0 1704 195 0 3 chr5 55057434 55057732 -148027800 + AluJo SINE Alu 11 307 -5 195 42 0 0 chr5 55057745 55057769 -148027763 + (CA)n Simple_repeat Simple_repeat 2 25 0 871 287 13 4 chr5 55057884 55058114 -148027418 + MIR SINE MIR 2 233 -29 431 262 52 133 chr5 55058116 55058440 -148027092 + L2 LINE L2 2980 3277 -36 376 271 45 38 chr5 55058675 55058808 -148026724 - MIR SINE MIR -72 190 57 2045 121 37 111 chr5 55059349 55059623 -148025909 - MER4E LTR ERV1 -28 738 445 1885 88 72 0 chr5 55059623 55059885 -148025647 + AluSc SINE Alu 1 281 -28 324 0 0 0 chr5 55059885 55059921 -148025611 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 2045 121 37 111 chr5 55059921 55060258 -148025274 - MER4E LTR ERV1 -319 447 1 1494 84 56 0 chr5 55060600 55060814 -148024718 - L1PA11 LINE L1 0 6174 5949 371 161 81 0 chr5 55060899 55060986 -148024546 + AluJ/FRAM SINE Alu 225 299 -3 660 124 0 0 chr5 55060988 55061093 -148024439 + (GGGGA)n Simple_repeat Simple_repeat 1 105 0 206 77 0 0 chr5 55061093 55061119 -148024413 + (GAGAA)n Simple_repeat Simple_repeat 5 30 0 1626 193 112 42 chr5 55061151 55061694 -148023838 + MLT1G LTR MaLR 3 583 -7 273 306 70 54 chr5 55061883 55062069 -148023463 + MLT1J LTR MaLR 111 299 -212 389 230 44 44 chr5 55062280 55062415 -148023117 + MLT1J LTR MaLR 329 463 -48 282 323 113 40 chr5 55063590 55063838 -148021694 - L2 LINE L2 0 3313 3048 1874 217 46 63 chr5 55064111 55064714 -148020818 + MER7C DNA MER2_type 8 600 -2 216 338 62 0 chr5 55065697 55065777 -148019755 + MER91C DNA MER1_type 31 115 -25 2834 16 0 0 chr5 55067516 55067827 -148017705 - AluYb8 SINE Alu -7 311 1 230 200 0 0 chr5 55067866 55067910 -148017622 + MSTD LTR MaLR 1 44 -352 2192 171 29 12 chr5 55067910 55068324 -148017208 - MSTB LTR MaLR 0 426 6 6782 174 30 55 chr5 55068339 55069829 -148015703 - MSTB-int LTR MaLR -13 1638 187 12499 178 17 10 chr5 55069847 55071103 -148014429 - L1PB2 LINE L1 -3 6864 5617 1828 123 32 42 chr5 55071103 55071412 -148014120 - AluSq SINE Alu 0 306 1 12499 178 17 10 chr5 55071412 55072314 -148013218 - L1PB2 LINE L1 -1250 5617 4722 1756 122 76 62 chr5 55072314 55072683 -148012849 - THE1C LTR MaLR -1 374 1 12499 178 17 10 chr5 55072683 55074265 -148011267 - L1PB2 LINE L1 -2145 4722 3095 7827 198 10 20 chr5 55074269 55076557 -148008975 - L1PB2 LINE L1 -5219 1644 3 1015 185 0 0 chr5 55076574 55076769 -148008763 - MSTB-int LTR MaLR -1456 195 1 2402 152 21 21 chr5 55076773 55077195 -148008337 - MSTB LTR MaLR -4 422 1 1451 168 139 9 chr5 55077195 55077511 -148008021 + MSTD LTR MaLR 40 396 0 24 53 0 0 chr5 55077536 55077574 -148007958 + AT_rich Low_complexity Low_complexity 1 38 0 1779 176 79 5 chr5 55079195 55079575 -148005957 + MSTB1 LTR MaLR 1 408 -24 1704 160 34 7 chr5 55079601 55079870 -148005662 - AluJb SINE Alu -36 276 1 416 345 42 12 chr5 55080618 55080786 -148004746 - MIR SINE MIR -86 176 4 248 290 0 0 chr5 55082688 55082757 -148002775 - L3 LINE CR1 -14 1563 1495 939 364 101 15 chr5 55082759 55083540 -148001992 + L2 LINE L2 1882 2729 -585 203 175 0 0 chr5 55083590 55083630 -148001902 + A-rich Low_complexity Low_complexity 2 41 0 774 165 0 0 chr5 55083740 55083873 -148001659 - FLAM_C SINE Alu 0 133 1 4920 163 53 4 chr5 55086116 55087321 -147998211 - L1MA9 LINE L1 -10 6302 5042 288 0 0 0 chr5 55087323 55087355 -147998177 + (T)n Simple_repeat Simple_repeat 1 32 0 8598 189 40 25 chr5 55087361 55087899 -147997633 - L1MA9 LINE L1 -1073 5073 4545 2447 127 19 28 chr5 55087899 55088323 -147997209 - L1MA2 LINE L1 0 6304 5885 8598 189 40 25 chr5 55088323 55089969 -147995563 - L1MA9 LINE L1 -1601 4545 2856 33 0 0 0 chr5 55090180 55090213 -147995319 + AT_rich Low_complexity Low_complexity 1 33 0 240 244 33 11 chr5 55091144 55091234 -147994298 - MER81 DNA DNA -21 93 2 300 302 151 73 chr5 55091913 55092257 -147993275 - L1MDb LINE L1 -5643 766 396 181 243 75 47 chr5 55092677 55092784 -147992748 + L2 LINE L2 3006 3115 -157 2061 122 10 0 chr5 55093884 55094187 -147991345 - AluSq SINE Alu -7 306 1 2114 131 0 13 chr5 55094217 55094530 -147991002 + AluSg1 SINE Alu 1 309 0 2438 97 6 0 chr5 55094659 55094970 -147990562 - AluSq SINE Alu 0 313 1 209 382 53 27 chr5 55095724 55095949 -147989583 + MIR SINE MIR 20 250 -12 1743 225 73 64 chr5 55095974 55096612 -147988920 - L1ME2 LINE L1 -9 6155 5524 2190 113 0 0 chr5 55096612 55096913 -147988619 - AluSc SINE Alu -8 301 1 1743 225 73 64 chr5 55096913